Query psy3760
Match_columns 306
No_of_seqs 189 out of 1511
Neff 11.2
Searched_HMMs 29240
Date Fri Aug 16 16:35:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ixc_A CBNR, LYSR-type regulat 100.0 1.3E-60 4.4E-65 390.6 31.9 291 1-296 1-293 (294)
2 3fxq_A LYSR type regulator of 100.0 2.4E-60 8.2E-65 391.1 28.2 295 1-299 2-299 (305)
3 3fzv_A Probable transcriptiona 100.0 8.2E-60 2.8E-64 388.0 31.4 294 1-298 4-301 (306)
4 2esn_A Probable transcriptiona 100.0 4.5E-60 1.5E-64 390.3 25.8 293 1-297 10-307 (310)
5 1al3_A Cys regulon transcripti 100.0 1.1E-59 3.7E-64 390.3 23.9 302 1-302 1-302 (324)
6 2h9b_A HTH-type transcriptiona 100.0 5.6E-59 1.9E-63 384.0 24.9 292 1-298 1-296 (312)
7 2h98_A HTH-type transcriptiona 100.0 9.8E-59 3.4E-63 382.4 24.9 293 1-299 1-297 (313)
8 1uth_A LYSR-type regulatory pr 100.0 1.9E-59 6.6E-64 387.3 17.5 295 1-299 14-310 (315)
9 3szp_A Transcriptional regulat 100.0 1E-58 3.5E-63 378.7 15.5 289 1-296 1-290 (291)
10 3hhg_A Transcriptional regulat 100.0 1.3E-57 4.4E-62 375.0 14.9 295 1-301 3-299 (306)
11 3isp_A HTH-type transcriptiona 100.0 6.9E-55 2.4E-59 358.2 16.5 285 1-298 6-292 (303)
12 3mz1_A Putative transcriptiona 100.0 6.4E-56 2.2E-60 363.6 9.6 290 4-299 1-295 (300)
13 2hxr_A HTH-type transcriptiona 100.0 3.6E-35 1.2E-39 232.4 21.1 231 65-298 2-232 (238)
14 2fyi_A HTH-type transcriptiona 100.0 9.7E-33 3.3E-37 217.0 24.3 216 85-300 6-221 (228)
15 3oxn_A Putative transcriptiona 100.0 1.8E-32 6.3E-37 217.2 19.0 220 78-300 4-224 (241)
16 4ab5_A Transcriptional regulat 100.0 2.1E-32 7.3E-37 213.9 19.0 209 89-299 4-213 (222)
17 3ho7_A OXYR; beta-alpha-barrel 100.0 1.4E-32 4.9E-37 216.4 17.7 212 86-298 4-217 (232)
18 2y7p_A LYSR-type regulatory pr 100.0 3.7E-32 1.3E-36 212.2 18.6 207 90-298 5-212 (218)
19 2ql3_A Probable transcriptiona 100.0 4.7E-31 1.6E-35 204.5 23.3 201 91-293 3-207 (209)
20 3jv9_A OXYR, transcriptional r 100.0 6.7E-32 2.3E-36 210.5 17.1 206 91-297 2-212 (219)
21 1i6a_A OXYR, hydrogen peroxide 100.0 3.4E-32 1.2E-36 212.5 13.1 206 91-297 3-209 (219)
22 3hhf_B Transcriptional regulat 100.0 2.3E-30 8E-35 201.0 6.5 206 89-298 3-210 (213)
23 3onm_A Transcriptional regulat 100.0 4.7E-27 1.6E-31 185.7 20.9 195 89-298 23-219 (238)
24 2qsx_A Putative transcriptiona 100.0 2.5E-28 8.4E-33 190.5 12.6 194 91-297 17-216 (218)
25 3kos_A HTH-type transcriptiona 100.0 9.6E-28 3.3E-32 187.1 13.7 204 89-300 8-212 (219)
26 3fd3_A Chromosome replication 99.9 7.1E-27 2.4E-31 180.6 14.3 200 92-297 1-202 (208)
27 2ijl_A AGR_C_4647P, molybdenum 99.9 3.5E-27 1.2E-31 164.9 10.8 102 1-104 24-134 (135)
28 1twy_A ABC transporter, peripl 99.9 1.8E-23 6E-28 170.0 20.7 205 89-299 24-267 (290)
29 3cta_A Riboflavin kinase; stru 99.9 7.7E-25 2.6E-29 171.0 7.4 185 2-201 6-214 (230)
30 3cvg_A Putative metal binding 99.9 4.6E-22 1.6E-26 161.5 18.4 212 90-301 17-269 (294)
31 1b9m_A Protein (mode); DNA-bin 99.9 6.5E-24 2.2E-28 170.0 -2.8 127 1-130 20-156 (265)
32 4ecf_A ABC-type phosphate tran 99.8 6.6E-20 2.3E-24 146.2 18.2 194 91-295 2-231 (264)
33 4exl_A PBP 1, phosphate-bindin 99.8 7.2E-17 2.5E-21 128.6 19.6 195 92-297 3-233 (265)
34 1ixh_A Phosphate-binding prote 99.7 1E-16 3.6E-21 131.4 16.4 197 94-293 3-282 (321)
35 1atg_A MODA, periplasmic molyb 99.7 4.6E-16 1.6E-20 121.7 19.1 196 94-295 1-217 (231)
36 1pc3_A Phosphate-binding prote 99.7 7.7E-16 2.6E-20 127.5 15.8 203 90-294 24-318 (350)
37 3muq_A Uncharacterized conserv 99.6 1.6E-14 5.5E-19 111.7 16.7 206 93-300 5-232 (237)
38 3lr1_A Tungstate ABC transport 99.6 5.2E-14 1.8E-18 108.6 16.8 208 91-299 3-232 (236)
39 3kn3_A Putative periplasmic pr 99.4 1.6E-12 5.4E-17 100.3 12.5 207 91-300 3-237 (242)
40 2v25_A Major cell-binding fact 99.2 2.1E-10 7.2E-15 90.9 13.8 189 92-293 37-245 (259)
41 2x26_A Periplasmic aliphatic s 99.2 5.2E-10 1.8E-14 91.3 15.2 197 92-294 2-212 (308)
42 2lkp_A Transcriptional regulat 99.2 6.6E-11 2.2E-15 82.1 7.8 76 1-79 30-106 (119)
43 4gd5_A Phosphate ABC transport 99.2 5E-09 1.7E-13 84.1 19.3 207 90-302 34-272 (279)
44 1us5_A Putative GLUR0 ligand b 99.0 6.9E-09 2.4E-13 84.8 15.4 166 92-262 18-210 (314)
45 3r26_A Molybdate-binding perip 99.0 9.8E-08 3.4E-12 74.6 20.2 203 92-300 6-229 (237)
46 1wdn_A GLNBP, glutamine bindin 99.0 2.6E-08 8.9E-13 76.9 14.5 197 92-303 2-216 (226)
47 3gzg_A Molybdate-binding perip 98.9 3.8E-07 1.3E-11 71.8 20.1 204 91-300 21-245 (253)
48 2pyy_A Ionotropic glutamate re 98.8 3.3E-08 1.1E-12 76.5 11.3 189 92-292 2-208 (228)
49 1tbx_A ORF F-93, hypothetical 98.8 4E-09 1.4E-13 70.4 5.0 80 1-82 6-92 (99)
50 2pvu_A ARTJ; basic amino acid 98.8 1.1E-07 3.9E-12 75.8 14.1 200 90-303 39-256 (272)
51 3cij_A UPF0100 protein AF_0094 98.8 4.3E-07 1.5E-11 73.4 17.1 200 92-295 4-282 (295)
52 3cfx_A UPF0100 protein MA_0280 98.8 1.1E-06 3.9E-11 70.9 19.6 202 92-297 4-285 (296)
53 1lst_A Lysine, arginine, ornit 98.8 1.3E-07 4.4E-12 73.8 13.3 202 92-304 3-227 (239)
54 1ii5_A SLR1257 protein; membra 98.8 7.5E-07 2.6E-11 69.0 17.5 188 91-292 2-212 (233)
55 2ovg_A Phage lambda CRO; trans 98.8 1.2E-09 4.1E-14 65.9 1.2 45 9-68 7-53 (66)
56 3cfz_A UPF0100 protein MJ1186; 98.8 9.4E-07 3.2E-11 71.3 18.4 197 92-292 4-278 (292)
57 1r1t_A Transcriptional repress 98.7 3.8E-08 1.3E-12 68.0 6.4 73 2-77 45-118 (122)
58 2hxw_A Major antigenic peptide 98.6 9.5E-07 3.2E-11 68.9 14.1 191 94-294 2-218 (237)
59 2h09_A Transcriptional regulat 98.6 2.6E-07 9E-12 67.0 9.5 70 7-81 46-116 (155)
60 3k6v_A Solute-binding protein 98.6 2.2E-05 7.5E-10 64.6 20.7 206 91-300 41-326 (354)
61 3ksx_A Nitrate transport prote 98.6 8.1E-06 2.8E-10 66.8 18.2 200 90-295 26-239 (324)
62 4f3p_A Glutamine-binding perip 98.5 6.5E-06 2.2E-10 64.5 15.9 198 91-304 22-237 (249)
63 3kzg_A Arginine 3RD transport 98.5 2.2E-06 7.4E-11 66.7 12.9 199 92-305 2-226 (237)
64 4gvo_A LMO2349 protein; struct 98.5 1.7E-06 5.7E-11 67.8 12.3 208 90-304 6-230 (243)
65 4dz1_A DALS D-alanine transpor 98.5 6.8E-06 2.3E-10 64.9 15.9 202 91-303 27-247 (259)
66 3f3x_A Transcriptional regulat 98.5 6.9E-07 2.4E-11 63.9 8.9 77 1-79 35-116 (144)
67 3h7m_A Sensor protein; histidi 98.5 1.4E-05 4.9E-10 61.7 17.1 201 89-304 7-225 (234)
68 2y7i_A STM4351; arginine-bindi 98.5 1E-05 3.5E-10 62.3 15.8 199 91-304 4-223 (229)
69 2yjp_A Putative ABC transporte 98.5 4.1E-06 1.4E-10 67.5 13.9 196 93-303 55-270 (291)
70 3cg1_A UPF0100 protein PF0080; 98.5 2.5E-06 8.6E-11 68.9 12.5 199 92-294 4-282 (296)
71 3nrv_A Putative transcriptiona 98.4 4.9E-07 1.7E-11 65.0 7.1 75 1-79 38-120 (148)
72 2vha_A Periplasmic binding tra 98.4 1.4E-05 4.9E-10 64.0 16.5 201 92-303 16-242 (287)
73 3del_B Arginine binding protei 98.4 1.5E-05 5.1E-10 62.0 15.7 199 91-304 9-227 (242)
74 2pg4_A Uncharacterized protein 98.4 5.2E-07 1.8E-11 59.5 5.7 73 4-77 16-93 (95)
75 3tql_A Arginine-binding protei 98.4 1.4E-05 4.8E-10 61.4 14.8 200 93-304 2-223 (227)
76 2x4h_A Hypothetical protein SS 98.4 2.4E-06 8.2E-11 60.7 9.5 60 18-81 33-92 (139)
77 2yln_A Putative ABC transporte 98.4 9.5E-06 3.3E-10 65.0 14.2 196 92-304 56-272 (283)
78 4eq9_A ABC transporter substra 98.4 9.7E-06 3.3E-10 63.2 13.7 205 91-304 6-230 (246)
79 4ddd_A Immunogenic protein; ss 98.3 2.9E-05 1E-09 63.5 15.5 200 90-295 29-286 (327)
80 2fa5_A Transcriptional regulat 98.3 2E-06 6.7E-11 62.8 7.7 75 1-79 47-129 (162)
81 3hv1_A Polar amino acid ABC up 98.3 3.6E-05 1.2E-09 60.9 15.6 202 92-304 20-243 (268)
82 2pij_A Prophage PFL 6 CRO; tra 98.3 1.1E-07 3.8E-12 58.2 0.5 51 7-72 5-57 (67)
83 2cw1_A SN4M; lambda CRO fold, 98.3 3.5E-07 1.2E-11 54.7 2.6 27 10-37 8-34 (65)
84 3kbr_A Cyclohexadienyl dehydra 98.3 1.5E-05 5.2E-10 61.8 12.7 200 92-304 14-232 (239)
85 2nnn_A Probable transcriptiona 98.3 3E-06 1E-10 60.1 7.5 78 1-79 36-118 (140)
86 3k4u_A Binding component of AB 98.3 7.2E-05 2.5E-09 58.3 16.2 199 92-304 4-223 (245)
87 2q88_A EHUB, putative ABC tran 98.3 3.3E-05 1.1E-09 60.7 14.3 200 93-304 13-235 (257)
88 3mpk_A Virulence sensor protei 98.3 0.00025 8.4E-09 56.1 19.3 199 92-305 31-248 (267)
89 1on2_A Transcriptional regulat 98.2 6.9E-06 2.4E-10 58.5 9.0 60 18-81 24-84 (142)
90 3qax_A Probable ABC transporte 98.2 6.3E-05 2.2E-09 59.4 15.6 200 91-304 29-248 (268)
91 1ub9_A Hypothetical protein PH 98.2 7.3E-06 2.5E-10 54.4 8.6 68 4-74 17-91 (100)
92 1lj9_A Transcriptional regulat 98.2 4.7E-06 1.6E-10 59.5 7.9 77 1-79 27-109 (144)
93 1xt8_A Putative amino-acid tra 98.2 2.4E-05 8.2E-10 62.9 12.5 196 93-303 44-259 (292)
94 4h5g_A Amino acid ABC superfam 98.2 5.1E-05 1.7E-09 59.2 13.7 201 92-304 11-232 (243)
95 2rdp_A Putative transcriptiona 98.2 1.2E-05 4.1E-10 57.8 8.9 77 1-79 40-122 (150)
96 4fx0_A Probable transcriptiona 98.1 9.7E-06 3.3E-10 58.1 8.2 75 1-79 31-117 (148)
97 4i62_A Amino acid ABC transpor 98.1 8.3E-05 2.9E-09 58.7 14.6 201 92-304 38-259 (269)
98 3eco_A MEPR; mutlidrug efflux 98.1 7.3E-06 2.5E-10 58.1 7.5 75 1-79 29-113 (139)
99 3bja_A Transcriptional regulat 98.1 9E-06 3.1E-10 57.6 8.0 77 1-79 31-113 (139)
100 1jgs_A Multiple antibiotic res 98.1 1.3E-05 4.5E-10 56.7 8.7 74 1-78 32-114 (138)
101 2bv6_A MGRA, HTH-type transcri 98.1 3E-06 1E-10 60.3 5.4 77 1-79 35-117 (142)
102 3b73_A PHIH1 repressor-like pr 98.1 5.7E-06 1.9E-10 55.5 6.2 64 1-68 11-78 (111)
103 2hr3_A Probable transcriptiona 98.1 1.1E-05 3.7E-10 57.8 8.2 74 2-79 34-116 (147)
104 2qvo_A Uncharacterized protein 98.1 6.5E-06 2.2E-10 54.1 6.4 76 2-79 11-93 (95)
105 1s3j_A YUSO protein; structura 98.1 1E-05 3.5E-10 58.5 8.0 75 1-79 35-117 (155)
106 1r1u_A CZRA, repressor protein 98.1 1E-05 3.5E-10 54.3 7.4 71 3-76 26-97 (106)
107 3ech_A MEXR, multidrug resista 98.1 8E-06 2.7E-10 58.1 7.2 75 1-79 35-117 (142)
108 2gxg_A 146AA long hypothetical 98.1 1.2E-05 4E-10 57.5 8.1 77 1-79 35-116 (146)
109 3bro_A Transcriptional regulat 98.1 9.3E-06 3.2E-10 57.7 7.4 75 1-79 32-116 (141)
110 3i6v_A Periplasmic His/Glu/Gln 98.1 6E-05 2.1E-09 58.3 12.6 191 92-304 4-212 (232)
111 3tmg_A Glycine betaine, L-prol 98.1 0.00063 2.1E-08 54.2 18.4 192 91-291 14-231 (280)
112 3kp7_A Transcriptional regulat 98.1 1.3E-05 4.4E-10 57.7 7.9 74 2-78 37-118 (151)
113 3df8_A Possible HXLR family tr 98.1 1.3E-05 4.5E-10 54.2 7.4 71 6-80 30-106 (111)
114 3fm5_A Transcriptional regulat 98.1 1.4E-05 4.7E-10 57.5 7.9 75 1-79 37-120 (150)
115 3bj6_A Transcriptional regulat 98.1 1.1E-05 3.8E-10 58.1 7.4 75 1-79 38-120 (152)
116 1u2w_A CADC repressor, cadmium 98.1 6.3E-06 2.1E-10 56.9 5.7 68 4-75 43-113 (122)
117 2eth_A Transcriptional regulat 98.1 1.7E-05 5.8E-10 57.3 8.3 77 1-79 42-124 (154)
118 1z91_A Organic hydroperoxide r 98.1 2E-06 6.7E-11 61.7 3.1 75 1-79 38-120 (147)
119 2qq9_A Diphtheria toxin repres 98.1 1.9E-05 6.5E-10 60.9 8.7 71 7-81 13-86 (226)
120 3bdd_A Regulatory protein MARR 98.1 7.7E-06 2.6E-10 58.2 6.0 77 1-79 29-112 (142)
121 2iee_A ORF2, probable ABC tran 98.0 0.00011 3.6E-09 58.4 13.3 197 92-303 20-240 (271)
122 2a61_A Transcriptional regulat 98.0 2.8E-05 9.5E-10 55.4 8.8 77 1-79 31-113 (145)
123 1z7u_A Hypothetical protein EF 98.0 3.7E-05 1.3E-09 52.1 8.8 76 6-85 25-108 (112)
124 2fbi_A Probable transcriptiona 98.0 2.2E-05 7.5E-10 55.7 8.1 78 1-79 34-116 (142)
125 3bpv_A Transcriptional regulat 98.0 1E-05 3.5E-10 57.2 6.2 77 1-78 27-108 (138)
126 1mqi_A Glutamate receptor 2; G 98.0 7.2E-05 2.5E-09 59.0 11.7 173 106-292 34-242 (263)
127 3l6g_A Betaine ABC transporter 98.0 0.00065 2.2E-08 53.3 16.9 188 93-291 2-214 (256)
128 2obp_A Putative DNA-binding pr 98.0 2.1E-05 7.2E-10 50.9 6.8 67 2-71 15-92 (96)
129 2fbk_A Transcriptional regulat 98.0 1.9E-05 6.5E-10 58.7 7.6 78 1-79 67-152 (181)
130 3cjn_A Transcriptional regulat 98.0 2.7E-05 9.3E-10 56.7 8.0 77 1-79 50-132 (162)
131 3jw4_A Transcriptional regulat 98.0 3.4E-05 1.2E-09 55.2 8.2 75 1-79 39-123 (148)
132 3oop_A LIN2960 protein; protei 98.0 5E-05 1.7E-09 54.0 9.1 75 1-79 35-117 (143)
133 2frh_A SARA, staphylococcal ac 98.0 1.9E-05 6.6E-10 54.9 6.6 74 1-78 35-118 (127)
134 3g3z_A NMB1585, transcriptiona 98.0 3.3E-05 1.1E-09 55.1 7.9 74 1-78 29-110 (145)
135 4h1x_A PBP 2, phosphate-bindin 98.0 4.2E-05 1.4E-09 60.3 9.0 136 46-190 104-251 (265)
136 3cdh_A Transcriptional regulat 97.9 3.8E-05 1.3E-09 55.5 8.2 75 1-79 41-123 (155)
137 2zkz_A Transcriptional repress 97.9 2.1E-05 7E-10 52.1 6.2 61 2-65 26-89 (99)
138 3e6m_A MARR family transcripti 97.9 2.6E-05 8.9E-10 56.7 7.0 75 1-79 51-133 (161)
139 2nyx_A Probable transcriptiona 97.9 4.1E-05 1.4E-09 56.2 8.0 74 1-78 43-124 (168)
140 3boq_A Transcriptional regulat 97.9 2.8E-05 9.6E-10 56.5 6.9 74 1-78 45-127 (160)
141 3deu_A Transcriptional regulat 97.9 3.8E-05 1.3E-09 56.2 7.6 75 1-79 51-134 (166)
142 2pex_A Transcriptional regulat 97.9 9.3E-06 3.2E-10 58.6 4.2 75 1-79 45-127 (153)
143 3p7i_A PHND, subunit of alkylp 97.9 0.00049 1.7E-08 56.0 14.7 205 89-303 10-246 (321)
144 1r7j_A Conserved hypothetical 97.9 9.8E-05 3.3E-09 48.1 8.5 74 8-86 13-86 (95)
145 3hrs_A Metalloregulator SCAR; 97.9 4.5E-05 1.5E-09 58.2 7.7 60 18-81 22-82 (214)
146 3s2w_A Transcriptional regulat 97.9 3.3E-05 1.1E-09 56.0 6.8 75 1-79 48-130 (159)
147 4ef1_A Pheromone COB1/lipoprot 97.9 0.0004 1.4E-08 53.5 12.9 198 92-302 3-235 (246)
148 2fbh_A Transcriptional regulat 97.9 5.4E-05 1.9E-09 53.9 7.6 75 1-79 35-118 (146)
149 3k0l_A Repressor protein; heli 97.8 0.00011 3.9E-09 53.4 9.2 75 1-79 44-126 (162)
150 3n5l_A Binding protein compone 97.8 0.00057 1.9E-08 55.4 14.2 203 92-304 3-238 (310)
151 2qww_A Transcriptional regulat 97.8 5.3E-05 1.8E-09 54.6 7.0 68 2-73 40-117 (154)
152 4aik_A Transcriptional regulat 97.8 0.00012 4.1E-09 52.6 8.6 74 2-79 30-112 (151)
153 3g3k_A Glutamate receptor, ion 97.8 0.00021 7E-09 56.2 10.4 196 92-303 3-247 (259)
154 1yyv_A Putative transcriptiona 97.8 7.2E-05 2.5E-09 52.1 6.8 76 7-85 39-121 (131)
155 3u2r_A Regulatory protein MARR 97.8 6.9E-05 2.4E-09 54.9 7.0 75 1-79 44-128 (168)
156 4b8x_A SCO5413, possible MARR- 97.7 7.7E-05 2.6E-09 53.3 6.7 71 2-76 34-114 (147)
157 3hsr_A HTH-type transcriptiona 97.7 7.4E-05 2.5E-09 52.9 6.5 75 1-79 34-116 (140)
158 2f2e_A PA1607; transcription f 97.7 0.00011 3.7E-09 52.4 7.2 69 6-78 27-101 (146)
159 3tgn_A ADC operon repressor AD 97.7 0.00016 5.3E-09 51.5 8.0 66 2-71 37-109 (146)
160 3cuo_A Uncharacterized HTH-typ 97.7 0.00015 5.1E-09 47.8 7.3 67 4-71 25-94 (99)
161 3nqo_A MARR-family transcripti 97.7 0.00028 9.5E-09 52.7 9.5 76 1-78 39-122 (189)
162 1bja_A Transcription regulator 97.7 0.00025 8.4E-09 45.6 7.6 68 2-74 15-85 (95)
163 4a5n_A Uncharacterized HTH-typ 97.7 8.8E-05 3E-09 51.5 6.0 77 7-86 30-113 (131)
164 2v3u_A Glutamate receptor delt 97.7 0.00012 4.2E-09 57.6 7.4 184 106-303 31-252 (265)
165 2hzt_A Putative HTH-type trans 97.7 7.4E-05 2.5E-09 50.1 5.2 70 6-79 17-94 (107)
166 1fx7_A Iron-dependent represso 97.6 0.00026 8.8E-09 54.7 8.8 72 6-81 12-86 (230)
167 3k2d_A ABC-type metal ION tran 97.6 0.0023 8E-08 48.8 13.5 201 91-302 4-234 (237)
168 1sw5_A Osmoprotection protein 97.6 0.0011 3.7E-08 52.8 11.8 203 92-300 5-246 (275)
169 3qsl_A Putative exported prote 97.6 0.0075 2.6E-07 49.3 17.3 199 92-295 32-257 (346)
170 4edp_A ABC transporter, substr 97.5 0.013 4.4E-07 48.0 18.4 199 92-294 34-289 (351)
171 3uif_A Sulfonate ABC transport 97.5 0.0026 9.1E-08 52.3 14.1 196 92-295 5-229 (348)
172 3un6_A Hypothetical protein sa 97.5 0.0032 1.1E-07 51.7 14.0 198 91-295 50-265 (341)
173 2jsc_A Transcriptional regulat 97.5 0.00018 6.3E-09 49.1 5.3 59 4-63 22-81 (118)
174 3f6o_A Probable transcriptiona 97.5 0.00045 1.5E-08 47.2 7.2 64 4-68 19-83 (118)
175 2fsw_A PG_0823 protein; alpha- 97.5 0.00018 6.1E-09 48.3 5.0 64 8-75 30-101 (107)
176 4hbl_A Transcriptional regulat 97.4 0.00058 2E-08 48.8 8.0 71 1-75 39-117 (149)
177 1yae_A Glutamate receptor, ion 97.4 0.00088 3E-08 54.3 9.9 193 91-292 11-273 (312)
178 2g29_A Nitrate transport prote 97.4 0.0039 1.3E-07 52.8 14.0 201 91-294 31-266 (417)
179 1xs5_A 29 kDa protein, membran 97.4 0.0044 1.5E-07 48.0 13.1 188 93-294 3-222 (241)
180 2wte_A CSA3; antiviral protein 97.4 0.00035 1.2E-08 54.2 6.8 80 2-84 151-231 (244)
181 3ix1_A N-formyl-4-amino-5-amin 97.4 0.0023 7.9E-08 51.5 11.9 195 94-295 6-218 (302)
182 2oqg_A Possible transcriptiona 97.4 0.0027 9.2E-08 42.9 10.4 81 5-86 23-105 (114)
183 3tqw_A Methionine-binding prot 97.4 0.0021 7.2E-08 49.2 10.7 199 93-302 3-231 (240)
184 1sfx_A Conserved hypothetical 97.4 0.0011 3.9E-08 44.2 8.2 76 2-79 19-99 (109)
185 1p4x_A Staphylococcal accessor 97.3 0.0011 3.7E-08 51.7 8.7 75 1-76 156-237 (250)
186 3gxa_A Outer membrane lipoprot 97.3 0.01 3.4E-07 46.4 13.8 199 91-302 21-250 (275)
187 2rin_A Putative glycine betain 97.3 0.014 4.9E-07 46.8 15.4 193 92-292 6-231 (298)
188 1y0u_A Arsenical resistance op 97.3 0.00052 1.8E-08 44.9 5.6 56 5-65 33-88 (96)
189 2fxa_A Protease production reg 97.2 0.00094 3.2E-08 50.6 7.4 73 1-77 46-126 (207)
190 3up9_A Putative uncharacterize 97.2 0.013 4.3E-07 45.1 13.1 202 91-302 5-234 (245)
191 3jth_A Transcription activator 97.2 0.001 3.5E-08 43.6 6.0 60 4-64 24-84 (98)
192 2kko_A Possible transcriptiona 97.1 0.0017 5.8E-08 43.5 6.8 58 5-63 27-85 (108)
193 3o66_A Glycine betaine/carniti 97.1 0.0028 9.7E-08 50.3 9.0 204 90-298 6-251 (282)
194 1pb7_A N-methyl-D-aspartate re 97.1 0.00049 1.7E-08 55.3 4.6 188 92-291 40-271 (292)
195 2p8t_A Hypothetical protein PH 97.0 0.00066 2.2E-08 50.3 4.5 49 18-70 32-80 (200)
196 3pqk_A Biofilm growth-associat 97.0 0.0045 1.5E-07 40.9 8.1 59 4-63 24-83 (102)
197 4ib2_A Putative lipoprotein; p 97.0 0.0051 1.7E-07 47.5 9.2 200 93-302 11-242 (252)
198 3f6v_A Possible transcriptiona 96.9 0.0016 5.3E-08 46.5 5.7 65 5-70 60-125 (151)
199 1fse_A GERE; helix-turn-helix 96.9 0.0017 5.7E-08 40.0 5.0 45 2-47 13-57 (74)
200 1r9l_A Glycine betaine-binding 96.9 0.021 7.3E-07 46.0 12.8 199 91-291 6-258 (309)
201 1okr_A MECI, methicillin resis 96.9 0.0067 2.3E-07 41.5 8.3 75 2-77 9-90 (123)
202 3ir1_A Outer membrane lipoprot 96.9 0.028 9.5E-07 43.1 12.2 196 94-302 2-228 (245)
203 1p4x_A Staphylococcal accessor 96.8 0.0057 2E-07 47.6 8.5 77 1-78 32-115 (250)
204 1g2h_A Transcriptional regulat 96.8 0.0015 5E-08 38.6 3.9 31 9-40 27-57 (61)
205 4got_A Methionine-binding lipo 96.8 0.09 3.1E-06 40.5 14.6 201 91-302 4-238 (249)
206 3r6u_A Choline-binding protein 96.8 0.0073 2.5E-07 48.0 8.7 204 93-301 12-255 (284)
207 1zbm_A Hypothetical protein AF 96.7 0.082 2.8E-06 41.8 15.0 185 89-295 6-208 (280)
208 1p99_A Hypothetical protein PG 96.7 0.017 5.7E-07 46.3 10.4 189 93-293 39-261 (295)
209 2x7q_A Ca3427, possible thiami 96.6 0.13 4.5E-06 41.6 15.8 196 90-295 12-230 (321)
210 2rc8_A Glutamate [NMDA] recept 96.6 0.0055 1.9E-07 49.1 6.9 187 105-303 69-282 (294)
211 1hsj_A Fusion protein consisti 96.5 0.0031 1.1E-07 54.6 5.6 73 1-76 402-483 (487)
212 1umq_A Photosynthetic apparatu 96.5 0.0027 9.1E-08 39.7 3.6 31 10-40 48-78 (81)
213 3e7l_A Transcriptional regulat 96.5 0.0042 1.4E-07 36.9 4.3 31 11-41 27-57 (63)
214 1xn7_A Hypothetical protein YH 96.5 0.0046 1.6E-07 38.3 4.6 52 1-56 2-55 (78)
215 2a5s_A N-methyl-D-aspartate re 96.4 0.0061 2.1E-07 48.5 6.4 183 105-291 58-264 (284)
216 2i49_A Bicarbonate transporter 96.4 0.16 5.4E-06 43.0 15.3 202 91-294 34-274 (429)
217 2jpc_A SSRB; DNA binding prote 96.4 0.0056 1.9E-07 35.9 4.5 41 5-46 3-43 (61)
218 3onq_A Regulator of polyketide 96.3 0.0055 1.9E-07 48.1 5.3 45 4-48 197-241 (262)
219 3r0a_A Putative transcriptiona 96.3 0.034 1.2E-06 38.0 8.6 80 2-82 25-112 (123)
220 3hn0_A Nitrate transport prote 96.3 0.12 4.2E-06 40.9 13.1 141 92-248 4-154 (283)
221 2heo_A Z-DNA binding protein 1 96.3 0.011 3.7E-07 35.5 5.3 40 6-46 13-54 (67)
222 1ntc_A Protein (nitrogen regul 96.2 0.0056 1.9E-07 39.4 4.2 32 10-41 58-89 (91)
223 2o0m_A Transcriptional regulat 96.2 0.00076 2.6E-08 55.5 0.0 71 4-78 21-92 (345)
224 1tc3_C Protein (TC3 transposas 96.2 0.0051 1.7E-07 34.3 3.5 34 8-41 13-46 (51)
225 1je8_A Nitrate/nitrite respons 96.2 0.01 3.5E-07 37.3 5.2 45 2-47 23-67 (82)
226 1mkm_A ICLR transcriptional re 96.2 0.047 1.6E-06 42.5 10.1 59 4-66 9-70 (249)
227 1p4w_A RCSB; solution structur 96.2 0.013 4.5E-07 38.3 5.7 45 2-47 36-80 (99)
228 2pn6_A ST1022, 150AA long hypo 96.1 0.0075 2.6E-07 42.9 4.8 43 1-43 1-44 (150)
229 2cyy_A Putative HTH-type trans 96.1 0.012 4.1E-07 42.0 5.8 43 1-43 5-48 (151)
230 2hin_A GP39, repressor protein 96.1 0.0066 2.3E-07 36.8 3.7 27 12-39 7-33 (71)
231 2f5x_A BUGD; periplasmic bindi 96.0 0.48 1.6E-05 38.1 16.1 207 91-304 15-272 (312)
232 2k02_A Ferrous iron transport 96.0 0.0063 2.2E-07 38.5 3.3 43 1-44 2-44 (87)
233 2w25_A Probable transcriptiona 95.9 0.014 4.8E-07 41.5 5.6 42 2-43 6-48 (150)
234 3ulq_B Transcriptional regulat 95.9 0.022 7.5E-07 36.5 5.8 44 2-46 31-74 (90)
235 3h5t_A Transcriptional regulat 95.9 0.056 1.9E-06 44.6 9.9 114 18-150 11-136 (366)
236 3l7w_A Putative uncharacterize 95.8 0.072 2.5E-06 35.4 8.4 75 8-85 14-99 (108)
237 3c57_A Two component transcrip 95.8 0.023 7.7E-07 36.9 5.5 45 2-47 29-73 (95)
238 2cfx_A HTH-type transcriptiona 95.7 0.02 6.8E-07 40.4 5.6 42 2-43 4-46 (144)
239 3pu5_A Extracellular solute-bi 95.7 0.65 2.2E-05 37.5 17.9 198 91-294 4-265 (333)
240 2ozz_A Hypothetical protein YH 95.7 0.51 1.7E-05 36.0 14.2 176 92-289 15-207 (231)
241 1eto_A FIS, factor for inversi 95.6 0.016 5.4E-07 37.7 4.4 30 11-40 66-95 (98)
242 1xma_A Predicted transcription 95.6 0.054 1.9E-06 38.2 7.5 73 6-79 44-130 (145)
243 2esh_A Conserved hypothetical 95.6 0.098 3.3E-06 35.4 8.5 73 6-79 16-102 (118)
244 2dvz_A BUGE, putative exported 95.6 0.35 1.2E-05 39.0 13.0 207 91-304 17-276 (314)
245 2rnj_A Response regulator prot 95.5 0.026 8.8E-07 36.2 4.9 44 3-47 32-75 (91)
246 2cg4_A Regulatory protein ASNC 95.4 0.031 1.1E-06 39.8 5.8 42 2-43 7-49 (152)
247 2ia0_A Putative HTH-type trans 95.4 0.028 9.5E-07 41.0 5.6 42 2-43 16-58 (171)
248 2e1c_A Putative HTH-type trans 95.4 0.028 9.7E-07 40.9 5.5 42 2-43 26-68 (171)
249 1jko_C HIN recombinase, DNA-in 95.4 0.0089 3E-07 33.5 2.3 36 5-40 10-45 (52)
250 2x48_A CAG38821; archeal virus 95.4 0.023 7.9E-07 32.4 4.1 32 7-38 22-53 (55)
251 3u1d_A Uncharacterized protein 95.4 0.1 3.5E-06 36.8 8.0 65 4-69 30-107 (151)
252 3f8b_A Transcriptional regulat 95.4 0.17 6E-06 34.0 9.0 58 27-84 44-106 (116)
253 2czl_A Hypothetical protein TT 95.4 0.25 8.6E-06 38.7 11.4 181 94-295 3-201 (272)
254 2qpq_A Protein BUG27; alpha/be 95.3 0.86 2.9E-05 36.4 17.1 206 92-304 7-263 (301)
255 4esb_A Transcriptional regulat 95.3 0.12 4.1E-06 34.7 8.0 66 18-84 24-101 (115)
256 1i1g_A Transcriptional regulat 95.3 0.036 1.2E-06 38.8 5.7 43 1-43 2-45 (141)
257 1x3u_A Transcriptional regulat 95.3 0.03 1E-06 34.7 4.6 42 4-46 20-61 (79)
258 1xvx_A YFUA; periplasmic iron 95.2 0.93 3.2E-05 36.1 18.4 199 92-294 4-255 (312)
259 4esf_A PADR-like transcription 95.1 0.27 9.3E-06 33.1 9.4 78 8-85 16-104 (117)
260 2o8x_A Probable RNA polymerase 95.1 0.041 1.4E-06 33.1 4.9 46 3-48 18-63 (70)
261 1k78_A Paired box protein PAX5 95.1 0.11 3.6E-06 36.8 7.7 35 11-46 43-77 (149)
262 2d1h_A ST1889, 109AA long hypo 95.1 0.032 1.1E-06 36.9 4.7 73 3-79 21-102 (109)
263 2p5v_A Transcriptional regulat 95.1 0.042 1.4E-06 39.6 5.5 44 2-46 9-53 (162)
264 1ku9_A Hypothetical protein MJ 95.0 0.13 4.6E-06 36.1 8.1 43 3-46 26-70 (152)
265 3i4p_A Transcriptional regulat 95.0 0.034 1.2E-06 40.1 4.8 43 1-43 1-44 (162)
266 1uly_A Hypothetical protein PH 94.9 0.022 7.7E-07 42.3 3.9 45 4-49 21-65 (192)
267 2htj_A P fimbrial regulatory p 94.9 0.037 1.3E-06 34.5 4.3 29 18-47 16-44 (81)
268 2dbb_A Putative HTH-type trans 94.8 0.059 2E-06 38.3 5.8 42 2-43 8-50 (151)
269 1nh8_A ATP phosphoribosyltrans 94.8 0.42 1.4E-05 37.9 10.7 160 124-299 63-231 (304)
270 1hqc_A RUVB; extended AAA-ATPa 94.7 0.062 2.1E-06 43.5 6.3 57 7-67 251-312 (324)
271 3rkx_A Biotin-[acetyl-COA-carb 94.7 0.068 2.3E-06 43.3 6.4 43 18-62 21-63 (323)
272 2dk5_A DNA-directed RNA polyme 94.7 0.048 1.6E-06 34.9 4.4 47 2-51 19-68 (91)
273 1oyi_A Double-stranded RNA-bin 94.7 0.027 9.3E-07 35.0 3.0 31 14-44 28-58 (82)
274 1q1h_A TFE, transcription fact 94.6 0.059 2E-06 35.9 5.1 41 5-46 20-62 (110)
275 2xrn_A HTH-type transcriptiona 94.5 0.22 7.4E-06 38.5 8.7 60 4-67 7-70 (241)
276 1j5y_A Transcriptional regulat 94.5 0.076 2.6E-06 39.3 5.9 56 4-62 22-79 (187)
277 2b0l_A GTP-sensing transcripti 94.4 0.058 2E-06 35.4 4.5 48 18-67 45-93 (102)
278 1sbp_A Sulfate-binding protein 94.4 0.69 2.4E-05 36.9 11.9 186 104-294 13-249 (310)
279 4esw_A Pyrimidine biosynthesis 94.4 0.78 2.7E-05 37.3 12.3 138 92-237 6-155 (342)
280 1o63_A ATP phosphoribosyltrans 94.3 0.86 2.9E-05 34.2 11.0 155 124-298 40-202 (219)
281 1qgp_A Protein (double strande 94.3 0.072 2.5E-06 32.8 4.4 26 18-43 33-58 (77)
282 2glo_A Brinker CG9653-PA; prot 94.3 0.067 2.3E-06 31.0 4.1 34 10-43 15-52 (59)
283 3hhh_A Transcriptional regulat 94.3 0.5 1.7E-05 31.7 9.0 77 9-85 19-106 (116)
284 1qbj_A Protein (double-strande 94.2 0.12 4E-06 32.2 5.2 27 17-43 28-54 (81)
285 2p7v_B Sigma-70, RNA polymeras 94.1 0.089 3E-06 31.4 4.6 44 4-48 9-57 (68)
286 3elk_A Putative transcriptiona 94.1 0.15 5.3E-06 34.3 6.2 65 18-82 29-104 (117)
287 1rzs_A Antirepressor, regulato 94.1 0.055 1.9E-06 31.6 3.5 23 13-36 8-30 (61)
288 1xmk_A Double-stranded RNA-spe 94.0 0.088 3E-06 32.5 4.4 48 18-66 27-75 (79)
289 1s7o_A Hypothetical UPF0122 pr 93.9 0.14 4.7E-06 34.3 5.6 46 3-48 25-70 (113)
290 2g7u_A Transcriptional regulat 93.9 0.072 2.5E-06 41.7 4.9 57 5-65 16-74 (257)
291 1pdn_C Protein (PRD paired); p 93.9 0.29 9.9E-06 33.2 7.6 34 10-43 27-60 (128)
292 2cob_A LCOR protein; MLR2, KIA 93.9 0.16 5.6E-06 30.1 5.1 44 4-47 17-61 (70)
293 4i1d_A ABC transporter substra 93.8 2.1 7.1E-05 34.3 18.7 197 92-294 2-255 (324)
294 4g6q_A Putative uncharacterize 93.8 0.041 1.4E-06 40.5 3.1 40 4-43 24-64 (182)
295 3hug_A RNA polymerase sigma fa 93.8 0.14 4.9E-06 32.7 5.4 43 4-46 41-83 (92)
296 1bia_A BIRA bifunctional prote 93.7 0.1 3.6E-06 42.2 5.6 56 4-61 6-62 (321)
297 2p4w_A Transcriptional regulat 93.7 0.077 2.7E-06 39.7 4.5 39 5-43 17-55 (202)
298 2elh_A CG11849-PA, LD40883P; s 93.7 0.18 6.3E-06 31.8 5.7 30 14-43 36-65 (87)
299 3k2z_A LEXA repressor; winged 93.6 0.12 4.3E-06 38.4 5.5 42 18-61 26-68 (196)
300 2vd2_A ATP phosphoribosyltrans 93.5 0.74 2.5E-05 34.5 9.4 154 124-297 49-210 (214)
301 1h3d_A ATP-phosphoribosyltrans 93.4 2.3 8E-05 33.7 12.6 161 123-299 47-225 (299)
302 2co5_A Viral protein F93; vira 93.2 0.68 2.3E-05 30.0 7.8 56 21-76 33-90 (99)
303 2o0y_A Transcriptional regulat 93.2 0.2 6.8E-06 39.2 6.3 56 6-65 26-84 (260)
304 2vd3_A ATP phosphoribosyltrans 93.0 0.6 2.1E-05 36.8 8.6 159 124-298 47-214 (289)
305 3szt_A QCSR, quorum-sensing co 92.9 0.2 6.7E-06 38.6 5.8 44 2-46 177-220 (237)
306 1xsv_A Hypothetical UPF0122 pr 92.9 0.23 7.7E-06 33.2 5.4 46 3-48 28-73 (113)
307 4euo_A ABC transporter, substr 92.8 3 0.0001 33.3 18.7 193 94-294 2-250 (320)
308 2q0o_A Probable transcriptiona 92.8 0.18 6.1E-06 38.8 5.5 44 2-46 177-220 (236)
309 3e13_X Putative iron-uptake AB 92.8 3.1 0.0001 33.1 17.0 199 93-294 2-260 (322)
310 1gtk_A Porphobilinogen deamina 92.7 3.1 0.00011 33.1 15.2 184 93-291 4-219 (313)
311 3ri2_A Transcriptional regulat 92.7 0.32 1.1E-05 33.1 6.0 59 26-84 48-110 (123)
312 3mq0_A Transcriptional repress 92.7 0.69 2.4E-05 36.4 8.8 60 4-67 31-93 (275)
313 2b4l_A Glycine betaine-binding 92.7 0.73 2.5E-05 36.2 8.9 108 22-149 113-220 (268)
314 1u78_A TC3 transposase, transp 92.6 0.45 1.5E-05 32.9 7.0 53 7-63 13-65 (141)
315 4h1x_A PBP 2, phosphate-bindin 92.6 1.2 4E-05 34.9 9.9 103 194-302 13-136 (265)
316 2w7n_A TRFB transcriptional re 92.5 0.33 1.1E-05 31.6 5.5 39 6-44 24-62 (101)
317 2vxz_A Pyrsv_GP04; viral prote 92.5 0.64 2.2E-05 32.2 7.0 73 6-86 17-89 (165)
318 1yg2_A Gene activator APHA; vi 92.1 0.37 1.3E-05 35.2 6.1 52 14-69 14-81 (179)
319 2dql_A PEX protein; circadian 92.0 0.47 1.6E-05 31.8 6.1 51 26-77 52-109 (115)
320 1z7m_E ATP phosphoribosyltrans 92.0 0.56 1.9E-05 35.0 6.9 153 123-293 43-204 (208)
321 2nxo_A Hypothetical protein SC 92.0 0.59 2E-05 37.1 7.7 117 92-221 6-132 (291)
322 2jt1_A PEFI protein; solution 91.8 0.13 4.4E-06 31.7 2.8 26 18-43 26-51 (77)
323 1uxc_A FRUR (1-57), fructose r 91.8 0.13 4.6E-06 30.4 2.8 21 18-38 2-22 (65)
324 1ve4_A ATP phosphoribosyltrans 91.8 2.9 0.0001 31.1 10.5 148 124-293 47-202 (206)
325 1l3l_A Transcriptional activat 91.7 0.24 8.1E-06 38.0 5.0 44 2-46 175-218 (234)
326 3qp6_A CVIR transcriptional re 91.3 0.38 1.3E-05 37.7 5.8 45 2-47 199-243 (265)
327 4gl0_A LMO0810 protein; struct 91.3 1.7 5.9E-05 35.0 10.0 197 91-294 9-264 (333)
328 1ku3_A Sigma factor SIGA; heli 91.3 0.38 1.3E-05 29.0 4.6 42 4-45 14-59 (73)
329 3kg2_A Glutamate receptor 2; I 91.2 1.8 6.1E-05 39.9 11.1 70 106-176 414-499 (823)
330 2vn2_A DNAD, chromosome replic 91.1 0.43 1.5E-05 32.7 5.3 39 4-43 33-78 (128)
331 2ek5_A Predicted transcription 91.0 1.4 4.6E-05 30.2 7.7 44 18-64 30-73 (129)
332 3rpw_A ABC transporter; struct 91.0 5.6 0.00019 32.4 16.2 199 91-294 31-290 (365)
333 1tty_A Sigma-A, RNA polymerase 90.9 0.52 1.8E-05 29.6 5.2 44 5-48 23-70 (87)
334 1neq_A DNA-binding protein NER 90.7 0.36 1.2E-05 29.4 4.1 26 11-36 17-42 (74)
335 2yu3_A DNA-directed RNA polyme 90.3 0.86 2.9E-05 29.2 5.7 47 2-52 36-86 (95)
336 2qlz_A Transcription factor PF 90.3 0.07 2.4E-06 40.9 0.7 40 4-43 13-52 (232)
337 3r4k_A Transcriptional regulat 90.3 0.61 2.1E-05 36.4 6.1 57 6-66 9-69 (260)
338 1sd4_A Penicillinase repressor 90.2 2.1 7.2E-05 28.8 8.2 76 2-78 9-91 (126)
339 1j1v_A Chromosomal replication 90.1 0.76 2.6E-05 29.4 5.4 41 4-44 34-75 (94)
340 2pfz_A Putative exported prote 90.1 6.1 0.00021 31.4 12.9 185 94-290 2-230 (301)
341 2hzl_A Trap-T family sorbitol/ 90.0 7.1 0.00024 32.0 12.6 187 93-291 32-268 (365)
342 3tqn_A Transcriptional regulat 89.9 1.1 3.6E-05 29.9 6.3 45 18-65 35-79 (113)
343 2ia2_A Putative transcriptiona 89.9 0.16 5.6E-06 39.8 2.5 55 5-63 23-79 (265)
344 1zx4_A P1 PARB, plasmid partit 89.8 0.44 1.5E-05 35.1 4.6 68 13-84 21-93 (192)
345 2k27_A Paired box protein PAX- 89.8 0.58 2E-05 33.3 5.2 33 11-43 36-68 (159)
346 2fu4_A Ferric uptake regulatio 89.7 0.62 2.1E-05 28.9 4.7 40 4-43 18-65 (83)
347 2jn6_A Protein CGL2762, transp 89.7 0.42 1.4E-05 30.8 4.0 27 16-42 23-49 (97)
348 1v4r_A Transcriptional repress 89.2 0.1 3.4E-06 34.2 0.7 41 18-61 37-77 (102)
349 3kjx_A Transcriptional regulat 89.1 0.39 1.3E-05 39.1 4.4 109 18-150 12-132 (344)
350 3kor_A Possible Trp repressor; 88.7 0.63 2.1E-05 31.1 4.2 36 6-42 66-101 (119)
351 1p6r_A Penicillinase repressor 88.6 0.63 2.1E-05 28.8 4.1 51 3-54 9-64 (82)
352 2e1n_A PEX, period extender; c 88.6 0.26 8.8E-06 34.3 2.4 51 26-77 64-121 (138)
353 3pfi_A Holliday junction ATP-d 88.2 0.94 3.2E-05 36.7 6.1 60 6-68 266-328 (338)
354 1a04_A Nitrate/nitrite respons 88.0 0.91 3.1E-05 33.9 5.5 43 3-46 157-199 (215)
355 2jrt_A Uncharacterized protein 87.8 0.74 2.5E-05 29.6 4.1 40 4-43 37-76 (95)
356 3e3m_A Transcriptional regulat 87.4 0.47 1.6E-05 38.9 3.8 113 18-150 14-134 (355)
357 3mzy_A RNA polymerase sigma-H 87.4 1 3.5E-05 31.8 5.2 42 4-46 113-154 (164)
358 2hsg_A Glucose-resistance amyl 87.1 1.3 4.5E-05 35.7 6.3 109 18-150 4-124 (332)
359 3by6_A Predicted transcription 87.0 3.5 0.00012 27.9 7.4 42 18-62 37-78 (126)
360 3c9h_A ABC transporter, substr 86.9 2.4 8.2E-05 34.5 7.9 199 92-294 33-287 (355)
361 2l8n_A Transcriptional repress 86.9 0.28 9.5E-06 29.2 1.6 20 18-37 11-30 (67)
362 2pfy_A Putative exported prote 86.9 10 0.00035 30.1 11.6 186 94-291 3-232 (301)
363 2g9w_A Conserved hypothetical 86.8 4.9 0.00017 27.6 8.3 72 2-75 8-88 (138)
364 3h5o_A Transcriptional regulat 86.7 1.2 4.1E-05 36.1 5.9 22 18-39 6-27 (339)
365 4eqb_A Spermidine/putrescine A 86.6 11 0.00037 30.1 15.4 194 90-294 6-261 (330)
366 2zfw_A PEX; five alpha-helices 86.4 0.23 7.8E-06 35.0 1.1 49 26-77 74-131 (148)
367 1jhg_A Trp operon repressor; c 86.3 1.6 5.5E-05 28.3 5.0 28 12-40 54-82 (101)
368 1qpz_A PURA, protein (purine n 85.9 3.2 0.00011 33.5 8.1 109 18-149 2-121 (340)
369 3c3w_A Two component transcrip 85.2 1.7 5.9E-05 32.7 5.8 44 3-47 152-195 (225)
370 3neu_A LIN1836 protein; struct 85.2 6.4 0.00022 26.5 8.0 43 18-63 39-81 (125)
371 3jvd_A Transcriptional regulat 85.1 1.6 5.3E-05 35.3 5.8 112 18-149 8-126 (333)
372 3clo_A Transcriptional regulat 85.0 1.7 5.8E-05 33.8 5.7 43 3-46 200-242 (258)
373 1nnf_A Iron-utilization peripl 84.8 13 0.00043 29.3 17.2 194 95-294 2-252 (309)
374 3o6p_A Peptide ABC transporter 84.7 7.8 0.00027 29.2 9.3 56 94-149 100-156 (229)
375 3bd1_A CRO protein; transcript 84.0 1.6 5.5E-05 26.6 4.2 25 13-38 9-33 (79)
376 2p5k_A Arginine repressor; DNA 83.8 1.3 4.6E-05 25.6 3.6 23 18-40 21-48 (64)
377 4eq9_A ABC transporter substra 83.7 3.5 0.00012 31.1 7.0 52 95-149 116-169 (246)
378 1iej_A Ovotransferrin; iron, m 83.7 12 0.00041 30.3 10.2 116 93-216 5-137 (332)
379 1h45_A Lactoferrin; metal tran 83.6 4.5 0.00015 32.8 7.7 101 93-200 5-121 (334)
380 2rn7_A IS629 ORFA; helix, all 83.5 1.2 4E-05 29.3 3.6 29 16-45 31-59 (108)
381 2oa4_A SIR5; structure, struct 83.5 2.2 7.6E-05 27.6 4.7 38 5-42 39-76 (101)
382 3klo_A Transcriptional regulat 83.5 1.3 4.4E-05 33.4 4.4 43 3-46 162-204 (225)
383 3c7j_A Transcriptional regulat 83.2 3.7 0.00013 31.4 6.8 44 18-64 51-94 (237)
384 2ozz_A Hypothetical protein YH 83.1 2.2 7.7E-05 32.4 5.4 49 95-149 113-162 (231)
385 3dbi_A Sugar-binding transcrip 83.1 0.75 2.6E-05 37.3 3.0 113 18-149 5-126 (338)
386 1i3j_A I-TEVI, intron-associat 83.0 0.92 3.1E-05 30.3 2.8 24 15-39 83-106 (116)
387 2l0k_A Stage III sporulation p 82.7 2.4 8.2E-05 27.0 4.6 28 11-38 15-42 (93)
388 2qry_A Thiamine-binding peripl 82.5 17 0.00058 29.0 16.6 199 91-294 21-272 (330)
389 3u5c_T 40S ribosomal protein S 82.4 1.8 6.2E-05 29.9 4.2 37 30-70 98-135 (144)
390 2o20_A Catabolite control prot 82.0 1.1 3.8E-05 36.1 3.7 23 18-40 7-29 (332)
391 3g63_A Pfluding; subatomic res 82.0 1.7 5.7E-05 36.0 4.7 138 110-248 13-213 (381)
392 4ham_A LMO2241 protein; struct 81.3 1.3 4.6E-05 30.4 3.3 37 18-56 40-76 (134)
393 3iz6_S 40S ribosomal protein S 81.3 1.6 5.4E-05 30.3 3.5 38 29-70 99-137 (146)
394 3pvv_A Chromosomal replication 81.2 4 0.00014 26.5 5.3 42 4-45 38-79 (101)
395 1hlv_A CENP-B, major centromer 80.6 1.9 6.5E-05 29.3 4.0 38 7-44 15-53 (131)
396 1b4a_A Arginine repressor; hel 80.6 1.3 4.5E-05 31.1 3.1 32 10-42 14-50 (149)
397 1yio_A Response regulatory pro 80.6 2.7 9.4E-05 31.0 5.2 43 4-47 146-188 (208)
398 3fx3_A Cyclic nucleotide-bindi 80.5 1.2 4E-05 33.9 3.1 38 19-61 181-218 (237)
399 2auw_A Hypothetical protein NE 80.4 2.2 7.6E-05 30.6 4.2 24 13-36 100-123 (170)
400 1z6r_A MLC protein; transcript 79.9 1.3 4.4E-05 37.1 3.4 38 6-43 19-57 (406)
401 1jhf_A LEXA repressor; LEXA SO 79.6 3.8 0.00013 30.4 5.6 26 18-43 27-53 (202)
402 3t76_A VANU, transcriptional r 79.5 1.7 5.7E-05 27.4 3.1 25 13-37 34-58 (88)
403 4f3p_A Glutamine-binding perip 79.4 13 0.00044 28.0 8.9 76 95-177 131-215 (249)
404 2i6e_A Hypothetical protein; N 79.3 1.7 5.7E-05 34.8 3.7 112 91-220 13-133 (301)
405 3ecr_A Porphobilinogen deamina 79.3 24 0.00082 28.7 14.9 187 91-291 20-241 (364)
406 3mky_B Protein SOPB; partition 79.1 2.8 9.6E-05 30.6 4.4 42 6-49 31-76 (189)
407 3k01_A Acarbose/maltose bindin 78.9 7.4 0.00025 32.3 7.8 59 90-148 25-90 (412)
408 3lfp_A CSP231I C protein; tran 78.6 2.5 8.5E-05 27.0 3.8 29 14-42 12-40 (98)
409 3kz3_A Repressor protein CI; f 78.5 1.6 5.3E-05 26.7 2.7 24 14-37 23-46 (80)
410 3ic7_A Putative transcriptiona 78.4 1.7 5.7E-05 29.6 3.0 45 18-65 37-81 (126)
411 1r71_A Transcriptional repress 78.3 2.9 9.9E-05 30.4 4.4 65 4-70 40-104 (178)
412 1ryo_A Serotransferrin; iron t 78.2 25 0.00086 28.3 11.3 103 93-201 4-124 (327)
413 3l09_A Putative transcriptiona 78.1 2.5 8.5E-05 32.9 4.2 74 15-101 45-120 (266)
414 3frw_A Putative Trp repressor 77.8 5.2 0.00018 26.1 4.9 37 5-42 48-84 (107)
415 2xzm_T RPS19E; ribosome, trans 77.8 6.6 0.00023 27.5 5.8 39 29-71 100-144 (155)
416 1stz_A Heat-inducible transcri 77.1 9 0.00031 31.1 7.5 63 2-67 16-87 (338)
417 3fmy_A HTH-type transcriptiona 77.1 2.1 7.2E-05 25.6 2.9 22 14-35 22-43 (73)
418 2w48_A Sorbitol operon regulat 77.0 1.8 6.2E-05 34.8 3.4 37 17-56 22-59 (315)
419 2k9q_A Uncharacterized protein 76.8 4.4 0.00015 24.3 4.4 23 15-37 14-36 (77)
420 2xi8_A Putative transcription 76.6 2.6 8.8E-05 24.2 3.2 24 14-37 12-35 (66)
421 1z4h_A TORI, TOR inhibition pr 76.5 2.4 8.2E-05 24.9 3.0 22 18-39 12-33 (66)
422 3b7h_A Prophage LP1 protein 11 76.1 4.8 0.00016 24.1 4.5 24 14-37 18-41 (78)
423 2y75_A HTH-type transcriptiona 76.0 5.3 0.00018 27.0 5.1 59 5-65 11-74 (129)
424 2v84_A Spermidine/putrescine A 76.0 29 0.00098 27.8 14.4 55 91-149 23-80 (343)
425 1j9i_A GPNU1 DBD;, terminase s 75.5 0.89 3.1E-05 27.0 0.9 31 18-53 4-34 (68)
426 3iwf_A Transcription regulator 75.5 2.5 8.6E-05 27.7 3.1 25 15-40 35-59 (107)
427 1zug_A Phage 434 CRO protein; 75.2 5.5 0.00019 23.2 4.5 24 14-37 14-37 (71)
428 2l1p_A DNA-binding protein SAT 75.0 3.1 0.00011 25.5 3.1 22 16-37 32-53 (83)
429 2a6c_A Helix-turn-helix motif; 75.0 3.6 0.00012 25.3 3.7 25 13-37 28-52 (83)
430 2ao9_A Phage protein; structur 75.0 2.4 8.3E-05 29.9 3.1 22 17-38 49-70 (155)
431 4ev0_A Transcription regulator 74.9 2.4 8.1E-05 31.5 3.4 40 18-61 165-204 (216)
432 2heu_A Sugar ABC transporter, 74.6 11 0.00038 31.1 7.8 57 92-148 18-77 (401)
433 2hoe_A N-acetylglucosamine kin 74.2 3.4 0.00012 34.2 4.4 30 13-43 31-60 (380)
434 2v7f_A RPS19, RPS19E SSU ribos 74.2 4.1 0.00014 28.6 4.1 54 19-76 70-139 (150)
435 1jye_A Lactose operon represso 74.1 7.5 0.00025 31.5 6.4 24 18-41 5-28 (349)
436 2o3f_A Putative HTH-type trans 74.0 2.2 7.6E-05 28.2 2.6 25 15-40 39-63 (111)
437 3omt_A Uncharacterized protein 73.9 3.2 0.00011 24.6 3.2 25 14-38 19-43 (73)
438 2lfw_A PHYR sigma-like domain; 73.9 1.5 5.1E-05 31.1 1.9 42 7-48 100-141 (157)
439 3dv8_A Transcriptional regulat 73.6 2.6 9E-05 31.4 3.3 40 18-61 171-210 (220)
440 1wi9_A Protein C20ORF116 homol 73.2 6 0.0002 23.6 4.0 42 5-47 11-52 (72)
441 3b02_A Transcriptional regulat 73.1 2.9 9.8E-05 30.6 3.4 40 18-61 141-180 (195)
442 1r69_A Repressor protein CI; g 72.8 5.2 0.00018 23.1 3.9 24 14-37 12-35 (69)
443 3k4u_A Binding component of AB 72.6 12 0.0004 28.2 6.9 77 94-177 115-200 (245)
444 2k4b_A Transcriptional regulat 72.6 4.2 0.00015 26.2 3.6 50 5-55 37-91 (99)
445 2r1j_L Repressor protein C2; p 72.5 7 0.00024 22.4 4.5 23 15-37 17-39 (68)
446 1p2f_A Response regulator; DRR 72.0 8.6 0.00029 28.5 5.9 43 3-46 148-197 (220)
447 2ict_A Antitoxin HIGA; helix-t 71.7 4.6 0.00016 25.4 3.7 25 14-38 19-43 (94)
448 2v79_A DNA replication protein 71.5 8 0.00027 26.6 5.1 52 18-70 53-110 (135)
449 3dkw_A DNR protein; CRP-FNR, H 71.2 2.9 9.9E-05 31.3 3.1 36 18-56 180-215 (227)
450 3qq6_A HTH-type transcriptiona 71.1 3.2 0.00011 25.2 2.7 23 15-37 22-44 (78)
451 3e97_A Transcriptional regulat 71.1 3.2 0.00011 31.2 3.3 40 18-61 177-216 (231)
452 1adr_A P22 C2 repressor; trans 71.0 7.3 0.00025 23.0 4.4 23 15-37 17-39 (76)
453 2zcw_A TTHA1359, transcription 70.9 3.4 0.00012 30.4 3.3 40 18-61 148-187 (202)
454 1y9u_A Putative iron binding p 70.7 8.3 0.00028 30.7 5.9 93 91-191 4-127 (323)
455 1eu8_A Trehalose/maltose bindi 70.3 21 0.00071 29.5 8.4 56 93-148 4-68 (409)
456 3del_B Arginine binding protei 70.2 15 0.0005 27.5 7.0 30 119-149 136-165 (242)
457 4gvo_A LMO2349 protein; struct 69.8 9.7 0.00033 28.8 5.9 52 95-149 119-171 (243)
458 2ofy_A Putative XRE-family tra 69.2 5.4 0.00018 24.5 3.6 27 9-36 21-47 (86)
459 3bil_A Probable LACI-family tr 69.2 2.7 9.2E-05 34.2 2.7 23 18-40 10-32 (348)
460 2fmy_A COOA, carbon monoxide o 69.2 3.8 0.00013 30.5 3.4 40 18-61 169-209 (220)
461 1bm9_A RTP, TER, replication t 69.2 23 0.00078 23.8 6.7 51 25-75 49-108 (122)
462 1ft9_A Carbon monoxide oxidati 69.1 4.1 0.00014 30.4 3.5 35 18-55 165-199 (222)
463 1y7y_A C.AHDI; helix-turn-heli 69.0 6.7 0.00023 23.0 3.9 24 14-37 24-47 (74)
464 3bs3_A Putative DNA-binding pr 69.0 4.8 0.00016 23.9 3.2 24 14-37 21-44 (76)
465 1xwr_A Regulatory protein CII; 68.9 6 0.0002 25.4 3.6 27 8-36 17-43 (97)
466 1z05_A Transcriptional regulat 68.9 5.4 0.00018 33.6 4.5 38 6-43 42-80 (429)
467 2b5a_A C.BCLI; helix-turn-heli 68.9 6.7 0.00023 23.3 3.9 24 14-37 21-44 (77)
468 3eus_A DNA-binding protein; st 68.6 3.8 0.00013 25.4 2.7 22 15-36 26-47 (86)
469 2de3_A Dibenzothiophene desulf 68.5 47 0.0016 27.1 10.1 98 92-198 17-126 (365)
470 3f6w_A XRE-family like protein 68.4 3.8 0.00013 25.0 2.7 22 15-36 26-47 (83)
471 3ctp_A Periplasmic binding pro 68.2 5.9 0.0002 31.8 4.5 23 18-40 4-26 (330)
472 1ylf_A RRF2 family protein; st 68.0 15 0.00051 25.6 6.0 58 6-65 17-77 (149)
473 1sfu_A 34L protein; protein/Z- 67.9 6.4 0.00022 23.8 3.4 26 18-43 31-56 (75)
474 3d0s_A Transcriptional regulat 67.8 4.5 0.00015 30.3 3.5 40 18-61 179-218 (227)
475 3e6c_C CPRK, cyclic nucleotide 67.7 4.2 0.00014 31.1 3.3 39 18-60 179-217 (250)
476 2gqq_A Leucine-responsive regu 67.6 0.48 1.6E-05 34.0 -1.9 26 18-43 29-54 (163)
477 1zs4_A Regulatory protein CII; 67.6 7.8 0.00027 24.0 3.8 29 8-38 18-46 (83)
478 2jml_A DNA binding domain/tran 67.5 18 0.00062 22.0 6.6 53 18-74 7-60 (81)
479 3p7n_A Sensor histidine kinase 67.3 11 0.00037 28.7 5.7 41 5-46 203-243 (258)
480 3qph_A TRMB, A global transcri 67.2 45 0.0015 27.0 9.5 77 9-87 24-102 (342)
481 3trb_A Virulence-associated pr 67.1 3.8 0.00013 26.7 2.5 26 12-37 23-48 (104)
482 2gau_A Transcriptional regulat 66.9 4.6 0.00016 30.4 3.4 40 18-61 182-221 (232)
483 1zyb_A Transcription regulator 66.6 4.9 0.00017 30.3 3.5 36 18-56 188-223 (232)
484 3n0r_A Response regulator; sig 66.5 45 0.0015 26.1 12.3 95 7-149 118-212 (286)
485 2qlz_A Transcription factor PF 66.4 4.1 0.00014 31.1 2.9 43 14-60 177-219 (232)
486 3mpk_A Virulence sensor protei 66.3 23 0.00078 27.1 7.4 76 95-177 140-225 (267)
487 3la7_A Global nitrogen regulat 65.9 5.1 0.00017 30.5 3.5 40 18-61 195-234 (243)
488 2ef8_A C.ECOT38IS, putative tr 65.8 4.6 0.00016 24.6 2.7 23 15-37 22-44 (84)
489 4dyq_A Gene 1 protein; GP1, oc 65.7 8.7 0.0003 26.5 4.3 37 6-42 18-55 (140)
490 3s8q_A R-M controller protein; 65.4 4.8 0.00016 24.5 2.7 22 15-36 23-44 (82)
491 1y6u_A XIS, excisionase from t 65.3 4.7 0.00016 24.0 2.5 22 18-39 18-39 (70)
492 3lap_A Arginine repressor; arg 65.3 5.5 0.00019 28.6 3.2 15 26-40 49-63 (170)
493 3sqn_A Conserved domain protei 65.2 4.3 0.00015 34.9 3.2 45 13-60 106-153 (485)
494 3qax_A Probable ABC transporte 65.2 17 0.00059 27.5 6.5 30 119-149 157-186 (268)
495 3i3v_A Probable secreted solut 65.1 21 0.00073 29.3 7.5 59 91-149 6-71 (405)
496 2wiu_B HTH-type transcriptiona 65.1 11 0.00037 23.1 4.4 25 14-38 23-47 (88)
497 3o9x_A Uncharacterized HTH-typ 64.6 9.9 0.00034 25.8 4.5 22 14-35 82-103 (133)
498 2bgc_A PRFA; bacterial infecti 64.4 6.4 0.00022 29.8 3.8 40 18-61 171-211 (238)
499 3ke2_A Uncharacterized protein 63.9 18 0.0006 23.8 5.0 64 14-79 32-100 (117)
500 2yqr_A KIAA0907 protein; struc 63.6 7.5 0.00025 26.0 3.4 19 35-53 39-57 (119)
No 1
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=100.00 E-value=1.3e-60 Score=390.65 Aligned_cols=291 Identities=15% Similarity=0.157 Sum_probs=265.3
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+++| ||++||++||+||||||++|++||++||++||+|+++|+ +||++|+.|+++++++++.++++
T Consensus 1 m~l~~l~~f~~v~~~g-s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~-~lT~~G~~l~~~a~~~l~~~~~~ 78 (294)
T 1ixc_A 1 MEFRQLKYFIAVAEAG-NMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGI-ELTAAGHAFLEDARRILELAGRS 78 (294)
T ss_dssp CCHHHHHHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC-----C-CBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-CHHHHHHHhCCCcchHHHHHHHHHHHHCCEEEEeCCCCe-eECHhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCcee
Q psy3760 81 KKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLIS 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~ 160 (306)
...++.......|.|+||++++++..++++++..|.+.||++++++...++.++.+.|.+|++|++|+..+ ...+++..
T Consensus 79 ~~~~~~~~~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~-~~~~~l~~ 157 (294)
T 1ixc_A 79 GDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFF-PRHPGIEI 157 (294)
T ss_dssp HHHHHHHHHTCCEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCC-CCCTTEEE
T ss_pred HHHHHHHhcCCCceEEEEEccchhHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecC-CCCCCceE
Confidence 99998877778899999999999999999999999999999999999999999999999999999999654 55788999
Q ss_pred eccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecC--CCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhcc
Q psy3760 161 IPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDL--SFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRM 238 (306)
Q Consensus 161 ~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~ 238 (306)
.++++++++++++++||++.+..++++||.++|+|.+.. +...+..+++++...|+.+++.+++++..++..++.+|.
T Consensus 158 ~~l~~~~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~ 237 (294)
T 1ixc_A 158 VNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGA 237 (294)
T ss_dssp EEEEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTTS
T ss_pred EEEeeccEEEEEeCCCccccCCccCHHHHcCCCEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHcCC
Confidence 999999999999999999988899999999999999883 456678889999999999999999999999999999999
Q ss_pred ceeeeecceecccccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhh
Q psy3760 239 GIGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLN 296 (306)
Q Consensus 239 gi~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 296 (306)
|++++|.++.. ...++++.+|+++.....++|++|+++. .+|.+++|++++++.++
T Consensus 238 Gia~lp~~~~~-~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~~~~f~~~l~~~~~ 293 (294)
T 1ixc_A 238 ASSIVPASVAA-IRWPDIAFARIVGTRVKVPISCIFRKEK-QPPILARFVEHVRRSAK 293 (294)
T ss_dssp CBEEEEHHHHT-SCCTTEEEEEECCTTCEEEEEEEEESSS-CCHHHHHHHHHHHHHHC
T ss_pred eEEEechhhhh-cCCCceEEEECcCCCcceeEEEEEcCCC-CCHHHHHHHHHHHHHhc
Confidence 99999998743 3567899999987556789999999986 59999999999988764
No 2
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=100.00 E-value=2.4e-60 Score=391.08 Aligned_cols=295 Identities=20% Similarity=0.235 Sum_probs=273.0
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+++| ||++||++||+||||||++|++||++||++||+|+++++ +||++|+.|+++++++++.++++
T Consensus 2 m~l~~L~~f~~v~~~g-s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~r~~-~lT~~G~~l~~~a~~~l~~~~~~ 79 (305)
T 3fxq_A 2 LKLQTLQALICIEEVG-SLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGV-SLTSFGQAFMKHARLIVTESRRA 79 (305)
T ss_dssp CHHHHHHHHHHHHHHS-CHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEECSSSE-EECHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEEecCCCc-cCCHhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC-CCCCce
Q psy3760 81 KKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS-PSDKLI 159 (306)
Q Consensus 81 ~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~-~~~~~~ 159 (306)
...++.......|.|+||++++++..++++++..|.++||++++++....++++.+.|.+|++|++|+..+.. ..+++.
T Consensus 80 ~~~~~~~~~~~~g~l~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~~~l~ 159 (305)
T 3fxq_A 80 QEEIGQLRGRWEGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLE 159 (305)
T ss_dssp HHHHHHHHHHHHTEEEEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGSCTTEE
T ss_pred HHHHHHHhcCCCceEEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCCccCee
Confidence 9988887777789999999999999999999999999999999999999888999999999999999975433 268899
Q ss_pred eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCC-ceeEEEEecCHHHHHHHHHhcc
Q psy3760 160 SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKL-TPYIVLETINSDIIKTYVELRM 238 (306)
Q Consensus 160 ~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~g~ 238 (306)
..++++++++++++++||++.. .+++||.++|+|.+..+...+..+.+++...|+ .+++.+++++..++..++.+|.
T Consensus 160 ~~~L~~~~~~~v~~~~hpla~~--~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g~ 237 (305)
T 3fxq_A 160 AQPLYVSDVVIVGQRQHPMANA--TRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHSD 237 (305)
T ss_dssp EEEEEECCEEEEEETTCTTTTC--CSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTSS
T ss_pred EEEeecCcEEEEEcCCCCCCCC--CCHHHHhCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhCC
Confidence 9999999999999999999874 389999999999998877777788999999999 7889999999999999999999
Q ss_pred ceeeeecceeccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHH
Q psy3760 239 GIGIIASIAFDSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKF 299 (306)
Q Consensus 239 gi~~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (306)
|++++|.+++... ..++++.+|+++....+++|++|++++..+|+++.|++++++.+.+..
T Consensus 238 gia~lp~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~ 299 (305)
T 3fxq_A 238 LLTTMPRTLYERNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHALQTG 299 (305)
T ss_dssp CEEEEEHHHHHSSTTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC---
T ss_pred EEEEeeHHHHhhhhhcCCEEEeeCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 9999999998765 789999999988777789999999999999999999999999876543
No 3
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=100.00 E-value=8.2e-60 Score=388.04 Aligned_cols=294 Identities=20% Similarity=0.321 Sum_probs=263.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-CCCccccCHhHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-GKRIRGLTKPGQAILRSIEIIMQEIEG 79 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-~~~~~~lT~~G~~l~~~a~~il~~~~~ 79 (306)
||+++|++|++|+++| ||++||++||+||||+|++|++||++||++||+|+ ++|+ +||++|+.|+++++++++.+++
T Consensus 4 ~~l~~l~~f~~v~~~~-s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~-~lT~~G~~l~~~a~~~l~~~~~ 81 (306)
T 3fzv_A 4 YTLRQLKYFVTTVECG-SVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGV-SLTPAGARFYRKAQELLRMAHE 81 (306)
T ss_dssp CCHHHHHHHHHHHHSS-SHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-CHHHHHHHhCCCchHHHHHHHHHHHHhCCeeEeecCCCCc-eECHhHHHHHHHHHHHHHHHHH
Confidence 7999999999999999 99999999999999999999999999999999996 8998 8999999999999999999999
Q ss_pred HHHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCce
Q psy3760 80 LKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLI 159 (306)
Q Consensus 80 ~~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~ 159 (306)
+...+........|.|+||++++++..++++++..|.++||++++++...++.++.+.|.+|++|++|+..+ ...+++.
T Consensus 82 ~~~~~~~~~~~~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~-~~~~~l~ 160 (306)
T 3fzv_A 82 FEQNALADNDVIAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEH-DLDSTIE 160 (306)
T ss_dssp HHHC-CCCCCCCCEEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSS-SCCTTEE
T ss_pred HHHHHHHhccCCCceEEEEechhhhHHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHCCCccEEEEecc-ccccccc
Confidence 998888777778899999999999999999999999999999999999999999999999999999999755 5667899
Q ss_pred eeccc-cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhcc
Q psy3760 160 SIPCY-QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRM 238 (306)
Q Consensus 160 ~~~l~-~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~ 238 (306)
..+++ .++++++++++||++.+..++++||.++|+|.+..+.. +..+..++...|+.+++.+++++..++..++.+|.
T Consensus 161 ~~~l~~~~~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~ 239 (306)
T 3fzv_A 161 TEPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPS-RTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQGF 239 (306)
T ss_dssp EEESSCCBCCEEEEETTCTTTTSSEECHHHHTTSCEEEECCTTH-HHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTTS
T ss_pred eeeeeeccccEEEecCCCcccCCCCCCHHHHcCCCEEEecCCcc-hHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcCC
Confidence 99999 99999999999999999899999999999999987654 77888999999999999999999999999999999
Q ss_pred ceeeeecceeccc-ccCC-ceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHH
Q psy3760 239 GIGIIASIAFDSN-RDKN-LRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 239 gi~~~p~~~~~~~-~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (306)
|++++|...+... ..+. ++.+|++++....++|++|++++..+|.+++|++++++.+++.
T Consensus 240 Gia~lp~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~ 301 (306)
T 3fzv_A 240 GFSLLVTRPHSECTYDGKKVVMVDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYCREQLGKL 301 (306)
T ss_dssp CBEEECCCCSCSBCTTSCBEEEEEESSCCCBCCCEEEEETTSCCCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEecccccccccCCCceEEEECCCCCccceEEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 9999999888765 4554 9999998866778999999999999999999999999988653
No 4
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=100.00 E-value=4.5e-60 Score=390.33 Aligned_cols=293 Identities=16% Similarity=0.126 Sum_probs=267.4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+|+| ||++||++||+||||||++|++||++||++||+|+++|+ +||++|+.|+++++++++.++++
T Consensus 10 m~l~~L~~f~~v~~~g-s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~~~~-~lT~~G~~l~~~a~~~l~~~~~~ 87 (310)
T 2esn_A 10 LDLNLLLVFDALYRHR-NVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRM-QPTQRAEHLAAAVAAALRALGEG 87 (310)
T ss_dssp SCTTHHHHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEETTEE-EECHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-CHHHHHHHhCCChHHHHHHHHHHHHhhCCcceeecCCCc-cccHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999 999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHhhc-cCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEc---cccCCCC
Q psy3760 81 KKIGKEFS-AYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVT---EILSPSD 156 (306)
Q Consensus 81 ~~~~~~~~-~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~---~~~~~~~ 156 (306)
...++... ....|.|+||++++++..++++++..|.+.||++++++...++.++.+.|.+|++|++|+. .+ ...+
T Consensus 88 ~~~~~~~~~~~~~~~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~-~~~~ 166 (310)
T 2esn_A 88 LEEWRPFVPGQSQRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHE-RLPE 166 (310)
T ss_dssp TGGGSCCCTTTCCCEEEEECCHHHHHHHHHHHHHHHHHHSTTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTC-CCCT
T ss_pred hccccCCChhhcCceEEEEeChHHHHHHHHHHHHHHHHHCCCeEEEEEeCCcccHHHHHHcCCCCEEEecCcccc-cCCc
Confidence 98776654 3567899999999999999999999999999999999999988889999999999999996 44 5678
Q ss_pred CceeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHh
Q psy3760 157 KLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236 (306)
Q Consensus 157 ~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (306)
++...++++++++++++++||++. .+++++||.++|++.+..+...+..++.++...|+.+++.+++++..++..+|.+
T Consensus 167 ~l~~~~l~~~~~~~v~~~~~pl~~-~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~ 245 (310)
T 2esn_A 167 GIQAHDWFADRYVVVARRDHPRLA-GAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGS 245 (310)
T ss_dssp TEEEEEEEEECEEEEEESSCTTCS-SSCCHHHHHTSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHT
T ss_pred CcceeeeeccceEEEEeCCCCCcC-CCCCHHHHhcCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCCCHHHHHHHHhc
Confidence 899999999999999999999985 7899999999999999877666678899999999999999999999999999999
Q ss_pred ccceeeeecceeccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhH
Q psy3760 237 RMGIGIIASIAFDSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNR 297 (306)
Q Consensus 237 g~gi~~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (306)
|.|++++|.+.+... ..++++.+|++......++|++|++++..+|.+++|++++++.+..
T Consensus 246 g~Gia~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s 307 (310)
T 2esn_A 246 TDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLYSHVQHVGRDAHAWMIGQLKGLDIS 307 (310)
T ss_dssp SSCEEEEEHHHHHHHHHHHTEEEECCSSCCCCEEEEEEEECC--CCHHHHHHHHHSCCCC--
T ss_pred CCeEEEcHHHHHHHHhhcCCceEecCCCCCCCeeEEEEEeCcccCCHHHHHHHHHHHHhccc
Confidence 999999999988765 5678999999876667899999999999999999999999877543
No 5
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=100.00 E-value=1.1e-59 Score=390.25 Aligned_cols=302 Identities=42% Similarity=0.777 Sum_probs=195.4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+++|+||++||++||+||||||++|++||++||++||+|+++|+++||++|+.|+++++++++.++++
T Consensus 1 M~l~~L~~F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~r~~~~lT~~G~~l~~~a~~~l~~~~~~ 80 (324)
T 1al3_A 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPAGQEIIRIAREVLSKVDAI 80 (324)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhCCEEEEECCCCcceeCHhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999966999999999999999999999999999999999999997139999999999999999999999
Q ss_pred HHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCcee
Q psy3760 81 KKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLIS 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~ 160 (306)
...+........|.|+||++++++..++++++..|.+.||++++++...++.++.+.|.+|++|++|+.......+++..
T Consensus 81 ~~~~~~~~~~~~g~l~I~~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~~l~~ 160 (324)
T 1al3_A 81 KSVAGEHTWPDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVM 160 (324)
T ss_dssp -------CCCCEEEEEEEECHHHHHHTSHHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCTTSCEEE
T ss_pred HHHHHHhhcCCCCeEEEEechhhhhhHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCceEEEEecCCCCCCCeeE
Confidence 98888777777899999999999999999999999999999999999999999999999999999999644345688999
Q ss_pred eccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccce
Q psy3760 161 IPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240 (306)
Q Consensus 161 ~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi 240 (306)
.++++++++++++++||++.+.+++++||.++|+|.+..+...+..+++++...|+.+++.+++++..++..+|.+|.|+
T Consensus 161 ~~L~~~~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~G~Gi 240 (324)
T 1al3_A 161 LPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV 240 (324)
T ss_dssp EEEEEECEEEEECTTSTTTTTSCCCHHHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTSCE
T ss_pred EEecCCceEEEEcCCCccccCCCCCHHHHhCCCeEEecCCCcHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHhCCCe
Confidence 99999999999999999998889999999999999998877777788899999999999999999999999999999999
Q ss_pred eeeecceecccccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHh
Q psy3760 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINK 302 (306)
Q Consensus 241 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 302 (306)
+++|.+.+.....++++.+|+++......+|++|+++...++.++.|++++++.+.+...++
T Consensus 241 ailp~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~fi~~l~~~~~~~~~~~ 302 (324)
T 1al3_A 241 GVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVVDT 302 (324)
T ss_dssp EEEEGGGCCTTTCTTSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCTTCCHHHHHH
T ss_pred EEechhhhhhhccCCeEEEECCCCCcceEEEEEEeCCCCCCHHHHHHHHHHHHHhccchhhh
Confidence 99999887655457799999987666789999999999999999999999999887766654
No 6
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=100.00 E-value=5.6e-59 Score=384.03 Aligned_cols=292 Identities=18% Similarity=0.255 Sum_probs=183.3
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+++| ||++||++||+||||||++|++||++||++||+|+++|+ +||++|+.|+++++++++.++++
T Consensus 1 m~l~~L~~F~~va~~g-s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~r~~-~lT~~G~~l~~~a~~il~~~~~~ 78 (312)
T 2h9b_A 1 MELRHLRYFVAVVEEQ-SFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPV-KTTPEGHFFYQYAIKLLSNVDQM 78 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHhC-CHHHHHHHhcCCccHHHHHHHHHHHHhCCEeEeeCCCCc-eECHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCcee
Q psy3760 81 KKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLIS 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~ 160 (306)
...++....... .|+||++++++..++++++..|.+.||++++++...++.++.+.|.+|++|++|+..+ ...+++..
T Consensus 79 ~~~~~~~~~~~~-~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~-~~~~~l~~ 156 (312)
T 2h9b_A 79 VSMTKRIASVEK-TIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLK-ISDPAIKH 156 (312)
T ss_dssp ----------CC-EEEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSC-CCCTTEEE
T ss_pred HHHHHHHhCCCC-eEEEEechhhhHhhHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCC-CCCCCceE
Confidence 998887766667 9999999999999999999999999999999999999999999999999999999654 56678999
Q ss_pred eccccceEEEEecCCCCCCC-CCC-cChhhhcCCCeEeecCC--CCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHh
Q psy3760 161 IPCYQWEYVIIVPLDHPLLL-LNS-ISLKEISNYPLITYDLS--FSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236 (306)
Q Consensus 161 ~~l~~~~~~~v~~~~~~l~~-~~~-i~~~dl~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (306)
.++++++++++++++||++. +.. ++++||.++|+|.+... ...+..+..++...|+.+++.+++++..++..+|.+
T Consensus 157 ~~L~~~~~~~v~~~~hpla~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~ 236 (312)
T 2h9b_A 157 SLLRNERLMVAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAA 236 (312)
T ss_dssp EEEEEEEEEEEEETTSGGGGGTTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHT
T ss_pred EEeecceEEEEEcCCCccccccCCCCCHHHHcCCCEEEeCCCCCchHHHHHHHHHHHcCCCCCceEEecCHHHHHHHHHc
Confidence 99999999999999999987 666 99999999999997654 346778889999999999999999999999999999
Q ss_pred ccceeeeecceecccccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHH
Q psy3760 237 RMGIGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 237 g~gi~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (306)
|.|++++|.+.+.. ..++++.+|+++.....++|++|+++. .+|.++.|++++++.+.+.
T Consensus 237 g~Gia~lp~~~~~~-~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~~~~f~~~l~~~~~~~ 296 (312)
T 2h9b_A 237 GEGISLVPASTQSI-QLFNLSYVPLLDPDAITPIYIAVRNME-ESTYIYSLYETIRQIYAYE 296 (312)
T ss_dssp TSCBEEEEGGGGGB-CCTTEEEEEBCSTTCEEEEEEEEETTC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEecchhhhc-CCCCeEEEECCCCcccceEEEEEcCCC-CCHHHHHHHHHHHHhhccc
Confidence 99999999988754 346788999987666789999999987 6999999999999987654
No 7
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=100.00 E-value=9.8e-59 Score=382.44 Aligned_cols=293 Identities=19% Similarity=0.252 Sum_probs=183.4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+++| ||++||++||+||||||++|++||++||++||+|+++|+ +||++|+.|+++++++++.++++
T Consensus 1 m~l~~L~~F~~vae~g-S~s~AA~~L~isq~avS~~I~~LE~~lG~~Lf~R~~r~v-~lT~~G~~l~~~a~~il~~~~~~ 78 (313)
T 2h98_A 1 MELRHLRYFVTVVEEQ-SISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERGFRPA-KVTEAGMFFYQHAVQILTHTAQA 78 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhC-CHHHHHHHhCCCccHHHHHHHHHHHHhCCeeEEcCCCCe-EECHhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCcee
Q psy3760 81 KKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLIS 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~ 160 (306)
...++....... .|+||++++++..++++++..|.+.||++++++...++.++.+.|.+|++|++|+..+ ...+++..
T Consensus 79 ~~~~~~~~~~~~-~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~-~~~~~l~~ 156 (313)
T 2h98_A 79 SSMAKRIATVSQ-TLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRLK-ITDPAIRR 156 (313)
T ss_dssp ----------CC-EEEEEECGGGGGTTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHTSCSEEEESSC-CCCTTEEE
T ss_pred HHHHHHhhCCCc-EEEEEechHhHHhHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHHcCCCCEEEEeCC-CCCCCeeE
Confidence 998887766667 9999999999999999999999999999999999999999999999999999999654 56678999
Q ss_pred eccccceEEEEecCCCCCCC-CCC-cChhhhcCCCeEeecCC--CCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHh
Q psy3760 161 IPCYQWEYVIIVPLDHPLLL-LNS-ISLKEISNYPLITYDLS--FSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236 (306)
Q Consensus 161 ~~l~~~~~~~v~~~~~~l~~-~~~-i~~~dl~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (306)
.++++++++++++++||++. +.. ++++||.++|+|.+... ...+..+.+++...|+.+++.+++++..++..++.+
T Consensus 157 ~~L~~~~~~~v~~~~hpl~~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (313)
T 2h98_A 157 IMLHKEQLKLAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAA 236 (313)
T ss_dssp EEEEEEEEEEEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSSHHHHHHHHHHHTTCCCSCEEECSCHHHHHHHHHT
T ss_pred EEeeeCcEEEEEcCCCcccccCCCCcCHHHHcCCCEEEecCCCCchHHHHHHHHHHHcCCCCCceEEeCCHHHHHHHHHc
Confidence 99999999999999999987 666 99999999999997654 346677889999999999999999999999999999
Q ss_pred ccceeeeecceecccccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHH
Q psy3760 237 RMGIGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKF 299 (306)
Q Consensus 237 g~gi~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (306)
|.|++++|.+++.. ..+++..+|+++.....++|++|+++. .+|.+++|++++++.+.+..
T Consensus 237 g~Gia~lp~~~~~~-~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~~~~f~~~l~~~~~~~~ 297 (313)
T 2h98_A 237 GEGVCIVPASAMDI-GVKNLLYIPILDDDAYSPISLAVRNMD-HSNYIPKILACVQEVFATHH 297 (313)
T ss_dssp TSCBEEEEGGGGGS-CCTTEEEEEBCSTTCEEEEEEEEETTC-CCTHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEeehhhhhc-CCCCeEEEECCCCCccceEEEEEcCCC-CCHHHHHHHHHHHHHhcccc
Confidence 99999999988754 346788899987566789999999987 68999999999998876544
No 8
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=100.00 E-value=1.9e-59 Score=387.25 Aligned_cols=295 Identities=15% Similarity=0.167 Sum_probs=191.0
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+++| ||++||++||+||||||++|++||++||++||+|+++++ +||++|+.|+++++++++.++++
T Consensus 14 m~l~~L~~f~~v~~~g-s~t~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~r~~-~lT~~G~~l~~~a~~~l~~~~~~ 91 (315)
T 1uth_A 14 IDLNLLVVFNQLLLDR-SVSTAGEKLGLTQPAVSNSLKRLRTALNDDLFLRTSKGM-EPTPYALHLAEPVIYALNTLQTA 91 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCcceeecCCCc-cCCHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999 999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHhhcc-CCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCce
Q psy3760 81 KKIGKEFSA-YDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLI 159 (306)
Q Consensus 81 ~~~~~~~~~-~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~ 159 (306)
...++.... ...|.|+||++++++..++++++..|.+.||++++++...++.++.+.|.+|++|++|+..+ ...+++.
T Consensus 92 ~~~~~~~~~~~~~~~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~-~~~~~l~ 170 (315)
T 1uth_A 92 LTTRNSFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLP-ELQTGFF 170 (315)
T ss_dssp --CCSSCCTTTCCCEEEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCT-TCCTTEE
T ss_pred hccCCCCCccccceEEEEEechHHHHHHHHHHHHHHHHHCCCcEEEEEeCCcccHHHHHHCCCCCEEEecCC-CCCCCce
Confidence 876665433 35789999999998889999999999999999999999999889999999999999999654 4567899
Q ss_pred eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccc
Q psy3760 160 SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239 (306)
Q Consensus 160 ~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~g 239 (306)
..++++++++++++++||++. .+++++||.++|++.+......+..+++++...|+.+++.+++++..++..+|.+|.|
T Consensus 171 ~~~l~~~~~~~v~~~~hpl~~-~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~g 249 (315)
T 1uth_A 171 QRRLFRHRYVCMFRKDHPSAK-SPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDL 249 (315)
T ss_dssp EEEEEEECEEEEEETTCSSCC-SSCCHHHHHHSEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTSSC
T ss_pred EEEeeccceEEEEeCCCCCcC-CCCCHHHHhcCCeEEEecCCCCCCchhHHHHhcCCCceEEEECCcHHHHHHHHhcCCE
Confidence 999999999999999999987 7899999999999988765555667889999999999999999999999999999999
Q ss_pred eeeeecceeccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHH
Q psy3760 240 IGIIASIAFDSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKF 299 (306)
Q Consensus 240 i~~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (306)
++++|.+++... ..++++.+|++...+..++|++|++++..+|.+++|++++++.+++..
T Consensus 250 iailp~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~ 310 (315)
T 1uth_A 250 IATVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELFSEAH 310 (315)
T ss_dssp BEEEEHHHHHHHTTTTTEEEEECSSCCCCEEEEEEEEGGGTTCHHHHHHHHHHHHHHCCTT
T ss_pred EEEcHHHHHHHHhhcCCceEeCCCCCCCCccEEEEECCccCCChHHHHHHHHHHHHHHHhh
Confidence 999999888664 567899999987666789999999999999999999999999886543
No 9
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=100.00 E-value=1e-58 Score=378.69 Aligned_cols=289 Identities=11% Similarity=0.183 Sum_probs=260.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+++| ||++||++||+||||+|++|++||++||++||+|+++|+ +||++|+.|+++++++++.++++
T Consensus 1 m~l~~l~~f~~v~~~~-s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~-~lT~~G~~l~~~a~~~l~~~~~~ 78 (291)
T 3szp_A 1 MKLDDLNLFRLVVENG-SYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKL-TLTEAGERFYKDCSPLLERLASM 78 (291)
T ss_dssp CCHHHHHHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCEEEETTEE-EECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCceEeecCCCc-ccCHhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCcee
Q psy3760 81 KKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLIS 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~ 160 (306)
...++.......|.|+||++++++..++++++..|.+.||++++++...+. .+.|.+|++|++|+..+ ...+++..
T Consensus 79 ~~~~~~~~~~~~~~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~~~~~~~---~~~l~~~~~Dl~i~~~~-~~~~~l~~ 154 (291)
T 3szp_A 79 TEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQ---ADDLDPTEWDVIFRVGP-QRDSSLIA 154 (291)
T ss_dssp HHHHHTSCCSSCEEEEEEEETTTHHHHTHHHHHHHHHHCTTEEEEEEEECS---CSCCCGGGCSEEEEESC-CCCTTCEE
T ss_pred HHHHHhcccCCceEEEEeccHHHHHHHHHHHHHHHHHHCCCeEEEEEEecC---ccCccccCceEEEEecC-CCCCCeeE
Confidence 999998878888999999999999999999999999999999999996543 46888999999999765 56789999
Q ss_pred eccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccce
Q psy3760 161 IPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240 (306)
Q Consensus 161 ~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi 240 (306)
.++++++++++++++||++.+.+++++||.++|++. ..+...+......+...+..+++.+++++..++..+|.+|.|+
T Consensus 155 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~L~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Gi 233 (291)
T 3szp_A 155 RKIGEVKDILVASPQYLSSHPQPTHAEELHQHQLLK-GYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLGI 233 (291)
T ss_dssp EEEEEECEEEEECHHHHHHSCCCSSGGGGGGSCEEE-ETTBCSEEEECTTSCEEEECCCCSEEESSHHHHHHHHHTTCCE
T ss_pred EEecccceEEEECHHHHHhcCCCCCHHHHhcCCeee-cCCCCceeEEcCCCceeEEeccCceEECcHHHHHHHHHcCCcE
Confidence 999999999999999998888899999999999999 4432322333333556677788899999999999999999999
Q ss_pred eeeecceeccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhh
Q psy3760 241 GIIASIAFDSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLN 296 (306)
Q Consensus 241 ~~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 296 (306)
+++|.+.+... ..+.++.++.+.....+++|++|++++..+|.+++|++++++.+.
T Consensus 234 ailp~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~ 290 (291)
T 3szp_A 234 TLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYHL 290 (291)
T ss_dssp EEEEGGGTHHHHHTTTSEECCTTCBCCCEEEEEEECCGGGCCHHHHHHHHHHHHSCC
T ss_pred EEccHHHHHHHHhCCCeEEecCCccCCCCcEEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999876 778888886665566789999999999999999999999998753
No 10
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=100.00 E-value=1.3e-57 Score=374.97 Aligned_cols=295 Identities=15% Similarity=0.190 Sum_probs=254.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+++| ||++||++||+||||||++|++||++||++||+|+++++ +||++|+.|+++++++++.++++
T Consensus 3 ~~l~~l~~f~~v~~~g-s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~-~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
T 3hhg_A 3 TNSEELTVFVQVVESG-SFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQL-SLTEEGAQYFRRAQRILQEMAAA 80 (306)
T ss_dssp CCHHHHHHHHHHHHSS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETTSSSC-EECHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEeecCCCe-eECHhHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999 999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCcee
Q psy3760 81 KKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLIS 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~ 160 (306)
.+.+........|.|+||++++++..++++++..|.+.||++++++... +....+.+|++|++|+..+ ...+++.+
T Consensus 81 ~~~~~~~~~~~~g~l~I~~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~---~~~~~l~~~~~Dl~i~~~~-~~~~~l~~ 156 (306)
T 3hhg_A 81 ETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSS---EGYINLIERKVDIALRAGE-LDDSGLRA 156 (306)
T ss_dssp HHHHHTTSSCCCEEEEEEBCHHHHHHTHHHHHHHHHHHCTTEEEEEECC---SSSHHHHTTSSSCEEESCC-CCCSSCEE
T ss_pred HHHHHhcccCCCCcEEEEccHHHHHHHHHHHHHHHHHHCCCeEEEEEec---cchhhHhhcCccEEEEeCC-CCCCCeEE
Confidence 9999988778899999999999999999999999999999999999833 3455788999999999755 66789999
Q ss_pred eccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccce
Q psy3760 161 IPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240 (306)
Q Consensus 161 ~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi 240 (306)
.++++++++++++++||+..+.+++++||.++|+|.+..+..........+...+..+++.+++++..++.+++.+|.|+
T Consensus 157 ~~L~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~Gi 236 (306)
T 3hhg_A 157 RHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGCGI 236 (306)
T ss_dssp EEEEEEEEEEEECHHHHHHHCCCSSTTGGGGSCBCEESSTTTSCEEEEECSSSCEEECCCSSEESSHHHHHHHHHTTSCE
T ss_pred EEeeeeEEEEEECHHHHHhcCCCCCHHHHhcCCEEEecCCCCCcceEEEcCCCcEEeccCeEEECCHHHHHHHHHhCCCe
Confidence 99999999999999998888888999999999999887755432221112222344566678999999999999999999
Q ss_pred eeeecceeccc-ccCCceeeecCCCCc-cceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHH
Q psy3760 241 GIIASIAFDSN-RDKNLRSISASHLFG-TTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFIN 301 (306)
Q Consensus 241 ~~~p~~~~~~~-~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 301 (306)
+++|.+.+... ..+.++.+......+ ..++|++|+++...+|++++|++++++.+++....
T Consensus 237 a~lp~~~~~~~~~~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~~ 299 (306)
T 3hhg_A 237 VCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGNNLCG 299 (306)
T ss_dssp EEEEHHHHHHHHHHTSSEECSTTTBCCCEEEEEEEECSGGGGCHHHHHHHHHHHHHCC-----
T ss_pred EeccHHHHHHHHhCCCcEEeCCCCcCCCCccEEEEecCCCcCCHHHHHHHHHHHHHccccccc
Confidence 99999998876 677888763333222 56999999999999999999999999998765543
No 11
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.9e-55 Score=358.22 Aligned_cols=285 Identities=13% Similarity=0.083 Sum_probs=256.0
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
||+++|++|++|+++| ||++||++||+||||||++|++||++||++||+|+ +|+ +||++|+.|+++++++++.++++
T Consensus 6 m~l~~L~~f~~v~~~g-s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~-~~~-~lT~~G~~l~~~a~~~l~~~~~~ 82 (303)
T 3isp_A 6 LDGPQLAALAAVVELG-SFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVRE-KPC-RATTAGIPLLRLAAQTALLESEA 82 (303)
T ss_dssp CCSHHHHHHHHHHHHT-CHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEECS-SSC-EECGGGHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-CHHHHHHHhCCChHHHHHHHHHHHHHhCCeeEEcC-CCC-eeCchHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 99999999999999999999999999999999998 598 79999999999999999999999
Q ss_pred HHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCcee
Q psy3760 81 KKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLIS 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~ 160 (306)
...++.......|.|+||+++++...++++++..| + ++.+++...++.++.+.|.+|++|++|+..+ ...+++..
T Consensus 83 ~~~~~~~~~~~~g~l~Ig~~~~~~~~~l~~~l~~f--~--~v~i~~~~~~~~~~~~~l~~g~~D~~i~~~~-~~~~~l~~ 157 (303)
T 3isp_A 83 LAEMGGNASLKRTRITIAVNADSMATWFSAVFDGL--G--DVLLDVRIEDQDHSARLLREGVAMGAVTTER-NPVPGCRV 157 (303)
T ss_dssp TTTTC--CTTCCEEEEEEECHHHHHTTGGGGGTTC--C--SEEEEEEECCHHHHHHHHHTTSCSEEEESCC-SCCTTEEE
T ss_pred HHHhhhccccCCceEEEeechhHHHHHHHHHHHhh--c--cceEEEEecChHHHHHHHHcCcceEEEecCC-CCCCCeEE
Confidence 88777766778899999999999999999999999 3 9999999999999999999999999999654 56689999
Q ss_pred eccccceEEEEecCCCCCCC-CCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccc
Q psy3760 161 IPCYQWEYVIIVPLDHPLLL-LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239 (306)
Q Consensus 161 ~~l~~~~~~~v~~~~~~l~~-~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~g 239 (306)
.++++++++++++++||+.. ++.++++||.++|+|.+..+...+..+...+...++.+ +.+++++..++..+|.+|.|
T Consensus 158 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~g~G 236 (303)
T 3isp_A 158 HPLGEMRYLPVASRPFVQRHLSDGFTAAAAAKAPSLAWNRDDGLQDMLVRKAFRRAITR-PTHFVPTTEGFTAAARAGLG 236 (303)
T ss_dssp EEEEEEEEEEEECHHHHHHHCTTCSCTTTTTTSCBCCSSTTCCHHHHHHHHHHSSCCCC-CBCCCCSHHHHHHHHHTTSC
T ss_pred EEccceeEEEEecchHhhhccccCCCHhHhccCCceecCCCCcHHHHHHHHHhhcccCC-ceEEECCHHHHHHHHHhCCe
Confidence 99999999999999999876 45789999999999999887777777777777778887 78899999999999999999
Q ss_pred eeeeecceeccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHH
Q psy3760 240 IGIIASIAFDSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 240 i~~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (306)
++++|.+.+... ..+.++.++ ... .+++++|++++..+|.+++|++++++.+++.
T Consensus 237 i~~lp~~~~~~~~~~~~l~~l~--~~~--~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~ 292 (303)
T 3isp_A 237 WGMFPEKLAASPLADGSFVRVC--DIH--LDVPLYWQCWKLDSPIIARITDTVRAAASGL 292 (303)
T ss_dssp BEEEEHHHHHHHHHHSSCEESS--SCC--EEEEEEEEEESSCCHHHHHHHHHHHHHTTTS
T ss_pred EEeccHHHHhhhhcCCCeEEec--CCC--CccceEEecCCCCChHHHHHHHHHHHHHHHh
Confidence 999999988776 566665544 322 7999999999999999999999999988654
No 12
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=100.00 E-value=6.4e-56 Score=363.62 Aligned_cols=290 Identities=14% Similarity=0.153 Sum_probs=175.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKKI 83 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~ 83 (306)
++|+||++|+++| ||++||++||+||||||++|++||++||++||+|+++|+ +||++|+.|+++++++++.++++...
T Consensus 1 ~~L~~f~~v~~~~-s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~-~lT~~G~~l~~~a~~~l~~~~~~~~~ 78 (300)
T 3mz1_A 1 QGMRAFLRVVETG-NFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRV-LVTPDGALYYERAARLLSDLDELDGS 78 (300)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHhcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEecCCCce-eeCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999 999999999999999999999999999999999999999 89999999999999999999999998
Q ss_pred HHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeecc
Q psy3760 84 GKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPC 163 (306)
Q Consensus 84 ~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l 163 (306)
++.......|.|+||++++++..++++++..|.+.||++++++...+.. ..+.+|++|++|+..+ ...+++.+.++
T Consensus 79 ~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~f~~~~P~v~i~~~~~~~~---~~l~~~~~Dl~i~~~~-~~~~~l~~~~l 154 (300)
T 3mz1_A 79 LSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLGVSDRT---IDYLAENVDCAIRAGT-LTDQSLIARRI 154 (300)
T ss_dssp ------CCCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECCCC-----CCCTTCCEEEEESS-CSCTTSEEEEE
T ss_pred HHhhccCCCceEEEEecHHHHHHHHHHHHHHHHHHCCCcEEEEEeCCCc---ccccccCCcEEEEecc-CCCCCeEEEEe
Confidence 8887777889999999999999999999999999999999999875442 3688999999999755 66789999999
Q ss_pred ccceEEEEecCCCCCCCCCCcChhhhcCCCeEe-ecCCCC---cHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccc
Q psy3760 164 YQWEYVIIVPLDHPLLLLNSISLKEISNYPLIT-YDLSFS---GRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239 (306)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~g 239 (306)
++++++++++++||+..+.+++++||.++|++. +..... ....+...+...++.+++.+++++..++..++.+|.|
T Consensus 155 ~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~G 234 (300)
T 3mz1_A 155 TEMKFVACASRDFLERHPVPQHPSDLEKNCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTMAANESTTYLAAARAGLG 234 (300)
T ss_dssp EEECEEEEEEHHHHHHSCCCSSGGGGGTTSCEEEEBCCC--CBCCEEEEETTEEEEECCCEEEEESSHHHHHHHHHTTCC
T ss_pred ecceeEEEECHHHHHhCCCCCCHHHHHhChhhhhccccccCcCcceEEecCCceEEEeccceEEECCHHHHHHHHHhCCC
Confidence 999999999999998888889999999999998 654321 1112233334445788999999999999999999999
Q ss_pred eeeeecceeccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHH
Q psy3760 240 IGIIASIAFDSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKF 299 (306)
Q Consensus 240 i~~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (306)
++++|.+.+... ..+.++.++.+.....++++++|++++..+|.+++|++++++.+++..
T Consensus 235 i~~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~ 295 (300)
T 3mz1_A 235 VIQAPLFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWVVKVMAQSQ 295 (300)
T ss_dssp BEEEEHHHHHHHHHHTSEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHT
T ss_pred EEeccHHHHHHHHhCCCeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHHHHHHHHhhhhh
Confidence 999999998776 678888887776677889999999999999999999999999987653
No 13
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=100.00 E-value=3.6e-35 Score=232.36 Aligned_cols=231 Identities=18% Similarity=0.281 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCee
Q psy3760 65 AILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQAD 144 (306)
Q Consensus 65 ~l~~~a~~il~~~~~~~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~D 144 (306)
.|+++|+++++.++++.+.++.......|+|+||++++++..++++++..|.++||++++++...++.++.+.|.+|++|
T Consensus 2 ~l~~~a~~il~~~~~~~~~~~~~~~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~~~~~~~~~~~~~l~~g~~D 81 (238)
T 2hxr_A 2 VWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELD 81 (238)
T ss_dssp -----------------------------CEEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcccCCeEEEeechhhHHHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHcCCCc
Confidence 47899999999999999988887777789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccCCCCCceeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEe
Q psy3760 145 IAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLET 224 (306)
Q Consensus 145 i~i~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (306)
++|+..+ ...+++.+.++++++++++++++||++.+..++++||.++|+|.+..+...+..+..++...|+.+++.+++
T Consensus 82 l~i~~~~-~~~~~l~~~~l~~~~~~~v~~~~hpl~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (238)
T 2hxr_A 82 VGIAFAP-VHSPELEAIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEA 160 (238)
T ss_dssp EEEEESS-CCCTTEEEEEEEEEEEEEEEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEcCC-CCcccceeeeeccCcEEEEEcCCCcccccCCCCHHHHhcCCeEEecCCccHHHHHHHHHHHcCCCCCeEEEe
Confidence 9999654 456789999999999999999999999888899999999999999887666777889999999999999999
Q ss_pred cCHHHHHHHHHhccceeeeecceecccccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHH
Q psy3760 225 INSDIIKTYVELRMGIGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 225 ~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (306)
++..+++++|.+|.|++++|.+.+. ..++++.+|++.....+.++++|+++...++.+++|++++++.+.+.
T Consensus 161 ~~~~~~~~~v~~g~Gi~~lp~~~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~ 232 (238)
T 2hxr_A 161 NSISAVLELIRRTSLSTLLPAAIAT--QHDGLKAISLAPPLLERTAVLLRRKNSWQTAAAKAFLHMALDKCAVV 232 (238)
T ss_dssp SCHHHHHHHHHHSSCBEEEETHHHH--HCTTEEEEEESSCSCEEEEEEEEETTSCCCHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHcCCcEEEecHHHhc--cCCCeEEEecCCCCeeEEEEEEEeCCCccCHHHHHHHHHHHHhcccC
Confidence 9999999999999999999998876 46789999987656677999999999999999999999999877543
No 14
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=100.00 E-value=9.7e-33 Score=217.01 Aligned_cols=216 Identities=39% Similarity=0.718 Sum_probs=192.9
Q ss_pred HhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccc
Q psy3760 85 KEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCY 164 (306)
Q Consensus 85 ~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~ 164 (306)
+.......|+|+||++++++..++++++..|.++||++++++...++.++.+.|.+|++|++|+.......+++...+++
T Consensus 6 ~~~~~~~~g~lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~l~~~~l~ 85 (228)
T 2fyi_A 6 SHMTNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWF 85 (228)
T ss_dssp CCTTTTCCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTTCTTEEEEEEE
T ss_pred HHhcCCCcceEEEeeccchHHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCccEEEEecccCCCCCceEEEee
Confidence 34455678899999999999999999999999999999999999999999999999999999996443346789999999
Q ss_pred cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeee
Q psy3760 165 QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIA 244 (306)
Q Consensus 165 ~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p 244 (306)
+++++++++++||++.+..++++||.++|+|.+..+...+..+..++...|+.+++.+++++..++..+|.+|.|++++|
T Consensus 86 ~~~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G~Gia~lp 165 (228)
T 2fyi_A 86 RWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVA 165 (228)
T ss_dssp EECEEEEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTSCEEEEE
T ss_pred ecceEEEecCCCCccccCccCHHHHcCCCeEEecCCccHHHHHHHHHHHcCCCcceEEEeCCHHHHHHHHHhCCCEEEee
Confidence 99999999999999988889999999999999988777777888999999999999999999999999999999999999
Q ss_pred cceecccccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHH
Q psy3760 245 SIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
.+.+.....++++.+|+++......++++|++++..++.++.|++++++.+.+...
T Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 221 (228)
T 2fyi_A 166 EQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDI 221 (228)
T ss_dssp GGGGSTTCCTTEEEECCTTTSCCEEEEEEEETTCCBCHHHHHHHHHHCSSSCHHHH
T ss_pred hHhhhhcccCCeEEEECCCcccceEEEEEEeCCCcCCHHHHHHHHHHHHhhhhhHH
Confidence 98775543567999998875556799999999999999999999999988766544
No 15
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.8e-32 Score=217.21 Aligned_cols=220 Identities=15% Similarity=0.081 Sum_probs=192.0
Q ss_pred HHHHHHHHhhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCC
Q psy3760 78 EGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDK 157 (306)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~ 157 (306)
+++............|.|+||++++++..++++++..|.+.||++++++...++.++.+.|.+|++|++|+..+ ...++
T Consensus 4 ~~l~~~~~~~~~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~-~~~~~ 82 (241)
T 3oxn_A 4 RQLLSPVEFDPQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPT-GPVEP 82 (241)
T ss_dssp ----------CCSCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCS-SCCTT
T ss_pred hhcCCCCCcCcccCCceEEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCcccHHHHHHcCCCCEEEecCC-CCCcc
Confidence 33343333334567899999999999999999999999999999999999999999999999999999999654 57789
Q ss_pred ceeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhc
Q psy3760 158 LISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELR 237 (306)
Q Consensus 158 ~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 237 (306)
+.+.++++++++++++++||++. ..++++||.++|+|.+..+...+..+++++... +.+++.+++++..++.++|.+|
T Consensus 83 ~~~~~l~~~~~~~v~~~~hpl~~-~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~g 160 (241)
T 3oxn_A 83 LRSEILGRVGVLCLLSKQHPLAN-QEMSLDDYLSHPHAMIAISDGVKALIEQALIDK-PQRKMVLRAYHLEAALAIVDTL 160 (241)
T ss_dssp EEEEEEECCCEEEEEETTSGGGG-SCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTS-CCCEEEEECSSTHHHHHHC--C
T ss_pred ceeEEeecccEEEEEeCCCCccc-CCCCHHHHhcCCeEEEecCCCccchhHHHHHhh-ccceEEEECCcHHHHHHHHhCC
Confidence 99999999999999999999998 889999999999999988877788889999999 9999999999999999999999
Q ss_pred cceeeeecceeccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHH
Q psy3760 238 MGIGIIASIAFDSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 238 ~gi~~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
.|++++|.+.+... ..++++.+|++.....+.++++|+++...++.+++|++++++.+++...
T Consensus 161 ~giailp~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (241)
T 3oxn_A 161 PIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSRLIA 224 (241)
T ss_dssp CCEEEEEHHHHHHHHHHTTEEEECCSSCCCCCCEEEEEEGGGTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEcHHHHHHHhcccCCceEeCCCCCCCcccEEEEEcCcCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999999998876 5689999999876677899999999999999999999999999876543
No 16
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=100.00 E-value=2.1e-32 Score=213.91 Aligned_cols=209 Identities=19% Similarity=0.193 Sum_probs=193.6
Q ss_pred cCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccccceE
Q psy3760 89 AYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEY 168 (306)
Q Consensus 89 ~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~~~~ 168 (306)
.+..|+|+||+++++...++++++..|.+.||++++++...++.++.+.|.+|++|++|+..+ ...+++.+.+++++++
T Consensus 4 ~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~-~~~~~~~~~~l~~~~~ 82 (222)
T 4ab5_A 4 EGEAGELRIAVECHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEA-EKQNGISFQPLFAYEM 82 (222)
T ss_dssp -CTTEEEEEECCCTTTHHHHHHHHHHHHHHSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCC-CCCTTEEEEEEEEEEE
T ss_pred CCccceEEEEEehHHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCC-CCcCCeEEEEeecCcE
Confidence 456789999999999999999999999999999999999999999999999999999999654 5678899999999999
Q ss_pred EEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee
Q psy3760 169 VIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF 248 (306)
Q Consensus 169 ~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~ 248 (306)
+++++++||++.+..++++||.++|++.+..+...+..+.+++...++.++ .+++++..++..++.+|.|++++|.+.+
T Consensus 83 ~~v~~~~~pl~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~g~gi~~~p~~~~ 161 (222)
T 4ab5_A 83 VGICAPDHPLAAKNVWTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPP-RRHSELTIAIIQLVASRRGIAALPYWTV 161 (222)
T ss_dssp EEEECTTSGGGGCSEECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCC-EEECSCHHHHHHHHHTTSCBEEEEHHHH
T ss_pred EEEecCCChhhccCCcCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCC-eEecCCHHHHHHHHHcCCeEEEcchHHh
Confidence 999999999999999999999999999999887888899999999999999 9999999999999999999999999988
Q ss_pred ccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHH
Q psy3760 249 DSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKF 299 (306)
Q Consensus 249 ~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (306)
... ..++++.+|+++....+.++++|++++..++.+++|++++++.+.+..
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~ 213 (222)
T 4ab5_A 162 MPYLEKGYVVHRQITADGLQSKLYAAIRTEDTDKSYLNNFCQIIRERGFADL 213 (222)
T ss_dssp HHHHHTTSCEEEEESTTCCEEEEEEEEEGGGTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhcCcEEEEecCCCccceEEEEEEeCCcccCHHHHHHHHHHHhhhhccc
Confidence 765 678899999998677889999999999999999999999999876643
No 17
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.4e-32 Score=216.41 Aligned_cols=212 Identities=18% Similarity=0.167 Sum_probs=192.7
Q ss_pred hhccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeecccc
Q psy3760 86 EFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQ 165 (306)
Q Consensus 86 ~~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~ 165 (306)
..+....|.|+||+++++...++++++..|.+.||++++++....+.++.+.|.+|++|++|+..+ ...+++.+.++++
T Consensus 4 ~~~~~~~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~-~~~~~l~~~~l~~ 82 (232)
T 3ho7_A 4 EEQQSLTGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASK-AETEGLEDDLLYY 82 (232)
T ss_dssp ------CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSC-CCCTTEEEEEEEE
T ss_pred hhhcccceeEEEEeccccchhhhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCC-CCCCCeEEEEecc
Confidence 344567789999999999999999999999999999999999999999999999999999999765 5568999999999
Q ss_pred ceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCc-eeEEEEecCHHHHHHHHHhccceeeee
Q psy3760 166 WEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLT-PYIVLETINSDIIKTYVELRMGIGIIA 244 (306)
Q Consensus 166 ~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~g~gi~~~p 244 (306)
++++++++++||++.+..++++||.++|+|.+..+...+..+.+++...++. +++.+++++..++..++.+|.|++++|
T Consensus 83 ~~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p 162 (232)
T 3ho7_A 83 EEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESGQGITFIP 162 (232)
T ss_dssp EEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHHHTTCCEEEEE
T ss_pred cCEEEEEcCCCccccCCCcCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCHHHHHHHHHcCCcEEEec
Confidence 9999999999999999999999999999999988877888899999999997 999999999999999999999999999
Q ss_pred cceeccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHH
Q psy3760 245 SIAFDSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 245 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (306)
.+.+... ..++++.+|+++....+.++++|++++..++.+++|++++++.+++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (232)
T 3ho7_A 163 QLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRSAVPSD 217 (232)
T ss_dssp GGGGGGSCHHHHTTEECBCSSEEEEEEEEEEETTCSCHHHHHHHHHHHHTTSCGG
T ss_pred HHHhhhhcccCceEEEEccCCCceEEEEEEEeCCCccCHHHHHHHHHHHHHhccc
Confidence 9999866 66789999998767788999999999989999999999999988654
No 18
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=100.00 E-value=3.7e-32 Score=212.20 Aligned_cols=207 Identities=13% Similarity=0.115 Sum_probs=184.8
Q ss_pred CCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccccceEE
Q psy3760 90 YDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYV 169 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~~~~~ 169 (306)
...|+|+||++++++..++++++..|.++||++++++...++.++.+.|.+|++|++|+..+ ...+++.+.++++++++
T Consensus 5 ~~~g~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~-~~~~~l~~~~l~~~~~~ 83 (218)
T 2y7p_A 5 ASTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLP-ELQTGFFQRRLFRHRYV 83 (218)
T ss_dssp TCCCEEEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCT-TCCTTEEEEEEEEECEE
T ss_pred ccceEEEEEecHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCcccHHHHHhCCCceEEEecCC-CCCcceeEEEeeeccEE
Confidence 45789999999999999999999999999999999999999999999999999999998643 44578999999999999
Q ss_pred EEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeecceec
Q psy3760 170 IIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFD 249 (306)
Q Consensus 170 ~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~ 249 (306)
++++++||++. ..++++||.++|++........+..+++++...|+.+++.+++++..++..+|.+|.|++++|...+.
T Consensus 84 ~v~~~~hpla~-~~i~l~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~g~Giailp~~~~~ 162 (218)
T 2y7p_A 84 CMFRKDHPSAK-SPMSLKQFTELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQRFAV 162 (218)
T ss_dssp EEEETTCSSCC-SSCCHHHHHHSEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTSSCBEEEEHHHHH
T ss_pred EEEcCCCCCCC-CCCCHHHHhhCCCEEeecCCCccCHHHHHHHhcCCcceEEEEcCcHHHHHHHHhCCCEEEEcHHHHHH
Confidence 99999999997 78999999999999876555556778999999999999999999999999999999999999998765
Q ss_pred cc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHH
Q psy3760 250 SN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 250 ~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (306)
.. ..++++.+|++.......++++|++++..+|+.++|++.+++.+++.
T Consensus 163 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (218)
T 2y7p_A 163 RCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELFSEA 212 (218)
T ss_dssp HHHHHHTEEEEECSSCCCCEEEEEEEEGGGTTCHHHHHHHHHHHHHHCCT
T ss_pred HhhhcCCceEecCCCCCCCccEEEEEccccCCChHHHHHHHHHHHHHHhh
Confidence 43 45679999998655567999999999989999999999999887654
No 19
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=100.00 E-value=4.7e-31 Score=204.50 Aligned_cols=201 Identities=14% Similarity=0.263 Sum_probs=179.6
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccccceEEE
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVI 170 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~~~~~~ 170 (306)
..|+|+||++++++..++++++..|.++||++++++...++.++.+.|.+|++|++|+... ...+++...+++++++++
T Consensus 3 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~-~~~~~l~~~~l~~~~~~~ 81 (209)
T 2ql3_A 3 VAGPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDL-DLSPEWQTVPLMTREPMV 81 (209)
T ss_dssp CCEEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESS-SCCTTEEEEEEEEECCEE
T ss_pred cceeEEEeechhhhhhhHHHHHHHHHHHCCCceEEEEECcHHHHHHHHHcCCccEEEEecC-CCCCCceEEEeecCceEE
Confidence 4689999999999999999999999999999999999999999999999999999998654 456789999999999999
Q ss_pred EecCCCCCCCCC-CcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeecce--
Q psy3760 171 IVPLDHPLLLLN-SISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIA-- 247 (306)
Q Consensus 171 v~~~~~~l~~~~-~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~-- 247 (306)
+++++||++.+. .++++||.++|+|.+.. ...+..+.+++...|+.+++.+++++..+++++|.+|.|++++|...
T Consensus 82 v~~~~hpl~~~~~~~~~~~l~~~~~i~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~ 160 (209)
T 2ql3_A 82 VLGAEHPLAGVDGPVRLADLAEHPMVLLDA-PPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRGLGWTLLLQRPRV 160 (209)
T ss_dssp EEETTCGGGGCCSCBCGGGGTTSCEEEECC-TTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHHTSCBEEESCCCSS
T ss_pred EEeCCCccccCCCCcCHHHHhCCCEEeeCC-hhHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCCeEEEeeCCccc
Confidence 999999998877 89999999999999887 56667788899999999999999999999999999999999999853
Q ss_pred ecccccCCceeeecCCCC-ccceEEEEEeCCccccHHHHHHHHHHhH
Q psy3760 248 FDSNRDKNLRSISASHLF-GTTISRVIIKQGTYLRSYVYSFIKLLSP 293 (306)
Q Consensus 248 ~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 293 (306)
......++++.+|+++.. ....++++|++++..++++++|++++++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 207 (209)
T 2ql3_A 161 DVTYEGLPVVVKPIAEPKPASVAVVVAWHQEATLSRVARAFIRFVTA 207 (209)
T ss_dssp CBCTTSCBEEEEEBCSSCCCCEEEEEEEETTCCCCHHHHHHHHHHTC
T ss_pred ccccCCCceEEEECCCCCcceEEEEEEEeCCCCCCHHHHHHHHHHhc
Confidence 222245789999988755 6679999999998889999999998864
No 20
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=100.00 E-value=6.7e-32 Score=210.53 Aligned_cols=206 Identities=17% Similarity=0.189 Sum_probs=189.6
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccccceEEE
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVI 170 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~~~~~~ 170 (306)
..|+|+||+++++...++++++..|.+.||++++++....+.++.+.|.+|++|++|+..+ ...+++.+.+++++++++
T Consensus 2 ~~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~~-~~~~~~~~~~l~~~~~~~ 80 (219)
T 3jv9_A 2 LEGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEP-FQEPGIVTEPLYDEPFFV 80 (219)
T ss_dssp -CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESS-CCCTTEEEEEEEEEEEEE
T ss_pred cCCcEEEEEcchhhHHHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcCC-CCCCCeeEEEeeeceEEE
Confidence 4689999999999999999999999999999999999999999999999999999999764 567899999999999999
Q ss_pred EecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHh-----CCCceeEEEEecCHHHHHHHHHhccceeeeec
Q psy3760 171 IVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSL-----QKLTPYIVLETINSDIIKTYVELRMGIGIIAS 245 (306)
Q Consensus 171 v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~ 245 (306)
+++++||++.+..++++||.++|++.+..+...+..+..++.. .++.++..+++++..++..++.+|.|++++|.
T Consensus 81 v~~~~~pl~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~ 160 (219)
T 3jv9_A 81 IVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPA 160 (219)
T ss_dssp EEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHTSCEEEEEG
T ss_pred EEeCCCCcccCCCCCHHHhcCCcEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcCCcEEehhH
Confidence 9999999999999999999999999998887778888888877 66778888999999999999999999999999
Q ss_pred ceecccccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhH
Q psy3760 246 IAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNR 297 (306)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (306)
+.+..+..++++.+|+++......++++|++++..++.+++|++++++.+.+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (219)
T 3jv9_A 161 TALTENDHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIMQSQLH 212 (219)
T ss_dssp GGCCTTCTTTEEEECCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHHTSCCS
T ss_pred HHHHhccCCcEEEEecCCCCcceeEEEEEecCccccHHHHHHHHHHHhhccc
Confidence 9988766778999999887778899999999999999999999999987643
No 21
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=99.98 E-value=3.4e-32 Score=212.53 Aligned_cols=206 Identities=16% Similarity=0.254 Sum_probs=182.7
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccccceEEE
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVI 170 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~~~~~~ 170 (306)
..|+|+||++++++..++++++..|.++||++++++....+.++.+.|.+|++|++|+..+ ...+++...+++++++++
T Consensus 3 ~~g~lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~-~~~~~l~~~~l~~~~~~~ 81 (219)
T 1i6a_A 3 MSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVILALV-KESEAFIEVPLFDEPMLL 81 (219)
T ss_dssp TCEEEEEEECTTTHHHHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEEECC-GGGTTSEEEEEEEEEEEE
T ss_pred CceEEEEEeccchhhhhhhHHHHHHHHHCCCeEEEEEECChHHHHHHHHcCCeeEEEecCC-CCCCCcceeeeecccEEE
Confidence 4689999999999999999999999999999999999999999999999999999998644 345789999999999999
Q ss_pred EecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeecceecc
Q psy3760 171 IVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFDS 250 (306)
Q Consensus 171 v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~ 250 (306)
+++++||++.+..++++||.++|+|....+...+..+.+++...|+.+++.+++++..+++.+|.+|.|++++|.+.+..
T Consensus 82 v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~g~Gia~lp~~~~~~ 161 (219)
T 1i6a_A 82 AIYEDHPWANREAVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPP 161 (219)
T ss_dssp EEETTSGGGGCSCEEGGGGTTSEEECCTTTTCSSCTTSSCSSCTTSEEECTTTTSCHHHHHHHHHTTSCBEEEEGGGSCS
T ss_pred EEcCCCccccCCccCHHHhcCCcEEEecCCCcHHHHHHHHHHHCCCCCCceEeeCCHHHHHHHHHhCCCEEEeehhhhhh
Confidence 99999999988889999999999999887665555556667777888888889999999999999999999999998765
Q ss_pred c-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhH
Q psy3760 251 N-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNR 297 (306)
Q Consensus 251 ~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (306)
. ..++++.+|+++......++++|+++...++.+++|++++++.+.+
T Consensus 162 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~ 209 (219)
T 1i6a_A 162 ERKRDGVVYLPAIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDG 209 (219)
T ss_dssp SSEETTEEEECEESSCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHTT
T ss_pred hccCCcEEEEECCCCcceEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 4 5678999998765566789999999998999999999999887654
No 22
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=99.96 E-value=2.3e-30 Score=200.97 Aligned_cols=206 Identities=13% Similarity=0.123 Sum_probs=172.8
Q ss_pred cCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccccceE
Q psy3760 89 AYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEY 168 (306)
Q Consensus 89 ~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~~~~ 168 (306)
....|+|+||++++++..++++++..|.++||++++++...+ . ...|.+|++|++|+..+ ...+++.+.+++++++
T Consensus 3 ~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~i~~~~--~-~~~l~~g~~D~~i~~~~-~~~~~~~~~~l~~~~~ 78 (213)
T 3hhf_B 3 EIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSE--G-YINLIERKVDIALRAGE-LDDSGLRARHLFDSRF 78 (213)
T ss_dssp --CCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEECCS--T-THHHHTTSSSEEEECC---CCSSEEEEEEEEECE
T ss_pred CCCCceEEEecCHHHHHHHHHHHHHHHHHHCCCcEEEEEeCC--c-HHHHHhCCccEEEEEec-CCCccceEEeeecceE
Confidence 346789999999999999999999999999999999999533 3 34599999999999754 5678899999999999
Q ss_pred EEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee
Q psy3760 169 VIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF 248 (306)
Q Consensus 169 ~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~ 248 (306)
+++++++||++.+..++++||.++|+|.+..+...+..+...+...+..+++.+++++..++..+|.+|.|++++|.+.+
T Consensus 79 ~~v~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~ 158 (213)
T 3hhf_B 79 RVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGCGIVCLSDFLV 158 (213)
T ss_dssp EEEECHHHHHHHCCCSSGGGGGGSCBCEESSCGGGGEEEEECTTSCEEECCCSSEESSHHHHHHHHHTTSCBEEEEHHHH
T ss_pred EEEeCHHHHHhcCCCCCHHHhcCCCeEEecCCCCccchhhhhCCCccccccCceeeCCHHHHHHHHHcCCcEEEeeHHHh
Confidence 99999999999888999999999999999887665554455556667778888999999999999999999999999998
Q ss_pred ccc-ccCCceeeecCCCCc-cceEEEEEeCCccccHHHHHHHHHHhHHhhHH
Q psy3760 249 DSN-RDKNLRSISASHLFG-TTISRVIIKQGTYLRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 249 ~~~-~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (306)
... ..+.++.+......+ .++++++|++++..++.+++|++++++.+++.
T Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (213)
T 3hhf_B 159 DNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGNN 210 (213)
T ss_dssp HHHHHHTSSEEECTTTBCCCCEEEEEEEEGGGGGCHHHHHHHHHHHHHC---
T ss_pred hHHHhcCCcEEecCCCCCCceeeEEEEEcCCCCCChHHHHHHHHHHHHhhhh
Confidence 765 667788773333333 67999999999999999999999999988754
No 23
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=99.96 E-value=4.7e-27 Score=185.70 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=170.2
Q ss_pred cCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccccceE
Q psy3760 89 AYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEY 168 (306)
Q Consensus 89 ~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~~~~ 168 (306)
....|.|+||++++++..++++++..|.++||++++++...++.++.+.|.+|++|++|+..+ .+++.+.+++++++
T Consensus 23 ~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~---~~~~~~~~l~~~~~ 99 (238)
T 3onm_A 23 SNMEGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAK---VDSHPHVILRTSPT 99 (238)
T ss_dssp ----CCEEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSC---C-CCCEEEEEEECE
T ss_pred cCCceeEEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHCCCccEEEEecC---CCCcceEEeecCCE
Confidence 456789999999999999999999999999999999999999999999999999999999754 23599999999999
Q ss_pred EEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee
Q psy3760 169 VIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF 248 (306)
Q Consensus 169 ~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~ 248 (306)
+++++++||++.+.. .|++.+..+...+..+.+++...++.+++.+++++..+++++|.+|.|++++|.+++
T Consensus 100 ~~v~~~~~~l~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Giailp~~~~ 171 (238)
T 3onm_A 100 LWYCSVDYQFQPGEP--------VPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAGLGVTARPIEMM 171 (238)
T ss_dssp EEEEETTCCCCTTSC--------EEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTTSCBEEEEGGGC
T ss_pred EEEEcCCCCcccCCC--------cceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcCCeEEEechHHc
Confidence 999999999887653 489999888778888999999999999999999999999999999999999999987
Q ss_pred cccccCCceeeecCC--CCccceEEEEEeCCccccHHHHHHHHHHhHHhhHH
Q psy3760 249 DSNRDKNLRSISASH--LFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 249 ~~~~~~~l~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (306)
. +++..+++.. +.....++++|++++..++.+++|++++++.+++.
T Consensus 172 ~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~ 219 (238)
T 3onm_A 172 S----PDLRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQHT 219 (238)
T ss_dssp C----TTEEEECGGGTCCCCCCEEEEEECCTTCCCHHHHHHHHHHHTTCC--
T ss_pred c----chheecccccCCCCccceeeEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 5 3566677654 33467899999999999999999999999987654
No 24
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=99.95 E-value=2.5e-28 Score=190.52 Aligned_cols=194 Identities=16% Similarity=0.153 Sum_probs=150.5
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEcc--ccCCCCCceeeccccceE
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTE--ILSPSDKLISIPCYQWEY 168 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~--~~~~~~~~~~~~l~~~~~ 168 (306)
..|.|+||++++++..++++.+..|.++||++++++...++. . .+.+|++|++|..+ . ...+ ...+++++++
T Consensus 17 ~~G~lrI~~~~~~~~~~L~~~l~~f~~~~P~i~l~l~~~~~~--~-~l~~~~~Dlai~~~~~~-~~~~--~~~~l~~~~~ 90 (218)
T 2qsx_A 17 DQELLVVDVTPSFASLWLVPNINDFHQRHPNIRVKILTGDGA--V-KNIHGESDLHVRCLPLS-THYE--YSQLLCEETL 90 (218)
T ss_dssp --CEEEEEECHHHHHHTHHHHHHHHHHHCTTCEEEEEECCSC--C------CCSEEEEEEECC-SCCS--SEEEEEEEEE
T ss_pred CCCcEEEecCHHHHHHHHHHHHHHHHHHCCCeEEEEEecCCc--c-cccCCCCCEEEEcCCCC-CCCc--cceeccCCCE
Confidence 468999999999999999999999999999999999998765 3 78899999999865 3 2223 8899999999
Q ss_pred EEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCce---eEEEEecCHHHHHHHHHhccceeeeec
Q psy3760 169 VIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTP---YIVLETINSDIIKTYVELRMGIGIIAS 245 (306)
Q Consensus 169 ~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~g~gi~~~p~ 245 (306)
++|++++|+ + +++++||.++|+|....+. ..+..|+...|..+ +..+++++..++++++.+|.|++++|.
T Consensus 91 ~~v~sp~~~-~---~~~~~dL~~~~~i~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~G~Gia~lp~ 163 (218)
T 2qsx_A 91 LLIGNTNLP-K---LSDNQAISHYPFIPQTTRP---QLWEQFKQENDLECPITYHSVGFEHFYLACEAVRMEKGLALLPD 163 (218)
T ss_dssp EEEEETTCC-----------CTTSCBCCCTTCT---THHHHHHTCC-----CCBCSBCCSSHHHHHHHHHTTCCBEEEEH
T ss_pred EEEEChhhc-c---CCCHHHHhcCCeEecCCCc---hHHHHHHHHcCCCcccCCCCceeccHHHHHHHHHhCCCEEEecH
Confidence 999999997 3 5789999999999876542 34677887777643 567889999999999999999999999
Q ss_pred ceeccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhH
Q psy3760 246 IAFDSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNR 297 (306)
Q Consensus 246 ~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (306)
+++... ..+.|+.++.+.......+|++|++++..++.++.|++++++.+.+
T Consensus 164 ~~~~~~l~~g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~ 216 (218)
T 2qsx_A 164 FMAQFSILRGDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLKDKLTH 216 (218)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCccccCccccCCCceEEEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 888665 6788888765433345789999999999999999999999987654
No 25
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=99.95 E-value=9.6e-28 Score=187.14 Aligned_cols=204 Identities=12% Similarity=0.009 Sum_probs=167.1
Q ss_pred cCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccccceE
Q psy3760 89 AYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEY 168 (306)
Q Consensus 89 ~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~~~~ 168 (306)
.+..|.|+||++++++..++++++..|.++||++++++...+.. ..|.+|++|++|+..+ ...+++...+++++++
T Consensus 8 ~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~---~~l~~g~~Dl~i~~~~-~~~~~~~~~~l~~~~~ 83 (219)
T 3kos_A 8 KQTQEKLKIGVVGTFAIGCLFPLLSDFKRSYPHIDLHISTHNNR---VDPAAEGLDYTIRYGG-GAWHDTDAQYLCSALM 83 (219)
T ss_dssp ---CEEEEEEEEHHHHHHTHHHHHHHHHHHCTTEEEEEEEECSC---CCHHHHTCSEEEEEEC-SCCTTEEEEEEEECCE
T ss_pred cCcCCcEEEEeCHHHHHHHHHhHHHHHHHHCCCceEEEEeccCc---cccccCCccEEEEeCC-CCCCCceEEEecccce
Confidence 34578999999999999999999999999999999999886653 3678999999999654 5668899999999999
Q ss_pred EEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee
Q psy3760 169 VIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF 248 (306)
Q Consensus 169 ~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~ 248 (306)
+++++++|. ...++++||.++|||.+..+..+...+...+...+..++..+++++..+++++|.+|.|++++|.+.+
T Consensus 84 ~~v~~p~~~---~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~ 160 (219)
T 3kos_A 84 SPLCSPTLA---SQIQTPADILKFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVRMF 160 (219)
T ss_dssp EEEBCHHHH---TTCSSGGGGGGSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGGGC
T ss_pred EEEeChHHh---hccCCHHHHhcCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCCCeEeehHHhh
Confidence 999998872 35799999999999999866544444444444445556788999999999999999999999999998
Q ss_pred ccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHH
Q psy3760 249 DSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 249 ~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
... ..+.++. ++........++++|+++...++.+++|++++++.+.+...
T Consensus 161 ~~~~~~~~l~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 212 (219)
T 3kos_A 161 THLLSSERIVQ-PFLTQIDLGSYWITRLQSRPETPAMREFSRWLTGVLHKTSG 212 (219)
T ss_dssp HHHHHTTSSBC-CCCCCBCSCEEEEEEETTSCCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCeec-cccCCccCCcEEEEecccccCCHHHHHHHHHHHHhhccccc
Confidence 766 5666764 44444556799999999999999999999999999876554
No 26
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=7.1e-27 Score=180.56 Aligned_cols=200 Identities=11% Similarity=0.010 Sum_probs=171.7
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCCceeeccccceEEEE
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVII 171 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~~~~l~~~~~~~v 171 (306)
.|+|+||++++++..++++++..|.++| ++++++...++.++.+.+.+|..|+++...+ ...+++.+.++++++++++
T Consensus 1 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~-~v~l~l~~~~~~~~~~~l~~g~d~~~i~~~~-~~~~~l~~~~l~~~~~~~v 78 (208)
T 3fd3_A 1 RVTLNIATNADSLGTWFLDAVSKFTGGS-DYLVNIAVDDQDHTVEWLRGGRVLAAVTAHD-KPVQGCRVTPLGVLRYHAT 78 (208)
T ss_dssp CCEEEEEECHHHHTTTHHHHHHHHHHTS-SCEEEEEECCSSCHHHHHHTTSCSEEEESCC-SCCTTCEEEEEEEEEEEEE
T ss_pred CceEEEEecHHHHHHHHHHHHHHHHhhc-CeEEEEEeCCcHhHHHHHhcCcceEEEecCC-CCCCCceEEEccceEEEEE
Confidence 4789999999999999999999999999 6999999999989999999995555566433 5668899999999999999
Q ss_pred ecCCCCCCC-CCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeecceecc
Q psy3760 172 VPLDHPLLL-LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFDS 250 (306)
Q Consensus 172 ~~~~~~l~~-~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~ 250 (306)
++++|+... ..+++++||.++|+|.+..+...+..+...+...++.+ +.+++++.++++++|.+|.|++++|.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~ 157 (208)
T 3fd3_A 79 ASPDFMARHFADGVTPAALARAPGLTFNQKDRLQASWIRTALGEDVSY-PTHWLPSTDGFVKASLAGMGWGLNPVQLVAE 157 (208)
T ss_dssp ECHHHHHHHCTTCSCHHHHTTSCEEESSTTCCHHHHHHHHHHSSCCCC-CEEECCCHHHHHHHHHTTSCBEEEEHHHHHH
T ss_pred EChHHhhhhccCCCCHHHHhcCCeEEeCCCchhHHHHHHHhcCCCCCc-ceEEECCHHHHHHHHHhCCCeecccHHHHHh
Confidence 999996665 57899999999999999887776667776677778888 9999999999999999999999999998876
Q ss_pred c-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhH
Q psy3760 251 N-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNR 297 (306)
Q Consensus 251 ~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (306)
. ..+.++.+. ++ ...+++++|++++..++++++|++++++.+++
T Consensus 158 ~~~~~~l~~~~-~~--~~~~~~l~~~~~~~~~~~~~~f~~~l~~~~~~ 202 (208)
T 3fd3_A 158 HLAAGRLVELM-PG--TPLDIPLYWQVNRLAAERLAGLTANMVGTARV 202 (208)
T ss_dssp HHHHTSSEESS-TT--CCEEEEEEEEECTTTTTTTHHHHHHHHHHHHH
T ss_pred hccCCceEEec-CC--CCccEEEEecCCCccCHHHHHHHHHHHHhhhh
Confidence 5 566666552 22 23579999999999999999999999987654
No 27
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=3.5e-27 Score=164.88 Aligned_cols=102 Identities=9% Similarity=0.012 Sum_probs=79.9
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-----CCccccCHhHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-----KRIRGLTKPGQAILRSIEIIMQ 75 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-----~~~~~lT~~G~~l~~~a~~il~ 75 (306)
||+++|++|++|+++| ||++||+.||+|||++|++|++||++||++||+|++ +++ +||++|+.|+++++++++
T Consensus 24 ~~~~~L~~f~av~e~g-S~s~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~-~LT~~G~~ll~~a~~il~ 101 (135)
T 2ijl_A 24 LGHGKVELMQLIAETG-SISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGA-ALTVFGAELLERYRGMEE 101 (135)
T ss_dssp ESHHHHHHHHHHHHHS-CHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------E-EECHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-CHHHHHHHHCcCHHHHHHHHHHHHHHHCCeeEEecCCCCCCCce-eECHHHHHHHHHHHHHHH
Confidence 6899999999999999 999999999999999999999999999999999996 588 799999999999999999
Q ss_pred HHHHH----HHHHHhhccCCCCcEEEEecccch
Q psy3760 76 EIEGL----KKIGKEFSAYDTGNLTIATTHTQA 104 (306)
Q Consensus 76 ~~~~~----~~~~~~~~~~~~~~l~I~~~~~~~ 104 (306)
.++++ .+.+...-....+.+||..+..++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 134 (135)
T 2ijl_A 102 RMNEALREDIDWLEANRNPQDALNRDREPPTLG 134 (135)
T ss_dssp HHHHHTHHHHHHHHHHBCCC-------------
T ss_pred HHHHHHHHHHHHHHHhhhcccCceeecCCCccC
Confidence 99887 344444456788999999887654
No 28
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=99.92 E-value=1.8e-23 Score=169.96 Aligned_cols=205 Identities=17% Similarity=0.222 Sum_probs=166.9
Q ss_pred cCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCC---CCceeecccc
Q psy3760 89 AYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPS---DKLISIPCYQ 165 (306)
Q Consensus 89 ~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~---~~~~~~~l~~ 165 (306)
....|.|+||++.++. .++++++..|.++||++++++...++.++.+.|.+|++|++|+..+.... +++...+++.
T Consensus 24 ~~~~g~l~Ig~~~~~~-~~l~~~l~~f~~~~P~i~v~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~~~~l~~ 102 (290)
T 1twy_A 24 FVQASEITISGSTSVA-RIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAF 102 (290)
T ss_dssp ----CEEEEEECHHHH-HHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCEEEEEEE
T ss_pred cccCCCEEEecCcchH-HHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHhcCCCcEEEecCCCchhhhhcCceEEEEEe
Confidence 3456899999999888 79999999999999999999999999999999999999999996542222 5789999999
Q ss_pred ceEEEEecCCCCCCCCCC-----------cChhhhcC----CCeEeecCCCCcHHHHHHHHHhCC--------CceeEEE
Q psy3760 166 WEYVIIVPLDHPLLLLNS-----------ISLKEISN----YPLITYDLSFSGRIKLDREFSLQK--------LTPYIVL 222 (306)
Q Consensus 166 ~~~~~v~~~~~~l~~~~~-----------i~~~dl~~----~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 222 (306)
++++++++++||++.... ++++||.+ .+++....+...+..+..++...+ ..++..+
T Consensus 103 ~~~~~v~~~~~pl~~~~~~~l~~~~~~~~~~~~dL~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (290)
T 1twy_A 103 DGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTAL 182 (290)
T ss_dssp EEEEEEECTTCCCCEECHHHHHHHHHTSCCBGGGGTSCSCBCEEEEECTTCHHHHHHHHHHTCEEEETTEEEECSCTTSE
T ss_pred eeEEEEECCCCCccccCHHHHHHHhcCCCCCccccCCCCCeeEEEecCCCchHHHHHHHHHhcccccccccccccCcccc
Confidence 999999999999875443 78999988 889988776666777777776222 2455678
Q ss_pred EecCHHHHHHHHHhc-cceeeeecceecccccCCceeeecCCC------------CccceEEEEEeCCccccHHHHHHHH
Q psy3760 223 ETINSDIIKTYVELR-MGIGIIASIAFDSNRDKNLRSISASHL------------FGTTISRVIIKQGTYLRSYVYSFIK 289 (306)
Q Consensus 223 ~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~~~~~l~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~~~~~ 289 (306)
++++...+.++|.+| .|++++|...+. ++++.+++... .....++++|+++ ..++.++.|++
T Consensus 183 ~~~~~~~~~~~v~~g~~gi~~~p~~~~~----~~l~~~~l~~~~p~~~~i~~~~~~~~~~~~l~~~~~-~~~~~~~~f~~ 257 (290)
T 1twy_A 183 VVNSNSMMKTLVNHNTQAVGFISIGSVD----KSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSD-NADEQTKEFIA 257 (290)
T ss_dssp EESSHHHHHHHHHHCTTEEEEEEGGGCC----TTSEECEETTBCCCHHHHHTTCSCCEEEEEEEECTT-TCCHHHHHHHH
T ss_pred ccCChHHHHHHHhcCCCcEEEeeHHHhh----CCceEeEecCCCCCHHHHhcCCCccEEEEEEEEcCC-CCCHHHHHHHH
Confidence 899999999999999 999999998763 46777777641 2356899999888 78999999999
Q ss_pred HHhHHhhHHH
Q psy3760 290 LLSPKLNRKF 299 (306)
Q Consensus 290 ~l~~~~~~~~ 299 (306)
++++...+..
T Consensus 258 ~l~~~~~q~~ 267 (290)
T 1twy_A 258 FLKSESAKKL 267 (290)
T ss_dssp HHHSHHHHHH
T ss_pred HHhCHHHHHH
Confidence 9987644433
No 29
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=99.91 E-value=7.7e-25 Score=170.97 Aligned_cols=185 Identities=18% Similarity=0.157 Sum_probs=131.0
Q ss_pred chhhHHHHHHHHHhcCC--------HHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec----CCCccccCHhHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQNFN--------LTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH----GKRIRGLTKPGQAILRS 69 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s--------~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~----~~~~~~lT~~G~~l~~~ 69 (306)
+-+++++|..+++.| + +++||+.|++||||+|++|++||+ ..||.|+ ++++ +||++|+.+++.
T Consensus 6 ~~~~l~~l~~l~~~~-~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~---~~L~~R~~~~R~~~v-~LT~~G~~l~~~ 80 (230)
T 3cta_A 6 DDQYYRAIKKIKEAA-EASNRAYLTSSKLADMLGISQQSASRIIIDLEK---NGYITRTVTKRGQIL-NITEKGLDVLYT 80 (230)
T ss_dssp -CHHHHHHHHHHHHT-TTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHH---TTSEEEEEETTEEEE-EECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-ccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH---CCCEEEEEcCCeEEE-EECHHHHHHHHH
Confidence 458999999999999 9 999999999999999999999999 7799999 8888 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcEEEEecccchhhh--hHHHHHHHHHh-----CCCcEEEEEeCChhHHHHHHHcCC
Q psy3760 70 IEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYA--LPKIIKEFTIQ-----FPKVKLSLLQGNPKQITEMIRNDQ 142 (306)
Q Consensus 70 a~~il~~~~~~~~~~~~~~~~~~~~l~I~~~~~~~~~~--l~~~l~~~~~~-----~p~~~i~~~~~~~~~~~~~l~~~~ 142 (306)
+.+++..+.+.. ......+.+++|++. .... +++++..|.+. ||+ ++++...++......+.++.
T Consensus 81 ~~~~~~~~~~~~-----~~~~~~~~l~~~~~~--~~~~~~l~~~l~~f~~~Lg~~P~P~-~l~l~~~~~~~~~~~~~~~~ 152 (230)
T 3cta_A 81 EFADLSRILAIK-----NNVVITGTVTSGMGE--GRYYVARKQYIIQFQEKLGIIPYLG-TLNIKVDQASLPELRKIRGF 152 (230)
T ss_dssp HHHHHHHHTTCC-----CCEEEEEEECC--------------CCHHHHHHHSCSCCCC----EEEECGGGHHHHHHHHHS
T ss_pred HHHHHHHHhhhh-----hHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCCCCCC-cEEEEecCchhHHHHHHhcC
Confidence 999998776632 233456788888844 3445 89999999999 999 99999998888888888888
Q ss_pred eeEEEEccc--cCCCCCceeecc--ccceEEEEecC-CCCCCCCCCcChhhhcCCCeEeecCCC
Q psy3760 143 ADIAIVTEI--LSPSDKLISIPC--YQWEYVIIVPL-DHPLLLLNSISLKEISNYPLITYDLSF 201 (306)
Q Consensus 143 ~Di~i~~~~--~~~~~~~~~~~l--~~~~~~~v~~~-~~~l~~~~~i~~~dl~~~~~i~~~~~~ 201 (306)
.|+++.... .....++.+.++ .+++.++++|+ .|+++..+.+++.+|.+. +.+.++.
T Consensus 153 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vv~p~~~~~~~~~~~i~~~~L~~~--l~l~~g~ 214 (230)
T 3cta_A 153 RGIHIEGFKTEDRTFGSVKAFPAKIQNIPCFVIMPERTVYTDVIEIISDKYLREE--INLHDGD 214 (230)
T ss_dssp CCEEECCEEC--CEECCEEEEEEEETTEEEEEEEESSCCCCSEEEEECC--------------C
T ss_pred CCeecCCccCCCCcEEeEEEEEEEECCEEEEEEEecccCCCCEEEEECCcchHhh--cCCCCCC
Confidence 898776321 122345667555 66999999995 344665778899999877 5555543
No 30
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=99.89 E-value=4.6e-22 Score=161.52 Aligned_cols=212 Identities=12% Similarity=0.064 Sum_probs=166.6
Q ss_pred CCCCcEEEEecccchhhhhHHHHHHHHHh---C--CCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCC----CC--c
Q psy3760 90 YDTGNLTIATTHTQARYALPKIIKEFTIQ---F--PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPS----DK--L 158 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~~~l~~~l~~~~~~---~--p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~----~~--~ 158 (306)
...|+|+||++.+.+..+++.++..|.++ | |++++++...++.++.++|.+|++|++++....... ++ +
T Consensus 17 ~~~g~L~Ig~~~~~~~~~lp~ll~~F~~~~~~~~~P~v~v~l~~~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~ 96 (294)
T 3cvg_A 17 HSPVQLRIGNGGAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVTINYLKDGIVDVGITYSPVAERISIKHGISE 96 (294)
T ss_dssp --CEEEEEEESHHHHHTHHHHHHHHHHHHHHSCC---CEEEEEECCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBC
T ss_pred CCCceEEEEeccchhHHHHHHHHHHHHhhhcccCCCCeEEEEEeCCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCccc
Confidence 46789999999888889999999999999 9 999999999999999999999999999996432110 12 2
Q ss_pred eee-ccccceEEEEecCCCC--CCCCCCc--ChhhhcC----------CCeEeecCCCCcHHHHHHHHHhCCCceeE---
Q psy3760 159 ISI-PCYQWEYVIIVPLDHP--LLLLNSI--SLKEISN----------YPLITYDLSFSGRIKLDREFSLQKLTPYI--- 220 (306)
Q Consensus 159 ~~~-~l~~~~~~~v~~~~~~--l~~~~~i--~~~dl~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--- 220 (306)
... +++.++++++++++|| ++....+ ++++|.. .|||....++..+..+..++...++.+++
T Consensus 97 ~~~~~l~~d~lvlv~~~~hp~~l~~~~~~~~~l~~L~~~~~~g~~~~~~p~i~~~~~s~~r~~~~~~~~~~g~~~~~~~~ 176 (294)
T 3cvg_A 97 SPSYYAFRDHFMLIGPPSNPAKLSGDSDIADMFSKMHDAAEAGNTKPPVRFLSRYDKSATNIKEAELWLSIGQVPWATAY 176 (294)
T ss_dssp SSCEEEEEEEEEEEECTTCTTCCCTTSCHHHHHHHHHHHHHHCCSSSCCCEEECCSSSHHHHHHHHHHHHTTCCTTSSSC
T ss_pred ceeeeEEeccEEEEecCCChhhccccccHHHHHHHHhcCcccCCCCccceeEeCCCCCcHHHHHHHHHHhcCCCcccccc
Confidence 345 8999999999999999 4444332 4889988 99999998888888899999999888874
Q ss_pred ---EEEe-cCHHHHHHHHHhccceeeeecceeccc-c--cCCceeeecC----CCCccceEEEEEeCCccccHHHHHHHH
Q psy3760 221 ---VLET-INSDIIKTYVELRMGIGIIASIAFDSN-R--DKNLRSISAS----HLFGTTISRVIIKQGTYLRSYVYSFIK 289 (306)
Q Consensus 221 ---~~~~-~~~~~~~~~v~~g~gi~~~p~~~~~~~-~--~~~l~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~ 289 (306)
...+ ++...++.++..|.|++++|....... . .+.++.+++. +....+.++++|+++...+++++.|++
T Consensus 177 ~~~~~~~~~~~~~~~~~v~~g~g~ai~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~s~aa~~Fi~ 256 (294)
T 3cvg_A 177 STWYHQYITFPIQALTAAILLREYTITDYGTYLSIPRGLRDQMVIYKKGTNDADDPLLNPAHLLVGARAKNAEMAKEFAK 256 (294)
T ss_dssp CTTEEECCSCHHHHHHHHHHTTCEEEEEHHHHTTSCHHHHTTCEEEEECCSCTTCTTEEEEEEEEBSSCSSHHHHHHHHH
T ss_pred cceeEEecCCchhhhhhhhcCCCeeeeeeeeEEEeccccCCceEEEecCCCCCCcceeeEEEEEEeCCCCCHHHHHHHHH
Confidence 4455 478899999999999999987432221 1 3568888764 445677899999988888999999999
Q ss_pred HHhHHh-hHHHHH
Q psy3760 290 LLSPKL-NRKFIN 301 (306)
Q Consensus 290 ~l~~~~-~~~~~~ 301 (306)
++++.- .+..+.
T Consensus 257 ~l~s~e~gq~i~~ 269 (294)
T 3cvg_A 257 WLVSKEGGQKVIE 269 (294)
T ss_dssp HHHSTTTHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 998764 444443
No 31
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=99.86 E-value=6.5e-24 Score=169.97 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=101.4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-----CCccccCHhHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-----KRIRGLTKPGQAILRSIEIIMQ 75 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-----~~~~~lT~~G~~l~~~a~~il~ 75 (306)
|++++|++|.+++++| ||++||++||+|||++|++|++||+.+|.+||+|++ +++ +||++|+.|+++++.+++
T Consensus 20 ~~~~~l~~f~~v~~~g-s~~~aa~~l~~s~~~~s~~i~~le~~lg~~L~~R~~~~lsg~~~-~lt~~g~~l~~~~~~~~~ 97 (265)
T 1b9m_A 20 ADPRRISLLKHIALSG-SISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGGKGGGGA-VLTRYGQRLIQLYDLLAQ 97 (265)
T ss_dssp ECHHHHHHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEECCCC-----E-EECHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCCeEEecCCCCCCCce-EECHHHHHHHHHHHHHHH
Confidence 5789999999999999 999999999999999999999999999999999997 477 899999999999999999
Q ss_pred HHHHHHHHHHhhccCC----CCcE-EEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCC
Q psy3760 76 EIEGLKKIGKEFSAYD----TGNL-TIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN 130 (306)
Q Consensus 76 ~~~~~~~~~~~~~~~~----~~~l-~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~ 130 (306)
.++.+.+.+....... .+.+ +++...+ ...+++..+..|...+|++.+++...+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s-a~n~L~~~v~~~~~~~p~~~v~l~l~~ 156 (265)
T 1b9m_A 98 IQQKAFDVLSDDDALPLNSLLAAISRFSLQTS-ARNQWFGTITARDHDDVQQHVDVLLAD 156 (265)
T ss_dssp HHHHHHHHHHHCCSSCTTCHHHHHHHHTEEES-SSEEEEEEECCCSSSSCCSEEEEEETT
T ss_pred HHHHHHHHHHhccCCchHHHHHHHhhccCccc-ceeEeccEEEEEEeCCccEEEEEEECC
Confidence 9999998887633111 1233 3333222 334556666777778888888777543
No 32
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=99.85 E-value=6.6e-20 Score=146.16 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=159.9
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCC-----CCceeecccc
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPS-----DKLISIPCYQ 165 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~-----~~~~~~~l~~ 165 (306)
..|.|+|+.+.++. .+++.++..|.++||++++.+...++.+.++.|.+|++|++++..+.... .++...++..
T Consensus 2 ~~G~l~i~gs~t~~-~~l~~~~~~f~~~~P~v~i~v~~~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l~~~~i~~ 80 (264)
T 4ecf_A 2 AGESITAVGSTALQ-PLVEAAGEQYTGEHLGTFINVQGGGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQLVDHRVAV 80 (264)
T ss_dssp CCEEEEEEECTTTH-HHHHHHHHHHHHHSTTEEEEEEEECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGEECCEEEE
T ss_pred CCceEEEEecChHH-HHHHHHHHHHHHHCCCceEEEEeCCCHHHHHHHHcCCCchhhccCCCChhHHhhccCCEEEEEEE
Confidence 35799999998874 79999999999999999999999999999999999999999986442221 4788999999
Q ss_pred ceEEEEecCCCCCCCCCCcChhhhcC----------------C--CeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCH
Q psy3760 166 WEYVIIVPLDHPLLLLNSISLKEISN----------------Y--PLITYDLSFSGRIKLDREFSLQKLTPYIVLETINS 227 (306)
Q Consensus 166 ~~~~~v~~~~~~l~~~~~i~~~dl~~----------------~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (306)
+.++++++++||+. .++.++|.+ . +++....+++.+..+.+.+...+ .....++.++.
T Consensus 81 d~lvvvv~~~~p~~---~lt~~~L~~if~G~i~~W~~l~~~~~~i~~i~r~~gSgtr~~f~~~l~~~~-~~~~~~~~~s~ 156 (264)
T 4ecf_A 81 VGITPIVNKKVGVK---NLSTNQLIKIFTGQITNWKEVGGADQSIVLINRAQGSGTRATFEQFGLANH-RSKTAQEQDSS 156 (264)
T ss_dssp EEEEEEECTTSSCS---EECHHHHHHHHTTSCCBGGGGTSCSCBCEEEEECTTCHHHHHHHHHTSTTC-CCCSCEEESSH
T ss_pred EEEEEEEcCCCccc---ccCHHHHHHHHCCCCcccccCCCCCCeeEEeccCCCCcHHHHHHHHhccCC-CCCcccccCCH
Confidence 99999999999973 466666653 3 47777888888999998886665 33456789999
Q ss_pred HHHHHHHHhcc-ceeeeecceecccccCCceeeecCC------------CCccceEEEEEeCCccccHHHHHHHHHHhHH
Q psy3760 228 DIIKTYVELRM-GIGIIASIAFDSNRDKNLRSISASH------------LFGTTISRVIIKQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 228 ~~~~~~v~~g~-gi~~~p~~~~~~~~~~~l~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 294 (306)
+.++++|.++. ||++++...+. +.++.++++. .+..+++|+++++. .++.++.|++++.+.
T Consensus 157 ~~i~~~V~~~~~aIg~~~~~~~~----~~l~~l~i~~v~pt~~~i~~g~ypl~r~~~~~~~~~--~~~~~~~F~~~~~s~ 230 (264)
T 4ecf_A 157 GMVRSIVATTPGAISYVAFSYVN----KTVQALSLNHVAPTEVNVTTNDWRIWSYEHLYTKGH--PTGLTKAFITYVQSP 230 (264)
T ss_dssp HHHHHHHHHSTTEEEEEEGGGCC----TTSEECEETTBCCCHHHHHTTSSCCEEEEEEEEESS--CCHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCCcEEEEEhHHhh----CCceEEEEccccCCHHHhhcCCCCceeEEEEEEcCC--CcHHHHHHHHHHhCc
Confidence 99999999996 79999988774 3688888762 24567899999764 589999999999875
Q ss_pred h
Q psy3760 295 L 295 (306)
Q Consensus 295 ~ 295 (306)
-
T Consensus 231 ~ 231 (264)
T 4ecf_A 231 A 231 (264)
T ss_dssp H
T ss_pred h
Confidence 4
No 33
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=99.77 E-value=7.2e-17 Score=128.59 Aligned_cols=195 Identities=10% Similarity=0.069 Sum_probs=155.5
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEcccc-----CCCCCceeeccccc
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEIL-----SPSDKLISIPCYQW 166 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~-----~~~~~~~~~~l~~~ 166 (306)
.+.|+|+.+.++. .+++.++..|.+.||++++++...++...++.+.+|++||+++.... ....++...++..+
T Consensus 3 ~~~l~i~gStt~~-~~~~~~~~~F~~~~P~v~i~v~~~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d 81 (265)
T 4exl_A 3 GESITAVGSTALQ-PLVEVAADEFGTIHVGKTVNVQGGGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVA 81 (265)
T ss_dssp CCEEEEEECTTHH-HHHHHHHHHHHHHSTTCEEEEEEECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEE
T ss_pred CceEEEEeeCcHH-HHHHHHHHHHHHHCCCceEEEeeCCcHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEE
Confidence 4789999999875 78999999999999999999999999999999999999999984221 12357889999999
Q ss_pred eEEEEecCCCCCCCCCCcChhhhcC----------------C--CeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHH
Q psy3760 167 EYVIIVPLDHPLLLLNSISLKEISN----------------Y--PLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSD 228 (306)
Q Consensus 167 ~~~~v~~~~~~l~~~~~i~~~dl~~----------------~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (306)
.++++++++||+. .++.++|.+ . +++....+++.+..+.+.+...+. .....+.++..
T Consensus 82 ~lvvvv~~~~~~~---~lt~~~L~~If~G~i~~W~~lg~p~~~I~~v~R~~gSGTr~~f~~~l~~~~~-~~~~~~~~s~~ 157 (265)
T 4exl_A 82 GLALIVNKEVDVD---NLTTEQLRQIFIGEVTNWKEVGGKDLPISVINRAAGSGSRATFDTVIMEGQS-AMQSQEQDSNG 157 (265)
T ss_dssp EEEEEECTTCCCC---EECHHHHHHHHTTSCCBGGGBTSCSCBCEEEEECTTSHHHHHHHHHTTTTCC-CCSCEEECCHH
T ss_pred EEEEEECCCCccc---cCCHHHHHHHHcCCCCcccccCCCCCeeEEEecCCCCcHHHHHHHHHccCCC-CccccccCChH
Confidence 9999999999963 456666643 2 467778888889999998876654 33457889999
Q ss_pred HHHHHHHhc-cceeeeecceecccccCCceeeecCC------------CCccceEEEEEeCCccccHHHHHHHHHHhHHh
Q psy3760 229 IIKTYVELR-MGIGIIASIAFDSNRDKNLRSISASH------------LFGTTISRVIIKQGTYLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 229 ~~~~~v~~g-~gi~~~p~~~~~~~~~~~l~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 295 (306)
.+.++|.++ .||++++...+.. .++.++++. .+..+.+|++++.. .++.++.|++++.+.-
T Consensus 158 ~v~~~V~~~~~aIGy~~~~~~~~----~lk~l~i~gv~pt~~~i~~g~YPl~r~~~~~~~~~--~~~~~~~F~~~~~s~~ 231 (265)
T 4exl_A 158 AVKSIVSKSPGAISYLSLTYIDD----SVKSMKLNGYDLSPENISSNNWPLWSYEHMYTLGQ--PNELAAEFLNFVLSDE 231 (265)
T ss_dssp HHHHHHHHSTTEEEEEEGGGCCT----TSEECEETTBCCCHHHHHTTSSCCEEEEEEEEESS--CCHHHHHHHHHHHSHH
T ss_pred HHHHHHhcCCCeEEEEEHHHhhC----cccEeEECCcCCCHHHhccCCCCCeeeEEEEECCC--chHHHHHHHHHHhCcc
Confidence 999999875 8999999877643 488888764 23456778876653 5899999999998754
Q ss_pred hH
Q psy3760 296 NR 297 (306)
Q Consensus 296 ~~ 297 (306)
.+
T Consensus 232 gq 233 (265)
T 4exl_A 232 TQ 233 (265)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 34
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=99.73 E-value=1e-16 Score=131.43 Aligned_cols=197 Identities=13% Similarity=0.025 Sum_probs=152.2
Q ss_pred cEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCC-----ceeeccccceE
Q psy3760 94 NLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDK-----LISIPCYQWEY 168 (306)
Q Consensus 94 ~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~-----~~~~~l~~~~~ 168 (306)
.|+|+.+.++ ..+++.++..|.+ ||++++++...++...++.+.+|.+|++++..+ ...+. +...++..+.+
T Consensus 3 ~l~i~gs~t~-~~~l~~~~~~f~~-~p~v~i~v~~~gS~~~~~~l~~g~~Di~~~~~~-~~~~e~~~~~l~~~~~~~d~l 79 (321)
T 1ixh_A 3 SLTGAGATFP-APVYAKWADTYQK-ETGNKVNYQGIGSSGGVKQIIANTVDFGASDAP-LSDEKLAQEGLFQFPTVIGGV 79 (321)
T ss_dssp EEEEEECSTT-HHHHHHHHHHHHH-HHCCEEEEEECCHHHHHHHHHTTCSSEEEESSC-CCHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEEEeCcH-HHHHHHHHHHHHh-cCCceEEEecCCCHHHHHHHHcCCCcEEecccC-CChhhHhhCCCEEeeeeeeeE
Confidence 6999999985 6799999999998 999999999999999999999999999999755 33333 58899999999
Q ss_pred EEEecCCCCCCCCCCcC--------------hhh-----------hcCCC--eEeecCCCCcHHHHHHHHHhCCC-----
Q psy3760 169 VIIVPLDHPLLLLNSIS--------------LKE-----------ISNYP--LITYDLSFSGRIKLDREFSLQKL----- 216 (306)
Q Consensus 169 ~~v~~~~~~l~~~~~i~--------------~~d-----------l~~~~--~i~~~~~~~~~~~~~~~~~~~~~----- 216 (306)
+++++++|+...+..++ |+| +.+.| ++....+++.+..+.+.+...+.
T Consensus 80 vvvv~~~~~~~~~~~lt~~~l~~If~g~i~~W~d~~i~~~np~~~l~~~~I~~v~r~~~Sgt~~~f~~~l~~~~~~~~~~ 159 (321)
T 1ixh_A 80 VLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNN 159 (321)
T ss_dssp EEEECCTTCCTTCCEECHHHHHHHHTTCCCBTTCHHHHHHCTTCCCCCCBCEEEEESSCCHHHHHHHHHHHHHCHHHHHH
T ss_pred EEEEeCCCCccccccCCHHHHHHHhcCCCCcCCChhhhhhCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHhcCcchhhc
Confidence 99999999876433444 666 66778 88888888889898988876432
Q ss_pred -------ceeEEEEecCHHHHHHHHHhc-cceeeeecceeccc---------ccCCceeeec------------------
Q psy3760 217 -------TPYIVLETINSDIIKTYVELR-MGIGIIASIAFDSN---------RDKNLRSISA------------------ 261 (306)
Q Consensus 217 -------~~~~~~~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~---------~~~~l~~~~~------------------ 261 (306)
.....+..++.+.+.++|.+| .||++++...+... ..+.++....
T Consensus 160 ~~~g~~~~~~~~~~~~~~~~v~~~V~~~~~~Ig~v~~~~~~~~~l~~~~l~~~~G~~v~p~~~~i~~a~~~~~~~~~~~~ 239 (321)
T 1ixh_A 160 VGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQ 239 (321)
T ss_dssp TCCCSSCCCSSCEEESHHHHHHHHHHHSTTEEEEEEHHHHHTTTCEECEEECTTSCEECCCHHHHHHHTTTCCTTTCSCC
T ss_pred cCcCccccCCcccccCCcHHHHHHHhcCCCeEEEechHHhhhcCCcEEEEEcCCCCEeCCCHHHHHHHHhcCccccccce
Confidence 222247899999999999999 48999998765431 0222211111
Q ss_pred -------CC-CCccceEEEEEeCCcc---ccHHHHHHHHHHhH
Q psy3760 262 -------SH-LFGTTISRVIIKQGTY---LRSYVYSFIKLLSP 293 (306)
Q Consensus 262 -------~~-~~~~~~~~l~~~~~~~---~~~~~~~~~~~l~~ 293 (306)
+. .+..+.+|++++++.. .++.++.|++++.+
T Consensus 240 ~~~~~~~~~~YPi~r~~~~~~~~~~~~~~~~~~~~~Fl~~~~s 282 (321)
T 1ixh_A 240 DLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYK 282 (321)
T ss_dssp CCBSCCSTTCCSBEEEEEEEEESBCSSHHHHHHHHHHHHHHHH
T ss_pred eccCCCCCCCccccceEEEEEECCcCchhhHHHHHHHHHHHHh
Confidence 12 2345678899888754 58899999999987
No 35
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=99.73 E-value=4.6e-16 Score=121.68 Aligned_cols=196 Identities=9% Similarity=0.037 Sum_probs=145.9
Q ss_pred cEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCC-eeEEEEccccC----CCCCc----eeeccc
Q psy3760 94 NLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQ-ADIAIVTEILS----PSDKL----ISIPCY 164 (306)
Q Consensus 94 ~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~-~Di~i~~~~~~----~~~~~----~~~~l~ 164 (306)
+|+|+++.++ ..+++.++..|.++ |++++++...++.++.+.|.+|. +|+++...... ...++ ...++.
T Consensus 1 ~l~i~~~~~~-~~~l~~~~~~F~~~-p~i~v~~~~~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (231)
T 1atg_A 1 ELKVVTATNF-LGTLEQLAGQFAKQ-TGHAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYA 78 (231)
T ss_dssp CEEEEEEGGG-HHHHHHHHHHHHHH-HCCCEEEEEECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEE
T ss_pred CeEEEEEcch-HHHHHHHHHHHHhc-cCCeEEEEECCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEee
Confidence 4899998876 66899999999999 99999999999999999999998 99998843210 02333 478889
Q ss_pred cceEEEEecCCCCCCCCCCcChhhhcCC---CeEeecCC-CCcHHHHHHHHHhCCCcee-----EEEEecCHHHHHHHHH
Q psy3760 165 QWEYVIIVPLDHPLLLLNSISLKEISNY---PLITYDLS-FSGRIKLDREFSLQKLTPY-----IVLETINSDIIKTYVE 235 (306)
Q Consensus 165 ~~~~~~v~~~~~~l~~~~~i~~~dl~~~---~~i~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~ 235 (306)
.++++++++++||+.. +++||.+. +++..++. ...+....+.+...|+.+. .....++...+.+++.
T Consensus 79 ~~~~vlv~~~~~~~~~----~~~dL~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (231)
T 1atg_A 79 IGKLVLWSAKPGLVDN----QGKVLAGNGWRHIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTA 154 (231)
T ss_dssp ECCEEEEESSTTTSCT----TSGGGGSSSCSCEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEESSHHHHHHHHH
T ss_pred eeeEEEEEcCCCCCCc----chhhhccCCCCEEEecCCCCCchhHHHHHHHHHCCCcccccccceEEecCCHHHHHHHHH
Confidence 9999999999998643 78999887 78777665 4566677888888887532 2347889999999999
Q ss_pred hcc-ceeeeecceeccc-ccCCceeeecCCC-CccceEEEEEeCCccccHHHHHHHHHHhHHh
Q psy3760 236 LRM-GIGIIASIAFDSN-RDKNLRSISASHL-FGTTISRVIIKQGTYLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 236 ~g~-gi~~~p~~~~~~~-~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 295 (306)
+|. ++++++...+... .......++++.. .......+...++...++.+++|++++.+.-
T Consensus 155 ~G~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~a~~fi~~l~s~~ 217 (231)
T 1atg_A 155 SGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMKGPK 217 (231)
T ss_dssp TTSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHHHHHHHHHHTTSHH
T ss_pred cCCCCEEEEEHHHhhhccccccCeEEEeCcccCccceEeEEEecCCCChHHHHHHHHHHcCHH
Confidence 995 8999998765432 1111344455442 1223334444577778999999999987653
No 36
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=99.69 E-value=7.7e-16 Score=127.45 Aligned_cols=203 Identities=10% Similarity=-0.008 Sum_probs=153.3
Q ss_pred CCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCC-----CCceeeccc
Q psy3760 90 YDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPS-----DKLISIPCY 164 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~-----~~~~~~~l~ 164 (306)
...+.|+|+.+.+ ...+++.++..|.+.||++++++...++...++.+.+|++||+++..+.... .++...++.
T Consensus 24 ~~~g~l~i~gSst-~~~~l~~~~~~f~~~~p~v~i~v~~~gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l~~~pi~ 102 (350)
T 1pc3_A 24 SSPVTLAETGSTL-LYPLFNLWGPAFHERYPNVTITAQGTGSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGLMNIALA 102 (350)
T ss_dssp SSCEEEEEEECTT-THHHHHHHHHHHHHHSTTEEEECCBCCHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTEEEEEEE
T ss_pred cCCceEEEEEeCc-HHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCCEEeeEE
Confidence 4578999999988 4679999999999999999999999999999999999999999996553322 247899999
Q ss_pred cceEEEEecCCCCCCC--------------CCCcChhh-----------hcCCC--eEeecCCCCcHHHHHHHHHhCCC-
Q psy3760 165 QWEYVIIVPLDHPLLL--------------LNSISLKE-----------ISNYP--LITYDLSFSGRIKLDREFSLQKL- 216 (306)
Q Consensus 165 ~~~~~~v~~~~~~l~~--------------~~~i~~~d-----------l~~~~--~i~~~~~~~~~~~~~~~~~~~~~- 216 (306)
.+.++++++++|+ .. .+..+|+| +.+.| ++....+++.+..+.+.+...+.
T Consensus 103 ~d~lvvvvn~~~~-~~~~~Lt~~ql~~If~g~i~~W~d~~i~~~np~~~l~~~~I~~v~r~~~SGTr~~f~~~l~~~~~~ 181 (350)
T 1pc3_A 103 ISAQQVNYNLPGV-SEHLKLNGKVLAAMYQGTIKTWDDPQIAALNPGVNLPGTAVVPLHRSDGSGDTFLFTQYLSKQDPE 181 (350)
T ss_dssp EEEEEEEECCTTC-CSCCEECHHHHHHHHHTSCCBTTCHHHHHHSTTCCCCCCBCEECEESSCCHHHHHHHHHHHHHCTT
T ss_pred eeeEEEEEeCCcc-cccccCCHHHHHHHhcCccccccchhhhhcCCCCCCCCCcEEEEeCCCCCCHHHHHHHHHHhhCcc
Confidence 9999999999995 32 33456777 44665 78888888888888988865321
Q ss_pred ------------c-ee--EEEEecCHHHHHHHHHhc-cceeeeecceecccccCCceeeec-------------------
Q psy3760 217 ------------T-PY--IVLETINSDIIKTYVELR-MGIGIIASIAFDSNRDKNLRSISA------------------- 261 (306)
Q Consensus 217 ------------~-~~--~~~~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~~~~~l~~~~~------------------- 261 (306)
. |. ..++.++.+.+.++|.++ .||++++...+......++..+++
T Consensus 182 ~w~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~V~~~~~aIgyv~~~~v~~~~~~~l~~~~i~~~~G~~v~pt~~~i~~a~ 261 (350)
T 1pc3_A 182 GWGKSPGFGTTVDFPAVPGALGENGNGGMVTGCAETPGCVAYIGISFLDQASQRGLGEAQLGNSSGNFLLPDAQSIQAAA 261 (350)
T ss_dssp TTTTTTCCSSSCCCCCCTTCCEECHHHHHHHHHHHSTTEEEEEEGGGHHHHHHTTCEECEEECTTSCEECCSHHHHHHHH
T ss_pred cchhccccCccccccccCCccccCCcHHHHHHHhcCCCeEEEechHHhhhhhhcCcceEEEEcCCCCEeCCCHHHHHHHH
Confidence 1 21 137889999999999999 569999987643211122333222
Q ss_pred ---------------------CCCCccceEEEEEeCCcc---ccHHHHHHHHHHhHH
Q psy3760 262 ---------------------SHLFGTTISRVIIKQGTY---LRSYVYSFIKLLSPK 294 (306)
Q Consensus 262 ---------------------~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~l~~~ 294 (306)
...+..+.+|++++++.. .++.++.|++++.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~YPi~r~~~~~~~~~~~~~~~~~~~~~Fl~~~~s~ 318 (350)
T 1pc3_A 262 AGFASKTPANQAISMIDGPAPDGYPIINYEYAIVNNRQKDAATAQTLQAFLHWAITD 318 (350)
T ss_dssp TTTTTCCCTTCCCCCTTCSCTTCCSCEEEEEEEEESBCSSHHHHHHHHHHHHHHTTG
T ss_pred hhccCCcccccccccccCCCCCCCceeeeeeeeeecccCCchhHHHHHHHHHHHHcC
Confidence 112346678888887652 478999999999876
No 37
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=99.64 E-value=1.6e-14 Score=111.67 Aligned_cols=206 Identities=14% Similarity=0.105 Sum_probs=151.9
Q ss_pred CcEEEEecccch-hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCCC-------ceeeccc
Q psy3760 93 GNLTIATTHTQA-RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDK-------LISIPCY 164 (306)
Q Consensus 93 ~~l~I~~~~~~~-~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~-------~~~~~l~ 164 (306)
..|+|++..+.. ..+++.++..|.++| ++++.+...++.++++++.+|.+|++++..+ ..... ....++.
T Consensus 5 ~~L~vaaatS~~~~~ll~~L~~~Fek~~-gv~V~~~~~gSg~ll~qi~~G~aDv~isa~~-~~~~~l~~~g~~~~~~~~a 82 (237)
T 3muq_A 5 EHVRLATTTSTYHSGLLDYLLPQFEKDT-GYKVDVIAAGTGKALKMGENGDVDLVMTHAP-KAEGTFVEKGYGVLPRKLM 82 (237)
T ss_dssp CEEEEEEEHHHHHHTHHHHHHHHHHHHH-CCEEEEEEECHHHHHHHHHTTSSSEEEECCH-HHHHHHHHTTSEEEEEEEE
T ss_pred CEEEEEEECCcchhhHHHHHHHHHHHHh-CceEEEEEcChHHHHHHHhcCCCCEEEecCc-hhHHHHHhcCCccccEEEE
Confidence 479999987664 578999999999999 7999999999999999999999999999644 22222 3567888
Q ss_pred cceEEEEecCCCCCCCCCCcChh----hhc--CCCeEeecCCCCcHHHHHHHHHhCCCceeE--EEEe-cCHHHHHHHHH
Q psy3760 165 QWEYVIIVPLDHPLLLLNSISLK----EIS--NYPLITYDLSFSGRIKLDREFSLQKLTPYI--VLET-INSDIIKTYVE 235 (306)
Q Consensus 165 ~~~~~~v~~~~~~l~~~~~i~~~----dl~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~v~ 235 (306)
.+++++|+|++||+.-+...++. .+. +.|||+..++++.+....++|++.|+.|.. ..++ ..+...+.++.
T Consensus 83 ~N~lVlV~P~~~P~~i~~~~dl~~~l~~Ia~~~~~fisRedgSGTr~~~~~~~~~~gi~p~~~wy~~~g~gm~~~l~~a~ 162 (237)
T 3muq_A 83 YNDFVIVGPKADPAKIKDDESVLDVFKEIANKNATFISRGDDSGTHKKEMGFWAQTKIEPNFGGYRSVGQGMGPTLNMAS 162 (237)
T ss_dssp EEEEEEEECTTCTTCCTTCSSHHHHHHHHHHTTCCEEECCSCCHHHHHHHHHHHHHTCCSCSTTEEECCCCHHHHHHHHH
T ss_pred eCCEEEEEeCCChhhccchhhHHHHHHHHhhcCCcEEEccCCCcHHHHHHHHHHHcCCCCCCCchhhhCcCHHHHHHHHH
Confidence 99999999999997644333443 344 999999999999999999999999998753 2233 46678888888
Q ss_pred hccceeeeecceeccc-ccCCceeeecCCCCccceEEEEE-eCCc---cccHHHHHHHHHHhHHhhHHHH
Q psy3760 236 LRMGIGIIASIAFDSN-RDKNLRSISASHLFGTTISRVII-KQGT---YLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 236 ~g~gi~~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~-~~~~---~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
...++++..+...-.+ ...+|..+--.++....+|.++. .+.+ ......++|++|+.+.=.+..+
T Consensus 163 ~~~~y~l~dr~t~l~~~~~~~l~i~~~gd~~l~n~y~v~~v~p~~~~~~~~~~a~~f~~wl~s~~gQ~~i 232 (237)
T 3muq_A 163 EMQGYTMSDRGTWLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYPTINYQGAKAFSDWLVNPRGQELI 232 (237)
T ss_dssp HTTCBEEEEHHHHHHHGGGCSCEEEECCCGGGEEEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHH
T ss_pred hcCCEEEEechHHhhccccCCeEEEEcCCCceeeeeEEEEECcccCCccCHHHHHHHHHHHcCHHHHHHH
Confidence 8899999886443233 34567765544534333444333 2222 1467899999999765444443
No 38
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=99.61 E-value=5.2e-14 Score=108.61 Aligned_cols=208 Identities=12% Similarity=0.063 Sum_probs=150.8
Q ss_pred CCCcEEEEecccch-hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCC------CCCceeecc
Q psy3760 91 DTGNLTIATTHTQA-RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSP------SDKLISIPC 163 (306)
Q Consensus 91 ~~~~l~I~~~~~~~-~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~------~~~~~~~~l 163 (306)
..|.|+|++..+.. ..+++.++..|.++| ++++.+...++.++++++.+|.+|++++..+... .-.....++
T Consensus 3 ~~g~L~vaaa~S~~~~~ll~~L~~~Fek~~-gv~V~~~~~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~ 81 (236)
T 3lr1_A 3 AEERLKMSTTTSTQDSGLLKVLLPPFEKKN-NVKVDVIAVGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDV 81 (236)
T ss_dssp CSCEEEEEEEHHHHHHCHHHHHHHHHHHHH-TCEEEEEEECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEE
T ss_pred CCcEEEEEEECCccchHHHHHHHHHHHHHh-CCeEEEEEcChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEE
Confidence 46899999998765 478999999999998 9999999999999999999999999999644221 112466789
Q ss_pred ccceEEEEecCCCCCCCCCCcCh----hhh--cCCCeEeecCCCCcHHHHHHHHHhCCCceeE--EEEe-cCHHHHHHHH
Q psy3760 164 YQWEYVIIVPLDHPLLLLNSISL----KEI--SNYPLITYDLSFSGRIKLDREFSLQKLTPYI--VLET-INSDIIKTYV 234 (306)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~~~i~~----~dl--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~v 234 (306)
..+++++++|++||+.-+...++ ..+ .+.|||...++++.+....+.|+..|+.|.- ..++ ..+...+.++
T Consensus 82 ~~n~lVlV~P~~~P~~i~~~~dl~~~l~~IA~a~~~fisRed~SGT~~~~~~l~~~aGi~p~~~wy~~~g~gm~~~l~~a 161 (236)
T 3lr1_A 82 MYNDFVIVGPKNDPAGIAKAKTAAEALKLLATKGATFISRGDKSGTHTKELDLWKSAGVDPKGNWYVEAGQGMGPVITMA 161 (236)
T ss_dssp EECCEEEEECTTCTTCGGGCSSHHHHHHHHHHHTCCEEECCSSSHHHHHHHHHHHHTTCCCCSSSEEECCSCHHHHHHHH
T ss_pred EcCcEEEEEECCChhhccchhhHHHHHHHHhhCCCcEEEccCCcchHHHHHHHHHHcCCCCCCCchhhcCcCHHHHHHHH
Confidence 99999999999999754332233 333 5899999999999999999999999998753 2233 4667888888
Q ss_pred Hhccceeeeecceeccc--ccCCceeeecCCCCccceEEEEE-eCCc---cccHHHHHHHHHHhHHhhHHH
Q psy3760 235 ELRMGIGIIASIAFDSN--RDKNLRSISASHLFGTTISRVII-KQGT---YLRSYVYSFIKLLSPKLNRKF 299 (306)
Q Consensus 235 ~~g~gi~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~l~~-~~~~---~~~~~~~~~~~~l~~~~~~~~ 299 (306)
....++++..+...-.+ ...+|..+--.++....+|.++. .+.+ ......++|++||.+.=.+..
T Consensus 162 ~~~~~y~ltdr~t~l~~~~~~~~l~i~~~~d~~l~n~y~~~~v~p~~~~~~~~~~a~~f~~~l~s~~~q~~ 232 (236)
T 3lr1_A 162 TERRAYTLTDRGTYNAFKGAKTDLVILFQGEKGLFNPYGIMAVNPKKFPHVKYDLAMKLIDYVTGPEGLKI 232 (236)
T ss_dssp HHHTCEEEEEHHHHHHHBTTTBCCEEEEEC---CCEEEEEEEECTTTCTTSCHHHHHHHHHHHTSHHHHHH
T ss_pred HHcCCEEEecchhhhhcccCCCCeEEEEcCCcceeeceeEEEECcccCCccCHHHHHHHHHHhcCHHHHHH
Confidence 88899998887333222 24456665444433333443332 2221 246789999999976544433
No 39
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=99.44 E-value=1.6e-12 Score=100.32 Aligned_cols=207 Identities=12% Similarity=0.053 Sum_probs=150.8
Q ss_pred CCCcEEEEecccch-hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCCC-------Cceeec
Q psy3760 91 DTGNLTIATTHTQA-RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSD-------KLISIP 162 (306)
Q Consensus 91 ~~~~l~I~~~~~~~-~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~-------~~~~~~ 162 (306)
..+.|+|++..++. ..+++.+...|.+.+ ++++.+...++..+++++.+|.+|+.++..+ .... .....+
T Consensus 3 ~~~~L~vaaaaS~~~s~ll~eL~~~Fek~~-gv~V~~~~~gSg~ll~qi~~G~aDVfisa~~-~~~~~l~~~G~~~~~~~ 80 (242)
T 3kn3_A 3 AAAELRMATTTSTDNTGLLDVLAPAYKKDT-GVDLKWVAVGTGNALKLGENCDVDVVFVHAP-KVELEYVEKGFGIDRTP 80 (242)
T ss_dssp -CCEEEEEEEHHHHHHTHHHHHHHHHHHHH-SCEEEEEEECHHHHHHHHHTTCCSEEEECCH-HHHHHHHHHTSEEEEEE
T ss_pred CCceEEEEEECCcccchHHHHHHHHHHHHh-CCeEEEEEcCcHHHHHHHhcCCCCEEEecCh-HhHHHHHhcCCCccceE
Confidence 35789999998765 568999999999998 7999999999999999999999999999643 2212 135678
Q ss_pred cccceEEEEecCCCCCCCCCCcChhhh------cCCCeEeecCCCCcHHHHHHHHHhCCCc-eeE---EEEe-cCHHHHH
Q psy3760 163 CYQWEYVIIVPLDHPLLLLNSISLKEI------SNYPLITYDLSFSGRIKLDREFSLQKLT-PYI---VLET-INSDIIK 231 (306)
Q Consensus 163 l~~~~~~~v~~~~~~l~~~~~i~~~dl------~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~-~~~~~~~ 231 (306)
+...++++|+|++||..-. ..++.+. .+.|||+..++++.+....+.++..|+. |.. ..++ ..+...+
T Consensus 81 ~a~N~LVLV~P~~~Pa~i~-~~dl~~~~~~IA~a~~~FvsR~d~SGT~~~e~~lw~~~gi~~p~~~~wy~~~g~gm~~~l 159 (242)
T 3kn3_A 81 VMYNDFVIIGNPSFKQKFT-GMSVAEAFKLIEKEQVKFVSRGDKSGTHSKEREVWKEALGKIPEKESWYIEAGQGMLATI 159 (242)
T ss_dssp EECSCEEEEECTHHHHHHT-TCCHHHHHHHHHHHTCCEEECCSSCHHHHHHHHHHHHHHSSCCTTCTTEEECCSCHHHHH
T ss_pred EEcceEEEEEeCCCccccc-hhhHHHHHHHHHhcCCcEEECCCCccHHHHHHHHHHHcCCCCCCCCCchhhcCcCHHHHH
Confidence 8899999999999984333 3344332 5899999999999999999999999998 742 3333 4667888
Q ss_pred HHHHhccceeeeecceeccc-----ccCCceeeecCCCCccceEEEE-EeCCc---cccHHHHHHHHHHhHHhhHHHH
Q psy3760 232 TYVELRMGIGIIASIAFDSN-----RDKNLRSISASHLFGTTISRVI-IKQGT---YLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 232 ~~v~~g~gi~~~p~~~~~~~-----~~~~l~~~~~~~~~~~~~~~l~-~~~~~---~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
.+...-.++++..+...-.+ ...+|..+--.++....+|.++ ..+.+ ......+.|++||.+.=.+..+
T Consensus 160 ~~a~~~~~Y~l~dr~t~l~~~~~~~~~~~l~i~~~gd~~l~n~y~~~~v~p~~~~~~~~~~a~~f~~~l~s~~~q~~i 237 (242)
T 3kn3_A 160 NIAEEQKGLTLTDRGTFIKYESNHKGKPPMVIVLEGDNTLKNFYSIMAVNPKRCEKADYKGAKQFIDWIVSEKMQAEI 237 (242)
T ss_dssp HHHHHTTCEEEEEHHHHHHHHHHSCSSCSCEEEECCCGGGCCEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHcCCEEEeeehhhhhcchhhcCCCCeEEEEcCCcceEeeeEEEEECcccCCccCHHHHHHHHHHHcCHHHHHHH
Confidence 88888899999887543222 2345776654443333344333 23222 3567899999999765444443
No 40
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.23 E-value=2.1e-10 Score=90.89 Aligned_cols=189 Identities=12% Similarity=0.076 Sum_probs=129.6
Q ss_pred CCcEEEEecccchh------------hhhHHHHHHHHHhC--CCcEEEEEeCChhHHHHHHHcCCeeEEEEcccc--CCC
Q psy3760 92 TGNLTIATTHTQAR------------YALPKIIKEFTIQF--PKVKLSLLQGNPKQITEMIRNDQADIAIVTEIL--SPS 155 (306)
Q Consensus 92 ~~~l~I~~~~~~~~------------~~l~~~l~~~~~~~--p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~--~~~ 155 (306)
.++|+||+...... .+...++..+.++. |++++++...+..++.+.|.+|++|+++..... ...
T Consensus 37 ~~~l~vg~~~~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~ 116 (259)
T 2v25_A 37 KGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERK 116 (259)
T ss_dssp HTCEEEEECSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTSEEEEECCTTTHHHHHHTTSCSEECSSCBCCHHHH
T ss_pred CCeEEEEECCCCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcceEEEEcCHHHHHHHHhCCCCCEEEecCccCHHHH
Confidence 36799998654322 34467888888888 999999999888999999999999999853211 112
Q ss_pred CCceee-ccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHH
Q psy3760 156 DKLISI-PCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYV 234 (306)
Q Consensus 156 ~~~~~~-~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (306)
..+.+. ++....+++++++++++ -+++||.+.++.. ..+......+...+...|+.+++ ..+++...+..++
T Consensus 117 ~~~~~~~p~~~~~~~~~~~~~~~i-----~~~~dL~g~~i~~-~~g~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l 189 (259)
T 2v25_A 117 RIYNFSEPYYQDAIGLLVLKEKKY-----KSLADMKGANIGV-AQAATTKKAIGEAAKKIGIDVKF-SEFPDYPSIKAAL 189 (259)
T ss_dssp TTEEECSCSEEEEEEEEEEGGGCC-----CSGGGCTTCEEEE-ETTCSHHHHHHHHHHHTTCCCEE-EEESSHHHHHHHH
T ss_pred hcCcccccceeCceEEEEeCCCCC-----CCHHHhCCCEEEE-ecCCchHHHHHHHHHhcCCceeE-EEeCCHHHHHHHH
Confidence 345554 78889999999999875 3789999998655 45666677778888888886654 4788999999999
Q ss_pred Hhccc-eeeeecceeccc-c-cCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhH
Q psy3760 235 ELRMG-IGIIASIAFDSN-R-DKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSP 293 (306)
Q Consensus 235 ~~g~g-i~~~p~~~~~~~-~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 293 (306)
.+|.. .++.+...+... . .+. . .........++++.+++. ......+-+.+.+
T Consensus 190 ~~g~vDa~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~k~~--~~l~~~~~~~l~~ 245 (259)
T 2v25_A 190 DAKRVDAFSVDKSILLGYVDDKSE--I--LPDSFEPQSYGIVTKKDD--PAFAKYVDDFVKE 245 (259)
T ss_dssp HTTSSSEEEEEHHHHTTTCCTTEE--E--CSCCCSEEEECCEEETTC--HHHHHHHHHHHHH
T ss_pred HcCCCcEEEecHHHHHHHHHhCCC--c--cccccccceeEEEEcCCC--HHHHHHHHHHHHH
Confidence 99944 444444444333 2 222 1 222233457778888774 3334444444433
No 41
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=99.20 E-value=5.2e-10 Score=91.28 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=130.3
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCCh-hHHHHHHHcCCeeEEEEccccC---CCCCce-----eec
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP-KQITEMIRNDQADIAIVTEILS---PSDKLI-----SIP 162 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~-~~~~~~l~~~~~Di~i~~~~~~---~~~~~~-----~~~ 162 (306)
.++||||+.+.....+++.....|.+.+|++++++...++ .++.+.|.+|++|++++..... ...+.. ..+
T Consensus 2 ~~~lrig~~~~~~~~~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (308)
T 2x26_A 2 PEALRIGYQKGSIGMVLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEP 81 (308)
T ss_dssp CSEEEEEECTTCHHHHHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEEC
T ss_pred CeEEEEEccCCchHHHHHHhcChHhHhcCCCceEEEECCCcHHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEec
Confidence 4689999998876677787778889999999999988765 7899999999999999742211 011222 222
Q ss_pred cccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCcee-EEEEecCHHHHHHHHHhc-cce
Q psy3760 163 CYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY-IVLETINSDIIKTYVELR-MGI 240 (306)
Q Consensus 163 l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~g-~gi 240 (306)
......++++++++++ -+++||.+.++.. ..+......+..++...|+.+. +.+...+...+..++.+| ...
T Consensus 82 ~~~~~~~lv~~~~~~i-----~s~~dL~Gk~i~~-~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~vDa 155 (308)
T 2x26_A 82 PKPKAEVILVAENSPI-----KTVADLKGHKVAF-QKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDA 155 (308)
T ss_dssp CCGGGEEEEEETTCSC-----CSGGGGTTSEEEE-CTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTSSSE
T ss_pred CCCCceEEEEeCCCCC-----CCHHHcCCCEEee-eCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCCCCE
Confidence 2345788999998864 3789999998777 4555556677788999998764 334445677788888888 334
Q ss_pred eeeecceeccc-ccCCceeeecCCCC-ccceEEEEEeCC-ccccHHHHHHHHHHhHH
Q psy3760 241 GIIASIAFDSN-RDKNLRSISASHLF-GTTISRVIIKQG-TYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 241 ~~~p~~~~~~~-~~~~l~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~ 294 (306)
++++....... ..++++.+...... ....++++.++- ...+..++.|.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a 212 (308)
T 2x26_A 156 WAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEA 212 (308)
T ss_dssp EEEETTHHHHHHHHSSEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHH
T ss_pred EEecchhHHHHHhcCCcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHH
Confidence 55555444333 33556665433222 233433333221 22356788888877664
No 42
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=99.18 E-value=6.6e-11 Score=82.14 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=69.4
Q ss_pred CchhhHHHHHHHHH-hcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVR-QNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEG 79 (306)
Q Consensus 1 m~~~~l~~f~~v~~-~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~ 79 (306)
++..++++|..+.+ .. |++.+|+.+++|+|++|++|+.||+ .|..++.|.++++ .+|..|..+.+.+..+++.++.
T Consensus 30 ~~~~~~~il~~L~~~~~-s~~ela~~l~is~stvsr~l~~Le~-~Glv~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~ 106 (119)
T 2lkp_A 30 ATPSRLMILTQLRNGPL-PVTDLAEAIGMEQSAVSHQLRVLRN-LGLVVGDRAGRSI-VYSLYDTHVAQLLDEAIYHSEH 106 (119)
T ss_dssp CCHHHHHHHHHHHHCCC-CHHHHHHHHSSCHHHHHHHHHHHHH-HCSEEEEEETTEE-EEEESCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCC-CHHHHHHHHCcCHHHHHHHHHHHHH-CCCEEEEecCCEE-EEEEchHHHHHHHHHHHHHHhh
Confidence 46778999999998 77 9999999999999999999999999 9999999999998 6999999999998888887765
No 43
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=99.17 E-value=5e-09 Score=84.11 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=141.6
Q ss_pred CCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC---CCCCceeeccccc
Q psy3760 90 YDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS---PSDKLISIPCYQW 166 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~---~~~~~~~~~l~~~ 166 (306)
...++|+|..+.++ ..++..+...|.+.||++++++...++...++++.+|.+|++....+.. ....+...++..+
T Consensus 34 ~~~~~i~i~GSss~-~p~~~~~a~~f~~~~p~v~v~~~~~GSg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d 112 (279)
T 4gd5_A 34 KSTNSVSISGSTSV-GPVMEAEAEAFKTKKPDVSIEINQIGSSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYD 112 (279)
T ss_dssp ---CEEEEEECTTT-HHHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEE
T ss_pred cCCCeEEEEEeCcH-HHHHHHHHHHHHHHCCCceEEEeeCCcHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEee
Confidence 34578999988775 5688899999999999999999999999999999999999999864422 1345778889999
Q ss_pred eEEEEecCCCCCCC-----------CCCcChhhhcC--CC--eEeecCCCCcHHHHHHHHHhCCCce-eEEEEecCHHHH
Q psy3760 167 EYVIIVPLDHPLLL-----------LNSISLKEISN--YP--LITYDLSFSGRIKLDREFSLQKLTP-YIVLETINSDII 230 (306)
Q Consensus 167 ~~~~v~~~~~~l~~-----------~~~i~~~dl~~--~~--~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 230 (306)
.+++++++++|... .+..+|.|+.. .+ .+..+.+.+.+..+.+.+...+... .......+...+
T Consensus 113 ~~~vivn~~n~~~~lt~~~l~~i~~g~i~~W~~l~~~~~~i~~~~r~~~sgt~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 4gd5_A 113 GIALITHKNNPVKDLTLVQIKDIYTGKITNWKELGGNDAPIVVVSREDGSGTRDAFQEIVGFKAEELTVNSQISDGSGNI 192 (279)
T ss_dssp EEEEEEETTCSCCEECHHHHHHHHTTSCCBGGGGTSCSSBCEEEEECTTCHHHHHHHHHHTCCGGGSCTTCEEESSHHHH
T ss_pred ceeeeeccCCccccccHHHHHHHhcccccchhhcCCCccceeEEeCCCCchHHHHHHHHHhccCcccCccccccCCcccc
Confidence 99999999998543 22334555532 23 4444556667777777764333221 123345677778
Q ss_pred HHHHHhc-cceeeeecceecccccCCceeeecCC------------CCccceEEEEEeCCccccHHHHHHHHHHhHHhhH
Q psy3760 231 KTYVELR-MGIGIIASIAFDSNRDKNLRSISASH------------LFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNR 297 (306)
Q Consensus 231 ~~~v~~g-~gi~~~p~~~~~~~~~~~l~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (306)
...|..+ .+++++...... ..+..++++. .+..++++++++... .++.+++|++++.+.-.+
T Consensus 193 ~~~V~~~~~aiGy~~~~~~~----~~~~~~~v~gv~pt~~~i~~g~YPl~rp~~~v~~~~~-~~~~ak~F~~f~~S~egQ 267 (279)
T 4gd5_A 193 KSLVQGNENAIGYISFSYVD----DSVSAVKVDGVEATPENVLNKSYKVSRPFLAVYKEEN-LTESGKSFIDFILSEEGQ 267 (279)
T ss_dssp HHHHHHCTTEEEEEEGGGCC----TTEEECEETTBCCCHHHHHTTCSCCEEEEEEEECTTT-CCHHHHHHHHHHHSHHHH
T ss_pred eeEEeecCccceecchhhhh----ccccEeeecCccCCHHHhhcCCCCcEEEEEEEEcCCC-CCHHHHHHHHHHcCHHHH
Confidence 8888876 678887654432 3455444432 123456777776544 578999999999865444
Q ss_pred HHHHh
Q psy3760 298 KFINK 302 (306)
Q Consensus 298 ~~~~~ 302 (306)
..+++
T Consensus 268 ~ii~~ 272 (279)
T 4gd5_A 268 DIVAK 272 (279)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 44
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=99.05 E-value=6.9e-09 Score=84.79 Aligned_cols=166 Identities=9% Similarity=0.078 Sum_probs=115.1
Q ss_pred CCcEEEEecccchhh-hhHHHHHHHHHh-CCCcEEEEEe-CChhHHHHHHHcCCeeEEEEcccc------------C---
Q psy3760 92 TGNLTIATTHTQARY-ALPKIIKEFTIQ-FPKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEIL------------S--- 153 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~-~l~~~l~~~~~~-~p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~------------~--- 153 (306)
.+.|+|++....+.. .++..+.++..+ +|++++++.. .+.....+.|.+|++|++++.... .
T Consensus 18 ~~~i~i~~~~~~g~~~~~~~~la~~~~~~~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
T 1us5_A 18 QEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGK 97 (314)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTC
T ss_pred CceEEEEeCCCCchhHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCC
Confidence 468999998654433 477888887775 8999999985 567789999999999999975211 0
Q ss_pred CCCCceee-ccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEE--EEecCHHHH
Q psy3760 154 PSDKLISI-PCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIV--LETINSDII 230 (306)
Q Consensus 154 ~~~~~~~~-~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 230 (306)
...++... .+..+++++++++++|+ .+++||.+.++.....+...+..+..+++..|+.++.+ ....+...+
T Consensus 98 ~~~~~~~v~~~~~~~~~lvv~~~~~i-----~sl~dL~g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~ 172 (314)
T 1us5_A 98 PVKTIRALAALYPEVVHVVARKDAGI-----RTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQG 172 (314)
T ss_dssp CCTTEEEEEEEEEEEEEEEEETTSSC-----SSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHH
T ss_pred CccchhehhhcCcceEEEEEECCCCC-----CcHHHhCCCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHH
Confidence 12456554 67788999999999874 38999999988876666666667778889999876522 233355566
Q ss_pred HHHHHhc-cceeee----ecceeccc-ccCCceeeecC
Q psy3760 231 KTYVELR-MGIGII----ASIAFDSN-RDKNLRSISAS 262 (306)
Q Consensus 231 ~~~v~~g-~gi~~~----p~~~~~~~-~~~~l~~~~~~ 262 (306)
...+.+| ...++. |...+... ..++++.+++.
T Consensus 173 ~~al~~G~vda~~~~~~~p~~~~~~~~~~g~l~~l~v~ 210 (314)
T 1us5_A 173 IQLMQDKRADALFYTVGLGASAIQQLALTTPIALVAVD 210 (314)
T ss_dssp HHHHHTTSCSEEEEEECTTCHHHHHHHHHSCEEECCCC
T ss_pred HHHHHcCCccEEEEccCCCcHHHHHHHhcCCeEEEeCC
Confidence 6666766 344442 33233332 45667666553
No 45
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=99.02 E-value=9.8e-08 Score=74.57 Aligned_cols=203 Identities=14% Similarity=0.111 Sum_probs=136.5
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCC-eeEEEEccccC----CCCCc----eeec
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQ-ADIAIVTEILS----PSDKL----ISIP 162 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~-~Di~i~~~~~~----~~~~~----~~~~ 162 (306)
.++|+|.+..++ ...+..++..|.++ |++++++...++.++..++.+|. +|+.+...... ...++ ...+
T Consensus 6 a~~l~v~~a~s~-~~~~~~l~~~Fe~~-~gi~V~~~~~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~ 83 (237)
T 3r26_A 6 EGKITVFAAASL-TNAMQDIATQFKKE-KGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQT 83 (237)
T ss_dssp -CEEEEEEEGGG-HHHHHHHHHHHHHH-HCCEEEEEEECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEE
T ss_pred CCcEEEEEccch-HHHHHHHHHHHHhc-cCCeEEEEECCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceee
Confidence 468999998775 45678899999886 99999999999999999999987 99999853210 01222 2467
Q ss_pred cccceEEEEecCCCCCCC---CCCcChhhhcC-CCeEeecCCC-CcHHHHHHHHHhCCC----ceeEEEEecCHHHHHHH
Q psy3760 163 CYQWEYVIIVPLDHPLLL---LNSISLKEISN-YPLITYDLSF-SGRIKLDREFSLQKL----TPYIVLETINSDIIKTY 233 (306)
Q Consensus 163 l~~~~~~~v~~~~~~l~~---~~~i~~~dl~~-~~~i~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 233 (306)
+....++++++++++... ...-+|.++.. ..+...++.. .......+.++..|+ .++.+ ...+...+.++
T Consensus 84 ~~~~~lvl~~~~~~~~~~~~i~~~~~l~~l~~~~~iai~~p~~~p~G~~a~~~l~~~g~~~~l~~~~~-~~~~~~~~~~~ 162 (237)
T 3r26_A 84 LLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLA-PAEDVRGALAL 162 (237)
T ss_dssp EEEECEEEEEESSCCCCCCCCSTTCCHHHHHTTCCEEEECTTTCHHHHHHHHHHHHTTCHHHHGGGEE-EESSHHHHHHH
T ss_pred eEcceEEEEEeCCCCcccccccchHhHHHhcCCCeEEEeCCCCCChHHHHHHHHHHcCCHHHhhhcEE-ecCCHHHHHHH
Confidence 888899999999986432 12235777653 5666666653 344455677777776 45554 66788899999
Q ss_pred HHhc-cceeeeecceecccccCCceee-ecCCC-CccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHH
Q psy3760 234 VELR-MGIGIIASIAFDSNRDKNLRSI-SASHL-FGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 234 v~~g-~gi~~~p~~~~~~~~~~~l~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
+..| ..++++....+.. .+++..+ .++.. .....+.+...++... +..++|++++.+.-.+...
T Consensus 163 v~~Ge~d~gi~~~s~a~~--~~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi~fl~S~eaq~i~ 229 (237)
T 3r26_A 163 VERNEAPLGIVYGSDAVA--SKGVKVVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFYDYLKGPQAAEIF 229 (237)
T ss_dssp HHTTSSSEEEEEHHHHHH--CSSEEEEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHHHHHTSHHHHHHH
T ss_pred HHcCCCCEEEEEeccccc--CCCCeEEEECCcccCCeeeeeEEEEcCCCC-HHHHHHHHHHcCHHHHHHH
Confidence 9988 5566665543322 3345443 44432 2333445555566654 7899999999765444333
No 46
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=98.95 E-value=2.6e-08 Score=76.94 Aligned_cols=197 Identities=9% Similarity=0.019 Sum_probs=122.7
Q ss_pred CCcEEEEecccchh----------hhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccc--cCCCCCce
Q psy3760 92 TGNLTIATTHTQAR----------YALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEI--LSPSDKLI 159 (306)
Q Consensus 92 ~~~l~I~~~~~~~~----------~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~--~~~~~~~~ 159 (306)
.+.|+||+...... .+...++..+.++. ++++++...+..++.+.+.+|++|+++.... ......+.
T Consensus 2 ~~~l~v~~~~~~~P~~~~~~g~~~G~~~dl~~~~~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~ 80 (226)
T 1wdn_A 2 DKKLVVATDTAFVPFEFKQGDLYVGFDVDLWAAIAKEL-KLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAID 80 (226)
T ss_dssp --CEEEEEESSBTTTBEEETTEEESHHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHTTSSSEEEEEEECCHHHHTTSE
T ss_pred CceEEEEECCCCCCeeEecCCcEEEeeHHHHHHHHHHh-CCEEEEEECCHHHHHHHHhCCCCCEEEEcCcCCHHHhCccc
Confidence 36799999743333 46688888888776 7888888888999999999999999985311 11123344
Q ss_pred e-eccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhcc
Q psy3760 160 S-IPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRM 238 (306)
Q Consensus 160 ~-~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~ 238 (306)
+ .++.....+++++++++ ...+++||.+.++.... +..... ++.... .......+++...+..++.+|.
T Consensus 81 ~~~p~~~~~~~~~~~~~~~----~i~~~~dL~g~~i~~~~-g~~~~~----~l~~~~-~~~~~~~~~~~~~~~~~l~~g~ 150 (226)
T 1wdn_A 81 FSDGYYKSGLLVMVKANNN----DVKSVKDLDGKVVAVKS-GTGSVD----YAKANI-KTKDLRQFPNIDNAYMELGTNR 150 (226)
T ss_dssp ECSCCEEEEEEEEEETTCC----SCSSSTTTTTCEEEEET-TSHHHH----HHHHHC-CCSEEEEESSHHHHHHHHHTTS
T ss_pred cccchhcCceEEEEeCCCC----CCCCHHHhCCCEEEEEc-CCcHHH----HHHHhC-CCceEEEeCCHHHHHHHHHcCC
Confidence 3 47888999999999986 23478999998866643 333322 333321 1223457789999999999995
Q ss_pred ceeeee-cceeccc-cc---CCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhh
Q psy3760 239 GIGIIA-SIAFDSN-RD---KNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 239 gi~~~p-~~~~~~~-~~---~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (306)
.=+++. ....... .. ..+..++. ......++++++++. ......|-+.+.+.-+....+++
T Consensus 151 vDa~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~~--~~l~~~~~~~l~~l~~~g~~~~i 216 (226)
T 1wdn_A 151 ADAVLHDTPNILYFIKTAGNGQFKAVGD--SLEAQQYGIAFPKGS--DELRDKVNGALKTLRENGTYNEI 216 (226)
T ss_dssp CSEEEEEHHHHHHHHHTTTTTTEEEEEE--EEEEEEEEEEECTTC--HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cCEEEeCcHHHHHHHHhCCCCceEEecC--CcccCceEEEEeCCC--HHHHHHHHHHHHHHHhCChHHHH
Confidence 544444 3333322 22 23444432 223457788888773 34444444444444333344444
No 47
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=98.92 E-value=3.8e-07 Score=71.82 Aligned_cols=204 Identities=10% Similarity=0.072 Sum_probs=137.2
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCC-eeEEEEccccC----CCCCc----eee
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQ-ADIAIVTEILS----PSDKL----ISI 161 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~-~Di~i~~~~~~----~~~~~----~~~ 161 (306)
..++|+|.+..++ ...+..++..|.+++ ++++++...++.++..++.+|. +|+.+...... ...++ ...
T Consensus 21 aa~~L~V~~a~s~-~~~~~~l~~~Fe~~~-gi~V~~~~~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~ 98 (253)
T 3gzg_A 21 MTAPVTVFAAASL-KESMDEAATAYEKAT-GTPVRVSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRH 98 (253)
T ss_dssp -CCCEEEEEEGGG-HHHHHHHHHHHHHHH-SCCEEEEEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEE
T ss_pred cCCCEEEEEecCh-HHHHHHHHHHHHHHh-CCeEEEEECChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcce
Confidence 3567999998775 446788999999998 8999999999999999999986 99999853210 11222 346
Q ss_pred ccccceEEEEecCCCCCCCCCC--cChhhhcC--CCeEeecCCC-CcHHHHHHHHHhCCC----ceeEEEEecCHHHHHH
Q psy3760 162 PCYQWEYVIIVPLDHPLLLLNS--ISLKEISN--YPLITYDLSF-SGRIKLDREFSLQKL----TPYIVLETINSDIIKT 232 (306)
Q Consensus 162 ~l~~~~~~~v~~~~~~l~~~~~--i~~~dl~~--~~~i~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 232 (306)
.+....+++++++++|...... -+|.++.. ..++..++.. .......++++..|+ .++. ...++...+..
T Consensus 99 ~~a~~~lvl~~~~~~~~~~~~i~~~dl~~l~~~~~~iai~dP~~~p~G~~a~~~l~~~g~~~~l~~~~-v~~~~~~~~~~ 177 (253)
T 3gzg_A 99 NLLGNTLVLVAPASSKLRVDPRAPGAIAKALGENGRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRL-AESESVRAALM 177 (253)
T ss_dssp EEEEECEEEEEETTCCCCCCTTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSE-EEESSHHHHHH
T ss_pred eEEeeEEEEEEECCCCcccCCCCHHHHHHhhcCCCEEEEeCCCCCchHHHHHHHHHHcCcHHHHhhce-eecCCHHHHHH
Confidence 7788899999999987430111 23666533 5677766643 344555677777776 3555 45788889999
Q ss_pred HHHhc-cceeeeecceecccccCCceee-ecCCC-CccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHH
Q psy3760 233 YVELR-MGIGIIASIAFDSNRDKNLRSI-SASHL-FGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 233 ~v~~g-~gi~~~p~~~~~~~~~~~l~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
++..| ..++++....+.. .+++..+ .++.. .....+.+...++. ..+..++|+++|.+.-.+...
T Consensus 178 ~v~~Gead~giv~~s~a~~--~~~v~~v~~~P~~~~~~i~~~~ai~k~~-~~~~A~~Fi~fl~S~eaq~i~ 245 (253)
T 3gzg_A 178 LVSRGEAPLGIVYGSDARA--DAKVRVVATFPDDSHDAIVYPVAALKNS-NNPATAAFVSWLGSKPAKAIF 245 (253)
T ss_dssp HHHTTSSSEEEEEHHHHHH--CTTEEEEEECCGGGSCCEEEEEEECTTC-CCTTHHHHHHHTTSHHHHHHH
T ss_pred HHHcCCCCEEEEEhhcccc--CCCceEEEECCcccCceeEEEEEEECCC-ChHHHHHHHHHHcCHHHHHHH
Confidence 99988 5566666544332 3445544 34432 23345555555665 578999999999765444433
No 48
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.83 E-value=3.3e-08 Score=76.49 Aligned_cols=189 Identities=10% Similarity=0.080 Sum_probs=119.0
Q ss_pred CCcEEEEecccchh---------hhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccC--CCCCce
Q psy3760 92 TGNLTIATTHTQAR---------YALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILS--PSDKLI 159 (306)
Q Consensus 92 ~~~l~I~~~~~~~~---------~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~~ 159 (306)
.++|+||+.+..+. .+...++..+.++. ++++++... +...+++.|.+|++|+++...... ....+.
T Consensus 2 ~~~l~v~~~~~~P~~~~~~g~~~G~~~dl~~~~~~~~-g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~ 80 (228)
T 2pyy_A 2 QQPLLVATRVIPPFVLSNKGELSGFSIDLWRSIATQI-GIESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQNFD 80 (228)
T ss_dssp --CEEEEECCBTTTBBCC---CBSHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHHHHHSE
T ss_pred CceEEEEecCCCCeEEecCCceEEEeHHHHHHHHHHh-CCcEEEEEcCCHHHHHHHHHCCCcCEEEeccccCHHHHccce
Confidence 36799999764322 23445777777775 889999988 678899999999999997531111 112233
Q ss_pred -eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhcc
Q psy3760 160 -SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRM 238 (306)
Q Consensus 160 -~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~ 238 (306)
+.++.....++++++++|... ...+++||.+.++..... .. ...++...+. ....+++...+..++.+|.
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~-~~~~~~dL~g~~i~~~~g-~~----~~~~l~~~~~---~~~~~~~~~~~~~~l~~g~ 151 (228)
T 2pyy_A 81 FSLPIFASGLQIMVRNLESGTG-DIRSIDDLPGKVVATTAG-ST----AATYLREHHI---SVLEVPKIEEAYKALQTKK 151 (228)
T ss_dssp ECSCSEEEEEEEEEEC-----C-CCCSGGGCTTCEEEEETT-SH----HHHHHHHTTC---EEEEESSHHHHHHHHHTTS
T ss_pred ecccchhcceEEEEECCccccC-CcCCHHHcCCCeEEEEcC-cH----HHHHHHHcCC---ceEecCCHHHHHHHHHcCC
Confidence 347888899999999986532 245899999988776543 22 3445555554 2456789999999999994
Q ss_pred c-eeeeecceeccc-cc---CCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHh
Q psy3760 239 G-IGIIASIAFDSN-RD---KNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLS 292 (306)
Q Consensus 239 g-i~~~p~~~~~~~-~~---~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 292 (306)
. ..+.+....... .. ..+...+.. ....+++++++++....+.+.++++.++
T Consensus 152 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~l~ 208 (228)
T 2pyy_A 152 ADAVVFDAPVLLFYAANEGKGKVEIVGSI--LREESYGIILPNNSPYRKPINQALLNLK 208 (228)
T ss_dssp SSEEEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEECCEECTTCTTHHHHHHHHHHHH
T ss_pred CCEEEecHHHHHHHHHhCCCCcEEEeccc--ccceeEEEEEeCChHHHHHHHHHHHHHH
Confidence 4 666666544332 22 234444322 2345778888877655555555555554
No 49
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=98.82 E-value=4e-09 Score=70.40 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=62.7
Q ss_pred CchhhHHHHHHHHHhcCCHHH---H---HHHhCCCchHHHHHHHHHHHH-cCceeEEecCCCccccCHhHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTE---A---AKALYTSQPGVSKAIIELEEE-LSIDIFIRHGKRIRGLTKPGQAILRSIEII 73 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~---a---A~~l~isq~~~s~~i~~LE~~-lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~i 73 (306)
++..++.++..+.+.+ .++. + |+.+++|++++|+.|++||+. |-.+......+.+ .||+.|+.+++.+.++
T Consensus 6 lt~~q~~iL~~l~~~~-~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~-~LT~~G~~~~~~~~~~ 83 (99)
T 1tbx_A 6 FFYPEAIVLAYLYDNE-GIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRL-YLTEKGKLFAISLKTA 83 (99)
T ss_dssp SBCHHHHHHHHHTTCT-TCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEE-EECHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-CcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEE-EECHHHHHHHHHHHHH
Confidence 3567889999999877 7666 6 999999999999999999995 3222222234555 8999999999999999
Q ss_pred HHHHHHHHH
Q psy3760 74 MQEIEGLKK 82 (306)
Q Consensus 74 l~~~~~~~~ 82 (306)
++.+.+-..
T Consensus 84 ~~~~~~~~~ 92 (99)
T 1tbx_A 84 IETYKQIKK 92 (99)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888776443
No 50
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=98.81 E-value=1.1e-07 Score=75.82 Aligned_cols=200 Identities=11% Similarity=0.063 Sum_probs=124.9
Q ss_pred CCCCcEEEEecccchh----------hhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCC
Q psy3760 90 YDTGNLTIATTHTQAR----------YALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDK 157 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~----------~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~ 157 (306)
...+.|+||+...... .+...++..+.++. ++++++...+..++++.|.+|++|+++...... ....
T Consensus 39 ~~~~~l~v~~~~~~~P~~~~~~g~~~G~~~dl~~~i~~~~-g~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~ 117 (272)
T 2pvu_A 39 ATKKKVVVGTDAAFAPFEYMQKGKIVGFDVDLLDAVMKAA-GLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQS 117 (272)
T ss_dssp CCCCCEEEEECCCBTTTBEEETTEEESHHHHHHHHHHHHH-TCCEEEEECCHHHHHHHHHHTSSSEECSSCBCCHHHHTT
T ss_pred ccCCeEEEEECCCCCCeEEecCCeEEEEHHHHHHHHHHHh-CCceEEEECCHHHHHHHHhCCCCCEEEeCCcCCHHHHhc
Confidence 3467899999743222 36677888887765 888999888899999999999999998521111 1123
Q ss_pred ce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHh
Q psy3760 158 LI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236 (306)
Q Consensus 158 ~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (306)
+. +.++.....+++++++++ ..+++||.+.++.... +......+.+.+ + .......+++...++.++.+
T Consensus 118 ~~~s~p~~~~~~~l~~~~~~~-----i~~~~dL~g~~i~~~~-g~~~~~~l~~~~---~-~~~~i~~~~~~~~~~~~l~~ 187 (272)
T 2pvu_A 118 YDFSDPYFEATQVILVKQGSP-----VKNALDLKGKTIGVQN-ATTGQEAAEKLF---G-KGPHIKKFETTVVAIMELLN 187 (272)
T ss_dssp EEECSCCEEECEEEEEETTCC-----CCSGGGGTTSCEEEET-TSHHHHHHHHHH---C-SSTTEEEESSHHHHHHHHHT
T ss_pred CccchhhhccceEEEEECCCC-----CCCHHHhCCCeEEEEc-CchHHHHHHHhc---C-CCCeEEEcCCHHHHHHHHHc
Confidence 33 367888899999999986 2478999999876654 433333333333 2 12223467899999999999
Q ss_pred ccc-eeeeecceeccc-c-cC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhh
Q psy3760 237 RMG-IGIIASIAFDSN-R-DK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 237 g~g-i~~~p~~~~~~~-~-~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (306)
|.. .++.+...+... . .+ ++..++.........++++.+++ ......|-+.|.+..+....+++
T Consensus 188 G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~~~l~~l~~~g~~~~i 256 (272)
T 2pvu_A 188 GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKN---SELKAKVDEALKNVINSGKYTEI 256 (272)
T ss_dssp TSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETT---CTTHHHHHHHHHHHHHTTHHHHH
T ss_pred CCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCC---HHHHHHHHHHHHHHHhCChHHHH
Confidence 944 445554443332 1 22 25555433212345778888887 33444444444444333334443
No 51
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=98.80 E-value=4.3e-07 Score=73.41 Aligned_cols=200 Identities=11% Similarity=0.045 Sum_probs=127.2
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHc-CC-eeEEEEccccC----CCCCc--eeecc
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRN-DQ-ADIAIVTEILS----PSDKL--ISIPC 163 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~-~~-~Di~i~~~~~~----~~~~~--~~~~l 163 (306)
.++|+|.+..++ ...+..++..|.++||++++++...++.++..++.+ |. +|+.+...... ...++ ...++
T Consensus 4 ~~~l~v~~a~s~-~~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~ 82 (295)
T 3cij_A 4 NVKLKVFHAGSL-TEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMF 82 (295)
T ss_dssp -CEEEEEEEGGG-HHHHHHHHHHHHHHCTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEE
T ss_pred CceEEEEecCCH-HHHHHHHHHHHHHHCCCceEEEEeCcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEE
Confidence 467999887654 457888999999999999999999999999999998 74 99999853210 12233 24567
Q ss_pred ccceEEEEecCCCCCCC-CCCcChhh-hc--CCCeEeecCCCC-cHHHHHH----------------HHHhC--C-----
Q psy3760 164 YQWEYVIIVPLDHPLLL-LNSISLKE-IS--NYPLITYDLSFS-GRIKLDR----------------EFSLQ--K----- 215 (306)
Q Consensus 164 ~~~~~~~v~~~~~~l~~-~~~i~~~d-l~--~~~~i~~~~~~~-~~~~~~~----------------~~~~~--~----- 215 (306)
....++++++++++... ..+.+|.| |. ..+++..++... ....... .+... .
T Consensus 83 ~~~~lvl~~~~~~~~~~~i~~~~w~dll~~~~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (295)
T 3cij_A 83 AKNQIVLAYRNDSRYADEINSQNWYEILKRPDVRFGFSNPNDDPCGYRSLMAIQLAELYYNDPTIFDELVAKNSNLRFSE 162 (295)
T ss_dssp EECCEEEEECTTSTTTTTCCTTTHHHHHTSTTCCEEEECTTTCHHHHHHHHHHHHHHHHTTCTTHHHHHTGGGBSCCEEE
T ss_pred EeeeEEEEEeCCCccccccCcccHHHHhcCCCcEEEEeCCCcCCccHHHHHHHHHHHHhccCCcHHHHHhhccccccccc
Confidence 78899999999987542 23458999 43 345776665422 2111111 11111 0
Q ss_pred -------C-------ce--eEEEEecCHHHHHHHHHhcc-ceeeeecceecccccCCceeeecCCCC-------------
Q psy3760 216 -------L-------TP--YIVLETINSDIIKTYVELRM-GIGIIASIAFDSNRDKNLRSISASHLF------------- 265 (306)
Q Consensus 216 -------~-------~~--~~~~~~~~~~~~~~~v~~g~-gi~~~p~~~~~~~~~~~l~~~~~~~~~------------- 265 (306)
+ .+ +......+...+..++.+|. .++++....+... ++..+.++...
T Consensus 163 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~---~~~~~~~P~~~~~~~~~~~~~y~~ 239 (295)
T 3cij_A 163 DNGSYVLRMPSSERIEINKSKIMIRSMEMELIHLVESGELDYFFIYKSVAKQH---GFNFVELPVEIDLSSPDYAELYSK 239 (295)
T ss_dssp ETTEEEEECCCGGGCCBCTTTEEEESSTHHHHHHHHTTSCSEEEEEHHHHHHT---TCEEEECCTTTSSCCGGGHHHHTT
T ss_pred cCCcccccccccccccccccceeecccHHHHHHHHhCCCCCEEEEEeehhhhC---CCCEEECchhhccCCccccccccc
Confidence 0 01 11234456668889999994 6677665444321 23333343321
Q ss_pred -------------ccceEEEEEeCCccccHHHHHHHHHHhHHh
Q psy3760 266 -------------GTTISRVIIKQGTYLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 266 -------------~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 295 (306)
....+.+...++......+++|+++|.+.=
T Consensus 240 ~~~~~~~~~~~~~~~i~~~~~i~k~a~~~~~A~~Fi~fl~S~e 282 (295)
T 3cij_A 240 VKVVLANGKEVTGKPIVYGITIPKNAENRELAVEFVKLVISEE 282 (295)
T ss_dssp EEEECTTSCEEECCCCEEEEECCTTCSCHHHHHHHHHHHHSHH
T ss_pred eEEeccCCccccCCceEEEEEeecCCCCHHHHHHHHHHHhChh
Confidence 123456667777777889999999998653
No 52
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=98.80 E-value=1.1e-06 Score=70.95 Aligned_cols=202 Identities=11% Similarity=0.052 Sum_probs=127.8
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHc-CC-eeEEEEccccC----CCCCc--eeecc
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRN-DQ-ADIAIVTEILS----PSDKL--ISIPC 163 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~-~~-~Di~i~~~~~~----~~~~~--~~~~l 163 (306)
.++|+|.+..++ ...+..++..|.++||++++++...++.++..++.+ |. +|+.+...... ...++ ...++
T Consensus 4 ~~~l~v~~a~s~-~~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~ 82 (296)
T 3cfx_A 4 GEVLTVFHAGSL-SVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAF 82 (296)
T ss_dssp CCEEEEEECGGG-HHHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEE
T ss_pred CceEEEEecccH-HHHHHHHHHHHHHHCCCceEEEEeCchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeee
Confidence 467999987654 457888999999999999999999999999999998 74 99999853210 12333 24567
Q ss_pred ccceEEEEecCCCCCCCC-CCcChhh-hc--CCCeEeecCCC-CcHH----HHH------------HHHHhC--C-----
Q psy3760 164 YQWEYVIIVPLDHPLLLL-NSISLKE-IS--NYPLITYDLSF-SGRI----KLD------------REFSLQ--K----- 215 (306)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~-~~i~~~d-l~--~~~~i~~~~~~-~~~~----~~~------------~~~~~~--~----- 215 (306)
....++++++++++.... .+.+|.| |. ..++...++.. .... .+. +.+... +
T Consensus 83 ~~~~l~i~~~~~~~~~~~~~~~~w~dll~~~~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~ 162 (296)
T 3cfx_A 83 ARNQMILAYTNESKYGDEINTDNWYEILRRPDVRYGFSNPNDDPAGYRSQMVTQLAESYYNDDMIYDDLMLANTGMTLTT 162 (296)
T ss_dssp EECCEEEEECTTSTTTTTCCTTTHHHHHHSTTCCEEEECTTTCHHHHHHHHHHHHHHHHTTCTTHHHHHTGGGSSCEEEE
T ss_pred EeeeEEEEEeCCCccccCCCcccHHHHhCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHhhcCccHHHHHhhccccccccc
Confidence 778899999999875422 3458999 53 34566666542 2211 111 111111 0
Q ss_pred ---------------Ccee--EEEEecCHHHHHHHHHhccc-eeeeecceecccccCCceeeecCCCC------------
Q psy3760 216 ---------------LTPY--IVLETINSDIIKTYVELRMG-IGIIASIAFDSNRDKNLRSISASHLF------------ 265 (306)
Q Consensus 216 ---------------~~~~--~~~~~~~~~~~~~~v~~g~g-i~~~p~~~~~~~~~~~l~~~~~~~~~------------ 265 (306)
..|+ ......+...+..++.+|.+ ++++....+... ++..+.++...
T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~---~~~~~~~P~~~~~~~~~~~~~y~ 239 (296)
T 3cfx_A 163 EENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAEQH---GFEYVALPPAIDLSSLEYADNYS 239 (296)
T ss_dssp CTTSCEEEECCCGGGCCCCTTTEEEESSGGGGHHHHHTTSCSEEEEEHHHHHHH---TCEEECCCTTTSSCCGGGHHHHT
T ss_pred ccCCcccccccccccccccccceeecccHHHHHHHHHcCCCCEEEeehhhHhhC---CCCEEECChhhcccCcccccccc
Confidence 0111 12344566678899999954 666665443221 22333333211
Q ss_pred --------------ccceEEEEEeCCccccHHHHHHHHHHhHHhhH
Q psy3760 266 --------------GTTISRVIIKQGTYLRSYVYSFIKLLSPKLNR 297 (306)
Q Consensus 266 --------------~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (306)
......+...++....+.+++|+++|.+.=.+
T Consensus 240 ~v~~~~~~g~~~~~~~i~~~~~i~k~a~~~~~A~~Fi~fllS~e~q 285 (296)
T 3cfx_A 240 KVQVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGETGQ 285 (296)
T ss_dssp TEEEECTTSCEEECCCCEEEEECCTTCSCHHHHHHHHHHHHSHHHH
T ss_pred ceeeeccCCccccCCceEEEEEeecCCCCHHHHHHHHHHHhChHHH
Confidence 11345666777777788999999999865333
No 53
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=98.79 E-value=1.3e-07 Score=73.79 Aligned_cols=202 Identities=13% Similarity=0.076 Sum_probs=124.3
Q ss_pred CCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCc
Q psy3760 92 TGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKL 158 (306)
Q Consensus 92 ~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~ 158 (306)
.+.|+||+..... ..+...++..+.++. ++++++...+...++..|.+|++|+++...... ....+
T Consensus 3 ~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~ 81 (239)
T 1lst_A 3 PQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRM-QVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEI 81 (239)
T ss_dssp CSEEEEEECSCBTTTBEECTTCCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHHHC
T ss_pred cceEEEEECCCcCCeeEECCCCCEeeEHHHHHHHHHHHH-CCeEEEEeCCHHHHHHHHhCCCCCEEEECcCcCHHHhhce
Confidence 4789999843221 235568888888876 899999999999999999999999997621111 11222
Q ss_pred e-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhc
Q psy3760 159 I-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELR 237 (306)
Q Consensus 159 ~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 237 (306)
. +.++.....+++++++++.. .+++||.+.++.. ..+......+.+.+...+. ....+++...++.++.+|
T Consensus 82 ~~s~p~~~~~~~l~~~~~~~~~----~~~~dL~g~~v~~-~~g~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~G 153 (239)
T 1lst_A 82 AFSDKLYAADSRLIAAKGSPIQ----PTLESLKGKHVGV-LQGSTQEAYANDNWRTKGV---DVVAYANQDLIYSDLTAG 153 (239)
T ss_dssp EECSCSBCCCEEEEEETTCCCC----SSHHHHTTCEEEE-ETTSHHHHHHHHHTGGGTC---EEEEESSHHHHHHHHHTT
T ss_pred eecccceeCceEEEEeCCCCCC----CCHHHhCCCEEEE-EcCccHHHHHHHhcccCCC---eEEEcCCHHHHHHHHHcC
Confidence 2 34788899999999998743 4799999988554 4454444445544433333 345688999999999999
Q ss_pred cc-eeeeecceecc--c-c--cCCceeeecCCCCc---cceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 238 MG-IGIIASIAFDS--N-R--DKNLRSISASHLFG---TTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 238 ~g-i~~~p~~~~~~--~-~--~~~l~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
.. .++.+...+.. . . ..++..++.+.... ..+++++++++. ......|-+.|.+.-+....+++.
T Consensus 154 ~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~--~~l~~~~~~~l~~l~~~G~~~~i~ 227 (239)
T 1lst_A 154 RLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDD--TELKAAFDKALTELRQDGTYDKMA 227 (239)
T ss_dssp SCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTC--HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCC--HHHHHHHHHHHHHHHHCccHHHHH
Confidence 44 34444433221 1 1 12344443222111 125677777652 334444444444444443455544
No 54
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=98.78 E-value=7.5e-07 Score=69.00 Aligned_cols=188 Identities=11% Similarity=0.036 Sum_probs=120.2
Q ss_pred CCCcEEEEecccchhh------------hhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccC--CC
Q psy3760 91 DTGNLTIATTHTQARY------------ALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILS--PS 155 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~------------~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~--~~ 155 (306)
..+.|+||+.+..... +...++..+.++. ++++++... +..++++.+.+|++|+++...... ..
T Consensus 2 ~~~~l~v~~~~~~P~~~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~ 80 (233)
T 1ii5_A 2 SAMALKVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAESQ-KWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERA 80 (233)
T ss_dssp CSCCEEEEECCCTTTCEEC-----CEESHHHHHHHHHHHHH-TCCEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHH
T ss_pred CCceEEEEecCCCCeEEEecCCCCCEEEEeHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHCCCcCEEEeeeecCcccc
Confidence 3568999997642222 2345777777665 899999998 999999999999999998531111 11
Q ss_pred --CCce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHH
Q psy3760 156 --DKLI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKT 232 (306)
Q Consensus 156 --~~~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (306)
..+. +.++.....+++++++++ ....+++||.+.++...... .. ..++...+. ....+++...++.
T Consensus 81 ~~~~~~~s~p~~~~~~~~~~~~~~~---~~i~~~~dL~g~~v~~~~g~-~~----~~~l~~~~~---~~~~~~~~~~~~~ 149 (233)
T 1ii5_A 81 AIEGITFTQPYFSSGIGLLIPGTAT---PLFRSVGDLKNKEVAVVRDT-TA----VDWANFYQA---DVRETNNLTAAIT 149 (233)
T ss_dssp TSTTEEECCCCEEEEEEEEEEGGGT---TTCSSGGGGTTCEEEEETTS-HH----HHHHHHTTC---EEEEESSHHHHHH
T ss_pred ccceeEEccceeecCeEEEEECCCC---CCCCCHHHhCCCeEEEECCc-cH----HHHHHHcCC---CeEEcCCHHHHHH
Confidence 3344 347888899999999885 12457899999887765432 22 334444443 3456789999999
Q ss_pred HHHhccceeeee-cceeccc-c-cC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHh
Q psy3760 233 YVELRMGIGIIA-SIAFDSN-R-DK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLS 292 (306)
Q Consensus 233 ~v~~g~gi~~~p-~~~~~~~-~-~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 292 (306)
++.+|..=+++. ...+... . .+ .+..++. ......++++.+++......+.++++.++
T Consensus 150 ~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~l~~~~~~~l~~l~ 212 (233)
T 1ii5_A 150 LLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEI--RVSLEPYGFVLKENSPLQKTINVEMLNLL 212 (233)
T ss_dssp HHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSC--CSEEEEEEEEEETTCTTHHHHHHHHHHHH
T ss_pred HHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCc--cccccceEEEEcCCchHHHHHHHHHHHHH
Confidence 999997644444 3333322 1 22 3444332 23345788888887544444555544443
No 55
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=98.78 E-value=1.2e-09 Score=65.90 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccC--HhHHHHHH
Q psy3760 9 VREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT--KPGQAILR 68 (306)
Q Consensus 9 f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT--~~G~~l~~ 68 (306)
+..+++.+ ||++||+.||||||+||++| |.++++ .|| +.|+.+++
T Consensus 7 L~~~~~~~-s~t~aA~~L~vtQ~AVS~~i-------------r~~r~v-~Lt~~~~G~~~~~ 53 (66)
T 2ovg_A 7 LKDYAMRF-GQTKTAKDLGVYPSSINQAI-------------HAGRKI-FLTINADGSVYAE 53 (66)
T ss_dssp HHHHHHHH-CHHHHHHHHTSCHHHHHHHH-------------HHTCEE-EEEECTTSCEEEE
T ss_pred HHHHHHHC-CHHHHHHHhCCCHHHHHHHH-------------HhCCCc-eeEecCCcceeHH
Confidence 34568888 99999999999999999998 467787 688 88876543
No 56
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=98.77 E-value=9.4e-07 Score=71.30 Aligned_cols=197 Identities=12% Similarity=0.028 Sum_probs=126.8
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHc-CC-eeEEEEccccC----CCCCc--eeecc
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRN-DQ-ADIAIVTEILS----PSDKL--ISIPC 163 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~-~~-~Di~i~~~~~~----~~~~~--~~~~l 163 (306)
.++|+|.+..++ ...+..++..|.++||++++++...++.++..++.+ |. +|+.+...... ...++ ...++
T Consensus 4 ~~~l~v~~a~s~-~~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~ 82 (292)
T 3cfz_A 4 KIVLKIFHAGSL-SVPFEEYEKMFEKEHPNVDVEREPAGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMF 82 (292)
T ss_dssp CEEEEEEEEGGG-HHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEE
T ss_pred CceEEEEEccch-HHHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeee
Confidence 457999877664 457889999999999999999999999999999998 74 99999853210 12233 24567
Q ss_pred ccceEEEEecCCCCCCCC-CCcChhhhc---CCCeEeecCCCC-cHHHHHH-------------HHHhCCCc--------
Q psy3760 164 YQWEYVIIVPLDHPLLLL-NSISLKEIS---NYPLITYDLSFS-GRIKLDR-------------EFSLQKLT-------- 217 (306)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~-~~i~~~dl~---~~~~i~~~~~~~-~~~~~~~-------------~~~~~~~~-------- 217 (306)
....++++++++++.... .+.+|.||. ..++...++... ....... ++......
T Consensus 83 ~~~~lvi~~~~~~~~~~~i~~~~w~dll~~p~~~I~~~dp~~~~~G~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~ 162 (292)
T 3cfz_A 83 ARNEIVLAYTDKSKYKDEINSTNWYKILQRPDVKIGFSNPNDDPCGYRTQMVLQLAELYYKDPTIYDNLVLKHSNIKVEE 162 (292)
T ss_dssp EECCEEEEECTTSTTTTTCCTTTHHHHTTSTTCCEEEECTTTCHHHHHHHHHHHHHHHHHTCTTHHHHHTGGGBSCEEEE
T ss_pred EeccEEEEEcCCCccccCCCcccHHHHhcCCCcEEEeCCCCCCCCcHHHHHHHHHHHHhccCCcHHHHHhcccccccccc
Confidence 788999999999875422 345899943 345776665422 2111111 11111100
Q ss_pred ----------------eeEEEEecCHHHHHHHHHhcc-ceeeeecceecccccCCceeeecCCCC---------------
Q psy3760 218 ----------------PYIVLETINSDIIKTYVELRM-GIGIIASIAFDSNRDKNLRSISASHLF--------------- 265 (306)
Q Consensus 218 ----------------~~~~~~~~~~~~~~~~v~~g~-gi~~~p~~~~~~~~~~~l~~~~~~~~~--------------- 265 (306)
.+......+...+..++.+|. .++++..+.+.. .++..+.++...
T Consensus 163 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~---~~~~~~~~P~~~~~~~~~~~~~~~~~~ 239 (292)
T 3cfz_A 163 NNGTYLILVPKELDVDTNKLFVRSKETDLLAPLEAGAFDYLFIYKSVANQ---HHLKYIELPKEINLGYYEYADTYKKVA 239 (292)
T ss_dssp ETTEEEEEECSSCCBCTTTEEEESSGGGGHHHHHTTSSSEEEEEHHHHHH---TTCEEECCCTTTSSCCGGGHHHHTTEE
T ss_pred cCCcccccccccccccccceeecccHHHHHHHHHCCCCCEEEEEehhhhh---CCCCEEECChhhcccCccccchhhcee
Confidence 001244566678889999984 677776554422 133334333321
Q ss_pred ------------ccceEEEEEeCCccccHHHHHHHHHHh
Q psy3760 266 ------------GTTISRVIIKQGTYLRSYVYSFIKLLS 292 (306)
Q Consensus 266 ------------~~~~~~l~~~~~~~~~~~~~~~~~~l~ 292 (306)
......+...++......+++|+++|.
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~i~k~a~~~~~A~~Fi~fl~ 278 (292)
T 3cfz_A 240 LKIIAKNKTINAKPIVYGMTVPTNAPHKKEAIEFVKFVL 278 (292)
T ss_dssp EEEGGGTEEEECCCCEEEEECCTTCTTHHHHHHHHHHHH
T ss_pred eeeccccccccCCceeEEEEeecCCCCHHHHHHHHHHHH
Confidence 113456677777777889999999998
No 57
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=98.68 E-value=3.8e-08 Score=68.04 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=60.6
Q ss_pred chhhHHHHHHHHH-hcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVR-QNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEI 77 (306)
Q Consensus 2 ~~~~l~~f~~v~~-~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~ 77 (306)
|...+++|..+.+ .. +++..|+.+++|||++|++|+.||+ .|...+.|.|++. ..+..+..+.+.++.+++.+
T Consensus 45 ~~~rl~IL~~L~~~~~-s~~ela~~lgis~stvs~~L~~Le~-~Glv~~~~~gr~~-~y~l~~~~l~~~~~~l~~~~ 118 (122)
T 1r1t_A 45 DPNRLRLLSLLARSEL-CVGDLAQAIGVSESAVSHQLRSLRN-LRLVSYRKQGRHV-YYQLQDHHIVALYQNALDHL 118 (122)
T ss_dssp CHHHHHHHHHHTTCCB-CHHHHHHHHTCCHHHHHHHHHHHHH-TTSEEEEEETTEE-EEEESSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEEEeCCEE-EEEEChHHHHHHHHHHHHHH
Confidence 3456778888876 45 9999999999999999999999999 9999999998886 46666667777777777654
No 58
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=98.64 E-value=9.5e-07 Score=68.90 Aligned_cols=191 Identities=19% Similarity=0.133 Sum_probs=122.7
Q ss_pred cEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEcccc----CCCCC---c---eeecc
Q psy3760 94 NLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEIL----SPSDK---L---ISIPC 163 (306)
Q Consensus 94 ~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~----~~~~~---~---~~~~l 163 (306)
.|+|.+..++ ...+..++..|.+++ ++++++...++.++..++. +.+|+++..... ....+ + ....+
T Consensus 2 ~l~v~~~~~~-~~~~~~~~~~F~~~~-gi~V~~~~~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 78 (237)
T 2hxw_A 2 DVNLYGPGGP-HTALKDIANKYSEKT-GVKVNVNFGPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPL 78 (237)
T ss_dssp CEEEEECSST-HHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEE
T ss_pred eEEEEeccch-HHHHHHHHHHHHHHh-CceEEEEeCChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCccccccc
Confidence 3778777664 446788999999885 9999999899999999999 899999986410 01111 2 35567
Q ss_pred ccceEEEEecCCCCCCCCCCcChhhhc--CCCeEeecCC-----CCcHHHHHHHHHhCC-------CceeEEEEecCHHH
Q psy3760 164 YQWEYVIIVPLDHPLLLLNSISLKEIS--NYPLITYDLS-----FSGRIKLDREFSLQK-------LTPYIVLETINSDI 229 (306)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~~~i~~~dl~--~~~~i~~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 229 (306)
....+++++++++|. ...+|+||. +.+++..++. .+........+ ..+ +.++.....++...
T Consensus 79 ~~~~~~l~~~~~~~~---~~~sw~dL~~~~~~i~~~d~~~~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 154 (237)
T 2hxw_A 79 YFREAIILTQKGNPL---KIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIG-RTQDIKTIQNFRNNIVAFVPNSGS 154 (237)
T ss_dssp EEEEEEEEESTTCTT---CCCSHHHHHHSCCCEEECCCTTSSCCTTTTHHHHHHH-TTCCHHHHHHHHHTEEEECCCCTT
T ss_pred ccCceEEEEeCCCCC---CCCCHHHhcCCCcEEEecCCCCCCcccchHHHHHHHH-HccCHHHHHHHhhceEEEcCCHHH
Confidence 788999999998763 346899997 4566655431 11211222222 111 34565445566666
Q ss_pred HHH-HHHhccceeeeecceecccccCCceeeecCCCC-ccceEEEEEeCCccccHHHHHHHHHHhHH
Q psy3760 230 IKT-YVELRMGIGIIASIAFDSNRDKNLRSISASHLF-GTTISRVIIKQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 230 ~~~-~v~~g~gi~~~p~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 294 (306)
+.+ ++..+..++++....+.. ..+.+..+|++... ....+.++..++. .+.+++|++++.+.
T Consensus 155 ~~~~~~~g~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~A~~Fi~fl~s~ 218 (237)
T 2hxw_A 155 ARKLFAQDQADAWITWIDWSKS-NPDIGTAVAIEKDLVVYRTFNVIAKEGA--SKETQDFIAYLSSK 218 (237)
T ss_dssp C--CTTTTTCSEEEEEHHHHHH-STTSSEEEECCTTTCCEEEEEEEECTTC--CHHHHHHHHHTTSH
T ss_pred HHHHHHcCCeeEEEEechhhhc-CCCceEEEecCCceeEEeeeeEEEccCC--hHHHHHHHHHHcCH
Confidence 665 666667777777654432 22456667766532 3445566666665 78999999999765
No 59
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=98.61 E-value=2.6e-07 Score=67.04 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-CCCccccCHhHHHHHHHHHHHHHHHHHHH
Q psy3760 7 RFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-GKRIRGLTKPGQAILRSIEIIMQEIEGLK 81 (306)
Q Consensus 7 ~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-~~~~~~lT~~G~~l~~~a~~il~~~~~~~ 81 (306)
..++.-.... |.+..|+.+++|++++|+.|++||+. | |+.|. ++++ .+|+.|+.++..+......++...
T Consensus 46 ~~~l~~~~~~-~~~~la~~l~vs~~tvs~~l~~Le~~-G--lv~r~~~~~~-~lT~~g~~~~~~~~~~~~~~~~~~ 116 (155)
T 2h09_A 46 SDLIREVGEA-RQVDMAARLGVSQPTVAKMLKRLATM-G--LIEMIPWRGV-FLTAEGEKLAQESRERHQIVENFL 116 (155)
T ss_dssp HHHHHHHSCC-CHHHHHHHHTSCHHHHHHHHHHHHHT-T--CEEEETTTEE-EECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCc-CHHHHHHHhCcCHHHHHHHHHHHHHC-C--CEEEecCCce-EEChhHHHHHHHHHHHHHHHHHHH
Confidence 3344434556 99999999999999999999999998 7 45554 6777 799999999999888877766655
No 60
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=98.57 E-value=2.2e-05 Score=64.61 Aligned_cols=206 Identities=10% Similarity=0.033 Sum_probs=132.3
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHH-cC-CeeEEEEccccC----CCCCc--eeec
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIR-ND-QADIAIVTEILS----PSDKL--ISIP 162 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~-~~-~~Di~i~~~~~~----~~~~~--~~~~ 162 (306)
..++|+|.+..++. ..+..+...|.+++|++++++...++..+..++. .| .+|+.++..... ...++ ....
T Consensus 41 ~a~~L~V~~a~sl~-~~~~~l~~~Fe~~~pgv~V~~~~ggSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~ 119 (354)
T 3k6v_A 41 EGEVLTVFHAGSLS-VPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAA 119 (354)
T ss_dssp --CEEEEEEEGGGH-HHHHHHHHHHHHHSTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEE
T ss_pred CCCcEEEEEecchH-HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceE
Confidence 34579999988754 4678899999999999999999999999999995 34 799999853210 12232 3567
Q ss_pred cccceEEEEecCCCCCCCC-CCcC-hhhhc--CCCeEeecCCCC-cHHHHHHHHH-------------hC-----CCc--
Q psy3760 163 CYQWEYVIIVPLDHPLLLL-NSIS-LKEIS--NYPLITYDLSFS-GRIKLDREFS-------------LQ-----KLT-- 217 (306)
Q Consensus 163 l~~~~~~~v~~~~~~l~~~-~~i~-~~dl~--~~~~i~~~~~~~-~~~~~~~~~~-------------~~-----~~~-- 217 (306)
+....+++++++++|.... ..-+ +++|. +..+...++... ....-.+.++ .. ++.
T Consensus 120 ~a~n~lVliv~~~~p~~~~I~~~~~~~~L~~~~~riai~~P~~~P~G~~a~~~l~~a~~~~~~~gl~~~l~~~~~~v~l~ 199 (354)
T 3k6v_A 120 FARNQMILAYTNESKYGDEINTDNWYEILRRPDVRYGFSNPNDDPAGYRSQMVTQLAESYYNDDMIYDDLMLANTGMTLT 199 (354)
T ss_dssp EEECCEEEEECTTSTTTTTCCTTTHHHHHHSTTCCEEEECTTTCHHHHHHHHHHHHHHHHHTCTTHHHHHTGGGSSCEEE
T ss_pred eECCeEEEEEECCCccccccCcccHHHHhcCCCCEEEEcCCCCCChHHHHHHHHHHHHhhcccccHHHHHhhhccccccc
Confidence 8888999999999875311 1113 46776 356777776542 2221111111 11 110
Q ss_pred --------------------eeEEEEecCHHHHHHHHHhc-cceeeeecceecccccCCceeeecCCCC-----------
Q psy3760 218 --------------------PYIVLETINSDIIKTYVELR-MGIGIIASIAFDSNRDKNLRSISASHLF----------- 265 (306)
Q Consensus 218 --------------------~~~~~~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~~~~~l~~~~~~~~~----------- 265 (306)
.+......+...+...+..| .-++++..+.+.. .++.+++++...
T Consensus 200 ~~~~g~~~~~~p~~~~~~~~~~k~v~~~~v~~~l~~v~~G~aDag~vy~S~a~~---~~l~~v~lP~~~n~~~~~~~~~y 276 (354)
T 3k6v_A 200 TEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAEQ---HGFEYVALPPAIDLSSLEYADNY 276 (354)
T ss_dssp ECTTSCEEEECCCHHHHCCCTTTEEEESSHHHHHHHHHHTSCSEEEEEHHHHHH---HTCEEEECCTTTSSCCGGGHHHH
T ss_pred cccCcccccccccccccccccceeEeCCCHHHHHHHHHcCCCCEEEEEhhhhhh---cCCcEEeCChhhccccccccccc
Confidence 12345678899999999998 4455555544433 135666665421
Q ss_pred ---------------ccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHH
Q psy3760 266 ---------------GTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 266 ---------------~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
....+.+...++....+..++|+++|.+.-.+...
T Consensus 277 ~~v~v~~~~~~~~~~~Pi~y~~ai~k~a~~~~~A~~Fi~fL~S~eaq~i~ 326 (354)
T 3k6v_A 277 SKVQVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGETGQQIF 326 (354)
T ss_dssp TTEEEECTTSCEEECCCCEEEEECCTTCTTHHHHHHHHHHHHSHHHHHHH
T ss_pred cceeeeccccccccCCceeEeEEeecCCCCHHHHHHHHHHHcCHHHHHHH
Confidence 12356666677777778999999999865444333
No 61
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=98.56 E-value=8.1e-06 Score=66.81 Aligned_cols=200 Identities=14% Similarity=0.111 Sum_probs=124.3
Q ss_pred CCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEcccc-----CCCCCceeecc
Q psy3760 90 YDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEIL-----SPSDKLISIPC 163 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~-----~~~~~~~~~~l 163 (306)
....+||||+.+.....++......|.+..+++++++... +...+.+.|.+|++|++++.... .....+.....
T Consensus 26 ~~~~~lrig~~~~~~p~~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~ 105 (324)
T 3ksx_A 26 AEPAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGW 105 (324)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEEecCCchhHHHHHhhCHHHHhcCCCceEEEECCCHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEE
Confidence 3456899999987665666666677888888999999874 66788999999999999874211 11222222211
Q ss_pred ---ccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCcee-EEEEecCHHHHHHHHHhcc-
Q psy3760 164 ---YQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY-IVLETINSDIIKTYVELRM- 238 (306)
Q Consensus 164 ---~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~g~- 238 (306)
......++++++.+. -+++||.+.++... .+......+..++...|+.+. +.+..-+...+..++.+|.
T Consensus 106 ~~~~~~~~~lvv~~~s~I-----~s~~DLkGk~i~v~-~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~v 179 (324)
T 3ksx_A 106 VPPTPKAETILVPSKSAL-----RTVADLKGKRIAFQ-KGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQV 179 (324)
T ss_dssp ECCCGGGEEEEEETTCSC-----CSGGGGTTCEEEEC-TTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTCC
T ss_pred ecCCCCceEEEEeCCCCC-----CCHHHhCCCEEEec-CCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCCC
Confidence 123577888887653 37899998887665 555555567788999998763 2333336778888888883
Q ss_pred ceeeeecceeccc-ccCCceeeecCCCCccceEEEEEeCCc--cccHHHHHHHHHHhHHh
Q psy3760 239 GIGIIASIAFDSN-RDKNLRSISASHLFGTTISRVIIKQGT--YLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 239 gi~~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~ 295 (306)
-.++++....... ..+..+.+...........+++.+++. ..+..++.|++.+.+..
T Consensus 180 Da~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a~ 239 (324)
T 3ksx_A 180 DAWAIWDPWYSALTLDGSARLLANGEGLGLTGGFFLSSRRYATAWGPFVQQVMGTLNQAD 239 (324)
T ss_dssp SEEEEETTHHHHHHHTTSEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CEEEEccHHHHHHHhcCCcEEEecccccCCCccEEEECHHHHHHCHHHHHHHHHHHHHHH
Confidence 2233444333222 334555443222222222334444432 23567788887776554
No 62
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=98.51 E-value=6.5e-06 Score=64.51 Aligned_cols=198 Identities=10% Similarity=0.006 Sum_probs=124.1
Q ss_pred CCCcEEEEecccch----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCc
Q psy3760 91 DTGNLTIATTHTQA----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKL 158 (306)
Q Consensus 91 ~~~~l~I~~~~~~~----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~ 158 (306)
..+.|+||+..... ..+...++..+.++. ++++++...+..+++..+.+|++|+++...... ....+
T Consensus 22 ~~~~l~v~~~~~~~P~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~ 100 (249)
T 4f3p_A 22 MAKELVVGTDTSFMPFEFKQGDKYVGFDLDLWAEIAKGA-GWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAI 100 (249)
T ss_dssp --CCEEEEEESCBTTTBEEETTEEESHHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHTTSCSEEEEEEECCHHHHTTE
T ss_pred cCceEEEEeCCCCCCeEEecCCeEEEEhHHHHHHHHHHc-CCceEEEecCHHHHHHHHHCCCCCEEEeccccCHHHHcCc
Confidence 45789999973221 246777888877764 788888888899999999999999977431111 11222
Q ss_pred -eeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhc
Q psy3760 159 -ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELR 237 (306)
Q Consensus 159 -~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 237 (306)
-+.++.....+++++++.+ ..-+++||.+..+.... +... ..++..... ......+++...++.++.+|
T Consensus 101 ~~s~p~~~~~~~~~~~~~~~----~i~~~~dL~g~~i~v~~-g~~~----~~~l~~~~~-~~~~~~~~~~~~~~~~L~~G 170 (249)
T 4f3p_A 101 DFSDPYYDSGLAAMVQANNT----TIKSIDDLNGKVIAAKT-GTAT----IDWIKAHLK-PKEIRQFPNIDQAYLALEAG 170 (249)
T ss_dssp EECSCCEEEEEEEEEETTCC----SCCSSGGGTTSEEEEET-TSHH----HHHHHHHCC-CSEEEEESSHHHHHHHHHTT
T ss_pred ceecceeeccEEEEEECCCC----CcCChHHhCCCEEEEeC-CChH----HHHHHhcCC-CceEEEcCCHHHHHHHHHcC
Confidence 2457888899999998874 23578999888766554 3322 333433322 23456778999999999999
Q ss_pred cc-eeeeecceeccc--c--cCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 238 MG-IGIIASIAFDSN--R--DKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 238 ~g-i~~~p~~~~~~~--~--~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
.. ..+.+...+... . ...+...+.. ....+++++.+++.. ....|-+.|++.-+....+++.
T Consensus 171 rvDa~i~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~~~---l~~~l~~~l~~l~~~g~~~~i~ 237 (249)
T 4f3p_A 171 RVDAAMHDTPNVLFFVNNEGKGRVKVAGAP--VSGDKYGIGFPKGSP---LVAKVNAELARMKADGRYAKIY 237 (249)
T ss_dssp SSSEEEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEEEEEEETTCT---HHHHHHHHHHHHHHHTHHHHHH
T ss_pred CeeEEEeCcHHHHHHHHhCCCCceEEecCC--CCCccEEEEEcCCch---HHHHHHHHHHHHHhCCcHHHHH
Confidence 54 344444433332 1 2335554432 234577888888763 5555555555544444555543
No 63
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=98.51 E-value=2.2e-06 Score=66.72 Aligned_cols=199 Identities=10% Similarity=0.014 Sum_probs=126.2
Q ss_pred CCcEEEEecccch------------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCC
Q psy3760 92 TGNLTIATTHTQA------------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDK 157 (306)
Q Consensus 92 ~~~l~I~~~~~~~------------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~ 157 (306)
.++|+||+..... ..+...++..+.++. ++.+++...+..++++.+.+|++|+++...... ....
T Consensus 2 ~~~l~v~~~~~~~P~~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~ 80 (237)
T 3kzg_A 2 SLNLTIGTSKFNPPFEVWSGNNSSLYGFDIDLMQEICRRL-HATCTFEAYIFDDLFPALKNREVDLVIASMIITDERKKH 80 (237)
T ss_dssp CCEEEEEEESEETTTEECCCTTSCCBSHHHHHHHHHHHHT-TCEEEEEEECGGGHHHHHHTTSSSEECSSCBCCTTGGGT
T ss_pred CceEEEEECCCCCCeEEEeCCCCCEeeehHHHHHHHHHHh-CCceEEEEcCHHHHHHHHhCCCCCEEEEccccChhHhcc
Confidence 4678888865211 245567888887774 799999988999999999999999887532211 1223
Q ss_pred ce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHh
Q psy3760 158 LI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236 (306)
Q Consensus 158 ~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (306)
+. +.++.....+++++++.+ .-+++||.+..+.... +...... +...... .....+++...++.++.+
T Consensus 81 ~~fs~p~~~~~~~~~~~~~~~-----~~~~~dL~g~~i~~~~-g~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~l~~ 149 (237)
T 3kzg_A 81 FIFSLPYMESNSQYITTVDSK-----ISTFDDLHGKKIGVRK-GTPYARQ----VLSENRN-NQVIFYELIQDMLLGLSN 149 (237)
T ss_dssp CEECCCSBCCEEEEEEETTCS-----CCSGGGGTTCEEEEET-TSTHHHH----HHHTCSS-CEEEEESSHHHHHHHHHT
T ss_pred ceeeeeeeecceEEEEECCCC-----CCCHHHhCCCEEEEec-CCHHHHH----HHHhCCC-CcEEEeCCHHHHHHHHHc
Confidence 33 457889999999999886 3478999987766654 3332222 2222211 345678899999999999
Q ss_pred ccce-eeeecceeccc--ccC--------CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhhc
Q psy3760 237 RMGI-GIIASIAFDSN--RDK--------NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKILN 305 (306)
Q Consensus 237 g~gi-~~~p~~~~~~~--~~~--------~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 305 (306)
|..= .+.+...+... ..+ ++..++.+. ....+++++.+++ .......|-+.|++.-+....+++.+
T Consensus 150 G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~k~--~~~l~~~l~~~l~~l~~~G~~~~i~~ 226 (237)
T 3kzg_A 150 NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKI-SIGEGYSIMANPD--QFVLIKKINKILLEMEADGTYLRLYS 226 (237)
T ss_dssp TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEE-ECTTCBCCEECGG--GHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred CCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCcc-ccCccEEEEEcCC--CHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 9543 34444333332 223 555554322 1334667777776 24555666666666555556665543
No 64
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=98.51 E-value=1.7e-06 Score=67.77 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=123.1
Q ss_pred CCCCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCC--CC
Q psy3760 90 YDTGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSP--SD 156 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~--~~ 156 (306)
...++|+||+...+. ..+...++..+.++.+++++++...+...++..|.+|++|+++......+ ..
T Consensus 6 ~~~~tl~vg~~~~~pP~~~~d~~G~~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~eR~~ 85 (243)
T 4gvo_A 6 QKVQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREK 85 (243)
T ss_dssp --CEEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHTCTTEEEEEEECCGGGHHHHHHTTSCSEECSCCBCCHHHHH
T ss_pred ccCCeEEEEECCCCCCeEEECCCCcEEEhHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCCEecccCCCCHHHhh
Confidence 346789999864322 23567788888887779999999999999999999999999875311111 11
Q ss_pred Cce-eeccc-cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHH
Q psy3760 157 KLI-SIPCY-QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYV 234 (306)
Q Consensus 157 ~~~-~~~l~-~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (306)
.+. +.+.+ .....+++.++.+ ..-+++||.+....... +......+..+....+......+...+...++.++
T Consensus 86 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~~dL~g~~v~v~~-gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 160 (243)
T 4gvo_A 86 KFLFNDVAYNNFPLQLTVLDSNN----SINSTKDLAGKRVITSA-TSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQL 160 (243)
T ss_dssp HSEECSSCCEECCEEEEEETTCC----SCSSGGGGTTCEEEECT-TCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHH
T ss_pred hhhhhhhhcccccceEEEecccc----ccCchHHhcCCeEEEec-CchHHHHHHHHHHhccccceeccccCChHHHHHHH
Confidence 233 23433 3455566655543 23478999888776554 33333455566666666566666778888899999
Q ss_pred Hhccceeeeeccee-ccc-ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 235 ELRMGIGIIASIAF-DSN-RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 235 ~~g~gi~~~p~~~~-~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
..|..=+++..... ... ....+....+.......++++..+++. +.....|=+.|++.-+....+++.
T Consensus 161 ~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~l~~~in~~l~~l~~~G~~~~i~ 230 (243)
T 4gvo_A 161 KTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDE--TKLSKKVDEALQSIIDDGTLKKLS 230 (243)
T ss_dssp HHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTC--HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCC--HHHHHHHHHHHHHHHhCcHHHHHH
Confidence 99955444443222 222 223332222222233446777777763 334444444444443333444443
No 65
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=98.51 E-value=6.8e-06 Score=64.88 Aligned_cols=202 Identities=12% Similarity=0.071 Sum_probs=128.3
Q ss_pred CCCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCC
Q psy3760 91 DTGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDK 157 (306)
Q Consensus 91 ~~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~ 157 (306)
..+.|+||+..... ..+...++..+.++. ++++++...+..++.+.+.+|++|+++...... ....
T Consensus 27 ~~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~ 105 (259)
T 4dz1_A 27 EGRTLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSR-HCKLNITEYAWDGMLGAVASGQADVAFSGISITDKRKKV 105 (259)
T ss_dssp TTCEEEEEECCCBTTTBEECTTCCEESHHHHHHHHHHHHH-TCEEEEEECCHHHHHHHHHHTSSSEEEEEEECCHHHHTT
T ss_pred cCCeEEEEECCCCCCeEEECCCCCEEEeHHHHHHHHHHHh-CCeEEEEEcCHHHHHHHHhCCCCCEEEECCcCCHHHhhc
Confidence 45789999974311 235556777776654 789999999999999999999999977531111 1222
Q ss_pred ce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCce-eEEEEecCHHHHHHHHH
Q psy3760 158 LI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTP-YIVLETINSDIIKTYVE 235 (306)
Q Consensus 158 ~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~ 235 (306)
+. +.+++....++++.++.+. ..-+++||.+....... +......+.+.+...|+.+ .....+++...++.++.
T Consensus 106 ~~fs~p~~~~~~~~~~~~~~~~---~i~~~~dL~g~~v~v~~-g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 181 (259)
T 4dz1_A 106 IDFSEPYYINSFYLVSMANHKI---TLNNLNELNKYSIGYPR-GMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLK 181 (259)
T ss_dssp EEECCCSEEEEEEEEEETTSCC---CCCSGGGGGGSCEEEET-TSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHH
T ss_pred cccccchhhCceEEEEEcCCCC---CCCCHHHhCCCEEEEeC-CcHHHHHHHHhcccccccccceeEecCCHHHHHHHHH
Confidence 32 4578888888888776531 23478999998877654 4445566666666666654 34556789999999999
Q ss_pred hcccee-eeecceeccc-c--cCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhh
Q psy3760 236 LRMGIG-IIASIAFDSN-R--DKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 236 ~g~gi~-~~p~~~~~~~-~--~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (306)
+|..=+ +.....+..+ . ...+..... .....++++..+++. +....|-+.|++ -....++++
T Consensus 182 ~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~---~l~~~ln~~l~~-~g~~~l~~~ 247 (259)
T 4dz1_A 182 NGNLDLAFIEEPVYFTFKNKKKMPIESRYV--FKNVDQLGIAFKKGS---PVRDDFNLWLKE-QGPQKISGI 247 (259)
T ss_dssp HTSCSEEEEEHHHHHHHHHTSCCCEEEEEE--EEEEEEEEEEEETTC---HHHHHHHHHHHH-HCHHHHHHH
T ss_pred cCCCCEEEecHHHHHHHhccCCCceEeecc--cCCCceEEEEEeCCh---HHHHHHHHHHHh-CCCeehHHH
Confidence 994433 3444333222 1 223333222 123457888888875 466666666665 333333433
No 66
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=98.49 E-value=6.9e-07 Score=63.92 Aligned_cols=77 Identities=16% Similarity=0.315 Sum_probs=63.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCC-----CccccCHhHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGK-----RIRGLTKPGQAILRSIEIIMQ 75 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~-----~~~~lT~~G~~l~~~a~~il~ 75 (306)
++..++.++..+.+.+.|++.-|+.+++|+|++|+.|++||+. |.--..+++. .+ .||+.|+.+++.+.....
T Consensus 35 lt~~~~~iL~~l~~~~~~~~~la~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~-~LT~~G~~~~~~~~~~~~ 112 (144)
T 3f3x_A 35 LSYLDFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAK-GLVRRIRDSKDRRIVIV-EITPKGRQVLLEANEVLR 112 (144)
T ss_dssp CCHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEE-EECHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCChhHHHHHHHHHHHC-CCEEeccCCCCCceEEE-EECHHHHHHHHHHHHHHH
Confidence 3567888999998876589999999999999999999999998 6655554432 35 899999999999888877
Q ss_pred HHHH
Q psy3760 76 EIEG 79 (306)
Q Consensus 76 ~~~~ 79 (306)
.+.+
T Consensus 113 ~~~~ 116 (144)
T 3f3x_A 113 NLVN 116 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 67
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=98.49 E-value=1.4e-05 Score=61.67 Aligned_cols=201 Identities=9% Similarity=0.033 Sum_probs=126.9
Q ss_pred cCCCCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEcccc-CCCC
Q psy3760 89 AYDTGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEIL-SPSD 156 (306)
Q Consensus 89 ~~~~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~-~~~~ 156 (306)
....++|+||+..... ..+...++..+.++. ++++++...+..++...+.+|++|++...... ....
T Consensus 7 ~~~~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~r~~ 85 (234)
T 3h7m_A 7 RDRHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVM-GMTVEFRLGAWSEMFSALKSGRVDVLQGISWSEKRAR 85 (234)
T ss_dssp CCSSSCEEEEEETEETTTEEECTTSCEESHHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHTTSSSEEEEEECCHHHHT
T ss_pred cCCCCEEEEEecCCCCCeEEECCCCCEeeeEHHHHHHHHHHc-CCceEEEeCCHHHHHHHHhCCCeeEEEeccCCHhHHh
Confidence 3456789999853221 246677777777664 78888888899999999999999996432211 1112
Q ss_pred Cc-eeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHH
Q psy3760 157 KL-ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235 (306)
Q Consensus 157 ~~-~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (306)
.+ -+.++.....+++++++.+ ..-+++||.+..+...... ....++...+... ....+++...++.++.
T Consensus 86 ~~~~s~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~i~~~~g~-----~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~ 155 (234)
T 3h7m_A 86 QIDFTPPHTIVYHAIFARRDSP----PAAGLEDLRGRKVALHRDG-----IMHEYLAERGYGK-DLVLTPTPADALRLLA 155 (234)
T ss_dssp TEEEEEEEEEEEEEEEEESSSC----CCSSGGGGTTSCEEEETTS-----HHHHHHHTTTCGG-GEEEESSHHHHHHHHH
T ss_pred hcCCCccccccceEEEEECCCC----CCCCHHHhCCCEEEEEeCc-----hHHHHHHhcCCCc-eEEEeCCHHHHHHHHH
Confidence 22 3567788889999999876 2347899999988776532 2345566655433 3456789999999999
Q ss_pred hccc-eeeeecceeccc-c---cCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 236 LRMG-IGIIASIAFDSN-R---DKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 236 ~g~g-i~~~p~~~~~~~-~---~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
+|.. ..+.+....... . ...+...+.. ....++++..+++. ......|-+.|.+.-+....+++.
T Consensus 156 ~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~l~~~l~~~l~~l~~~g~~~~i~ 225 (234)
T 3h7m_A 156 AGGCDYAVVAMVPGMYIIRENRLTNLVPVARS--IAAQRYGYAVRQGD--AELLARFSEGLAILRKTGQYEAIR 225 (234)
T ss_dssp TTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEE--EEEEEEEEEEETTC--HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCCceEEEeccHHHHHHHHhcCCCceEEeccc--cCCCceEEEEeCCC--HHHHHHHHHHHHHHHHcCcHHHHH
Confidence 9944 334444333222 1 2334444322 23456777777763 345555555555554444555554
No 68
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=98.47 E-value=1e-05 Score=62.34 Aligned_cols=199 Identities=9% Similarity=-0.000 Sum_probs=121.9
Q ss_pred CCCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCC
Q psy3760 91 DTGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDK 157 (306)
Q Consensus 91 ~~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~ 157 (306)
..+.|+||+..... ..+...++..+.++. ++++++...+..++...+.+|++|+++...... ....
T Consensus 4 ~a~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~ 82 (229)
T 2y7i_A 4 SARTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEM-QAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQ 82 (229)
T ss_dssp SCCEEEEEECCCBTTTBEECTTSCEESHHHHHHHHHHHHT-TCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT
T ss_pred cCCcEEEEeCCCcCCceEECCCCCCcceeHHHHHHHHHHh-CCeEEEEEcCHHHHHHHHhCCCceEEEecCccCHHHhcc
Confidence 35689999863211 235667888888876 889999998999999999999999998421111 1123
Q ss_pred ce-eeccccc-eEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHH
Q psy3760 158 LI-SIPCYQW-EYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235 (306)
Q Consensus 158 ~~-~~~l~~~-~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (306)
+. +.++... ..++++++++ .-+++||.+.++.... +.... .++...... .....+++...++.++.
T Consensus 83 ~~~s~p~~~~~~~~~~~~~~~------~~~~~dL~g~~v~~~~-g~~~~----~~l~~~~~~-~~~~~~~~~~~~~~~l~ 150 (229)
T 2y7i_A 83 VSFSQPYYEGLSAVVVTRKGA------YHTFADLKGKKVGLEN-GTTHQ----RYLQDKQQA-ITPVAYDSYLNAFTDLK 150 (229)
T ss_dssp SEECSCSBCCCCEEEEEETTS------CCSTGGGTTCEEEEET-TSHHH----HHHHHHCTT-SEEEEESCHHHHHHHHH
T ss_pred eeeccccccCCcEEEEEeCCC------CCCHHHHCCCEEEEec-CCcHH----HHHHHhCCC-CeEEecCCHHHHHHHHH
Confidence 33 4478888 9999999886 3478999988866544 33332 233332211 23456789999999999
Q ss_pred hccceee-eecceeccc--ccCCceeeecCCCCc---cceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 236 LRMGIGI-IASIAFDSN--RDKNLRSISASHLFG---TTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 236 ~g~gi~~-~p~~~~~~~--~~~~l~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
+|..=++ .+....... ..+++..++...... ..+++++.+++. ......|-+.|.+.-+....+++.
T Consensus 151 ~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~l~~~g~~~~i~ 223 (229)
T 2y7i_A 151 NNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKDN--DALLQEINAALDKVKASPEYAQMQ 223 (229)
T ss_dssp TTSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEECTTC--HHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred cCCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEeCCC--HHHHHHHHHHHHHHHhCChHHHHH
Confidence 9954444 333333222 234566554322111 236677777662 345555555555544444455443
No 69
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=98.47 E-value=4.1e-06 Score=67.46 Aligned_cols=196 Identities=9% Similarity=0.090 Sum_probs=119.4
Q ss_pred CcEEEEecccch-----------hhhhHHHHHHHHHhC--CCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCC
Q psy3760 93 GNLTIATTHTQA-----------RYALPKIIKEFTIQF--PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDK 157 (306)
Q Consensus 93 ~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~--p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~ 157 (306)
+.|+||+..... ..+...++..+.++. |++++++...+..++.+.|.+|++|+++...... ....
T Consensus 55 ~~l~vg~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~ 134 (291)
T 2yjp_A 55 GVIRIGVFGDKPPFGYVDANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAANRVEYVRSGKVDLILANFTQTPERAEA 134 (291)
T ss_dssp TCEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHHHSCGGGEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT
T ss_pred CeEEEEEcCCCCCceEECCCCCEeehHHHHHHHHHHHhccCCceEEEEEccHHHHHHHHhCCCeeEEEeCCCCChHHHcc
Confidence 579999853211 235566777777665 7899999998899999999999999998532111 1122
Q ss_pred ce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHh
Q psy3760 158 LI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236 (306)
Q Consensus 158 ~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (306)
+. ..++.....+++++++.+ .-+++||.+..+... .+......+... ... .....+++...+..++.+
T Consensus 135 ~~~~~p~~~~~~~l~~~~~~~-----i~sl~dL~gk~v~~~-~g~~~~~~l~~~----~~~-~~~~~~~~~~~~~~~l~~ 203 (291)
T 2yjp_A 135 VDFADPYMKVALGVVSPKNKP-----ITDMAQLKDQTLLVN-KGTTADAFFTKS----HPE-VKLLKFDQNTETFDALKD 203 (291)
T ss_dssp EEECCCCEEECEEEEEETTSC-----CCSGGGGTTSEEEEE-TTSHHHHHHHHH----CTT-SEEEEESSHHHHHHHHHT
T ss_pred ceeccCeeecceEEEEeCCCC-----CCCHHHhCCCEEEEe-cCCcHHHHHHHh----CCC-ceEEEeCCHHHHHHHHHc
Confidence 33 356777888999998873 347899998876654 443333333322 211 234567899999999999
Q ss_pred ccce-eeeecceeccc--ccCCceeeecCCCCccceE-EEEEeCCccccHHHHHHHHHHhHHhhHHHHHhh
Q psy3760 237 RMGI-GIIASIAFDSN--RDKNLRSISASHLFGTTIS-RVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 237 g~gi-~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (306)
|..= ++.+...+... ..+.+..++... ....+ +++.+++. ....+.|-+.|.+.-+....+++
T Consensus 204 G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~--~~l~~~l~~al~~l~~~g~~~~i 270 (291)
T 2yjp_A 204 GRGVALAHDNALLWAWAKENPNFEVAIGNL--GPAEFIAPAVQKGN--ADLLNWVNGEIAAMKKDGRLKAA 270 (291)
T ss_dssp TSSSEEEEEHHHHHHHHHHCTTEEEEECCS--SSCEEECCEEETTC--HHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCccEEEecHHHHHHHHHhCCCeEEcCCcc--cCCcceEEEEeCCC--HHHHHHHHHHHHHHHhCChHHHH
Confidence 9443 34444433332 334555554322 23355 67777763 33455555555444444344444
No 70
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=98.46 E-value=2.5e-06 Score=68.92 Aligned_cols=199 Identities=14% Similarity=0.052 Sum_probs=124.2
Q ss_pred CCcEEEEecccchhhhhHHHHHHHH---HhCCCcEEEE--EeCChhHHHHHHHc-C-CeeEEEEccccC----CCCCc--
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFT---IQFPKVKLSL--LQGNPKQITEMIRN-D-QADIAIVTEILS----PSDKL-- 158 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~---~~~p~~~i~~--~~~~~~~~~~~l~~-~-~~Di~i~~~~~~----~~~~~-- 158 (306)
.++|+|.+..++ ...+..++..|. ++||++++++ ...++.++..++.+ | .+|+.+...... ...++
T Consensus 4 ~~~l~v~~~~~~-~~~~~~~~~~F~~~~~~~~gi~V~~~~~~~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~ 82 (296)
T 3cg1_A 4 EVTLIVFHAGSL-SVPFQEVEKEFSEYAERNLGIKVSFQDEASGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTD 82 (296)
T ss_dssp CEEEEEEEEGGG-HHHHHHHHHHHHHHHHHHHSCCEEEEEEEECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCS
T ss_pred ccEEEEEEccch-HHHHHHHHHHHHHHHHhCCCceEEEEeecCCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCC
Confidence 457999887664 446788999999 8899999999 88899999999988 5 699999853211 12222
Q ss_pred eeeccccceEEEEecCCCCCCC---CCCcChhhhcC---CCeEeecCCCC-cHH----HHH--------HHHHhCC-C--
Q psy3760 159 ISIPCYQWEYVIIVPLDHPLLL---LNSISLKEISN---YPLITYDLSFS-GRI----KLD--------REFSLQK-L-- 216 (306)
Q Consensus 159 ~~~~l~~~~~~~v~~~~~~l~~---~~~i~~~dl~~---~~~i~~~~~~~-~~~----~~~--------~~~~~~~-~-- 216 (306)
...++....+++++++++|... ..+.+|.||.. .++.+.++... ... .+. .+++... .
T Consensus 83 ~~~~~~~~~~vi~~~~~~~~~~~i~~~p~sw~dll~~p~~~i~~~~p~~~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (296)
T 3cg1_A 83 FYVLFATNEIVIAFTDKSRYVEEMKSNPDKWYEILAREDVRFGFSDPNQDPCGYRSLMVIKLADLYYGKEIFKELIEENT 162 (296)
T ss_dssp CCEEEEECCEEEEECTTSTTHHHHHHCGGGHHHHHTSTTCCEEEECTTTCHHHHHHHHHHHHHHHHHTSCHHHHHTTTTB
T ss_pred cceecccccEEEEEcCCCchhcccCCCCCCHHHHhcCCCcEEEeCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 3567778899999999987421 23468999642 34666655421 211 111 1121111 1
Q ss_pred -----------------ceeEEEEecCHHHHHHHHHhcc-ceeeeecceecccccCCceeeecCCC--------------
Q psy3760 217 -----------------TPYIVLETINSDIIKTYVELRM-GIGIIASIAFDSNRDKNLRSISASHL-------------- 264 (306)
Q Consensus 217 -----------------~~~~~~~~~~~~~~~~~v~~g~-gi~~~p~~~~~~~~~~~l~~~~~~~~-------------- 264 (306)
.++......+...+.+++.+|. .++++....+... .+..++++..
T Consensus 163 ~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~~~i~~~s~a~~~---~~~~~~~p~~~~~~~~~~~~~~~~ 239 (296)
T 3cg1_A 163 NIYSNGTQIYAPKEITVNPGKIVIRPKETDLLGLVESGSIDYIFIYKSVAKQH---NLSYITLPSEINLGDFSKEKFYGQ 239 (296)
T ss_dssp SCEEETTEEEECSSCCBCTTTEEEESSGGGGHHHHHHTSSSEEEEEHHHHHHT---TCEEEECCTTTSSCCGGGHHHHTT
T ss_pred ccccCccccccccccccccccceecCchHHHHHHHhCCCCCEEEEEhhHHHHc---CCCeEecChhhccccccccccccc
Confidence 0112344556667888899884 6666655443221 2222222211
Q ss_pred -------------CccceEEEEEeCCccccHHHHHHHHHHhHH
Q psy3760 265 -------------FGTTISRVIIKQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 265 -------------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 294 (306)
.......+...++......+++|+++|.+.
T Consensus 240 v~~~~p~~g~~~~~~~~~~~~~i~k~a~~~~~A~~Fi~fl~s~ 282 (296)
T 3cg1_A 240 ISITLGSTGKTIKAKPIVYGVTVLKDAPNREVAIEFLRYLLSE 282 (296)
T ss_dssp CEEEETTTCCEEECCCCEEEEEECTTCTTHHHHHHHHHHHHSH
T ss_pred eeEEecCCcccccCceeeeeEEEeCCCCCHHHHHHHHHHHhCh
Confidence 112355666777777788999999999764
No 71
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=98.45 E-value=4.9e-07 Score=65.04 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=59.7
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .|.+..|+.+++|+|++|+.|++||+. | |+.|. ...+ .||+.|+.++..+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~-G--lv~r~~~~~D~R~~~~-~lT~~G~~~~~~~~~ 113 (148)
T 3nrv_A 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK-K--YIEVNGHSEDKRTYAI-NLTEMGQELYEVASD 113 (148)
T ss_dssp CCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEC---------CCB-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEEeecCCCCcceeEe-EECHhHHHHHHHHHH
Confidence 4567889999998865 256678999999999999999999998 4 44444 4566 899999999999888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 114 ~~~~~~~ 120 (148)
T 3nrv_A 114 FAIEREK 120 (148)
T ss_dssp HTHHHHH
T ss_pred HHHHHHH
Confidence 7776544
No 72
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=98.44 E-value=1.4e-05 Score=63.98 Aligned_cols=201 Identities=6% Similarity=0.065 Sum_probs=124.6
Q ss_pred CCcEEEEecccch-----------hhhhHHHHHHHHHh----C--CCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC-
Q psy3760 92 TGNLTIATTHTQA-----------RYALPKIIKEFTIQ----F--PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS- 153 (306)
Q Consensus 92 ~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~----~--p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~- 153 (306)
.+.|+||+..... ..+...++..+.+. . |++++++...+..+++..+.+|++|+++......
T Consensus 16 ~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~ 95 (287)
T 2vha_A 16 NGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNV 95 (287)
T ss_dssp HTEEEEEECSEETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHTTSCSEECSSCBCCH
T ss_pred CCeEEEEEcCCCCCceEECCCCCcccccHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHCCCeeEEeccccCCc
Confidence 3579999864211 13445566555442 3 4699999998888999999999999997531111
Q ss_pred -CCCCce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHH
Q psy3760 154 -PSDKLI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIK 231 (306)
Q Consensus 154 -~~~~~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (306)
....+. +.++.....+++++++++. -+++||.+.++... .+......+...+...+...+ ...+++...++
T Consensus 96 ~r~~~~~~s~p~~~~~~~l~~~~~~~i-----~sl~dL~g~~v~~~-~g~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 168 (287)
T 2vha_A 96 ERQKQAAFSDTIFVVGTRLLTKKGGDI-----KDFADLKGKAVVVT-SGTTSEVLLNKLNEEQKMNMR-IISAKDHGDSF 168 (287)
T ss_dssp HHHTTCEEEEEEEEEEEEEEEETTSSC-----CSGGGGTTCEEEEE-TTSHHHHHHHHHHHHTTCCCE-EEEESSHHHHH
T ss_pred chhhcccccceeeecceEEEEECCCCC-----CCHHHcCCCEEEEe-CCCcHHHHHHHHhhccCCCce-EEEcCCHHHHH
Confidence 122344 3778888999999998753 47899998876554 454555566666665554433 44678899999
Q ss_pred HHHHhcccee-eeecceeccc-cc----CCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhh
Q psy3760 232 TYVELRMGIG-IIASIAFDSN-RD----KNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 232 ~~v~~g~gi~-~~p~~~~~~~-~~----~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (306)
.++.+|..=+ +.+...+... .. +.+..++.+ .....++++.+++ .......|-+.|.+..+....+++
T Consensus 169 ~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~--~~~l~~~l~~~l~~l~~~g~~~~i 242 (287)
T 2vha_A 169 RTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKP--QSQEAYGCMLRKD--DPQFKKLMDDTIAQVQTSGEAEKW 242 (287)
T ss_dssp HHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCC--SCEEEEEEEECTT--CHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCc--cccCceEEEEeCC--CHHHHHHHHHHHHHHHhCchHHHH
Confidence 9999995433 3443333222 21 234444432 2345777887776 234555555555554444444444
No 73
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=98.42 E-value=1.5e-05 Score=62.05 Aligned_cols=199 Identities=7% Similarity=-0.009 Sum_probs=123.2
Q ss_pred CCCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCC
Q psy3760 91 DTGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDK 157 (306)
Q Consensus 91 ~~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~ 157 (306)
..+.|+||+..... ..+...++..+.++. ++++++...+...++..|.+|++|+++...... ....
T Consensus 9 ~~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~ 87 (242)
T 3del_B 9 NSEKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKL-GKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLKE 87 (242)
T ss_dssp --CEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTSSSEECSSBBCCHHHHTT
T ss_pred cCCcEEEEeCCCCCCeeEECCCCCEEEeeHHHHHHHHHHc-CCceEEEEcCHHHHHHHHhCCCcCEEEecCcCCHHHHhc
Confidence 45789999963211 245667787777764 699999999999999999999999997421111 1233
Q ss_pred ceeeccc--cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHH
Q psy3760 158 LISIPCY--QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235 (306)
Q Consensus 158 ~~~~~l~--~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (306)
+.+.++. ....+++++++.+ .-+++||.+..+.... +... ..++... .......+++...++.++.
T Consensus 88 ~~~~p~~~~~~~~~~~~~~~~~-----i~~~~dL~g~~i~v~~-g~~~----~~~l~~~--~~~~~~~~~~~~~~~~~L~ 155 (242)
T 3del_B 88 ILMIPYYGEEIKHLVLVFKGEN-----KHPLPLTQYRSVAVQT-GTYQ----EAYLQSL--SEVHIRSFDSTLEVLMEVM 155 (242)
T ss_dssp EEEEEEEEEEESEEEEEEESCC-----SCCCCGGGSSCEEEET-TSHH----HHHHHHS--TTCCEEEESSHHHHHHHHH
T ss_pred ccceeeeecCCceEEEEeCCCC-----CCCHHHhCCCEEEEEc-CcHH----HHHHHhC--CCceEEEECCHHHHHHHHH
Confidence 4347777 7778888888832 3478899988876654 3322 2333332 1233456789999999999
Q ss_pred hccc-eeeeecceeccc--ccCCceeeecCCCC--ccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 236 LRMG-IGIIASIAFDSN--RDKNLRSISASHLF--GTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 236 ~g~g-i~~~p~~~~~~~--~~~~l~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
+|.. .++.+...+... ..+.+..++.+... ....+++..+++ .......|-+.|.+.-+....+++.
T Consensus 156 ~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~l~~~l~~~l~~l~~~g~~~~i~ 227 (242)
T 3del_B 156 HGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASD--RPALALKIEAAVQEIRKEGVLAELE 227 (242)
T ss_dssp TTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETT--CHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCC--CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9944 444444333332 33445555432211 122377877877 2445666666666655555555554
No 74
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=98.39 E-value=5.2e-07 Score=59.45 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHhc--CCHHHHHHHhCCCchH-HHHHHHHHHHH--cCceeEEecCCCccccCHhHHHHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAVRQN--FNLTEAAKALYTSQPG-VSKAIIELEEE--LSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEI 77 (306)
Q Consensus 4 ~~l~~f~~v~~~~--~s~~~aA~~l~isq~~-~s~~i~~LE~~--lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~ 77 (306)
+.+.++..+.+.+ .+++.-|+.+++|+|+ +|+.|++||+. +...--+|....+ .||+.|+.+++.+.+..+.+
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~-~LT~~G~~~~~~~~~~~~~l 93 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTL-KLTEKGRRLAECLEKCRDVL 93 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEE-EECHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEE-EECHhHHHHHHHHHHHHHHh
Confidence 4566777776653 4999999999999999 99999999987 3211222334555 89999999999998887654
No 75
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=98.39 E-value=1.4e-05 Score=61.36 Aligned_cols=200 Identities=11% Similarity=0.042 Sum_probs=123.8
Q ss_pred CcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCc-
Q psy3760 93 GNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKL- 158 (306)
Q Consensus 93 ~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~- 158 (306)
++|+||+..... ..+...++..+.++. ++++++...+..++...+.+|++|+++...... ....+
T Consensus 2 ~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~ 80 (227)
T 3tql_A 2 DTIKFATEATYPPYVYMGPSGQVEGFGADIVKAVCKQM-QAVCTISNQPWDSLIPSLKLGKFDALFGGMNITTARQKEVD 80 (227)
T ss_dssp CEEEEEECSCBTTTBEEC--CCEESHHHHHHHHHHHHT-TCEEEEEECCHHHHHHHHHHTSCSEECSSCBCCTTGGGTEE
T ss_pred ceEEEEEcCCCCCeeEECCCCCcccchHHHHHHHHHHh-CCeEEEEeCCHHHHHHHHhCCCCCEEEecCcCCHhHHhhee
Confidence 578888865211 236677888887764 899999999999999999999999997432111 12222
Q ss_pred eeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhcc
Q psy3760 159 ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRM 238 (306)
Q Consensus 159 ~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~ 238 (306)
-+.++.....+++++++.+.. -+++||.+..+..... ......+....... .....+++...++.++.+|.
T Consensus 81 ~s~p~~~~~~~l~~~~~~~~~----~~~~dL~g~~v~~~~g-~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~gr 151 (227)
T 3tql_A 81 FTDPYYTNSVSFIADKNTPLT----LSKQGLKGKIIGVQGG-TTFDSYLQDSFGNS----ITIQRYPSEEDALMDLTSGR 151 (227)
T ss_dssp ECSCSBCCEEEEEEETTSCCC----CSTTTTTTCEEEEETT-SHHHHHHHHHHGGG----SEEEEESSHHHHHHHHTTTS
T ss_pred cccceeccceEEEEeCCCCCC----CCHHHhCCCEEEEEec-ccHHHHHHHhcccc----ceEEEcCCHHHHHHHHHcCC
Confidence 245788889999999988643 3788998887766543 33333333333221 34567889999999999994
Q ss_pred c-eeeeecceeccc--ccC--Cceeee--cCCC-CccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 239 G-IGIIASIAFDSN--RDK--NLRSIS--ASHL-FGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 239 g-i~~~p~~~~~~~--~~~--~l~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
. ..+.+...+... ..+ ++..+. +... .....+++..+++. ......|-+.|.+.-+....+++.
T Consensus 152 vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~l~~~g~~~~i~ 223 (227)
T 3tql_A 152 VDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGN--QALLLKLNKALAAIKANGVYAAIV 223 (227)
T ss_dssp SSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTC--HHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred cCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCC--HHHHHHHHHHHHHHHhCChHHHHH
Confidence 4 334444333322 222 255543 2221 11235577777762 345555555555554444555554
No 76
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=98.39 E-value=2.4e-06 Score=60.66 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=50.1
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLK 81 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~ 81 (306)
|++..|+.+++|+|++|+.|++||+. | |+.|.++++ .||+.|+.+...+......++...
T Consensus 33 s~~ela~~l~is~~tv~~~l~~Le~~-G--li~r~~~~~-~Lt~~g~~~~~~~~~~~~~~~~~~ 92 (139)
T 2x4h_A 33 KINRIAKDLKIAPSSVFEEVSHLEEK-G--LVKKKEDGV-WITNNGTRSINYLIKAHRVIEILL 92 (139)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEETTEE-EECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHC-C--CEEecCCeE-EEChhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998 5 677777777 799999998877766555544444
No 77
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=98.39 E-value=9.5e-06 Score=65.02 Aligned_cols=196 Identities=14% Similarity=0.099 Sum_probs=121.0
Q ss_pred CCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEcccc-CC--CCC
Q psy3760 92 TGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEIL-SP--SDK 157 (306)
Q Consensus 92 ~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~-~~--~~~ 157 (306)
.+.|+||+..... ..+...++..+.++. ++++++...+...+.+.|.+|++|+++..... .. ...
T Consensus 56 ~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-G~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~t~~r~~~ 134 (283)
T 2yln_A 56 KGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKL-GVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQAT 134 (283)
T ss_dssp TCEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHHTSCSEECSSCCCCSHHHHHH
T ss_pred CCeEEEEECCCCCCeeEECCCCCEeeehHHHHHHHHHHc-CCceEEEECCHHHHHHHHHCCCcCEEEecCccCChhhhcc
Confidence 4689999975221 245567777777765 88999999889999999999999999853221 11 112
Q ss_pred ce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHh
Q psy3760 158 LI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236 (306)
Q Consensus 158 ~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (306)
+. ..++......++++++.+ .-+++||.+..+.. ..+... ..++...+. ....+++...++.++..
T Consensus 135 ~~~~~p~~~~~~~l~~~~~~~-----i~s~~dL~G~~v~v-~~g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~~ 201 (283)
T 2yln_A 135 FDKSEPYSWSGAVLVAHNDSN-----IKSIADIKGVKTAQ-SLTSNY----GEKAKAAGA---QLVPVDGLAQSLTLIEQ 201 (283)
T ss_dssp EEECSCSEEECEEEEEETTCS-----CCSGGGCTTSEEEE-CTTSHH----HHHHHHTTC---EEEECSSHHHHHHHHHT
T ss_pred eEeccCeeeecEEEEEECCCC-----CCCHHHhCCCEEEE-ecCchH----HHHHHHcCC---eEEEeCCHHHHHHHHHc
Confidence 22 336777888999999876 34789998877665 333322 334444453 23466788999999999
Q ss_pred ccc-eeeeecceeccc--ccC--Cceeee-cCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 237 RMG-IGIIASIAFDSN--RDK--NLRSIS-ASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 237 g~g-i~~~p~~~~~~~--~~~--~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
|.. .++.+...+... ..+ .+..++ ... .....++++.+++. ......|-+.|.+..+....+++.
T Consensus 202 g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~i~~~k~~--~~l~~~i~~al~~l~~~g~~~~i~ 272 (283)
T 2yln_A 202 KRADATLNDELAVLDYLKKNPNAGVKIVWSAPA-DEKVGSGLIVNKGN--DEAVAKFSTAINELKADGTLKKLG 272 (283)
T ss_dssp TSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCG-GGCEEECCEEESSC--HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCCEEEecHHHHHHHHHhCCCCcEEEccCccc-CCcccEEEEEeCCC--HHHHHHHHHHHHHHHHCCcHHHHH
Confidence 944 444444433322 122 255555 322 11447778888773 334555555555444444444443
No 78
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=98.38 E-value=9.7e-06 Score=63.23 Aligned_cols=205 Identities=13% Similarity=0.076 Sum_probs=128.7
Q ss_pred CCCcEEEEecccc----------hhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCC--CCCc
Q psy3760 91 DTGNLTIATTHTQ----------ARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSP--SDKL 158 (306)
Q Consensus 91 ~~~~l~I~~~~~~----------~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~--~~~~ 158 (306)
..+.|+||+.... ...+...++..+.++..++++++...+...++..|.+|++|+++....... ...+
T Consensus 6 ~~~~l~v~~~~~~~P~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~ 85 (246)
T 4eq9_A 6 SKKEIIVATNGSPRPFIYEENGELTGYEIEVVRAIFKDSDKYDVKFEKTEWSGVFAGLDADRYNMAVNNLSYTKERAEKY 85 (246)
T ss_dssp -CEEEEEEECCCSTTTSEEETTEEESHHHHHHHHHHTTCSSEEEEEEECCHHHHHHHHHTTSCSEECSSCCCCHHHHHHE
T ss_pred CCCEEEEEeCCCcCCeEEcCCCCCcccHHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhCCCcCEEecccccChhhhhce
Confidence 4578999997421 135677888888887644999999999999999999999999885311111 1122
Q ss_pred -eeeccccceEEEEecC-CCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCce-eEEEEecCHHHHHHHHH
Q psy3760 159 -ISIPCYQWEYVIIVPL-DHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTP-YIVLETINSDIIKTYVE 235 (306)
Q Consensus 159 -~~~~l~~~~~~~v~~~-~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~ 235 (306)
-+.++.....++++++ +.+ .-+++||.+..+... .+......+..+....+... .+.+...+...++.++.
T Consensus 86 ~~s~p~~~~~~~~~~~~~~~~-----i~~~~dL~g~~i~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 159 (246)
T 4eq9_A 86 LYAAPIAQNPNVLVVKKDDSS-----IKSLDDIGGKSTEVV-QATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLS 159 (246)
T ss_dssp EECCCCEECCEEEEEETTCCS-----CSSGGGCTTCEEEEC-TTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHH
T ss_pred eeccceecCceEEEEECCCCC-----CCCHHHhCCCEEEEe-cCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHH
Confidence 2467888899999998 443 347899988877654 44444555556555555432 33334468999999999
Q ss_pred hccc-eeeeecceeccc----ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 236 LRMG-IGIIASIAFDSN----RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 236 ~g~g-i~~~p~~~~~~~----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
+|.. ..+.....+... ...++........ ....++++.+++. ......|-+.|++.-+....+++.
T Consensus 160 ~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~--~~l~~~ln~~l~~l~~~g~~~~i~ 230 (246)
T 4eq9_A 160 DGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSD-QQPYVYPLLAQGQ--DELKSFVDKRIKELYKDGTLEKLS 230 (246)
T ss_dssp TTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCS-SCCEECCEEETTC--HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cCCceEEEecHHHHHHHHHhCCCCCceEecCcCC-CCCcEEEEEcCCC--HHHHHHHHHHHHHHHhCCcHHHHH
Confidence 9954 344444333322 2234666664432 2224677777764 345555555555544444555544
No 79
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=98.31 E-value=2.9e-05 Score=63.53 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=126.4
Q ss_pred CCCCcEEEEecccchhh-hhHHHHHHHHHhC----CCcEEEEEe-CChhHHHHHHHcCCeeEEEEcccc-----------
Q psy3760 90 YDTGNLTIATTHTQARY-ALPKIIKEFTIQF----PKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEIL----------- 152 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~~-~l~~~l~~~~~~~----p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~----------- 152 (306)
...+.|+|++...-+.+ .+...+.++..+. +++++.+.. .++...+..+.+|++|++++....
T Consensus 29 ~~~~~i~i~~g~~gG~~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f 108 (327)
T 4ddd_A 29 LNREYILIGTGSMTGVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFY 108 (327)
T ss_dssp CCCEEEEEECCCTTSSHHHHHHHHHHHHHHHHGGGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGG
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccCCCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcc
Confidence 34568999998654443 5777777776665 899999988 466788899999999999975221
Q ss_pred C---CCCCce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeE--EEEecC
Q psy3760 153 S---PSDKLI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYI--VLETIN 226 (306)
Q Consensus 153 ~---~~~~~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 226 (306)
. ...++. ...++...++++++++.+. -+++||.+.++.....+...+.....+++..|+.+.. .+...+
T Consensus 109 ~~~~~~~d~~~v~~~~~~~~~lvv~~ds~i-----~sl~DL~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g 183 (327)
T 4ddd_A 109 EKMLPMDNLRMLASLHKEYLTIVVKKSSNI-----SVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELK 183 (327)
T ss_dssp TTSCCCTTEEEEEEEEEEEEEEEEETTSSC-----CSGGGGTTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCC
T ss_pred cccCCCcchhehhccCCccEEEEEECCCCC-----CCHHHhCCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCC
Confidence 1 123444 3456778899999998763 3789998877665455555555667778888887631 234456
Q ss_pred HHHHHHHHHhcc-ceeee----ecceeccc-ccCCceeeecCCC---------------------C--------ccceEE
Q psy3760 227 SDIIKTYVELRM-GIGII----ASIAFDSN-RDKNLRSISASHL---------------------F--------GTTISR 271 (306)
Q Consensus 227 ~~~~~~~v~~g~-gi~~~----p~~~~~~~-~~~~l~~~~~~~~---------------------~--------~~~~~~ 271 (306)
...+...+.+|. -..+. |...+..+ ..++++.+++... . ......
T Consensus 184 ~~~a~~aL~~G~vDa~~~~~~~p~~~~~~~~~~g~lr~L~v~~~~r~~~~p~~Pt~~~~~ip~g~~~~~~dv~t~~~~~~ 263 (327)
T 4ddd_A 184 SSEQAQALCDNKIDVMVDVIGHPNASIQEASATCDIKFIPLDDRLIDDLHAKYPYYQKDIISGGLYNDSPDIQTVSVKAS 263 (327)
T ss_dssp HHHHHHHHHTTSCSBEEEEECSSCHHHHHHHHHSCEEECCCCHHHHHHHHHHCTTCEEEEECSCSSSSCCCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEccCCCcHHHHHHHhcCCeEEEeCCHHHHHHHHHhCCCceEEEeCCCCCCCCCCcceeeeeeE
Confidence 666777777772 22222 11122233 4566666544320 1 011223
Q ss_pred EEEeCCccccHHHHHHHHHHhHHh
Q psy3760 272 VIIKQGTYLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~l~~~~ 295 (306)
++.+++.+ .+.+.++.+.+.+.+
T Consensus 264 l~ap~~~p-~~vv~~l~~a~~e~~ 286 (327)
T 4ddd_A 264 LVTTTELS-NDLAYKIVKSIATHL 286 (327)
T ss_dssp EEEETTSC-HHHHHHHHHHHHHTH
T ss_pred EEEcCCCC-HHHHHHHHHHHHhCH
Confidence 55577764 667777777776654
No 80
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=98.31 E-value=2e-06 Score=62.85 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=59.0
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .+.+..|+.+++|++++|+.|++||+. -|+.|.. ..+ .||+.|+.++..+..
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~---glv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~ 122 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLER---GFIRRETHGDDRRRSML-ALSPAGRQVYETVAP 122 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEC---------CCC-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEeeecCCCCCCeeEE-EECHHHHHHHHHHHH
Confidence 3567788888888644 266779999999999999999999998 5666643 456 799999999999888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 123 ~~~~~~~ 129 (162)
T 2fa5_A 123 LVNEMEQ 129 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765543
No 81
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=98.31 E-value=3.6e-05 Score=60.94 Aligned_cols=202 Identities=9% Similarity=-0.027 Sum_probs=124.5
Q ss_pred CCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCc
Q psy3760 92 TGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKL 158 (306)
Q Consensus 92 ~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~ 158 (306)
.+.|+||+..... ..+...++..+.+.. ++++++...+..+++..|.+|++|+++...... ....+
T Consensus 20 ~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~ 98 (268)
T 3hv1_A 20 EKKIKIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKLY-GIDVEWQAIDWDMKETELKNGTIDLIWNGYSVTDERKQSA 98 (268)
T ss_dssp HTEEEEEECTEETTTEEECTTSCEECHHHHHHHHHHHTT-TCEEEEEECCGGGHHHHHHHTSCSEECSSCBCCHHHHTTC
T ss_pred CCcEEEEECCCCCCceEECCCCCEEEehHHHHHHHHHHh-CCcEEEEECCHHHHHHHHHCCCCCEEEecCccCHHHHhcC
Confidence 4689999974321 246677888887764 899999999999999999999999988422111 11222
Q ss_pred -eeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhC--CCceeEEEEecCHHHHHHHHH
Q psy3760 159 -ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQ--KLTPYIVLETINSDIIKTYVE 235 (306)
Q Consensus 159 -~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~ 235 (306)
-+.++.....+++++++.+ .-+++||.+..+...... .....+....... .........+++...++.++.
T Consensus 99 ~fs~p~~~~~~~~~~~~~~~-----i~~~~dL~g~~i~v~~g~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 172 (268)
T 3hv1_A 99 DFTEPYMVNEQVLVTKKSSG-----IDSVAGMAGKTLGAQAGS-SGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLN 172 (268)
T ss_dssp EECCCCEEECEEEEEEGGGC-----CCSSGGGTTCCEEEETTC-HHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHH
T ss_pred cCcHHHeeCceEEEEECCCC-----CCCHHHhCCCEEEEEeCC-chHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHH
Confidence 2457888889999988763 347899998887776532 2222222211111 122234667889999999999
Q ss_pred hccc-eeeeecceeccc-c-c---CCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 236 LRMG-IGIIASIAFDSN-R-D---KNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 236 ~g~g-i~~~p~~~~~~~-~-~---~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
+|.. ..+.....+... . . +.+..++.. ....+++++.+++. ......|-+.|.+.-+....+++.
T Consensus 173 ~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~~--~~l~~~ln~~l~~l~~~g~~~~i~ 243 (268)
T 3hv1_A 173 SGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAG--YEGESFAVGARKVD--KTLIKKINQGFETLYKNGEFQKIS 243 (268)
T ss_dssp HTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECS--SCCEEECCEECTTC--HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCCCCEEEeCHHHHHHHHHhCCCCCceEECCCC--CCCCcEEEEEcCCC--HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9954 344444333322 1 2 345555443 23456777777652 344555555555544444455543
No 82
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=98.29 E-value=1.1e-07 Score=58.21 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCcccc--CHhHHHHHHHHHH
Q psy3760 7 RFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGL--TKPGQAILRSIEI 72 (306)
Q Consensus 7 ~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~l--T~~G~~l~~~a~~ 72 (306)
+++..+.+.| |++++|+.+|+|||+||+.+ |.++++ .+ |+.|+.++++++.
T Consensus 5 ~l~~~~~~~g-s~~~~A~~lgis~~~vs~~~-------------~~~~~~-~l~~t~~G~~~~~~~~~ 57 (67)
T 2pij_A 5 PLSKYLEEHG-TQSALAAALGVNQSAISQMV-------------RAGRSI-EITLYEDGRVEANEIRP 57 (67)
T ss_dssp EHHHHHHHTC-CHHHHHHHHTSCHHHHHHHH-------------HTTCCE-EEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHcC-CHHHHHHHHCcCHHHHHHHH-------------cCCCCC-CeEEccCceEehHhhcC
Confidence 4567889999 99999999999999999998 567777 78 9999877665443
No 83
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=98.29 E-value=3.5e-07 Score=54.72 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=24.1
Q ss_pred HHHHHhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 10 REAVRQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 10 ~~v~~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
..+.+.+ |++++|+.||+|||+||+.+
T Consensus 8 k~l~~~~-sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 8 KKFVEDK-NQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp HHHHTTS-CHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHc-CHHHHHHHhCCCHHHHHHHH
Confidence 3457778 99999999999999999988
No 84
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=98.28 E-value=1.5e-05 Score=61.84 Aligned_cols=200 Identities=12% Similarity=0.068 Sum_probs=124.5
Q ss_pred CCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCc
Q psy3760 92 TGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKL 158 (306)
Q Consensus 92 ~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~ 158 (306)
.+.|+||+..... ..+...++..+.+.. ++++++...+..+++..|.+|++|+++...... ....+
T Consensus 14 ~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~ 92 (239)
T 3kbr_A 14 SGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESL-GAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQA 92 (239)
T ss_dssp HTEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHT-TCEEEEEECCTTTHHHHHHTTCCSEECSSCBCCHHHHTTC
T ss_pred CCeEEEEECCCCCCeeEECCCCCEEeehHHHHHHHHHHH-CCceEEEEeCHHHHHHHHHCCCcCEEEeCCcCCHHHcCcc
Confidence 4689999963211 146677888888775 899999999999999999999999996432111 11223
Q ss_pred -eeeccccceEEEEecCCCCCCCCCCcChhhhc--CCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHH
Q psy3760 159 -ISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS--NYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235 (306)
Q Consensus 159 -~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (306)
-+.++.....+++++++.+. ..-+++||. +..+.. ..+.... .++.... .......+++...++.++.
T Consensus 93 ~fs~p~~~~~~~~~~~~~~~~---~i~~~~dL~~~g~~v~~-~~g~~~~----~~l~~~~-~~~~~~~~~~~~~~~~~l~ 163 (239)
T 3kbr_A 93 YFSIPYLRDGKTPITLCSEEA---RFQTLEQIDQPGVTAIV-NPGGTNE----KFARANL-KKARILVHPDNVTIFQQIV 163 (239)
T ss_dssp EECSCSEEECEEEEEEGGGGG---GGSSHHHHSSTTCEEEE-CTTSHHH----HHHHHHC-SSSEEEECCCTTTHHHHHH
T ss_pred ccchHHhccCcEEEEECCccc---ccCCHHHhcCCCcEEEE-cCCCcHH----HHHHHhC-CCCceEEeCCHHHHHHHHH
Confidence 24578888889999887531 234789998 444443 3443332 2333321 1233456778889999999
Q ss_pred hccc-eeeeecceeccc--ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 236 LRMG-IGIIASIAFDSN--RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 236 ~g~g-i~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
+|.. ..+.....+... ..+++..+....+....+++++.++ .......|-+.|.+..+....+++.
T Consensus 164 ~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~~ln~~l~~l~~~g~~~~i~ 232 (239)
T 3kbr_A 164 DGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR---DEAFKRYVDQWLHIAEQSGLLRQRM 232 (239)
T ss_dssp TTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS---CHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC---CHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 9954 344444444333 3455666554443445577777777 3555666666666655555555554
No 85
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=98.26 E-value=3e-06 Score=60.15 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=58.9
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeE----EecCCCccccCHhHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIF----IRHGKRIRGLTKPGQAILRSIEIIMQ 75 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf----~R~~~~~~~lT~~G~~l~~~a~~il~ 75 (306)
|+..++.++..+.+.+ .|.+..|+.+++|+|++|+.|++||+.=-+.-. +|....+ .||+.|+.++..+.....
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~~~~ 114 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLV-SLSPAGRAELEAGLAAAR 114 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEE-EECHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeee-EECHhHHHHHHHHHHHHH
Confidence 4567888888887654 267788999999999999999999988333332 1223345 799999999999888776
Q ss_pred HHHH
Q psy3760 76 EIEG 79 (306)
Q Consensus 76 ~~~~ 79 (306)
.+..
T Consensus 115 ~~~~ 118 (140)
T 2nnn_A 115 EINR 118 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 86
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=98.26 E-value=7.2e-05 Score=58.27 Aligned_cols=199 Identities=13% Similarity=0.010 Sum_probs=120.2
Q ss_pred CCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCc
Q psy3760 92 TGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKL 158 (306)
Q Consensus 92 ~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~ 158 (306)
.+.|+||+..... ..+...++..+.+.. ++++++...+...++..|.+|++|+++...... ....+
T Consensus 4 ~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~ 82 (245)
T 3k4u_A 4 RGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAM-GVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRV 82 (245)
T ss_dssp CSEEEEEECTTSTTTCEEETTTEEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTS
T ss_pred CCeEEEEECCCcCCeeEECCCCCCccchHHHHHHHHHHh-CCeEEEEEccHHHHHHHHhCCCcCEEEecCcCCHHHHhhc
Confidence 5689999982211 245567777777664 789999999999999999999999987421111 11222
Q ss_pred -eeeccccceEEEEecCCCCCCCCCCcChhhhc--CCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHH
Q psy3760 159 -ISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS--NYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235 (306)
Q Consensus 159 -~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (306)
-+.++.....+++++++.+ ...-+++||. +..+.... +.... ..+.... .......+++...++.++.
T Consensus 83 ~~s~p~~~~~~~~~~~~~~~---~~i~~~~dL~~~g~~i~v~~-g~~~~----~~l~~~~-~~~~~~~~~~~~~~~~~L~ 153 (245)
T 3k4u_A 83 NFVEPYIVVGQSLLVKKGLE---KGVKSYKDLDKPELTLVTKF-GVSAE----YAAKRLF-KNAKLKTYDTEAEAVQEVL 153 (245)
T ss_dssp EECSCSEEECEEEEEETTTT---TTCCSGGGGCCSSCEEEEET-TSHHH----HHHHHHC-SSSEEEEESSHHHHHHHHH
T ss_pred CcchhhheeceEEEEECCcc---cccCCHHHhccCCcEEEEeC-CcHHH----HHHHhhC-CcCCEEEeCCHHHHHHHHH
Confidence 3457888899999998853 2234789998 55555543 33332 2333221 1234557789999999999
Q ss_pred hccceee-eecceeccc----ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 236 LRMGIGI-IASIAFDSN----RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 236 ~g~gi~~-~p~~~~~~~----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
+|..=++ .....+... ....+...+.+ ....+++++.+++. ......|-+.|.+.-+....+++.
T Consensus 154 ~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~--~~l~~~ln~~l~~l~~~g~~~~i~ 223 (245)
T 3k4u_A 154 NGKADMFIFDLPFNVAFMAQKGQGYLVHLDTS--LTYEPLGWAIKKGD--PDFLNWLNHFLAQIKHDGSYDELY 223 (245)
T ss_dssp SSSSEEEEEEHHHHHHHHHHTTTTTEEEECCC--CSCEEECCEECTTC--HHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred cCCCcEEEEcHHHHHHHHhcCCccceeecCCC--cccccEEEEEcCCC--HHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9955444 333333222 22334433332 33557788888763 334555555555544444455443
No 87
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=98.26 E-value=3.3e-05 Score=60.70 Aligned_cols=200 Identities=11% Similarity=0.027 Sum_probs=120.7
Q ss_pred CcEEEEecccch----------hhhhHHHHHHHHHhCCCcE-EEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCce
Q psy3760 93 GNLTIATTHTQA----------RYALPKIIKEFTIQFPKVK-LSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKLI 159 (306)
Q Consensus 93 ~~l~I~~~~~~~----------~~~l~~~l~~~~~~~p~~~-i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~~ 159 (306)
+.|+||+..... ..+...++..+.++. ++. +++...+...++..+.+|++|+++...... ....+.
T Consensus 13 ~~l~v~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~ 91 (257)
T 2q88_A 13 GFARIAIANEPPFTAVGADGKVSGAAPDVAREIFKRL-GVADVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVA 91 (257)
T ss_dssp TEEEEEECCCTTTCEECTTCCEESHHHHHHHHHHHHT-TCCEEEEEECCGGGHHHHHHTTSCSEECSCCBCCHHHHTTSE
T ss_pred CeEEEEcCCCCCeeEECCCCCcccccHHHHHHHHHHc-CCCeeeEEeCCHHHHHHHHHCCCcCEEEecccCCHHHHhccc
Confidence 579999874321 235567888887765 676 888888889999999999999997321111 112232
Q ss_pred -eeccccceEEEEecCCCCCCCCCCcChhhhc---CCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHH
Q psy3760 160 -SIPCYQWEYVIIVPLDHPLLLLNSISLKEIS---NYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235 (306)
Q Consensus 160 -~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (306)
+.++.....+++++++.+.. .-+++||. +..+.... +.. ....+...+........+++...++.++.
T Consensus 92 ~s~p~~~~~~~~~~~~~~~~~---i~~~~dL~~~~g~~i~~~~-g~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 163 (257)
T 2q88_A 92 YSQPILCDAEAFALKKGNPLG---LKSYKDIADNPDAKIGAPG-GGT----EEKLALEAGVPRDRVIVVPDGQSGLKMLQ 163 (257)
T ss_dssp ECSCCCEECEEEEEETTCTTC---CCBHHHHHHCTTCCEEECT-TSH----HHHHHHHTTCCGGGEEECSSHHHHHHHHH
T ss_pred cccchhcCceEEEEECCCccC---CCCHHHHhccCCceEEEEC-Ccc----cHHHHHhcCCCCceEEEcCCHHHHHHHHH
Confidence 45788888999999987521 24789999 77776543 322 23455666654334567889999999999
Q ss_pred hccce-eeeecceeccc--ccC--Cceee-ecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 236 LRMGI-GIIASIAFDSN--RDK--NLRSI-SASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 236 ~g~gi-~~~p~~~~~~~--~~~--~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
+|..= .+.....+..+ ..+ .+..+ |+.. .+...++++.+++ .......|-+.|.+..+....+++.
T Consensus 164 ~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~--~~~l~~~l~~~l~~~~~~g~~~~i~ 235 (257)
T 2q88_A 164 DGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEG-APVYCDGAAFRKG--DEALRDAFDVELAKLKESGEFAKII 235 (257)
T ss_dssp HTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBT-CCCEEBCCEECGG--GHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCCCcEEEcCHHHHHHHHHhCCCcceeeecccCC-ccccceEEEEcCC--CHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 99443 33443333222 112 23332 2222 1223555666665 2445555555555544444555544
No 88
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=98.25 E-value=0.00025 Score=56.13 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=122.9
Q ss_pred CCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEe-CChhHHHHHHHcCCeeEEEEcccc-CCCCCc
Q psy3760 92 TGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEIL-SPSDKL 158 (306)
Q Consensus 92 ~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~-~~~~~~ 158 (306)
.+.|+||+..... ..+...++..+.++. ++++++.. .+..++.+.+.+|++|++...... .....+
T Consensus 31 ~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~~l~~G~~D~~~~~~~t~~r~~~~ 109 (267)
T 3mpk_A 31 HPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRT-GLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSARESFL 109 (267)
T ss_dssp CSEEEEEEETEETTTEECCTTCCCBSHHHHHHHHHHHHH-CCEEEEEEESSHHHHHHHHHHTSCSEEEEEECCGGGTTTE
T ss_pred CCcEEEEeCCCCCCeEEECCCCcEeeeHHHHHHHHHHHH-CCeEEEEecCCHHHHHHHHHCCCccEEecccCChhhhcce
Confidence 4689999976321 245667777777764 78999985 468899999999999997643211 122333
Q ss_pred e-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhc
Q psy3760 159 I-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELR 237 (306)
Q Consensus 159 ~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 237 (306)
. +.++.....+++++++.+. .-+++||.+..+..... ..... ++..... ......+++...++.++.+|
T Consensus 110 ~fs~p~~~~~~~l~~~~~~~~----i~~~~dL~g~~i~v~~g-~~~~~----~l~~~~~-~~~~~~~~~~~~~l~~L~~G 179 (267)
T 3mpk_A 110 SFSRPYVRNGMVIVTRQDPDA----PVDADHLDGRTVALVRN-SAAIP----LLQRRYP-QAKVVTADNPSEAMLMVANG 179 (267)
T ss_dssp EECSCSEEECEEEEEESSTTS----CSSGGGCTTCEEEEETT-CTHHH----HHHHHCT-TSEEEEESSHHHHHHHHHHT
T ss_pred EechhhccCceEEEEECCCCC----CCCHHHHCCCEEEEeCC-chhHH----HHHHhCC-CcEEEEeCCHHHHHHHHHcC
Confidence 3 4678888999999988542 35789999887776654 33323 3332221 23355678999999999999
Q ss_pred cc-eeeeecceeccc----ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhhc
Q psy3760 238 MG-IGIIASIAFDSN----RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKILN 305 (306)
Q Consensus 238 ~g-i~~~p~~~~~~~----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 305 (306)
.. .++.+...+... ..+.+...+... .....++++.+++. ......|-+.|.+ +.+...+++.+
T Consensus 180 rvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~k~~--~~l~~~ln~~l~~-l~~~~~~~i~~ 248 (267)
T 3mpk_A 180 QADAVVQTQISASYYVNRYFAGKLRIASALD-LPPAEIALATTRGQ--TELMSILNKALYS-ISNDELASIIS 248 (267)
T ss_dssp SCSEEEEEHHHHHHHHHHHCTTTEEEEEECS-SCCEEEEEEEETTC--HHHHHHHHHHHHT-SCHHHHHHHHH
T ss_pred CCCEEEecHHHHHHHHHhcCCCceEEEeccC-CCceeEEEEEcCCC--HHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 44 444444333222 134566665533 23457788888762 2344444444443 33334655543
No 89
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=98.24 E-value=6.9e-06 Score=58.48 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=48.6
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-CCccccCHhHHHHHHHHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-KRIRGLTKPGQAILRSIEIIMQEIEGLK 81 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-~~~~~lT~~G~~l~~~a~~il~~~~~~~ 81 (306)
+.+..|+.+++|+|++|+.|++||+. -|+.|.+ +++ .||+.|..++..+......++.+.
T Consensus 24 ~~~ela~~l~vs~~tvs~~l~~Le~~---Glv~r~~~~~~-~LT~~g~~~~~~~~~~~~~~~~~l 84 (142)
T 1on2_A 24 RVSDIAEALAVHPSSVTKMVQKLDKD---EYLIYEKYRGL-VLTSKGKKIGKRLVYRHELLEQFL 84 (142)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT---TSEEEETTTEE-EECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHC---CCEEEeeCceE-EEchhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999983 4556554 556 899999999988777655555544
No 90
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=98.24 E-value=6.3e-05 Score=59.36 Aligned_cols=200 Identities=8% Similarity=-0.018 Sum_probs=120.7
Q ss_pred CCCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCC
Q psy3760 91 DTGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDK 157 (306)
Q Consensus 91 ~~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~ 157 (306)
..+.|++|+..... ..+...++..+.++. ++++++...+..+..+.+.+|++|+++...... ....
T Consensus 29 ~~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~ 107 (268)
T 3qax_A 29 RNRIWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEKL-GKQLEVREFAFDALILNLKKHRIDAILAGMSITPSRQKE 107 (268)
T ss_dssp --CEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHHTSSSEECSCCBCCHHHHTT
T ss_pred cCCeEEEEECCCCCCceEECCCCCEEEEEHHHHHHHHHHh-CCeEEEEecCHHHHHHHHhCCCccEEeecCccCHhHhcc
Confidence 45689999974321 234566777776664 689999988999999999999999997421111 1223
Q ss_pred ceeeccc--cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHH
Q psy3760 158 LISIPCY--QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235 (306)
Q Consensus 158 ~~~~~l~--~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (306)
+...++. ....+++++++.. ..-+++||.+..+.... +... ...+... .......+++...+..++.
T Consensus 108 ~~~~p~~~~~~~~~~~~~~~~~----~i~~~~dL~g~~i~~~~-g~~~----~~~l~~~--~~~~~~~~~~~~~~~~~l~ 176 (268)
T 3qax_A 108 IALLPYYGDEVQELMVVSKRSL----ETPVLPLTQYSSVAVQT-GTYQ----EHYLLSQ--PGICVRSFDSTLEVIMEVR 176 (268)
T ss_dssp SEEEEEECCCBCEEEEEEETTS----CSCCCCGGGSSCEEEET-TSHH----HHHHHTS--TTCCEEEESCHHHHHHHHH
T ss_pred eeeecceecccceEEEEECCCC----CCCCHHHhCCCEEEEec-CcHH----HHHHHhC--CCceEEecCCHHHHHHHHH
Confidence 3337777 7788889888752 23478999998877654 3222 3333332 1223446789999999999
Q ss_pred hccce-eeeecceeccc--ccCCceeeecCCC--CccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 236 LRMGI-GIIASIAFDSN--RDKNLRSISASHL--FGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 236 ~g~gi-~~~p~~~~~~~--~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
+|..= .+.....+... ..+.+..++.+.. .....+++..+++. ......|-+.+.+..+....+++.
T Consensus 177 ~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~l~~~l~~~l~~l~~~g~~~~i~ 248 (268)
T 3qax_A 177 YGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDR--PEEIQTIQQAITDLKSEGVIQSLT 248 (268)
T ss_dssp TTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTC--HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCCC--HHHHHHHHHHHHHHHHCCcHHHHH
Confidence 99443 33443333322 3445555542221 11223788888762 345555555555554444555443
No 91
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=98.24 E-value=7.3e-06 Score=54.42 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=49.1
Q ss_pred hhHHHHHHHH--HhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEe---cC--CCccccCHhHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAV--RQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIR---HG--KRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 4 ~~l~~f~~v~--~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R---~~--~~~~~lT~~G~~l~~~a~~il 74 (306)
.+++++..+. ... |++..|+.+++|+|++|++|++||+. |.--..+ ++ ..+ .+|+.|...+......+
T Consensus 17 ~~~~iL~~L~~~~~~-~~~ela~~l~is~~tvs~~l~~L~~~-gli~~~~~~~~~r~~~~-~lt~~g~~~~~~~~~~~ 91 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKA-PFSQIQKVLDLTPGNLDSHIRVLERN-GLVKTYKVIADRPRTVV-EITDFGMEEAKRFLSSL 91 (100)
T ss_dssp HHHHHHHHHHHHSEE-EHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEEECSSSCEEEE-EECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCc-CHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEecCCCcceEEE-EECHHHHHHHHHHHHHH
Confidence 4566676665 445 89999999999999999999999998 4433333 22 234 89999987665544433
No 92
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=98.22 E-value=4.7e-06 Score=59.46 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=59.4
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-----CCCccccCHhHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-----GKRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-----~~~~~~lT~~G~~l~~~a~~il 74 (306)
++..++.++..+.+.+ -|++..|+.+++|+|++|+.|++||+. |.--..++ ...+ .||+.|+.++..+....
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~-gli~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~~~ 104 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQ-GFIYRQEDASNKKIKRI-YATEKGKNVYPIIVREN 104 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEE-EECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHC-CCEEeecCCCCCceeee-EEChhHHHHHHHHHHHH
Confidence 4567888888888754 278999999999999999999999998 44333332 1225 79999999999888877
Q ss_pred HHHHH
Q psy3760 75 QEIEG 79 (306)
Q Consensus 75 ~~~~~ 79 (306)
..+..
T Consensus 105 ~~~~~ 109 (144)
T 1lj9_A 105 QHSNQ 109 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 93
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=98.20 E-value=2.4e-05 Score=62.90 Aligned_cols=196 Identities=11% Similarity=0.100 Sum_probs=118.1
Q ss_pred CcEEEEecccc-----------hhhhhHHHHHHHHHhC--CCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCC
Q psy3760 93 GNLTIATTHTQ-----------ARYALPKIIKEFTIQF--PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDK 157 (306)
Q Consensus 93 ~~l~I~~~~~~-----------~~~~l~~~l~~~~~~~--p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~ 157 (306)
+.|+||+.... ...+...++..+.++. |++++++...+..++.+.+.+|++|+++...... ....
T Consensus 44 ~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~ 123 (292)
T 1xt8_A 44 GVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQ 123 (292)
T ss_dssp SSEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT
T ss_pred CeEEEEECCCCCCeeEECCCCCEeeEhHHHHHHHHHHhccCCceEEEEEcCHHHHHHHHhCCCeeEEeecCCCCcchhcc
Confidence 57999985321 1345567777777765 6899999998889999999999999997532111 1123
Q ss_pred ce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHh
Q psy3760 158 LI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236 (306)
Q Consensus 158 ~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (306)
+. +.++.....+++++++.+ .-+++||.+..+... .+......+.+ ..... ....+++...+..++.+
T Consensus 124 ~~~s~p~~~~~~~~~~~~~~~-----i~~~~dL~g~~i~~~-~g~~~~~~l~~----~~~~~-~~~~~~~~~~~~~~L~~ 192 (292)
T 1xt8_A 124 VDFCSPYMKVALGVAVPKDSN-----ITSVEDLKDKTLLLN-KGTTADAYFTQ----NYPNI-KTLKYDQNTETFAALMD 192 (292)
T ss_dssp EEECCCCEEEEEEEEEETTCC-----CCSSGGGTTSEEEEE-TTSHHHHHHHH----HCTTS-EEEEESSHHHHHHHHHT
T ss_pred eeeeccceecceEEEEECCCC-----CCCHHHhCCCEEEEe-CCCcHHHHHHH----hCCCc-eEEEcCCHHHHHHHHHc
Confidence 33 357888889999998873 347899988876654 34333333332 22122 34567899999999999
Q ss_pred ccceee-eecceeccc--ccCCceeeecCCCCccceE-EEEEeCCccccHHHHHHHHHHhHHhhHHHHHhh
Q psy3760 237 RMGIGI-IASIAFDSN--RDKNLRSISASHLFGTTIS-RVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 237 g~gi~~-~p~~~~~~~--~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (306)
|..=++ ......... ..+++..++.. ....++ +++.+++. ......+-+.|.+.-+....+++
T Consensus 193 G~vDa~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~k~~--~~l~~~l~~~l~~l~~~g~~~~i 259 (292)
T 1xt8_A 193 KRGDALSHDNTLLFAWVKDHPDFKMGIKE--LGNKDVIAPAVKKGD--KELKEFIDNLIIKLGQEQFFHKA 259 (292)
T ss_dssp TSSSEEEEEHHHHHHHHHHCTTEEEEEEE--EEEEEEECCEEETTC--HHHHHHHHHHHHHHHTTTHHHHH
T ss_pred CCccEEEecHHHHHHHHHhCCCeEEcccc--cccCceeEEEEeCCC--HHHHHHHHHHHHHHHhCcHHHHH
Confidence 954443 333333222 23445554422 223344 66777663 33444444444444333344444
No 94
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=98.18 E-value=5.1e-05 Score=59.21 Aligned_cols=201 Identities=13% Similarity=0.060 Sum_probs=120.9
Q ss_pred CCcEEEEecccchh--------------hhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CC
Q psy3760 92 TGNLTIATTHTQAR--------------YALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PS 155 (306)
Q Consensus 92 ~~~l~I~~~~~~~~--------------~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~ 155 (306)
+|.|+||+...... .+-..++..+.++. ++++++...+...++..|.+|++|+++...... ..
T Consensus 11 ~g~L~Vg~~~~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~l-g~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~eR~ 89 (243)
T 4h5g_A 11 KGKLVVATSPDYAPFEFQSLVDGKNQVVGADIDMAQAIADEL-GVKLEILSMSFDNVLTSLQTGKADLAVAGISATDERK 89 (243)
T ss_dssp HTEEEEEECCCBTTTBEEEEETTEEEEESHHHHHHHHHHHHH-TSEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHH
T ss_pred CCEEEEEECCCCCCcEeeeccCCCCcEEEeHHHHHHHHHHHh-CCceEEecccHHHHHHHHHcCCCCcccccccCChhHc
Confidence 47899999653321 45667787777663 789999999999999999999999988632211 12
Q ss_pred CCce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHH
Q psy3760 156 DKLI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYV 234 (306)
Q Consensus 156 ~~~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (306)
..+. +.+++....++++.++.+. ..-+++||.+........ .. ....+..... ......+++...++.++
T Consensus 90 ~~~~fs~py~~~~~~~~v~~~~~~---~~~~~~dl~g~~i~v~~g-~~----~~~~l~~~~~-~~~i~~~~~~~~~~~~l 160 (243)
T 4h5g_A 90 EVFDFSIPYYENKISFLVHKADVE---KYKDLTSLESANIAAQKG-TV----PESMVKEQLP-KAQLTSLTNMGEAVNEL 160 (243)
T ss_dssp TTEEECSCSBCCCEEEEEEGGGTT---TCCSHHHHHTSEEEEETT-SH----HHHHHHHHCT-TSEEEEESCHHHHHHHH
T ss_pred cEEEccCccccCcccccccccccc---cccccccCCCCEEEecCC-cH----HHHHHHHhcc-cceeEEeCCHHHHHHHH
Confidence 2333 4778888888888776532 234789999888766543 22 2333333322 23355788999999999
Q ss_pred Hhccc-eeeeecceeccc--ccCCceeeecCCC-CccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 235 ELRMG-IGIIASIAFDSN--RDKNLRSISASHL-FGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 235 ~~g~g-i~~~p~~~~~~~--~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
.+|.. ..+.....+..+ ..+++....+... .....+++..+++. ......|=+.|.+.-+....+++.
T Consensus 161 ~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~--~~L~~~~n~aL~~l~~dG~~~~i~ 232 (243)
T 4h5g_A 161 QAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNS--DDLKEVVDKVIQKLKDEGTYQSYL 232 (243)
T ss_dssp HHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSC--HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCC--HHHHHHHHHHHHHHHHCCHHHHHH
Confidence 99955 344444333322 3444443333221 22335667777763 233333333444433344455554
No 95
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=98.15 E-value=1.2e-05 Score=57.78 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=59.1
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-----CCCccccCHhHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-----GKRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-----~~~~~~lT~~G~~l~~~a~~il 74 (306)
++..++.++..+.+.+ .+.+..|+.+++|+|++|+.|++||+. |.--..++ ...+ .||+.|+.++..+....
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~~~ 117 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERN-GLVARVRDEHDRRVVRI-RLLEKGERIIEEVIEKR 117 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECCC---CEEE-EECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHC-CCeeecCCCCCcceeEe-EECHhHHHHHHHHHHHH
Confidence 3556788888887643 388999999999999999999999997 44433322 2235 79999999999988877
Q ss_pred HHHHH
Q psy3760 75 QEIEG 79 (306)
Q Consensus 75 ~~~~~ 79 (306)
.....
T Consensus 118 ~~~~~ 122 (150)
T 2rdp_A 118 QRDLA 122 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 96
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=98.15 E-value=9.7e-06 Score=58.11 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=55.4
Q ss_pred CchhhHHHHHHHHHhc------CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec------CCCccccCHhHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN------FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH------GKRIRGLTKPGQAILR 68 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~------~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~------~~~~~~lT~~G~~l~~ 68 (306)
++..++.++..+.+.. .|.+.-|+.+++++|++|+.|++||+. |. +.+. ...+ .||+.|+.++.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~-gl--Vr~~~~~DrR~~~v-~LT~~G~~~~~ 106 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRD-GL--VRVMAGADARCKRI-ELTAKGRAALQ 106 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHT-TS--BC-----------C-CBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC-CC--EEeeCCCCCCeeEE-EECHHHHHHHH
Confidence 3456778888887653 167899999999999999999999987 64 3332 2345 89999999999
Q ss_pred HHHHHHHHHHH
Q psy3760 69 SIEIIMQEIEG 79 (306)
Q Consensus 69 ~a~~il~~~~~ 79 (306)
.+.+.....++
T Consensus 107 ~~~~~~~~~~~ 117 (148)
T 4fx0_A 107 KAVPLWRGVQA 117 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887666543
No 97
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=98.15 E-value=8.3e-05 Score=58.68 Aligned_cols=201 Identities=13% Similarity=0.060 Sum_probs=121.3
Q ss_pred CCcEEEEecccchh--------------hhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CC
Q psy3760 92 TGNLTIATTHTQAR--------------YALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PS 155 (306)
Q Consensus 92 ~~~l~I~~~~~~~~--------------~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~ 155 (306)
.+.|+||+...... .+...++..+.+.. ++++++...+..++.+.+.+|++|+++...... ..
T Consensus 38 ~~~l~v~~~~~~~P~~~~~~~~~~g~~~G~~~dl~~~~~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~ 116 (269)
T 4i62_A 38 KGKLVVALNPDFAPFEYQKVVDGKNQIVGSDIELAKAIATEL-GVELELSPMSFDNVLASVQSGKADLAISGVSKTDERS 116 (269)
T ss_dssp HTEEEEEECSCBTTTBEEEEETTEEEEESHHHHHHHHHHHHH-TCEEEEEECCHHHHHHHHHTTSCSEECSSCBCCHHHH
T ss_pred CCeEEEEecCCCCCceeecccCCCCcEeeecHHHHHHHHHHH-CCceEEEEcCHHHHHHHHhCCCccEEecCCcCCHhHh
Confidence 35899999643221 34556777776664 789999999999999999999999987531111 11
Q ss_pred CCc-eeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHH
Q psy3760 156 DKL-ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYV 234 (306)
Q Consensus 156 ~~~-~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (306)
..+ -+.++.....+++++++.+ ...-+++||.+.++..... ... ..++...... .....+++...+..++
T Consensus 117 ~~~~~s~p~~~~~~~~~~~~~~~---~~i~~~~dL~g~~i~~~~g-~~~----~~~l~~~~~~-~~~~~~~~~~~~~~~l 187 (269)
T 4i62_A 117 KVFDFSTPYYTAKNKLIVKKSDL---ATYQSVNDLAQKKVGAQKG-SIQ----ETMAKDLLQN-SSLVSLPKNGNLITDL 187 (269)
T ss_dssp TTEEECSCCEECCEEEEEEGGGT---TTCSSGGGGC-CEEEEETT-SHH----HHHHHHHCTT-SEEEEESCHHHHHHHH
T ss_pred hceecccchhhcceEEEEECCcc---ccccCHHHhCCCeEEEecC-chH----HHHHHHhCCC-CcEEecCCHHHHHHHH
Confidence 222 2457788888999988742 1234789999888776543 222 2333332212 2345678999999999
Q ss_pred Hhcccee-eeecceeccc--ccCCceeeecCCC-CccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 235 ELRMGIG-IIASIAFDSN--RDKNLRSISASHL-FGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 235 ~~g~gi~-~~p~~~~~~~--~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
.+|..=+ +.+...+... ..+.+........ .....++++.+++. ......|-+.+++.-+....+++.
T Consensus 188 ~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~l~~~g~~~~i~ 259 (269)
T 4i62_A 188 KSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDS--KELKEAVDKTIQKLKESGELDKLI 259 (269)
T ss_dssp HTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESSC--HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCCC--HHHHHHHHHHHHHHHhCChHHHHH
Confidence 9994433 3444433322 3455555444332 22456777777763 335555555555554444555443
No 98
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=98.15 E-value=7.3e-06 Score=58.07 Aligned_cols=75 Identities=27% Similarity=0.356 Sum_probs=59.7
Q ss_pred CchhhHHHHHHHHHh---cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQ---NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSI 70 (306)
Q Consensus 1 m~~~~l~~f~~v~~~---~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a 70 (306)
++..++.++..+.+. +-|.+.-|+.+++|+|++|+.|++||+. | |+.|. ...+ .||+.|+.++..+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~-G--li~r~~~~~D~R~~~~-~LT~~G~~~~~~~ 104 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK-K--LIYRYVDAQDTRRKNI-GLTTSGIKLVEAF 104 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEEECCC--CCEEE-EECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC-C--CEeecCCCCCCCeeee-EECHHHHHHHHHH
Confidence 356788888888874 3389999999999999999999999997 3 44443 2334 7999999999988
Q ss_pred HHHHHHHHH
Q psy3760 71 EIIMQEIEG 79 (306)
Q Consensus 71 ~~il~~~~~ 79 (306)
.+....+..
T Consensus 105 ~~~~~~~~~ 113 (139)
T 3eco_A 105 TSIFDEMEQ 113 (139)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766544
No 99
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=98.15 E-value=9e-06 Score=57.57 Aligned_cols=77 Identities=9% Similarity=0.215 Sum_probs=58.0
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec---C--CCccccCHhHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH---G--KRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~---~--~~~~~lT~~G~~l~~~a~~il 74 (306)
|+..++.++..+.+.+ .|.+..|+.+++|+|++|+.|++||+. |.---.++ + ..+ .||+.|+.+++.+.+..
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~-gli~r~~~~~d~r~~~~-~lT~~G~~~~~~~~~~~ 108 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRD-GYVMTEKNPNDQRETLV-YLTKKGEETKKQVDVQY 108 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHT-TSEEEEECSSCTTCEEE-EECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHC-CCeeeccCCCCCceeEE-EECHHHHHHHHHHHHHH
Confidence 4567888888888743 278899999999999999999999997 43332222 1 224 79999999999888776
Q ss_pred HHHHH
Q psy3760 75 QEIEG 79 (306)
Q Consensus 75 ~~~~~ 79 (306)
..+..
T Consensus 109 ~~~~~ 113 (139)
T 3bja_A 109 SDFLK 113 (139)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 100
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=98.14 E-value=1.3e-05 Score=56.66 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=57.4
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ -+.+.-|+.+++|+|++|+.|++||+. -|+.|.. ..+ .||+.|+.++..+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~---gli~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~ 107 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCK---GWVERLPNPNDKRGVLV-KLTTGGAAICEQCHQ 107 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEEECTTCSSCEEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHC---CCEEecCCcccCceeEe-EEChhHHHHHHHHHH
Confidence 3556788888887643 278999999999999999999999987 3445432 125 799999999998888
Q ss_pred HHH-HHH
Q psy3760 73 IMQ-EIE 78 (306)
Q Consensus 73 il~-~~~ 78 (306)
... .+.
T Consensus 108 ~~~~~~~ 114 (138)
T 1jgs_A 108 LVGQDLH 114 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 775 443
No 101
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=98.14 E-value=3e-06 Score=60.33 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=58.6
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec---CC--CccccCHhHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH---GK--RIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~---~~--~~~~lT~~G~~l~~~a~~il 74 (306)
++..++.++..+.+.+ .+.+.-|+.+++|++++|+.|++||+. |.--..++ ++ .+ .||+.|+.++..+.+..
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~-gli~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~~~ 112 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQV-DLIKRERSEVDQREVFI-HLTDKSETIRPELSNAS 112 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHT-TSEEEEECSSSTTCEEE-EECHHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC-CCEEeecCCCCcceEEE-EEChHHHHHHHHHHHHH
Confidence 3566788888888754 256677999999999999999999998 54443332 22 34 79999999999988777
Q ss_pred HHHHH
Q psy3760 75 QEIEG 79 (306)
Q Consensus 75 ~~~~~ 79 (306)
..+..
T Consensus 113 ~~~~~ 117 (142)
T 2bv6_A 113 DKVAS 117 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 102
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=98.14 E-value=5.7e-06 Score=55.47 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=51.0
Q ss_pred CchhhHHHHHHHHH--hcCCHHHHHHHh--CCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHH
Q psy3760 1 MNLHQFRFVREAVR--QNFNLTEAAKAL--YTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILR 68 (306)
Q Consensus 1 m~~~~l~~f~~v~~--~~~s~~~aA~~l--~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~ 68 (306)
|+.-+.+++..+.+ .. |.+.-|+.+ ++|+++++++|++||+. -|+.+.+++++++|+.|+.+++
T Consensus 11 md~~d~~IL~~L~~~g~~-s~~eLA~~l~~giS~~aVs~rL~~Le~~---GLV~~~~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNG-SPKELEDRDEIRISKSSVSRRLKKLADH---DLLQPLANGVYVITEEGEAYLN 78 (111)
T ss_dssp CCHHHHHHHHHHHHHSCB-CHHHHHTSTTCCSCHHHHHHHHHHHHHT---TSEEECSTTCEEECHHHHHHHT
T ss_pred cCHHHHHHHHHHHHcCCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHC---CCEEecCCceEEECchHHHHHH
Confidence 45556667777765 45 889999999 99999999999999985 3555566776699999999886
No 103
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=98.13 E-value=1.1e-05 Score=57.79 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=57.9
Q ss_pred chhhHHHHHHHHH-h-cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVR-Q-NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 2 ~~~~l~~f~~v~~-~-~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
+..++.++..+.+ . +.+.+..|+.+++|+|++|+.|++||+. | |+.|. ...+ .||+.|+.++..+..
T Consensus 34 ~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~-g--lv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~ 109 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG-G--LIVRHADPQDGRRTRV-SLSSEGRRNLYGNRA 109 (147)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-T--SEEEEC------CCEE-EECHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC-C--CEeeCCCCCCCCceee-EECHHHHHHHHHHHH
Confidence 3467888888886 2 2389999999999999999999999997 2 33332 2335 799999999999888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
.......
T Consensus 110 ~~~~~~~ 116 (147)
T 2hr3_A 110 KREEWLV 116 (147)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776544
No 104
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=98.13 E-value=6.5e-06 Score=54.09 Aligned_cols=76 Identities=21% Similarity=0.190 Sum_probs=54.5
Q ss_pred chhhHHHHHHHHHh-c----CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC--CCccccCHhHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQ-N----FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG--KRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 2 ~~~~l~~f~~v~~~-~----~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~--~~~~~lT~~G~~l~~~a~~il 74 (306)
+-+.+.++..+... + .+.+.-|+.+++++|++|+.|++||+. |.---..++ +.+ .||+.|+.++..+.+..
T Consensus 11 ~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~-Glv~~~~d~R~~~v-~LT~~G~~~~~~~~~~~ 88 (95)
T 2qvo_A 11 KEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEA-KMVECELEGRTKII-RLTDKGQKIAQQIKSII 88 (95)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHT-TSEEEEEETTEEEE-EECHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-cCccCCCCCCeEEE-EEChhHHHHHHHHHHHH
Confidence 34566666666542 2 268999999999999999999999975 433222223 245 89999999999988887
Q ss_pred HHHHH
Q psy3760 75 QEIEG 79 (306)
Q Consensus 75 ~~~~~ 79 (306)
..+++
T Consensus 89 ~~~e~ 93 (95)
T 2qvo_A 89 DIMEN 93 (95)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 76553
No 105
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=98.12 E-value=1e-05 Score=58.51 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=58.5
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCC-------CccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGK-------RIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~-------~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .|.+..|+.+++|+|++|+.|++||+. | |+.|... .+ .||+.|+.++..+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~-g--lv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~ 110 (155)
T 1s3j_A 35 VTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQK-N--LIARTHNTKDRRVIDL-SLTDEGDIKFEEVLA 110 (155)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHT-T--SEEEEECSSCTTSEEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEeecCCCCCCceEEE-EECHHHHHHHHHHHH
Confidence 4566788888888743 278899999999999999999999997 4 4444322 35 799999999998887
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 111 ~~~~~~~ 117 (155)
T 1s3j_A 111 GRKAIMA 117 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765443
No 106
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=98.12 E-value=1e-05 Score=54.35 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCcc-ccCHhHHHHHHHHHHHHHH
Q psy3760 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIR-GLTKPGQAILRSIEIIMQE 76 (306)
Q Consensus 3 ~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~-~lT~~G~~l~~~a~~il~~ 76 (306)
...++++..+.+.+.+++.-|+.+++|+|++|++|+.|| +.|.-...|.|+.+. ++|+.+ +.+.+..+++.
T Consensus 26 ~~r~~IL~~L~~~~~~~~ela~~l~is~stvs~~L~~L~-~~Glv~~~~~gr~~~y~l~~~~--~~~~~~~l~~~ 97 (106)
T 1r1u_A 26 YNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLK-SVHLVKAKRQGQSMIYSLDDIH--VATMLKQAIHH 97 (106)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH-HTTSEEEEEETTEEEEEESSHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHH-HCCCeEEEEeCCEEEEEEChHH--HHHHHHHHHHH
Confidence 345677777765444899999999999999999999999 789998888877542 567654 44445554443
No 107
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=98.12 E-value=8e-06 Score=58.13 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=55.1
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .+.+.-|+.+++|+|++|+.|++||+. -|+.|. ...+ .||+.|+.++..+.+
T Consensus 35 lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~---Glv~r~~~~~DrR~~~~-~LT~~G~~~~~~~~~ 110 (142)
T 3ech_A 35 LTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGR---NLVRRERNPSDQRSFQL-FLTDEGLAIHLHAEL 110 (142)
T ss_dssp CCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHT---TSEEC----------CC-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHC---CCEeeccCCCCCCeeee-EECHHHHHHHHHHHH
Confidence 3567888888888754 366788999999999999999999985 455553 2335 799999999999888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 111 ~~~~~~~ 117 (142)
T 3ech_A 111 IMSRVHD 117 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666544
No 108
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=98.12 E-value=1.2e-05 Score=57.51 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=56.3
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec---C--CCccccCHhHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH---G--KRIRGLTKPGQAILRSIEIIMQ 75 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~---~--~~~~~lT~~G~~l~~~a~~il~ 75 (306)
++..++.++..+...+.+.+.-|+.+++|+|++|+.|++||+. |.--..++ + ..+ .||+.|+.++..+.....
T Consensus 35 l~~~~~~iL~~l~~~~~~~~ela~~l~~s~~tvs~~l~~Le~~-glv~r~~~~~d~r~~~~-~lT~~G~~~~~~~~~~~~ 112 (146)
T 2gxg_A 35 LSYLDFLVLRATSDGPKTMAYLANRYFVTQSAITASVDKLEEM-GLVVRVRDREDRRKILI-EITEKGLETFNKGIEIYK 112 (146)
T ss_dssp CCHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEE-EECHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCcCHHHHHHHhCCCchhHHHHHHHHHHC-CCEEeecCCCCCceEEE-EECHHHHHHHHHHHHHHH
Confidence 3556777777777222366777999999999999999999998 44333332 1 235 799999999998887766
Q ss_pred HHHH
Q psy3760 76 EIEG 79 (306)
Q Consensus 76 ~~~~ 79 (306)
....
T Consensus 113 ~~~~ 116 (146)
T 2gxg_A 113 KLAN 116 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 109
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=98.11 E-value=9.3e-06 Score=57.65 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=59.5
Q ss_pred CchhhHHHHHHHHHhc---CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN---FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSI 70 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~---~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a 70 (306)
++..++.++..+.+.+ -+.+.-|+.+++|++++|+.|++||+. | |+.|.. ..+ .||+.|+.++..+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~-G--li~r~~~~~d~R~~~i-~lT~~G~~~~~~~ 107 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK-K--LLYRKVSGKDSRQKCL-KLTKKANKLETII 107 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEEECSSCTTSEEE-EECHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC-C--CEEeeCCCcCCCeeee-EECHHHHHHHHHH
Confidence 3556788888888764 389999999999999999999999997 3 444431 234 7999999999988
Q ss_pred HHHHHHHHH
Q psy3760 71 EIIMQEIEG 79 (306)
Q Consensus 71 ~~il~~~~~ 79 (306)
......+.+
T Consensus 108 ~~~~~~~~~ 116 (141)
T 3bro_A 108 LSYMDSDQS 116 (141)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766554
No 110
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=98.10 E-value=6e-05 Score=58.30 Aligned_cols=191 Identities=6% Similarity=-0.054 Sum_probs=115.7
Q ss_pred CCcEEEEecccch-----------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCc
Q psy3760 92 TGNLTIATTHTQA-----------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKL 158 (306)
Q Consensus 92 ~~~l~I~~~~~~~-----------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~ 158 (306)
.++|+||+..... ..+...++..+.++. ++++++...+...++..|.+|++|+++...... ....+
T Consensus 4 a~~l~v~~~~~~~P~~~~~~~g~~~G~~~dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~ 82 (232)
T 3i6v_A 4 ADTVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRA-GLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVI 82 (232)
T ss_dssp --CEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHH-TCCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTS
T ss_pred CCEEEEEECCCCCCeeEECCCCCEeeehHHHHHHHHHHc-CCceEEEECCHHHHHHHHHCCCCCEEEeCCcCCHHHHhhc
Confidence 4678998873211 245667777777664 888999989999999999999999987532111 11222
Q ss_pred -eeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhc
Q psy3760 159 -ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELR 237 (306)
Q Consensus 159 -~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 237 (306)
-+.++.....+++++++. ++||.+ .+.. ..+... ..++...+ .....+++...++.++.+|
T Consensus 83 ~fs~p~~~~~~~~~~~~~~---------~~dL~g-~igv-~~g~~~----~~~l~~~~---~~~~~~~~~~~~~~~L~~G 144 (232)
T 3i6v_A 83 DFTQNYIPPTASSYVATSD---------GADLSG-IVAA-QTATIQ----AGYIAESG---ATLVEFATPEETIAAVRNG 144 (232)
T ss_dssp EEEEEEECCCEEEEEESST---------TCCTTS-EEEE-ETTSHH----HHHHHHSS---SEEEEESSHHHHHHHHHTT
T ss_pred CcccccccCCeEEEEECCC---------hHHhCC-CEEE-ecCchH----HHHHHhcC---CeEEEeCCHHHHHHHHHcC
Confidence 356788888899988875 677888 4444 444332 34444443 3355678999999999999
Q ss_pred cce-eeeecceeccc--cc-CCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 238 MGI-GIIASIAFDSN--RD-KNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 238 ~gi-~~~p~~~~~~~--~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
..= .+.....+..+ .. +++..++.+. .....++++.+++. ......|-+.|++.-+....+++.
T Consensus 145 rvDa~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~--~~l~~~ln~~l~~l~~~G~~~~i~ 212 (232)
T 3i6v_A 145 EADAVFADRDYLVPIVAESGGELMFVGDDV-PLGGGVGMGLRESD--GELRGKFDAAITSMKEDGTLNTMI 212 (232)
T ss_dssp SSSEEEEEHHHHHHHHHHTTTSSEEEEEEE-ECSSCEEEEECTTC--HHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CcCEEEEChHHHHHHHHhCCCCeEEecCCC-CCCCcEEEEEeCCC--HHHHHHHHHHHHHHHHCChHHHHH
Confidence 543 33444333322 22 5566655322 23346788877652 334444444444443333444443
No 111
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=98.09 E-value=0.00063 Score=54.22 Aligned_cols=192 Identities=11% Similarity=0.109 Sum_probs=126.4
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCC--------CCceee-
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPS--------DKLISI- 161 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~--------~~~~~~- 161 (306)
..+.|+||....-...++..++..+.+. -++++++...+...+.+.|.+|++|+......+... ..+...
T Consensus 14 ~~~~I~Ig~~~~te~~i~~~i~~~~Le~-~G~~Ve~~~~~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~ 92 (280)
T 3tmg_A 14 NLKSVKIGYVNWGGETAATNVLKVVFEK-MGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDLG 92 (280)
T ss_dssp -CEEEEEEECCCHHHHHHHHHHHHHHHH-TTEEEEEEECCHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHHHH-CCCceEEEECCcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcCcEEEcc
Confidence 4568999998887777888888888877 589999988888788999999999999864221111 122211
Q ss_pred c-cccceEEEEecCCCCCCCCCCcChhhhcCCC------eEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHH----HH
Q psy3760 162 P-CYQWEYVIIVPLDHPLLLLNSISLKEISNYP------LITYDLSFSGRIKLDREFSLQKLTPYIVLETINSD----II 230 (306)
Q Consensus 162 ~-l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 230 (306)
+ .....+.+++++..+ --+++||.++. ++..+++..........++..|+.........+.. .+
T Consensus 93 ~~~~~~~~~l~V~~~~~-----i~sisDL~~~~~~f~~~~~g~~~G~~~~~~~~~~l~~yGL~~~~~~v~~s~~~m~~~l 167 (280)
T 3tmg_A 93 ANYEGTIQGFVVPSYVP-----ISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALNYYGLSKEYELVPSSESVMLASL 167 (280)
T ss_dssp EEEEEEEEEEEEETTSC-----CCBGGGGTTCGGGGTTEEECCSTTCHHHHHHHHHHHHTTCTTTSEEECCCHHHHHHHH
T ss_pred ccCCCceEEEEECCCCC-----CCCHHHHHhhHHHcCCeEEecCCCchhHHHHHHHHHhcCCCCceEEEeCCHHHHHHHH
Confidence 1 223457888888763 34788888764 67677776656666778888898511222233333 24
Q ss_pred HHHHHhccc---eeeeecceecccccCCceeeecCCCC--ccceEEEEEeCCc-cccHHHHHHHHHH
Q psy3760 231 KTYVELRMG---IGIIASIAFDSNRDKNLRSISASHLF--GTTISRVIIKQGT-YLRSYVYSFIKLL 291 (306)
Q Consensus 231 ~~~v~~g~g---i~~~p~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~~~~~~~l 291 (306)
.+++.+|.- .+.-|.+.... .+++.+.-+... +....+.+.+++- ...|.+.+|++-+
T Consensus 168 ~~A~~~g~~~v~~~w~p~~~~~~---~~l~~LeD~k~~~~p~~~~~~vvr~~~~~~~P~~~~~L~~l 231 (280)
T 3tmg_A 168 DSSIKRNEWILVPLWKPHWAFSR---YDIKFLDDPDLIMGGIESVHTLVRLGLENDDFDAYYVFDHF 231 (280)
T ss_dssp HHHHHTTCCCCEEEEESCTHHHH---SCEEECBCTTCTTCSSEEEEEEEETTHHHHCHHHHHHHHHC
T ss_pred HHHHHCCCCEEEEEecCchhhhc---CCeEEecCccccCCCcceEEEEeccchhhHChHHHHHHHhC
Confidence 567777743 45566666544 368887665432 4456666666652 3457888888877
No 112
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=98.09 E-value=1.3e-05 Score=57.72 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=54.9
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEE-------ecCCCccccCHhHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFI-------RHGKRIRGLTKPGQAILRSIEII 73 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~-------R~~~~~~~lT~~G~~l~~~a~~i 73 (306)
+..++.++..+ +.+ .|.+.-|+.+++|+|++|+.|++||+. |.---. |....+ .||+.|+.++..+.+.
T Consensus 37 t~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~-Glv~r~~~~~~~D~R~~~~-~lT~~G~~~~~~~~~~ 113 (151)
T 3kp7_A 37 SAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNA-ELVKLEKPDSNTDQRLKII-KLSNKGKKYIKERKAI 113 (151)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT-TSEEC-----------CCB-EECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeeCCCCCCCCCeeEE-EECHhHHHHHHHHHHH
Confidence 45677777777 554 356777999999999999999999987 544332 223445 7999999999998888
Q ss_pred HHHHH
Q psy3760 74 MQEIE 78 (306)
Q Consensus 74 l~~~~ 78 (306)
...+.
T Consensus 114 ~~~~~ 118 (151)
T 3kp7_A 114 MSHIA 118 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 113
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=98.08 E-value=1.3e-05 Score=54.19 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCC--HHHHHHHh-CCCchHHHHHHHHHHHHcCceeEEec---CCCccccCHhHHHHHHHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFN--LTEAAKAL-YTSQPGVSKAIIELEEELSIDIFIRH---GKRIRGLTKPGQAILRSIEIIMQEIEG 79 (306)
Q Consensus 6 l~~f~~v~~~~~s--~~~aA~~l-~isq~~~s~~i~~LE~~lg~~Lf~R~---~~~~~~lT~~G~~l~~~a~~il~~~~~ 79 (306)
+.++..+.+...+ ++.=|+.+ ++|++++|++|+.||+. -|+.|. ...+ +||+.|+.+.+....+.+-.+.
T Consensus 30 l~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~---GlV~r~~~r~~~y-~LT~~G~~l~~~l~~l~~w~~~ 105 (111)
T 3df8_A 30 MLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS---GLVERRSGQITTY-ALTEKGMNVRNSLMPLLQYISV 105 (111)
T ss_dssp HHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT---TSEEEEESSSEEE-EECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC---CCEEEeecCcEEE-EECccHHHHHHHHHHHHHHHHH
Confidence 4445555533225 89999999 99999999999999985 466665 2344 8999999999998888775444
Q ss_pred H
Q psy3760 80 L 80 (306)
Q Consensus 80 ~ 80 (306)
+
T Consensus 106 ~ 106 (111)
T 3df8_A 106 L 106 (111)
T ss_dssp H
T ss_pred h
Confidence 3
No 114
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=98.08 E-value=1.4e-05 Score=57.49 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=58.2
Q ss_pred CchhhHHHHHHHHHhc--CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCC-------CccccCHhHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN--FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGK-------RIRGLTKPGQAILRSIE 71 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~--~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~-------~~~~lT~~G~~l~~~a~ 71 (306)
++..++.++..+.+.+ .+.+.-|+.+++++|++|+.|++||+. -|+.|... .+ .||+.|+.++..+.
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~---Glv~r~~~~~D~R~~~~-~LT~~G~~~~~~~~ 112 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER---GLVVRTLDPSDRRNKLI-AATEEGRRLRDDAK 112 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT---TSEEC-----------C-EECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC---CCEEeeCCccccchhee-eECHHHHHHHHHHH
Confidence 3567888888887643 288999999999999999999999985 55666432 25 79999999999888
Q ss_pred HHHHHHHH
Q psy3760 72 IIMQEIEG 79 (306)
Q Consensus 72 ~il~~~~~ 79 (306)
+....+..
T Consensus 113 ~~~~~~~~ 120 (150)
T 3fm5_A 113 ARVDAAHG 120 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766544
No 115
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=98.07 E-value=1.1e-05 Score=58.08 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=57.2
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .+.+.-|+.+++|++++|+.|++||+.= |+.|. ...+ .||+.|+.++..+..
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~G---lv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~ 113 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAG---LIERRTNPEHARSHRY-WLTPRGEAIITAIRA 113 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEECCSSSTTSCEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CeeecCCcccccceee-EEChhhHHHHHHHHH
Confidence 3567888899998865 1345559999999999999999999873 33432 2244 799999999998887
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 114 ~~~~~~~ 120 (152)
T 3bj6_A 114 DEMAKLA 120 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
No 116
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=98.07 E-value=6.3e-06 Score=56.92 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=47.8
Q ss_pred hhHHHHHHHH--HhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhHHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAV--RQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPGQAILRSIEIIMQ 75 (306)
Q Consensus 4 ~~l~~f~~v~--~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G~~l~~~a~~il~ 75 (306)
..++++..+. ... |++..|+.+|+|+|++|++|+.|| +.|.-...|.|+.. +++|+.| +...+..+.+
T Consensus 43 ~rl~IL~~L~~~~~~-s~~eLa~~l~is~stvs~~L~~L~-~~Glv~~~~~gr~~~y~l~~~~--~~~~~~~l~~ 113 (122)
T 1u2w_A 43 NRAKITYALCQDEEL-CVCDIANILGVTIANASHHLRTLY-KQGVVNFRKEGKLALYSLGDEH--IRQIMMIALA 113 (122)
T ss_dssp HHHHHHHHHHHSSCE-EHHHHHHHHTCCHHHHHHHHHHHH-HTTSEEEC----CCEEEESCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCc-CHHHHHHHHCcCHHHHHHHHHHHH-HCCCeEEEEECCEEEEEECHHH--HHHHHHHHHH
Confidence 4567787777 344 899999999999999999999999 78998888887644 2677654 3333444433
No 117
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=98.07 E-value=1.7e-05 Score=57.27 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=57.9
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-----CCCccccCHhHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-----GKRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-----~~~~~~lT~~G~~l~~~a~~il 74 (306)
|+..++.++..+.+.+ .|.+..|+.+++|+|++|+.|++||+. |.--..+. ...+ .||+.|+.++..+.+..
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~-Gli~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~~~ 119 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKR-GLVVREMDPVDRRTYRV-VLTEKGKEIFGEILSNF 119 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHT-TSEEEEECTTTSSCEEE-EECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeeCCCCCcceeEE-EECHHHHHHHHHHHHHH
Confidence 3567888888888742 388999999999999999999999997 33222221 2234 79999999999887776
Q ss_pred HHHHH
Q psy3760 75 QEIEG 79 (306)
Q Consensus 75 ~~~~~ 79 (306)
.....
T Consensus 120 ~~~~~ 124 (154)
T 2eth_A 120 ESLLK 124 (154)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 118
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=98.06 E-value=2e-06 Score=61.73 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=57.6
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .+.+.-|+.+++|+|++|+.|++||+. -|+.|.. ..+ .||+.|+.++..+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~---glv~r~~~~~d~R~~~~-~LT~~G~~~~~~~~~ 113 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQ---GLITRKRSEEDERSVLI-SLTEDGALLKEKAVD 113 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHH---TSEECCBCSSCTTSBEE-EECHHHHSGGGGTTT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHC---CCEEeccCCCCCCeeEE-EECHhHHHHHHHHHH
Confidence 3567788888888754 256677999999999999999999998 3455532 225 799999999998877
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 114 ~~~~~~~ 120 (147)
T 1z91_A 114 IPGTILG 120 (147)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 119
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=98.05 E-value=1.9e-05 Score=60.90 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCH--HHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-CCccccCHhHHHHHHHHHHHHHHHHHHH
Q psy3760 7 RFVREAVRQNFNL--TEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-KRIRGLTKPGQAILRSIEIIMQEIEGLK 81 (306)
Q Consensus 7 ~~f~~v~~~~~s~--~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-~~~~~lT~~G~~l~~~a~~il~~~~~~~ 81 (306)
+++..+.+.|.+. +.-|+.+++|+|++|+.|++||+. -|+.|.. +++ .||+.|+.++..+.+....++...
T Consensus 13 ~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~---GlV~r~~~~~v-~LT~~G~~~~~~~~~~~~~~e~~l 86 (226)
T 2qq9_A 13 RTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERD---GLVVVASDRSL-QMTPTGRTLATAVMRKHRLAERLL 86 (226)
T ss_dssp HHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEECTTSBE-EECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEeCCCCe-EECHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333254 899999999999999999999998 4566655 456 899999999998887766555544
No 120
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=98.05 E-value=7.7e-06 Score=58.16 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=57.4
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-----CCCccccCHhHHHHH-HHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-----GKRIRGLTKPGQAIL-RSIEII 73 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-----~~~~~~lT~~G~~l~-~~a~~i 73 (306)
|+..++.++..+.+.+ .|.+..|+.+++|++++|+.|++||+. |.--..+. ...+ .||+.|+.++ ..+...
T Consensus 29 l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~-gli~~~~~~~d~r~~~~-~lT~~G~~~~~~~~~~~ 106 (142)
T 3bdd_A 29 ISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEES-GYIIRKRNPDNQREVLV-WPTEQAREALITNPSAH 106 (142)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECSSSTTCEEE-EECHHHHHHHTTSCCHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEecCCCCCCCeeEE-EECHHHHHHHHHHHHHH
Confidence 4567888888887643 378888999999999999999999997 43333322 2234 7999999999 777666
Q ss_pred HHHHHH
Q psy3760 74 MQEIEG 79 (306)
Q Consensus 74 l~~~~~ 79 (306)
...+..
T Consensus 107 ~~~~~~ 112 (142)
T 3bdd_A 107 HQAIKT 112 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 121
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=98.05 E-value=0.00011 Score=58.42 Aligned_cols=197 Identities=13% Similarity=0.030 Sum_probs=120.6
Q ss_pred CCcEEEEecccch--------------hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CC
Q psy3760 92 TGNLTIATTHTQA--------------RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PS 155 (306)
Q Consensus 92 ~~~l~I~~~~~~~--------------~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~ 155 (306)
.+.|+||+..... ..+...++..+.++. ++++++...+...++..+.+|++|+++...... ..
T Consensus 20 ~~~l~v~~~~~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~-g~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~t~~r~ 98 (271)
T 2iee_A 20 KGKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRL-GLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDRE 98 (271)
T ss_dssp HTEEEEEECSCBTTTBEEETTTTCCEEECHHHHHHHHHHHHT-TCEEEEEECCSTTHHHHHHHTSSSEECSSCBCCHHHH
T ss_pred CCeEEEEECCCCCCeeEeCCCCCCCCceeeHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHHCCCcCEEEeCCcCChhhc
Confidence 3579999862111 246667888888775 789999988999999999999999998532111 11
Q ss_pred CCce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHH--HH
Q psy3760 156 DKLI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDII--KT 232 (306)
Q Consensus 156 ~~~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 232 (306)
..+. +.++.....+++++++.+. ..-+++||.+..+.... +.. ....++..+. ....+++...+ +.
T Consensus 99 ~~~~fs~p~~~~~~~l~~~~~~~~---~i~~~~dL~g~~i~v~~-g~~----~~~~l~~~~~---~~~~~~~~~~~~l~~ 167 (271)
T 2iee_A 99 EKFAFSTPYKYSYGTAIVRKDDLS---GIKTLKDLKGKKAAGAA-TTV----YMEVARKYGA---KEVIYDNATNEQYLK 167 (271)
T ss_dssp TTEEECCCSEEEEEEEEECTTTGG---GCSSGGGGTTCEEESCT-TSH----HHHHHHHTTC---EEEECSSCCHHHHHH
T ss_pred cceEEeecceeCCeEEEEECCCCC---CCCCHHHhCCCEEEEeC-Ccc----HHHHHHHcCC---ceEEeCChhhHHHHH
Confidence 2222 4577888899999988742 13478999888766543 322 2344555554 34566777777 89
Q ss_pred HHHhccceeeeecceeccc-----ccCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhh
Q psy3760 233 YVELRMGIGIIASIAFDSN-----RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 233 ~v~~g~gi~~~p~~~~~~~-----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (306)
++..|..=+++....+..+ ....+..++ .......+++++.+++. ......|-+.|.+.-+....+++
T Consensus 168 ~L~~GrvD~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~--~~l~~~ln~al~~l~~~G~~~~i 240 (271)
T 2iee_A 168 DVANGRTDVILNDYYLQTLALAAFPDLNITIHP-DIKYMPNKQALVMKKSN--AALQKKMNEALKEMSKDGSLTKL 240 (271)
T ss_dssp HHHHTSSCEEEEEHHHHHHHHHHCTTSSCEECS-SCCEEEEEECCEEETTC--HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHcCCccEEeccHHHHHHHHHhCCCCceEEec-CCCcccceEEEEEcCCC--HHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999844355554333221 122344442 22233457778888763 33445554555444443344444
No 122
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=98.03 E-value=2.8e-05 Score=55.44 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=58.5
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEE-----ecCCCccccCHhHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFI-----RHGKRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~-----R~~~~~~~lT~~G~~l~~~a~~il 74 (306)
++..++.++..+.+.+ .|++..|+.+++|+|++|+.|++||+. |.--.. |....+ .||+.|+.++..+....
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~-glv~r~~~~~d~r~~~~-~lT~~G~~~~~~~~~~~ 108 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEAD-GYLTRTPDPADRRAYFL-VITRKGEEVIEKVIERR 108 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEE-EECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHC-CCeeecCCCCCCceEEE-EECHHHHHHHHHHHHHH
Confidence 4567788888887643 388999999999999999999999997 332222 122345 79999999999888776
Q ss_pred HHHHH
Q psy3760 75 QEIEG 79 (306)
Q Consensus 75 ~~~~~ 79 (306)
.....
T Consensus 109 ~~~~~ 113 (145)
T 2a61_A 109 ENFIE 113 (145)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 123
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=98.03 E-value=3.7e-05 Score=52.13 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHh-CCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFNLTEAAKAL-YTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEIIMQEI 77 (306)
Q Consensus 6 l~~f~~v~~~~~s~~~aA~~l-~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~il~~~ 77 (306)
+.++..+.+.+.+++.-|+.+ ++|++++|++|++||+. | |+.|.. ..+ .||+.|+.+++.+..+.+-.
T Consensus 25 ~~IL~~L~~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~-G--lI~r~~~~~d~r~~~~-~LT~~G~~~~~~~~~l~~w~ 100 (112)
T 1z7u_A 25 LSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKD-G--LVHRESFNELPPRVEY-TLTPEGYALYDALSSLCHWG 100 (112)
T ss_dssp HHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHHHHH-T--SEEEEEECCSSCEEEE-EECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHhccCCHHHHHHHHHHHHHC-C--CEEEeecCCCCCeEEE-EECHhHHHHHHHHHHHHHHH
Confidence 445555554434899999999 99999999999999986 3 333331 224 89999999999888876655
Q ss_pred HHHHHHHH
Q psy3760 78 EGLKKIGK 85 (306)
Q Consensus 78 ~~~~~~~~ 85 (306)
++......
T Consensus 101 ~~~~~~~~ 108 (112)
T 1z7u_A 101 ETFAQKKA 108 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 124
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=98.03 E-value=2.2e-05 Score=55.74 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=58.8
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeE----EecCCCccccCHhHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIF----IRHGKRIRGLTKPGQAILRSIEIIMQ 75 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf----~R~~~~~~~lT~~G~~l~~~a~~il~ 75 (306)
++..++.++..+.+.+ -|.+..|+.+++|++++|+.|++||+.==+.-. +|....+ .||+.|+.++..+.+...
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~~~~ 112 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYV-NLTEKGQQCFVSMSGDME 112 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEE-EECHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEE-EECHHHHHHHHHHHHHHH
Confidence 4567788888888743 278999999999999999999999987322222 1223345 799999999998887766
Q ss_pred HHHH
Q psy3760 76 EIEG 79 (306)
Q Consensus 76 ~~~~ 79 (306)
.+..
T Consensus 113 ~~~~ 116 (142)
T 2fbi_A 113 KNYQ 116 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 125
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=98.02 E-value=1e-05 Score=57.17 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=57.4
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeE----EecCCCccccCHhHHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIF----IRHGKRIRGLTKPGQAILRSIEIIMQ 75 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf----~R~~~~~~~lT~~G~~l~~~a~~il~ 75 (306)
++..++.++..+.+.+ .+.+.-|+.+++|+|++|+.|++||+.=-+.-. +|....+ .||+.|+.++..+.+...
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~-~lT~~G~~~~~~~~~~~~ 105 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYIL-EVTRRGEEIIPLILKVEE 105 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEE-EECHHHHHTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEe-eECHhHHHHHHHHHHHHH
Confidence 3566788888888754 266777999999999999999999987322221 1222345 799999999998887776
Q ss_pred HHH
Q psy3760 76 EIE 78 (306)
Q Consensus 76 ~~~ 78 (306)
...
T Consensus 106 ~~~ 108 (138)
T 3bpv_A 106 RWE 108 (138)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 126
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=98.02 E-value=7.2e-05 Score=58.98 Aligned_cols=173 Identities=14% Similarity=0.046 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHhCCCcEEEEEeC-------------ChhHHHHHHHcCCeeEEEEccccC--CCCCce-eeccccceEE
Q psy3760 106 YALPKIIKEFTIQFPKVKLSLLQG-------------NPKQITEMIRNDQADIAIVTEILS--PSDKLI-SIPCYQWEYV 169 (306)
Q Consensus 106 ~~l~~~l~~~~~~~p~~~i~~~~~-------------~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~~-~~~l~~~~~~ 169 (306)
.+...++..+.++. ++++++... +...++..|.+|++|+++...... ....+. +.++.....+
T Consensus 34 G~~~dl~~~ia~~l-g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~ 112 (263)
T 1mqi_A 34 GYCVDLAAEIAKHC-GFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS 112 (263)
T ss_dssp SHHHHHHHHHHHHH-TCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEE
T ss_pred eeHHHHHHHHHHHc-CceEEEEEccccccCccCCCCCCcHHHHHHHHcCCcCEEEEeeEecHHHHhhcccccceecccEE
Confidence 35566777777664 678888876 788999999999999998521211 112333 3578888999
Q ss_pred EEecCCCCCCCCCCcChhhhcCCCe---EeecCCCCcHHHHHHHHHhCCCc-----------eeEEEEecCHHHHHHHH-
Q psy3760 170 IIVPLDHPLLLLNSISLKEISNYPL---ITYDLSFSGRIKLDREFSLQKLT-----------PYIVLETINSDIIKTYV- 234 (306)
Q Consensus 170 ~v~~~~~~l~~~~~i~~~dl~~~~~---i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v- 234 (306)
++++++.+ .-+++||.+... .....+ .. .+.+...++. ......+++...++.++
T Consensus 113 ~~~~~~~~-----i~~~~dL~g~~~~~ig~v~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (263)
T 1mqi_A 113 IMIKKGTP-----IESAEDLSKQTEIAYGTLDSG-ST----KEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVR 182 (263)
T ss_dssp EEEETTCS-----CCSHHHHHTCSSSEEECBSSS-HH----HHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHH
T ss_pred EEEcCccc-----cCCHHHHhcccCeeEEEEecc-HH----HHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHh
Confidence 99998875 237899998873 223222 11 1223333321 11244678899999999
Q ss_pred -Hhccceeeeec-ceeccc-ccC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHh
Q psy3760 235 -ELRMGIGIIAS-IAFDSN-RDK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLS 292 (306)
Q Consensus 235 -~~g~gi~~~p~-~~~~~~-~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 292 (306)
..|. .+++-. ..+... ... .+..++ .......++++.+++......+.+.+..++
T Consensus 183 ~~~g~-da~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~l~~~in~~l~~l~ 242 (263)
T 1mqi_A 183 KSKGK-YAYLLESTMNEYIEQRKPCDTMKVG--GNLDSKGYGIATPKGSSLGNAVNLAVLKLN 242 (263)
T ss_dssp HTTTS-EEEEEEHHHHHHHTTSTTCCEEEES--CCSCCEEECCEEETTCTTHHHHHHHHHHHH
T ss_pred hcCCc-EEEEechHHHHHHHhcCCCceEEcC--CcccccceEEEEeCCCccHHHHHHHHHHHH
Confidence 8888 454443 333222 222 333332 223345778888887544444444444443
No 127
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=98.01 E-value=0.00065 Score=53.33 Aligned_cols=188 Identities=10% Similarity=0.077 Sum_probs=125.8
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCCC--------CCcee-ec-
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPS--------DKLIS-IP- 162 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~~--------~~~~~-~~- 162 (306)
+.|+||....-...++..++..+.+.. ++++++...+...+.+.|.+|++|+......+... ..+.. -+
T Consensus 2 ~~I~ig~~~w~e~~i~~~i~~~~Le~~-G~~Ve~~~~~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~ 80 (256)
T 3l6g_A 2 KKVDLVYMNWDSEVASINVLTQAMKEH-GFDVKTTALDNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPN 80 (256)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHT-TEEEEEEECCHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHHHHHHC-CCceEEEECChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCCceEEcccc
Confidence 579999998888889999999988887 99999999888889999999999998764221110 11221 11
Q ss_pred cccceEEEEecCCCCCCCCCCcChhhhcC---CCeEeecCCCCcHHHHHHHHHhC-CCc-eeEEEEecCHHH----HHHH
Q psy3760 163 CYQWEYVIIVPLDHPLLLLNSISLKEISN---YPLITYDLSFSGRIKLDREFSLQ-KLT-PYIVLETINSDI----IKTY 233 (306)
Q Consensus 163 l~~~~~~~v~~~~~~l~~~~~i~~~dl~~---~~~i~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~----~~~~ 233 (306)
.....+.+++++.. .--+++||.+ ..++..+++..........++.. |+. .+. ...+... +.++
T Consensus 81 ~~~~~~~l~Vp~~~-----~i~si~DL~~~~~g~~~g~~~G~~~~~~~~~~l~~y~gL~~~~~--v~~s~~~m~~~l~~A 153 (256)
T 3l6g_A 81 LKGAKVGFVVPSYM-----NVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDNLKDWKL--VPSSSGAMTVALGEA 153 (256)
T ss_dssp EEEEEEEEEEETTS-----CCCBGGGCSSGGGGEEECCCTTCHHHHHHHHHHTTCGGGTTCEE--ECCCHHHHHHHHHHH
T ss_pred CCCceEEEEECCcc-----CCCCHHHHHHhcCCeEEecCCCchhhHHHHHHHHhcCCCCCeEE--ecCCHHHHHHHHHHH
Confidence 22346888888876 2346777753 46777777776666667778888 775 332 2234332 3477
Q ss_pred HHhc---cceeeeecceecccccCCceeeecCCCC--ccceEEEEEeCC-ccccHHHHHHHHHH
Q psy3760 234 VELR---MGIGIIASIAFDSNRDKNLRSISASHLF--GTTISRVIIKQG-TYLRSYVYSFIKLL 291 (306)
Q Consensus 234 v~~g---~gi~~~p~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~~~~~~~l 291 (306)
+++| ...+.-|.+.... .+++.+.-+... +....+.+.+++ ....|.+.+|++-+
T Consensus 154 ~~~g~~~v~~~w~p~~~~~~---~~l~~LeDpk~~~~~~~~~~~vvr~~~~~~~P~~~~~L~~~ 214 (256)
T 3l6g_A 154 IKQHKDIVITGWSPHWMFNK---YDLKYLADPKGTMGTSENINTIVRKGLKKENPEAYKVLDKF 214 (256)
T ss_dssp HHTTCCCCEEEEESCTHHHH---SCEEECBCTTCTTCCCEEEEEEEETTHHHHCHHHHHHHHHC
T ss_pred HHCCCCEEEEeecCchhhhh---cCeEEecCCccccCCcceEEEeechhHHHHChHHHHHHHhc
Confidence 7788 3444566666544 378888765532 345666666665 23467788888776
No 128
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=98.00 E-value=2.1e-05 Score=50.92 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=49.8
Q ss_pred chhhHHHHHHHHHh------c-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEe----cCCCccccCHhHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQ------N-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIR----HGKRIRGLTKPGQAILRSI 70 (306)
Q Consensus 2 ~~~~l~~f~~v~~~------~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R----~~~~~~~lT~~G~~l~~~a 70 (306)
+.-++-.+..+.+. + .++.+-|+.+.+++|++||.++.||+.= |+.| ++++.+.||++|+.+++.+
T Consensus 15 ~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~G---LV~r~~~~D~R~~v~LT~~G~~~l~~~ 91 (96)
T 2obp_A 15 DPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAG---LADVSVEADGRGHASLTQEGAALAAQL 91 (96)
T ss_dssp CHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEECTTSCEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCC---CEEeecCCCCceeEEECHHHHHHHHHh
Confidence 34455555555554 1 2899999999999999999999999852 2222 3555568999999999876
Q ss_pred H
Q psy3760 71 E 71 (306)
Q Consensus 71 ~ 71 (306)
.
T Consensus 92 ~ 92 (96)
T 2obp_A 92 F 92 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 129
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=98.00 E-value=1.9e-05 Score=58.73 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=58.6
Q ss_pred CchhhHHHHHHHHHhc----CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeE----EecCCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN----FNLTEAAKALYTSQPGVSKAIIELEEELSIDIF----IRHGKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~----~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf----~R~~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ -+.+.-|+.+++|+|++|+.|++||+.==+.-. +|....+ .||+.|+.++..+..
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~-~LT~~G~~~~~~~~~ 145 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASI-RLTPQGRALVTHLLP 145 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCB-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEE-EECHHHHHHHHHHHH
Confidence 3567888899998864 389999999999999999999999997322221 2223456 899999999998877
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
.......
T Consensus 146 ~~~~~~~ 152 (181)
T 2fbk_A 146 AHLATTQ 152 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665443
No 130
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.98 E-value=2.7e-05 Score=56.70 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=57.9
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEe-----cCCCccccCHhHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIR-----HGKRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R-----~~~~~~~lT~~G~~l~~~a~~il 74 (306)
++..++.++..+.+.+ .+.+..|+.+++|++++|+.|++||+. |.--..+ ....+ .||+.|+.++..+....
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~-Gli~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~~~ 127 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQAD-GLVRREVDSDDQRSSRV-YLTPAGRAVYDRLWPHM 127 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEC--CCSSEEE-EECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHC-CCEEecCCCCCCCeeEE-EECHHHHHHHHHHHHHH
Confidence 3567788888888643 278899999999999999999999997 3322222 22335 79999999999888776
Q ss_pred HHHHH
Q psy3760 75 QEIEG 79 (306)
Q Consensus 75 ~~~~~ 79 (306)
..+..
T Consensus 128 ~~~~~ 132 (162)
T 3cjn_A 128 RASHD 132 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 131
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=97.97 E-value=3.4e-05 Score=55.24 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=52.5
Q ss_pred CchhhHHHHHHHHHh---cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEe-------cCCCccccCHhHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQ---NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIR-------HGKRIRGLTKPGQAILRSI 70 (306)
Q Consensus 1 m~~~~l~~f~~v~~~---~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R-------~~~~~~~lT~~G~~l~~~a 70 (306)
++..++.++..+.+. +.+.+.-|+.+++++|++|+.|++||+. -|+.| ....+ .||+.|+.+++.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~---Glv~r~~~~~DrR~~~~-~LT~~G~~~~~~~ 114 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK---GYIERRIPENNARQKNI-YVLPKGAALVEEF 114 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT---TSBCCC--------CCC-CBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHC---CCEEeeCCCCCchhhee-eECHHHHHHHHHH
Confidence 355678888888875 3478999999999999999999999986 23333 23455 8999999999998
Q ss_pred HHHHHHHHH
Q psy3760 71 EIIMQEIEG 79 (306)
Q Consensus 71 ~~il~~~~~ 79 (306)
......+.+
T Consensus 115 ~~~~~~~~~ 123 (148)
T 3jw4_A 115 NNIFLEVEE 123 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888766554
No 132
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.97 E-value=5e-05 Score=53.99 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=58.1
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ -+.+.-|+.+++++|++|+.|++||+. | |+.|. ...+ .||+.|+.++..+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~-G--lv~r~~~~~D~R~~~~-~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRK-E--LIVREISTEDRRISLL-SLTDKGRKETTELRD 110 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEEC----CCSCEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHC-C--CeeccCCCccCceeee-eECHHHHHHHHHHHH
Confidence 3556788888888654 267888999999999999999999986 4 44443 2334 799999999998888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 111 ~~~~~~~ 117 (143)
T 3oop_A 111 IVEASCE 117 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
No 133
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=97.96 E-value=1.9e-05 Score=54.93 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=56.9
Q ss_pred CchhhHHHHHHHHHh--c-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEe-------cCCCccccCHhHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQ--N-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIR-------HGKRIRGLTKPGQAILRSI 70 (306)
Q Consensus 1 m~~~~l~~f~~v~~~--~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R-------~~~~~~~lT~~G~~l~~~a 70 (306)
++..++.++..+.+. + -+.+.-|+.+++++|++|+.|++||+. | |+.| ....+ .||+.|+.++..+
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-G--lv~r~~~~~D~R~~~i-~LT~~G~~~~~~~ 110 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQE-D--YFDKKRNEHDERTVLI-LVNAQQRKKIESL 110 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT-T--SSCCBCCSSSSCCCEE-ECCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEEecCCCCCCCeeEE-EECHHHHHHHHHH
Confidence 355678888888875 2 268899999999999999999999985 3 4444 22334 7999999999988
Q ss_pred HHHHHHHH
Q psy3760 71 EIIMQEIE 78 (306)
Q Consensus 71 ~~il~~~~ 78 (306)
.+.+..+-
T Consensus 111 ~~~~~~~~ 118 (127)
T 2frh_A 111 LSRVNKRI 118 (127)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765543
No 134
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.96 E-value=3.3e-05 Score=55.07 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=57.6
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ -+.+.-|+.+++++|++|+.|++||+. -|+.|. ...+ .||+.|+.++..+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~---Glv~r~~~~~D~R~~~~-~LT~~G~~~~~~~~~ 104 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQ---GLIEWQEGEQDRRKRLL-SLTETGKAYAAPLTE 104 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEECCCSSCGGGSCE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEeeccCCCCCceeee-eEChhHHHHHHHHHH
Confidence 3556788888887654 267888999999999999999999986 355553 2345 799999999988877
Q ss_pred HHHHHH
Q psy3760 73 IMQEIE 78 (306)
Q Consensus 73 il~~~~ 78 (306)
....+.
T Consensus 105 ~~~~~~ 110 (145)
T 3g3z_A 105 SAQEFS 110 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 135
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=97.95 E-value=4.2e-05 Score=60.32 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=102.4
Q ss_pred ceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHHHHHhh----------ccCCCCcEEEEecccchhhhhHHHHHHH
Q psy3760 46 IDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKKIGKEF----------SAYDTGNLTIATTHTQARYALPKIIKEF 115 (306)
Q Consensus 46 ~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~~----------~~~~~~~l~I~~~~~~~~~~l~~~l~~~ 115 (306)
.+||.-.+ + .+++..+.|+.++.. ++-+++.....-. .....|+|+|+.+.++ ..++..+...|
T Consensus 104 Rply~y~~-~--~~~~~vk~Fl~f~lS--~~GQ~iv~~~GyvPl~~~~~~~~~~~~~g~i~i~GSst~-~p~~~~~ae~f 177 (265)
T 4h1x_A 104 RPFNIVWS-S--NLSKLGQDFISFIHS--KQGQQVVTDNKFIEAKTETTEYTSQHLSGKLSVVGSTSV-SSLMEKLAEAY 177 (265)
T ss_dssp EEEEEEEC-T--TCCHHHHHHHHHHHB--HHHHHHHHHTTCBCCCCCCBCCCCCCCEEEEEEEECHHH-HHHHHHHHHHH
T ss_pred EEEEEEEC-C--CCCHHHHHHHHHHhh--cccceeeecCCcEEecchhhhhhhccccceeEEecCcch-HHHHHHHHHHH
Confidence 45555543 3 478888888887642 2233343333222 2456789999999885 56899999999
Q ss_pred HHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCC--CCCceeeccccceEEEEecCCCCCCCCCCcChhhhc
Q psy3760 116 TIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSP--SDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS 190 (306)
Q Consensus 116 ~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~--~~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~ 190 (306)
.+.||++++.+...++..-+..+..|.+||+....+..+ ..++...++..+.+++++++++|.. .++.++|.
T Consensus 178 ~~~~p~~~v~~~~~GSg~G~~~~~~g~~di~~ssr~l~~~e~~~~~~~~va~d~iavvvn~~n~~~---~Lt~~ql~ 251 (265)
T 4h1x_A 178 KKENPEVTIDITSNGSSAGITAVKEKTADIGMVSRELTPEEGKSLTHDAIALDGIAVVVNNDNKAS---QVSMAELA 251 (265)
T ss_dssp HHHCTEEEEEEEESCHHHHHHHHHHTSCSEEEESSCCCHHHHTTCEEEEEEEEEEEEEECTTCCCC---EECHHHHH
T ss_pred HhhCCCceeeEecCCcHHHHHHHHcCCCceeeccccCChHHHcCCeEeeEEEEeEEEEECCCCCcc---ccCHHHHH
Confidence 999999999999999999999999999999999755332 2478889999999999999998843 36666654
No 136
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=97.95 E-value=3.8e-05 Score=55.48 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=59.0
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .+.+..|+.++++++++|+.|++||+. | |+.|. ...+ .||+.|+.++..+..
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~-G--lv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~ 116 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDAR-G--LVTRVADAKDKRRVRV-RLTDDGRALAESLVA 116 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-T--SEEECC------CCCE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEEeccCCCcCCeeEe-EECHHHHHHHHHHHH
Confidence 3556788888887643 278999999999999999999999987 3 44443 2345 799999999999888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 117 ~~~~~~~ 123 (155)
T 3cdh_A 117 SARAHET 123 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776544
No 137
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=97.95 E-value=2.1e-05 Score=52.07 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=47.1
Q ss_pred chhhHHHHHHHHHh--cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhHHH
Q psy3760 2 NLHQFRFVREAVRQ--NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPGQA 65 (306)
Q Consensus 2 ~~~~l~~f~~v~~~--~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G~~ 65 (306)
|...++++..+.+. . +++..|+.+|+|||++|++|+.||+. .-...|.|+.. +++|+.|..
T Consensus 26 ~~~Rl~IL~~l~~~~~~-~~~ela~~l~is~stvs~hL~~L~~~--lv~~~~~gr~~~y~l~~~~~~ 89 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKAL-NVTQIIQILKLPQSTVSQHLCKMRGK--VLKRNRQGLEIYYSINNPKVE 89 (99)
T ss_dssp SHHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHBTT--TBEEEEETTEEEEECCCHHHH
T ss_pred CHHHHHHHHHHHHCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHH--hhhheEeCcEEEEEEChHHHH
Confidence 34567777555533 5 89999999999999999999999998 66667777654 278887753
No 138
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=97.93 E-value=2.6e-05 Score=56.74 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=57.8
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ -+.+.-|+.++++++++|+.|++||+. | |+.|.. ..+ .||+.|+.++..+..
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~-G--lv~r~~~~~DrR~~~~-~LT~~G~~~~~~~~~ 126 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDE-G--LAARSISDADQRKRTV-VLTRKGKKKLAEISP 126 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT-T--SEEECC---CCCSCEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEEeeCCcccCCeeEe-eECHHHHHHHHHHHH
Confidence 3556778888887643 256788999999999999999999985 4 555432 334 899999999998888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 127 ~~~~~~~ 133 (161)
T 3e6m_A 127 LINDFHA 133 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666544
No 139
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=97.92 E-value=4.1e-05 Score=56.15 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=57.2
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ -+.+.-|+.+++|++++|+.|++||+. | |+.|. ...+ .||+.|+.++..+..
T Consensus 43 lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~-G--lV~r~~~~~DrR~~~~-~LT~~G~~~~~~~~~ 118 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGA-E--LIDRLPHPTSRRELLA-ALTKRGRDVVRQVTE 118 (168)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHT-T--SEEEEECSSCSSCEEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHC-C--CEEeccCCCCCCeeEE-EECHHHHHHHHHHHH
Confidence 3566788888887743 267888999999999999999999986 3 44442 1225 799999999998877
Q ss_pred HHHHHH
Q psy3760 73 IMQEIE 78 (306)
Q Consensus 73 il~~~~ 78 (306)
......
T Consensus 119 ~~~~~~ 124 (168)
T 2nyx_A 119 HRRTEI 124 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766544
No 140
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=97.90 E-value=2.8e-05 Score=56.47 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=56.8
Q ss_pred CchhhHHHHHHHH-Hh-cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAV-RQ-NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIE 71 (306)
Q Consensus 1 m~~~~l~~f~~v~-~~-~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~ 71 (306)
++..++.++..+. +. +-+.+.-|+.++++++++|+.|++||+. -|+.|.. ..+ .||+.|+.++..+.
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~---Gli~r~~~~~d~R~~~~-~lT~~G~~~~~~~~ 120 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD---GMVVKAMSADDRRSFSA-KLTDAGLTTFKQAS 120 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH---TSEEEC--------CEE-EECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC---CCEEeecCCCCCCeEEE-EEChhHHHHHHHHH
Confidence 3566788888884 32 2378999999999999999999999997 4555532 225 79999999999887
Q ss_pred HHHHHHH
Q psy3760 72 IIMQEIE 78 (306)
Q Consensus 72 ~il~~~~ 78 (306)
+....+.
T Consensus 121 ~~~~~~~ 127 (160)
T 3boq_A 121 EAHNRIL 127 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 141
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=97.90 E-value=3.8e-05 Score=56.20 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=59.3
Q ss_pred CchhhHHHHHHHHHh--cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQ--NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIE 71 (306)
Q Consensus 1 m~~~~l~~f~~v~~~--~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~ 71 (306)
++..++.++..+.+. +.+.+.-|+.++++++++|+.|++||+. -|+.|.. ..+ .||+.|+.++..+.
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~---GlV~r~~~~~DrR~~~l-~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK---GLISRQTCASDRRAKRI-KLTEKAEPLIAEME 126 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT---TSEEEC--------CEE-EECGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC---CCEEeeCCCCCCCeeEE-EECHHHHHHHHHHH
Confidence 356788888888872 2378999999999999999999999985 4555542 344 79999999999988
Q ss_pred HHHHHHHH
Q psy3760 72 IIMQEIEG 79 (306)
Q Consensus 72 ~il~~~~~ 79 (306)
+....+..
T Consensus 127 ~~~~~~~~ 134 (166)
T 3deu_A 127 EVIHKTRG 134 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776544
No 142
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=97.90 E-value=9.3e-06 Score=58.58 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=57.0
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .+.+.-|+.+++|++++|+.|++||+.= |+.|. ...+ .||+.|+.++..+..
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~g---lv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~~ 120 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAG---LVTRTRAASDERQVII-ALTETGRALRSKAGA 120 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEC-------CEE-EECHHHHHGGGGSTT
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCC---CEeecCCcccCCeeEe-eECHHHHHHHHHHHH
Confidence 3556788888888755 1456669999999999999999999873 33432 2345 799999999988887
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 121 ~~~~~~~ 127 (153)
T 2pex_A 121 VPEQVFC 127 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7766544
No 143
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=97.89 E-value=0.00049 Score=56.04 Aligned_cols=205 Identities=12% Similarity=0.091 Sum_probs=119.0
Q ss_pred cCCCCcEEEEecccchhhhh----HHHHHHHHHhCCCcEEEEEe-CChhHHHHHHHcCCeeEEEEcc-ccCC---CCCce
Q psy3760 89 AYDTGNLTIATTHTQARYAL----PKIIKEFTIQFPKVKLSLLQ-GNPKQITEMIRNDQADIAIVTE-ILSP---SDKLI 159 (306)
Q Consensus 89 ~~~~~~l~I~~~~~~~~~~l----~~~l~~~~~~~p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~-~~~~---~~~~~ 159 (306)
.....+|+||+.+.....-+ .+++..+.++. ++.+++.. .+...+++.|.+|++|+++... .... ..+..
T Consensus 10 ~~~~~~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~l-G~~ve~~~~~~~~~~i~aL~~G~vDia~~~~~~~~~~~~~~~~~ 88 (321)
T 3p7i_A 10 EEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKL-GVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQ 88 (321)
T ss_dssp ----CCEEEEECCSSCHHHHHHHHHHHHHHHHHHH-TSCEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEE
T ss_pred hhcCCcEEEEEecCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEecCCHHHHHHHHHcCCCcEEEEChHHHHHHHHhcCCE
Confidence 34567899999887655533 44556666654 78888875 6788899999999999998631 1000 11211
Q ss_pred ee--cc-----ccceEEEEecCCCCCCCCCCcChhhh----cCCCeEeecCCCCcHHHHHHH--HHhCCCcee---EEEE
Q psy3760 160 SI--PC-----YQWEYVIIVPLDHPLLLLNSISLKEI----SNYPLITYDLSFSGRIKLDRE--FSLQKLTPY---IVLE 223 (306)
Q Consensus 160 ~~--~l-----~~~~~~~v~~~~~~l~~~~~i~~~dl----~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~ 223 (306)
.. +. .....+++++++.| .-+++|| .+..+.....+......+... +...|+.+. .+ .
T Consensus 89 ~~a~~~~~~g~~~y~~~lvv~~ds~-----i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v-~ 162 (321)
T 3p7i_A 89 VFAQTVAADGSPGYWSVLIVNKDSP-----INNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRT-V 162 (321)
T ss_dssp EEEEEEETTCCSSBCEEEEEETTCS-----CCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEE-E
T ss_pred EEEEEeccCCCcceEEEEEEECCCC-----CCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceee-e
Confidence 11 10 11235788888865 2378999 777665444443333333333 367787753 23 4
Q ss_pred ecCHHHHHHHHHhc-cceeeeecceeccc-c-----cCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhh
Q psy3760 224 TINSDIIKTYVELR-MGIGIIASIAFDSN-R-----DKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLN 296 (306)
Q Consensus 224 ~~~~~~~~~~v~~g-~gi~~~p~~~~~~~-~-----~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 296 (306)
..+...++..+.+| .-.++.+...+..+ . .++++.+.-....+ .+.++++++.. ....+++-+.|.+..+
T Consensus 163 ~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p--~~~i~~~k~~~-~~l~~~l~~aL~~~~~ 239 (321)
T 3p7i_A 163 NAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIP--GDPIVWRKNLS-ETTKDKIYDFFMNYGK 239 (321)
T ss_dssp ECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBC--CCEEEEETTSC-HHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEEcCCCC--CCceeeeCCCC-HHHHHHHHHHHHhcCC
Confidence 66777888888888 34444554443333 2 35677664333222 34566777643 4556667777766655
Q ss_pred HHHHHhh
Q psy3760 297 RKFINKI 303 (306)
Q Consensus 297 ~~~~~~~ 303 (306)
....+++
T Consensus 240 d~~~~~~ 246 (321)
T 3p7i_A 240 TPEEKAV 246 (321)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 4444443
No 144
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=97.89 E-value=9.8e-05 Score=48.15 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3760 8 FVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKKIGKE 86 (306)
Q Consensus 8 ~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~ 86 (306)
++..+...- +.+.-|+.+|+|.+++++-+..|++. -|..+..+++ .+|+.|+.++...+.+...+..+.+.-+.
T Consensus 13 IL~~i~~~~-~~t~La~~~~ls~~~~~~~l~~L~~~---GLI~~~~~~~-~LT~kG~~~l~~l~~~~~~l~~l~~~e~~ 86 (95)
T 1r7j_A 13 ILEACKSGS-PKTRIMYGANLSYALTGRYIKMLMDL---EIIRQEGKQY-MLTKKGEELLEDIRKFNEMRKNMDQLKEK 86 (95)
T ss_dssp HHHHHTTCB-CHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEETTEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHhCcCHHHHHHHHHHHHHC---CCeEEECCee-EEChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444335 89999999999999999999999984 5778888888 79999999999988887777766544433
No 145
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=97.87 E-value=4.5e-05 Score=58.21 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=50.1
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-CCccccCHhHHHHHHHHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-KRIRGLTKPGQAILRSIEIIMQEIEGLK 81 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-~~~~~lT~~G~~l~~~a~~il~~~~~~~ 81 (306)
+.+.-|+.|++|+|++|+.|++||+. -|+.|.. +++ .||+.|+.+...+.+.-..++...
T Consensus 22 ~~~~lA~~l~vs~~tvs~~l~~Le~~---GlV~r~~~~~i-~LT~~G~~~~~~~~~~h~~~e~~l 82 (214)
T 3hrs_A 22 TNKEIAQLMQVSPPAVTEMMKKLLAE---ELLIKDKKAGY-LLTDLGLKLVSDLYRKHRLIEVFL 82 (214)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEETTTEE-EECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHC---CCEEEecCCCe-EECHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999987 4677776 556 899999999888887666555544
No 146
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=97.87 E-value=3.3e-05 Score=56.04 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=57.7
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .+.+.-|+.+++++|++|+.|++||+. | |+.|. ...+ .||+.|+.++..+.+
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-G--lv~r~~~~~DrR~~~l-~LT~~G~~~~~~~~~ 123 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDE-G--YVFRQRDEKDRRSYRV-FLTEKGKKLEPDMKK 123 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEEECC---CCEEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEEEecCCCCCCeeEE-EECHHHHHHHHHHHH
Confidence 3456778888887765 256777999999999999999999985 4 44443 2234 799999999999888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 124 ~~~~~~~ 130 (159)
T 3s2w_A 124 IASEWGE 130 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 147
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=97.87 E-value=0.0004 Score=53.49 Aligned_cols=198 Identities=14% Similarity=0.084 Sum_probs=115.5
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEe-CChhHHHHHHHcCCeeEEEEccccCC-----CCCceeecc--
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEILSP-----SDKLISIPC-- 163 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~~~-----~~~~~~~~l-- 163 (306)
..+|+||+++.....++.. +....+.. ++.++++. .+.......|.+|++|+.+..+.+.- ..+.....+
T Consensus 3 ~~~i~VG~~~~p~~~i~~~-v~~~l~k~-Gi~veiv~F~dy~~pN~AL~~G~iD~n~fQh~pyl~~~~k~~g~~Lv~v~~ 80 (246)
T 4ef1_A 3 DSVLKVGASPVPHAEILEH-VKPLLEKE-GVKLEVTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGA 80 (246)
T ss_dssp CEEEEEEECTTTHHHHHHH-HHHHHHHT-TEEEEEEECSSSSHHHHHHHHTSCSEEEEEEHHHHHHHHHHHTCCEEEEEE
T ss_pred CcEEEEEEeCCChHHHHHH-HHHHHHhc-CCEEEEEEeCCchhHHHHHHCCCCCEEecCCHHHHHHHHHHCCCCEEEEee
Confidence 3579999998755555544 44444443 99999988 45567788999999999997532111 123333333
Q ss_pred -ccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCc-------------------e-eEEE
Q psy3760 164 -YQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLT-------------------P-YIVL 222 (306)
Q Consensus 164 -~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~ 222 (306)
..+++.++ ++. --+++||.+-.-|..+.+.....+....|+..|+- | +..+
T Consensus 81 ~~~~p~glY-S~k-------iksl~dL~~Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~ 152 (246)
T 4ef1_A 81 IHLEPVGLY-SKK-------YKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKF 152 (246)
T ss_dssp EEECCCEEE-CSS-------CSSGGGSCTTCEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEETTCCEE
T ss_pred ccccceEEe-cCC-------CCCHHHcCCCCEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCCCccEE
Confidence 33455554 222 34889997444444444444445566788888871 1 1233
Q ss_pred --EecCHHHHHHHHHhc--cceeeeecceecccccC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhh
Q psy3760 223 --ETINSDIIKTYVELR--MGIGIIASIAFDSNRDK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLN 296 (306)
Q Consensus 223 --~~~~~~~~~~~v~~g--~gi~~~p~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 296 (306)
+++. ..+.+.+..| ++..+-+.+....--.+ +-..+ ++....+-..++++++...+|.+++|++.+++.--
T Consensus 153 ~~el~a-aql~~al~dg~vDaavin~n~a~~agl~p~~dal~~--E~~~~~y~n~i~vr~~~~~~~~~k~lv~~~~s~~v 229 (246)
T 4ef1_A 153 NHESDP-AIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIAL--EKESSPYANIIAVRKEDENNENVKKLVKVLRSKEV 229 (246)
T ss_dssp EEEECG-GGHHHHHHTTCSSEEEECHHHHHHTTCCHHHHCSEE--CSCCGGGCEEEEEEGGGTTCHHHHHHHHHHHSHHH
T ss_pred eeecCH-HHHHHHhccccccEEEEechHHHHcCCCCccCceEE--cCCCCCeEEEEEEeccccCCHHHHHHHHHHcCHHH
Confidence 4444 4555556663 44444444444331111 11122 22223445567788888889999999999877655
Q ss_pred HHHHHh
Q psy3760 297 RKFINK 302 (306)
Q Consensus 297 ~~~~~~ 302 (306)
+.++++
T Consensus 230 ~~~i~~ 235 (246)
T 4ef1_A 230 QDWITK 235 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 148
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.86 E-value=5.4e-05 Score=53.94 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=56.5
Q ss_pred CchhhHHHHHHH-HHh-cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHH
Q psy3760 1 MNLHQFRFVREA-VRQ-NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIE 71 (306)
Q Consensus 1 m~~~~l~~f~~v-~~~-~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~ 71 (306)
++..++.++..+ .+. +.|.+.-|+.+++|+|++|+.|++||+. | |+.|. ...+ .||+.|+.++..+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~-g--lv~r~~~~~d~R~~~~-~lT~~G~~~~~~~~ 110 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ-G--LVRRLAVAEDRRAKHI-VLTPKADVLIADIE 110 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEECCBTTBCSCEE-EECTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC-C--CeeecCCCcccCeeee-EECHhHHHHHHHHH
Confidence 345678888888 432 2379999999999999999999999986 3 33332 2335 79999999999887
Q ss_pred HHHHHHHH
Q psy3760 72 IIMQEIEG 79 (306)
Q Consensus 72 ~il~~~~~ 79 (306)
.....+..
T Consensus 111 ~~~~~~~~ 118 (146)
T 2fbh_A 111 AIAASVRN 118 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665543
No 149
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=97.84 E-value=0.00011 Score=53.38 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=58.1
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.| -+.+.-|+.++++++++|+.|++||+. | |+.|.. ..+ .||+.|+.++..+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-G--lv~r~~~~~DrR~~~l-~LT~~G~~~~~~~~~ 119 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLAN-G--WIEKAPDPTHGRRILV-TVTPSGLDKLNQCNQ 119 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHT-T--SEEEEECCSSSCCEEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-c--CeEecCCCCcCCeeEe-EECHhHHHHHHHHHH
Confidence 3556788888888744 378899999999999999999999985 3 444431 234 899999999998888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 120 ~~~~~~~ 126 (162)
T 3k0l_A 120 VVQQLEA 126 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 150
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=97.84 E-value=0.00057 Score=55.41 Aligned_cols=203 Identities=12% Similarity=0.076 Sum_probs=119.2
Q ss_pred CCcEEEEecccchhhhh----HHHHHHHHHhCCCcEEEEEe-CChhHHHHHHHcCCeeEEEEccccC----CCCCceee-
Q psy3760 92 TGNLTIATTHTQARYAL----PKIIKEFTIQFPKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEILS----PSDKLISI- 161 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l----~~~l~~~~~~~p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~~----~~~~~~~~- 161 (306)
..+|+||+.+......+ .+++..+.++. ++.+++.. .+...+++.|.+|++|+++...... ...+....
T Consensus 3 ~~~l~iG~~p~~~p~~~~~~~~~l~~~l~k~l-G~~ve~~~~~~~~~~i~al~~G~vDi~~~~~~~~~~~~~~~~~~~~a 81 (310)
T 3n5l_A 3 QPVINFGIISTESSQNLKSIWEPFLKDMSQQT-GYQVKAFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFA 81 (310)
T ss_dssp CCEEEEEECCSSCHHHHHHHHHHHHHHHHHHH-SSEEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEE
T ss_pred CcEEEEEEecCCCHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCCHHHHHHHHHcCCCCEEEECcHHHHHHHHhcCCeEEE
Confidence 45799999987765433 34556666654 78999885 5778899999999999998641100 01112111
Q ss_pred -cc-----ccceEEEEecCCCCCCCCCCcChhhh----cCCCeEeecCCCCcHHHHHHH--HHhCCCce----eEEEEec
Q psy3760 162 -PC-----YQWEYVIIVPLDHPLLLLNSISLKEI----SNYPLITYDLSFSGRIKLDRE--FSLQKLTP----YIVLETI 225 (306)
Q Consensus 162 -~l-----~~~~~~~v~~~~~~l~~~~~i~~~dl----~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~ 225 (306)
+. .....+++++++.| .-+++|| .+..+.....+......+... +...|+.+ ..+ ...
T Consensus 82 ~~~~~~g~~~~~~~lvv~~ds~-----i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v-~~g 155 (310)
T 3n5l_A 82 QTVAASGAPGYWSLLIANKDSK-----IDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRT-LNS 155 (310)
T ss_dssp EEEETTCCSEEEEEEEEETTCS-----CCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEE-EEC
T ss_pred EEeccCCCcceEEEEEEECCCC-----CCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhcccc-ccC
Confidence 10 11235788888875 2378999 777665544444333333332 36778764 334 467
Q ss_pred CHHHHHHHHHhc-cceeeeecceeccc-cc-----CCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHH
Q psy3760 226 NSDIIKTYVELR-MGIGIIASIAFDSN-RD-----KNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 226 ~~~~~~~~v~~g-~gi~~~p~~~~~~~-~~-----~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (306)
+...++..+.+| .-.++++...+..+ .. +.++.+......+ .+.++++++.. ....+++-+.+.+..+..
T Consensus 156 ~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p--~~~i~~~~~~~-~~l~~~l~~al~~~~~d~ 232 (310)
T 3n5l_A 156 SHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIP--GDPLVWRNNLS-DEQKNKLRDFFFKYGANA 232 (310)
T ss_dssp CHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEE--CCEEEEETTSC-HHHHHHHHHHHHHCCCSH
T ss_pred CHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECCCCC--CCcEEEECCCC-HHHHHHHHHHHHhcCCCh
Confidence 777788888888 44444554444333 22 4666654332222 33566777643 445666666666665544
Q ss_pred HHHhhh
Q psy3760 299 FINKIL 304 (306)
Q Consensus 299 ~~~~~~ 304 (306)
..++++
T Consensus 233 ~~~~~l 238 (310)
T 3n5l_A 233 EQKKVL 238 (310)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 444443
No 151
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=97.82 E-value=5.3e-05 Score=54.59 Aligned_cols=68 Identities=10% Similarity=0.213 Sum_probs=54.4
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEe------c-C--CCccccCHhHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIR------H-G--KRIRGLTKPGQAILRSIE 71 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R------~-~--~~~~~lT~~G~~l~~~a~ 71 (306)
+..++.++..+.+.+ -+.+.-|+.+++|+|++|+.|++||+. -|+.| . + ..+ .||+.|+.++..+.
T Consensus 40 t~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~---Glv~r~~~~~~~d~R~~~~-~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 40 TIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISL---GLVVKLNKTIPNDSMDLTL-KLSKKGEDLSKRST 115 (154)
T ss_dssp CHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEESCC--CTTCTTCEE-EECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEecCcCCCCCCceeEe-EECHHHHHHHHHHH
Confidence 456788888888754 268999999999999999999999995 45555 1 1 234 79999999999888
Q ss_pred HH
Q psy3760 72 II 73 (306)
Q Consensus 72 ~i 73 (306)
..
T Consensus 116 ~~ 117 (154)
T 2qww_A 116 AN 117 (154)
T ss_dssp SC
T ss_pred hh
Confidence 77
No 152
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=97.80 E-value=0.00012 Score=52.56 Aligned_cols=74 Identities=23% Similarity=0.344 Sum_probs=56.8
Q ss_pred chhhHHHHHHHHHhc--CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN--FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~--~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~ 72 (306)
+..++.++..+.+.+ .+.+.-|+.+++++|++|+.|++||+. | |+.|.. ..+ .||+.|+.++..+.+
T Consensus 30 t~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~-G--lV~R~~~~~DrR~~~l-~LT~~G~~~~~~~~~ 105 (151)
T 4aik_A 30 TQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEK-G--LITRHTSANDRRAKRI-KLTEQSSPIIEQVDG 105 (151)
T ss_dssp CHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT-T--SEEEEECSSCTTCEEE-EECGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhC-C--CeEeecCCCCCcchhh-hcCHHHHHHHHHHHH
Confidence 456788888887643 134678999999999999999999983 4 455432 234 899999999999888
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+..
T Consensus 106 ~~~~~~~ 112 (151)
T 4aik_A 106 VISSTRK 112 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 153
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=97.77 E-value=0.00021 Score=56.20 Aligned_cols=196 Identities=11% Similarity=0.053 Sum_probs=116.8
Q ss_pred CCcEEEEecccch-----------------hhhhHHHHHHHHHhCCCcEEEEEe-------------CChhHHHHHHHcC
Q psy3760 92 TGNLTIATTHTQA-----------------RYALPKIIKEFTIQFPKVKLSLLQ-------------GNPKQITEMIRND 141 (306)
Q Consensus 92 ~~~l~I~~~~~~~-----------------~~~l~~~l~~~~~~~p~~~i~~~~-------------~~~~~~~~~l~~~ 141 (306)
.++|+||+....+ ..+...++..+.++. ++.+++.. .+...++..|.+|
T Consensus 3 ~~~l~v~~~~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~l-g~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g 81 (259)
T 3g3k_A 3 NRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHL-GFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH 81 (259)
T ss_dssp CCCEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHH-TCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTT
T ss_pred CcEEEEEEecCCCeEEEeecccccCCCceeeeEHHHHHHHHHHHc-CCeEEEEECCCCCcCcccCCCCcchHHHHHHhcC
Confidence 4578888854311 345667777776664 66777764 4678899999999
Q ss_pred CeeEEEEccccC--CCCCce-eeccccceEEEEecCCCCCCCCCCcChhhhcCCCe--EeecCCCCcHHHHHHHHHhCCC
Q psy3760 142 QADIAIVTEILS--PSDKLI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPL--ITYDLSFSGRIKLDREFSLQKL 216 (306)
Q Consensus 142 ~~Di~i~~~~~~--~~~~~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~--i~~~~~~~~~~~~~~~~~~~~~ 216 (306)
++|+++...... ....+. +.+++....+++++++.+ .-+++||.+..- +....+.. ....+...+.
T Consensus 82 ~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~-----i~~~~dL~g~~~~~ig~~~~~~----~~~~~~~~~~ 152 (259)
T 3g3k_A 82 KADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTP-----IDSADDLAKQTKIEYGAVEDGA----TMTFFKRSKI 152 (259)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSS-----CCSHHHHHTCSSSEEEEETTSH----HHHHHHHCCS
T ss_pred cccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcc-----ccCHHHhccCCCceEEEecCcH----HHHHHhhccc
Confidence 999998632211 122333 468888999999998875 237999988762 22222222 2334444333
Q ss_pred ce-----------eEEEEecCHHHHHHHHHhccceeeeecceeccc---ccCCceeeecCCCCccceEEEEEeCCccccH
Q psy3760 217 TP-----------YIVLETINSDIIKTYVELRMGIGIIASIAFDSN---RDKNLRSISASHLFGTTISRVIIKQGTYLRS 282 (306)
Q Consensus 217 ~~-----------~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~---~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (306)
.. .....+++...++.++.+|. .+++.+.....+ ...++..++.. .....+++..+++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~a~~k~~~--- 226 (259)
T 3g3k_A 153 STYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIGGL--IDSKGYGVGTPMGSP--- 226 (259)
T ss_dssp HHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEESSC--SSCEEECCEEETTCT---
T ss_pred hhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEeccc--ceeeeEEEEECCCCc---
Confidence 21 12346789999999999998 666555333222 24556555433 234577888888753
Q ss_pred HHHHHHHHHhHHhhHHHHHhh
Q psy3760 283 YVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~~~~ 303 (306)
....|=+.|.+.-+....+++
T Consensus 227 l~~~in~~l~~l~~~G~~~~i 247 (259)
T 3g3k_A 227 YRDKITLAILKLQEQGKLHMM 247 (259)
T ss_dssp HHHHHHHHHHHHHHTC-CHHH
T ss_pred cHHHHHHHHHHHHhcChHHHH
Confidence 444444444444333333433
No 154
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=97.77 E-value=7.2e-05 Score=52.15 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCHHHHHHHh-CCCchHHHHHHHHHHHHcCceeEEecC-----CC-ccccCHhHHHHHHHHHHHHHHHHH
Q psy3760 7 RFVREAVRQNFNLTEAAKAL-YTSQPGVSKAIIELEEELSIDIFIRHG-----KR-IRGLTKPGQAILRSIEIIMQEIEG 79 (306)
Q Consensus 7 ~~f~~v~~~~~s~~~aA~~l-~isq~~~s~~i~~LE~~lg~~Lf~R~~-----~~-~~~lT~~G~~l~~~a~~il~~~~~ 79 (306)
.++..+.+.+.+++.-|+.+ ++|++++|++|++||+. -|+.|.. +. .+.||+.|+.+++....+.+-.++
T Consensus 39 ~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~---GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~l~~w~~~ 115 (131)
T 1yyv_A 39 LILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQD---GFLNRVSYPVVPPHVEYSLTPLGEQVSDXVAALADWIEL 115 (131)
T ss_dssp HHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH---TCEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHC---CcEEEEecCCCCCeEEEEECccHHHHHHHHHHHHHHHHH
Confidence 34444443323899999999 79999999999999985 3444432 21 238999999999999888666665
Q ss_pred HHHHHH
Q psy3760 80 LKKIGK 85 (306)
Q Consensus 80 ~~~~~~ 85 (306)
....+.
T Consensus 116 ~~~~~~ 121 (131)
T 1yyv_A 116 NLPQVL 121 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 155
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=97.76 E-value=6.9e-05 Score=54.89 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=56.0
Q ss_pred CchhhHHHHHHHHHh---cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQ---NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSI 70 (306)
Q Consensus 1 m~~~~l~~f~~v~~~---~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a 70 (306)
++..++.++..+.+. +-+.+.-|+.++++++++|+.|++||+. | |+.|.. ..+ .||+.|+.++..+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-G--lv~r~~~~~DrR~~~l-~LT~~G~~~~~~~ 119 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR-G--LVLRTRKPENRRVVEV-ALTDAGLKLLKDL 119 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT-T--SEEEEEETTEEEEEEE-EECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC-C--CEeecCCCCCCCeeEe-EECHHHHHHHHHH
Confidence 355678888888874 3389999999999999999999999985 4 444432 245 8999999999998
Q ss_pred HHHHHHHHH
Q psy3760 71 EIIMQEIEG 79 (306)
Q Consensus 71 ~~il~~~~~ 79 (306)
......+..
T Consensus 120 ~~~~~~~~~ 128 (168)
T 3u2r_A 120 EEPVRQCHE 128 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887666543
No 156
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=97.73 E-value=7.7e-05 Score=53.31 Aligned_cols=71 Identities=7% Similarity=0.159 Sum_probs=52.8
Q ss_pred chhhHHHHHHHHH--hc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVR--QN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIE 71 (306)
Q Consensus 2 ~~~~l~~f~~v~~--~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~ 71 (306)
+..++.++..+.. .| -+.+.-|+.+++++|++|+.|++||+. -|+.|.. ..+ .||+.|+.+++.+.
T Consensus 34 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~---Glv~r~~~~~DrR~~~l-~LT~~G~~~~~~~~ 109 (147)
T 4b8x_A 34 TFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRS---GLVAKRPNPNDGRGTLA-TITDKGREVVEAAT 109 (147)
T ss_dssp CHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEEECC----CEEE-EECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC---CCEEEeecCCcCceeEE-EECHHHHHHHHHHH
Confidence 4567777777653 32 267899999999999999999999984 3455432 224 79999999998877
Q ss_pred HHHHH
Q psy3760 72 IIMQE 76 (306)
Q Consensus 72 ~il~~ 76 (306)
+....
T Consensus 110 ~~~~~ 114 (147)
T 4b8x_A 110 RDLMA 114 (147)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 157
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=97.73 E-value=7.4e-05 Score=52.89 Aligned_cols=75 Identities=16% Similarity=0.308 Sum_probs=57.0
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ -+.+.-|+.+++++|++|+.|++||+. -|+.|. ...+ .||+.|+.++..+.+
T Consensus 34 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~---Glv~r~~~~~D~R~~~~-~LT~~G~~~~~~~~~ 109 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKK---DYVVRTREEKDERNLQI-SLTEQGKAIKSPLAE 109 (140)
T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEEC-------CEE-EECHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC---CCeEecCCCCCcceeee-eEChHHHHHHHHHHH
Confidence 3556777888877544 257888999999999999999999985 455543 2344 899999999999887
Q ss_pred HHHHHHH
Q psy3760 73 IMQEIEG 79 (306)
Q Consensus 73 il~~~~~ 79 (306)
....+.+
T Consensus 110 ~~~~~~~ 116 (140)
T 3hsr_A 110 ISVKVFN 116 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 158
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=97.72 E-value=0.00011 Score=52.37 Aligned_cols=69 Identities=22% Similarity=0.206 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC------CCccccCHhHHHHHHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG------KRIRGLTKPGQAILRSIEIIMQEIE 78 (306)
Q Consensus 6 l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~------~~~~~lT~~G~~l~~~a~~il~~~~ 78 (306)
+.++..+.+...+++.-|+.+++|++++|++|++||+. -|+.|.. ..+ .||+.|+.+++....+.+-.+
T Consensus 27 l~IL~~L~~g~~~~~eLa~~lgis~~tls~~L~~Le~~---GlI~r~~~~~d~~~~y-~LT~~G~~l~~~l~~l~~w~~ 101 (146)
T 2f2e_A 27 MLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEH---GVMVAVPAESGSHQEY-RLTDKGRALFPLLVAIRQWGE 101 (146)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHT---TSEEEEECSSSSCEEE-EECHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHC---CCEEEEecCCCCeEEE-EECchHHHHHHHHHHHHHHHH
Confidence 33444444433499999999999999999999999974 3445442 244 899999999988777644433
No 159
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=97.70 E-value=0.00016 Score=51.55 Aligned_cols=66 Identities=23% Similarity=0.161 Sum_probs=53.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIE 71 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~ 71 (306)
+..++.++..+.+.+.|.+.-|+.+++|+|++|+.|++||+. | |+.|. ...+ .||+.|..++..+.
T Consensus 37 t~~~~~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~-G--lv~r~~~~~d~R~~~~-~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 37 TNTQEHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKE-G--MLETSKDSKDARVIFY-QLTDLARPIAEEHH 109 (146)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEC----------CC-EECGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CeEeccCCCCCceeEE-EECHhHHHHHHHHH
Confidence 556788888888776799999999999999999999999984 4 44442 2445 89999999999997
No 160
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.70 E-value=0.00015 Score=47.80 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHh-cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhHH-HHHHHHH
Q psy3760 4 HQFRFVREAVRQ-NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPGQ-AILRSIE 71 (306)
Q Consensus 4 ~~l~~f~~v~~~-~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G~-~l~~~a~ 71 (306)
.+++++..+.+. +.|++.-|+.+++|+|++|++|+.|| +.|.--..+.++.. +.+|+.|. .++....
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~-~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~ 94 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR-DEGLIDSQRDAQRILYSIKNEAVNAIIATLK 94 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH-HTTSEEEEECSSCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH-HCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence 456667677665 23889999999999999999999998 57877777765543 27899874 4444433
No 161
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=97.70 E-value=0.00028 Score=52.73 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=57.7
Q ss_pred CchhhHHHHHHHHH---hcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec---C--CCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVR---QNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH---G--KRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~---~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~---~--~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+ .+-+.+.-|+.+++|+|++|+.|++||+. |.---.++ + ..+ .||+.|+.++..+..
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~-GlV~r~~~~~DrR~~~l-~LT~~G~~~~~~~~~ 116 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN-GYVDVIPSPHDKRAINV-KVTDLGKKVMVTCSR 116 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEEECSSCSSCEEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeccCCCCCCeeEE-EECHHHHHHHHHHHH
Confidence 35677888888885 23489999999999999999999999974 43333222 1 234 899999999998888
Q ss_pred HHHHHH
Q psy3760 73 IMQEIE 78 (306)
Q Consensus 73 il~~~~ 78 (306)
....+.
T Consensus 117 ~~~~~~ 122 (189)
T 3nqo_A 117 TGINFM 122 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 162
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=97.68 E-value=0.00025 Score=45.60 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=55.4
Q ss_pred chhhHHHHHHHHH--hcCCHHHHHH-HhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVR--QNFNLTEAAK-ALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 2 ~~~~l~~f~~v~~--~~~s~~~aA~-~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il 74 (306)
+..++-.+..+++ .- |.+.-|+ .+++..+++||.++.||.. |.- +.++..+ .+|+.|+.+++.+.++-
T Consensus 15 ~~~QfsiL~~L~~~~~~-t~~~Lae~~l~~drstvsrnl~~L~r~-GlV--e~~~~Dl-~LT~~G~~~l~~a~~~W 85 (95)
T 1bja_A 15 NEKTATILITIAKKDFI-TAAEVREVHPDLGNAVVNSNIGVLIKK-GLV--EKSGDGL-IITGEAQDIISNAATLY 85 (95)
T ss_dssp CHHHHHHHHHHHHSTTB-CHHHHHHTCTTSCHHHHHHHHHHHHTT-TSE--EEETTEE-EECHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCC-CHHHHHHHHhcccHHHHHHHHHHHHHC-CCe--ecCCCCe-eeCHhHHHHHHHHHHHH
Confidence 4556667777766 45 8888999 9999999999999999988 532 2556667 79999999999998887
No 163
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=97.68 E-value=8.8e-05 Score=51.46 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCHHHHHHHh-CCCchHHHHHHHHHHHHcCceeEEecC-----CC-ccccCHhHHHHHHHHHHHHHHHHH
Q psy3760 7 RFVREAVRQNFNLTEAAKAL-YTSQPGVSKAIIELEEELSIDIFIRHG-----KR-IRGLTKPGQAILRSIEIIMQEIEG 79 (306)
Q Consensus 7 ~~f~~v~~~~~s~~~aA~~l-~isq~~~s~~i~~LE~~lg~~Lf~R~~-----~~-~~~lT~~G~~l~~~a~~il~~~~~ 79 (306)
.++..+.....+|+.=++.+ +||++++|++|++||+. -|+.|.. +. .++||+.|+.+++....+.+=.++
T Consensus 30 ~IL~~L~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~---GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~ 106 (131)
T 4a5n_A 30 ILFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEAD---GIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGES 106 (131)
T ss_dssp HHHHHHTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT---TSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHhcccCHHHHHHHHHHHHHC---CCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHH
Confidence 34444443333899999999 99999999999999986 4566652 12 238999999999999888765555
Q ss_pred HHHHHHh
Q psy3760 80 LKKIGKE 86 (306)
Q Consensus 80 ~~~~~~~ 86 (306)
-...+..
T Consensus 107 ~~~~~~~ 113 (131)
T 4a5n_A 107 NRDVLES 113 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 164
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=97.65 E-value=0.00012 Score=57.65 Aligned_cols=184 Identities=9% Similarity=0.085 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHhCCCcEEEEEe------------CChhHHHHHHHcCCeeEEEEccccC--CCCCce-eeccccceEEE
Q psy3760 106 YALPKIIKEFTIQFPKVKLSLLQ------------GNPKQITEMIRNDQADIAIVTEILS--PSDKLI-SIPCYQWEYVI 170 (306)
Q Consensus 106 ~~l~~~l~~~~~~~p~~~i~~~~------------~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~~-~~~l~~~~~~~ 170 (306)
.+...++..+.+.. ++++++.. .+...++..|.+|++|+++...... ....+. +.++.....++
T Consensus 31 G~~~dl~~~i~~~l-g~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~ 109 (265)
T 2v3u_A 31 GFSIDVLDALSNYL-GFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGV 109 (265)
T ss_dssp SHHHHHHHHHHHHH-TCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEE
T ss_pred EEEHHHHHHHHHHc-CCcEEEEEccCCcccccCCCCCcchHHHHHHcCCcCeEEeeeEeehhhhccccccceeeeccEEE
Confidence 45667777777664 78888874 4677899999999999998421111 112232 45777888999
Q ss_pred EecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCcee------------------EEEEecCHHHHHH
Q psy3760 171 IVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY------------------IVLETINSDIIKT 232 (306)
Q Consensus 171 v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 232 (306)
+++++.+ .-+++||. .. +....+......+..++...+..+. ....+++...++.
T Consensus 110 ~~~~~~~-----i~~~~dL~-~~-v~v~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 182 (265)
T 2v3u_A 110 LLRRGTS-----IQSLQDLS-KQ-TDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQ 182 (265)
T ss_dssp EEETTCC-----CCSHHHHH-TC-SSSCEECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHH
T ss_pred EEECCCC-----ccchhhhh-hh-hcEEEEEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHH
Confidence 9988765 34788888 33 2222222222344555555444321 1346789999999
Q ss_pred HHHhccceeeeec-ceeccc--ccC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhh
Q psy3760 233 YVELRMGIGIIAS-IAFDSN--RDK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 233 ~v~~g~gi~~~p~-~~~~~~--~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (306)
++.+|.. +++-. ..+... ..+ .+..++. ......++++.+++.. ....|-+.|.+..+....+++
T Consensus 183 ~l~~G~~-a~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~~~---l~~~in~~l~~l~~~g~~~~i 252 (265)
T 2v3u_A 183 KVKYGNY-AFVWDAAVLEYVAINDPDCSFYTVGN--TVADRGYGIALQHGSP---YRDVFSQRILELQQSGDMDIL 252 (265)
T ss_dssp HHHHSSC-EEEEEHHHHHHHHHHCTTCCEEEEC-----CCEEECCEEETTCT---THHHHHHHHHHHHHHTHHHHH
T ss_pred HHHcCCE-EEEEcchHHHHHHhcCCCccEEEecc--ccCCcceEEEEeCCCc---cHHHHHHHHHHHhhCChHHHH
Confidence 9999987 55443 222222 122 3444432 2234577788888753 444444444443333334443
No 165
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=97.65 E-value=7.4e-05 Score=50.13 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHh-CCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFNLTEAAKAL-YTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEIIMQEI 77 (306)
Q Consensus 6 l~~f~~v~~~~~s~~~aA~~l-~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~il~~~ 77 (306)
+.++..+.+.+.+++.-|+.+ ++|++++|++|++||+. -|+.|.. ..+ .||+.|+.+++....+.+-.
T Consensus 17 ~~IL~~L~~~~~~~~eLa~~l~~is~~tls~~L~~Le~~---GlI~r~~~~~d~r~~~y-~LT~~G~~l~~~~~~l~~w~ 92 (107)
T 2hzt_A 17 XVILXHLTHGKKRTSELKRLMPNITQKMLTQQLRELEAD---GVINRIVYNQVPPKVEY-ELSEYGRSLEGILDMLXAWG 92 (107)
T ss_dssp HHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT---TSEEEEEECSSSCEEEE-EECTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC---CCEEEeecCCCCCeEEE-EECccHHHHHHHHHHHHHHH
Confidence 344555544334899999999 99999999999999985 3444432 234 89999999998877775544
Q ss_pred HH
Q psy3760 78 EG 79 (306)
Q Consensus 78 ~~ 79 (306)
++
T Consensus 93 ~~ 94 (107)
T 2hzt_A 93 AN 94 (107)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 166
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=97.64 E-value=0.00026 Score=54.71 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCH--HHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-CCccccCHhHHHHHHHHHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFNL--TEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-KRIRGLTKPGQAILRSIEIIMQEIEGLK 81 (306)
Q Consensus 6 l~~f~~v~~~~~s~--~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-~~~~~lT~~G~~l~~~a~~il~~~~~~~ 81 (306)
|+++..+.+.|.+. +.-|+.+++|+|++|+.|++||+. -|..|.. +++ .||+.|+.++..+.+....++...
T Consensus 12 L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~---GlV~r~~~~~v-~LT~~G~~~~~~~~~~~~~~e~~l 86 (230)
T 1fx7_A 12 LRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERD---GLLRVAGDRHL-ELTEKGRALAIAVMRKHRLAERLL 86 (230)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEECTTSCE-EECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHC---CCEEEeCCccE-EECHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333255 899999999999999999999986 4666664 455 899999999988887766665544
No 167
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=97.62 E-value=0.0023 Score=48.84 Aligned_cols=201 Identities=9% Similarity=-0.010 Sum_probs=116.3
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccCC-----CCCceeecc-
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILSP-----SDKLISIPC- 163 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~~-----~~~~~~~~l- 163 (306)
...+|+||+++.....++..+-..+.++ -++.++++.. +.......|.+|++|+.+..+.+.- ..++....+
T Consensus 4 ~~~~ikVG~~~~p~~~il~~~~~~l~~k-~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~lv~v~ 82 (237)
T 3k2d_A 4 DTSKVKVGVMAGAEAQVAEVAAKVAKEK-YGLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLTIAG 82 (237)
T ss_dssp CCCCEEEEEETTHHHHHHHHHHHHHHHH-HCCCEEEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHHHHHHHCCCEEEEE
T ss_pred CCceEEEEEeCCChHHHHHHHHHHHHHh-cCCEEEEEEeCChHhHHHHHHcCCCCeeccCCHHHHHHHHHHCCCCEEEEe
Confidence 3468999998875555555454555533 2788888773 5567889999999999988533111 112222222
Q ss_pred --ccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCc------------------e-eEEE
Q psy3760 164 --YQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLT------------------P-YIVL 222 (306)
Q Consensus 164 --~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~ 222 (306)
..+++.++ +++ --+++||.+-.-|..+.+.....+....|+..|+- | +..+
T Consensus 83 ~~~~~p~glY-S~k-------~ksl~dL~~Ga~IaipnD~tN~~RaL~lL~~aGLIkLk~~~~~~~t~~DI~~Npk~lk~ 154 (237)
T 3k2d_A 83 NTFVYPIAGY-SKQ-------VKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENPKNITI 154 (237)
T ss_dssp ECCCCCCEEE-CSS-------CSCSTTCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCSSCCGGGEEECTTCCEE
T ss_pred eecccceEEe-cCC-------CCCHHHhcCCCEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCCCHHHHhCCCCCCEE
Confidence 23444444 222 34788887555566665555555667788888871 1 1123
Q ss_pred EecCHHHHHHHHHhccceeeeecceecccccC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHH
Q psy3760 223 ETINSDIIKTYVELRMGIGIIASIAFDSNRDK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 223 ~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
.--+...+.+.+...++..+-+.+....--.+ +-..+ ++....+-..++++++...+|.+++|++.+++.--+.++
T Consensus 155 ~e~~aaql~r~l~dvD~avin~nya~~agl~p~~dal~~--E~~~~~y~nviavr~~~~d~~~~k~lv~~~~s~~vk~~i 232 (237)
T 3k2d_A 155 MELDAAQLPRSLDDVALSIINTTYASSINLTPEKDGVFV--EDKESPYVNLIVARQDNVQNENVQNFVKAYQTEEVYTAA 232 (237)
T ss_dssp EEECGGGHHHHTTTSSEEEECHHHHGGGTCCHHHHCSEE--CCSSSSCCEEEEEETTTTTSHHHHHHHHHHTSHHHHHHH
T ss_pred EEcCHHHHhhhccCccEEEecccHHHHcCCCcccceeEE--cCCCCCcEEEEEEeccccCCHHHHHHHHHHCCHHHHHHH
Confidence 32333444454555554444444544332111 11122 222223455677888888999999999999776555555
Q ss_pred Hh
Q psy3760 301 NK 302 (306)
Q Consensus 301 ~~ 302 (306)
++
T Consensus 233 ~~ 234 (237)
T 3k2d_A 233 KE 234 (237)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 168
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=97.57 E-value=0.0011 Score=52.78 Aligned_cols=203 Identities=12% Similarity=0.131 Sum_probs=118.4
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEe-C-ChhHHHHHHHcCCeeEEEEc-c------ccCCCC------
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQ-G-NPKQITEMIRNDQADIAIVT-E------ILSPSD------ 156 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~-~-~~~~~~~~l~~~~~Di~i~~-~------~~~~~~------ 156 (306)
...|+||....-....+..++..+.+.. ++++++.. . ++....+.|.+|++|++..+ + ....++
T Consensus 5 ~~~i~ig~~~~~~~~~~~~~~~~~le~~-G~~Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~ 83 (275)
T 1sw5_A 5 SERVVIGSKPFNEQYILANMIAILLEEN-GYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQ 83 (275)
T ss_dssp -CCEEECCCSSHHHHHHHHHHHHHHHHT-TCCEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHH
T ss_pred CCCEEEEcCCCcHHHHHHHHHHHHHHHc-CCcEEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHH
Confidence 3479999988766667778887777766 89999987 4 46788999999999999842 1 101000
Q ss_pred --------------Cceeecc--ccceEEEEecCCCCCCCCCCcChhhhcCCC--eEe-ecCCCCcH-HHHHHHHHhCCC
Q psy3760 157 --------------KLISIPC--YQWEYVIIVPLDHPLLLLNSISLKEISNYP--LIT-YDLSFSGR-IKLDREFSLQKL 216 (306)
Q Consensus 157 --------------~~~~~~l--~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~--~i~-~~~~~~~~-~~~~~~~~~~~~ 216 (306)
++....- ....+.++++++.... ..--+++||.+.. +.. .......+ ..+..+++..|+
T Consensus 84 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~a~~-~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl 162 (275)
T 1sw5_A 84 YIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWAEE-NGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGF 162 (275)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEHHHHHH-HTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTC
T ss_pred HHHHHHHHHhhhcCCeEEeccCCCCCeeEEEEeHHHHHH-cCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCC
Confidence 2222111 2345677777654100 0234789998872 221 11110000 123346667788
Q ss_pred ceeEEEEecCHHHHHHHHHhccceee---eecceecccccCCceeeecCCC-CccceEEEEEeCCccccHHHHHHHHHHh
Q psy3760 217 TPYIVLETINSDIIKTYVELRMGIGI---IASIAFDSNRDKNLRSISASHL-FGTTISRVIIKQGTYLRSYVYSFIKLLS 292 (306)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~g~gi~~---~p~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 292 (306)
.+..+... +...+..++.+|.-.++ -|..... ..+++.+.-+.. .+..+++.+.+++....|.+..|++.+.
T Consensus 163 ~~~~~~~~-~~~~~~~Al~~g~vd~~~~~~p~~~~~---~~~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 163 EFKEVKQM-EPTLMYEAIKNKQVDVIPAYTTDSRVD---LFNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp CCSEEEEC-CGGGHHHHHHTTSCSEEEEETTCHHHH---HTTEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred CcccccCC-CHHHHHHHHHcCCCeEEEEeCCCcchh---cCCeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 76544344 56678889998854443 3444432 246776665542 2345666666766432277778887776
Q ss_pred HHhhHHHH
Q psy3760 293 PKLNRKFI 300 (306)
Q Consensus 293 ~~~~~~~~ 300 (306)
..+.....
T Consensus 239 ~~l~~~~~ 246 (275)
T 1sw5_A 239 DRIDTDTM 246 (275)
T ss_dssp TCCCHHHH
T ss_pred ccCCHHHH
Confidence 55544444
No 169
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.57 E-value=0.0075 Score=49.33 Aligned_cols=199 Identities=9% Similarity=-0.034 Sum_probs=111.9
Q ss_pred CCcEEEEecccchhhhhHHHHHH----HHHhCCCcEEEEEe-CChhHHHHHHHcCCeeEEEEccccC-----CCCCceee
Q psy3760 92 TGNLTIATTHTQARYALPKIIKE----FTIQFPKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEILS-----PSDKLISI 161 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~----~~~~~p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~~-----~~~~~~~~ 161 (306)
...++|++.........+..+.. |.+ .++++++.. .+...+.+.|.+|++|+++...... ....+...
T Consensus 32 ~~~~~i~~~~~~~~~~~~~~~a~~~g~~~~--~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~ 109 (346)
T 3qsl_A 32 KAKVQIAVGGKPLIYYLPLTIAEVKGFFKD--EGLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAF 109 (346)
T ss_dssp CSEEEEEESCTTSGGGHHHHHHHHTTHHHH--TTCEEEEEECSSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEE
T ss_pred CCceEEEecCccchhhhHHHHHHHCCchHh--hCCeEEEEecCChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEE
Confidence 45677766544322233322222 333 378888884 4677889999999999998752211 11222222
Q ss_pred c--cccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCcee-E-EEEecCHHHHHHHHHhc
Q psy3760 162 P--CYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY-I-VLETINSDIIKTYVELR 237 (306)
Q Consensus 162 ~--l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~v~~g 237 (306)
. .......++++++.. ...-+++||.+.++.....+......+..+++..|+.+. + ....++...+..++.+|
T Consensus 110 ~~~~~~~~~~~~v~~~~~---~~i~s~~DL~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G 186 (346)
T 3qsl_A 110 ALQGRAPMIGVGVSKKNL---PGYKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSG 186 (346)
T ss_dssp EESBSSCCEEEEEETTTC---TTCCSGGGGTTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHT
T ss_pred EecccCCCcEEEEecCcc---cCCCChHHcCCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcC
Confidence 1 222356777777651 123478999988776665565555667788899998763 2 34455556778888887
Q ss_pred -cceeeeecceeccc-ccCCceeeecCCC---------CccceEEEEEeCCc--cccHHHHHHHHHHhHHh
Q psy3760 238 -MGIGIIASIAFDSN-RDKNLRSISASHL---------FGTTISRVIIKQGT--YLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 238 -~gi~~~p~~~~~~~-~~~~l~~~~~~~~---------~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~ 295 (306)
.-.++++....... ..+..+.+..... .......++.+++. ..+..+++|++.+.+..
T Consensus 187 ~vDa~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a~ 257 (346)
T 3qsl_A 187 QIDAISNTDPVVSMLETSGDIQIIVDTRTLKDTKEIFGGNMPAGCLYAPQAFVDANPNTAQALTNAIVRAD 257 (346)
T ss_dssp SCSEEEEETTHHHHHHHTTCEEEEEECSSHHHHHHHHSSCCCCEEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CccEEEecchhHHHHHhCCCeEEEEecccccchhhhcCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHH
Confidence 33334454444333 3444444422110 01113344445441 24567888888776554
No 170
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=97.54 E-value=0.013 Score=47.99 Aligned_cols=199 Identities=13% Similarity=0.125 Sum_probs=120.9
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCC---eeEEEEccc----------cCCCC--
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQ---ADIAIVTEI----------LSPSD-- 156 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~---~Di~i~~~~----------~~~~~-- 156 (306)
.++|+|.........+...++..|.+++ +++|++...+..+..+.+..+. .|+.+.... ..+-+
T Consensus 34 ~~~l~v~~~~~~~~~~~~~~~~~f~~~~-gi~V~~~~~~~~~~~~kl~a~~~~~pDv~~~~~~~~~~~~~~g~l~~l~~~ 112 (351)
T 4edp_A 34 GKKLVVSTWGLNEDVLKETVFEPFAKEH-GVEIVLDIGNNSERLTKMKNNPNSQIDITYLAESFAEQGVEAGIFDKLDYS 112 (351)
T ss_dssp --CEEEEECCTTHHHHHHHTHHHHHHHH-TCCEEEEECCHHHHHHHHHHCTTCCCCEEEEEHHHHHHHHHHTCBCCCCGG
T ss_pred CCeEEEEEccCcHHHHHHHHHHHHHHHH-CCEEEEEeCCcHHHHHHHHhcCCCCCCEEEECcHHHHHHHHCCCcccCCch
Confidence 3679998755445667889999999999 9999999999889999998776 999986421 00000
Q ss_pred -----------------CceeeccccceEEEEecCCCCCCCCCCcChhhhcC----CCeEeecCCCCcHHHH-HHHHHhC
Q psy3760 157 -----------------KLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISN----YPLITYDLSFSGRIKL-DREFSLQ 214 (306)
Q Consensus 157 -----------------~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~----~~~i~~~~~~~~~~~~-~~~~~~~ 214 (306)
.+-..|+.....+++.+++. ...+-+++||.+ -..............+ .......
T Consensus 113 ~~~~~~~~~~~~~~~~g~~y~~P~~~~~~~l~ynkd~---~~~p~tw~el~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~ 189 (351)
T 4edp_A 113 KIPNASEMNEKAKSTVEAGYGPAYTLNSIGIVVDPSA---GIEINSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKA 189 (351)
T ss_dssp GCGGGGGBCTTTHHHHHHTSSCEEEEEEEEEEECGGG---CCCCCSGGGGGCGGGTTCEEEECTTSTTHHHHHHHHHHHH
T ss_pred hCCChHHhhHHhhccCCCeeEEEEEeeEEEEEEcCCC---CCCCCCHHHHhChHhcCCeeecCcccccchHHHHHHHHhc
Confidence 11234666677888888885 345679999954 2233333332221111 1111211
Q ss_pred CC-----------------ceeEEEEecCHHHHHHHHHhc-cceeeeecceeccc--ccCCceeeecCCCCccceEEEEE
Q psy3760 215 KL-----------------TPYIVLETINSDIIKTYVELR-MGIGIIASIAFDSN--RDKNLRSISASHLFGTTISRVII 274 (306)
Q Consensus 215 ~~-----------------~~~~~~~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~l~~ 274 (306)
|. .++......+.....+++.+| .++++...+.+... ....+...............+..
T Consensus 190 G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i 269 (351)
T 4edp_A 190 GVDVKTDNGEAAFKELEALKPNVVKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTINI 269 (351)
T ss_dssp TCCHHHHTTHHHHHHHHHHGGGEEEEECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEE
T ss_pred CCCCChhhHHHHHHHHHHHHHhhhcccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEE
Confidence 21 233443456777888888888 44555555544433 23444443222222333445666
Q ss_pred eCCccccHHHHHHHHHHhHH
Q psy3760 275 KQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~ 294 (306)
.++.....++.+|++++.+.
T Consensus 270 ~~~s~~~~~A~~fi~~l~s~ 289 (351)
T 4edp_A 270 NKNSKNKDLAYEFINYALSK 289 (351)
T ss_dssp BTTCSCHHHHHHHHHHHTSH
T ss_pred ECCCCCHHHHHHHHHHhcCH
Confidence 77777788999999999654
No 171
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.53 E-value=0.0026 Score=52.35 Aligned_cols=196 Identities=11% Similarity=0.005 Sum_probs=110.3
Q ss_pred CCcEEEEeccc--------chhhhhHH---HHHHHHHhCCCcEEEE--EeCC--hhHHHHHHHcCCeeEEEEccccC---
Q psy3760 92 TGNLTIATTHT--------QARYALPK---IIKEFTIQFPKVKLSL--LQGN--PKQITEMIRNDQADIAIVTEILS--- 153 (306)
Q Consensus 92 ~~~l~I~~~~~--------~~~~~l~~---~l~~~~~~~p~~~i~~--~~~~--~~~~~~~l~~~~~Di~i~~~~~~--- 153 (306)
.++||||+... .....+.. +...|.+. ++++++ .... ...+.+.|.+|++|+++......
T Consensus 5 ~~~lrig~~~~~~~~~p~~~~~p~~a~~~gl~~~~~~~--G~~v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~~~ 82 (348)
T 3uif_A 5 LKVVRIASVATNVGGKTVYAGSASLVVNGAFPEELRKQ--GIKVEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPIIL 82 (348)
T ss_dssp CEEEEEEEEEEEETTEEEECTHHHHHHHSSHHHHHHHT--TEEEEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHHHH
T ss_pred CceEEEEeeccCCCCccccCcHHHHHHHccHHHHHHhc--CCeEEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHHHH
Confidence 46899999842 11111222 22244443 888888 5442 45678999999999999642211
Q ss_pred --CCCCcee--eccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCcee-EEEEecCHH
Q psy3760 154 --PSDKLIS--IPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY-IVLETINSD 228 (306)
Q Consensus 154 --~~~~~~~--~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 228 (306)
....+.. .........++++++.+ .-+++||.+.++... .+......+..++...|+.+. +.+..-+..
T Consensus 83 ~~~g~~~~~v~~~~~~~~~~lvv~~~s~-----i~s~~DLkGk~I~v~-~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~ 156 (348)
T 3uif_A 83 NASKPTVQLVAPWGTTSNSYLVVPKNST-----AKSIKDLKGKKIALH-RGRPWELAFSNLLQSEGLTFKDFKIVNVNPQ 156 (348)
T ss_dssp HHHSCCEEEEEECCCCCCCEEEEETTCC-----CCSGGGGTTSEEEEC-TTSTHHHHHHHHHHHTTCCGGGSEEECCCHH
T ss_pred HhCCCCEEEEEeccCCCceEEEEECCCC-----CCCHHHcCCCEEEec-CCChHHHHHHHHHHHcCCCHHHeEEEECCHH
Confidence 1112222 22334567788887765 347899999877664 555555667788899998753 233333677
Q ss_pred HHHHHHHhccc-eeeeecceecccccCCceee-ecCCCC--ccceEEEEEeCCc--cccHHHHHHHHHHhHHh
Q psy3760 229 IIKTYVELRMG-IGIIASIAFDSNRDKNLRSI-SASHLF--GTTISRVIIKQGT--YLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 229 ~~~~~v~~g~g-i~~~p~~~~~~~~~~~l~~~-~~~~~~--~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~ 295 (306)
.+..++.+|.. .++.+.........+..+.+ ...+.. ......++.+++- ..+..+++|++.+.+..
T Consensus 157 ~~~~al~~G~vDa~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a~ 229 (348)
T 3uif_A 157 VGAAALASGTVDGFFSLFDSYILEDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKSV 229 (348)
T ss_dssp HHHHHHHHTSSSEEEESTTHHHHHHTTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEechHHHHHHhcCCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHHH
Confidence 88888888832 23444433322133332322 222211 1123344555432 24567788887776654
No 172
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.49 E-value=0.0032 Score=51.73 Aligned_cols=198 Identities=10% Similarity=0.036 Sum_probs=106.4
Q ss_pred CCCcEEEEecccchhhhhHHHHHHH-HH--hCCCcEEEEEeCC-hhHHHHHHHcCCeeEEEEcccc-----CCCCCceee
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEF-TI--QFPKVKLSLLQGN-PKQITEMIRNDQADIAIVTEIL-----SPSDKLISI 161 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~-~~--~~p~~~i~~~~~~-~~~~~~~l~~~~~Di~i~~~~~-----~~~~~~~~~ 161 (306)
...+|+||..+... ..+-.+..- .. ..-++.+++.... ...+.+.|.+|++|+++..... .....+...
T Consensus 50 ~~~~l~vg~~~~~~--~~p~~~a~~l~g~~~~~G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v 127 (341)
T 3un6_A 50 NQQVIKIGYLPITH--SANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAV 127 (341)
T ss_dssp -CCEEEEEECSSGG--GHHHHHHHHHHHTSSSCSSEEEEEECSSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEE
T ss_pred CCceEEEEEEeccc--cHHHHHHHHhhChHHHcCCcEEEEEcCCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEE
Confidence 35689999976422 222222221 12 1247888888764 7789999999999999875211 111222222
Q ss_pred cc-ccceEEEEecCCCCCCCCCCcChhhh-cCCCeEeecCCCCcHHHHHHHHHhCCCcee-EEEEecCHHHHHHHHHhcc
Q psy3760 162 PC-YQWEYVIIVPLDHPLLLLNSISLKEI-SNYPLITYDLSFSGRIKLDREFSLQKLTPY-IVLETINSDIIKTYVELRM 238 (306)
Q Consensus 162 ~l-~~~~~~~v~~~~~~l~~~~~i~~~dl-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~g~ 238 (306)
-. ......++++++.+. -+++|| .+..+.....+......+..+++..|+.+. +.+..-+...+..++.+|.
T Consensus 128 ~~~~~~~~~ivv~~~s~I-----~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~~~~~~~~al~~G~ 202 (341)
T 3un6_A 128 ALGHHEGNVIMGQKGMHL-----NEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHR 202 (341)
T ss_dssp EESCEECEEEEESTTCCG-----GGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEECCGGGHHHHHHTTS
T ss_pred eecCCCceEEEEcCCCCC-----CCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEcChHHHHHHHHcCC
Confidence 11 235567778877642 367788 666655544333333344568888998763 3333334556777788873
Q ss_pred -ceeeeecceeccc-ccCCceeee-cCCCCccc-eEEEEEeCCc--cccHHHHHHHHHHhHHh
Q psy3760 239 -GIGIIASIAFDSN-RDKNLRSIS-ASHLFGTT-ISRVIIKQGT--YLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 239 -gi~~~p~~~~~~~-~~~~l~~~~-~~~~~~~~-~~~l~~~~~~--~~~~~~~~~~~~l~~~~ 295 (306)
-..+++....... ..+..+.+. ..+..+.. ...++.+++. ..+..+++|++.+.+..
T Consensus 203 vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~ 265 (341)
T 3un6_A 203 ITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSG 265 (341)
T ss_dssp CSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHH
Confidence 3334444433222 223223322 22211222 2445555432 24566778887776543
No 173
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=97.48 E-value=0.00018 Score=49.13 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhH
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPG 63 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G 63 (306)
..++++..+.+...+++.-|+.+++|+|++|++|+.||+ .|.--..|.|++. +++|+.+
T Consensus 22 ~r~~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~~L~~-~GlV~~~~~gr~~~y~l~~~~ 81 (118)
T 2jsc_A 22 TRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRG-CGLVVATYEGRQVRYALADSH 81 (118)
T ss_dssp HHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTT-TTSEEEEECSSSEEEEESSHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCceEEEEECCEEEEEEChHH
Confidence 345666666654348999999999999999999999997 8888777777653 2788864
No 174
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=97.46 E-value=0.00045 Score=47.17 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhHHHHHH
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPGQAILR 68 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G~~l~~ 68 (306)
..++++..+.+...+++.-|+.+++|+|++|++|+.|| +.|.--..|.|+.. +++|+.|...+.
T Consensus 19 ~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~-~~GlV~~~~~gr~~~y~l~~~~~~~l~ 83 (118)
T 3f6o_A 19 TRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLE-DSGWIRTHKQGRVRTCAIEKEPFTAVE 83 (118)
T ss_dssp HHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHH-HTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHH-HCCCeEEEecCCEEEEEECHHHHHHHH
Confidence 34566666665444899999999999999999999997 56777777776543 389998876553
No 175
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=97.45 E-value=0.00018 Score=48.25 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCHHHHHHHhC-CCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHHHHH
Q psy3760 8 FVREAVRQNFNLTEAAKALY-TSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEIIMQ 75 (306)
Q Consensus 8 ~f~~v~~~~~s~~~aA~~l~-isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~il~ 75 (306)
++..+.+.+.+++.-|+.++ +|++++|++|++||+. -|+.|.. ..+ .||+.|+.+++....+.+
T Consensus 30 IL~~L~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~---GlV~r~~~~~d~r~~~y-~LT~~G~~l~~~l~~l~~ 101 (107)
T 2fsw_A 30 IIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGK---GLIKKKQYPEVPPRVEY-SLTPLGEKVLPIIDEIAK 101 (107)
T ss_dssp HHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT---TSEEEEEECSSSCEEEE-EECHHHHTTHHHHHHHHH
T ss_pred HHHHHHhCCcCHHHHHHHcccCCHHHHHHHHHHHHHC---CCEEEeecCCCCCeeEE-EECccHHHHHHHHHHHHH
Confidence 44444433238999999995 9999999999999984 2444432 224 899999999988776644
No 176
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=97.45 E-value=0.00058 Score=48.76 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=53.6
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-------CCCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-------GKRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-------~~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ -+.+.-|+.+++++|++|+.|++||+. -|+.|. ...+ .||+.|+.++..+..
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~---Glv~r~~~~~D~R~~~~-~LT~~G~~~~~~~~~ 114 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQS---GWVKRERQQSDKRQLII-TLTDNGQQQQEAVFE 114 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHH---TSEEC---------CEE-EECSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEeeCCCCCCcceeee-eECHHHHHHHHHHHH
Confidence 3556788888887655 156788999999999999999999985 355543 2334 799999999877665
Q ss_pred HHH
Q psy3760 73 IMQ 75 (306)
Q Consensus 73 il~ 75 (306)
...
T Consensus 115 ~~~ 117 (149)
T 4hbl_A 115 AIS 117 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 177
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=97.44 E-value=0.00088 Score=54.29 Aligned_cols=193 Identities=12% Similarity=0.060 Sum_probs=110.8
Q ss_pred CCCcEEEEecccc-----------------hhhhhHHHHHHHHHhCCCcEEEEE-------------eCChhHHHHHHHc
Q psy3760 91 DTGNLTIATTHTQ-----------------ARYALPKIIKEFTIQFPKVKLSLL-------------QGNPKQITEMIRN 140 (306)
Q Consensus 91 ~~~~l~I~~~~~~-----------------~~~~l~~~l~~~~~~~p~~~i~~~-------------~~~~~~~~~~l~~ 140 (306)
..+.|+||+.... ...+...++..+.++. ++++++. ..+...++..|.+
T Consensus 11 ~~~~l~V~~~~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~l-g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 89 (312)
T 1yae_A 11 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTIL-GFTYEIRLVEDGKYGAQDDVNGQWNGMVRELID 89 (312)
T ss_dssp CSCEEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHH-CCEEEEEECSSCCCCCBCTTTCCBCSHHHHHHT
T ss_pred cCceEEEEEeccCCeeEEeccccccCCCceEEEEEHHHHHHHHHHc-CCeEEEEecCCCccceeccCCCcchHHHHHHhC
Confidence 3568999985421 1235566787777764 6777777 3567789999999
Q ss_pred CCeeEEEEccccCC--CCCce-eeccccceEEEEecCCCCCC--------------------CCCCcChhhhcCCC---e
Q psy3760 141 DQADIAIVTEILSP--SDKLI-SIPCYQWEYVIIVPLDHPLL--------------------LLNSISLKEISNYP---L 194 (306)
Q Consensus 141 ~~~Di~i~~~~~~~--~~~~~-~~~l~~~~~~~v~~~~~~l~--------------------~~~~i~~~dl~~~~---~ 194 (306)
|++|+++....... ...+. +.+++....+++++++.+.. ....-+++||.+.. +
T Consensus 90 g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~tv~~~~~~i~~~~dL~g~~~~~v 169 (312)
T 1yae_A 90 HKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESPIDSADDLAKQTKIEY 169 (312)
T ss_dssp TSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------CCSHHHHHTCSSSEE
T ss_pred CCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccCCcccccccCCCCCHHHHhhccCceE
Confidence 99999985322111 12222 45788888899998875310 12234789998873 3
Q ss_pred EeecCCCCcHHHHHHHHHhCCCce-----------eEEEEecCHHHHHHHHHhccceeeeecce-eccc--ccCCceeee
Q psy3760 195 ITYDLSFSGRIKLDREFSLQKLTP-----------YIVLETINSDIIKTYVELRMGIGIIASIA-FDSN--RDKNLRSIS 260 (306)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~g~gi~~~p~~~-~~~~--~~~~l~~~~ 260 (306)
.....+ .. ...+...+... .....+++...++.++.+|. -+++-... +..+ ...++..++
T Consensus 170 g~v~~~-~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~l~~~~ 243 (312)
T 1yae_A 170 GAVEDG-AT----MTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIG 243 (312)
T ss_dssp ECBTTS-HH----HHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTTEEEES
T ss_pred EEEeCC-hH----HHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCCEEEec
Confidence 323322 22 23333332210 12345789999999999998 66655432 2222 224555554
Q ss_pred cCCCCccceEEEEEeCCccccHHHHHHHHHHh
Q psy3760 261 ASHLFGTTISRVIIKQGTYLRSYVYSFIKLLS 292 (306)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 292 (306)
. ......++++.+++......+.+.+..++
T Consensus 244 ~--~~~~~~~~~a~~k~~~l~~~in~~l~~l~ 273 (312)
T 1yae_A 244 G--LIDSKGYGVGTPMGSPYRDKITIAILQLQ 273 (312)
T ss_dssp S--CSSCEEEEEEEETTCSSHHHHHHHHHHHH
T ss_pred c--cccccceEEEEeCCCCcHHHHHHHHHHHH
Confidence 2 23345788888887544444444444443
No 178
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=97.42 E-value=0.0039 Score=52.79 Aligned_cols=201 Identities=5% Similarity=-0.019 Sum_probs=108.6
Q ss_pred CCCcEEEEecccchh--hhhHHHHHHHHHhCCCc-EEEEEeC-ChhHHHHHHHcCC----eeEEEEccccC---------
Q psy3760 91 DTGNLTIATTHTQAR--YALPKIIKEFTIQFPKV-KLSLLQG-NPKQITEMIRNDQ----ADIAIVTEILS--------- 153 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~--~~l~~~l~~~~~~~p~~-~i~~~~~-~~~~~~~~l~~~~----~Di~i~~~~~~--------- 153 (306)
....|+||..+.... .++.. -..|.+++ ++ .+++... +...+.+.|.+|+ +|+++...+..
T Consensus 31 e~~~l~ig~~~~~~~~p~~vA~-~~G~~~~~-Gl~~Ve~~~~~~~~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~ 108 (417)
T 2g29_A 31 EVTTAKLGFIALTDAAPLIIAK-EKGFYAKY-GMPDVEVLKQASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVT 108 (417)
T ss_dssp SCSCCEEEECSSGGGHHHHHHH-HTTHHHHT-TCTTCEEEECSCHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTS
T ss_pred CCceEEEEeeccHhHHHHHHHH-HCCchHHc-CCCeeEEEecCCHHHHHHHHHCCCCcCCcCeEeecchHHHHHHhCccc
Confidence 356799999775321 11111 12244444 67 7777774 6778999999999 99998731100
Q ss_pred CCCCceeecc---ccceEEEEecCCCCCCCC-CCcC-----hhhhcCCCeEeecCCCCcHHHHHHHHHhCCCcee--EEE
Q psy3760 154 PSDKLISIPC---YQWEYVIIVPLDHPLLLL-NSIS-----LKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY--IVL 222 (306)
Q Consensus 154 ~~~~~~~~~l---~~~~~~~v~~~~~~l~~~-~~i~-----~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 222 (306)
...+.....+ ......++++++.+...- ..+. ++||.+..+.....+......+..+++..|+.|. +.+
T Consensus 109 ~~~~~~~~~~~~~~~~g~~i~v~~~~~~~~i~~s~~~l~~~~~dLkGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~ 188 (417)
T 2g29_A 109 DGKPTPMYILARLNVNGQGIQLGNNYKDLKVGTDAAPLKEAFAKVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFST 188 (417)
T ss_dssp SSCCCCEEEEEECCBSCEEEEECGGGGGGCCCSCCTTHHHHHHTSSSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred CCCCCCEEEEEEeccCCeEEEEecchhhccccCCHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEE
Confidence 1112222222 334466777776532111 1111 3788877777665554444566678999999873 443
Q ss_pred EecCHHHHHHHHHhc--cceeeeecceeccc-ccC-CceeeecCCCCccc-eEEEEEeCC--ccccHHHHHHHHHHhHH
Q psy3760 223 ETINSDIIKTYVELR--MGIGIIASIAFDSN-RDK-NLRSISASHLFGTT-ISRVIIKQG--TYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 223 ~~~~~~~~~~~v~~g--~gi~~~p~~~~~~~-~~~-~l~~~~~~~~~~~~-~~~l~~~~~--~~~~~~~~~~~~~l~~~ 294 (306)
..-....+..++.+| ++++ +++...... ..+ ..+.....+..... ...++.+++ ...+..+++|++.+.+.
T Consensus 189 v~~~~~~~~~aL~~G~vDa~~-~~eP~~~~~~~~g~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A 266 (417)
T 2g29_A 189 IVVPPAQMVANVKVNAMESFC-VGEPWPLQTVNQGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEA 266 (417)
T ss_dssp EECCGGGHHHHHHTTSCSEEE-EETTHHHHHHHHTSCEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHcCCCCEEE-eCCCHHHHHHHcCCCEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 333456778888888 4443 343332222 222 22233332211212 245555554 22356778888777554
No 179
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=97.42 E-value=0.0044 Score=48.01 Aligned_cols=188 Identities=10% Similarity=0.048 Sum_probs=104.2
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccCC-----CCCceeeccc--
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILSP-----SDKLISIPCY-- 164 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~~-----~~~~~~~~l~-- 164 (306)
..|+||+.++....++ ..+..+.+.. ++.+++... +.....+.|.+|++|+.+..+.+.- ..+.....+.
T Consensus 3 ~~i~vG~~~~~~~~~~-~~~~~~~~~~-Gl~ve~~~f~d~~~~n~AL~~G~iD~n~fq~~~~l~~~~~~~g~~l~~v~~~ 80 (241)
T 1xs5_A 3 ETVGVGVLSEPHARLL-EIAKEEVKKQ-HIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVGNV 80 (241)
T ss_dssp EEEEEEECSTTHHHHH-HHHHHHHHTT-TEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHHHTCCEEEEEEE
T ss_pred ceEEEEecCCCcHHHH-HHHHHHHHHc-CCeEEEEEcCChHHHHHHHHcCCCCEeccCCHHHHHHHHHHCCCCEEEEEee
Confidence 3699999987654333 3344444444 899999884 5678899999999999975422110 1122222222
Q ss_pred -cceEEEEecCCCCCCCCCCcChhhh-cCCCeEeecCCCCcHHHHHHHHHhCCC------------------ce-eEEEE
Q psy3760 165 -QWEYVIIVPLDHPLLLLNSISLKEI-SNYPLITYDLSFSGRIKLDREFSLQKL------------------TP-YIVLE 223 (306)
Q Consensus 165 -~~~~~~v~~~~~~l~~~~~i~~~dl-~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------~~-~~~~~ 223 (306)
..++.++ ..+--+++|| .+.....+ .+.....+...+++..|+ .| +..+.
T Consensus 81 ~~~p~g~y--------s~kiksl~dL~~G~~Iaip-~d~sn~~ral~lL~~aGli~l~~~~~~~~t~~dI~~np~~v~~~ 151 (241)
T 1xs5_A 81 HVEPLALY--------SRTYRHVSDFPAGAVIAIP-NDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQNVRNVVLQ 151 (241)
T ss_dssp EECCCEEE--------CSSCCSGGGCCTTCEEEEE-CSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEEE
T ss_pred ccccceee--------cCCCCChHHcCCCCEEEEe-CCCchHHHHHHHHHHCCCEEecCCCCCccChhhhhcCCCceEEE
Confidence 1222222 1234579999 66665554 444445566778988887 12 22232
Q ss_pred ecCHHHHHHHHHhccceeeeecceeccc-ccC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHH
Q psy3760 224 TINSDIIKTYVELRMGIGIIASIAFDSN-RDK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 224 ~~~~~~~~~~v~~g~gi~~~p~~~~~~~-~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 294 (306)
--+...+...+..-++ ++++...+... ..+ .-.... +........++.+++...++.+++|++.+++.
T Consensus 152 ~l~~~~~~~al~~VDa-a~i~~~~a~~agl~~~~~~l~~e--~~~~~~~nviv~r~~~~~~~~vk~l~~a~~s~ 222 (241)
T 1xs5_A 152 EVESALLPRVFDQVDG-AVINGNYAIMAGLSARRDGLAVE--PDASAYANVLVVKRGNEADARVQAVLRALCGG 222 (241)
T ss_dssp EECGGGHHHHGGGSSE-EEECHHHHHHTTCCTTTTCSEEC--SCGGGGCEEEEEETTCTTCHHHHHHHHHHTSH
T ss_pred EeCHHHHHHhhhccCE-EEECcHHHHHcCCCcccceEEEc--CCCCceEEEEEEECCccChHHHHHHHHHHCCH
Confidence 2233444444443344 44554333221 111 112222 21123445677777777899999999988643
No 180
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=97.41 E-value=0.00035 Score=54.22 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=51.4
Q ss_pred chhhHHHHHHHHHh-cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQ-NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL 80 (306)
Q Consensus 2 ~~~~l~~f~~v~~~-~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
+..++.++..+.+. +.|.+.-|+.+++++||+++.++.||+. |.---.+..+.+ .||+.|+.+++....+ -.|+++
T Consensus 151 ~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~-GlV~r~~r~~~~-~LT~~G~~l~~~~~~~-~~w~~a 227 (244)
T 2wte_A 151 SREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKF-GILTQKGKDRKV-ELNELGLNVIKLNKSV-IESSKS 227 (244)
T ss_dssp CHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETTTTEE-EECHHHHHHHHHTC---------
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEeCCccEE-EECHHHHHHHHHHhcc-cccHHH
Confidence 44566777666543 2388999999999999999999999986 544333334566 8999999998774443 344444
Q ss_pred HHHH
Q psy3760 81 KKIG 84 (306)
Q Consensus 81 ~~~~ 84 (306)
...+
T Consensus 228 q~~~ 231 (244)
T 2wte_A 228 SEEL 231 (244)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 181
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.40 E-value=0.0023 Score=51.51 Aligned_cols=195 Identities=5% Similarity=-0.084 Sum_probs=102.5
Q ss_pred cEEEEecccchh-hhhHHHHHHHHHhCCCcEEEEEeCChh-HHHHHHHcCCeeEEEEccccC---CCCCceee----ccc
Q psy3760 94 NLTIATTHTQAR-YALPKIIKEFTIQFPKVKLSLLQGNPK-QITEMIRNDQADIAIVTEILS---PSDKLISI----PCY 164 (306)
Q Consensus 94 ~l~I~~~~~~~~-~~l~~~l~~~~~~~p~~~i~~~~~~~~-~~~~~l~~~~~Di~i~~~~~~---~~~~~~~~----~l~ 164 (306)
+|++|..+.... .+....-..+.++. ++++++...... ...+.|.+|++|++++..... ...+.... ...
T Consensus 6 ~l~l~~~p~~~~~~~~va~~~g~~~~~-Gl~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (302)
T 3ix1_A 6 EVMLDWYPNAVHTFLYVAIENGYFAEE-GLDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVR 84 (302)
T ss_dssp EEECSSSCCGGGHHHHHHHHTTHHHHT-TEEEEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEecceeCcccHHHHHHHHcChHHHc-CCcEEEecCCCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEec
Confidence 455665543221 12222223333433 788888865554 899999999999999851100 11222222 222
Q ss_pred cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhc--ccee-
Q psy3760 165 QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELR--MGIG- 241 (306)
Q Consensus 165 ~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g--~gi~- 241 (306)
.....++++++.+ .-+++||.+.++..... ......+..++...|+.+..+-.++.......++.+| +++.
T Consensus 85 ~~~~~l~~~~~s~-----i~s~~DL~Gk~i~~~~~-~~~~~~~~~~l~~~Gl~~~~v~~~~~~~~~~~al~~G~vDa~~~ 158 (302)
T 3ix1_A 85 SPLNHVMFLAEQD-----FDSPADLVGLTVGYPGI-PVNEPILKTMVEAAGGDYEQVHLMDVGFELGASIVSGRADAVVG 158 (302)
T ss_dssp SCCEEEEEEGGGC-----CSSGGGGTTSEEEECSC-TTHHHHHHHHHHHTTCCGGGCEEEECTTCHHHHHHHSSSSEEEE
T ss_pred cCCEEEEEECCCC-----CCChHHcCCCEEEeCCC-cchHHHHHHHHHHcCCCHHHeEEEecCccHHHHHhCCCCCEEEE
Confidence 3467777777653 34789999988766544 3345567788899998764222222122345666677 3432
Q ss_pred -eeecc-eecccccCCceeeecCCC-C-ccceEEEEEeCCc--cccHHHHHHHHHHhHHh
Q psy3760 242 -IIASI-AFDSNRDKNLRSISASHL-F-GTTISRVIIKQGT--YLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 242 -~~p~~-~~~~~~~~~l~~~~~~~~-~-~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~ 295 (306)
+.+.. .........+..+...+. . ......++.+++. ..+..+++|++.+.+..
T Consensus 159 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~ 218 (302)
T 3ix1_A 159 TYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGEVLAAFWRAALKGY 218 (302)
T ss_dssp EETTTHHHHHHHTTCCEEEECGGGTTCCCCCSEEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eeecchHHHHHhcCCCceEeCHHHcCCCCCcccEEEECHHHHHHCHHHHHHHHHHHHHHH
Confidence 22221 111111223344443321 1 1223345555442 23567888888876654
No 182
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=97.39 E-value=0.0027 Score=42.87 Aligned_cols=81 Identities=16% Similarity=0.116 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhHHHHHHHH-HHHHHHHHHHHH
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPGQAILRSI-EIIMQEIEGLKK 82 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G~~l~~~a-~~il~~~~~~~~ 82 (306)
.++++..+.+.+.|++.-|+.+++|+|++|++|+.||+ .|.--..+.++.. +.+|+.|...+... ..+...++....
T Consensus 23 r~~IL~~L~~~~~~~~ela~~l~is~~tv~~~l~~L~~-~gli~~~~~gr~~~y~l~~~~~~~~~~~~~~~~~~~~~~l~ 101 (114)
T 2oqg_A 23 RWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQA-CGLVESVKVGREIRYRALGAELNKTARTLERIGAEWDRRLA 101 (114)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHH-TTSEEEEEETTEEEEEECSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeeEEecCCEEEEEechHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555333338999999999999999999999985 4544444444432 27999997654433 333333444444
Q ss_pred HHHh
Q psy3760 83 IGKE 86 (306)
Q Consensus 83 ~~~~ 86 (306)
.+..
T Consensus 102 ~l~~ 105 (114)
T 2oqg_A 102 AIKQ 105 (114)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 183
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=97.39 E-value=0.0021 Score=49.21 Aligned_cols=199 Identities=7% Similarity=0.007 Sum_probs=113.4
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEe-CChhHHHHHHHcCCeeEEEEccccC-----CCCCceeeccc--
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEILS-----PSDKLISIPCY-- 164 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~~-----~~~~~~~~~l~-- 164 (306)
.+|+||+++.....++..+-..+.++ -++.++++. .+.......|.+|++|+.+..+.+. ...++....++
T Consensus 3 ~~ikVG~~~~p~~~i~~~~~~~l~~~-~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyl~~~~k~~g~~lv~v~~~ 81 (240)
T 3tqw_A 3 AMVRVGTIAGPETQLMEVAKQVALNR-YGLHVNIITFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKT 81 (240)
T ss_dssp -CEEEEEETTHHHHHHHHHHHHHHHH-HCCCEEEEEESCTTSHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEEEEEE
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHh-cCCeEEEEEeCChHhHHHHHHcCCcCeeccCCHHHHHHHHHHCCCCEEEEeec
Confidence 47999999865555555444555533 277887776 3556788999999999998753211 11233333332
Q ss_pred -cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCC-----------ce--------eEEEEe
Q psy3760 165 -QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKL-----------TP--------YIVLET 224 (306)
Q Consensus 165 -~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~-----------~~--------~~~~~~ 224 (306)
.+++.++ + ++--+++||.+-.-|..+.+.....+....|+..|+ ++ +..+.-
T Consensus 82 ~~~p~glY-S-------~k~ksl~dL~~Ga~Iaipnd~tn~~RaL~lL~~aGLI~Lk~~~~~~~T~~DI~~Npk~l~~~e 153 (240)
T 3tqw_A 82 FVYPMGLY-S-------KKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQLIQLKTHVTINATPMDIASNPKKLKIVE 153 (240)
T ss_dssp EECCCEEE-C-------SSCSSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECCC--CCCCGGGEEECTTCCEEEE
T ss_pred cccceEEe-c-------CCCCCHHHhcCCCEEEEecCccHHHHHHHHHHHCCCEEecCCCCCcCChhhhccCCCCcEEEE
Confidence 2344443 2 223588999855556666555555666788999988 11 112222
Q ss_pred cCHHHHHHHHHhccceeeeecceeccccc--CCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHh
Q psy3760 225 INSDIIKTYVELRMGIGIIASIAFDSNRD--KNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINK 302 (306)
Q Consensus 225 ~~~~~~~~~v~~g~gi~~~p~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 302 (306)
-+...+.+.+...++..+-+.+....--. .+-..+. +....+-..++++++...++.+++|++.+++.--+.++++
T Consensus 154 ~~aaql~r~l~dvD~avin~n~a~~agl~p~~dal~~E--~~~~~y~nviavr~~~~d~~~~k~lv~a~~s~evk~~i~~ 231 (240)
T 3tqw_A 154 LDAAQLSRSLGDVDLAAINTNYAIPAGLSPSRDALLTE--GPNSPYANVVAVREDDKNDPRLKQLVSALHSPAVLSAAKK 231 (240)
T ss_dssp ECGGGGGGCTTTCSEEEECHHHHGGGTCCTTTTCSEEC--CSSSSCEEEEEEEGGGTTCHHHHHHHHHHTSHHHHHHHHH
T ss_pred cCHHHHHHhccCccEEEEcchHHHHcCCCcccCeeEEc--CCCCCeeEEEEEeccccCCHHHHHHHHHHCCHHHHHHHHH
Confidence 22233333344444444444444433211 1222222 2222345567788888899999999999876654555544
No 184
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=97.36 E-value=0.0011 Score=44.23 Aligned_cols=76 Identities=12% Similarity=-0.005 Sum_probs=55.2
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec----CCCccccCHhHHHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH----GKRIRGLTKPGQAILRSIEIIMQE 76 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~----~~~~~~lT~~G~~l~~~a~~il~~ 76 (306)
+..++.++..+.+.+ .|.+.-|+.+++|++++++.|+.||+. |.--..+. .+.+ .+|+.|+.++..+.+.+..
T Consensus 19 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~-glv~~~~~~~~r~~~~-~~t~~g~~~~~~~~~~~~~ 96 (109)
T 1sfx_A 19 KPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKR-GFVRREIVEKGWVGYI-YSAEKPEKVLKEFKSSILG 96 (109)
T ss_dssp CHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEEESSSEEEE-EEECCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEeecCCceEEE-EecCcHHHHHHHHHHHHHH
Confidence 345666777776532 378999999999999999999999875 43322222 2233 6999999999988887766
Q ss_pred HHH
Q psy3760 77 IEG 79 (306)
Q Consensus 77 ~~~ 79 (306)
..+
T Consensus 97 ~~~ 99 (109)
T 1sfx_A 97 EIE 99 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 185
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=97.33 E-value=0.0011 Score=51.73 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=56.5
Q ss_pred CchhhHHHHHHHHHhc---CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec---CCCc-cccCHhHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN---FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH---GKRI-RGLTKPGQAILRSIEII 73 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~---~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~---~~~~-~~lT~~G~~l~~~a~~i 73 (306)
++..++.++..+.+.+ -+.+.-|+.+++++|++|+.|++||+. |.--=.++ +|.+ +.||+.|+.++..+.+.
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~-GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~ 234 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ-GYLIKERSTEDERKILIHMDDAQQDHAEQLLAQ 234 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH-TSSEEEECSSSTTCEEEECCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC-CCEEeeCCCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 3567888888888764 268999999999999999999999997 43333222 2322 38999999998877666
Q ss_pred HHH
Q psy3760 74 MQE 76 (306)
Q Consensus 74 l~~ 76 (306)
.+.
T Consensus 235 ~~~ 237 (250)
T 1p4x_A 235 VNQ 237 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 186
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=97.32 E-value=0.01 Score=46.40 Aligned_cols=199 Identities=9% Similarity=-0.034 Sum_probs=115.0
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccCC-----CCCceeec--
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILSP-----SDKLISIP-- 162 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~~-----~~~~~~~~-- 162 (306)
...+|+||+++.....++..++....+. .++.++++.. +.......|.+|++|+.+..+.+.- ..++....
T Consensus 21 ~~~tIkVG~~~~p~~~il~~~~k~~l~k-~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~Lv~v~ 99 (275)
T 3gxa_A 21 AKKEIVFGTTVGDFGDMVKEQIQPELEK-KGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVF 99 (275)
T ss_dssp --CEEEEEEETTHHHHHHHHTHHHHHHT-TTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEEEeCCChHHHHHHHHHHHHHH-cCCeEEEEEeCCcHhHHHHHHcCCCCeeecCCHHHHHHHHHHcCCCEEEEe
Confidence 3468999998865555554445555544 3899999884 6678899999999999987533111 11222222
Q ss_pred -cccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCc-------------------e-eEE
Q psy3760 163 -CYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLT-------------------P-YIV 221 (306)
Q Consensus 163 -l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~ 221 (306)
...+++.++. + +--+++||.+-.-|..+.+.....+....|+..|+- | +..
T Consensus 100 ~~~~~p~glYS-~-------kiksl~dL~~Ga~IAIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~T~~DI~eNpk~lk 171 (275)
T 3gxa_A 100 QVPTAPLGLYP-G-------KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAENLKNIK 171 (275)
T ss_dssp ECCBCCCEEEE-S-------SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEECTTCCE
T ss_pred eccccceEEec-C-------CCCCHHHcCCCCEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCcCCHHHHhcCCCCCE
Confidence 2334555543 2 234789998555555555555555666788888761 1 112
Q ss_pred EEecCHHHHHHHHHhccceeeeecceeccc-c-cCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHH
Q psy3760 222 LETINSDIIKTYVELRMGIGIIASIAFDSN-R-DKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKF 299 (306)
Q Consensus 222 ~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~-~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 299 (306)
+.--+...+.+.+...++..+-+.+....- . ...|. .-. ...+-..++++++...++.+++|++.+++.--+.+
T Consensus 172 ~~eldaaql~r~l~dvD~avIn~nya~~agl~~~dal~--E~~--~~~y~Nvivvr~~d~d~~~ik~lv~a~~S~evk~~ 247 (275)
T 3gxa_A 172 IVELEAAQLPRSRADVDFAVVNGNYAISSGMKLTEALF--QEP--SFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAY 247 (275)
T ss_dssp EEEECGGGHHHHTTTSSEEEECHHHHHHTTCCGGGCSE--ECC--CCTTCCEEEEEGGGTTCHHHHHHHHHTTSHHHHHH
T ss_pred EEEeCHHHHhhhccccCEEEEchhHHHHcCCCccccee--cCC--CCCcEEEEEEeccccCCHHHHHHHHHHcCHHHHHH
Confidence 322233344454555555444444544332 2 12222 211 22334467788888899999999999876655555
Q ss_pred HHh
Q psy3760 300 INK 302 (306)
Q Consensus 300 ~~~ 302 (306)
+++
T Consensus 248 i~~ 250 (275)
T 3gxa_A 248 AHK 250 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 187
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=97.31 E-value=0.014 Score=46.80 Aligned_cols=193 Identities=10% Similarity=0.019 Sum_probs=115.0
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccCC---------CCCceee-
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSP---------SDKLISI- 161 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~~---------~~~~~~~- 161 (306)
...|+||....-....+..++..+.+.+ ++++++...+...+.+.|.+|++|++.....+.. ...+...
T Consensus 6 ~~~I~ig~~~~~~~~~~~~i~~~~Le~~-G~~Ve~~~~~~~~~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~~l~ 84 (298)
T 2rin_A 6 CGTVRFSDVGWTDITATTATATTILEAL-GYETDVKVLSVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVR 84 (298)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHHHHHHH-TCEEEEECCCHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEEEEE
T ss_pred CCCEEEecCCCcHHHHHHHHHHHHHHHc-CCceEEEECCcHHHHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEEEec
Confidence 4579999988766667777777776664 8899998888788899999999999975311110 1233322
Q ss_pred c-cccceEEEEecCCCCCCCCCCcChhhhc------CCCeEeecCCCCcHHHHHHHHH--hCCCc-eeEEEEecCHHH--
Q psy3760 162 P-CYQWEYVIIVPLDHPLLLLNSISLKEIS------NYPLITYDLSFSGRIKLDREFS--LQKLT-PYIVLETINSDI-- 229 (306)
Q Consensus 162 ~-l~~~~~~~v~~~~~~l~~~~~i~~~dl~------~~~~i~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~-- 229 (306)
+ .......++++++... +.--+++||. +-.++..+++......+...++ ..|+. .+.+ ..+...
T Consensus 85 ~~~~~~~~~l~V~~~~ae--~~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~~v--~~~~~~~~ 160 (298)
T 2rin_A 85 ENLAGAKYTLATNAKGAE--LGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVV--ESSEQGML 160 (298)
T ss_dssp EEEEEEEEEEEEEHHHHH--HTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEE--CCCHHHHH
T ss_pred cCCCCCeEEEEEchhHHh--cCCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCCceec--cCCHHHHH
Confidence 1 1234577888775410 0224677776 3457777776666666777786 67873 3322 234333
Q ss_pred --HHHHHHhccc---eeeeecceecccccCCceeeecCCCC-c----cceEEEEEeCCc-cccHHHHHHHHHHh
Q psy3760 230 --IKTYVELRMG---IGIIASIAFDSNRDKNLRSISASHLF-G----TTISRVIIKQGT-YLRSYVYSFIKLLS 292 (306)
Q Consensus 230 --~~~~v~~g~g---i~~~p~~~~~~~~~~~l~~~~~~~~~-~----~~~~~l~~~~~~-~~~~~~~~~~~~l~ 292 (306)
+.+.+.+|.- .+.-|.+.... .+++.+.-+... . ....+.+.+++- ...|.+.+|++.+.
T Consensus 161 a~~~~A~~~g~~~v~~~w~p~~~~~~---~~l~~L~d~k~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~L~~~~ 231 (298)
T 2rin_A 161 AQVARAEKSGDPIVFLGWEPHPMNAN---FKLTYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVDKLLQNLS 231 (298)
T ss_dssp HHHHHHHHTTCCCEEEEEESSTHHHH---SCEEECBSCTTTTCHHHHEEEEEEEEETTHHHHSHHHHHHHHHCC
T ss_pred HHHHHHHHCCCCEEEEEeccCchhhc---CCeeECCCCccccCCCCCcceEeeeechHHHHHChHHHHHHHHcC
Confidence 3455667743 33345544333 245555433211 1 245555666653 23677888887554
No 188
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.28 E-value=0.00052 Score=44.91 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHH
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQA 65 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~ 65 (306)
.++++..+ +...+++.-|+.+++|++|++++|+.||+. |.--..+ +.+ ++|+.|+.
T Consensus 33 r~~Il~~L-~~~~~~~eLa~~l~is~~tv~~~L~~L~~~-Glv~~~~--g~y-~l~~~g~~ 88 (96)
T 1y0u_A 33 RRKILRML-DKGRSEEEIMQTLSLSKKQLDYHLKVLEAG-FCIERVG--ERW-VVTDAGKI 88 (96)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEET--TEE-EECTTTCC
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEC--CEE-EECCCchH
Confidence 34555555 433489999999999999999999999876 6544444 355 89998754
No 189
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=97.24 E-value=0.00094 Score=50.60 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=56.5
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-------CCccccCHhHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-------KRIRGLTKPGQAILRSIEI 72 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-------~~~~~lT~~G~~l~~~a~~ 72 (306)
++..++.++..+.+.+ .+.+.-|+.+++++|++|+.|++||+. -|+.|.. ..+ .||+.|+.++..+..
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~---GlV~r~~~~~DrR~~~l-~LT~~G~~~~~~~~~ 121 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEER---GYLRFSKRLNDKRNTYV-QLTEEGTEVFWSLLE 121 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHH---TSEEEECC------CEE-EECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEecCCCCCceEEE-EECHHHHHHHHHHHH
Confidence 3456777888887643 278899999999999999999999986 3455543 245 899999999999887
Q ss_pred HHHHH
Q psy3760 73 IMQEI 77 (306)
Q Consensus 73 il~~~ 77 (306)
....+
T Consensus 122 ~~~~~ 126 (207)
T 2fxa_A 122 EFDPT 126 (207)
T ss_dssp HCCGG
T ss_pred HHHHH
Confidence 65443
No 190
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=97.20 E-value=0.013 Score=45.08 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=115.6
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccC-----CCCCceeeccc
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILS-----PSDKLISIPCY 164 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~-----~~~~~~~~~l~ 164 (306)
...+|+||+++.....++..+-..+.+++ ++.++++.. +.......|.+|++|+.+..+.+. ...++....++
T Consensus 5 ~~~~ikVG~~~~p~~~il~~v~~~l~k~~-Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQH~pyL~~~nk~~g~~lv~v~ 83 (245)
T 3up9_A 5 DVVTLTVGATPSPHAKILTYINDNLAADA-GIKLDIVEYTDYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGE 83 (245)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTHHHH-TEEEEEEECSSSHHHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEECC
T ss_pred CCceEEEEEeCCChHHHHHHHHHHHHHHc-CCeEEEEEecCcccHHHHHHcCCCceeccCCHHHHHHHHHHCCCCEEEEe
Confidence 34589999988755555544444444433 799999885 566788899999999999853311 11233333333
Q ss_pred ---cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCc---e--------------eEEEEe
Q psy3760 165 ---QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLT---P--------------YIVLET 224 (306)
Q Consensus 165 ---~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~--------------~~~~~~ 224 (306)
.+++.++ +++ --+++||.+---|..+.+.....+....|+..|+- + +..+.-
T Consensus 84 ~~~~~p~giY-S~k-------~ksl~dL~~Ga~IaIPnD~tN~~RaL~lL~~aGLIkLk~~~~~~~~~T~~DIk~lk~~e 155 (245)
T 3up9_A 84 GIHLEPLGVF-SNK-------HKSLDELPDGGTIGIISDTANQSRALELLATQGLVSIPEGDGDVNINTVTKLKNFDFRE 155 (245)
T ss_dssp CCEECCCEEE-CSS-------CSCGGGCCTTEEEEEECSHHHHHHHHHHHHHTTSEECCCCC--CSTTTSEESSSEEEEE
T ss_pred eecccceEEE-eCC-------CCCHHHcCcCCEEEEecCcchHHHHHHHHHHCCCEEecCCCCCcCcCChhhccccEEEE
Confidence 2445554 222 34788998555555555545445556688888762 1 222332
Q ss_pred cCHHHHHHHHHhccceeeeecceecccccC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHh
Q psy3760 225 INSDIIKTYVELRMGIGIIASIAFDSNRDK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINK 302 (306)
Q Consensus 225 ~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 302 (306)
-+...+.+.+...++..+-+.+....--.+ +-..+.-.. ...+-..++++++...++.+++|++.+++.--+.++++
T Consensus 156 ~daaqlpr~l~dvd~avin~nya~~agl~p~~dal~~E~~~-~~py~nviavr~~~~d~~~~k~lv~a~~s~evk~~i~~ 234 (245)
T 3up9_A 156 VEGPQLVRSLDDFDYAVINGNFAQEGGKTISGDALVVESPV-DNPAVNVLVWKGDSKKVDAIAKLEKLLHSDEVKQYIEK 234 (245)
T ss_dssp ECGGGHHHHTTTSSEEEECHHHHHHTTCCHHHHCSEECCCT-TCCCEEEEEEETTCTTHHHHHHHHHHHTSHHHHHHHHH
T ss_pred eCHHHHhhhcccCCEEEEchhHHHHcCcCcccCeeEECCCC-CCCcEEEEEEeccccCCHHHHHHHHHHCCHHHHHHHHH
Confidence 333445555555454444334444331111 111222111 22334567778888899999999999876654555544
No 191
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=97.15 E-value=0.001 Score=43.64 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhHH
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPGQ 64 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G~ 64 (306)
..++++..+.+.+.+++.-|+.+++|+|++|++|+.||+ .|.---.|.|+.. +++|+.+.
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~-~Glv~~~~~g~~~~y~l~~~~~ 84 (98)
T 3jth_A 24 RRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRR-DGLVTTRKEAQTVYYTLKSEEV 84 (98)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH-TTSEEEECCTTCCEEEECCHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEEEeCCEEEEEECHHHH
Confidence 345566666653337999999999999999999999986 6766556665543 27888753
No 192
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=97.10 E-value=0.0017 Score=43.45 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhH
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPG 63 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G 63 (306)
.++++..+.+.+.|++.-|+.+++|+|++|++|+.||+ .|.--..|.|+.. +++|+.|
T Consensus 27 r~~IL~~L~~~~~s~~eLa~~lgis~stvs~~L~~L~~-~GlV~~~~~gr~~~y~l~~~~ 85 (108)
T 2kko_A 27 RLQILDLLAQGERAVEAIATATGMNLTTASANLQALKS-GGLVEARREGTRQYYRIAGED 85 (108)
T ss_dssp THHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHH-HTSEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEEEeCCEEEEEEChHH
Confidence 35556666553347899999999999999999999986 5766666666543 2789877
No 193
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=97.09 E-value=0.0028 Score=50.34 Aligned_cols=204 Identities=10% Similarity=0.082 Sum_probs=121.7
Q ss_pred CCCCcEEEEecccchhhhhHHHHHHHHHhCCC--cEEEEEe--CChhHHHHHHHcCCeeEEE-Ec-----cccCC-----
Q psy3760 90 YDTGNLTIATTHTQARYALPKIIKEFTIQFPK--VKLSLLQ--GNPKQITEMIRNDQADIAI-VT-----EILSP----- 154 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~--~~i~~~~--~~~~~~~~~l~~~~~Di~i-~~-----~~~~~----- 154 (306)
...+.|+||....-...++..++..+.+...+ +.+++.. +++..+.+.|.+|++|+.. -+ .+..+
T Consensus 6 ~~~~~I~ig~~~~te~~il~~i~~~~Le~~~G~~~~V~~~~~lg~~~~~~~al~~G~iDv~~~eytGt~w~~~l~~~~~~ 85 (282)
T 3o66_A 6 STKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIK 85 (282)
T ss_dssp -CCCCCEEEEESSHHHHHHHHHHHHHHHHHTTTSCCCEEEEEESSHHHHHHHHHHTSCSEEEEEEHHHHHHTTTCCCCCC
T ss_pred CCCCCEEEEcCCCcHHHHHHHHHHHHHHhccCCceeEEEEecCCCcHHHHHHHHcCCCCEeehhccchhhHhhcCCCCCC
Confidence 45678999999998899999999998887656 7777775 5666789999999999998 21 11111
Q ss_pred CC---------------Cceee--ccccceEEEEecCCCCCCCCCCcChhhhcCCC---eEeecCCCCcHH--HHHHHHH
Q psy3760 155 SD---------------KLISI--PCYQWEYVIIVPLDHPLLLLNSISLKEISNYP---LITYDLSFSGRI--KLDREFS 212 (306)
Q Consensus 155 ~~---------------~~~~~--~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~---~i~~~~~~~~~~--~~~~~~~ 212 (306)
.+ ++... -.+...+.+++++..... ..--+++||..++ .+..+.++..+. -+....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~n~~~laV~~~~a~~-~~l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~l~~ 164 (282)
T 3o66_A 86 DPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKK-YHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKK 164 (282)
T ss_dssp SHHHHHHHHHHHHHHHHSEEECCCCSCBCCEEEEECHHHHHH-HTCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHHHH
T ss_pred CHHHHHHHHHHHhhhccCeEEeccCCcCCeEEEEEeHHHHhH-cCCCCHHHHHhcccceEEecCcccccCchhHHHHHHH
Confidence 00 11111 012346777777753111 1234788888764 333443222111 2344455
Q ss_pred hCCCceeEEEEecCHHHHHHHHHhccce---eeeecceecccccCCceeeecCC-CCccceEEEEEeCCc-cccHHHHHH
Q psy3760 213 LQKLTPYIVLETINSDIIKTYVELRMGI---GIIASIAFDSNRDKNLRSISASH-LFGTTISRVIIKQGT-YLRSYVYSF 287 (306)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~g~gi---~~~p~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~~ 287 (306)
..|+..... ...+...+.+++++|..+ +..|+++.. ..+|+.+.-+. ..+......+.+++- ...|.+.++
T Consensus 165 ~Ygl~~~~~-~~~d~g~~~~A~~~~~~~v~~~wsp~~~~~---~~dL~~LeD~k~~fp~~~~~~vvr~~~~~~~P~~~~~ 240 (282)
T 3o66_A 165 EYGFDFGTV-RPMQIGLVYDALNTEKLDVALGYSTDGRIA---AYDLKVLKDDKQFFPPYAASAVATNELLRQHPELKTT 240 (282)
T ss_dssp HHCCCCSEE-EEECGGGHHHHHHTTSCSEEEEETTCHHHH---HTTCEECBCTTCCSCCCBEEEEEEHHHHHHCTHHHHH
T ss_pred HcCCCCccc-cccCHHHHHHHHHcCCCeEEEEeCCCchhh---hcCceEcCCCcccccccceeEEEcHHHHhHCHHHHHH
Confidence 567765433 333445788899998544 345555544 34688876554 233445666666653 235778888
Q ss_pred HHHHhHHhhHH
Q psy3760 288 IKLLSPKLNRK 298 (306)
Q Consensus 288 ~~~l~~~~~~~ 298 (306)
++-+...+...
T Consensus 241 L~~l~~~lt~~ 251 (282)
T 3o66_A 241 INKLTGKISTS 251 (282)
T ss_dssp HHTTTTCCCHH
T ss_pred HHHHhccCCHH
Confidence 87775444333
No 194
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=97.07 E-value=0.00049 Score=55.26 Aligned_cols=188 Identities=11% Similarity=-0.011 Sum_probs=105.0
Q ss_pred CCcEEEEecccc-----------hhhhhHHHHHHHHHhCCCcEEEEEeC-----------------ChhHHHHHHHcCCe
Q psy3760 92 TGNLTIATTHTQ-----------ARYALPKIIKEFTIQFPKVKLSLLQG-----------------NPKQITEMIRNDQA 143 (306)
Q Consensus 92 ~~~l~I~~~~~~-----------~~~~l~~~l~~~~~~~p~~~i~~~~~-----------------~~~~~~~~l~~~~~ 143 (306)
.+.+++|+.... ...+...++..+.+.. +++++++.. +...++..|.+|++
T Consensus 40 ~~~l~vg~~~~~~P~~~~~~~g~~~G~~vDll~~ia~~l-g~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~ 118 (292)
T 1pb7_A 40 KKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTM-NFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQA 118 (292)
T ss_dssp CCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHH-TCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSC
T ss_pred cceeecccCCCCCCccccccccCcceeHHHHHHHHHHHc-CceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCc
Confidence 478999887643 3456777777777654 667777663 56789999999999
Q ss_pred eEEEEccccC--CCCCce-eeccccceEEEEecCCCCCCCCCCcChhhhc--CC---CeEeecCCCCcHHHHHHHHHhC-
Q psy3760 144 DIAIVTEILS--PSDKLI-SIPCYQWEYVIIVPLDHPLLLLNSISLKEIS--NY---PLITYDLSFSGRIKLDREFSLQ- 214 (306)
Q Consensus 144 Di~i~~~~~~--~~~~~~-~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~--~~---~~i~~~~~~~~~~~~~~~~~~~- 214 (306)
|+++...... ....+. +.|+......++++++.++. +++|+. +. ..+....+.... .++...
T Consensus 119 D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~i~-----~~~dl~~~g~~~~~~~~~~~~~~~~----~~~~~~~ 189 (292)
T 1pb7_A 119 DMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRIT-----GINDPRLRNPSDKFIYATVKQSSVD----IYFRRQV 189 (292)
T ss_dssp SEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCCCC-----STTCHHHHSCBTTBCEECBTTSHHH----HHHHTCG
T ss_pred CEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcCCC-----CCcCccccCcccceEEEEEcCchHH----HHhhhcc
Confidence 9998532211 112333 45777888899999887532 455664 32 222222222211 122111
Q ss_pred CC---ce-eEEEEecCHHHHHHHHHhccceeeeec-ceeccc--ccCCceeeecCCCCccceEEEEEeCCccccHHHHHH
Q psy3760 215 KL---TP-YIVLETINSDIIKTYVELRMGIGIIAS-IAFDSN--RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSF 287 (306)
Q Consensus 215 ~~---~~-~~~~~~~~~~~~~~~v~~g~gi~~~p~-~~~~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 287 (306)
.. .+ .....+++...++.++.+|..-+++-+ ..+... ...++..+. .......++++.+++......+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~l~~~~--~~~~~~~~~ia~~k~~~l~~~in~a 267 (292)
T 1pb7_A 190 ELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTG--ELFFRSGFGIGMRKDSPWKQNVSLS 267 (292)
T ss_dssp GGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECS--SCSEEEEECCEEETTCSSHHHHHHH
T ss_pred cHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCCEEEcC--ccccCCceEEEEeCCCHHHHHHHHH
Confidence 00 00 012246789999999999975555443 333222 234554443 2233457778888875444444444
Q ss_pred HHHH
Q psy3760 288 IKLL 291 (306)
Q Consensus 288 ~~~l 291 (306)
+..+
T Consensus 268 l~~l 271 (292)
T 1pb7_A 268 ILKS 271 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 195
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=97.04 E-value=0.00066 Score=50.31 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=38.5
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSI 70 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a 70 (306)
+-..-|+.|++|+|++|..+++|+++ | |..+.++|+ +||+.|+.+....
T Consensus 32 ~~~~LA~~LgvS~~SV~~~lkkL~e~-G--LV~~~~~Gv-~LTe~G~~~A~~i 80 (200)
T 2p8t_A 32 GRKQISERLELGEGSVRTLLRKLSHL-D--IIRSKQRGH-FLTLKGKEIRDKL 80 (200)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEC--CE-EECHHHHHHHHHH
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHC-C--CEEEeCCCe-EECHHHHHHHHHH
Confidence 56778999999999999999999974 3 455555787 8999999975543
No 196
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.00 E-value=0.0045 Score=40.86 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhH
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPG 63 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G 63 (306)
..++++..+.+...+++.-|+.+++|+|++|++|+.||+ .|.---.|.++.. +++|+.+
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~-~Glv~~~~~g~~~~y~l~~~~ 83 (102)
T 3pqk_A 24 VRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRE-SGIVETRRNIKQIFYRLTEAK 83 (102)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHHHHHH-TTSEEEECSSSCCEEEECSST
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEEEeCCEEEEEECcHH
Confidence 345566666554348999999999999999999999974 5665555555543 3788863
No 197
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=96.99 E-value=0.0051 Score=47.55 Aligned_cols=200 Identities=13% Similarity=0.081 Sum_probs=113.6
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccC-----CCCCceeecc---
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILS-----PSDKLISIPC--- 163 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~-----~~~~~~~~~l--- 163 (306)
.+|+||+++.....++.. +..+.+.. ++.++++.. +.......|.+|++|+.+..+.+. ...++....+
T Consensus 11 ~~ikVG~~~~p~~~il~~-v~~~~~k~-Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~~k~~g~~lv~v~~~ 88 (252)
T 4ib2_A 11 KTIKVAASATPHAEILEQ-AKSILKKE-GYQLEVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGTHLVDAGDI 88 (252)
T ss_dssp HEEEEEECTTTHHHHHHH-HHHHHHHT-TCEEEEEECSSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHHCCCEEEEEEE
T ss_pred ceEEEEEcCCChHHHHHH-HHHHHHhc-CCeEEEEEecChhhHHHHHHcCCcCeeecCCHHHHHHHHHHCCCCEEEEeec
Confidence 469999998755555544 44444443 899999885 556788999999999998753311 1122333333
Q ss_pred ccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCc------------------e-eEEEEe
Q psy3760 164 YQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLT------------------P-YIVLET 224 (306)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~ 224 (306)
..+++.++. + +--+++||.+-.-|..+.+.....+....|+..|+- | +..+.-
T Consensus 89 ~~~p~glyS-~-------kiksl~dLk~Ga~IAipnd~sN~~RaL~lL~~aGLIkLk~~~~~~~t~~DI~~Npk~lk~~e 160 (252)
T 4ib2_A 89 HYEPFGIYP-G-------TKKSLDEISEGDKIAVPNDTTNEARALLLLQDNGIITLKDGAGLNATVNDIEENPYNVEIVE 160 (252)
T ss_dssp EECCCEEEE-S-------SCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCGGGCCGGGEEECTTCCEEEE
T ss_pred cccceEeec-C-------CcCCHHHcCCCCEEEeeCCCCHHHHHHHHHHHCCCEEecCCCCCCCCHHHHhcCCCCcEEEE
Confidence 233444432 2 234889998555555555545555666788888851 1 112322
Q ss_pred cCHHHHHHHHHhccceeeeecceecccccC--CceeeecCCCC--ccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHH
Q psy3760 225 INSDIIKTYVELRMGIGIIASIAFDSNRDK--NLRSISASHLF--GTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300 (306)
Q Consensus 225 ~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~--~l~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (306)
-+...+.+.+...++..+-+.+....--.+ +-..+.-.... ..+--.++++++...++.+++|++.+++.--+.++
T Consensus 161 l~aaql~r~l~dvD~avin~n~a~~agl~p~~dal~~E~~~~~~~~~y~Niiavr~~~~d~~~~k~lv~a~~s~evk~~i 240 (252)
T 4ib2_A 161 LEAAQVARVTGETAYVVLNGNYALEAGYSVAKDALAYEKSDSEAAKTYVNIIAVKEGNEKEEKIQALVKALKSDEIKEYI 240 (252)
T ss_dssp ECGGGGGGGTTTSSEEEECHHHHHHTTCCHHHHCSEECCTTBHHHHHSEEEEEEETTCTTCHHHHHHHHHHTSHHHHHHH
T ss_pred cCHHHHHhhhccCCEEEEchhHHHHcCCCCccceeEecCCCcccCCCeeEEEEEecCccCCHHHHHHHHHHCCHHHHHHH
Confidence 233344444445454444444544331111 12222211110 23445677788888999999999998776555555
Q ss_pred Hh
Q psy3760 301 NK 302 (306)
Q Consensus 301 ~~ 302 (306)
++
T Consensus 241 ~~ 242 (252)
T 4ib2_A 241 EK 242 (252)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 198
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.94 E-value=0.0016 Score=46.52 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc-cccCHhHHHHHHHH
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI-RGLTKPGQAILRSI 70 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~~lT~~G~~l~~~a 70 (306)
.++++..+.+...+++.-|+.+++|+|++|++|+.||+ .|.--..|.|+.. +++|+.|...+...
T Consensus 60 R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~-aGlV~~~~~Gr~~~y~lt~~~~~~l~~~ 125 (151)
T 3f6v_A 60 RRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTE-AGLVTPRKDGRFRYYRLDPQGLAQLRAL 125 (151)
T ss_dssp HHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHH-TTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCCEEEEecCCEEEEEEChHHHHHHHHH
Confidence 45666666554348999999999999999999999975 4666666666543 38999997766543
No 199
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=96.91 E-value=0.0017 Score=40.01 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
+-++.++|..+.+.. |....|+.+|+|++|++++++++.+.||..
T Consensus 13 ~~~e~~il~~~~~g~-s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 13 TKREREVFELLVQDK-TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CHHHHHHHHHHTTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHcCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 446677787776666 999999999999999999999999999863
No 200
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=96.90 E-value=0.021 Score=46.04 Aligned_cols=199 Identities=5% Similarity=-0.045 Sum_probs=116.4
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEe-CChhHHHHHHHcCCeeEEEEccccCC---------CCCcee
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEILSP---------SDKLIS 160 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~~~---------~~~~~~ 160 (306)
....|+||....-...++..++..+.+.. ++.+++.. .+...+.+.|.+|++|+......+.. ...+..
T Consensus 6 ~~~~I~ig~~~~~e~~~~~~i~~~~Le~~-Gy~Ve~~~~~~~~~~~~Al~~G~iDi~~e~w~~~~~~~~~~~~~~~~l~~ 84 (309)
T 1r9l_A 6 KGITVNPVQSTITEETFQTLLVSRALEKL-GYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYR 84 (309)
T ss_dssp TTCEECEEECSCGGGHHHHHHHHHHHHHT-TCEECCCEECCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEE
T ss_pred CCceEEEeecCccHHHHHHHHHHHHHHHc-CCCeEEeecCchHHHHHHHhcCCceEEeccccCccHHHHHHhhcCCcEEE
Confidence 45679999988766667777777777765 78888653 57778899999999999974321110 012222
Q ss_pred ecc--ccceEEEEecCCCCCCCCCCcChhhhcC--------------CCeEeecCCCCcHHHHHHHHHhCCCceeEEEEe
Q psy3760 161 IPC--YQWEYVIIVPLDHPLLLLNSISLKEISN--------------YPLITYDLSFSGRIKLDREFSLQKLTPYIVLET 224 (306)
Q Consensus 161 ~~l--~~~~~~~v~~~~~~l~~~~~i~~~dl~~--------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (306)
..- ......++++++.... ..--+++||.+ -.++..+++...+..+...++..|+...+....
T Consensus 85 l~~~~~~~~~~l~V~~~~a~~-~~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~~~~~~~ 163 (309)
T 1r9l_A 85 EGVFVNGAAQGYLIDKKTADQ-YKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQ 163 (309)
T ss_dssp CSCSEEEEEEEEEEEHHHHHH-HTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred ecccCCCceEEEEEchhhhhh-cCCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCCceEEcC
Confidence 111 2345778887752100 01236777762 146777777666667788889999875344333
Q ss_pred cCH----HHHHHHHHhcccee---eeecceeccc-ccCCceeeecC---------------C---C-CccceEEEEEeCC
Q psy3760 225 INS----DIIKTYVELRMGIG---IIASIAFDSN-RDKNLRSISAS---------------H---L-FGTTISRVIIKQG 277 (306)
Q Consensus 225 ~~~----~~~~~~v~~g~gi~---~~p~~~~~~~-~~~~l~~~~~~---------------~---~-~~~~~~~l~~~~~ 277 (306)
.+. ..+..++.+|..+. .-|.+....+ ...+++.+..+ + . .+...+..+.+++
T Consensus 164 ~s~~~~~~~~~~A~~~g~~~v~~~w~P~~~~~~~~~g~dl~~Le~~~~~~~~~~~~~~~L~d~k~~~~p~~~~~~v~~~~ 243 (309)
T 1r9l_A 164 GNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKA 243 (309)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEEEESSSHHHHSCBTTTEEECBCSSCCCTTCTTCCCBCTTSCBCSSCSEEEEEEEEHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeecCchHhhhccccCCceEeccCcccccccccccccCCCccccCCCcceEEEEechh
Confidence 443 24556777885433 3455544432 01155553322 1 1 2344555555554
Q ss_pred c-cccHHHHHHHHHH
Q psy3760 278 T-YLRSYVYSFIKLL 291 (306)
Q Consensus 278 ~-~~~~~~~~~~~~l 291 (306)
- ...|.+..|++-+
T Consensus 244 ~~~~~P~~~~~L~~~ 258 (309)
T 1r9l_A 244 WAEKNPAAAKLFAIM 258 (309)
T ss_dssp HHHHCHHHHHHHHHC
T ss_pred HHHHChHHHHHHHhC
Confidence 2 2367778887655
No 201
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=96.85 E-value=0.0067 Score=41.49 Aligned_cols=75 Identities=7% Similarity=0.050 Sum_probs=54.9
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhC----CCchHHHHHHHHHHHHcCceeEEecCCCc--cccCHhHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALY----TSQPGVSKAIIELEEELSIDIFIRHGKRI--RGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~----isq~~~s~~i~~LE~~lg~~Lf~R~~~~~--~~lT~~G~~l~~~a~~il 74 (306)
+..++.++..+.+.+ .|.+.-|+.++ +|+||+++.|++||+. |.---.++++.. +.+|+.|+.++..+.++.
T Consensus 9 t~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~-Glv~r~~~~rr~~~~~lT~~g~~~~~~~~~~~ 87 (123)
T 1okr_A 9 SSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK-GFIDRKKDNKIFQYYSLVEESDIKYKTSKNFI 87 (123)
T ss_dssp CHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-TSEEEEEETTEEEEEESSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC-CCeEEEecCCeEEEEEecCHHHHHHHHHHHHH
Confidence 345666776666543 26788899999 8999999999999986 433333333322 269999999999998888
Q ss_pred HHH
Q psy3760 75 QEI 77 (306)
Q Consensus 75 ~~~ 77 (306)
+.+
T Consensus 88 ~~~ 90 (123)
T 1okr_A 88 NKV 90 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 202
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=96.85 E-value=0.028 Score=43.10 Aligned_cols=196 Identities=9% Similarity=-0.037 Sum_probs=113.7
Q ss_pred cEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccCC-----CCCceeecc---c
Q psy3760 94 NLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILSP-----SDKLISIPC---Y 164 (306)
Q Consensus 94 ~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~~-----~~~~~~~~l---~ 164 (306)
+|+||+++.....++........+. .++.++++.. +.......|.+|++|+.+..+.+.- ..++....+ .
T Consensus 2 ~ikVG~~~~p~~~il~~~~k~~l~k-~Gi~leiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~ 80 (245)
T 3ir1_A 2 EIVFGTTVGDFGDMVKEQIQPELEK-KGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVP 80 (245)
T ss_dssp EEEEEEETTHHHHHHHHTHHHHHHT-TTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECC
T ss_pred eEEEEEcCCChHHHHHHHHHHHHHH-cCceEEEEEeCCcHhHHHHHHCCCcCeeccCCHHHHHHHHHHcCCCEEEEeeec
Confidence 6899998875555555445555444 3899988874 5567889999999999987533111 112222222 3
Q ss_pred cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCc-------------------e-eEEEEe
Q psy3760 165 QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLT-------------------P-YIVLET 224 (306)
Q Consensus 165 ~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~ 224 (306)
-+++.++. +. --+++||.+---|..+.+.....+....|+..|+- | +..+.-
T Consensus 81 ~~p~glYS-~k-------~ksl~dl~~Ga~IaIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~T~~DI~~Npk~lk~~e 152 (245)
T 3ir1_A 81 TAPLGLYP-GK-------LKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAENLKNIKIVE 152 (245)
T ss_dssp BCCCEEEE-SS-------CCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEECTTCCEEEE
T ss_pred ccceEEec-CC-------CCCHHHcCCCCEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCcCCHHHHhcCCCCCEEEE
Confidence 34555542 22 34788998655666666555555666788888761 1 112222
Q ss_pred cCHHHHHHHHHhccceeeeecceeccc-c-cCCceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHh
Q psy3760 225 INSDIIKTYVELRMGIGIIASIAFDSN-R-DKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINK 302 (306)
Q Consensus 225 ~~~~~~~~~v~~g~gi~~~p~~~~~~~-~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 302 (306)
-+...+.+.+...++..+-+.+....- . ...|. . +....+-..++++++...++.+++|++.+++.--+.++++
T Consensus 153 ~daaql~r~l~dvD~avin~nya~~agl~~~dal~--E--~~~~~y~Nvivvr~~~~d~~~ik~lv~a~~S~evk~~i~~ 228 (245)
T 3ir1_A 153 LEAAQLPRSRADVDFAVVNGNYAISSGMKLTEALF--Q--EPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYAHK 228 (245)
T ss_dssp ECGGGSGGGGGTSSEEEECHHHHHHTTCCGGGCSE--E--CCCCTTCCEEEEEGGGTTCHHHHHHHHHTTSHHHHHHHHH
T ss_pred eCHHHHhhhccccCEEEEchhHHHHcCCCccccee--c--CCCCCcEEEEEEeccccCCHHHHHHHHHHCCHHHHHHHHH
Confidence 223333444445454444444444332 2 11222 2 2122334457778888889999999999876654555543
No 203
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=96.83 E-value=0.0057 Score=47.63 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=57.3
Q ss_pred CchhhHHHHHHHHHh---cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec---CCCc-cccCHhHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQ---NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH---GKRI-RGLTKPGQAILRSIEII 73 (306)
Q Consensus 1 m~~~~l~~f~~v~~~---~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~---~~~~-~~lT~~G~~l~~~a~~i 73 (306)
++..|+.++..+.+. |-+.+.-|+.++++++++|+.|++||+. |.--=.|+ .|.+ +.||+.|+.++..+.+.
T Consensus 32 lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~-G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~ 110 (250)
T 1p4x_A 32 MTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKH-SYISKVRSKIDERNTYISISEEQREKIAERVTL 110 (250)
T ss_dssp SCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHT-TSCEEEECSSSTTSEEEECCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHC-CCEEecCCCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 356788888888873 2279999999999999999999999997 53332322 1222 37999999987777666
Q ss_pred HHHHH
Q psy3760 74 MQEIE 78 (306)
Q Consensus 74 l~~~~ 78 (306)
.+...
T Consensus 111 ~~~~~ 115 (250)
T 1p4x_A 111 FDQII 115 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 204
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=96.81 E-value=0.0015 Score=38.55 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=26.7
Q ss_pred HHHHHHhcCCHHHHHHHhCCCchHHHHHHHHH
Q psy3760 9 VREAVRQNFNLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 9 f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~L 40 (306)
-.++.++| +.++||+.||||++|+.+.|+++
T Consensus 27 ~~aL~~~g-n~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 27 KLFYAEYP-STRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp HHHHHHSC-SHHHHHHHTTSCTHHHHHHHHTT
T ss_pred HHHHHHhC-CHHHHHHHhCCCHHHHHHHHHHh
Confidence 34566678 99999999999999999999874
No 205
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=96.79 E-value=0.09 Score=40.52 Aligned_cols=201 Identities=11% Similarity=0.118 Sum_probs=118.5
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccC------CCCCceeecc
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILS------PSDKLISIPC 163 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~------~~~~~~~~~l 163 (306)
...+|+||+++.....++-. +....+. .++.++++.. +....-..|.+|++|+-+..+.+. ...++....+
T Consensus 4 ~~k~i~vgat~~P~aeil~~-vk~~l~k-~Gi~leiv~F~Dy~~pN~AL~~G~iDaN~fQH~pyL~~~~k~~~g~~lv~v 81 (249)
T 4got_A 4 GKKEIVVAATKTPHAEILKE-AEPLLKE-KGYTLKVKVLSDYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKLVNA 81 (249)
T ss_dssp CTTEEEEEECTTTHHHHHHH-HHHHHHT-TTCEEEEECCSSTHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTCCEEEE
T ss_pred CCceEEEEeCCCCHHHHHHH-HHHHHHh-cCCeEEEEEeCCccchhHHHHcCCcceeeccCHHHHHHHHHhCCCCceEEe
Confidence 34689999999876666654 4444444 3899999885 566678889999999999753321 1223333333
Q ss_pred cc---ceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCc----------e----------eE
Q psy3760 164 YQ---WEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLT----------P----------YI 220 (306)
Q Consensus 164 ~~---~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~----------~----------~~ 220 (306)
+. +++.++. ++--+++||.+---|..+.+.....+-...|+..|+- + +.
T Consensus 82 ~~~~~~P~glYS--------~k~ksl~dl~~Ga~IaIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~t~~DI~~Npk~l 153 (249)
T 4got_A 82 GAVHLEPFGIYS--------KTYKSLKDLPDGATIILTNNVAEQGRMLAMLENAGLITLDSKVETVDATLKDIKKNPKNL 153 (249)
T ss_dssp EEEEECCCEEEC--------SSCSSGGGCCTTCEEEEECCGGGHHHHHHHHHHTTSCEECTTSCGGGCCGGGEEECTTCC
T ss_pred eeeeeccccccc--------cCcCchhhcCCCCEEEEecCccchHHHHHHHHHCCCEEECCCCCccccCcchhhhCCccc
Confidence 32 3344442 2234888997777777777666666777788888651 0 11
Q ss_pred EEEecCHHHHHHHHHhc-cceeeeec-ceecccccC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhh
Q psy3760 221 VLETINSDIIKTYVELR-MGIGIIAS-IAFDSNRDK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLN 296 (306)
Q Consensus 221 ~~~~~~~~~~~~~v~~g-~gi~~~p~-~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 296 (306)
.+.--+...+.+.+..+ ...++++. +....--.+ +...+.-.. ...+-..++++++...+|.+++|++.+++.--
T Consensus 154 ~~~e~~aaql~r~l~d~~vD~avin~n~a~~agl~p~~dal~~E~~~-~~py~Nvivvr~~d~d~~~ik~lv~a~~s~ev 232 (249)
T 4got_A 154 EFKKVAPELTAKAYENKEGDAVFINVNYAIQNKLNPKKDAIEVESTK-NNPYANIIAVRKGEEDSAKIKALMEVLHSKKI 232 (249)
T ss_dssp EEEEECTTTHHHHHHTTCSSEEEECHHHHHHTTCCHHHHCSEECCST-TCCCCEEEEEETTCTTSHHHHHHHHHHTSHHH
T ss_pred cceecCHhHhhhhcccccccEEEechhHHHHcCCChhhhhhcccCCC-CCceEEEEEEcccccCCHHHHHHHHHHCCHHH
Confidence 22222334455555553 34555554 433321111 122222111 12234567788888899999999999876544
Q ss_pred HHHHHh
Q psy3760 297 RKFINK 302 (306)
Q Consensus 297 ~~~~~~ 302 (306)
+.++++
T Consensus 233 k~~I~~ 238 (249)
T 4got_A 233 KDFIEK 238 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 445543
No 206
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=96.75 E-value=0.0073 Score=48.03 Aligned_cols=204 Identities=9% Similarity=0.056 Sum_probs=124.6
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC--ChhHHHHHHHcCCeeEEE-Ec--------cccCC--CC---
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG--NPKQITEMIRNDQADIAI-VT--------EILSP--SD--- 156 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~--~~~~~~~~l~~~~~Di~i-~~--------~~~~~--~~--- 156 (306)
+.|+||....-...++..++..+.+...++++++... +...+.+.|.+|++|+.. -+ .+... .+
T Consensus 12 ~~I~ig~~~~te~~il~~i~~~~Le~~~G~~V~~~~~lg~~~~~~~al~~G~iDv~~~eytGt~~~~~l~~~~~~~~~~~ 91 (284)
T 3r6u_A 12 QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKA 91 (284)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHSSCCEEEEEEECSHHHHHHHHHTTSCSEEEEEEHHHHHHHTTCCCCCCSHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCeEEEecCCchHHHHHHHHcCCCCEEehhccchhHHHhcCCCCCCCHHHH
Confidence 6899999999889999999999888877888888853 666789999999999999 31 11110 00
Q ss_pred ------------Cceee--ccccceEEEEecCCCCCCCCCCcChhhhcCCC---eEeecCCCCcH--HHHHHHHHhCCCc
Q psy3760 157 ------------KLISI--PCYQWEYVIIVPLDHPLLLLNSISLKEISNYP---LITYDLSFSGR--IKLDREFSLQKLT 217 (306)
Q Consensus 157 ------------~~~~~--~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~---~i~~~~~~~~~--~~~~~~~~~~~~~ 217 (306)
++... -.+...+.+++++...-. ..--+++||..++ .+..+..+..+ +-+..+.+..|+.
T Consensus 92 ~~~~~~~~~~~~~l~~l~~~~~~~~~~laV~~~~a~~-~~l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~l~~~YGl~ 170 (284)
T 3r6u_A 92 LALTQREFKKRYDLKWYDSYGFDNTYAFTVSKELADQ-YHLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMT 170 (284)
T ss_dssp HHHHHHHHHHHHCEEECCCCSCBCCEEEEEEHHHHHH-HTCCBSGGGGGGGGGCEEEECTTGGGCSSSSHHHHHHHHCCC
T ss_pred HHHHHHHhHhhcCeEEeccCCcCCeEEEEEeHHHHhH-cCCCCHHHHHhhhhceeeccCcccccCchhHHHHHHHHcCCC
Confidence 11111 112346778888763111 1234778887763 23333321111 1233445566776
Q ss_pred eeEEEEecCHHHHHHHHHhccce---eeeecceecccccCCceeeecCC-CCccceEEEEEeCCc-cccHHHHHHHHHHh
Q psy3760 218 PYIVLETINSDIIKTYVELRMGI---GIIASIAFDSNRDKNLRSISASH-LFGTTISRVIIKQGT-YLRSYVYSFIKLLS 292 (306)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~g~gi---~~~p~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~ 292 (306)
... +...+...+.+++.+|..+ +..|+++.. ..+|+.+.-+. ..+......+.+++- ...|.+.++++-+.
T Consensus 171 ~~~-~~~~~~g~~~~A~~~~~~~v~~~wsp~~~~~---~~dL~~LeD~k~~fp~~~v~~vvr~~~~~~~P~~~~~L~~l~ 246 (284)
T 3r6u_A 171 FGG-TYPMQIGLVYDAVKSGKMDIVLAYSTDGRIK---SYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKKML 246 (284)
T ss_dssp CSE-EEECCGGGHHHHHHHTSCSEEEEETTCHHHH---HTTEEECBCTTCCSCCCBEEEEEEHHHHHHSTTHHHHHHTTT
T ss_pred ccc-ccccCHHHHHHHHHcCCCeEEEEeCCCchhh---cCCceEcCCCcccCCccceeEEEcHHhhhHCHHHHHHHHHHH
Confidence 543 3334555778889888544 345555544 34688776554 234456677777653 23578888888887
Q ss_pred HHhhHHHHH
Q psy3760 293 PKLNRKFIN 301 (306)
Q Consensus 293 ~~~~~~~~~ 301 (306)
..+......
T Consensus 247 ~~lt~~~m~ 255 (284)
T 3r6u_A 247 GKIDTATMQ 255 (284)
T ss_dssp TCCCHHHHH
T ss_pred ccCCHHHHH
Confidence 555444433
No 207
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=96.74 E-value=0.082 Score=41.76 Aligned_cols=185 Identities=9% Similarity=-0.032 Sum_probs=93.7
Q ss_pred cCCCCcEEEEecccchhhhhHHHHHHHHHh-C-CCcEEEEEeCChhHHHHHHHcCCeeEEEEccc-cC-CCCCceeeccc
Q psy3760 89 AYDTGNLTIATTHTQARYALPKIIKEFTIQ-F-PKVKLSLLQGNPKQITEMIRNDQADIAIVTEI-LS-PSDKLISIPCY 164 (306)
Q Consensus 89 ~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~-~-p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~-~~-~~~~~~~~~l~ 164 (306)
...+.+|+||..+.... .+-.+. ..+. + .++++++...+...+.+.|.+|++|++++... .. ...++....+.
T Consensus 6 ~~~~~~l~l~~~p~~~~--~p~~~a-~~~G~f~~Gl~ve~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
T 1zbm_A 6 HHHSHKIRVAHTPDADD--AFMFYA-MTHGKVDTWLEIEHVIEDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAG 82 (280)
T ss_dssp -CTTCEEEEEECSSHHH--HHHHHH-HHTTCSCCSCEEEEEECCHHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSC
T ss_pred ccccceEEEeecCCchH--HHHHHH-HHcCCcCCCceEEEEeCCHHHHHHHHHcCCCCEEEECHHHHHHhcCCCcEEeec
Confidence 34567899999876443 222222 2221 1 16788887788888899999999999986411 11 12233332211
Q ss_pred ---c-ceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHH-HHHHHHhCCCceeEEEEecCHHHHHHHHHhc--
Q psy3760 165 ---Q-WEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIK-LDREFSLQKLTPYIVLETINSDIIKTYVELR-- 237 (306)
Q Consensus 165 ---~-~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g-- 237 (306)
. ....++++++. +||.+.++.....+ ..... +..++... ++ ...+...+..++.+|
T Consensus 83 ~~~~~~~~~vlv~~~~----------~DLkGK~Iav~~~~-s~~~~ll~~~l~~~----~~--~~~~~~~~~~al~~G~v 145 (280)
T 1zbm_A 83 ASVGDGYGPVVVAKSE----------ISLDGKRIAVPGRY-TTANLLLKLAVEDF----EP--VEMPFDRIIQAVLDEEV 145 (280)
T ss_dssp CEEESSCCCEEEESSC----------CCCTTCEEEESCTT-SHHHHHHHHHCSSC----EE--EECCGGGHHHHHHTTSS
T ss_pred cccCCCeeEEEEEcCc----------hhcCCCEEEecCCC-cHHHHHHHHHhccC----ce--EecCHHHHHHHHHcCCC
Confidence 1 11223444331 77888776664333 23233 33333321 22 223455677778887
Q ss_pred cceeeeecceecccccCCceee-ecC-----CCCccceE-EEEEeCCccccHHHHHHHHHHhHHh
Q psy3760 238 MGIGIIASIAFDSNRDKNLRSI-SAS-----HLFGTTIS-RVIIKQGTYLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 238 ~gi~~~p~~~~~~~~~~~l~~~-~~~-----~~~~~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~ 295 (306)
+++.+....... ....++..+ .+. ........ .++.+++- .+..+++|.+.+.+..
T Consensus 146 Da~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~p~~v~~~~~a~~~a~ 208 (280)
T 1zbm_A 146 DAGLLIHEGQIT-YADYGLKCVLDLWDWWSEQVKLPLPLGLNAIRRDL-SVEVQEEFLRAMRESI 208 (280)
T ss_dssp SEEEECSGGGGT-GGGGTCEEEEEHHHHHHTTCSSCEEEEEEEEETTS-CHHHHHHHHHHHHHHH
T ss_pred CEEEEechHHhH-HHhcCCeEeccHHHHHHHhhCCCCCeeEEEEcccC-CHHHHHHHHHHHHHHH
Confidence 443322222222 222334322 211 10111223 34556654 4677888888776553
No 208
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=96.68 E-value=0.017 Score=46.28 Aligned_cols=189 Identities=9% Similarity=0.042 Sum_probs=99.9
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCC-hhHHHHHHHcCCeeEEEEccccCC-----CC-Cceeecccc
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN-PKQITEMIRNDQADIAIVTEILSP-----SD-KLISIPCYQ 165 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~-~~~~~~~l~~~~~Di~i~~~~~~~-----~~-~~~~~~l~~ 165 (306)
..|+||+. +.....+ ..+..+.+.. ++.+++...+ .....+.|.+|++|+++..+.+.- .. +.....+..
T Consensus 39 ~~i~IG~~-~~~~~~~-~~~~~~~~~~-G~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~~~~~l~~~~~~~~g~~l~~v~~ 115 (295)
T 1p99_A 39 KKVTIGVA-SNDTKAW-EKVKELAKKD-DIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALST 115 (295)
T ss_dssp -CEEEEES-SSCCHHH-HHHHHHHGGG-TCCEEEEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHHHHHCTTCCEEEEEE
T ss_pred CeEEEEEe-CCcHHHH-HHHHHHHHHc-CCeEEEEEeCChHHHHHHHHcCCCCEEccCCHHHHHHHHHhcCCCCEEEEEe
Confidence 47999998 4333333 3333444443 7888888754 367899999999999985322110 11 222222221
Q ss_pred ---ceEEEEecCCCCCCCCCCcChhhh-cCCCeEeecCCCCcHHHHHHHHHhCCC------------------ce-eEEE
Q psy3760 166 ---WEYVIIVPLDHPLLLLNSISLKEI-SNYPLITYDLSFSGRIKLDREFSLQKL------------------TP-YIVL 222 (306)
Q Consensus 166 ---~~~~~v~~~~~~l~~~~~i~~~dl-~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------~~-~~~~ 222 (306)
.++.++ ..+--+++|| .+...... .+.........+++..|+ .| ++.+
T Consensus 116 ~~~~p~g~y--------s~~iksl~DL~~Gk~IAip-~~~s~~~~~l~lL~~~Gli~l~~~~~~~~t~~dI~~np~~v~~ 186 (295)
T 1p99_A 116 TVLAPLGIY--------SDKIKDVKKVKDGAKVVIP-NDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKI 186 (295)
T ss_dssp EEECCCEEE--------CSSCSCGGGCCTTCEEEEE-CSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEE
T ss_pred eccccceee--------cCCCCChHHcCCCCEEEec-CCCcHHHHHHHHHHHCCCccccCCCCCcCChhhhhcCCCceEE
Confidence 122222 1234579999 66665554 444445566678888886 11 2233
Q ss_pred EecCHHHHHHHHHhccceeeeecceecccccC--Cceeee-cCCC-CccceEEEEEeCCccccHHHHHHHHHHhH
Q psy3760 223 ETINSDIIKTYVELRMGIGIIASIAFDSNRDK--NLRSIS-ASHL-FGTTISRVIIKQGTYLRSYVYSFIKLLSP 293 (306)
Q Consensus 223 ~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~--~l~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 293 (306)
.--+...+..+...-+++.+-+.+....-..+ ....+. -... .......++.+++...++.+++|++.+.+
T Consensus 187 v~~~~~~~~~al~~VDaa~i~~~~a~~ag~~~~~~~i~~e~~~~~~~~~~~n~ivvr~~~~~~~~vk~l~~a~~s 261 (295)
T 1p99_A 187 TAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHS 261 (295)
T ss_dssp EEECGGGTTGGGGTSSEEEECHHHHHHTTCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGTTCHHHHHHHHHHHS
T ss_pred EEcCHHHHHHHhhcCCEEEECcHHHHHcCCCcccceEEecCCcccCCCceeEEEEEeCCccChHHHHHHHHHHCC
Confidence 32233334444444455554443433221111 222222 1110 11334456677776778999999998873
No 209
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.65 E-value=0.13 Score=41.58 Aligned_cols=196 Identities=9% Similarity=0.053 Sum_probs=100.5
Q ss_pred CCCCcEEEEecccchhh-hhHHHHHHHHHhCCCcEEEEEe--CChhHHHHHHHcCCeeEEEEccccC---CCCC---cee
Q psy3760 90 YDTGNLTIATTHTQARY-ALPKIIKEFTIQFPKVKLSLLQ--GNPKQITEMIRNDQADIAIVTEILS---PSDK---LIS 160 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~~-~l~~~l~~~~~~~p~~~i~~~~--~~~~~~~~~l~~~~~Di~i~~~~~~---~~~~---~~~ 160 (306)
....+|+||..+..... +....-..+.+.. ++++++.. .++..+.+.|.+|++|++++..... ...+ +..
T Consensus 12 ~~~~~l~ig~~~~~~~~p~~~A~~~G~~~~~-Gl~V~~~~~~~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~ 90 (321)
T 2x7q_A 12 HQLPTLKVAYIPEHFSTPLFFAQQQGYYKAH-DLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHV 90 (321)
T ss_dssp --CCCEEEEECCSGGGHHHHHHHHTTHHHHT-TCCEEEEECTTCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEE
T ss_pred cCCceEEEEeeCCccchHHHHHHHCCcHHHC-CceEEEEECCCCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEE
Confidence 34568999998765432 2211112233332 67777765 3344578999999999999752100 0112 322
Q ss_pred e-ccccce--EEEEecCCC-CCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHH-HhCCCceeE-EEEecCHHHHHHHH
Q psy3760 161 I-PCYQWE--YVIIVPLDH-PLLLLNSISLKEISNYPLITYDLSFSGRIKLDREF-SLQKLTPYI-VLETINSDIIKTYV 234 (306)
Q Consensus 161 ~-~l~~~~--~~~v~~~~~-~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~v 234 (306)
. .+...+ +.++++++. + .-+++|| .-|...........+...+ +..|+.+.+ ...+++...+..++
T Consensus 91 v~~~~~~~~~~~i~v~~ds~~-----i~s~~DL---K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al 162 (321)
T 2x7q_A 91 LDTYVKSPLLWAVSTGSNRDD-----VTDAKQL---KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSV 162 (321)
T ss_dssp EEEEECSCCEEEEEEESSCTT-----CSSGGGC---CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHH
T ss_pred EEEecCCCcceEEEECCCCCC-----CCChHHc---ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHH
Confidence 1 122223 356677664 3 2368888 3444443223333444444 567876522 23455777888888
Q ss_pred Hhc----cceeeeeccee-ccc-ccCCceeeecCCCCccceEEEEEeCCc--cccHHHHHHHHHHhHHh
Q psy3760 235 ELR----MGIGIIASIAF-DSN-RDKNLRSISASHLFGTTISRVIIKQGT--YLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 235 ~~g----~gi~~~p~~~~-~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~ 295 (306)
.+| ..=+++.+... ... ..+.+..+.-.. .+.....++.+++. ..+..+++|++.+.+..
T Consensus 163 ~~G~~~~~vDa~~~ep~~~~~~~~~g~~~~~~d~~-~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~ 230 (321)
T 2x7q_A 163 NLKDGVEGSDAFMWEYFTSKKYYDNHEIKQIDQIY-TPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGI 230 (321)
T ss_dssp TTCTTSCCCSEEEEEHHHHHHHHHTTSEEEEEEEE-CSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HcCCCccceEEEEecCccchhhccCCceEEccccC-CCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHH
Confidence 888 44444543322 112 334455432111 11112345555442 13566778877776543
No 210
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=96.55 E-value=0.0055 Score=49.07 Aligned_cols=187 Identities=11% Similarity=0.096 Sum_probs=103.8
Q ss_pred hhhhHHHHHHHHHhCCCcEEEEE-----------eCChhHHHHHHHcCCeeEEEEccccC--CCCCce-eeccccceEEE
Q psy3760 105 RYALPKIIKEFTIQFPKVKLSLL-----------QGNPKQITEMIRNDQADIAIVTEILS--PSDKLI-SIPCYQWEYVI 170 (306)
Q Consensus 105 ~~~l~~~l~~~~~~~p~~~i~~~-----------~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~~-~~~l~~~~~~~ 170 (306)
..+...++..+.+.. +++++++ ..+...++..|.+|++|+++...... ....+. +.++.....++
T Consensus 69 ~G~~vdll~~ia~~l-g~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~i 147 (294)
T 2rc8_A 69 YGYCIDLLEQLAEDM-NFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGI 147 (294)
T ss_dssp ESHHHHHHHHHHHHH-TEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEEE
T ss_pred eEEhHHHHHHHHHHc-CCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceEE
Confidence 345566666666553 6777763 34567899999999999998532111 112233 46788888999
Q ss_pred EecCCCCCCCCCCcChhhhc------CCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHh--ccceee
Q psy3760 171 IVPLDHPLLLLNSISLKEIS------NYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL--RMGIGI 242 (306)
Q Consensus 171 v~~~~~~l~~~~~i~~~dl~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--g~gi~~ 242 (306)
+++++.+ ..-+++||. +..+.... +......+.+.+...+.... .+.+++...++.++.+ |..=++
T Consensus 148 ~~~~~~~----~i~~~~dL~~~~~~~g~~vg~~~-gs~~~~~l~~~~~~~~~~i~-~~~~~~~~~~~~~l~~~~GrvDa~ 221 (294)
T 2rc8_A 148 LVRTRGT----ELSGIHDPKLHHPSQGFRFGTVR-ESSAEDYVRQSFPEMHEYMR-RYNVPATPDGVQYLKNDPEKLDAF 221 (294)
T ss_dssp EEETTSC----CCCSTTCHHHHSCCTTCCEECBT-TSHHHHHHHHHCHHHHHHHG-GGCBSSHHHHHHHHHSSSCCCSEE
T ss_pred EEECCCC----CcCChhhhhhcCcccCeEEEEEc-CChHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHhccCceeEE
Confidence 9988753 123677887 66666544 33333333332211110000 1246788999999999 754444
Q ss_pred e-ecceeccc--ccC--CceeeecCCCCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHhh
Q psy3760 243 I-ASIAFDSN--RDK--NLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINKI 303 (306)
Q Consensus 243 ~-p~~~~~~~--~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (306)
+ ....+... ..+ .+..+. .......++++.+++. +....|-+.|.+..+....+++
T Consensus 222 i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ia~~k~~---~l~~~in~al~~l~~~G~~~~l 282 (294)
T 2rc8_A 222 IMDKALLDYEVSIDADCKLLTVG--KPFAIEGYGIGLPPNS---PLTSNISELISQYKSHGFMDVL 282 (294)
T ss_dssp EEEHHHHHHHHHTCSSSCEEECS--CCEEEEEECCEECTTC---THHHHHHHHHHHHHHTTHHHHH
T ss_pred EecHHHHHHHHhhCCCCCEEEcC--CcccccceEEEecCCC---HHHHHHHHHHHHHHhCCCHHHH
Confidence 3 33333222 222 233332 2233456777788774 4555555555544444444444
No 211
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=96.52 E-value=0.0031 Score=54.55 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=57.4
Q ss_pred CchhhHHHHHHHHHh--c-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-----CCCc-cccCHhHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQ--N-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-----GKRI-RGLTKPGQAILRSIE 71 (306)
Q Consensus 1 m~~~~l~~f~~v~~~--~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-----~~~~-~~lT~~G~~l~~~a~ 71 (306)
++..++.++..+.+. + .+.+.-|+.+++++|++|+.|++||+. | |+.|. +|.+ +.||+.|+.+++.+.
T Consensus 402 lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~-g--~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~ 478 (487)
T 1hsj_A 402 LNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDL-K--LLSKKRSLQDERTVIVYVTDTQKANIQKLI 478 (487)
T ss_dssp CCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTT-T--TSCCEECCSSSSCCEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEeecCCCCCCCeEEEEECHHHHHHHHHHH
Confidence 456788899999887 3 278999999999999999999999986 4 44442 2332 389999999988887
Q ss_pred HHHHH
Q psy3760 72 IIMQE 76 (306)
Q Consensus 72 ~il~~ 76 (306)
+..+.
T Consensus 479 ~~~~~ 483 (487)
T 1hsj_A 479 SELEE 483 (487)
T ss_dssp HHHGG
T ss_pred HHHHH
Confidence 76554
No 212
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=96.50 E-value=0.0027 Score=39.67 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=25.6
Q ss_pred HHHHHhcCCHHHHHHHhCCCchHHHHHHHHH
Q psy3760 10 REAVRQNFNLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 10 ~~v~~~~~s~~~aA~~l~isq~~~s~~i~~L 40 (306)
.++.+++++.++||+.||||++|+.+.|+++
T Consensus 48 ~aL~~~~GN~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 48 RIYEMCDRNVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp HHHHHTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred HHHHHhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 3455554499999999999999999999864
No 213
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=96.48 E-value=0.0042 Score=36.86 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHhcCCHHHHHHHhCCCchHHHHHHHHHH
Q psy3760 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIELE 41 (306)
Q Consensus 11 ~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE 41 (306)
++.+++.+.++||+.||||++++.+.|+++.
T Consensus 27 aL~~~~gn~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 27 KLREYDYDLKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp HHHHTTTCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 3444444999999999999999999998763
No 214
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.46 E-value=0.0046 Score=38.31 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=42.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec--CCCc
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH--GKRI 56 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~--~~~~ 56 (306)
|.++++.-++.-...- |++.-|+.+++|.+||.+-|..||+.= +..|. .+|.
T Consensus 2 m~L~~Il~~L~~~g~v-sv~eLa~~l~VS~~TIRrdL~~Le~~G---~l~R~~~~Gga 55 (78)
T 1xn7_A 2 ASLIQVRDLLALRGRM-EAAQISQTLNTPQPMINAMLQQLESMG---KAVRIQEEPDG 55 (78)
T ss_dssp CCHHHHHHHHHHSCSB-CHHHHHHHTTCCHHHHHHHHHHHHHHT---SEEEECCCCCC
T ss_pred chHHHHHHHHHHcCCC-cHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEecCcCCC
Confidence 6677777777777777 899999999999999999999999874 45666 4443
No 215
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=96.43 E-value=0.0061 Score=48.54 Aligned_cols=183 Identities=13% Similarity=0.126 Sum_probs=96.5
Q ss_pred hhhhHHHHHHHHHhCCCcEEEEE-----------eCChhHHHHHHHcCCeeEEEEccccC--CCCCce-eeccccceEEE
Q psy3760 105 RYALPKIIKEFTIQFPKVKLSLL-----------QGNPKQITEMIRNDQADIAIVTEILS--PSDKLI-SIPCYQWEYVI 170 (306)
Q Consensus 105 ~~~l~~~l~~~~~~~p~~~i~~~-----------~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~~-~~~l~~~~~~~ 170 (306)
..+...++..+.+.. ++++++. ..+...++..|.+|++|+++...... ....+. +.|+.....++
T Consensus 58 ~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~ 136 (284)
T 2a5s_A 58 KGFCIDILKKLSRTV-KFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISV 136 (284)
T ss_dssp ESHHHHHHHHHHHHH-TCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEE
T ss_pred eEEhHHHHHHHHHHC-CCCEEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCEEE
Confidence 456666777776654 4566664 34567899999999999998531111 112333 46788888999
Q ss_pred EecCCCCCCCCCCc---Chhhhc-CCCeEeecCCCCcHHHHHHHHHhCCCceeEE-EEecCHHHHHHHHHhccc-eeeee
Q psy3760 171 IVPLDHPLLLLNSI---SLKEIS-NYPLITYDLSFSGRIKLDREFSLQKLTPYIV-LETINSDIIKTYVELRMG-IGIIA 244 (306)
Q Consensus 171 v~~~~~~l~~~~~i---~~~dl~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~g~g-i~~~p 244 (306)
+++++.++...... ++++|. +..+.....+. ....+.+.+...+ .... +..++...++.++.+|.. ..+..
T Consensus 137 ~~~~~~~~~~~~dl~~~~~~~l~~~~~vg~v~~~s-~~~~l~~~~~~~~--~~i~~~~~~~~~~~l~~l~~G~vDa~i~d 213 (284)
T 2a5s_A 137 MVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGS-TERNIRNNYPYMH--QYMTRFNQRGVEDALVSLKTGKLDAFIYD 213 (284)
T ss_dssp EEETTCCCCSTTSHHHHSGGGSSSCCCEECCTTSH-HHHHHHTTCHHHH--HHHGGGCCSSHHHHHHHHHTTSCSEEEEE
T ss_pred EEECCcccccccccccCChhHcCCCceEEEEeCCc-hHHHHHHHHHHHH--HHHHhccCCCHHHHHHHHHcCCeeEEEEc
Confidence 99988764432211 234444 34454443332 2222211111000 0011 113688999999999965 44444
Q ss_pred cceeccc--ccCC--ceeeecCCCCccceEEEEEeCCccccHHHHHHHHHH
Q psy3760 245 SIAFDSN--RDKN--LRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLL 291 (306)
Q Consensus 245 ~~~~~~~--~~~~--l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 291 (306)
...+..+ ..+. +..+..........++++.+++......+.+.+..+
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l 264 (284)
T 2a5s_A 214 AAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQF 264 (284)
T ss_dssp HHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCEEEeCCccccccCceEEEecCCCHHHHHHHHHHHHH
Confidence 4433322 2222 333321122334577888888754333333333333
No 216
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=96.42 E-value=0.16 Score=43.04 Aligned_cols=202 Identities=9% Similarity=-0.039 Sum_probs=106.8
Q ss_pred CCCcEEEEecccchhh-hhHHHHHHHHHhCCCc-EEEEEeC-ChhHHHHHHHcCC----eeEEEEccccC---------C
Q psy3760 91 DTGNLTIATTHTQARY-ALPKIIKEFTIQFPKV-KLSLLQG-NPKQITEMIRNDQ----ADIAIVTEILS---------P 154 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~-~l~~~l~~~~~~~p~~-~i~~~~~-~~~~~~~~l~~~~----~Di~i~~~~~~---------~ 154 (306)
....|+||..+..... +....-..|.+++ ++ .+++... +...+.+.|.+|+ +|++++..+.. .
T Consensus 34 e~~~lriG~~~~~~~apl~vA~~~G~f~~~-Gl~~Vel~~~~s~~~~~~al~~G~~~~~~D~a~~~~~~~~~~~~g~~~~ 112 (429)
T 2i49_A 34 ETANIKLGYIPIVEAAPLIIAQEKGFFAKY-GMTGVEVSKQANWASARDNVTIGSQGGGIDGGQWQMPMPHLITEGIITN 112 (429)
T ss_dssp SCSEEEEEECSSGGGHHHHHHHHTTHHHHT-TCCEEEEEECSSHHHHHHHHHHTGGGTSCSEEEECTTHHHHHHTTTTTT
T ss_pred CCceEEEEeccchhhHHHHHHHHCChHHHc-CCCeeEEEEcCCHHHHHHHHHcCCCCCceeEEEeccHHHHHHHcCcccc
Confidence 3457999997753221 1111112244444 78 8888775 4678999999999 99999731100 0
Q ss_pred CCCceee---ccccceEEEEecCCCCCCCCCC----c-C-hhhh-c--CC--CeEeecCCCCcHHHHHHHHHhCCCcee-
Q psy3760 155 SDKLISI---PCYQWEYVIIVPLDHPLLLLNS----I-S-LKEI-S--NY--PLITYDLSFSGRIKLDREFSLQKLTPY- 219 (306)
Q Consensus 155 ~~~~~~~---~l~~~~~~~v~~~~~~l~~~~~----i-~-~~dl-~--~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~- 219 (306)
..+.... .+......++++++..-..-.. + + ++|| . +. .+.....+......+..++...|+.|.
T Consensus 113 ~~g~~~~~v~~~~~~g~~i~v~~~~~~s~i~~~~~~lk~~i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~ 192 (429)
T 2i49_A 113 GNKVPMYVLAQLITQGNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDT 192 (429)
T ss_dssp TCCCCEEEEEECCBCCEEEEECGGGTTTTCSSCCGGGHHHHHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTT
T ss_pred CCCCCEEEEEEeccCCcEEEEecchhhcccccchHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCC
Confidence 1111211 1223345566665532111000 1 1 5888 6 65 444433454444566788999999873
Q ss_pred -EEEEecCHHHHHHHHHhc--cceeeeecceeccc-ccC-CceeeecCCCCc-cceEEEEEeCCc--cccHHHHHHHHHH
Q psy3760 220 -IVLETINSDIIKTYVELR--MGIGIIASIAFDSN-RDK-NLRSISASHLFG-TTISRVIIKQGT--YLRSYVYSFIKLL 291 (306)
Q Consensus 220 -~~~~~~~~~~~~~~v~~g--~gi~~~p~~~~~~~-~~~-~l~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~~~~~~l 291 (306)
+.+..-....+..++.+| +++++ .+...... ..+ ..+.+...+..+ .....++.+++. .....+++|++.+
T Consensus 193 DV~~v~~~~~~~~~aL~~G~iDa~~~-~eP~~~~a~~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~ 271 (429)
T 2i49_A 193 DIDLLAVPPAETVQGMRNGTMDAFST-GDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGI 271 (429)
T ss_dssp TSEEEECCHHHHHHHHHHTCCCEEEE-ETTHHHHHHHTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHH
T ss_pred cEEEEECChHHHHHHHHcCCccEEEe-ccchHHHHHHCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHH
Confidence 555545677888888888 66544 33332222 222 223333222111 112334445432 2356778888777
Q ss_pred hHH
Q psy3760 292 SPK 294 (306)
Q Consensus 292 ~~~ 294 (306)
.+.
T Consensus 272 ~~A 274 (429)
T 2i49_A 272 MEA 274 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 217
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=96.37 E-value=0.0056 Score=35.92 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
+.++|..+.+-. |....|+.||+|.+|+..+++++.+.||+
T Consensus 3 e~~vl~l~~~g~-s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 3 ERQVLKLIDEGY-TNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHHHHTSC-CSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 456666666655 99999999999999999999999999987
No 218
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=96.29 E-value=0.0055 Score=48.10 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCcee
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDI 48 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~L 48 (306)
+.++++.+-.++++|+++||++|+|...|+.++|+++|+.+|..|
T Consensus 197 ~ll~TL~~yl~~~~~~~~tA~~L~iHrNTl~yRL~ri~~l~g~dl 241 (262)
T 3onq_A 197 PTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDA 241 (262)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCcCC
Confidence 346777777787559999999999999999999999999999865
No 219
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=96.27 E-value=0.034 Score=37.98 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=56.8
Q ss_pred chhhHHHHHHHHHhcC---CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec---CCC--ccccCHhHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQNF---NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH---GKR--IRGLTKPGQAILRSIEII 73 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~---s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~---~~~--~~~lT~~G~~l~~~a~~i 73 (306)
+-.+.+++..+.+.+. |...-|+.+++|+||+++.|+.||+ .|.---.+. +++ .+-.+..+..+++..++.
T Consensus 25 t~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~-~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~ 103 (123)
T 3r0a_A 25 TKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE-KEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKI 103 (123)
T ss_dssp CHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH-TTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHH
Confidence 3456778888887652 6899999999999999999999995 454332211 222 112344688999999888
Q ss_pred HHHHHHHHH
Q psy3760 74 MQEIEGLKK 82 (306)
Q Consensus 74 l~~~~~~~~ 82 (306)
++.+.+...
T Consensus 104 ~~~~~~~~~ 112 (123)
T 3r0a_A 104 VQSWADRLG 112 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776554
No 220
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=96.25 E-value=0.12 Score=40.95 Aligned_cols=141 Identities=11% Similarity=0.124 Sum_probs=78.9
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhC--CCcEEEEEe-CChhHHHHHHHcCCeeEEEEcccc-----CCCCCceeecc
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQF--PKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEIL-----SPSDKLISIPC 163 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~--p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~-----~~~~~~~~~~l 163 (306)
..+||||.........+..+ +.+.. -++++++.. .+.+++.+.+.+|++|++++.... .....+.....
T Consensus 4 ~~~irvg~~~~~~~~~~~~~---~~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~i~~~ 80 (283)
T 3hn0_A 4 DTVIKVSVLRGPSVIAFADW---LENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPMINAANLYNKGIKIKLAGC 80 (283)
T ss_dssp CCEEEEEEESSTHHHHTHHH---HHSCCEETTEEEEEEEESCHHHHHHHHHTTCCSEEEEEHHHHHHHHHTTCSCEEEEE
T ss_pred cceEEEEecCCCcHHHHHHH---HhccccccCccEEEEEeCCHHHHHHHHHCCCCCEEEEcHHHHHHHHHCCCCeEEEEE
Confidence 45899999887543333333 22222 256666654 467789999999999999974210 01112222211
Q ss_pred ccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEec-CHHHHHHHHHhc-ccee
Q psy3760 164 YQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETI-NSDIIKTYVELR-MGIG 241 (306)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~g-~gi~ 241 (306)
.......+++++. |.+.+......+......+..++++.|+..+++ ... +...+..++.+| .-.+
T Consensus 81 ~~~g~~~lv~~~~------------LkGK~Iav~~~gs~~~~ll~~~L~~~Gldv~~~-~~~~~~~~~~~al~~G~vDa~ 147 (283)
T 3hn0_A 81 PIWGTLYLVEKTP------------LKEPALYVFGNGTTPDILTRYYLGRQRLDYPLN-YAFNTAGEITQGILAGKVNRA 147 (283)
T ss_dssp EECCCCEEEECSS------------CCSCCEECSSTTSHHHHHHHHHHHHHTCCCCEE-CSCCSHHHHHHHHHHTSCSEE
T ss_pred ecccEEEEEecCC------------CCCCEEEecCCCCcHHHHHHHHHHHcCCceEEE-EccCCHHHHHHHHHcCCCCEE
Confidence 1111112222221 667777766555545556677788888833222 233 577888888887 3344
Q ss_pred eeeccee
Q psy3760 242 IIASIAF 248 (306)
Q Consensus 242 ~~p~~~~ 248 (306)
++++...
T Consensus 148 ~~~eP~~ 154 (283)
T 3hn0_A 148 VLGEPFL 154 (283)
T ss_dssp EECTTHH
T ss_pred EecccHH
Confidence 4555443
No 221
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.25 E-value=0.011 Score=35.52 Aligned_cols=40 Identities=8% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHHHHHHHhc--CCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 6 FRFVREAVRQN--FNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 6 l~~f~~v~~~~--~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
.+++..+.+.+ .|.+.-|+.+++|++++++.|+.||++ |.
T Consensus 13 ~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~-G~ 54 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE-DR 54 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT-TS
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-Cc
Confidence 34444444432 279999999999999999999999985 44
No 222
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=96.23 E-value=0.0056 Score=39.41 Aligned_cols=32 Identities=19% Similarity=0.081 Sum_probs=26.5
Q ss_pred HHHHHhcCCHHHHHHHhCCCchHHHHHHHHHH
Q psy3760 10 REAVRQNFNLTEAAKALYTSQPGVSKAIIELE 41 (306)
Q Consensus 10 ~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE 41 (306)
.++.+++++.++||+.||||++|+.+.|+++.
T Consensus 58 ~aL~~~~gn~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 58 TALRHTQGHKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 34455544999999999999999999999874
No 223
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=96.21 E-value=0.00076 Score=55.47 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIE 78 (306)
Q Consensus 4 ~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~ 78 (306)
++..++..+.+.+ -+...-|+.|++|++|++|-|++||++ -|..|..+++ .||+.|+.+++.+.++...+.
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~---Glv~~~~~gi-~LT~~G~~~~~~~~~~~~~~~ 92 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQL---NLIEPSKSGM-TLTERGLEVYQGLELVMNQLL 92 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC---CCEEEEecce-EEcHHHHHHHHHHHHHHHHhh
Confidence 4455555555544 245667999999999999999999875 3455566788 799999999999988888763
No 224
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.20 E-value=0.0051 Score=34.27 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHH
Q psy3760 8 FVREAVRQNFNLTEAAKALYTSQPGVSKAIIELE 41 (306)
Q Consensus 8 ~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE 41 (306)
.++.....|.|....|+.+++|.+||.+.+++.+
T Consensus 13 ~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 13 QLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 3444455566999999999999999999998765
No 225
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=96.20 E-value=0.01 Score=37.32 Aligned_cols=45 Identities=7% Similarity=0.065 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
+-++.++|..+++.. |..+.|+.||+|.+||.++++++.+.|+..
T Consensus 23 t~~e~~vl~l~~~g~-s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 23 TPRERDILKLIAQGL-PNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp CHHHHHHHHHHTTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 345566777766555 999999999999999999999999999874
No 226
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.18 E-value=0.047 Score=42.51 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhc--CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-CCCccccCHhHHHH
Q psy3760 4 HQFRFVREAVRQN--FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-GKRIRGLTKPGQAI 66 (306)
Q Consensus 4 ~~l~~f~~v~~~~--~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-~~~~~~lT~~G~~l 66 (306)
+.++++..+.+.+ .|++.-|+.+++++||+++.++.|++ .|. ..|. +++. +|++....+
T Consensus 9 r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~-~G~--v~~~~~~~Y-~lg~~~~~l 70 (249)
T 1mkm_A 9 KAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE-KGF--VLRKKDKRY-VPGYKLIEY 70 (249)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH-TTS--EEECTTSCE-EECTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCc--EEECCCCcE-EECHHHHHH
Confidence 3456666666532 38999999999999999999999998 344 3443 5566 798876443
No 227
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=96.16 E-value=0.013 Score=38.27 Aligned_cols=45 Identities=22% Similarity=0.121 Sum_probs=39.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
+-+..++|..+++-. |....|+.|++|.+||...++++.+.||+.
T Consensus 36 t~re~~Vl~l~~~G~-s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 36 SPKESEVLRLFAEGF-LVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp CHHHHHHHHHHHHTC-CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 446677787777665 999999999999999999999999999983
No 228
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=96.11 E-value=0.0075 Score=42.94 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=35.8
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
||-.+++++..+.+.+ .|++.-|+.+|+|+++++++|++||+.
T Consensus 1 ld~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 1 MDEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp CCHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5666777777776543 389999999999999999999999875
No 229
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=96.09 E-value=0.012 Score=41.96 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=34.5
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
||-.+.+++..+.+.+ .|++.-|+.+|+|++|++++|++||+.
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445667777676532 289999999999999999999999876
No 230
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=96.08 E-value=0.0066 Score=36.78 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=23.6
Q ss_pred HHHhcCCHHHHHHHhCCCchHHHHHHHH
Q psy3760 12 AVRQNFNLTEAAKALYTSQPGVSKAIIE 39 (306)
Q Consensus 12 v~~~~~s~~~aA~~l~isq~~~s~~i~~ 39 (306)
+...| |..+.|+.||||++|||+.+..
T Consensus 7 i~~~G-~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 7 VRHFG-DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHS-SHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHC-CHHHHHHHHCCCHHHHHHHHhC
Confidence 44568 9999999999999999999864
No 231
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=95.98 E-value=0.48 Score=38.15 Aligned_cols=207 Identities=10% Similarity=0.048 Sum_probs=111.2
Q ss_pred CCCcEEEEeccc--chhhhhHHHHHHHHHhCCCcEEEEEe--CChh-HHHHHHHcCCee---EEEEccc-----cC-CC-
Q psy3760 91 DTGNLTIATTHT--QARYALPKIIKEFTIQFPKVKLSLLQ--GNPK-QITEMIRNDQAD---IAIVTEI-----LS-PS- 155 (306)
Q Consensus 91 ~~~~l~I~~~~~--~~~~~l~~~l~~~~~~~p~~~i~~~~--~~~~-~~~~~l~~~~~D---i~i~~~~-----~~-~~- 155 (306)
..+.|+|-++.. =....+.+.+.+...+.-+..+.+.. +... ...+.+.++..| +++.... .. ..
T Consensus 15 P~kpi~liVp~~~GG~~D~~aR~la~~l~~~lg~~vvV~N~pGa~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~ 94 (312)
T 2f5x_A 15 PERPVNMVVPFAAGGPTDNVARSLAESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNP 94 (312)
T ss_dssp CSSCEEEEESSCTTSHHHHHHHHHHHHHHHHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCC
T ss_pred CCCCEEEEEeeCCccHHHHHHHHHHHHHHHHhCCCEEEEecCChHHHHHHHHHHhCCCCCcEEEEecCHHHHHHHHcCCC
Confidence 445666666543 33445566665554443345555544 3222 234667877777 8775321 00 11
Q ss_pred -----CCceee-ccccceEEEEecCCCCCCCCCCcChhhhcC--------CCeEeecCCCCcHHHHHHHHHhCCCceeEE
Q psy3760 156 -----DKLISI-PCYQWEYVIIVPLDHPLLLLNSISLKEISN--------YPLITYDLSFSGRIKLDREFSLQKLTPYIV 221 (306)
Q Consensus 156 -----~~~~~~-~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (306)
.++... .+...+.+++++++.|. -+++||.. ..+-....+....-....+++..|+....+
T Consensus 95 ~yd~~~df~pv~~~~~~~~~lvv~~ds~~-----~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~~~V 169 (312)
T 2f5x_A 95 GYEPYTSFEPIGLVVDVPMTIIARGDFPP-----NNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTI 169 (312)
T ss_dssp SSCTTTSEEEEEEEEEEEEEEEECTTCSC-----CSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCEEE
T ss_pred CCCcccccceeeecccCcEEEEEeCCCCC-----CCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCCeEEe
Confidence 233322 25677889999988763 37888853 233332223222223334456678876544
Q ss_pred EEecCHHHHHHHHHhc-cceeeeecceeccc-ccCCceeeecCCC--------C----------ccc--eEEEEEeCCcc
Q psy3760 222 LETINSDIIKTYVELR-MGIGIIASIAFDSN-RDKNLRSISASHL--------F----------GTT--ISRVIIKQGTY 279 (306)
Q Consensus 222 ~~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~-~~~~l~~~~~~~~--------~----------~~~--~~~l~~~~~~~ 279 (306)
.......+...+..| .-+++.....+..+ +.++++.+.+... . ... -..++.+++.+
T Consensus 170 -py~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p 248 (312)
T 2f5x_A 170 -PYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTP 248 (312)
T ss_dssp -ECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCC
T ss_pred -ccCChHHHHHHHHcCCccEEEechHHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCC
Confidence 345556677777777 33334433333333 5677777654210 0 011 23456677754
Q ss_pred ccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 280 LRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 280 ~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
...+.++-+.+.+.++....++.+
T Consensus 249 -~~vv~~l~~al~~~~~~p~~~~~~ 272 (312)
T 2f5x_A 249 -KPVVDKLVKSLQAGLADPKFQERM 272 (312)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCHHHHHHH
Confidence 667888888888877666655543
No 232
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.96 E-value=0.0063 Score=38.47 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=36.5
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHc
Q psy3760 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEEL 44 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~l 44 (306)
|.++++.-++.-...- |++.-|+.+++|.+||.+-|..||+.=
T Consensus 2 m~L~~Il~~L~~~g~v-sv~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 2 ASLMEVRDMLALQGRM-EAKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp CCTHHHHHHHHHSCSE-EHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHcCCC-cHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 6677777777666666 889999999999999999999999863
No 233
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=95.94 E-value=0.014 Score=41.54 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=34.1
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
|-.+.+++..+.+.| .|++.-|+.+|+|+++++++|++||+.
T Consensus 6 d~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 6 DDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 455667777776542 389999999999999999999999874
No 234
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=95.89 E-value=0.022 Score=36.48 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=38.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
+-+..++|..+++-. |....|+.|++|..||..+++++-+.||+
T Consensus 31 t~rE~~Vl~l~~~G~-s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 31 TPRECLILQEVEKGF-TNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp CHHHHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 446778888888554 99999999999999999999999999997
No 235
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=95.89 E-value=0.056 Score=44.62 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=65.5
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHH-HH-HHHhhccCCCCcE
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGL-KK-IGKEFSAYDTGNL 95 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~-~~-~~~~~~~~~~~~l 95 (306)
|+...|+..|+|++||||.|.. ..++ .++=+ +.+.+..+++.-. -+ ..+.+..+.++.|
T Consensus 11 Ti~diA~~aGVS~~TVSrvLn~-------------~~~V---s~~tr---~rV~~~a~~lgY~~pn~~a~~l~~~~s~~I 71 (366)
T 3h5t_A 11 TLASIAAKLGISRTTVSNAYNR-------------PEQL---SAELR---QRILDTAEDMGYLGPDPVARSLRTRRAGAI 71 (366)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHC-------------GGGS---CHHHH---HHHHHHHHHTTC--------------CCEE
T ss_pred CHHHHHHHhCCCHHHHHHHHCC-------------CCCC---CHHHH---HHHHHHHHHhCCCCCCHHHHHhhcCCCCEE
Confidence 6788999999999999999952 1122 22221 2222222222211 11 1122223333444
Q ss_pred EEEeccc----chhhhhHHHHHHHHHhCCCcEEEEEeCC------hhHHHHHHHcCCeeEEEEcc
Q psy3760 96 TIATTHT----QARYALPKIIKEFTIQFPKVKLSLLQGN------PKQITEMIRNDQADIAIVTE 150 (306)
Q Consensus 96 ~I~~~~~----~~~~~l~~~l~~~~~~~p~~~i~~~~~~------~~~~~~~l~~~~~Di~i~~~ 150 (306)
-+-++.. +...++..++..+.+...+..+.+...+ ..+.++.+.+..+|-.|+..
T Consensus 72 gvi~~~~~~~~~~~~~~~~~~~gi~~~a~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 136 (366)
T 3h5t_A 72 GVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYS 136 (366)
T ss_dssp EEEESSCTTHHHHSHHHHHHHHHHHHHSSSCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEES
T ss_pred EEEecCCccccccCHHHHHHHHHHHHHHhhCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEec
Confidence 4444442 4556788888888888778888876643 23478888999999988853
No 236
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=95.83 E-value=0.072 Score=35.37 Aligned_cols=75 Identities=9% Similarity=0.011 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCHHHHHHH----hCCCchHHHHHHHHHHHHcCceeEEe-----cC--CCccccCHhHHHHHHHHHHHHHH
Q psy3760 8 FVREAVRQNFNLTEAAKA----LYTSQPGVSKAIIELEEELSIDIFIR-----HG--KRIRGLTKPGQAILRSIEIIMQE 76 (306)
Q Consensus 8 ~f~~v~~~~~s~~~aA~~----l~isq~~~s~~i~~LE~~lg~~Lf~R-----~~--~~~~~lT~~G~~l~~~a~~il~~ 76 (306)
++..+.+...+...-++. +++|++++++.|++||+.= |+.| ++ +..+++|+.|+..+.........
T Consensus 14 IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~G---lI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~ 90 (108)
T 3l7w_A 14 ILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAG---YLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSV 90 (108)
T ss_dssp HHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT---SEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCC---CeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHH
Confidence 344444422133444455 5899999999999999862 2222 11 22338999999999888777777
Q ss_pred HHHHHHHHH
Q psy3760 77 IEGLKKIGK 85 (306)
Q Consensus 77 ~~~~~~~~~ 85 (306)
+....+.+-
T Consensus 91 ~~~~i~~~l 99 (108)
T 3l7w_A 91 YKMTIDGIV 99 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655443
No 237
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=95.77 E-value=0.023 Score=36.86 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
+-++.++|..+.+-. |....|+.||+|.+||.++++++.+.|+..
T Consensus 29 t~~e~~vl~l~~~g~-s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 29 TDQERTLLGLLSEGL-TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CHHHHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 345666777776655 999999999999999999999999999874
No 238
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=95.72 E-value=0.02 Score=40.43 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=33.4
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
|-.+.+++..+.+.+ .|++.-|+.+|+|+++++++|++||+.
T Consensus 4 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 4 DQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445556666666532 389999999999999999999999875
No 239
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=95.70 E-value=0.65 Score=37.51 Aligned_cols=198 Identities=12% Similarity=-0.005 Sum_probs=113.2
Q ss_pred CCCcEEEEeccc-chhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHc----CCeeEEEEccc----------c--C
Q psy3760 91 DTGNLTIATTHT-QARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRN----DQADIAIVTEI----------L--S 153 (306)
Q Consensus 91 ~~~~l~I~~~~~-~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~----~~~Di~i~~~~----------~--~ 153 (306)
..++|+|.+-.+ ....+...++..|.+++ +++|++...+..++...|.. ...|+.+.... . .
T Consensus 4 ~~~~l~v~~~~g~~~~~~~~~~~~~F~~~~-gi~V~~~~~~~~~~~~kl~~~~~~~~~Dv~~~~~~~~~~~~~~g~l~~l 82 (333)
T 3pu5_A 4 ADDHIYVTSSGGSFLENVRKHMAEPFEKQS-GVKVTLVPGTNPAHALKILSSRGTPPYDVAAFGGNDMYRLIRAKKLAQV 82 (333)
T ss_dssp TTCEEEEEECCHHHHHHHHHHTHHHHHHHH-CCEEEEEECCHHHHHHHHHHCCSSCSCSEEEECHHHHHHHHHTTCBCCC
T ss_pred cCCeEEEEeCCCcHHHHHHHHHHHHHHHHH-CCEEEEecCCCHHHHHHHHhCcCCCCCCEEEEChHHHHHHHHCcCcccC
Confidence 356889888664 33445568999999998 99999988888888888887 35899986411 0 0
Q ss_pred CC----------C------CceeeccccceEEEEecCCCCCCCCCCcChhhhcCC----Ce----EeecCCCC-c-HHHH
Q psy3760 154 PS----------D------KLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNY----PL----ITYDLSFS-G-RIKL 207 (306)
Q Consensus 154 ~~----------~------~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~----~~----i~~~~~~~-~-~~~~ 207 (306)
+. + ..-..++.....+++.+++.. ...+-+++||.+. .. ....+... . ...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~y~vP~~~~~~~l~ynkd~~--~~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 160 (333)
T 3pu5_A 83 DEKSVPSLADVPEKFKADWEGCGSLYDYSSVGIAYRPDKI--QGGVKSWKEFVERTVAGEFGKQVFFNNLSSNVRGAEVL 160 (333)
T ss_dssp CTTTCGGGGGSCGGGTGGGTTSCEECCBEEEEEEECTTTS--TTCCSSHHHHHHHHHHTTTTTCEEEECGGGTSSHHHHH
T ss_pred ChhhCCChhhCCHHHHhccCCccceeEeeeeEEEEchhhc--CCCCCCHHHHhChhhCCCccccccccCCcchhhHHHHH
Confidence 00 0 112355666778888888853 2456799998531 12 33332211 1 1111
Q ss_pred H-----------------HHHHhCCCceeEEEEecCHHHHHHHHHhcc-ceeeeecceeccc--c-cCCceeeecCCCCc
Q psy3760 208 D-----------------REFSLQKLTPYIVLETINSDIIKTYVELRM-GIGIIASIAFDSN--R-DKNLRSISASHLFG 266 (306)
Q Consensus 208 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~-gi~~~p~~~~~~~--~-~~~l~~~~~~~~~~ 266 (306)
. ++++. +.++.....++.....+++.+|. ++++.....+... . .+.+......+...
T Consensus 161 ~~~~~~~g~~~~~~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~g~~ 238 (333)
T 3pu5_A 161 SMFGKIYGSGYGDIEASIATLER--MKPHIFKFFTAFNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAV 238 (333)
T ss_dssp HHHHHHHSSSTTCHHHHHHHHHH--HGGGEEEEECSTTHHHHHHHHTSCSEEEEEHHHHHHHHHHTTTSSEEECCTTCCE
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH--hCcccccccCChHHHHHHHHcCCEEEEecccHHHHHHHhCCCCceeEEcCCCcee
Confidence 1 12222 23555344455556678888884 3444333322222 1 22244443222222
Q ss_pred cceEEEEEeCCccccHHHHHHHHHHhHH
Q psy3760 267 TTISRVIIKQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 294 (306)
....++...++. ...++++|++++.+.
T Consensus 239 ~~~~~~~i~k~s-~~~~A~~Fi~~l~s~ 265 (333)
T 3pu5_A 239 SSGPVMAVVKGG-KEDLAKAFMNYALGE 265 (333)
T ss_dssp EECCEEEEBTTS-CHHHHHHHHHHHTSH
T ss_pred eccceEEEeCCC-CHHHHHHHHHHHcCH
Confidence 223345556777 788999999999654
No 240
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=95.66 E-value=0.51 Score=35.99 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=99.2
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccCCC-----CCceee----
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILSPS-----DKLISI---- 161 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~~~-----~~~~~~---- 161 (306)
.+.+.=.++-+ -+...-.+.+.+.+.+-++.+.+... +++..+..|.+|++|++|++....+. +.-...
T Consensus 15 ~~~~~~~mPlp-ys~~yeGlatgl~~~f~gi~~~i~~mrg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~ 93 (231)
T 2ozz_A 15 INNVVCAMPLP-YTRLYEGLASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGP 93 (231)
T ss_dssp CSSEEEEECCC-CSHHHHHHHHHHHHTTTTSCEEEEECSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCT
T ss_pred cCcEEEEcccc-hhhhhhHHHHHHHHHhcCCcEEEEEccChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCC
Confidence 44554444444 45566777788888888999999999 99999999999999999997221111 011111
Q ss_pred ccc-cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccce
Q psy3760 162 PCY-QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240 (306)
Q Consensus 162 ~l~-~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi 240 (306)
+.+ ..+ .++++++.. ..+ .-|..+.++.-...+.+... .+.. +.+.=.+...++..+.+|.-=
T Consensus 94 ~yYv~~h-~li~~~~~~----~~i--------krVGvd~gS~dq~~lt~~~~-~g~~--Ve~ve~~y~~~i~~L~~G~ID 157 (231)
T 2ozz_A 94 HTYVGEH-QLICRKGES----GNV--------KRVGLDSRSADQKIMTDVFF-GDSD--VERVDLSYHESLQRIVKGDVD 157 (231)
T ss_dssp TSSSCCE-EEEEETTCG----GGC--------CEEEECTTCHHHHHHHHHHH-TTSC--CEEEECCHHHHHHHHHHTSCC
T ss_pred CccccCe-EEEEeCCCc----ccc--------EEEEecCCChhHHHHHhhhc-CCCe--EEEEECCHHHHHHHHHcCCcc
Confidence 222 223 344444421 111 56666666443333343332 4432 232326777778888888443
Q ss_pred eeee---cceecccccCCceeeecCC---CCccceEEEEEeCCccccHHHHHHHH
Q psy3760 241 GIIA---SIAFDSNRDKNLRSISASH---LFGTTISRVIIKQGTYLRSYVYSFIK 289 (306)
Q Consensus 241 ~~~p---~~~~~~~~~~~l~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~ 289 (306)
+.+- ..... ..+++...++.. ........++.++++ +.+++.++
T Consensus 158 A~Iwn~d~~~a~--~~~~l~~~~l~~~~~~~~~~eavI~v~k~n---~~L~~~ln 207 (231)
T 2ozz_A 158 AVIWNVVAENEL--TMLGLEATPLTDDPRFLQATEAVVLTRVDD---YPMQQLLR 207 (231)
T ss_dssp EEEEEC-CHHHH--HHTTEEEEECCSCHHHHHTTCEEEEEETTC---HHHHHHHH
T ss_pred EEEEcCcchhhh--cCCCcceeccccccccccCCceEEEEECCC---HHHHHHHH
Confidence 4433 22222 356677777766 222335557778874 34444444
No 241
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=95.64 E-value=0.016 Score=37.72 Aligned_cols=30 Identities=17% Similarity=-0.029 Sum_probs=25.1
Q ss_pred HHHHhcCCHHHHHHHhCCCchHHHHHHHHH
Q psy3760 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 11 ~v~~~~~s~~~aA~~l~isq~~~s~~i~~L 40 (306)
++.+++++.++||+.||||++++.+.|++.
T Consensus 66 aL~~~~gn~~~AA~~LGIsR~TL~rkLkk~ 95 (98)
T 1eto_A 66 VMQYTLGNQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp HHHHTTTCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 344544499999999999999999999875
No 242
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=95.64 E-value=0.054 Score=38.16 Aligned_cols=73 Identities=10% Similarity=-0.023 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHh--------CCCchHHHHHHHHHHHHcCceeEEe------cCCCccccCHhHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFNLTEAAKAL--------YTSQPGVSKAIIELEEELSIDIFIR------HGKRIRGLTKPGQAILRSIE 71 (306)
Q Consensus 6 l~~f~~v~~~~~s~~~aA~~l--------~isq~~~s~~i~~LE~~lg~~Lf~R------~~~~~~~lT~~G~~l~~~a~ 71 (306)
+.++..+.+...+...-++.+ .+|+++|+..|++||+. |.---.+ .++..++||+.|+.+++...
T Consensus 44 ~~IL~~L~~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~-GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~ 122 (145)
T 1xma_A 44 TIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKN-GYIKSYYGEETQGKRRTYYRITPEGIKYYKQKC 122 (145)
T ss_dssp HHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHT-TSEEEEEEEEC--CEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHC-CCEEEEEeccCCCCCeEEEEECHHHHHHHHHHH
Confidence 444555554221456666666 69999999999999985 2211111 11233489999999988765
Q ss_pred HHHHHHHH
Q psy3760 72 IIMQEIEG 79 (306)
Q Consensus 72 ~il~~~~~ 79 (306)
+....+.+
T Consensus 123 ~~~~~~~~ 130 (145)
T 1xma_A 123 EEWELTKK 130 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
No 243
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=95.62 E-value=0.098 Score=35.36 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHh------C--CCc-hHHHHHHHHHHHHcCceeEEe---c--CCCccccCHhHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFNLTEAAKAL------Y--TSQ-PGVSKAIIELEEELSIDIFIR---H--GKRIRGLTKPGQAILRSIE 71 (306)
Q Consensus 6 l~~f~~v~~~~~s~~~aA~~l------~--isq-~~~s~~i~~LE~~lg~~Lf~R---~--~~~~~~lT~~G~~l~~~a~ 71 (306)
+.++..+.+...+...-++.+ . +|+ ++++..|++||+. |.-=... . ++..+++|+.|+..++...
T Consensus 16 ~~IL~~L~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~-GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~ 94 (118)
T 2esh_A 16 STILLLVAEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEES-GFLSTEWDTTVSPPRKIYRITPQGKLYLREIL 94 (118)
T ss_dssp HHHHHHHHHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHT-TSEEEEEECSSSSCEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHC-CCeEEEeecCCCCCceEEEEChHHHHHHHHHH
Confidence 344445554222666777777 3 999 9999999999985 3222221 1 1223389999999988776
Q ss_pred HHHHHHHH
Q psy3760 72 IIMQEIEG 79 (306)
Q Consensus 72 ~il~~~~~ 79 (306)
.....+.+
T Consensus 95 ~~~~~~~~ 102 (118)
T 2esh_A 95 RSLEDMKR 102 (118)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 244
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=95.58 E-value=0.35 Score=38.98 Aligned_cols=207 Identities=10% Similarity=-0.007 Sum_probs=109.0
Q ss_pred CCCcEEEEecccc--hhhhhHHHHHHHHHhCCCcEEEEEe--CChhH-HHHHHHcCCee---EEEEccc-c------C-C
Q psy3760 91 DTGNLTIATTHTQ--ARYALPKIIKEFTIQFPKVKLSLLQ--GNPKQ-ITEMIRNDQAD---IAIVTEI-L------S-P 154 (306)
Q Consensus 91 ~~~~l~I~~~~~~--~~~~l~~~l~~~~~~~p~~~i~~~~--~~~~~-~~~~l~~~~~D---i~i~~~~-~------~-~ 154 (306)
+.+.|+|-++... ....+.+.+.+...+.-+..+.+.. +.... ..+.+.++..| ++++... . . .
T Consensus 17 P~~pi~iivp~~~GG~~D~~aR~la~~l~~~lg~~vvV~N~pGa~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~ 96 (314)
T 2dvz_A 17 PSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPK 96 (314)
T ss_dssp CSSCEEEEESSCTTSHHHHHHHHHHHHHHHHHTSCEEEEECCCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTT
T ss_pred CCCCEEEEEccCCccHHHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhCCCCCcEEEEecCcHHHHHHHHhCC
Confidence 4556777665432 3345555665554443344455543 32222 24667776666 8775311 0 0 1
Q ss_pred C------CCceee-ccccceEEEEecCCCCCCCCCCcChhhhcC----CC--eEeecC--CCCcHHHHHHHHHhCCCcee
Q psy3760 155 S------DKLISI-PCYQWEYVIIVPLDHPLLLLNSISLKEISN----YP--LITYDL--SFSGRIKLDREFSLQKLTPY 219 (306)
Q Consensus 155 ~------~~~~~~-~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~----~~--~i~~~~--~~~~~~~~~~~~~~~~~~~~ 219 (306)
. .++... .+...+.+++++++.|. -+++||.. .| +-.-.. +....-....+++..|+...
T Consensus 97 ~~~yd~~~df~pv~~~~~~~~~lvv~~ds~~-----~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~~ 171 (314)
T 2dvz_A 97 DLPYDPIKDFQPVTNFANTANVVAVNPKFPA-----KDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIV 171 (314)
T ss_dssp TCSCCTTTSEEEEEEEEEECEEEEECTTSSC-----SSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCCE
T ss_pred CCCCCchhccceeeEcccCCEEEEEeCCCCC-----CCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCCeE
Confidence 1 223222 25677889999998763 36788854 12 222222 32222233344566788765
Q ss_pred EEEEecCHHHHHHHHHhc-cceeeeecceeccc-ccCCceeeecC---------C-------CC--c--cceEEEEEeCC
Q psy3760 220 IVLETINSDIIKTYVELR-MGIGIIASIAFDSN-RDKNLRSISAS---------H-------LF--G--TTISRVIIKQG 277 (306)
Q Consensus 220 ~~~~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~-~~~~l~~~~~~---------~-------~~--~--~~~~~l~~~~~ 277 (306)
.+ .......+...+..| .-+++.....+..+ +.+.++.+.+. + .. . ..-..++.+++
T Consensus 172 ~V-py~G~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g 250 (314)
T 2dvz_A 172 HV-PYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKG 250 (314)
T ss_dssp EE-ECSSHHHHHHHHHHTSSSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETT
T ss_pred Ec-ccCCHHHHHHHHHcCCceEEEEcHHHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCC
Confidence 44 344555666666666 33444433333333 66777766432 1 00 0 11234566777
Q ss_pred ccccHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 278 TYLRSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
.+ .+.+.++.+.+.+.++....++.+
T Consensus 251 ~p-~~vv~~l~~al~~~~~~p~~~~~~ 276 (314)
T 2dvz_A 251 TP-MDVVNKLRDAAVVALKDPKVIKAL 276 (314)
T ss_dssp CC-HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHcCHHHHHHH
Confidence 64 677888888888877666655543
No 245
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=95.46 E-value=0.026 Score=36.24 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 3 ~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
-+..++|..+++-. |....|+.||+|.+||.++++++.+.|+..
T Consensus 32 ~~e~~vl~l~~~g~-s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 32 EREMEILLLIAKGY-SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp SHHHHHHHHHHTTC-CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 35566676666655 999999999999999999999999999863
No 246
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=95.43 E-value=0.031 Score=39.80 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=33.3
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
|-.+.+++..+.+.+ .|++.-|+.+|+|+++++++|++||+.
T Consensus 7 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 7 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 444556666666532 289999999999999999999999875
No 247
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=95.42 E-value=0.028 Score=40.97 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
|-.+.+++..+.+.+ .|++.-|+.+|+|++|++++|++||+.
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344556666665542 289999999999999999999999875
No 248
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.40 E-value=0.028 Score=40.92 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=34.1
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
|-.+.+++..+.+.+ .|++.-|+.+|+|++|++++|++||+.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445666777776532 289999999999999999999999875
No 249
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=95.38 E-value=0.0089 Score=33.52 Aligned_cols=36 Identities=3% Similarity=-0.069 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHH
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~L 40 (306)
+.+..+.+.+.|.|....|+.+|+|.+|+.+.+++.
T Consensus 10 ~~~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 10 EQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 344444555556699999999999999999988754
No 250
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=95.38 E-value=0.023 Score=32.38 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhCCCchHHHHHHH
Q psy3760 7 RFVREAVRQNFNLTEAAKALYTSQPGVSKAII 38 (306)
Q Consensus 7 ~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~ 38 (306)
+....+...|.|..+.|+.+|+|++|+++.++
T Consensus 22 ~~i~~l~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 22 SVAHELAKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33334445566999999999999999999875
No 251
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=95.37 E-value=0.1 Score=36.75 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHhC-CCchHHHHHHHHHHHHcCceeEEe----cCCC----ccccCHhHHHHHHH
Q psy3760 4 HQFRFVREAVRQ----NFNLTEAAKALY-TSQPGVSKAIIELEEELSIDIFIR----HGKR----IRGLTKPGQAILRS 69 (306)
Q Consensus 4 ~~l~~f~~v~~~----~~s~~~aA~~l~-isq~~~s~~i~~LE~~lg~~Lf~R----~~~~----~~~lT~~G~~l~~~ 69 (306)
..+.++..+... - |...-++.++ +|++||+++|+.|++.==++-... .++| ...||+.|+.++..
T Consensus 30 tR~~IL~~Ll~~p~~~~-ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~ 107 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVL-SVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA 107 (151)
T ss_dssp HHHHHHHHHHHSTTSCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence 456667777664 3 6777788888 999999999999997532222211 1111 23799999999977
No 252
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=95.37 E-value=0.17 Score=33.99 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=39.8
Q ss_pred CCCchHHHHHHHHHHHHcCceeEE----e-cCCCccccCHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3760 27 YTSQPGVSKAIIELEEELSIDIFI----R-HGKRIRGLTKPGQAILRSIEIIMQEIEGLKKIG 84 (306)
Q Consensus 27 ~isq~~~s~~i~~LE~~lg~~Lf~----R-~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~ 84 (306)
++++++++..|++||++==+.--. . .++...++|+.|+..+....+..+.+.+..+.+
T Consensus 44 ~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~i 106 (116)
T 3f8b_A 44 ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRVDKIIENL 106 (116)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999862111111 0 112233899999999988877777666655433
No 253
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=95.35 E-value=0.25 Score=38.72 Aligned_cols=181 Identities=9% Similarity=0.040 Sum_probs=88.4
Q ss_pred cEEEEecccchhhhhHHHHHHHHHhC--CCcEEEEEeCChhHHHHHHHcCCeeEEEEcccc--CCCCCceeecc----c-
Q psy3760 94 NLTIATTHTQARYALPKIIKEFTIQF--PKVKLSLLQGNPKQITEMIRNDQADIAIVTEIL--SPSDKLISIPC----Y- 164 (306)
Q Consensus 94 ~l~I~~~~~~~~~~l~~~l~~~~~~~--p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~--~~~~~~~~~~l----~- 164 (306)
+||||..+.... . +++-.+.+.+ .++++++...+...+.+.+.+|++|++++.... .....+..... .
T Consensus 3 ~l~ig~~~~~~~--~-p~~~a~~~g~~~~g~~v~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (272)
T 2czl_A 3 ALRLGFSPCPND--T-FIFYALVHGRVESPVPLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGALGR 79 (272)
T ss_dssp CEEEEECSSHHH--H-HHHHHHHTTSSCCSSCEEEEECCHHHHHHHHHTTCCSEEEEEHHHHTTCTTTEEECSSSCEEES
T ss_pred eEEEeecCCCcH--H-HHHHHHHhCccCCCceeEEecCCHHHHHHHHHcCCCCEEEecHHHHHhhhCceEEeecccccCC
Confidence 589999887533 2 2222222221 156667766777788899999999999875211 11122332221 1
Q ss_pred cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhc--cceee
Q psy3760 165 QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELR--MGIGI 242 (306)
Q Consensus 165 ~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g--~gi~~ 242 (306)
....+ +++++ +++||.+.++..... ......+.+.+.... +++ .. ....+..++.+| +++.+
T Consensus 80 ~~~~~-lv~~~---------~~~dLkGk~Ia~~~~-~~~~~~ll~~ll~~~---~~~-~~-~~~~~~~al~~G~vDa~~~ 143 (272)
T 2czl_A 80 GVGPL-VVARG---------PLQALEGLRVAVPGR-HTTAYFLLSLYAQGF---VPV-EV-RYDRILPMVAQGEVEAGLI 143 (272)
T ss_dssp SCCCE-EEESS---------CCSCCTTCEEEESCT-TSHHHHHHHHHCSSC---EEE-EC-CGGGHHHHHHTTSSSEEEE
T ss_pred CCceE-EEECC---------ChHHhCCCEEEeCCC-CchHHHHHHHHhccC---cee-ec-ChHHHHHHHHCCCCCEEEE
Confidence 11112 22222 167888877666543 333344444443322 222 22 334677777777 44443
Q ss_pred eecceecccccCCceee-ecCC------CCccceEEEEEeCCccccHHHHHHHHHHhHHh
Q psy3760 243 IASIAFDSNRDKNLRSI-SASH------LFGTTISRVIIKQGTYLRSYVYSFIKLLSPKL 295 (306)
Q Consensus 243 ~p~~~~~~~~~~~l~~~-~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 295 (306)
..+.... ....+++.+ .+.. ..+.....++.+++- ....+++|++.+.+..
T Consensus 144 ~~ep~~~-~~~~g~~~~~d~~~~w~~~~g~~~~~~~~~~~~~~-~p~~v~~~~~a~~~a~ 201 (272)
T 2czl_A 144 IHESRFT-YPRYGLVQVVDLGAWWEERTGLPLPLGAILARRDL-GEGLIRALDEAVRRSV 201 (272)
T ss_dssp CTTHHHH-GGGGTCEEEEEHHHHHHHHHSSCEEEEEEEEEGGG-CHHHHHHHHHHHHHHH
T ss_pred ecchhhh-hhhcCCccHHHHHHHHHHhcCCCCCcchhhccccc-CHHHHHHHHHHHHHHH
Confidence 2143322 212233322 2211 011112233445544 4667888888776543
No 254
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=95.32 E-value=0.86 Score=36.44 Aligned_cols=206 Identities=11% Similarity=0.043 Sum_probs=111.1
Q ss_pred CCcEEEEec--ccchhhhhHHHHHHHHHhCCCcEEEEEeC--Chh-HHHHHHHcCCee---EEEEccc-c-----CC---
Q psy3760 92 TGNLTIATT--HTQARYALPKIIKEFTIQFPKVKLSLLQG--NPK-QITEMIRNDQAD---IAIVTEI-L-----SP--- 154 (306)
Q Consensus 92 ~~~l~I~~~--~~~~~~~l~~~l~~~~~~~p~~~i~~~~~--~~~-~~~~~l~~~~~D---i~i~~~~-~-----~~--- 154 (306)
.+.|+|-++ ++=....+.+.+.+...+.-+..+.+... ... ...+.+.++..| +++.... . ..
T Consensus 7 ~~pi~~ivp~~~GG~~D~~aR~la~~l~~~lg~~vvV~n~~Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~ 86 (301)
T 2qpq_A 7 NKPLDIIVTFPPGGGTDMLARLIGNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLP 86 (301)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHHHHHHHGGGSCEEEEECCTGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTTCS
T ss_pred CCCEEEEEccCCCcHHHHHHHHHHHHHHHHhCCCEEEEECCChhHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHhccCCC
Confidence 345776554 33345566667766655544555555543 222 223678877777 7775311 0 01
Q ss_pred ---CCCcee-eccccceEEEEecCCCCCCCCCCcChhhhcC----CC--eEeecC--CCCcHHHHHHHHHhCCCceeEEE
Q psy3760 155 ---SDKLIS-IPCYQWEYVIIVPLDHPLLLLNSISLKEISN----YP--LITYDL--SFSGRIKLDREFSLQKLTPYIVL 222 (306)
Q Consensus 155 ---~~~~~~-~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~----~~--~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 222 (306)
..++.. -.+...+.+++++++.|. -+++||.. .| +-.-.. +...+-....+.+..|+....+
T Consensus 87 yd~~~d~~pv~~~~~~~~~lvv~~~s~~-----~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~~~~V- 160 (301)
T 2qpq_A 87 FDPKKDFAAVINVAYVPSVFVVPAGSKY-----KTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHMVHV- 160 (301)
T ss_dssp SCTTTTEEEEEEEEEEEEEEEEETTCSC-----CSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCCEEE-
T ss_pred CCchhcchhhhehhcCCeEEEEeCCCCC-----CCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCCeEEe-
Confidence 123332 235678889999998763 36788853 22 222222 2222223334455678876544
Q ss_pred EecCHHHHHHHHHhc-cceeeeecceeccc-ccCCceeeecCCC--------------------CccceEEEEEeCCccc
Q psy3760 223 ETINSDIIKTYVELR-MGIGIIASIAFDSN-RDKNLRSISASHL--------------------FGTTISRVIIKQGTYL 280 (306)
Q Consensus 223 ~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~-~~~~l~~~~~~~~--------------------~~~~~~~l~~~~~~~~ 280 (306)
.......+...+..| .-+++.....+..+ +.+.++.+.+... ....-+.++.+++.+
T Consensus 161 py~g~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p- 239 (301)
T 2qpq_A 161 PYKGCGPALNDVLGSQIGLAVVTASSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATP- 239 (301)
T ss_dssp ECSSHHHHHHHHHTTSSSCEEEEHHHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCC-
T ss_pred ccCChHHHHHHHHCCCccEEEEcHHHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCC-
Confidence 345556677777777 33334433333333 6677777654310 001123456677754
Q ss_pred cHHHHHHHHHHhHHhhHHHHHhhh
Q psy3760 281 RSYVYSFIKLLSPKLNRKFINKIL 304 (306)
Q Consensus 281 ~~~~~~~~~~l~~~~~~~~~~~~~ 304 (306)
...+.++-+.+.+.++....++.+
T Consensus 240 ~~vv~~l~~al~~~~~~~~~~~~~ 263 (301)
T 2qpq_A 240 MAVRQKLYDGIAKVMQRDDVQKKL 263 (301)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHH
Confidence 667888888888877666555443
No 255
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=95.31 E-value=0.12 Score=34.71 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=45.1
Q ss_pred CHHHHHHHh------CCCchHHHHHHHHHHHHcCceeEEe---c---CCCccccCHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3760 18 NLTEAAKAL------YTSQPGVSKAIIELEEELSIDIFIR---H---GKRIRGLTKPGQAILRSIEIIMQEIEGLKKIG 84 (306)
Q Consensus 18 s~~~aA~~l------~isq~~~s~~i~~LE~~lg~~Lf~R---~---~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~ 84 (306)
+...-++.+ .+|+++|...|++||+. |.-=-.. . ++.+.++|+.|+..+....+....+.+..+.+
T Consensus 24 ~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~-GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~i 101 (115)
T 4esb_A 24 YGYELSTKLNKHGFTFVSEGSIYPLLLRMQKE-KLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQSWGMVSTTVNNL 101 (115)
T ss_dssp EHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHT-TSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcChHHHHHHHHHHC-CCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 49999999999999997 3221111 1 12223899999999988877766666655433
No 256
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=95.30 E-value=0.036 Score=38.84 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=34.4
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
||-.+.+++..+.+.+ .|++.-|+.+|+|++++++++++||+.
T Consensus 2 ld~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CCSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4555666776665432 389999999999999999999999975
No 257
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=95.25 E-value=0.03 Score=34.72 Aligned_cols=42 Identities=12% Similarity=-0.003 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
++.++|....+.. |....|+.+|+|.++|.++++++-+.|+.
T Consensus 20 ~e~~vl~l~~~g~-s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 20 RERQVLSAVVAGL-PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHHHHHHHHTTTC-CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4556666665555 99999999999999999999999999986
No 258
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=95.19 E-value=0.93 Score=36.15 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=110.7
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHc----CCeeEEEEccccC----CCCC----c-
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRN----DQADIAIVTEILS----PSDK----L- 158 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~----~~~Di~i~~~~~~----~~~~----~- 158 (306)
.++|+|..... ...+..++..|.++ |+++|++...++.++.+.+.. +..|+.+...... ...+ +
T Consensus 4 ~~~L~v~~~~~--~~~~~~~~~~F~~~-~gi~V~~~~~~~~~~~~kl~~~~~~~~pDv~~~~~~~~~~~~~~~g~l~~l~ 80 (312)
T 1xvx_A 4 DSGIVVYNAQH--ENLVKSWVDGFTKD-TGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLD 80 (312)
T ss_dssp CSCEEEEECSC--HHHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESSSHHHHHHHHTTCBCCCC
T ss_pred CceEEEEecCc--HHHHHHHHHHHHHh-hCCEEEEEECChHHHHHHHHHhhCCCCCCEEEecchHHHHHHHhCCCcccCC
Confidence 56789877543 56788999999999 999999998888888877752 5689998742100 0001 1
Q ss_pred ----------------eeeccccceEEEEecCCCCCCCCCCcChhhhcCCC---eEeecCCCCcHHHHHH-HHHhCC---
Q psy3760 159 ----------------ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYP---LITYDLSFSGRIKLDR-EFSLQK--- 215 (306)
Q Consensus 159 ----------------~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~---~i~~~~~~~~~~~~~~-~~~~~~--- 215 (306)
...++.....+++.+++..-....+-+|+||.+.. -+...+.......+.. .....|
T Consensus 81 ~~~~~~~~~~~~~~~gy~~P~~~~~~~l~ynk~~~~~~~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~ 160 (312)
T 1xvx_A 81 AVTQAQVAQEYRPEHGRWTGIAARSTVFVYNPEKISEAELPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKGEKA 160 (312)
T ss_dssp HHHHHHBCGGGSCSSSSCEEEEEEEEEEEECTTTSCGGGSCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHHCHHH
T ss_pred hHHHhhCCHHHCCCCCeEEEEeccceEEEEEhhhccccCCCCCHHHHhCHHhcCCEeeCCCCccHHHHHHHHHHHhCcHH
Confidence 13455566788888888632223456899987532 1222222111111111 111111
Q ss_pred -------CceeEEEEecCHHHHHHHHHhcc-ceeeeecceeccc------ccCCcee-eecCC--CCccceEEEEEeCCc
Q psy3760 216 -------LTPYIVLETINSDIIKTYVELRM-GIGIIASIAFDSN------RDKNLRS-ISASH--LFGTTISRVIIKQGT 278 (306)
Q Consensus 216 -------~~~~~~~~~~~~~~~~~~v~~g~-gi~~~p~~~~~~~------~~~~l~~-~~~~~--~~~~~~~~l~~~~~~ 278 (306)
+..+. ....+.....+++.+|. ++++.....+... ....+.. +|.+. ........+...++.
T Consensus 161 a~~~~~~l~~~~-~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s 239 (312)
T 1xvx_A 161 TLEWLKAMKTNF-TAYKGNSTVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASS 239 (312)
T ss_dssp HHHHHHHHHHHE-EECSSHHHHHHHHHTTSSSEEEEETHHHHHHHTTTCTTTTTCEEECCCTTCGGGCEEEEEEEEBTTC
T ss_pred HHHHHHHHHHhC-cccCCchHHHHHHHcCceEEEEecchhHHHHHhhcccCCCceEEEccCCCCCcceeeeeeEEEecCC
Confidence 11222 23346667788888884 4445443322210 1123333 23221 111223345556666
Q ss_pred cccHHHHHHHHHHhHH
Q psy3760 279 YLRSYVYSFIKLLSPK 294 (306)
Q Consensus 279 ~~~~~~~~~~~~l~~~ 294 (306)
....++++|++++.+.
T Consensus 240 ~~~~~A~~fi~fl~s~ 255 (312)
T 1xvx_A 240 KHPKEAQEFVKWITGK 255 (312)
T ss_dssp SSHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHhCH
Confidence 6778899999999653
No 259
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=95.14 E-value=0.27 Score=33.09 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCHHHHHHHh------CCCchHHHHHHHHHHHHcCceeEE-----ecCCCccccCHhHHHHHHHHHHHHHH
Q psy3760 8 FVREAVRQNFNLTEAAKAL------YTSQPGVSKAIIELEEELSIDIFI-----RHGKRIRGLTKPGQAILRSIEIIMQE 76 (306)
Q Consensus 8 ~f~~v~~~~~s~~~aA~~l------~isq~~~s~~i~~LE~~lg~~Lf~-----R~~~~~~~lT~~G~~l~~~a~~il~~ 76 (306)
++..+.+...+...-++.+ ++|+++|+..|++||+.==+.--. +.++...++|+.|+..+.....-...
T Consensus 16 IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~~ 95 (117)
T 4esf_A 16 VLEIISRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKWDF 95 (117)
T ss_dssp HHHHHHHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHHHH
Confidence 3334444222566777777 799999999999999972111111 11223348999999999888777666
Q ss_pred HHHHHHHHH
Q psy3760 77 IEGLKKIGK 85 (306)
Q Consensus 77 ~~~~~~~~~ 85 (306)
+.+..+.+-
T Consensus 96 ~~~~i~~il 104 (117)
T 4esf_A 96 VSSKINVLK 104 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555443
No 260
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=95.13 E-value=0.041 Score=33.07 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCcee
Q psy3760 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDI 48 (306)
Q Consensus 3 ~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~L 48 (306)
-++-.+|....-.|.|....|+.+|+|.+++.+++++..+.|...|
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 3455566665445569999999999999999999999888886554
No 261
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=95.09 E-value=0.11 Score=36.77 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 11 ~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
.+++.|.|..++|+.+|+|.+||++.+++.++. |.
T Consensus 43 ~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~-G~ 77 (149)
T 1k78_A 43 ELAHQGVRPCDISRQLRVSHGCVSKILGRYYET-GS 77 (149)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHH-SC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHc-CC
Confidence 334456699999999999999999999999877 54
No 262
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=95.09 E-value=0.032 Score=36.94 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHH--hcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-----CCCc--cccCHhHHHHHHHHHHH
Q psy3760 3 LHQFRFVREAVR--QNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-----GKRI--RGLTKPGQAILRSIEII 73 (306)
Q Consensus 3 ~~~l~~f~~v~~--~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-----~~~~--~~lT~~G~~l~~~a~~i 73 (306)
..++..+..+.+ .+.|.+.-|+.+++|++|+++.|+.||+. |.---.+. |+.. +.+|+ .+.+.+.+.
T Consensus 21 ~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~-g~v~~~~~~~~~~gr~~~~~~l~~---~~~~~~~~~ 96 (109)
T 2d1h_A 21 DTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIEL-GLVVRTKTEGKKIGRPKYYYSISS---NILEKIRND 96 (109)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEC-------CCEEEEECT---THHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEeeccccCCCCCCCeeeecCH---HHHHHHHHH
Confidence 345555655554 22378999999999999999999999764 43333322 1211 25666 445555555
Q ss_pred HHHHHH
Q psy3760 74 MQEIEG 79 (306)
Q Consensus 74 l~~~~~ 79 (306)
++.+.+
T Consensus 97 ~~~~~~ 102 (109)
T 2d1h_A 97 LLNCAK 102 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 263
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=95.05 E-value=0.042 Score=39.59 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
|-.+.+++..+.+.+ .|++.-|+.+|+|++|++++|++||+. |.
T Consensus 9 d~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~-G~ 53 (162)
T 2p5v_A 9 DKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDA-GI 53 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT-TS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CC
Confidence 445666666666542 289999999999999999999999876 44
No 264
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=94.97 E-value=0.13 Score=36.08 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=32.3
Q ss_pred hhhHHHHHHHH--HhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 3 LHQFRFVREAV--RQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 3 ~~~l~~f~~v~--~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
..+.+++..+. +.+.|.+.-|+.+++|+||+|+.++.||+. |.
T Consensus 26 ~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~-G~ 70 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEEL-GF 70 (152)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TS
T ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CC
Confidence 34455555553 222379999999999999999999999984 44
No 265
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=94.97 E-value=0.034 Score=40.07 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=34.7
Q ss_pred CchhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 1 MNLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 1 m~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
||-.+.+++..+.+.+ .|++.-|+.+|+|++|++++|++||+.
T Consensus 1 lD~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 1 MDRLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEED 44 (162)
T ss_dssp CCHHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4555667776666542 389999999999999999999999985
No 266
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=94.94 E-value=0.022 Score=42.31 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeE
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIF 49 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf 49 (306)
.+.+++..+.+.+.|++.-|+.+|+|++|++++|++||+. |.---
T Consensus 21 ~~~~IL~~L~~~~~s~~eLA~~lglS~stv~~~l~~Le~~-GlI~~ 65 (192)
T 1uly_A 21 TRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEA-GLVEV 65 (192)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEE
Confidence 4455555555434488999999999999999999999875 55433
No 267
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.88 E-value=0.037 Score=34.54 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=26.2
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
|.+.-|+.+++|++++++.|+.||+. |.-
T Consensus 16 s~~eLa~~lgvs~~tv~r~L~~L~~~-GlI 44 (81)
T 2htj_A 16 KTAEIAEALAVTDYQARYYLLLLEKA-GMV 44 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHH-TSE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CCE
Confidence 78899999999999999999999986 553
No 268
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=94.83 E-value=0.059 Score=38.25 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
|-.+.+++..+.+.+ .|++.-|+.+|+|++++++++++||+.
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344556666666532 288999999999999999999999976
No 269
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=94.77 E-value=0.42 Score=37.86 Aligned_cols=160 Identities=10% Similarity=0.095 Sum_probs=98.4
Q ss_pred EEEEeCChhHHHHHHHcCCeeEEEEccccC-----CCCCceeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeec
Q psy3760 124 LSLLQGNPKQITEMIRNDQADIAIVTEILS-----PSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYD 198 (306)
Q Consensus 124 i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~-----~~~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~ 198 (306)
+++.-....++..-+..|.+|+||+..+.. +-..+.-..++.-++++.+|++ +. -+++++.+.+..+
T Consensus 63 i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~~v~elldLgfG~crl~vAvp~~-~~-----~~~~~l~~~RIAT-- 134 (304)
T 1nh8_A 63 VEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAG-RN-----WTTADLAGMRIAT-- 134 (304)
T ss_dssp EEEEEECGGGHHHHHHHSSCSEEEEEHHHHHHHTCCEEEEEECSCCCEEEEEEEETT-SC-----CCGGGGTTCEEEE--
T ss_pred EEEEEEChhhHHHHHhCCCccEEEeeeeeeeecCCCceEEecCCcccEEEEEEEECC-Cc-----CChHHhCCCEEEe--
Confidence 455555677999999999999999852211 1122334445677899999887 32 2577776644443
Q ss_pred CCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee-cccccCCceeeecCCCCccceEEEEEeCC
Q psy3760 199 LSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF-DSNRDKNLRSISASHLFGTTISRVIIKQG 277 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 277 (306)
.+.+...++|.+.|+...++....+.+.. ...|.+=+++.--.. ..++..+|+.+ .+.....+..|+.++.
T Consensus 135 ---kYp~l~r~yf~~~gi~~~Ii~l~GsvE~a---P~~GlADaIvDiVsTG~TLraNgL~~i--~e~I~~SsA~LI~n~~ 206 (304)
T 1nh8_A 135 ---AYPNLVRKDLATKGIEATVIRLDGAVEIS---VQLGVADAIADVVGSGRTLSQHDLVAF--GEPLCDSEAVLIERAG 206 (304)
T ss_dssp ---SCHHHHHHHHHHHTCCCEEEECSSCCTHH---HHTTSCSEEEEEESSSHHHHHTTEEEE--EEEEEEECEEEEEEC-
T ss_pred ---CcHHHHHHHHHHCCCeEEEEECCCceeec---cCCCcccEEEEEeCChHHHHHCcCEEc--ccEEEEEEEEEEEccc
Confidence 34467788999999987766666666654 344544444433211 12245678877 3334455778888776
Q ss_pred ccc---cHHHHHHHHHHhHHhhHHH
Q psy3760 278 TYL---RSYVYSFIKLLSPKLNRKF 299 (306)
Q Consensus 278 ~~~---~~~~~~~~~~l~~~~~~~~ 299 (306)
... ...++.+++.++..+.++.
T Consensus 207 s~~~~k~~~i~~l~~rl~~vl~A~~ 231 (304)
T 1nh8_A 207 TDGQDQTEARDQLVARVQGVVFGQQ 231 (304)
T ss_dssp -------CHHHHHHHHHHHHHHHTT
T ss_pred cchhhhHHHHHHHHHHHHHHHHhcc
Confidence 433 3567788888877765543
No 270
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.72 E-value=0.062 Score=43.52 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=46.4
Q ss_pred HHHHHHHHh--cCC---HHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHH
Q psy3760 7 RFVREAVRQ--NFN---LTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAIL 67 (306)
Q Consensus 7 ~~f~~v~~~--~~s---~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~ 67 (306)
.++..+.+. | + .++||+.||++.+++.+.+++.-..-| |+.+.++|. .+|+.|..++
T Consensus 251 ~~i~~~~~~~~g-~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~--li~~~~~g~-~~~~~~~~~~ 312 (324)
T 1hqc_A 251 EILEVLILRFGG-GPVGLATLATALSEDPGTLEEVHEPYLIRQG--LLKRTPRGR-VPTELAYRHL 312 (324)
T ss_dssp HHHHHHHHHSCS-SCCCHHHHHHHTTSCHHHHHHHTHHHHHHTT--SEEEETTEE-EECHHHHHHT
T ss_pred HHHHHHHHHhcC-CCchHHHHHHHhCCCHHHHHHHHhHHHHHhc--chhcCCccc-eecHHHHHHH
Confidence 566666654 6 7 999999999999999999998555544 667888888 6999999876
No 271
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=94.68 E-value=0.068 Score=43.30 Aligned_cols=43 Identities=23% Similarity=0.074 Sum_probs=37.6
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHh
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~ 62 (306)
|-..-|+.|++|+++|+|+|+.|++ .|..+....++|. +|.+.
T Consensus 21 Sg~eLa~~lgvSr~aV~k~i~~L~~-~G~~i~~~~~~GY-~L~~~ 63 (323)
T 3rkx_A 21 SGQSIAESLNISRTAVKKVIDQLKL-EGCKIDSVNHKGH-LLQQL 63 (323)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHH-TTCEEEEETTTEE-EEEEC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHh-cCCeEEEeCCCeE-EEecC
Confidence 8889999999999999999999986 8998888788887 56543
No 272
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=94.67 E-value=0.048 Score=34.89 Aligned_cols=47 Identities=6% Similarity=-0.009 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHhc---CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEe
Q psy3760 2 NLHQFRFVREAVRQN---FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIR 51 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~---~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R 51 (306)
+-.++.++..+.+.| -+...-|++++++++++++.|++||+. .|+.|
T Consensus 19 t~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~k---glIkr 68 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESK---KLIKA 68 (91)
T ss_dssp CSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHT---TSEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEE
Confidence 456778888888633 467789999999999999999999983 55653
No 273
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=94.66 E-value=0.027 Score=35.00 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=27.2
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHHHHHHHHc
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAIIELEEEL 44 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i~~LE~~l 44 (306)
+.|.|...-|++||+|.+++.++|.+||++=
T Consensus 28 ~~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 28 IEGATAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp SSTEEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4445899999999999999999999999863
No 274
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.64 E-value=0.059 Score=35.88 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhc--CCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 5 QFRFVREAVRQN--FNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 5 ~l~~f~~v~~~~--~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
.++++..+.+.| .|...-|+.+|+|+++++++|+.|+++ |.
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~-Gl 62 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ-GF 62 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH-TS
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CC
Confidence 455555554332 389999999999999999999999976 54
No 275
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=94.54 E-value=0.22 Score=38.51 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhc--CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC--CCccccCHhHHHHH
Q psy3760 4 HQFRFVREAVRQN--FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG--KRIRGLTKPGQAIL 67 (306)
Q Consensus 4 ~~l~~f~~v~~~~--~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~--~~~~~lT~~G~~l~ 67 (306)
+-+.++..+.+.+ .|++.-|+.+++++||+++.++.||+. |. +.|.+ ++. +|++....+-
T Consensus 7 r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~-G~--v~~~~~~~~Y-~lg~~~~~lg 70 (241)
T 2xrn_A 7 RAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEE-FL--VEALGPAGGF-RLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTT-TS--EEECGGGCEE-EECSHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CC--EEEeCCCCeE-EECHHHHHHH
Confidence 3456666666542 379999999999999999999999974 43 44443 566 7988765544
No 276
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=94.52 E-value=0.076 Score=39.27 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHhc--CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHh
Q psy3760 4 HQFRFVREAVRQN--FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62 (306)
Q Consensus 4 ~~l~~f~~v~~~~--~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~ 62 (306)
+..+++..+.+.+ .|...-|+.+++|.+|+.+.|+.||+ .|.++-. .++|. .+++.
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~-~G~~I~~-~~~Gy-~l~~~ 79 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS-LGYNIVA-TPRGY-VLAGG 79 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH-HTCCCEE-ETTEE-ECCTT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEE-ECCEE-EECCc
Confidence 3455555555432 38999999999999999999999998 6887644 55676 56643
No 277
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=94.44 E-value=0.058 Score=35.40 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=34.9
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-CCCccccCHhHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-GKRIRGLTKPGQAIL 67 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-~~~~~~lT~~G~~l~ 67 (306)
|...-|+.+++|+++|.++|+.||++ |.--..+. ++|. .+++.+..-+
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~~-GlI~~~~gG~~G~-~V~~~~~~~~ 93 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLESA-GVIESRSLGMKGT-YIKVLNNKFL 93 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECSSSCE-EEEECCHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEeCCCCcE-EEecCCHHHH
Confidence 67889999999999999999999987 54322332 3676 4666554433
No 278
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=94.42 E-value=0.69 Score=36.88 Aligned_cols=186 Identities=14% Similarity=0.077 Sum_probs=95.9
Q ss_pred hhhhhHHHHHHHHHhC---CCcEEEEEe--CChhHHHHHHHcC-CeeEEEEccccC----CCCCce-----------eec
Q psy3760 104 ARYALPKIIKEFTIQF---PKVKLSLLQ--GNPKQITEMIRND-QADIAIVTEILS----PSDKLI-----------SIP 162 (306)
Q Consensus 104 ~~~~l~~~l~~~~~~~---p~~~i~~~~--~~~~~~~~~l~~~-~~Di~i~~~~~~----~~~~~~-----------~~~ 162 (306)
....+..++..|.+.| |++.+++.. .++.++...+..| ..|+++...... ...++. ..+
T Consensus 13 ~~~~~~~~~~~F~~~~~~~~gi~V~v~~~~~~s~~l~~~~~~g~~~Dv~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~p 92 (310)
T 1sbp_A 13 TRELYEQYNKAFSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDVNAIAERGRIDKNWIKRLPDDSAP 92 (310)
T ss_dssp THHHHHHHHHHHHHHHHHHHSCEEEEEEEESCHHHHHHHHHTTCCCSEEEESSHHHHHHHHHTTSSCTTGGGGSHHHHCS
T ss_pred CHHHHHHHHHHHHHHhhhCCCceEEEEeecCChHHHHHHHhcCCCCCEEEeCcHHHHHHHHhCCCcCcchhhcCCccCCc
Confidence 3557788999998765 898887754 7777888888877 799998642100 011110 011
Q ss_pred cccceEEEEecCCCCCCCCCCcChhhhcC--CCeEeecCCCC-cH--HHHHHHH---HhCCC------------ceeEEE
Q psy3760 163 CYQWEYVIIVPLDHPLLLLNSISLKEISN--YPLITYDLSFS-GR--IKLDREF---SLQKL------------TPYIVL 222 (306)
Q Consensus 163 l~~~~~~~v~~~~~~l~~~~~i~~~dl~~--~~~i~~~~~~~-~~--~~~~~~~---~~~~~------------~~~~~~ 222 (306)
. ...++++.+++.+ ..+-+|+||.+ ..+....+... .. ..+..+. ...|. .++...
T Consensus 93 ~-~~~~~l~yn~~~~---~~p~tw~dL~~~~~ki~~~~p~~~~~~~~~~~~~~~~~~~~~gg~~~~a~~~l~~l~~~~~~ 168 (310)
T 1sbp_A 93 Y-TSTIVFLVRKGNP---KQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAEDFVKALFKNVEV 168 (310)
T ss_dssp E-EBCEEEEEETTCT---TCCCSGGGGGSTTCCEECCCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTEEE
T ss_pred e-eEEEEEEEeCCCC---CCCCCHHHHcCccceEecCCCcccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 1 2347888888874 23568999975 34444333211 11 1111111 12221 123332
Q ss_pred EecCHH-HHHHHHHhc-cceeeeecceeccc--c-c-CCceeeecCCCCccceEEEEEeCCc----cccHHHHHHHHHHh
Q psy3760 223 ETINSD-IIKTYVELR-MGIGIIASIAFDSN--R-D-KNLRSISASHLFGTTISRVIIKQGT----YLRSYVYSFIKLLS 292 (306)
Q Consensus 223 ~~~~~~-~~~~~v~~g-~gi~~~p~~~~~~~--~-~-~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~ 292 (306)
...+.. ....++.+| ..+++......... . . ..+..+ ++.........+...++. ....++++|++++.
T Consensus 169 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~v-~P~~g~~~~~~~~i~~~~~~~s~~~~~A~~fi~fl~ 247 (310)
T 1sbp_A 169 LDSGARGSTNTFVERGIGDVLIAWENEALLATNELGKDKFEIV-TPSESILAEPTVSVVDKVVEKKDTKAVAEAYLKYLY 247 (310)
T ss_dssp CCSSHHHHHHHHHTSCCCSEEEEEHHHHHHHHHTTTTTTEEEE-CCSEEECBCCEEEECHHHHHHHTCHHHHHHHHHGGG
T ss_pred cCCccHHHHHHHHhCCCccEEEeechHHHHHHHhcCCCceEEE-ccCCceeccCCeEEeccccccccCHHHHHHHHHHHc
Confidence 233443 367778777 44444433222111 1 1 345444 332111111233333332 45678999999986
Q ss_pred HH
Q psy3760 293 PK 294 (306)
Q Consensus 293 ~~ 294 (306)
+.
T Consensus 248 s~ 249 (310)
T 1sbp_A 248 SP 249 (310)
T ss_dssp SH
T ss_pred Ch
Confidence 54
No 279
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=94.39 E-value=0.78 Score=37.34 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=78.6
Q ss_pred CCcEEEEecccchhhhhH----HHHHHHHHhCCCcEEEEEe-CChhHHHHHHHcCCeeEEEEccccC---CCCCceeec-
Q psy3760 92 TGNLTIATTHTQARYALP----KIIKEFTIQFPKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEILS---PSDKLISIP- 162 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~----~~l~~~~~~~p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~~---~~~~~~~~~- 162 (306)
...|++...-.......| .-..-|.+. ++++++.. .+.....+.|.+|++|+++...... ...+.....
T Consensus 6 ~~kvt~~LdW~p~~~~ap~~vA~~kG~f~e~--GLdVei~~~~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v 83 (342)
T 4esw_A 6 TNKITFLLNWEAAPYHIPVYLANIKGYFKDE--NLDIAILEPSNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSI 83 (342)
T ss_dssp CCEEEEECSSSSCGGGHHHHHHHHTTHHHHT--TCEEEEEEESSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCEeCcChHHHHHHHHCCchHHc--CCeEEEEeCCChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEE
Confidence 456888865433333333 333334444 77787766 4556789999999999999752111 112222211
Q ss_pred ---cccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhc
Q psy3760 163 ---CYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELR 237 (306)
Q Consensus 163 ---l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 237 (306)
.......+++.++.+. .-+++||.+...... +......+..+++..|+.+..+..++.......++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~----~~~~~dLkGK~ig~~--~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G 155 (342)
T 4esw_A 84 GSLLDEPFTGICYLEGSGI----TSDFQSLKGKRIGYV--GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEG 155 (342)
T ss_dssp EEEECSCCEEEEEETTSSC----CSSGGGGTTCEEEES--SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHT
T ss_pred EEeccCCcccccccccccc----cCCHHHhCCCEEEec--CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcC
Confidence 1223344555554431 125899998877653 23345577888999999875443333333445666677
No 280
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=94.32 E-value=0.86 Score=34.21 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=94.9
Q ss_pred EEEEeCChhHHHHHHHcCCeeEEEEcccc-----CCCCCceeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeec
Q psy3760 124 LSLLQGNPKQITEMIRNDQADIAIVTEIL-----SPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYD 198 (306)
Q Consensus 124 i~~~~~~~~~~~~~l~~~~~Di~i~~~~~-----~~~~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~ 198 (306)
+++.-....++..-+..|.+|++|+..+. .+-..+.-..++.-++++.+|++.+. +++ +....
T Consensus 40 i~~~~~R~~DIp~yV~~G~aDlGItG~D~l~E~~~~v~elldLgfG~crl~vAvp~~~~~--------~~~-~~RIA--- 107 (219)
T 1o63_A 40 IVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFFIPTNISRMVLAGPKGRGI--------PEG-EKRIA--- 107 (219)
T ss_dssp EEEEEECGGGHHHHHHTTSCSEEEEEHHHHHHSCCCCBCCSEEEEEEEEEEEEEETTTCC--------CSS-CEEEE---
T ss_pred eEEEEECchhHHHHHhCCCccEEEeeeEeeeecCCCeeEEeccccccEEEEEEEECCCcc--------ccC-CcEEE---
Confidence 34444557789999999999999985221 12223344556678899999988653 333 22222
Q ss_pred CCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee-cccccCCceeeecCCCCccceEEEEEeCC
Q psy3760 199 LSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF-DSNRDKNLRSISASHLFGTTISRVIIKQG 277 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 277 (306)
..+.+...++|++.|+...++....+.+.+ ..-|.+=+++.--.. ..++..+|+.+. .....+..|+.++.
T Consensus 108 --Tkyp~l~r~yf~~~Gi~~~Ii~l~GsvE~a---P~~GlADaIvDivsTG~TLraNgL~~ie---~I~~SsA~LI~n~~ 179 (219)
T 1o63_A 108 --TKFPNVTQRYCESKGWHCRIIPLKGSVELA---PIAGLSDLIVDITETGRTLKENNLEILD---EIFVIRTHVVVNPV 179 (219)
T ss_dssp --ESCHHHHHHHHHHHTCCEEEEECSSCTTHH---HHHTSCSEEEEEESSSHHHHHTTEEEEE---EEEEEEEEEEECHH
T ss_pred --ECcHHHHHHHHHHCCCceEEEECCCceeec---cCCCCcceeEEeeccHHHHHHCCCEEee---EEeeeEEEEEECch
Confidence 234567788999999987666556666554 334544444433211 122456787773 34455778887765
Q ss_pred cc--ccHHHHHHHHHHhHHhhHH
Q psy3760 278 TY--LRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 278 ~~--~~~~~~~~~~~l~~~~~~~ 298 (306)
.. ....++.+++.|+..+.++
T Consensus 180 s~~~k~~~i~~l~~rl~~vl~~~ 202 (219)
T 1o63_A 180 SYRTKREEVVSFLEKLQEVIEHD 202 (219)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 32 2356777888887776443
No 281
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=94.29 E-value=0.072 Score=32.85 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=24.6
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
|...-|+.|++|.++|.++|.+||++
T Consensus 33 t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 33 TAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp EHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 78999999999999999999999975
No 282
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=94.28 E-value=0.067 Score=30.97 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=26.7
Q ss_pred HHHHHhcCC----HHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 10 REAVRQNFN----LTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 10 ~~v~~~~~s----~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
..+.+.|.| +..+|+.+||+.++|.+.+++.++.
T Consensus 15 ~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~ 52 (59)
T 2glo_A 15 LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNL 52 (59)
T ss_dssp HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHH
T ss_pred HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 444444447 9999999999999999999876653
No 283
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=94.27 E-value=0.5 Score=31.70 Aligned_cols=77 Identities=17% Similarity=0.038 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHh------CCCchHHHHHHHHHHHHcCceeEEe-----cCCCccccCHhHHHHHHHHHHHHHHH
Q psy3760 9 VREAVRQNFNLTEAAKAL------YTSQPGVSKAIIELEEELSIDIFIR-----HGKRIRGLTKPGQAILRSIEIIMQEI 77 (306)
Q Consensus 9 f~~v~~~~~s~~~aA~~l------~isq~~~s~~i~~LE~~lg~~Lf~R-----~~~~~~~lT~~G~~l~~~a~~il~~~ 77 (306)
+..+.+.-.+...-++.+ .++++++...|++||+.==+.--.. .++...++|+.|+..+.....-...+
T Consensus 19 L~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~~~~~ 98 (116)
T 3hhh_A 19 LAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQRWTLL 98 (116)
T ss_dssp HHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHHHHH
Confidence 334444322556777777 7999999999999998621111110 11223389999999998887777776
Q ss_pred HHHHHHHH
Q psy3760 78 EGLKKIGK 85 (306)
Q Consensus 78 ~~~~~~~~ 85 (306)
.+..+.+-
T Consensus 99 ~~~i~~il 106 (116)
T 3hhh_A 99 SKQVNKMK 106 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555443
No 284
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=94.17 E-value=0.12 Score=32.23 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=25.1
Q ss_pred CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 17 FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 17 ~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
.+...-|++|++|.++|.++|.+||++
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 388999999999999999999999975
No 285
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=94.14 E-value=0.089 Score=31.44 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=35.6
Q ss_pred hhHHHHHHHH-----HhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCcee
Q psy3760 4 HQFRFVREAV-----RQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDI 48 (306)
Q Consensus 4 ~~l~~f~~v~-----~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~L 48 (306)
++-++|.... +.. |+...|+.+|+|.++|.+.+.+.-+.|...+
T Consensus 9 ~er~il~l~~~l~~~~g~-s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDY-TLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp HHHHHHHHHTTTTSSSCC-CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred HHHHHHHHHHccCCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4455666665 444 9999999999999999999999998887654
No 286
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=94.09 E-value=0.15 Score=34.30 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=41.9
Q ss_pred CHHHHHHHhC------CCchHHHHHHHHHHHHcCceeEEe-----cCCCccccCHhHHHHHHHHHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALY------TSQPGVSKAIIELEEELSIDIFIR-----HGKRIRGLTKPGQAILRSIEIIMQEIEGLKK 82 (306)
Q Consensus 18 s~~~aA~~l~------isq~~~s~~i~~LE~~lg~~Lf~R-----~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~ 82 (306)
+...-++.+. +++++++..|++||+.==+.--.. .++...++|++|+..+....+....+.+..+
T Consensus 29 ~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~~~~~~~~i~ 104 (117)
T 3elk_A 29 HGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQALQLARKIID 104 (117)
T ss_dssp EHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556664 999999999999998731221111 1122348999999999886555555444443
No 287
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=94.07 E-value=0.055 Score=31.62 Aligned_cols=23 Identities=30% Similarity=0.134 Sum_probs=20.0
Q ss_pred HHhcCCHHHHHHHhCCCchHHHHH
Q psy3760 13 VRQNFNLTEAAKALYTSQPGVSKA 36 (306)
Q Consensus 13 ~~~~~s~~~aA~~l~isq~~~s~~ 36 (306)
...+ |-.+.|+.+|+||++||+.
T Consensus 8 ~~~~-tq~~lA~~lGvs~~~Vs~w 30 (61)
T 1rzs_A 8 DHFG-TQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp HHHS-SHHHHHHHHTCCHHHHHHC
T ss_pred HHcC-CHHHHHHHhCCCHHHHHHH
Confidence 3446 8899999999999999985
No 288
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=94.02 E-value=0.088 Score=32.53 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=35.3
Q ss_pred CHHHHHHHhCCCch-HHHHHHHHHHHHcCceeEEecCCCccccCHhHHHH
Q psy3760 18 NLTEAAKALYTSQP-GVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAI 66 (306)
Q Consensus 18 s~~~aA~~l~isq~-~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l 66 (306)
+...-|+.|+||.. +|.+++..||++==+.=.. .++.++.||+.|+..
T Consensus 27 ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~-~gRP~w~LT~~g~~~ 75 (79)
T 1xmk_A 27 SALNLAKNIGLTKARDINAVLIDMERQGDVYRQG-TTPPIWHLTDKKRER 75 (79)
T ss_dssp EHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEEC-SSSCEEEECHHHHTT
T ss_pred CHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecC-CCCCCeEeCHhHHhH
Confidence 56778999999999 9999999999962222111 234455899999863
No 289
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=93.93 E-value=0.14 Score=34.29 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCcee
Q psy3760 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDI 48 (306)
Q Consensus 3 ~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~L 48 (306)
-++-++|....-.|.|....|+.+|+|.+||.+++++....|...|
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3455667766455569999999999999999999999988886543
No 290
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=93.92 E-value=0.072 Score=41.66 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=42.0
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHH
Q psy3760 5 QFRFVREAVRQ--NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQA 65 (306)
Q Consensus 5 ~l~~f~~v~~~--~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~ 65 (306)
.++++..+.+. +.|++.-|+.+++++||+++.++.|++ .|. ..|.+++. +|++....
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~-~G~--v~~~~~~Y-~Lg~~~~~ 74 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK-LGY--VAGSGGRW-SLTPRVLS 74 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH-TTS--EEEETTEE-EECGGGHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCC--EEeCCCEE-EEcHHHHH
Confidence 34555555432 238999999999999999999999998 343 45556776 79987644
No 291
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=93.91 E-value=0.29 Score=33.17 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 10 REAVRQNFNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 10 ~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
+.+.+.|.|...+|+.+++|.+||++.+++.++.
T Consensus 27 ~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 27 VEMAADGIRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 3344556699999999999999999999999876
No 292
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=93.90 E-value=0.16 Score=30.13 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 4 HQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 4 ~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
++|..-+..++.| -|+.+||+..||.++|+..+++..-..++.+
T Consensus 17 ~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~~ 61 (70)
T 2cob_A 17 EILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNP 61 (70)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHHHTTTTSSC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHhhcccccCC
Confidence 4555566666666 4999999999999999999999987777643
No 293
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=93.84 E-value=2.1 Score=34.31 Aligned_cols=197 Identities=6% Similarity=-0.058 Sum_probs=112.2
Q ss_pred CCcEEEEecccc-hhhhhHHHHHHHHHhCCCcEEEEEeC--ChhHHHHHHHcCC--eeEEEEccc----------cCC--
Q psy3760 92 TGNLTIATTHTQ-ARYALPKIIKEFTIQFPKVKLSLLQG--NPKQITEMIRNDQ--ADIAIVTEI----------LSP-- 154 (306)
Q Consensus 92 ~~~l~I~~~~~~-~~~~l~~~l~~~~~~~p~~~i~~~~~--~~~~~~~~l~~~~--~Di~i~~~~----------~~~-- 154 (306)
.++|+|....+. ...+...++..|.+++ +++|++... ....+...+..|. .|+.+.... ..+
T Consensus 2 ~~~L~v~~~~g~~~~~~~~~~~~~F~~~~-gi~V~~~~~~~~~~~l~~~~~~g~~~~Dv~~~~~~~~~~~~~~g~l~~l~ 80 (324)
T 4i1d_A 2 NAQITFVSQGGAYQAAQTVAILDPSAKKL-GITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTGYCLRGGEQGLIEKLD 80 (324)
T ss_dssp CCEEEEEECCHHHHHHHHHHTHHHHHHHH-TCEEEEEECSCCHHHHHHHHHTTCCSCCEEEEEHHHHHHHHHTTCBCCCC
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHHHHHHH-CCEEEEecCCCcHHHHHHHHHhCCCCeEEEECCHHHHHHHHHCCCcccCC
Confidence 357888887653 3445677899999998 999998874 3456777776664 899987411 000
Q ss_pred CC-------------CceeeccccceEEEEecCCCCCCCCCCcChhhhcCC-C----eEeecCCCCcH------------
Q psy3760 155 SD-------------KLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNY-P----LITYDLSFSGR------------ 204 (306)
Q Consensus 155 ~~-------------~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~-~----~i~~~~~~~~~------------ 204 (306)
.. .....++.....+++.+++.. ....+-+++||.+. . +..........
T Consensus 81 ~~~~~~~~~~~~~~~~~y~vp~~~~~~~l~yn~~~~-~~~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 159 (324)
T 4i1d_A 81 FSKIPNAAAMPEAYRSPYSVSYEFYSSVLAYSQKTF-PKDAPNSWVDFWDVKKFPGRRALRNHPIATLEAALMADGVAPD 159 (324)
T ss_dssp GGGCHHHHTSCGGGBCSSCEEEEEEEEEEEEETTTC-SSCCCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCGG
T ss_pred hhhCcChhhCCcccccCceeeeecceEEEEEehhhc-CCCCCCCHHHHhChhhcCCceeccCCchhHHHHHHHhcCCChh
Confidence 00 112355666777888888753 22346799999664 1 33333221110
Q ss_pred -------HHHHHHHHhCCCceeEEEEecCHHHHHHHHHhcc-ceeeeecceeccc--ccCCceeeecCCCCccceEEEEE
Q psy3760 205 -------IKLDREFSLQKLTPYIVLETINSDIIKTYVELRM-GIGIIASIAFDSN--RDKNLRSISASHLFGTTISRVII 274 (306)
Q Consensus 205 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~-gi~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~l~~ 274 (306)
....+.+.. +.++......+.....+++.+|. .+++.....+... ....+.... +. .....-++..
T Consensus 160 ~~~~~~~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~~~~~~~~~i 235 (324)
T 4i1d_A 160 KLYPLDVDRAFKKLEE--IKPHITVWWTSGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGAKVSFTY-NQ-GILQSTSLCI 235 (324)
T ss_dssp GCCSCCHHHHHHHHHH--HGGGCSEEECSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTTCSEEEEE-EE-EEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHHH--HhhhhhhhccCcchHHHHHhCCCEEEEecccHHHHHHHhcCCCeEEEe-cC-eeeeccEEEE
Confidence 011112222 12343233446667778888884 4444444333222 223444443 22 2222335556
Q ss_pred eCCccccHHHHHHHHHHhHH
Q psy3760 275 KQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~ 294 (306)
.++.....++++|++++.+.
T Consensus 236 ~k~s~~~~~A~~fi~fl~s~ 255 (324)
T 4i1d_A 236 LKGAPNLETAVKFLNEAVDP 255 (324)
T ss_dssp BTTCTTHHHHHHHHHHHTCH
T ss_pred ECCCCCHHHHHHHHHHHhCH
Confidence 77777788999999998654
No 294
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=93.81 E-value=0.041 Score=40.53 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhC-CCchHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALY-TSQPGVSKAIIELEEE 43 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~-isq~~~s~~i~~LE~~ 43 (306)
.-++++..+.+...+.+.-|+.|+ +|||++|++|+.|++.
T Consensus 24 ~Rl~il~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 24 LRWRITQLLIGRSLTTRELAELLPDVATTTLYRQVGILVKA 64 (182)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 446677777664448889999996 9999999999999874
No 295
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.77 E-value=0.14 Score=32.69 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
++-++|....-.|+|+...|+.||+|.+||.+++.+.-+.|..
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4455666644555699999999999999999888877766643
No 296
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=93.73 E-value=0.1 Score=42.23 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 4 HQFRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 4 ~~l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
++.+++..+.+.+ -|...-|+++++|++|+.|.|+.||+ .|..+..+.++|. ++.+
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~-~G~~i~~~~g~GY-~l~~ 62 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD-WGVDVFTVPGKGY-SLPE 62 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH-TTCCCEEETTTEE-ECSS
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh-CCCcEEEecCCCc-EEee
Confidence 4444555554432 27888999999999999999999997 8998887778887 5654
No 297
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.72 E-value=0.077 Score=39.72 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
.+.++..+.+...+++.-|+.+++|++++|++|+.||+.
T Consensus 17 rl~IL~~L~~~~~s~~eLa~~l~is~stvs~hLk~Le~~ 55 (202)
T 2p4w_A 17 RRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEA 55 (202)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 455555555444488999999999999999999999974
No 298
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=93.71 E-value=0.18 Score=31.83 Aligned_cols=30 Identities=3% Similarity=-0.046 Sum_probs=25.7
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
+.|.|+..+|+.+|||.++|.+.+++.+..
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 444499999999999999999999887753
No 299
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=93.60 E-value=0.12 Score=38.43 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=31.1
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEe-cCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIR-HGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R-~~~~~~~lT~ 61 (306)
|++.-|+.+|+|++|++++|++||+. |.--..+ ..+++ ++++
T Consensus 26 s~~eia~~lgl~~~tv~~~l~~Le~~-G~i~~~~~~~r~i-~~~~ 68 (196)
T 3k2z_A 26 SVREIARRFRITPRGALLHLIALEKK-GYIERKNGKPRAL-RISK 68 (196)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT-TSEECC---TTCC-EESS
T ss_pred CHHHHHHHcCCCcHHHHHHHHHHHHC-CCEEecCCCcceE-EecC
Confidence 99999999999999999999999985 3332222 23455 5664
No 300
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=93.52 E-value=0.74 Score=34.50 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=91.8
Q ss_pred EEEEeCChhHHHHHHHcCCeeEEEEccccC-----CCCCceeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeec
Q psy3760 124 LSLLQGNPKQITEMIRNDQADIAIVTEILS-----PSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYD 198 (306)
Q Consensus 124 i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~-----~~~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~ 198 (306)
+++.-....++..-+..|.+|+||+..+.. +-..+.-..++.-++++.+|++. +++++ +....+
T Consensus 49 v~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~--------~~~~~-~~RIAT-- 117 (214)
T 2vd2_A 49 LRFILAKPMDVTTYVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKCHLAVAGLPNT--------DWSGV-APRIAT-- 117 (214)
T ss_dssp EEEEEECTTHHHHHHHHTSSSEEECCTHHHHSCSCSSEEEEECTTSCCEEEEEECTTC--------CCCSS-SCEEEE--
T ss_pred EEEEEECchhHHHHHhCCCccEEEeeeeeeeecCCCeEEeeccccCCEEEEEEEECCC--------ChhhC-CcEEEE--
Confidence 344445566899999999999999852211 11122334456778999998874 13334 222222
Q ss_pred CCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeecce-ecccccCCceeeecCCCCccceEEEEEeCC
Q psy3760 199 LSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIA-FDSNRDKNLRSISASHLFGTTISRVIIKQG 277 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 277 (306)
.+.+...++|.+.|+...++....+.+.. ..-|.+=+++.--. -..++..+|+.+. .....+..|+.++.
T Consensus 118 ---kyp~l~~~yf~~~gi~~~ii~l~GsvE~a---P~~GlADaIvDivsTG~TLraNgL~~ie---~I~~ssA~LI~n~~ 188 (214)
T 2vd2_A 118 ---KYPNVASSYFREQGEQVEIIKLNGSIELA---PLIGLADRIVDIVSTGQTLKENGLVETE---HICDITSRFIVNPV 188 (214)
T ss_dssp ---SCHHHHHHHHHHHCCCCEEEECCSCTTHH---HHTTSCSEEEEEECCSSSSCTTSCEEEE---EEEECCCEEEECHH
T ss_pred ---CcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCCceEEEEEeCCHHHHHHCCCEEeE---EEEeeEEEEEEcch
Confidence 34567788999999987666656666554 34454444544321 1223567788774 23345677887665
Q ss_pred cc--ccHHHHHHHHHHhHHhhH
Q psy3760 278 TY--LRSYVYSFIKLLSPKLNR 297 (306)
Q Consensus 278 ~~--~~~~~~~~~~~l~~~~~~ 297 (306)
.. ....++.+++.++..+.+
T Consensus 189 s~~~k~~~i~~l~~rl~~vl~a 210 (214)
T 2vd2_A 189 SYRMKDDVIDEMASRLSLVVEG 210 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHh
Confidence 32 234566677776665543
No 301
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=93.44 E-value=2.3 Score=33.68 Aligned_cols=161 Identities=11% Similarity=0.143 Sum_probs=99.8
Q ss_pred EEEEEeCChhHHHHHHHcCCeeEEEEccccC-----------CCCC---ceeeccccceEEEEecCCCCCCCCCCcChhh
Q psy3760 123 KLSLLQGNPKQITEMIRNDQADIAIVTEILS-----------PSDK---LISIPCYQWEYVIIVPLDHPLLLLNSISLKE 188 (306)
Q Consensus 123 ~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~-----------~~~~---~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~d 188 (306)
.+++.-....++..-+..|.+|+||+..+.. ...+ +.-..++.-++++.+|++.+. .+.++
T Consensus 47 ~v~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~~~~~~~~~~~v~el~dLgfG~crl~vAvp~~~~~-----~~~~~ 121 (299)
T 1h3d_A 47 PIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAW-----DGPLS 121 (299)
T ss_dssp SEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHHHHHHHHHTCCCCEEEEEECSCCCEEEEEEEETTSCC-----CCGGG
T ss_pred CEEEEEeChhHHHHHHhCCCCcEEEeeeeeeeccccccccccCCCcEEEEeccCcCCEEEEEEEECCCCC-----CChHH
Confidence 3566666778999999999999999852210 0111 223355678899999987642 23566
Q ss_pred hcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee-cccccCCceeeecCCCCcc
Q psy3760 189 ISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF-DSNRDKNLRSISASHLFGT 267 (306)
Q Consensus 189 l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~-~~~~~~~l~~~~~~~~~~~ 267 (306)
+.+.+..+ .+.+...++|.+.|+...++....+.+.. ..-|.+=+++---.. ..++..+|+.+. ....
T Consensus 122 l~g~RIAT-----kyp~l~~~yf~~~gi~~~ii~l~GsvE~a---P~~GlADaIvDivsTG~TLraNgL~~ie---~I~~ 190 (299)
T 1h3d_A 122 LNGKRIAT-----SYPHLLKRYLDQKGISFKSCLLNGSVEVA---PRAGLADAICDLVSTGATLEANGLREVE---VIYR 190 (299)
T ss_dssp GTTCEEEE-----SCHHHHHHHHHHHTCCCEEEECSSCTTHH---HHTTSCSEEEEEESSCHHHHHTTEEEEE---EEEE
T ss_pred hCCCEEEe-----CcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCccceEEecccCHHHHHHCCCEEeE---EEEe
Confidence 65544332 34567788899999987766555666554 445544444433211 123456787762 3445
Q ss_pred ceEEEEEeCCccc---cHHHHHHHHHHhHHhhHHH
Q psy3760 268 TISRVIIKQGTYL---RSYVYSFIKLLSPKLNRKF 299 (306)
Q Consensus 268 ~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 299 (306)
.+..|+.++.... ...++.+++.++..+.++.
T Consensus 191 SsA~LI~n~~s~~~~k~~~i~~l~~rl~~v~~A~~ 225 (299)
T 1h3d_A 191 SKACLIQRDGEMEESKQQLIDKLLTRIQGVIQARE 225 (299)
T ss_dssp ECEEEEEESSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 5778888877532 2457777777777665544
No 302
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=93.17 E-value=0.68 Score=30.03 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=37.0
Q ss_pred HHHHHh--CCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHH
Q psy3760 21 EAAKAL--YTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQE 76 (306)
Q Consensus 21 ~aA~~l--~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~ 76 (306)
.-++.. .++.+++...+++||++==+.-..+.++.+.++|++|+..+....+....
T Consensus 33 ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~~~ 90 (99)
T 2co5_A 33 EILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFFKK 90 (99)
T ss_dssp HHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhHHh
Confidence 334444 69999999999999985211111122344449999999988876654443
No 303
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=93.15 E-value=0.2 Score=39.19 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=39.4
Q ss_pred HHHHHHHHH--hcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCC-CccccCHhHHH
Q psy3760 6 FRFVREAVR--QNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGK-RIRGLTKPGQA 65 (306)
Q Consensus 6 l~~f~~v~~--~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~-~~~~lT~~G~~ 65 (306)
++++..+.+ .+.+++.-|+.+++++||+++.++.|++ .|. ..|..+ +. +|++....
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~-~G~--v~~~~~~~Y-~lg~~~~~ 84 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA-RSV--LTSRADGSY-SLGPEMLR 84 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH-TTS--EEECTTSCE-EECHHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCC--EEECCCCeE-EecHHHHH
Confidence 444444432 2338999999999999999999999998 344 344433 55 78887444
No 304
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=93.01 E-value=0.6 Score=36.78 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=96.0
Q ss_pred EEEEeCChhHHHHHHHcCCeeEEEEcccc-----CCCCCceeeccccceEEEEecCCCCCCCCCCcChhhh-cCCCeEee
Q psy3760 124 LSLLQGNPKQITEMIRNDQADIAIVTEIL-----SPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEI-SNYPLITY 197 (306)
Q Consensus 124 i~~~~~~~~~~~~~l~~~~~Di~i~~~~~-----~~~~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl-~~~~~i~~ 197 (306)
+++.-....++..-+..|.+|+||+..+. .+-..+.-..++.-++++.+|++.+. -+++++ .+.+..+
T Consensus 47 i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~~-----~~~~~l~~~~RIAT- 120 (289)
T 2vd3_A 47 IEVMFSRAADIPEFVADGAADLGITGYDLIVERGSDVEILEDLKYGRASLVLAAPEDSTI-----RGPEDIPRGAVIAT- 120 (289)
T ss_dssp EEEEEECTTTHHHHHHHTSSSEEEEEHHHHHHHTCCCEEEEECSCSCEEEEEEEETTSSC-----CSGGGCCTTCEEEE-
T ss_pred EEEEEEChhhHHHHHhCCCccEEEeeeeeeeecCCCceEEecCCCCCEEEEEEEECCCCC-----CCHHHhcCCCEEEe-
Confidence 44444556689999999999999985221 11222334456678899999988642 156677 4433322
Q ss_pred cCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee-cccccCCceeeecCCCCccceEEEEEeC
Q psy3760 198 DLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF-DSNRDKNLRSISASHLFGTTISRVIIKQ 276 (306)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 276 (306)
.+.+...++|.+.|+...++....+.+.. ...|.+=+++---.. ..++..+|+.+ +.....+..|+.++
T Consensus 121 ----kyp~l~~~yf~~~gi~~~ii~l~GsvE~a---p~~GlADaIvDivsTG~TLraNgL~~i---e~I~~ssA~LI~n~ 190 (289)
T 2vd3_A 121 ----EFPGITENYLREHGIDAEVVELTGSTEIA---PFIGVADLITDLSSTGTTLRMNHLRVI---DTILESSVKLIANR 190 (289)
T ss_dssp ----SCHHHHHHHHHHTTCCCEEEECSSCGGGT---TTTTSCSEEEEEESSTHHHHHTTEEEE---EEEEEECEEEEECH
T ss_pred ----CcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCcccEEEEEeCChHHHHHCCCEEe---EEEEeeEEEEEEcc
Confidence 34567788999999977666555665544 334444344332111 11245677777 22445577788776
Q ss_pred Ccc--ccHHHHHHHHHHhHHhhHH
Q psy3760 277 GTY--LRSYVYSFIKLLSPKLNRK 298 (306)
Q Consensus 277 ~~~--~~~~~~~~~~~l~~~~~~~ 298 (306)
... ....++.+++.++..+.++
T Consensus 191 ~s~~~k~~~i~~l~~rl~~v~~A~ 214 (289)
T 2vd3_A 191 ESYATKSGIIEELRTGIRGVIDAE 214 (289)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHHHHHHHHhc
Confidence 532 2356777777777765443
No 305
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=92.90 E-value=0.2 Score=38.63 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
+-+..+++..+++-. |..+.|+.|++|..||..+++++-+.||+
T Consensus 177 t~re~~vl~~~~~G~-s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 177 TARETEMLKWTAVGK-TYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp CHHHHHHHHHHHTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHcCC-CHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 456778888888766 99999999999999999999999999997
No 306
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=92.88 E-value=0.23 Score=33.24 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCcee
Q psy3760 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDI 48 (306)
Q Consensus 3 ~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~L 48 (306)
-++-++|....-.|.|+...|+.+|+|.+||.+++.+..+.|...|
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3455666666555669999999999999999999999888885544
No 307
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=92.84 E-value=3 Score=33.31 Aligned_cols=193 Identities=10% Similarity=0.072 Sum_probs=107.7
Q ss_pred cEEEEecccch-hhhhHHHHHHHHHhCCCcEEEEEe-CChhHHHHHHHcC--CeeEEEEcccc----------C--CCC-
Q psy3760 94 NLTIATTHTQA-RYALPKIIKEFTIQFPKVKLSLLQ-GNPKQITEMIRND--QADIAIVTEIL----------S--PSD- 156 (306)
Q Consensus 94 ~l~I~~~~~~~-~~~l~~~l~~~~~~~p~~~i~~~~-~~~~~~~~~l~~~--~~Di~i~~~~~----------~--~~~- 156 (306)
+|+|..-.+.. ..+...++..|.+++ +++|++.. .....+...+..| ..|+++..... . +..
T Consensus 2 ~l~v~~wgg~~~~~~~~~~~~~Fe~~~-gi~V~~~~~~~~~kl~a~~~~g~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~ 80 (320)
T 4euo_A 2 DLVFSSWGGTTQDAQKAAWAEKFMVET-GINVLQDGPTDYGKLKAMVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSV 80 (320)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHHHHHH-SCCEEEECCCCHHHHHHHHHTTCCCCSEEEEEHHHHHHHTTTTCBCCCCTTT
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHH-CCEEEEeCCCCHHHHHHHHHcCCCCceEEEcCHHHHHHHHHCCCcccCChhh
Confidence 46776655433 334456889999988 89998875 3345566666665 48999864110 0 011
Q ss_pred -----------CceeeccccceEEEEecCCCCCCCCCCcChhhhcCC-----CeEeec-CCCCcHH--------------
Q psy3760 157 -----------KLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNY-----PLITYD-LSFSGRI-------------- 205 (306)
Q Consensus 157 -----------~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~-----~~i~~~-~~~~~~~-------------- 205 (306)
.....++.....+++.+++.. ...+-+++||.+. .+.... +......
T Consensus 81 ~~~~~~~~~~~~~y~~p~~~~~~~l~yn~~~~--~~~P~tw~dl~~~~~~~g~i~~~~~~~~~~~~~al~~~G~~~~~~~ 158 (320)
T 4euo_A 81 IDKTKLDPRFVTDYSVGSFYYSFVIGCNVDSV--SACPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLY 158 (320)
T ss_dssp SCGGGBCGGGCBTTBEEEEEEEEEEEECGGGS--SCCCCSHHHHTCTTTSCSCEEEECSSSTTHHHHHHHHTTCCGGGCC
T ss_pred CChhhCChhhcccceeeeeeeeEEEEEEhhhh--CCCCCCHHHHhChhhCCCcEEEeCCCchHHHHHHHHHcCCChhhcC
Confidence 012345555677888887752 2256799999763 233433 2211110
Q ss_pred -----HHHHHHHhCCCceeEEEEecCHHHHHHHHHhccc-eeeeecceeccc--ccCCceeeecCCCCccceEEEEEeCC
Q psy3760 206 -----KLDREFSLQKLTPYIVLETINSDIIKTYVELRMG-IGIIASIAFDSN--RDKNLRSISASHLFGTTISRVIIKQG 277 (306)
Q Consensus 206 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~g-i~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~ 277 (306)
...+++. .+.+++ ...++.....+++.+|.. +++.....+... ....+.... +. .....-+++..++
T Consensus 159 ~~~~~~a~~~l~--~l~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~~~~~~~~~i~k~ 233 (320)
T 4euo_A 159 PLDLDRAFKKLD--TIKSDI-IWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSW-AQ-NITAADSLVVPKG 233 (320)
T ss_dssp SCCHHHHHHHHH--TTGGGE-EEECSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEE-EE-EEEEEEEEECBTT
T ss_pred HHHHHHHHHHHH--Hhhhce-eEeCCCchHHHHHHcCCEEEEEeecHHHHHHHhCCCCeEEEe-cC-ceeecceEEEECC
Confidence 1112222 234555 344566778888888843 444333222222 233455444 22 2222334566777
Q ss_pred ccccHHHHHHHHHHhHH
Q psy3760 278 TYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 278 ~~~~~~~~~~~~~l~~~ 294 (306)
.....++++|++++.+.
T Consensus 234 s~~~e~A~~fi~fl~s~ 250 (320)
T 4euo_A 234 TKNKDAAMKFIALATSA 250 (320)
T ss_dssp CSCHHHHHHHHHHHTSH
T ss_pred CCCHHHHHHHHHHHhCH
Confidence 77788999999999654
No 308
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=92.84 E-value=0.18 Score=38.79 Aligned_cols=44 Identities=9% Similarity=-0.001 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
+-+..+++..+++-. |....|+.|++|..||..+++++-+.||+
T Consensus 177 t~~e~~vl~~~~~g~-s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 177 SPREMLCLVWASKGK-TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp CHHHHHHHHHHHTTC-CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 446677787777766 99999999999999999999999999997
No 309
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=92.75 E-value=3.1 Score=33.13 Aligned_cols=199 Identities=12% Similarity=0.085 Sum_probs=108.5
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHc-C---CeeEEEEcccc--C-----------CC
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRN-D---QADIAIVTEIL--S-----------PS 155 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~-~---~~Di~i~~~~~--~-----------~~ 155 (306)
++|+|..... ...+..++..|.+++ +++|++...++.++.+.|.. + ..|+.+..... . ..
T Consensus 2 ~~l~v~~~~~--~~~~~~~~~~F~~~~-gi~V~~~~~~~~~~~~kl~a~~~~~~~Dv~~~~~~~~~~~~~~~g~l~~l~~ 78 (322)
T 3e13_X 2 SELNIYSARH--YNADFEIIKKFEEKT-GIKVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSS 78 (322)
T ss_dssp CEEEEEECCC--CTHHHHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHGGGCCCCEEEESCHHHHHHHHHTTCEECCCC
T ss_pred CEEEEEeCCC--HHHHHHHHHHHHHhh-CcEEEEEECCcHHHHHHHHHhccCCCCCEEEecCcHHHHHHHHCCCcccCCh
Confidence 4678877665 357888999999985 99999999888898888873 3 69999874211 0 00
Q ss_pred CCc-------------eeeccccceEEEEecCCCCCCCCCCcChhhhcCC----CeEeecCCCCc-HHHHHHHHHhCC--
Q psy3760 156 DKL-------------ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNY----PLITYDLSFSG-RIKLDREFSLQK-- 215 (306)
Q Consensus 156 ~~~-------------~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~----~~i~~~~~~~~-~~~~~~~~~~~~-- 215 (306)
..+ ...++.....+++.+++.++....+-+|+||.+. .+........+ ...+...+...|
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l~yn~~~~~~~~~p~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~~ 158 (322)
T 3e13_X 79 KYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDGNK 158 (322)
T ss_dssp HHHHHHSCGGGBCTTSSCEEEEEEEEEEEEETTSCCCCTTCCSGGGGGSGGGTTCEECCCTTSHHHHHHHHHHHHHHCHH
T ss_pred hHhhhhchhhhCCCCCcEEEeeceeEEEEECCccccCCCCCCCHHHHhhhhhcCeEeecCCCCchhHHHHHHHHHhcCHH
Confidence 000 0123333467888888862333356799999763 23333332221 111111111111
Q ss_pred --------CceeEE-EEecCHHHHHHHHHhcc-ceeeeecceeccc----------ccCCceee-ecC--CCCccceEEE
Q psy3760 216 --------LTPYIV-LETINSDIIKTYVELRM-GIGIIASIAFDSN----------RDKNLRSI-SAS--HLFGTTISRV 272 (306)
Q Consensus 216 --------~~~~~~-~~~~~~~~~~~~v~~g~-gi~~~p~~~~~~~----------~~~~l~~~-~~~--~~~~~~~~~l 272 (306)
+..+.. ....+.....+++.+|. ++++...+..... ....+..+ |-. .........+
T Consensus 159 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~ 238 (322)
T 3e13_X 159 EAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGI 238 (322)
T ss_dssp HHHHHHHHHHHHBSSSCCSSHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSSHHHHHHHHTEEEECTTTTTTCBCEEEEEE
T ss_pred HHHHHHHHHHHhcCcCCCCCcHHHHHHHHCCCCcEEeechHHHHHHHhccccchhccccceeEecCCCCCCCceeeeeee
Confidence 001111 11234455567778884 4555433321111 01344444 221 1222233355
Q ss_pred EEeCCccccHHHHHHHHHHhHH
Q psy3760 273 IIKQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~ 294 (306)
...++.....++++|++++.+.
T Consensus 239 ~i~~~s~~~~~A~~fi~fl~s~ 260 (322)
T 3e13_X 239 AMTKSSKNQDAAKKFMEFMLSP 260 (322)
T ss_dssp EEETTCSCHHHHHHHHHHHTSH
T ss_pred EEecCCCCHHHHHHHHHHHhCH
Confidence 5667777788999999999654
No 310
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=92.75 E-value=3.1 Score=33.15 Aligned_cols=184 Identities=15% Similarity=0.050 Sum_probs=101.7
Q ss_pred CcEEEEecccchhhhhHHHH-HHHHHhCCCcEEEEEeCC--------------------hhHHHHHHHcCCeeEEEEccc
Q psy3760 93 GNLTIATTHTQARYALPKII-KEFTIQFPKVKLSLLQGN--------------------PKQITEMIRNDQADIAIVTEI 151 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l-~~~~~~~p~~~i~~~~~~--------------------~~~~~~~l~~~~~Di~i~~~~ 151 (306)
..|+||+-.|-...+=...+ ..+.+.||++.++++... ..++.+.|.+|++|+++.+..
T Consensus 4 ~~irIgTR~S~LAl~Qa~~V~~~L~~~~p~~~~ei~~i~T~GD~i~d~pL~~iGgkGlFtkELe~aLl~g~iDiAVHSlK 83 (313)
T 1gtk_A 4 NVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMK 83 (313)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHHCTTCEEEEEECC-----------------CTTHHHHHHHHHTTSCSEEEEEGG
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEeeecCCcccccccHHHcCCccchHHHHHHHHHcCCCcEEEecCC
Confidence 45999998775554444444 566677999999886532 226779999999999998743
Q ss_pred cC---CCCCcee--eccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEEecC
Q psy3760 152 LS---PSDKLIS--IPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETIN 226 (306)
Q Consensus 152 ~~---~~~~~~~--~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (306)
.- .++++.. ++--.++.-++++++ ..++++|..--.|..+ +.|.. .++ .......+++-.-.|
T Consensus 84 DvPt~lp~gl~l~av~~RedprDalV~~~-------~~~l~~LP~Ga~VGTS---SlRR~-aQL-~~~rPdl~i~~lRGN 151 (313)
T 1gtk_A 84 DVPVEFPQGLGLVTICEREDPRDAFVSNN-------YDSLDALPAGSIVGTS---SLRRQ-CQL-AERRPDLIIRSLRGN 151 (313)
T ss_dssp GSCSCCCTTEEEEEECCCCCCCEEEECSS-------CSSGGGCCTTCEEECC---CHHHH-HHH-HHHCTTSEEECCCSC
T ss_pred CCCCCCCCCcEEEEEecCCCcceEEEECC-------CCChhhCCCCCEEecC---CHHHH-HHH-HHHCCCCEEEeCCCC
Confidence 22 2334332 222223333333322 2367777655555543 34332 222 333334455556689
Q ss_pred HHHHHHHHHhccceeee-ecceeccc-ccCCce-eeecCC---CCccceEEEEEeCCccccHHHHHHHHHH
Q psy3760 227 SDIIKTYVELRMGIGII-ASIAFDSN-RDKNLR-SISASH---LFGTTISRVIIKQGTYLRSYVYSFIKLL 291 (306)
Q Consensus 227 ~~~~~~~v~~g~gi~~~-p~~~~~~~-~~~~l~-~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~l 291 (306)
+++=+.-+..|..=+++ ..--.... ....+. .++.+. .+-+.-+.+-++.+ +..+..+++.+
T Consensus 152 V~TRL~KL~~g~~DaiiLA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGalaIe~r~~---d~~~~~ll~~l 219 (313)
T 1gtk_A 152 VGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLD---DSRTRELLAAL 219 (313)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETT---CHHHHHHHGGG
T ss_pred HHHHHHHhhCCCCCEEEHhhhHHHHcCCccccceeeChhhcCCCcCCceEEEEEccC---cHHHHHHHHHC
Confidence 99999999998544443 22212222 122222 345443 12256777777765 34455555444
No 311
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=92.72 E-value=0.32 Score=33.07 Aligned_cols=59 Identities=12% Similarity=-0.007 Sum_probs=40.6
Q ss_pred hCCCchHHHHHHHHHHHHcCceeEEe--c--CCCccccCHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3760 26 LYTSQPGVSKAIIELEEELSIDIFIR--H--GKRIRGLTKPGQAILRSIEIIMQEIEGLKKIG 84 (306)
Q Consensus 26 l~isq~~~s~~i~~LE~~lg~~Lf~R--~--~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~ 84 (306)
+++++++|...|++||+.==+.--.. . ++.+.++|+.|+..+.........+.+..+.+
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~~~~~~~~i~~i 110 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQWHVLCDGVGKL 110 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999998631221110 1 12334899999999988777666666555443
No 312
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=92.70 E-value=0.69 Score=36.43 Aligned_cols=60 Identities=8% Similarity=0.101 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHhc--CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-CCccccCHhHHHHH
Q psy3760 4 HQFRFVREAVRQN--FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-KRIRGLTKPGQAIL 67 (306)
Q Consensus 4 ~~l~~f~~v~~~~--~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-~~~~~lT~~G~~l~ 67 (306)
+-|.++-.+++.+ .|++.-|+.++++.||+.|.++.|++. |. ..|++ ++. +|++.-..+-
T Consensus 31 Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~-G~--v~~~~~~~Y-~LG~~~~~lg 93 (275)
T 3mq0_A 31 RAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL-DL--LARSADGTL-RIGPHSLRWA 93 (275)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT-TS--EEECTTSEE-EECTHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CC--EEECCCCcE-EehHHHHHHH
Confidence 3455666666643 379999999999999999999999974 44 45554 345 7887654443
No 313
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=92.69 E-value=0.73 Score=36.15 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=70.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecc
Q psy3760 22 AAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTH 101 (306)
Q Consensus 22 aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~~~~~~~~~l~I~~~~ 101 (306)
.=+.+.+|...++..+.+++ + |. .+-+.++.++..=..+++.+-. .........|+||...
T Consensus 113 ~L~~~~lt~~~~~~l~~~v~-~-~~-----------~~~~vA~~wl~~~~~~~~~W~~------~~~~~~~~~I~ig~~~ 173 (268)
T 2b4l_A 113 LLSQFKWTQDEMGEIMIKVE-E-GE-----------KPAKVAAEYVNKHKDQIAEWTK------GVQKVKGDKINLAYVA 173 (268)
T ss_dssp HHHTCCCCHHHHHHHHHHHH-T-TC-----------CHHHHHHHHHHHCHHHHHHHTT------TCCCCSSCEEEEEECC
T ss_pred HHHhcCCCHHHHHHHHHHHH-c-CC-----------CHHHHHHHHHHHCHHHHHHHhC------ccccccCcceEEEccC
Confidence 33445577777766666655 2 21 2444555555444444444332 3334455689999998
Q ss_pred cchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEc
Q psy3760 102 TQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVT 149 (306)
Q Consensus 102 ~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~ 149 (306)
.-....+..++..+.+.. ++++++...++....+.|.+|++|+....
T Consensus 174 w~e~~~~~~v~~~~Le~~-Gy~Ve~~~~~~~~~~~al~~G~iD~~~e~ 220 (268)
T 2b4l_A 174 WDSEIASTNVIGKVLEDL-GYEVTLTQVEAGPMWTAIATGSADASLSA 220 (268)
T ss_dssp CHHHHHHHHHHHHHHHHH-TCEEEEEECCTTHHHHHHHHTSSSEEEEE
T ss_pred ccHHHHHHHHHHHHHHHc-CCceEEEECChHHHHHHHHCCCCeEEehh
Confidence 777677777776666654 88888877777778999999999998654
No 314
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=92.62 E-value=0.45 Score=32.95 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhH
Q psy3760 7 RFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPG 63 (306)
Q Consensus 7 ~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G 63 (306)
...+.+.+.|.|.+++|+.+|+|.+||.+.+++.++. |.. .+.++.- .+|+.-
T Consensus 13 ~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~-g~~--~~~gr~~-~l~~~~ 65 (141)
T 1u78_A 13 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSY-GTS--KRAPRRK-ALSVRD 65 (141)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSGGGT-TCC--CCCCCCC-SSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHccccc-CCc--CCCCCCC-cCCHHH
Confidence 3344455666699999999999999999999987653 432 2345555 577643
No 315
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=92.57 E-value=1.2 Score=34.91 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=66.7
Q ss_pred eEeecCCCCcHHHHHHHHHhCCC--------ceeEEEEecCHHHHHHHHHhc-cceeeeecceecccccCCceeeecCC-
Q psy3760 194 LITYDLSFSGRIKLDREFSLQKL--------TPYIVLETINSDIIKTYVELR-MGIGIIASIAFDSNRDKNLRSISASH- 263 (306)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~~~~~l~~~~~~~- 263 (306)
.+..+.+++.+..|.+.+...+. ........++...+.+.|.+. .+|+++....+. ..+..++++.
T Consensus 13 vv~R~~~SGT~~~F~e~v~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~Va~~~~AIGY~~~~y~~----~~vk~l~idgV 88 (265)
T 4h1x_A 13 VISRENGSGTRGAFTEITGILKKDGDKKIDNTAKTAVIQNSTEGVLSAVQGNANAIGYISLGSLT----KSVKALEIDGV 88 (265)
T ss_dssp EEEECTTCHHHHHHHHHHTCEEESSSCEEECCCTTCEEESSHHHHHHHHHHCTTEEEEEEGGGCC----TTSEECEETTB
T ss_pred EEeCCCCCcHHHHHHHHHhhhCccccccccccCccceeeCCcHHHHHHHHcCCCcEEEeehHHhh----cccccceeccc
Confidence 44555666778888877642210 112234567777888888776 789998876553 3466666543
Q ss_pred -----------CCccceEEEEEeCCccccHHHHHHHHHHhHHhhHHHHHh
Q psy3760 264 -----------LFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFINK 302 (306)
Q Consensus 264 -----------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 302 (306)
.+..+++|++.+.+ .++.++.|++++.+.-.+..+++
T Consensus 89 ~Pt~e~i~~g~YPlsRply~y~~~~--~~~~vk~Fl~f~lS~~GQ~iv~~ 136 (265)
T 4h1x_A 89 KASRDTVLDGEYPLQRPFNIVWSSN--LSKLGQDFISFIHSKQGQQVVTD 136 (265)
T ss_dssp CCSHHHHHTTCSCSEEEEEEEECTT--CCHHHHHHHHHHHBHHHHHHHHH
T ss_pred CcchhhhhcCCCCeEEEEEEEECCC--CCHHHHHHHHHHhhcccceeeec
Confidence 13467888887654 48999999999986555555544
No 316
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=92.52 E-value=0.33 Score=31.57 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHc
Q psy3760 6 FRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEEL 44 (306)
Q Consensus 6 l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~l 44 (306)
+++.-..+..|.+-...|++||+|.++||+.|++-.+.+
T Consensus 24 ~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~ 62 (101)
T 2w7n_A 24 IEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 344445566667999999999999999999999998886
No 317
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=92.45 E-value=0.64 Score=32.18 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKKIGK 85 (306)
Q Consensus 6 l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~ 85 (306)
|+|+. .=+. |.++-|+.||+|.+++-..|..||.+==++=+.|++..++.+.+. . +..++.+-.+++...+.
T Consensus 17 LE~Lk--~G~~-~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s--~---y~~kV~dilrel~~~l~ 88 (165)
T 2vxz_A 17 LALLA--DGCK-TTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMD--Q---YRQLVDGMIREVERLVT 88 (165)
T ss_dssp HHHHT--TCCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHH--H---HHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hCCc-cHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHH--H---HHHHHHHHHHHHHHHHH
Confidence 44444 4455 889999999999999999999999998888888888777777655 2 22344444444444444
Q ss_pred h
Q psy3760 86 E 86 (306)
Q Consensus 86 ~ 86 (306)
.
T Consensus 89 s 89 (165)
T 2vxz_A 89 T 89 (165)
T ss_dssp H
T ss_pred H
Confidence 4
No 318
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=92.07 E-value=0.37 Score=35.25 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=37.0
Q ss_pred HhcCCHHHHHHHh--------CCCchHHHHHHHHHHHHcCceeEEe--------cCCCccccCHhHHHHHHH
Q psy3760 14 RQNFNLTEAAKAL--------YTSQPGVSKAIIELEEELSIDIFIR--------HGKRIRGLTKPGQAILRS 69 (306)
Q Consensus 14 ~~~~s~~~aA~~l--------~isq~~~s~~i~~LE~~lg~~Lf~R--------~~~~~~~lT~~G~~l~~~ 69 (306)
+-. +...-++.+ ++|+++|++.+++||+. | |+.+ .++.+.++|+.|+..+..
T Consensus 14 ~~~-~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~-G--lI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~ 81 (179)
T 1yg2_A 14 RDA-TGYDITKEFSASIGYFWKASHQQVYRELNKMGEQ-G--LVTCVLEPQEGKPDRKVYSITQAGRSALGE 81 (179)
T ss_dssp CCB-CHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHT-T--SEEECCC---------CEEECHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHC-C--CeEEEeecCCCCCCceEEEeChHHHHHHHH
Confidence 344 777888888 79999999999999985 2 2221 123334899999997765
No 319
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=92.00 E-value=0.47 Score=31.79 Aligned_cols=51 Identities=16% Similarity=0.032 Sum_probs=34.1
Q ss_pred hCCCchHHHHHHHHHHHHcCceeEEe-c------CCCccccCHhHHHHHHHHHHHHHHH
Q psy3760 26 LYTSQPGVSKAIIELEEELSIDIFIR-H------GKRIRGLTKPGQAILRSIEIIMQEI 77 (306)
Q Consensus 26 l~isq~~~s~~i~~LE~~lg~~Lf~R-~------~~~~~~lT~~G~~l~~~a~~il~~~ 77 (306)
+++|+++|+..|++||++ |.-=-.. . ++...++|+.|+..++...+-...+
T Consensus 52 ~~is~gtLY~~L~rLe~~-GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~~~~ 109 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDN-RAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARLWQNY 109 (115)
T ss_dssp EECCHHHHHHHHHHHHHT-TSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHC-CCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHHHHHH
Confidence 479999999999999985 2211111 1 1223489999999888765444433
No 320
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=91.99 E-value=0.56 Score=35.03 Aligned_cols=153 Identities=11% Similarity=0.147 Sum_probs=89.5
Q ss_pred EEEEEeCChhHHHHHHHcCCeeEEEEcccc---C---CCCCceeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEe
Q psy3760 123 KLSLLQGNPKQITEMIRNDQADIAIVTEIL---S---PSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLIT 196 (306)
Q Consensus 123 ~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~---~---~~~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~ 196 (306)
.+++.-....++..-+..|.+|+||+.... . +-..+.-..++.-++++.+|++.+. ++++.+....+
T Consensus 43 ~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~~~v~el~dLgfG~crl~vAvp~~~~~-------~~~~~~~RIAT 115 (208)
T 1z7m_E 43 DLQIIFGKPNDVITFLEHGIVDIGFVGKDTLDENDFDDYYELLYLKIGQCIFALASYPDFSN-------KNFQRHKRIAS 115 (208)
T ss_dssp SCCEEEECHHHHHHHHHTTSCSEEEEEHHHHHHSSCCCEEEEEEETTCCCEEEEEECGGGGG-------CCCSSCEEEEE
T ss_pred CEEEEEECchhHHHHHhCCCccEEEeeeeeeeecCCCCeEEeeccccCCEEEEEEEECCCcc-------chhcCCCEEEE
Confidence 455666667899999999999999985221 1 1122233445677899999887643 22332222221
Q ss_pred ecCCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee-cccccCCceeeecCCCCccceEEEEEe
Q psy3760 197 YDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF-DSNRDKNLRSISASHLFGTTISRVIIK 275 (306)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~ 275 (306)
.+.+...++|.+.|+...++....+.+.. ..-|.+=+++---.. ..++..+|+.+. .....+..|+.+
T Consensus 116 -----kyp~l~~~yf~~~gi~~~ii~l~GsvE~a---p~~GlAD~IvDivsTG~TLr~NgL~~ie---~I~~ssA~LI~n 184 (208)
T 1z7m_E 116 -----KYPRVTKKYFAQKQEDIEIIKLEGSVELG---PVVGLADAIVDIVETGNTLSANGLEVIE---KISDISTRMIVN 184 (208)
T ss_dssp -----SCHHHHHHHHHHTTCCEEEEECSSCTTHH---HHTTSCSEEEEEESSSHHHHTTTCEEEE---EEEECCEEEEEE
T ss_pred -----CchHHHHHHHHHcCCceEEEECCCceeec---cCCCcccEEEEEeCChHHHHHCCCEEeE---EEEeeEEEEEEc
Confidence 34567788999999987666555666554 444544444433211 223567788774 234557788877
Q ss_pred CCccc--cHHHHHHHHHHhH
Q psy3760 276 QGTYL--RSYVYSFIKLLSP 293 (306)
Q Consensus 276 ~~~~~--~~~~~~~~~~l~~ 293 (306)
+.... ...++.+++.++.
T Consensus 185 ~~s~~~k~~~i~~l~~rl~~ 204 (208)
T 1z7m_E 185 KSSFKFKKDKIIEMVERLED 204 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred chHhHHHHHHHHHHHHHHHH
Confidence 65421 2334444444443
No 321
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=91.97 E-value=0.59 Score=37.12 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=61.7
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCceeec---cccc
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKLISIP---CYQW 166 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~~~~~---l~~~ 166 (306)
...||||..+..... +++..+.+.+-...+++...+..++.+.|.+|++|++.++.... ....+...+ +...
T Consensus 6 ~~~lriG~~~~~~~~---pl~~a~~~g~~~~~~~~~~~~~~~l~~al~~G~iDia~~~~~~~~~~~~~~~il~~~~~~~~ 82 (291)
T 2nxo_A 6 RTRPRVGHIQFLNCL---PLYWGLARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCD 82 (291)
T ss_dssp -CCCEEEEECSGGGH---HHHHHHHHTSGGGGCEEEEECHHHHHHHHHTTSCSEEEEEHHHHHHTGGGEEEEEEEEEEES
T ss_pred cCCeEEEEecCCCch---hhHHHHHhCCCCCCeEEEECCHHHHHHHHHcCCCCEeehhHHHHHhCcccEEEcCCcccccc
Confidence 347999998874432 22223333331234444566778899999999999998752110 011121111 1111
Q ss_pred eE---EEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHH-HHHHHHhC-CCceeEE
Q psy3760 167 EY---VIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIK-LDREFSLQ-KLTPYIV 221 (306)
Q Consensus 167 ~~---~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~-~~~~~~~~-~~~~~~~ 221 (306)
.. ++++++ . +++||.+.+......+ ..... +..++++. |+.++.+
T Consensus 83 g~~~sv~lv~~-------~--~i~DLkGKkIav~~~s-~t~~~ll~~ll~~~~Gl~~~~v 132 (291)
T 2nxo_A 83 GPVMSCVIVSQ-------V--PLDRLDGARVALGSTS-RTSVRLAQLLLSERFGVQPDYY 132 (291)
T ss_dssp SCCSSEEEEES-------S--CTTSCSSSEEEEETTC-SHHHHHHHHHHHHTSCCCCEEE
T ss_pred CCceEEEEEeC-------C--CHHHhCCCEEEeCCCC-hHHHHHHHHHHHHhhCCCCeEE
Confidence 00 122222 1 2378988877766544 44344 44566665 8877544
No 322
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=91.83 E-value=0.13 Score=31.65 Aligned_cols=26 Identities=19% Similarity=0.029 Sum_probs=24.8
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
|+..-|+.+++|.+|+-+.|+.||+.
T Consensus 26 sv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 26 KTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 58999999999999999999999986
No 323
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=91.79 E-value=0.13 Score=30.41 Aligned_cols=21 Identities=29% Similarity=0.169 Sum_probs=18.8
Q ss_pred CHHHHHHHhCCCchHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAII 38 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~ 38 (306)
++...|+.+|+|++|||+.|.
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 578899999999999999873
No 324
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=91.77 E-value=2.9 Score=31.07 Aligned_cols=148 Identities=12% Similarity=0.105 Sum_probs=87.5
Q ss_pred EEEEeCChhHHHHHHHcCCeeEEEEcccc---C--CCCCceeeccccceEEEEecCCCCCCCCCCcChhhhcCCCeEeec
Q psy3760 124 LSLLQGNPKQITEMIRNDQADIAIVTEIL---S--PSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYD 198 (306)
Q Consensus 124 i~~~~~~~~~~~~~l~~~~~Di~i~~~~~---~--~~~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~ 198 (306)
+++.-....++..-+..|.+|+||+..+. . +-..+.-..++.-++++.+|++. +++ +....+
T Consensus 47 i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~----------~~~-~~RIAT-- 113 (206)
T 1ve4_A 47 VALLELRNKDVPIYVDLGIAEIGVVGKDVLLDSGRDLFEPVDLGFGACRLSLIRRPGD----------TGP-IRRVAT-- 113 (206)
T ss_dssp EEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHCCSCCEEEEECCCSCEEEEEEECTTC----------CSC-CCEEEE--
T ss_pred eEEEEECchhHHHHHhCCCccEEEeeeeeeeecCCCeEEeeccccCcEEEEEEEECCc----------ccC-CCEEEE--
Confidence 45555567799999999999999985221 1 11223334455778888888764 233 222222
Q ss_pred CCCCcHHHHHHHHHhCCCceeEEEEecCHHHHHHHHHhccceeeeeccee-cccccCCceeeecCCCCccceEEEEEeCC
Q psy3760 199 LSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF-DSNRDKNLRSISASHLFGTTISRVIIKQG 277 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 277 (306)
.+.+...++|.+.|+...++....+.+.. ..-|.+=+++---.. ..++..+|+.+. .....+..|+.++.
T Consensus 114 ---kyp~l~~~yf~~~gi~~~ii~l~GsvE~a---p~~GlAD~IvDivsTG~TLraNgL~~ie---~I~~ssA~LI~n~~ 184 (206)
T 1ve4_A 114 ---KYPNFTARLLKERGWAADVVELSGNIELA---AVTGLADAVVDVVQTGATLRAAGLVEVE---VLAHSTARLVVNRQ 184 (206)
T ss_dssp ---SCHHHHHHHHHHTTCCCEEEECSSCTHHH---HHTTSSSEEEEEESSSHHHHHTTCEEEE---EEEEECEEEEECHH
T ss_pred ---CchHHHHHHHHHCCCcEEEEECCCceeec---cCCCCceEEEEeccCHHHHHHCCCEEeE---EEEeeEEEEEEcch
Confidence 34567788999999987766666666654 444544444433211 122456787773 23455777887665
Q ss_pred cc--ccHHHHHHHHHHhH
Q psy3760 278 TY--LRSYVYSFIKLLSP 293 (306)
Q Consensus 278 ~~--~~~~~~~~~~~l~~ 293 (306)
.. ....++.+++.++.
T Consensus 185 s~~~k~~~i~~l~~rl~~ 202 (206)
T 1ve4_A 185 ALKLKRAVLKPLIQRLRE 202 (206)
T ss_dssp HHHHTHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 32 12345555555544
No 325
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=91.74 E-value=0.24 Score=38.03 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
+-+..+++..+++-. |....|+.|++|..||..+++++-+.||+
T Consensus 175 t~~e~~vl~~~~~g~-s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 175 DPKEATYLRWIAVGK-TMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CHHHHHHHHHHTTTC-CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 345677777777665 99999999999999999999999999997
No 326
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=91.34 E-value=0.38 Score=37.74 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=40.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
+-+..+++..+++-. |..+.|+.|++|..||..+++++-+.||+.
T Consensus 199 t~re~~vl~~~~~G~-s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 199 SQREYDIFHWMSRGK-TNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CHHHHHHHHHHHTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 456788888888766 999999999999999999999999999873
No 327
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=91.33 E-value=1.7 Score=35.05 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=103.9
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCC-hhHHHHHHHcC--CeeEEEEccc----------c--CCC
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN-PKQITEMIRND--QADIAIVTEI----------L--SPS 155 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~-~~~~~~~l~~~--~~Di~i~~~~----------~--~~~ 155 (306)
..++|+|..=. .++-+.++..|.+++ +++|++...+ .+++...|..| ..|+++.... . .+.
T Consensus 9 ~~~~L~vy~W~---~y~~~~~i~~Fek~t-GIkV~~~~~~s~e~~~~kl~ag~~~~DVv~~~~~~~~~~~~~gll~~ld~ 84 (333)
T 4gl0_A 9 GSNTLTIYNWG---DYIDPSLITKFEKET-GIKVIYQTFDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENLLIPLDH 84 (333)
T ss_dssp -CCEEEEEEET---TCSCHHHHHHHHHHH-CCEEEEEEESCHHHHHHHHHTCSSCCSEECCBHHHHHHHHHTTCBCCCCG
T ss_pred CCCEEEEEeCC---ccCCHHHHHHHHHHH-CCEEEEEeCCCHHHHHHHHHcCCCCCeEEEeCHHHHHHHHHcCCcccccc
Confidence 35689998632 233467899999998 8999987754 44577788776 5799874310 0 000
Q ss_pred --------------------CCceeeccccceEEEEecCCCCCCCCCCcChhhhcCCC----eEeecCCCC---------
Q psy3760 156 --------------------DKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYP----LITYDLSFS--------- 202 (306)
Q Consensus 156 --------------------~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~----~i~~~~~~~--------- 202 (306)
.+....+..-...+++..++. +....+-+++||.+-. ....+....
T Consensus 85 ~~~~n~~~~~~~~~~~~~~~~~~y~vp~~~~~~~i~yn~~~-~~~~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~ 163 (333)
T 4gl0_A 85 SKLPNEKYLDPRFMDLSFDDDNKYSMPYFWGTLGIIYNKEM-FPDKNFDTWNALFDPELKNQILLIDGAREVMGLGLNSL 163 (333)
T ss_dssp GGCGGGGGBCGGGSSCGGGGGGSSEEEEEEEEEEEEEETTT-CTTCCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHT
T ss_pred ccccccccCCHHHhhhccCCCCceEeceeeeeeeeeechhh-cccCCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHH
Confidence 012234455556677777765 2333455788886522 333222110
Q ss_pred -------cHHHHHHHHHh-CCCceeEEEEecCHHHHHHHHHhc-cceeeeecceeccc--ccCCceeeecCCCCccceEE
Q psy3760 203 -------GRIKLDREFSL-QKLTPYIVLETINSDIIKTYVELR-MGIGIIASIAFDSN--RDKNLRSISASHLFGTTISR 271 (306)
Q Consensus 203 -------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~ 271 (306)
....+...... ....++.....+ .....++..| ..+++......... ....+..+-..+......-+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~ 241 (333)
T 4gl0_A 164 GYSLNDTNKAHLQAARDKLETMTPNVKAIVG--DEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDN 241 (333)
T ss_dssp TCCTTCCCHHHHHHHHHHHHHHGGGEEEEES--TTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEE
T ss_pred hhcccCCCHHHHHHHHHHHHhhccccceecc--hhhhhhhhccchheehhhhHHHHHHHhhccccccccCCCCCccccce
Confidence 00111111110 011223322222 2334555666 44444444332222 33445544433333333445
Q ss_pred EEEeCCccccHHHHHHHHHHhHH
Q psy3760 272 VIIKQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~l~~~ 294 (306)
++..++.+...++++|++++.+-
T Consensus 242 ~~I~k~a~n~e~A~~fi~fllsp 264 (333)
T 4gl0_A 242 MVIPKTAKNVDGAHKFINFMLKP 264 (333)
T ss_dssp EECBTTCSCHHHHHHHHHHHHSH
T ss_pred EEEEcCCCCHHHHHHHHHHhcCH
Confidence 66688888899999999998653
No 328
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=91.27 E-value=0.38 Score=29.05 Aligned_cols=42 Identities=7% Similarity=0.053 Sum_probs=31.2
Q ss_pred hhHHHHHHHHH----hcCCHHHHHHHhCCCchHHHHHHHHHHHHcC
Q psy3760 4 HQFRFVREAVR----QNFNLTEAAKALYTSQPGVSKAIIELEEELS 45 (306)
Q Consensus 4 ~~l~~f~~v~~----~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg 45 (306)
++-++|....- .|.|+...|+.+|+|.++|.+.+.+.-+.|.
T Consensus 14 ~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 14 REAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34455555552 3449999999999999999997777666664
No 329
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=91.21 E-value=1.8 Score=39.91 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHhCCCcEEEEEeCC-------------hhHHHHHHHcCCeeEEEEccccCC--CCCce-eeccccceEE
Q psy3760 106 YALPKIIKEFTIQFPKVKLSLLQGN-------------PKQITEMIRNDQADIAIVTEILSP--SDKLI-SIPCYQWEYV 169 (306)
Q Consensus 106 ~~l~~~l~~~~~~~p~~~i~~~~~~-------------~~~~~~~l~~~~~Di~i~~~~~~~--~~~~~-~~~l~~~~~~ 169 (306)
.+...++..+.+.. +.++++.... .+.++..|.+|++|+++....... ...+. +.|.....++
T Consensus 414 G~~~dl~~~~a~~l-~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~ 492 (823)
T 3kg2_A 414 GYCVDLAAEIAKHC-GFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS 492 (823)
T ss_dssp SHHHHHHHHHHHHH-TCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEE
T ss_pred EEHHHHHHHHHHHc-CCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEE
Confidence 35567788887765 5566666643 678999999999999987422111 12233 4577788888
Q ss_pred EEecCCC
Q psy3760 170 IIVPLDH 176 (306)
Q Consensus 170 ~v~~~~~ 176 (306)
+++++..
T Consensus 493 ~~v~~~~ 499 (823)
T 3kg2_A 493 IMIKKPQ 499 (823)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 8887754
No 330
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=91.12 E-value=0.43 Score=32.68 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHh-------cCCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAVRQ-------NFNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 4 ~~l~~f~~v~~~-------~~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
.++.+++.+... - |.+.-|+.+++|.+++++.|+.||+.
T Consensus 33 ~e~~vll~L~~~~~~~~~~p-s~~~LA~~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 33 GELVLLLHMQSFFEEGVLFP-TPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp HHHHHHHHHHHHHTTTCSSC-CHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445555566543 4 89999999999999999999999985
No 331
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=91.05 E-value=1.4 Score=30.19 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=34.4
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQ 64 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~ 64 (306)
|...-|+.+++|+++|.++++.|+++ |. +-.+.++|. ..++...
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~-Gl-i~~~~g~G~-~V~~~~~ 73 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEA-GI-LYKKRGIGM-FVSAQAP 73 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTT-TS-EEEETTTEE-EECTTHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-Cc-EEEecCCEE-EEecCch
Confidence 67789999999999999999999976 65 444556776 4666543
No 332
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=90.95 E-value=5.6 Score=32.39 Aligned_cols=199 Identities=6% Similarity=-0.088 Sum_probs=111.7
Q ss_pred CCCcEEEEeccc-chhhhhHHHHHHHHHhCCCcEEEEEeC--ChhHHHHHHHcC--CeeEEEEcccc-----------CC
Q psy3760 91 DTGNLTIATTHT-QARYALPKIIKEFTIQFPKVKLSLLQG--NPKQITEMIRND--QADIAIVTEIL-----------SP 154 (306)
Q Consensus 91 ~~~~l~I~~~~~-~~~~~l~~~l~~~~~~~p~~~i~~~~~--~~~~~~~~l~~~--~~Di~i~~~~~-----------~~ 154 (306)
..++|+|....+ ....+...++..|.++ ++++|++... ....+...+..| ..|+.+..... .+
T Consensus 31 ~~~~l~v~~~~~~~~~~~~~~~~~~Fe~~-~gi~V~~~~~~~~~~kl~~~~~~g~~~~Dv~~~~~~~~~~~~~g~l~~l~ 109 (365)
T 3rpw_A 31 QSNVVIMQDPGGGYGDALRKVMYDPFEKE-TGIKVVTVQEARSGPRIKAQAEAGKAQWDLTFIFDQETKLLGDCCLADID 109 (365)
T ss_dssp CCSEEEEEECCHHHHHHHHHHTHHHHHHH-HSCEEEEEECSCCHHHHHHHHHHTCCCCSBEEECHHHHHHTHHHHBCCCC
T ss_pred cCCeEEEEecCCchhHHHHHHHHHHHHHh-hCCEEEEecCCCcHHHHHHHHHcCCCCceEEEcCHHHHHHHhCCCcccCC
Confidence 456899988764 3345677899999998 6999999876 344555566566 37999874210 00
Q ss_pred CC-----------C-------ceeeccccceEEEEecCCCCCCCCCCcChhhhcCC-----CeEeecCCCCcH-------
Q psy3760 155 SD-----------K-------LISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNY-----PLITYDLSFSGR------- 204 (306)
Q Consensus 155 ~~-----------~-------~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~-----~~i~~~~~~~~~------- 204 (306)
.. + ....+......+++.+++..-....+-+|+||.+. ......+.....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~l~ynk~~~~~~~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~ 189 (365)
T 3rpw_A 110 YSKLSESAHKTLAAMPDNLKRKKGVALQVIGVGLVYNKDKFKGDKAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMAD 189 (365)
T ss_dssp GGGSCHHHHHHHHTSCGGGEETTEEEEEEEEEEEEEETTTSCTTSSCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHT
T ss_pred hhhcCchhhhhhhhcCccccCCeEEeeeeeeEEEEEEhhhcCCCCCCCCHHHHhChhhCCCceeCCcCchHHHHHHHHHc
Confidence 00 1 11345555677888888864222356799999664 233333221110
Q ss_pred ------------HHHHHHHHhCCCceeEEEEecCHHHHHHHHHhcc-ceeeeecceeccc--ccCCceeeecCCCCccce
Q psy3760 205 ------------IKLDREFSLQKLTPYIVLETINSDIIKTYVELRM-GIGIIASIAFDSN--RDKNLRSISASHLFGTTI 269 (306)
Q Consensus 205 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~-gi~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~ 269 (306)
....++++. +.++......+.....+++.+|. .+++.....+... ....+.... +. .....
T Consensus 190 g~~~~~~~~~~~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-pg-~~~~~ 265 (365)
T 3rpw_A 190 GVTKDKLYPIDMDRALKKLKE--IKPHVVKWWTTAAQPPQLILDGEADMCLAYTGSMSKLALEGAPIDLTF-NQ-GFVYY 265 (365)
T ss_dssp TCCTTSCCSCCHHHHHHHHHH--HGGGEEEEECSTTHHHHHHHTTSCSEEEEEHHHHHHHHHHTCSEEEEE-EE-EEEEE
T ss_pred CCChhhcCchhHHHHHHHHHH--HhhhcccccCCccHHHHHHHcCCeEEEEehhHHHHHHHhCCCCeEEee-CC-eeeec
Confidence 111122222 23444334455556778888884 3444433332222 223344333 22 22223
Q ss_pred EEEEEeCCccccHHHHHHHHHHhHH
Q psy3760 270 SRVIIKQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~~l~~~ 294 (306)
-++...++.....++++|++++.+.
T Consensus 266 ~~~~i~k~s~~~~~A~~fi~~l~s~ 290 (365)
T 3rpw_A 266 DFFSIPKGAPNYDNALKLLSWRLDP 290 (365)
T ss_dssp EEEECBTTCTTHHHHHHHHHHHTCH
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCH
Confidence 3455577777788999999998653
No 333
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=90.94 E-value=0.52 Score=29.63 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=33.3
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHhCCCchHHHHHHHHHHHHcCcee
Q psy3760 5 QFRFVREAVR----QNFNLTEAAKALYTSQPGVSKAIIELEEELSIDI 48 (306)
Q Consensus 5 ~l~~f~~v~~----~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~L 48 (306)
+-++|....- .|.|+...|+.||+|.++|.+.+.+.-..|...+
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555442 3449999999999999999999998888885543
No 334
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=90.70 E-value=0.36 Score=29.37 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=21.6
Q ss_pred HHHHhcCCHHHHHHHhCCCchHHHHH
Q psy3760 11 EAVRQNFNLTEAAKALYTSQPGVSKA 36 (306)
Q Consensus 11 ~v~~~~~s~~~aA~~l~isq~~~s~~ 36 (306)
.+.+.|.|..+-|+.+|+|+++||+.
T Consensus 17 ~l~~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 17 GLKKRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp HHHTTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 34466679999999999999999954
No 335
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.34 E-value=0.86 Score=29.20 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHhcCC----HHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec
Q psy3760 2 NLHQFRFVREAVRQNFN----LTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH 52 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~~s----~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~ 52 (306)
+-.+..++..+.+.| + ...-+.++++.|.++++.|+.||.. .|+.|-
T Consensus 36 t~~E~lVy~~I~~aG-n~GIw~kdL~~~tnL~~~~vtkiLK~LE~k---~lIK~V 86 (95)
T 2yu3_A 36 DNQEKLVYQIIEDAG-NKGIWSRDVRYKSNLPLTEINKILKNLESK---KLIKAV 86 (95)
T ss_dssp SHHHHHHHHHHHHHT-TSCEEHHHHHHHHTCCHHHHHHHHHHHHHH---TSEEEE
T ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhC---CCEEEe
Confidence 345677788888877 5 4578899999999999999999984 565554
No 336
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=90.32 E-value=0.07 Score=40.86 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
..++++..+.+...|++.-|+.+++|+||+|++|+.||+.
T Consensus 13 ~R~~IL~~L~~g~~s~~ELa~~lglS~stVs~hL~~Le~a 52 (232)
T 2qlz_A 13 VRRDLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMERE 52 (232)
T ss_dssp HHHHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445555555433477888999999999999999999874
No 337
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=90.29 E-value=0.61 Score=36.41 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=39.7
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC--CCccccCHhHHHH
Q psy3760 6 FRFVREAVRQ--NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG--KRIRGLTKPGQAI 66 (306)
Q Consensus 6 l~~f~~v~~~--~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~--~~~~~lT~~G~~l 66 (306)
+.++-.+.+. +.|++.-|+.+++++||++|.++.|++. |. ..|.+ ++. +|++.-..+
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~-G~--v~~~~~~~~Y-~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA-GF--VEQVEGARSY-RLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT-TS--EEECSSSSEE-EECTTHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CC--EEEcCCCCcE-EcCHHHHHH
Confidence 4444444432 2379999999999999999999999974 44 34443 565 687664443
No 338
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=90.18 E-value=2.1 Score=28.81 Aligned_cols=76 Identities=8% Similarity=0.090 Sum_probs=52.3
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHhC----CCchHHHHHHHHHHHHcCceeEEecCCCcc-c-cCHhHHHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQN-FNLTEAAKALY----TSQPGVSKAIIELEEELSIDIFIRHGKRIR-G-LTKPGQAILRSIEIIM 74 (306)
Q Consensus 2 ~~~~l~~f~~v~~~~-~s~~~aA~~l~----isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~-~-lT~~G~~l~~~a~~il 74 (306)
+..++.++..+.+.| -|.+.-|+.++ +++||+++.|++||+. |.---.++++..+ . +|+.|..+...+++++
T Consensus 9 t~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k-Glv~R~~~~r~~~~~~~~~~~~~~~~~~~~~~ 87 (126)
T 1sd4_A 9 SMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKK-EIIKRYKSENIYFYSSNIKEDDIKMKTAKTFL 87 (126)
T ss_dssp CHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC-CceEEEeCCCeEEEEEecCHHHHHHHHHHHHH
Confidence 345677778887654 26788899997 5999999999999984 4444444444431 2 4667777777777777
Q ss_pred HHHH
Q psy3760 75 QEIE 78 (306)
Q Consensus 75 ~~~~ 78 (306)
+.+.
T Consensus 88 ~~~~ 91 (126)
T 1sd4_A 88 NKLY 91 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 339
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=90.10 E-value=0.76 Score=29.44 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHh-CCCchHHHHHHHHHHHHc
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKAL-YTSQPGVSKAIIELEEEL 44 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l-~isq~~~s~~i~~LE~~l 44 (306)
+++-.+++-..++.|+.+-++.+ |...+||+.+++++|+.+
T Consensus 34 RqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 34 RQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 55666667777778999999999 899999999999999976
No 340
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=90.06 E-value=6.1 Score=31.40 Aligned_cols=185 Identities=10% Similarity=0.093 Sum_probs=93.3
Q ss_pred cEEEEecccch---hhhhHHHHHHHHHh-CCCcEEEEEeC----ChhHHHHHHHcCCeeEEEEccccCC--CCCce--ee
Q psy3760 94 NLTIATTHTQA---RYALPKIIKEFTIQ-FPKVKLSLLQG----NPKQITEMIRNDQADIAIVTEILSP--SDKLI--SI 161 (306)
Q Consensus 94 ~l~I~~~~~~~---~~~l~~~l~~~~~~-~p~~~i~~~~~----~~~~~~~~l~~~~~Di~i~~~~~~~--~~~~~--~~ 161 (306)
++|++...+-. ...+..+...+.+. .-.+++++... +..+.++.+..|.+|++++...... .+.+. ..
T Consensus 2 ~lk~~~~~~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~l 81 (301)
T 2pfz_A 2 KWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGL 81 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGS
T ss_pred eeEecccCCCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhhccccCchhhhhcC
Confidence 46777643322 12223333334333 34688888774 3478999999999999987522110 00000 00
Q ss_pred c-----------------------cccceEEEEec----CCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhC
Q psy3760 162 P-----------------------CYQWEYVIIVP----LDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQ 214 (306)
Q Consensus 162 ~-----------------------l~~~~~~~v~~----~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~ 214 (306)
| +....+.++.. ..+-..+++.-+++||.+.++-.. + . .....++..
T Consensus 82 Pf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~pI~s~~DlkG~KiR~~--~-~---~~~~~~~~l 155 (301)
T 2pfz_A 82 PFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQGIFANRDIKQVSDMKGLKWRAY--S-P---VTAKIAELV 155 (301)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCEEEESSCCSSGGGGTTCEEEES--S-H---HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcceeeCCCCCChHHhcCCEEecC--C-h---hHHHHHHHc
Confidence 0 00112222221 122223344458999999988764 2 1 235677777
Q ss_pred CCceeEEEEecCHHHHHHHHHhc--cceeeeecceeccccc-CCceeeecCCCCccceEEEEEeCCc--cccHHHHHHHH
Q psy3760 215 KLTPYIVLETINSDIIKTYVELR--MGIGIIASIAFDSNRD-KNLRSISASHLFGTTISRVIIKQGT--YLRSYVYSFIK 289 (306)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~g--~gi~~~p~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ 289 (306)
|..|.. -....+..++++| +|. ..|......... .-...+-....... ...++.+++. .+++..|+.+.
T Consensus 156 Ga~pv~----~~~~E~y~ALq~G~vDg~-~~~~~~~~~~~~~ev~ky~~~~~~~~~-~~~~~~n~~~~~~L~~~~q~~i~ 229 (301)
T 2pfz_A 156 GAQPVT----VQQAELAQAMATGVIDSY-MSSGSTGFDTKTYEYIKKFYDTEAWLP-KNAVLVNKKAFDALDPATQQALK 229 (301)
T ss_dssp TCEEEE----CCGGGHHHHHHTTSCSEE-EECHHHHHHTTGGGTCCEEECCCCCCC-EEEEEEEHHHHHTSCHHHHHHHH
T ss_pred CCccee----cCHHHHHHHHhcCeeeEE-ecCccccccccHHHHhhhheecccccc-eeEEEEcHHHHhcCCHHHHHHHH
Confidence 876633 2566677778888 565 444433322211 22233333332222 3345555442 34666666554
Q ss_pred H
Q psy3760 290 L 290 (306)
Q Consensus 290 ~ 290 (306)
.
T Consensus 230 ~ 230 (301)
T 2pfz_A 230 K 230 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 341
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=89.96 E-value=7.1 Score=32.01 Aligned_cols=187 Identities=7% Similarity=-0.041 Sum_probs=96.4
Q ss_pred CcEEEEecccch----hhhhHHHHHHHHHhCC-CcEEEEEeC----ChhHHHHHHHcCCeeEEEEccccCC--CCCce--
Q psy3760 93 GNLTIATTHTQA----RYALPKIIKEFTIQFP-KVKLSLLQG----NPKQITEMIRNDQADIAIVTEILSP--SDKLI-- 159 (306)
Q Consensus 93 ~~l~I~~~~~~~----~~~l~~~l~~~~~~~p-~~~i~~~~~----~~~~~~~~l~~~~~Di~i~~~~~~~--~~~~~-- 159 (306)
.++|++....-. ......+...+.+.-. .+++++... +..+.++.+..|.+|++++...... .+.+.
T Consensus 32 ~~l~~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~~~ 111 (365)
T 2hzl_A 32 VTWRLASSFPKSLDTIFGGAEVLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALA 111 (365)
T ss_dssp CEEEEEESSCTTCTTTTHHHHHHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHT
T ss_pred eEEEEeccCCCCCCchhHHHHHHHHHHHHhcCCeEEEEEecCCcccCHHHHHHHHHcCccceeecchhhhcccChhHhhh
Confidence 479999854322 1233344444554433 488888875 4678999999999999998632110 01000
Q ss_pred -eecc------------------------ccceEEEE--ecCC--CCC-CCCCCcChhhhcCCCeEeecCCCCcHHHHHH
Q psy3760 160 -SIPC------------------------YQWEYVII--VPLD--HPL-LLLNSISLKEISNYPLITYDLSFSGRIKLDR 209 (306)
Q Consensus 160 -~~~l------------------------~~~~~~~v--~~~~--~~l-~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~ 209 (306)
..|+ ....+.++ ...+ +.. .+++.-+++||.+..+-.. + ....
T Consensus 112 ~~lPf~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~~pI~s~~DLkG~KiR~~--~-----~~~~ 184 (365)
T 2hzl_A 112 AAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGGNTGVQMGGWFRREINTVADMQGLKMRVG--G-----FAGK 184 (365)
T ss_dssp TCCTTCCCHHHHHHHHHHSSHHHHHHHHHGGGTEEEEEEEECCSBCCCEESSCCCSTGGGTTCEEECC--T-----THHH
T ss_pred hcCCCCCCHHHHHHHHHcCChHHHHHHHHHHCCCEEEeccCCCcccceeecCCCCChHHhCCCEEecC--C-----cHHH
Confidence 0111 11122222 2222 211 2344458999999987665 2 3356
Q ss_pred HHHhCCCceeEEEEecCHHHHHHHHHhc--cceee-eeccee-cccccCCceeeecCC-CCccceEEEEEeCCc--cccH
Q psy3760 210 EFSLQKLTPYIVLETINSDIIKTYVELR--MGIGI-IASIAF-DSNRDKNLRSISASH-LFGTTISRVIIKQGT--YLRS 282 (306)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g--~gi~~-~p~~~~-~~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~--~~~~ 282 (306)
.++..|..|.. -.+..+...+++| +|... .|.... ..+ ..-...+-... ........++.+++. ..++
T Consensus 185 ~~~~lGa~pv~----~~~~e~y~ALq~G~VDg~~~~~p~~~~~~~~-~ev~k~~~~~~~~~~~~~~~~v~n~~~~~~L~~ 259 (365)
T 2hzl_A 185 VMERLGVVPQQ----IAGGDIYPALEKGTIDATEWVGPYDDEKLGF-FKVAPYYYYPGWWEGGPTVHFMFNKSAYEGLTP 259 (365)
T ss_dssp HHHTTTCEEEC----CCTTSHHHHHHHTSCSEECCSCHHHHHHHTG-GGTCCEEEECBTTCSSCEEEEEEEHHHHHHSCH
T ss_pred HHHHcCCccee----cCHHHHHHHHhCCCcceeeccCccchhhcCh-HHhhheeeccCccccccceEEEEcHHHHhcCCH
Confidence 77888876643 2444566777788 56543 233221 111 11122222232 222123455555542 3466
Q ss_pred HHHHHHHHH
Q psy3760 283 YVYSFIKLL 291 (306)
Q Consensus 283 ~~~~~~~~l 291 (306)
..++++...
T Consensus 260 ~~q~~l~~a 268 (365)
T 2hzl_A 260 TYQSLLRTA 268 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 342
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=89.93 E-value=1.1 Score=29.87 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=36.0
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQA 65 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~ 65 (306)
|...-|+.+++|.+++.++++.|+++ |. +-.+.++|. ..++....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~-Gl-i~~~~~~G~-~V~~~~~~ 79 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDD-NV-IEKRRGLGM-LVKAGARQ 79 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-TS-EEEETTTEE-EECTTHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CC-EEEecCCeE-EEeCCchH
Confidence 67789999999999999999999986 65 556667787 46665543
No 343
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=89.85 E-value=0.16 Score=39.84 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=39.7
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhH
Q psy3760 5 QFRFVREAVR--QNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPG 63 (306)
Q Consensus 5 ~l~~f~~v~~--~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G 63 (306)
-++++..+.+ .+.|++.-|+.+++++||++|.++.|++. | +..|.+++. +|++..
T Consensus 23 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~-G--~v~~~~~~Y-~Lg~~~ 79 (265)
T 2ia2_A 23 GLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL-G--YVATDGSAF-WLTPRV 79 (265)
T ss_dssp HHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH-T--SEEESSSEE-EECGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-C--CEEecCCEE-EEcHHH
Confidence 3445555543 22379999999999999999999999983 3 345556666 787764
No 344
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=89.84 E-value=0.44 Score=35.06 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=46.4
Q ss_pred HHhcCCHHHHHHHhCCCchHHHHHHHHH--HHHcCceeEEecCCCccccCHhHHHHHHHHHHH---HHHHHHHHHHH
Q psy3760 13 VRQNFNLTEAAKALYTSQPGVSKAIIEL--EEELSIDIFIRHGKRIRGLTKPGQAILRSIEII---MQEIEGLKKIG 84 (306)
Q Consensus 13 ~~~~~s~~~aA~~l~isq~~~s~~i~~L--E~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~i---l~~~~~~~~~~ 84 (306)
.+.|.|=...|+.||||+++|||.|+.- +..+ +.||-= .+++ -.|.+..|...+..+ -..++++...+
T Consensus 21 y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~l-v~lfp~-~~~l--s~p~~~~L~k~~~~l~~~~~~l~eLi~~~ 93 (192)
T 1zx4_A 21 KNDGMSQKDIAAKEGLSQAKVTRALQAASAPEEL-VALFPV-QSEL--TFSDYKTLCAVGDEMGNKNLEFDQLIQNI 93 (192)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHH-HTTCSC-GGGC--CHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHHHhccchhh-HHHcCC-cccC--ccchHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4566699999999999999999998763 3444 555543 3443 347788888777766 44445555443
No 345
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=89.77 E-value=0.58 Score=33.33 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 11 ~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
.+.+.|.|..++|+.+++|.+||++.+++.++.
T Consensus 36 ~l~~~G~s~~~IA~~lgis~~TV~rwl~r~~~~ 68 (159)
T 2k27_A 36 DLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 (159)
T ss_dssp HHHHHTCCHHHHHHHHTCCSHHHHHHHCCSSTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 333455599999999999999999999988765
No 346
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=89.70 E-value=0.62 Score=28.89 Aligned_cols=40 Identities=8% Similarity=0.159 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHh---cCCHHHHHHHh-----CCCchHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAVRQ---NFNLTEAAKAL-----YTSQPGVSKAIIELEEE 43 (306)
Q Consensus 4 ~~l~~f~~v~~~---~~s~~~aA~~l-----~isq~~~s~~i~~LE~~ 43 (306)
+.+.++-.+.+. ..|...-++.+ ++|.+||.|.|+.||+.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 455566666543 23888999999 99999999999999985
No 347
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=89.66 E-value=0.42 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=24.4
Q ss_pred cCCHHHHHHHhCCCchHHHHHHHHHHH
Q psy3760 16 NFNLTEAAKALYTSQPGVSKAIIELEE 42 (306)
Q Consensus 16 ~~s~~~aA~~l~isq~~~s~~i~~LE~ 42 (306)
|.|+..+|+.+|||.++|.+.+++.+.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 449999999999999999999998765
No 348
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=89.15 E-value=0.1 Score=34.21 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.5
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
|...-|+.+++|+++++++++.||++ |.- -.+.++|. ..++
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L~~~-Gli-~~~~g~G~-~v~~ 77 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSE-GLV-SSRGALGT-VVEK 77 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTS-SCC-EEETTTEE-ESCS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CCE-EEeCCCeE-EEcc
Confidence 78899999999999999999999854 542 33444565 3443
No 349
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=89.11 E-value=0.39 Score=39.12 Aligned_cols=109 Identities=9% Similarity=0.133 Sum_probs=59.8
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHHHHH----hhccCCCC
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKKIGK----EFSAYDTG 93 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~----~~~~~~~~ 93 (306)
|+...|+..|+|++||||.|. +++. ..++= -+++++..+++-..-. .+..+.
T Consensus 12 ti~diA~~agVS~~TVSr~Ln--------------~~~~--vs~~t------r~rV~~~~~~lgY~pn~~a~~l~~~~-- 67 (344)
T 3kjx_A 12 TLRDVSEASGVSEMTVSRVLR--------------NRGD--VSDAT------RARVLAAAKELGYVPNKIAGALASNR-- 67 (344)
T ss_dssp CHHHHHHHHCCCSHHHHHHHT--------------TCSC--CCHHH------HHHHHHHHHHHTCCCCCCCSCSTTSC--
T ss_pred CHHHHHHHHCCCHHHHHHHHc--------------CCCC--CCHHH------HHHHHHHHHHhCCCCCHHHHHhhcCC--
Confidence 789999999999999999884 2222 22221 1223333333221111 111222
Q ss_pred cEEEEec-ccchhhhhHHHHHHHHHhCC--CcEEEEEeCC--h---hHHHHHHHcCCeeEEEEcc
Q psy3760 94 NLTIATT-HTQARYALPKIIKEFTIQFP--KVKLSLLQGN--P---KQITEMIRNDQADIAIVTE 150 (306)
Q Consensus 94 ~l~I~~~-~~~~~~~l~~~l~~~~~~~p--~~~i~~~~~~--~---~~~~~~l~~~~~Di~i~~~ 150 (306)
.-+||+- +.+...++..++..+.+... ++.+.+.... . .+.++.+.+.++|-.|+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~ 132 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAG 132 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3345542 23345566677766665533 5566554432 2 2356677888999988853
No 350
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=88.71 E-value=0.63 Score=31.06 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEE 42 (306)
Q Consensus 6 l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~ 42 (306)
++++..+++-. |...-|+.+|+|..||||.-+.|..
T Consensus 66 ~eV~klL~~G~-syreIA~~~g~S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 66 LQVAKMIKQGY-TYATIEQESGASTATISRVKRSLQW 101 (119)
T ss_dssp HHHHHHHHHTC-CHHHHHHHHCCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCC-CHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77788888876 9999999999999999998887753
No 351
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=88.56 E-value=0.63 Score=28.80 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHhc-CCHHHHHHHhC----CCchHHHHHHHHHHHHcCceeEEecCC
Q psy3760 3 LHQFRFVREAVRQN-FNLTEAAKALY----TSQPGVSKAIIELEEELSIDIFIRHGK 54 (306)
Q Consensus 3 ~~~l~~f~~v~~~~-~s~~~aA~~l~----isq~~~s~~i~~LE~~lg~~Lf~R~~~ 54 (306)
..++.++..+.+.+ .|...-|+.++ ++++|+++.|++||+. |.---.+.++
T Consensus 9 ~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k-Glv~r~~~gr 64 (82)
T 1p6r_A 9 DAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK-GALNHHKEGR 64 (82)
T ss_dssp HHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC-CCeEEEecCC
Confidence 34566666666532 27788899987 7999999999999974 4433334343
No 352
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=88.55 E-value=0.26 Score=34.31 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=34.4
Q ss_pred hCCCchHHHHHHHHHHHHcCceeEEe--c-----CCCccccCHhHHHHHHHHHHHHHHH
Q psy3760 26 LYTSQPGVSKAIIELEEELSIDIFIR--H-----GKRIRGLTKPGQAILRSIEIIMQEI 77 (306)
Q Consensus 26 l~isq~~~s~~i~~LE~~lg~~Lf~R--~-----~~~~~~lT~~G~~l~~~a~~il~~~ 77 (306)
+++|.++|...|++||++ |.-=... . ++...++|+.|+..+....+-.+.+
T Consensus 64 ~~is~gtLYp~L~rLe~~-GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~~~l 121 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDE-QIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERY 121 (138)
T ss_dssp EECCHHHHHHHHHHHHHT-TSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHC-CCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHHHHHHH
Confidence 479999999999999985 2211111 1 1222489999999888776544443
No 353
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.16 E-value=0.94 Score=36.72 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCC---HHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHH
Q psy3760 6 FRFVREAVRQNFN---LTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILR 68 (306)
Q Consensus 6 l~~f~~v~~~~~s---~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~ 68 (306)
.+++.++++.+.+ .+.+|+.|+++.+++.+.+++.-.+. -|..+.++|. ..|+.|..++.
T Consensus 266 ~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~--gli~~~~~g~-~~t~~~~~~~~ 328 (338)
T 3pfi_A 266 LRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLAN--GYIERTAKGR-IASAKSYSALK 328 (338)
T ss_dssp HHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHT--TSEEEETTEE-EECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHc--CceecCCCcc-cccHHHHHHhc
Confidence 3466666663313 89999999999999999998443343 4567888888 59999988764
No 354
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=87.99 E-value=0.91 Score=33.92 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 3 ~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
-+..+++..+++.. |-..-|+.+++|..||..++++|-+.||+
T Consensus 157 ~rE~~vl~~l~~g~-s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 157 PRERDILKLIAQGL-PNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 35667788888877 99999999999999999999999999986
No 355
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=87.78 E-value=0.74 Score=29.55 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
..+.+..++.+-+.|++.||++.+||++.+.+..+..++.
T Consensus 37 ~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~~~~ 76 (95)
T 2jrt_A 37 RKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAH 76 (95)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4567777777777799999999999999999999887543
No 356
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=87.39 E-value=0.47 Score=38.85 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=31.5
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCcEE
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKK-IGKEFSAYDTGNLT 96 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~-~~~~~~~~~~~~l~ 96 (306)
|+...|+..|+|.+||||.|..-. -+.-..+. +..+.++ ++.-.-+ ..+.+..+.++.|-
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~~~------~vs~~tr~---------rV~~~a~----~lgY~pn~~a~~l~~~~~~~Ig 74 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKKDS------PISSETRE---------RILKVVK----DMNYVPDQVAGSLTTKRSGFVG 74 (355)
T ss_dssp ----------------------------------------------------------------------------CEEE
T ss_pred cHHHHHHHhCCCHHHHHHHHCCCC------CCCHHHHH---------HHHHHHH----HhCCCcCHHHHhhhcCCCCEEE
Confidence 678899999999999999997432 11111111 1111111 1111110 01111222233344
Q ss_pred EEecccchhhhhHHHHHHHHHhC--CCcEEEEEeCC--hh---HHHHHHHcCCeeEEEEcc
Q psy3760 97 IATTHTQARYALPKIIKEFTIQF--PKVKLSLLQGN--PK---QITEMIRNDQADIAIVTE 150 (306)
Q Consensus 97 I~~~~~~~~~~l~~~l~~~~~~~--p~~~i~~~~~~--~~---~~~~~l~~~~~Di~i~~~ 150 (306)
+-++. +...++..++..+.+.. -++.+.+.... .. +.++.+.+..+|-.|+..
T Consensus 75 vi~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 134 (355)
T 3e3m_A 75 LLLPS-LNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSY 134 (355)
T ss_dssp EEESC-SBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EEeCC-CCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 43332 34455555665554432 25666665432 21 456677788999988853
No 357
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=87.35 E-value=1 Score=31.84 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
++-++|. ..-.|.|+...|+.||+|.++|.+++.+.-+.|-.
T Consensus 113 ~~r~v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 113 FEKEVLT-YLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HHHHHHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3445666 44456699999999999999999999888777643
No 358
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=87.13 E-value=1.3 Score=35.66 Aligned_cols=109 Identities=12% Similarity=0.140 Sum_probs=56.6
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHH----HHHhhccCCCC
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKK----IGKEFSAYDTG 93 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~----~~~~~~~~~~~ 93 (306)
++...|+..|+|.+||||.|..- .++ .+.= -+++++..+++-. ..+.+..+.
T Consensus 4 ti~dvA~~agVS~~TVSrvln~~-------------~~v---s~~t------r~rV~~aa~~lgY~pn~~ar~l~~~~-- 59 (332)
T 2hsg_A 4 TIYDVAREASVSMATVSRVVNGN-------------PNV---KPST------RKKVLETIERLGYRPNAVARGLASKK-- 59 (332)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTC-------------TTS---CHHH------HHHHHHHHHHHTCCSCHHHHHHTTC---
T ss_pred CHHHHHHHhCCCHHHHHHHHcCC-------------CCC---CHHH------HHHHHHHHHHHCCCcCHHHHHHHhCC--
Confidence 78899999999999999999751 222 1111 1122222222211 112223323
Q ss_pred cEEEEecc-cchhhhhHHHHHHHHHhC--CCcEEEEEeCChh-----HHHHHHHcCCeeEEEEcc
Q psy3760 94 NLTIATTH-TQARYALPKIIKEFTIQF--PKVKLSLLQGNPK-----QITEMIRNDQADIAIVTE 150 (306)
Q Consensus 94 ~l~I~~~~-~~~~~~l~~~l~~~~~~~--p~~~i~~~~~~~~-----~~~~~l~~~~~Di~i~~~ 150 (306)
.-+||+-. .+...++..++..+.+.. -+..+.+.....+ +.++.+.+.++|-.|+..
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~ 124 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMS 124 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEec
Confidence 34455432 233445555555544332 1556665543321 346667778899888753
No 359
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=86.96 E-value=3.5 Score=27.92 Aligned_cols=42 Identities=29% Similarity=0.211 Sum_probs=32.5
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHh
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~ 62 (306)
|...-|+.+|+|+++|.++++.|+++ |. +-.+.++|. ..++.
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~-Gl-i~~~~g~G~-~V~~~ 78 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQ-KV-IRTIPGKGT-FITGN 78 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-TS-EEEETTTEE-EECSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CC-EEEecCCeE-EEccC
Confidence 77899999999999999999999875 44 334456676 46653
No 360
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=86.95 E-value=2.4 Score=34.54 Aligned_cols=199 Identities=11% Similarity=0.010 Sum_probs=106.5
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHc------CCeeEEEEcccc-C-----------
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRN------DQADIAIVTEIL-S----------- 153 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~------~~~Di~i~~~~~-~----------- 153 (306)
.++|+|...... ..+..++..|.++||+++|++...++.+....+.. ...|+.+..... .
T Consensus 33 ~~~L~v~~~~~~--~~~~~~~~~Fe~~~Pgi~V~~~~~~~~~~~~kl~~~~~ag~~~~DV~~~~~~~~~~~~~~~g~l~~ 110 (355)
T 3c9h_A 33 AQTLVVYSSLDE--PLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSAMDLQVKLSNDGYAQR 110 (355)
T ss_dssp -CEEEEEECSCH--HHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCCBCSEEEESCHHHHHHHHHTTCEEC
T ss_pred CCEEEEEeCCCH--HHHHHHHHHHHHHCcCeEEEEEeCChHHHHHHHHHHHhcCCCCCCEEEecchHHHHHHHhCCCccc
Confidence 567888776543 46789999999999999999999888776666632 358999864211 0
Q ss_pred -CC---CCc--------eeeccccceEEEEecCCCCCCCCCCcChhhhcC--------C--CeEeecCCCC-c-HHHH--
Q psy3760 154 -PS---DKL--------ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISN--------Y--PLITYDLSFS-G-RIKL-- 207 (306)
Q Consensus 154 -~~---~~~--------~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~--------~--~~i~~~~~~~-~-~~~~-- 207 (306)
.. ..+ ...++.....+++.+++..-....+-+|+||.+ + .+....+... . ...+
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~YNk~~~~~~~~P~tw~dL~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 190 (355)
T 3c9h_A 111 SDLAMSARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSR 190 (355)
T ss_dssp CCCTTTTTSCGGGEETTTEEECBCEEEEEEEEGGGCSSSCCCCSHHHHHHHHHHTHHHHTTCEEEECTTC-CHHHHHHHH
T ss_pred CCChhhhhCcchheeCCeEEEEecCcEEEEEEHHhcCCCCCCCCHHHHHHHHHhcchhhCCceeecCccccchHHHHHhc
Confidence 00 001 013455566788888775322234679999864 1 3343333211 1 1110
Q ss_pred --------HHHHHhCCCceeEEEEecCHHHHHHHHHhccc-eeeee-cceecc-c-ccCCceeeecCCCCccceEEEEEe
Q psy3760 208 --------DREFSLQKLTPYIVLETINSDIIKTYVELRMG-IGIIA-SIAFDS-N-RDKNLRSISASHLFGTTISRVIIK 275 (306)
Q Consensus 208 --------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~g-i~~~p-~~~~~~-~-~~~~l~~~~~~~~~~~~~~~l~~~ 275 (306)
.++++.. .++......+.....+++.+|.. +++.. ...... . ....+......+.......++...
T Consensus 191 ~~~~~~~a~~~l~~l--~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~ 268 (355)
T 3c9h_A 191 DQEQFGDIWSVIKAM--GAAGVKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVP 268 (355)
T ss_dssp HHHHCTTHHHHHHHH--HHTTCEEESCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTEEEECCSSCEEEECCEEEEE
T ss_pred chhccHHHHHHHHHH--HhcCCeecCCcHHHHHHHHCCCeEEEEecchhHHHHHHhcCCCeeEEecCCCceeeeeEEEEE
Confidence 1111111 01111123455677788888843 33321 111111 1 123444432112122222234456
Q ss_pred CCccccHHHHHHHHHHhHH
Q psy3760 276 QGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~ 294 (306)
++.....++++|++++.+.
T Consensus 269 k~s~~~eaA~~Fi~fl~s~ 287 (355)
T 3c9h_A 269 EAAANPELGRRYLEFFMSK 287 (355)
T ss_dssp TTBSCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHcCH
Confidence 6666788899999999653
No 361
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=86.92 E-value=0.28 Score=29.22 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=18.5
Q ss_pred CHHHHHHHhCCCchHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i 37 (306)
++...|+.+|+|++|||+.+
T Consensus 11 t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTT
T ss_pred CHHHHHHHHCCCHHHHHHHH
Confidence 78899999999999999976
No 362
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=86.87 E-value=10 Score=30.07 Aligned_cols=186 Identities=11% Similarity=0.068 Sum_probs=92.9
Q ss_pred cEEEEecccchh---hhhHHHHHHHHHh-CCCcEEEEEeC----ChhHHHHHHHcCCeeEEEEccccC--CCCCce--ee
Q psy3760 94 NLTIATTHTQAR---YALPKIIKEFTIQ-FPKVKLSLLQG----NPKQITEMIRNDQADIAIVTEILS--PSDKLI--SI 161 (306)
Q Consensus 94 ~l~I~~~~~~~~---~~l~~~l~~~~~~-~p~~~i~~~~~----~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~~--~~ 161 (306)
++|++...+-.. ..+..+...+.+. .-.+++++... +..+.++.+..|.+|++++..... ..+.+. ..
T Consensus 3 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~l 82 (301)
T 2pfy_A 3 SWTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSV 82 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGS
T ss_pred EEEecccCCCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhhhccCcccccccC
Confidence 577777543221 1223333334333 34577777664 346899999999999998752211 001000 00
Q ss_pred cc-----------------------ccceEEEEec----CCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhC
Q psy3760 162 PC-----------------------YQWEYVIIVP----LDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQ 214 (306)
Q Consensus 162 ~l-----------------------~~~~~~~v~~----~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~ 214 (306)
|. ....+.++.. ..+-..+++.-+++||.+.++-.. + . .....++..
T Consensus 83 Pfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~pI~s~~DlkG~KiR~~--~-~---~~~~~~~~l 156 (301)
T 2pfy_A 83 PFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQGIYTKKPVAALADLKGTRFRAY--S-A---STSHMAALM 156 (301)
T ss_dssp TTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCEEEESSCCSSGGGGTTCEEEEC--S-H---HHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcceecCCCCCCHHHhCCCEEeec--C-h---hHHHHHHHc
Confidence 00 0112222221 122223344458999999988664 2 1 235677888
Q ss_pred CCceeEEEEecCHHHHHHHHHhc--cceeeeecceeccccc-CCceeeecCCCCccceEEEEEeCCc--cccHHHHHHHH
Q psy3760 215 KLTPYIVLETINSDIIKTYVELR--MGIGIIASIAFDSNRD-KNLRSISASHLFGTTISRVIIKQGT--YLRSYVYSFIK 289 (306)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~g--~gi~~~p~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ 289 (306)
|..|... ....+..++++| +|. ..|......... .-...+-....... ...++.+++. .+++..|+.+.
T Consensus 157 Ga~pv~~----~~~E~y~ALq~G~vDg~-~~~~~~~~~~~~~ev~k~~~~~~~~~~-~~~~~~n~~~~~~L~~~~q~~i~ 230 (301)
T 2pfy_A 157 GAVPTTV----QTPEVPQAFSTGVIDAM-LTSPATGVDSQAWDYVKYYYDAQAFIP-QSFVIANKRAFQRLPAEVRQAVL 230 (301)
T ss_dssp TSEEEEC----CGGGHHHHHHTTSCSBE-EECHHHHHHTTGGGTCCEEEECCCCCC-EEEEEEEHHHHHHSCHHHHHHHH
T ss_pred CCcceec----cHHHHHHHHhcceeeeE-ecCccccccccHHHHhhhhcccccccc-eeeEEEcHHHHhcCCHHHHHHHH
Confidence 9766432 556677777888 565 444433222111 11223322332222 3345555542 34666666554
Q ss_pred HH
Q psy3760 290 LL 291 (306)
Q Consensus 290 ~l 291 (306)
..
T Consensus 231 ~a 232 (301)
T 2pfy_A 231 DA 232 (301)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 363
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=86.83 E-value=4.9 Score=27.61 Aligned_cols=72 Identities=8% Similarity=0.014 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHHh--cCCHHHHHHHhC----CCchHHHHHHHHHHHHcCceeEEecCCCc-c--ccCHhHHHHHHHHHH
Q psy3760 2 NLHQFRFVREAVRQ--NFNLTEAAKALY----TSQPGVSKAIIELEEELSIDIFIRHGKRI-R--GLTKPGQAILRSIEI 72 (306)
Q Consensus 2 ~~~~l~~f~~v~~~--~~s~~~aA~~l~----isq~~~s~~i~~LE~~lg~~Lf~R~~~~~-~--~lT~~G~~l~~~a~~ 72 (306)
+..++.++..+.+. +.+.+.-|+.++ ++++|+++.|++||+. |.---.++++.. + .+|+.|. +...++.
T Consensus 8 t~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k-Glv~r~~~~r~~~~~~~lt~~~~-~~~~~~~ 85 (138)
T 2g9w_A 8 GDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKK-NLVLQIRDDRAHRYAPVHGRDEL-VAGLMVD 85 (138)
T ss_dssp CHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT-TSEEEEC---CCEEEESSCHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHC-CCEEEEecCCeEEEEeCCCHHHH-HHHHHHH
Confidence 34577788888763 237888899998 8999999999999984 443333333332 1 3677765 3444444
Q ss_pred HHH
Q psy3760 73 IMQ 75 (306)
Q Consensus 73 il~ 75 (306)
+++
T Consensus 86 ~~~ 88 (138)
T 2g9w_A 86 ALA 88 (138)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 364
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=86.75 E-value=1.2 Score=36.06 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=0.0
Q ss_pred CHHHHHHHhCCCchHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIE 39 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~ 39 (306)
|+...|+..|+|.+||||.|..
T Consensus 6 ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 6 TMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp ----------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 7788999999999999999975
No 365
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=86.63 E-value=11 Score=30.14 Aligned_cols=194 Identities=19% Similarity=0.231 Sum_probs=106.9
Q ss_pred CCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCCh-hHHHHHHHcC--CeeEEEEcccc------------CC
Q psy3760 90 YDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP-KQITEMIRND--QADIAIVTEIL------------SP 154 (306)
Q Consensus 90 ~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~-~~~~~~l~~~--~~Di~i~~~~~------------~~ 154 (306)
...++|+|..-.. ..-..++..|.+++ +++|++...++ +++...|..| ..|+++..... .+
T Consensus 6 ~~~~~l~v~~w~~---~~~~~~~~~Fe~~~-gi~V~~~~~~~~~~~~~kl~a~~~~~Dv~~~~~~~~~~~~~~g~l~~l~ 81 (330)
T 4eqb_A 6 RDSQKLVIYNWGD---YIDPELLTQFTEET-GIQVQYETFDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLLVPLD 81 (330)
T ss_dssp --CCEEEEEEETT---CSCHHHHHHHHHHH-CCEEEEEEESSHHHHHHHHHHCCSCCSEECCBHHHHHHHHHTTCBCCCC
T ss_pred CCCCeEEEEeccc---cCCHHHHHHHHHHH-CCEEEEEeCCCHHHHHHHHhcCCCCCCEEEECHHHHHHHHHCCCccCCC
Confidence 3456888887543 34468999999999 99999987654 4577777765 49999853100 00
Q ss_pred C--------------------CCceeeccccceEEEEecCCCCCCCCCCcChhhhcCC----CeEeecCCCCcHHHHHHH
Q psy3760 155 S--------------------DKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNY----PLITYDLSFSGRIKLDRE 210 (306)
Q Consensus 155 ~--------------------~~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~----~~i~~~~~~~~~~~~~~~ 210 (306)
. ...-..|......+++.+++.. ...+-+++||.+. .+..... ....+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~y~vP~~~~~~~l~Ynkd~~--~~~p~tw~el~~~~~~g~~~~~~~---~~~~~~~~ 156 (330)
T 4eqb_A 82 YSKIEGIENIGPEFLNQSFDPGNKFSIPYFWGTLGIVYNETMV--DEAPEHWDDLWKLEYKNSIMLFDG---AREVLGLG 156 (330)
T ss_dssp GGGCCCGGGBCGGGSSCTTSGGGSSCEEEEEEEEEEEEEGGGC--SSCCCSGGGGGCGGGTTCEEEESC---HHHHHHHH
T ss_pred hhhCcChhhCCHHHHccCcCCCCeEEEEEecccEEEEEEHHHc--CCCCCCHHHHhChHhcCCeEEecC---HHHHHHHH
Confidence 0 0122355556677788888753 3456799999762 1222221 11122222
Q ss_pred HHhCC--------------------CceeEEEEecCHHHHHHHHHhcc-ceeeeecceeccc--ccCCceeeecCCCCcc
Q psy3760 211 FSLQK--------------------LTPYIVLETINSDIIKTYVELRM-GIGIIASIAFDSN--RDKNLRSISASHLFGT 267 (306)
Q Consensus 211 ~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~g~-gi~~~p~~~~~~~--~~~~l~~~~~~~~~~~ 267 (306)
+...| +.++.... + .....+...+|. ++++.....+... ....+...-.......
T Consensus 157 l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~ 234 (330)
T 4eqb_A 157 LNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAI-V-ADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEASNL 234 (330)
T ss_dssp HHHTTCCTTCCCHHHHHHHHHHHHTTGGGEEEE-E-STTHHHHHHTTCCSEEEEEHHHHHHHHHHCTTEEEECCTTCEEE
T ss_pred HHHcCCCCCCCCHHHHHHHHHHHHHHhhHhhee-C-cHHHHHHHhcCCEEEEEechHHHHHHHhhCCCeEEEeCCCccce
Confidence 22222 22333322 2 234567777774 4444444333322 2344444322222222
Q ss_pred ceEEEEEeCCccccHHHHHHHHHHhHH
Q psy3760 268 TISRVIIKQGTYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~l~~~ 294 (306)
..-.++..++.....++.+|++++.+.
T Consensus 235 ~~~~~~i~~~s~~~~~A~~fi~~l~s~ 261 (330)
T 4eqb_A 235 WFDNMVIPKTVKNQDSAYAFINFMLKP 261 (330)
T ss_dssp EEEEEBCBTTCSCHHHHHHHHHHHHSH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHhcCH
Confidence 233455577777788999999998643
No 366
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=86.37 E-value=0.23 Score=35.02 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=34.5
Q ss_pred hCCCchHHHHHHHHHHHHcCceeEEe---------cCCCccccCHhHHHHHHHHHHHHHHH
Q psy3760 26 LYTSQPGVSKAIIELEEELSIDIFIR---------HGKRIRGLTKPGQAILRSIEIIMQEI 77 (306)
Q Consensus 26 l~isq~~~s~~i~~LE~~lg~~Lf~R---------~~~~~~~lT~~G~~l~~~a~~il~~~ 77 (306)
++++.++|...|++||++ | |+.+ .++...++|+.|+..+....+-.+.+
T Consensus 74 ~~is~gtLYp~L~rLE~~-G--lI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~~~l 131 (148)
T 2zfw_A 74 YRLSDTVLYTALKFLEDE-Q--IISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERY 131 (148)
T ss_dssp EECCSHHHHHHHHHHHHT-S--SEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHC-C--CEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHHHHHHH
Confidence 469999999999999985 2 2221 12333489999999888776544443
No 367
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=86.35 E-value=1.6 Score=28.29 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHh-cCCHHHHHHHhCCCchHHHHHHHHH
Q psy3760 12 AVRQ-NFNLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 12 v~~~-~~s~~~aA~~l~isq~~~s~~i~~L 40 (306)
+.+. . |...-|+.+|+|+++|||-=+.|
T Consensus 54 L~~ge~-TQREIA~~lGiS~stISRi~r~L 82 (101)
T 1jhg_A 54 LLRGEM-SQRELKNELGAGIATITRGSNSL 82 (101)
T ss_dssp HHHCCS-CHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHcCCc-CHHHHHHHHCCChhhhhHHHHHH
Confidence 3344 5 99999999999999999873333
No 368
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=85.87 E-value=3.2 Score=33.48 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=57.6
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHH----HHHhhccCCCC
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKK----IGKEFSAYDTG 93 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~----~~~~~~~~~~~ 93 (306)
++...|+..|+|.+||||.|.. ..++ +++ .-+++++..+++-. ..+.+..+...
T Consensus 2 ti~diA~~agVS~~TVSrvLn~-------------~~~v---s~~------tr~rV~~~a~~lgY~pn~~ar~l~~~~~~ 59 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK-------------TRFV---AEE------TRNAVWAAIKELHYSPSAVARSLKVNHTK 59 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT-------------CSCC---CHH------HHHHHHHHHHHHTCCCCHHHHHHHHTCCS
T ss_pred CHHHHHHHHCCCHHHHHHHHcC-------------cCCC---CHH------HHHHHHHHHHHhCCCCCHHHHhhccCCCC
Confidence 6788999999999999999982 1222 221 11222222222210 11122222333
Q ss_pred cEEEEecccchhhhhHHHHHHHHHhC--CCcEEEEEeCC--hh---HHHHHHHcCCeeEEEEc
Q psy3760 94 NLTIATTHTQARYALPKIIKEFTIQF--PKVKLSLLQGN--PK---QITEMIRNDQADIAIVT 149 (306)
Q Consensus 94 ~l~I~~~~~~~~~~l~~~l~~~~~~~--p~~~i~~~~~~--~~---~~~~~l~~~~~Di~i~~ 149 (306)
.|-+-++. +...++..++..+.+.. -+..+.+.... .. +.++.+.++++|-.|+.
T Consensus 60 ~Igvi~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~ 121 (340)
T 1qpz_A 60 SIGLLATS-SEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVM 121 (340)
T ss_dssp EEEEEESC-SCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEeCC-CCChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 34333333 34456666665554432 25666654432 22 24667778889988875
No 369
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=85.19 E-value=1.7 Score=32.72 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 3 ~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
-+..+++..+++.- |-..-|+.|++|..||..+++++-+.||+.
T Consensus 152 ~rE~~vL~~l~~g~-s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 152 DQERTLLGLLSEGL-TNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 35567777778776 999999999999999999999999999873
No 370
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=85.15 E-value=6.4 Score=26.54 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=33.1
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPG 63 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G 63 (306)
|...-|+.+++|.++|.++++.|+++ |. +-.+.|+|. ..++..
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~~-G~-i~~~~g~G~-~V~~~~ 81 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELERA-GY-IYAKRGMGS-FVTSDK 81 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-TS-EEEETTTEE-EECCCH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-Ce-EEEecCCEE-EEecCc
Confidence 67899999999999999999999986 43 344556776 355543
No 371
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=85.15 E-value=1.6 Score=35.34 Aligned_cols=112 Identities=11% Similarity=0.110 Sum_probs=31.8
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCcEE
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKK-IGKEFSAYDTGNLT 96 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~-~~~~~~~~~~~~l~ 96 (306)
|+...|+..|+|++||||.|..= +.+....+ ++..+.++ ++.-.-+ ..+.+..+.++.|-
T Consensus 8 ti~diA~~agVS~~TVSr~Ln~~------~~vs~~tr---------~rV~~~a~----~lgY~pn~~a~~l~~~~~~~Ig 68 (333)
T 3jvd_A 8 SLKEVAELAGVGYATASRALSGK------GYVSPQTR---------EKVQAAAK----ELNYVPNQLAKALREHRSALVG 68 (333)
T ss_dssp ---------------------------------------------------------------------------CCEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC------CCCCHHHH---------HHHHHHHH----HHCCCcCHHHHHhhcCCCCEEE
Confidence 77889999999999999999731 11111111 11111111 1111111 11112222333444
Q ss_pred EEecccchhhhhHHHHHHHHHhCC--CcEEEEEeCCh----hHHHHHHHcCCeeEEEEc
Q psy3760 97 IATTHTQARYALPKIIKEFTIQFP--KVKLSLLQGNP----KQITEMIRNDQADIAIVT 149 (306)
Q Consensus 97 I~~~~~~~~~~l~~~l~~~~~~~p--~~~i~~~~~~~----~~~~~~l~~~~~Di~i~~ 149 (306)
+-++. +...++..++..+.+... +..+.+...+. .+.++.+.+.++|-.|+.
T Consensus 69 vi~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~ 126 (333)
T 3jvd_A 69 VIVPD-LSNEYYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHV 126 (333)
T ss_dssp EEESC-SSSHHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred EEeCC-CcChHHHHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEc
Confidence 43433 344555555555543322 56666655432 235667778889999885
No 372
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.03 E-value=1.7 Score=33.77 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 3 ~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
-+.-++|...++. .|....|+.||+|.+||..++.+.-+.|+.
T Consensus 200 ~~erevl~L~~~G-~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 200 EREKEILRCIRKG-LSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3455666666655 599999999999999999999999999976
No 373
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=84.83 E-value=13 Score=29.30 Aligned_cols=194 Identities=13% Similarity=0.063 Sum_probs=102.4
Q ss_pred EEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHH--c--CCeeEEEEccccC-----------CC----
Q psy3760 95 LTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIR--N--DQADIAIVTEILS-----------PS---- 155 (306)
Q Consensus 95 l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~--~--~~~Di~i~~~~~~-----------~~---- 155 (306)
|++-.... ...+..++..|.+ +|+++|++...++.++...|. . +..|+.+...... +-
T Consensus 2 l~v~~~~~--~~~~~~~~~~F~~-~~gi~V~~~~~~~~~~~~kl~~~~~~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~ 78 (309)
T 1nnf_A 2 ITVYNGQQ--KEAATAVAKAFEQ-ETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQT 78 (309)
T ss_dssp EEEEECSC--HHHHHHHHHHHHH-HSCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESCGGGHHHHHHTTCBCCCCHHH
T ss_pred eEEEeCCC--HHHHHHHHHHHHh-CCCcEEEEEeCChHHHHHHHHHhcCCCCCCEEEecchhHHHHHHHCCCcccCCHHH
Confidence 45544433 2477889999985 699999998888888888884 2 4689987642100 00
Q ss_pred -----CCc-------eeeccccceEEEEecCCCCCCCCCCcChhhhcCCCe---EeecCCCCcHHHHH------------
Q psy3760 156 -----DKL-------ISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPL---ITYDLSFSGRIKLD------------ 208 (306)
Q Consensus 156 -----~~~-------~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~---i~~~~~~~~~~~~~------------ 208 (306)
+.+ ...++.....+++.+++..-....+-+++||.+..+ +...........+.
T Consensus 79 ~~~~~~~~~~~~~~g~~~P~~~~~~~l~YNk~~~~~~~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~a 158 (309)
T 1nnf_A 79 IQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVA 158 (309)
T ss_dssp HHTTCCTTCCCCTTSCCEEEEEEEEEEEEETTTCCGGGSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHCHHHH
T ss_pred hhhcchhhcccCCCCeEEEeeeeEEEEEEehhhccccCCCCCHHHHhchhhcCeEeecCCCchHHHHHHHHHHhcChHHH
Confidence 001 123445556678888775322234568998876221 22222211111111
Q ss_pred -HHHHhCCCceeEEEEecCHHHHHHHHHhc-cceeeeecceeccc-c-----cCCceee-ecCC--CCccceEEEEEeCC
Q psy3760 209 -REFSLQKLTPYIVLETINSDIIKTYVELR-MGIGIIASIAFDSN-R-----DKNLRSI-SASH--LFGTTISRVIIKQG 277 (306)
Q Consensus 209 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~g-~gi~~~p~~~~~~~-~-----~~~l~~~-~~~~--~~~~~~~~l~~~~~ 277 (306)
+++... ..+.. ...+.....+++.+| .++++...+..... . ...+... |.+. ........+...++
T Consensus 159 ~~~l~~l--~~~~~-~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~i~~~ 235 (309)
T 1nnf_A 159 LNWLKGL--KENGK-LYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKA 235 (309)
T ss_dssp HHHHHHH--HHHEE-ECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHHCGGGCSEEEECCCTTCGGGCEEEEEEEEBTT
T ss_pred HHHHHHH--HHhCC-CCCCCchHHHHHhcCCccEEEccHHHHHHHHhcccCCCCceEEeCCCCCCCceeeccccEEEEcC
Confidence 111111 11222 224556777888888 44445444333221 1 1234432 2221 11222334555666
Q ss_pred ccccHHHHHHHHHHhHH
Q psy3760 278 TYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 278 ~~~~~~~~~~~~~l~~~ 294 (306)
.....++++|++++.+.
T Consensus 236 s~~~~aA~~fi~~l~s~ 252 (309)
T 1nnf_A 236 SKNQAEAQKFVDFLASK 252 (309)
T ss_dssp CSCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHhCH
Confidence 66678899999999653
No 374
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=84.75 E-value=7.8 Score=29.15 Aligned_cols=56 Identities=9% Similarity=0.044 Sum_probs=43.3
Q ss_pred cEEEEecccchhhhhHHHHHHHHHh-CCCcEEEEEeCChhHHHHHHHcCCeeEEEEc
Q psy3760 94 NLTIATTHTQARYALPKIIKEFTIQ-FPKVKLSLLQGNPKQITEMIRNDQADIAIVT 149 (306)
Q Consensus 94 ~l~I~~~~~~~~~~l~~~l~~~~~~-~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~ 149 (306)
.++|.++..-...-+..++.+-.++ .|++++++...+.....+.+.+|+.|+++..
T Consensus 100 ~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~v~i~~~~~~~~~~~~~~g~~d~~~~~ 156 (229)
T 3o6p_A 100 TMDILSSDADSSKKTVEFVQGSIQDALDGVKVTVSPVPFSVRLDRSNKGDFDAVIGG 156 (229)
T ss_dssp EEEEEEECSHHHHHHHHHHHHHHHHHSTTEEEEEEEECHHHHHHHHHHTCCSEEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEecCHHHHHHHhhcCCceEEEec
Confidence 6777775443344566677766666 6899999999998899999999999999864
No 375
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=83.96 E-value=1.6 Score=26.59 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.3
Q ss_pred HHhcCCHHHHHHHhCCCchHHHHHHH
Q psy3760 13 VRQNFNLTEAAKALYTSQPGVSKAII 38 (306)
Q Consensus 13 ~~~~~s~~~aA~~l~isq~~~s~~i~ 38 (306)
.+.| |-...|+.+|+|+++||+..+
T Consensus 9 ~~~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 9 NKLG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHHS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred HHhC-CHHHHHHHHCCCHHHHHHHHH
Confidence 4567 899999999999999998643
No 376
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=83.85 E-value=1.3 Score=25.59 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.5
Q ss_pred CHHHHHHHh-----CCCchHHHHHHHHH
Q psy3760 18 NLTEAAKAL-----YTSQPGVSKAIIEL 40 (306)
Q Consensus 18 s~~~aA~~l-----~isq~~~s~~i~~L 40 (306)
|...-++.| ++|++||.|.|+++
T Consensus 21 t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 21 TQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 677889999 99999999999944
No 377
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=83.72 E-value=3.5 Score=31.10 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=37.9
Q ss_pred EEEEecccchhhhhHHHHHHHHHhCCCcEEEEE--eCChhHHHHHHHcCCeeEEEEc
Q psy3760 95 LTIATTHTQARYALPKIIKEFTIQFPKVKLSLL--QGNPKQITEMIRNDQADIAIVT 149 (306)
Q Consensus 95 l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~--~~~~~~~~~~l~~~~~Di~i~~ 149 (306)
.+||+..+. .....+..+...+|...+.+. ..+..+.++.|.+|++|.++..
T Consensus 116 ~~i~~~~g~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~ 169 (246)
T 4eq9_A 116 KSTEVVQAT---TSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFD 169 (246)
T ss_dssp CEEEECTTC---HHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEE
T ss_pred CEEEEecCc---cHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEec
Confidence 477876543 235566677778886555554 3477899999999999999985
No 378
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=83.71 E-value=12 Score=30.26 Aligned_cols=116 Identities=12% Similarity=0.033 Sum_probs=65.1
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEcccc----C-CCCCce---eecc
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEIL----S-PSDKLI---SIPC 163 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~----~-~~~~~~---~~~l 163 (306)
..+|+++.......-...+...+.. -+..+++... +..+.++.|.+|++|+++..... . ...++. ....
T Consensus 5 ~~vrwCv~s~~E~~KC~~l~~~~~~--~~~~veCv~~~s~~~Ci~aI~~g~aD~~~ld~~~~~~A~~~~~~l~pi~~e~~ 82 (332)
T 1iej_A 5 SVIRWCTISSPEEKKCNNLRDLTQQ--ERISLTCVQKATYLDCIKAIANNEADAITLDGGQVFEAGLAPYKLKPIAAEVY 82 (332)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTTT--SSEEEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHTSTTTCCEEEEEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHHHHcCCCcEEEeCccceeEecccccCCEEEEEEEe
Confidence 3589998875444333433333311 2445665553 67789999999999999984110 0 111221 1111
Q ss_pred c-------cceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCC-cHHHHHHHHHhCCC
Q psy3760 164 Y-------QWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFS-GRIKLDREFSLQKL 216 (306)
Q Consensus 164 ~-------~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~-~~~~~~~~~~~~~~ 216 (306)
. ...-++|+.++.+ ++++||.+...-....+.. -+..-...+.+.|+
T Consensus 83 ~~~~~~~~~Y~aVaVVkkdS~------isl~dLkGKksChtg~~stsGw~~Pi~~L~~~g~ 137 (332)
T 1iej_A 83 EHTEGSTTSYYAVAVVKKGTE------FTVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGA 137 (332)
T ss_dssp ECSSSEESEEEEEEEEETTCC------CCGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTS
T ss_pred cCCCCCCCceEEEEEEeCCCC------CCHHHHCCCceEcCCCCCccchHHHHHHHHHcCC
Confidence 1 1123677777753 5899999988777666543 12233344445554
No 379
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=83.64 E-value=4.5 Score=32.76 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=60.4
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeC-ChhHHHHHHHcCCeeEEEEccccC-----CCCCcee--eccc
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-NPKQITEMIRNDQADIAIVTEILS-----PSDKLIS--IPCY 164 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~-~~~~~~~~l~~~~~Di~i~~~~~~-----~~~~~~~--~~l~ 164 (306)
..+|+++.......-...+...+.. .++..+++... +..+.++.|.+|++|+++...... ...++.. .+.+
T Consensus 5 ~~vrwCv~s~~e~~KC~~l~~~~~~-~~~~~vecv~~~~~~~ci~aI~~g~AD~~~ld~~~~~~A~~~~~~l~pi~~e~~ 83 (334)
T 1h45_A 5 RSVQWCAVSQPEATKCFQWQRNMRR-VRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVY 83 (334)
T ss_dssp TSEEEEESSHHHHHHHHHHHHHHHH-TTCCCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHhh-cCCCceEEEEcCCHHHHHHHHHcCCCCEEEeCccceEEeecCccCCEEEEEEee
Confidence 5699999876554455555555533 33445555543 667899999999999999841100 1122221 1111
Q ss_pred c--------ceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCC
Q psy3760 165 Q--------WEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLS 200 (306)
Q Consensus 165 ~--------~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~ 200 (306)
. ..-++|+.++.+ ++++||.+...-....+
T Consensus 84 ~~~~~~~~~Y~avaVVkk~s~------isl~dLkGKksch~~~~ 121 (334)
T 1h45_A 84 GTERQPRTHYYAVAVVKKGGS------FQLNELQGLKSCHTGLR 121 (334)
T ss_dssp ECSSSEESEEEEEEEEETTCC------CCGGGCTTCEEEESCTT
T ss_pred cCCCCCCCceEEEEEEeCCCC------CCHHHHCCCceecCCCC
Confidence 1 122667777763 58999998776665544
No 380
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=83.53 E-value=1.2 Score=29.25 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=25.9
Q ss_pred cCCHHHHHHHhCCCchHHHHHHHHHHHHcC
Q psy3760 16 NFNLTEAAKALYTSQPGVSKAIIELEEELS 45 (306)
Q Consensus 16 ~~s~~~aA~~l~isq~~~s~~i~~LE~~lg 45 (306)
. |+..+|+.+|||+++|.+.+++.+..-+
T Consensus 31 ~-s~~~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 31 A-TICSIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp H-HHHHHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred c-cHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 5 8999999999999999999999877543
No 381
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=83.53 E-value=2.2 Score=27.57 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHH
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEE 42 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~ 42 (306)
.+.+...+.+.+.|+.+||+..+||.++|.+..+..++
T Consensus 39 K~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 39 KIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45677778877778999999999999999999888764
No 382
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=83.52 E-value=1.3 Score=33.40 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 3 ~~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
-+..+++..+++.. |-..-|+.|++|..|+..++++|-+.||+
T Consensus 162 ~rE~~vL~~l~~g~-s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 162 KREQQIIKLLGSGA-SNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp HHHHHHHHHHTTTC-CHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 35566777777765 99999999999999999999999999986
No 383
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=83.20 E-value=3.7 Score=31.40 Aligned_cols=44 Identities=20% Similarity=0.092 Sum_probs=32.8
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQ 64 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~ 64 (306)
|...-|+.+|+|.++|...|+.||.+ |.-- .+.++|. ..++...
T Consensus 51 ~e~~La~~lgVSr~~VReAL~~L~~~-Glv~-~~~~~G~-~V~~~~~ 94 (237)
T 3c7j_A 51 RQQELATLFGVSRMPVREALRQLEAQ-SLLR-VETHKGA-VVAPLIT 94 (237)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT-TSEE-EETTTEE-EECCCHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC-CCEE-EeCCCce-EEecCCH
Confidence 56778999999999999999999876 5422 3336676 4666554
No 384
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=83.11 E-value=2.2 Score=32.44 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=37.4
Q ss_pred EEEEecccchhh-hhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEc
Q psy3760 95 LTIATTHTQARY-ALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVT 149 (306)
Q Consensus 95 l~I~~~~~~~~~-~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~ 149 (306)
-|||+..+.... ++.. .. +++..++..+.+..+++..|.+|++|.++..
T Consensus 113 krVGvd~gS~dq~~lt~----~~--~~g~~Ve~ve~~y~~~i~~L~~G~IDA~Iwn 162 (231)
T 2ozz_A 113 KRVGLDSRSADQKIMTD----VF--FGDSDVERVDLSYHESLQRIVKGDVDAVIWN 162 (231)
T ss_dssp CEEEECTTCHHHHHHHH----HH--HTTSCCEEEECCHHHHHHHHHHTSCCEEEEE
T ss_pred EEEEecCCChhHHHHHh----hh--cCCCeEEEEECCHHHHHHHHHcCCccEEEEc
Confidence 599998764333 3333 22 2688888998899999999999999999993
No 385
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=83.06 E-value=0.75 Score=37.26 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=33.0
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCcEE
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKK-IGKEFSAYDTGNLT 96 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~-~~~~~~~~~~~~l~ 96 (306)
|+...|+..|+|.+||||.|..- .++ . -+.-++..+.++ ++.-.-+ ..+.+..+.++.|-
T Consensus 5 ti~diA~~agVS~~TVSrvln~~-------------~~v-s-~~tr~rV~~~a~----~lgY~pn~~a~~l~~~~~~~Ig 65 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSGN-------------GYV-S-QETKDRVFQAVE----ESGYRPNLLARNLSAKSTQTLG 65 (338)
T ss_dssp --------------------------------------------------------------------------CCSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHCCC-------------CCC-C-HHHHHHHHHHHH----HHCCCcCHHHHHhhhCCCCEEE
Confidence 67889999999999999999631 111 1 011111111111 1111111 11222233344444
Q ss_pred EEeccc-chhhhhHHHHHHHHHhC--CCcEEEEEeCCh--h---HHHHHHHcCCeeEEEEc
Q psy3760 97 IATTHT-QARYALPKIIKEFTIQF--PKVKLSLLQGNP--K---QITEMIRNDQADIAIVT 149 (306)
Q Consensus 97 I~~~~~-~~~~~l~~~l~~~~~~~--p~~~i~~~~~~~--~---~~~~~l~~~~~Di~i~~ 149 (306)
+-++.. +...++..++..+.+.. -++.+.+..... . +.++.+.+.++|-.|+.
T Consensus 66 vi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 126 (338)
T 3dbi_A 66 LVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIY 126 (338)
T ss_dssp EEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred EEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 444431 34456666665554332 256666655322 1 25677888899999885
No 386
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=83.03 E-value=0.92 Score=30.26 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHhCCCchHHHHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKAIIE 39 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~i~~ 39 (306)
-+ |...||+.|+++.++|+++++.
T Consensus 83 f~-S~~eAar~lg~s~~ti~~~~~~ 106 (116)
T 1i3j_A 83 FD-CAADAARHFKISSGLVTYRVKS 106 (116)
T ss_dssp ES-SHHHHHHHHTCCHHHHHHHHHC
T ss_pred Ec-CHHHHHHHHCCCchhHHHHHhc
Confidence 56 9999999999999999999964
No 387
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=82.71 E-value=2.4 Score=27.03 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHhcCCHHHHHHHhCCCchHHHHHHH
Q psy3760 11 EAVRQNFNLTEAAKALYTSQPGVSKAII 38 (306)
Q Consensus 11 ~v~~~~~s~~~aA~~l~isq~~~s~~i~ 38 (306)
.+.+.+-++...|+.+|+|.+|||+.+.
T Consensus 15 ~l~~~~~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 15 YIVETKKTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHCCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 3334444899999999999999999884
No 388
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=82.51 E-value=17 Score=29.00 Aligned_cols=199 Identities=14% Similarity=0.029 Sum_probs=107.8
Q ss_pred CCCcEEEEecccchhh--hhHHHHHHHHHhCCCcEEEEEeCC-hhHHHHHHHc----CCeeEEEEcc-c----------c
Q psy3760 91 DTGNLTIATTHTQARY--ALPKIIKEFTIQFPKVKLSLLQGN-PKQITEMIRN----DQADIAIVTE-I----------L 152 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~--~l~~~l~~~~~~~p~~~i~~~~~~-~~~~~~~l~~----~~~Di~i~~~-~----------~ 152 (306)
..++|+|....+.... .+..++..|.+++ +++|++...+ ..++.+.|.. +..|+.+... . .
T Consensus 21 ~~~~L~v~~~~~~~~~~~~~~~~~~~Fe~~~-gi~V~~~~~~~~~~~~~kl~~~~~~~~pDv~~~~~~~~~~~~~~~g~l 99 (330)
T 2qry_A 21 MKPVLTVYTYDSFAADWGPGPVVKKAFEADC-NCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLF 99 (330)
T ss_dssp -CCEEEEEECHHHHSTTSSHHHHHHHHHTTS-CSEEEEEECSCHHHHHHHHHHHGGGCCCSEEEEEEGGGHHHHHHHTCB
T ss_pred CCCeEEEEeccccccchhhhHHHHHHHHHHH-CCEEEEEeCCCHHHHHHHHHhccCCCCCCEEEEcChHHHHHHHHCCce
Confidence 4568999886543333 3688999999998 9999998865 6677666643 3689988321 1 0
Q ss_pred CCC--C-----------CceeeccccceEEEEecCCCCCCCCCCcChhhhcCCC----eEeecCCCC-cH-HHH------
Q psy3760 153 SPS--D-----------KLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYP----LITYDLSFS-GR-IKL------ 207 (306)
Q Consensus 153 ~~~--~-----------~~~~~~l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~----~i~~~~~~~-~~-~~~------ 207 (306)
.+- . +....|+.....+++.+++-. ...+-+++||.+.. +....+... .. ..+
T Consensus 100 ~~l~~~~~~~~~~~~~~~~y~vP~~~~~~~l~YNkd~~--~~~P~Tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (330)
T 2qry_A 100 AKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKL--KNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKV 177 (330)
T ss_dssp CCCCCCGGGCCCTTCCCCSSCEEEEEEEEEEEEETTTC--SSCCSSHHHHHHCSSCCCEEEECTTTCHHHHHHHHHHHHH
T ss_pred eccccccccccCCHHHhcCeEEEEeccceEEEEehhhc--cCCCCCHHHHHhHHhcCeeEeeCCCCCchHHHHHHHHHHh
Confidence 010 0 011345556677888888753 23567999986532 233222211 11 111
Q ss_pred -----HHHHHhCCCceeEEEEecCHHHHHHHHHhccce-eeeeccee--ccc--ccCCceeeecCCCCccceEEEEEeCC
Q psy3760 208 -----DREFSLQKLTPYIVLETINSDIIKTYVELRMGI-GIIASIAF--DSN--RDKNLRSISASHLFGTTISRVIIKQG 277 (306)
Q Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi-~~~p~~~~--~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~ 277 (306)
.+++... ..+......+.....+++.+|... ++...... ... ...++...++++.......++...++
T Consensus 178 ~g~~a~~~~~~l--~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~i~~~ 255 (330)
T 2qry_A 178 YGDDAPQAWQKL--AKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAA 255 (330)
T ss_dssp HGGGHHHHHHHH--HTTEEEEESSHHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTCEEEEEEEEEEBTT
T ss_pred hChHHHHHHHHH--HhcCceeccChHHHHHHHhCCCEEEEEecccHHHHHhhhccCCceeEEeCCCCCeeeeeEEEEECC
Confidence 1111111 123332344566677788888443 33322211 111 12344444333222222334555677
Q ss_pred ccccHHHHHHHHHHhHH
Q psy3760 278 TYLRSYVYSFIKLLSPK 294 (306)
Q Consensus 278 ~~~~~~~~~~~~~l~~~ 294 (306)
.....++.+|++++.+.
T Consensus 256 s~~~~~A~~fi~fl~s~ 272 (330)
T 2qry_A 256 SKQPELAQKFLQFMVSP 272 (330)
T ss_dssp CSCHHHHHHHHHHHTSH
T ss_pred CCCHHHHHHHHHHHcCH
Confidence 77778899999999653
No 389
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=82.41 E-value=1.8 Score=29.89 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHcCceeEEecC-CCccccCHhHHHHHHHH
Q psy3760 30 QPGVSKAIIELEEELSIDIFIRHG-KRIRGLTKPGQAILRSI 70 (306)
Q Consensus 30 q~~~s~~i~~LE~~lg~~Lf~R~~-~~~~~lT~~G~~l~~~a 70 (306)
-+-+-+.+++||+ ..|+++.. +|- .+|+.|+.++..+
T Consensus 98 g~iiR~~LQqLE~---~g~vek~~~~GR-~lT~~G~~~LD~i 135 (144)
T 3u5c_T 98 GSINRKVLQALEK---IGIVEISPKGGR-RISENGQRDLDRI 135 (144)
T ss_dssp HHHHHHHHHHHHH---TTSEECCSSSSC-EECHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH---CCCeeecCCCCc-EECHhHHHHHHHH
Confidence 3567788999997 46778774 577 6999999988764
No 390
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=82.04 E-value=1.1 Score=36.13 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred CHHHHHHHhCCCchHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~L 40 (306)
|+...|+..|+|++||||.|...
T Consensus 7 ti~diA~~agVS~~TVSrvln~~ 29 (332)
T 2o20_A 7 TIYDVARVAGVSMATVSRVVNGN 29 (332)
T ss_dssp -----------------------
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC
Confidence 67889999999999999999864
No 391
>3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein, hydrogen ATOM, phosphate binding protein; 0.88A {Pseudomonas fluorescens SBW25} SCOP: c.94.1.1 PDB: 3g62_A 4f1v_A 4f18_A 4f1u_A 4f19_A 2q9t_A 2v3q_A 2cap_A
Probab=82.03 E-value=1.7 Score=35.96 Aligned_cols=138 Identities=13% Similarity=0.007 Sum_probs=90.1
Q ss_pred HHHHHHHHhCCCcEEEEEeCChhHHHHHHHc------------CCeeEEEEccccCCC-------------CCceeeccc
Q psy3760 110 KIIKEFTIQFPKVKLSLLQGNPKQITEMIRN------------DQADIAIVTEILSPS-------------DKLISIPCY 164 (306)
Q Consensus 110 ~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~------------~~~Di~i~~~~~~~~-------------~~~~~~~l~ 164 (306)
+++..+. .+|++.+++...++..-+..+.+ |.+||+.+..+..+. .++...++.
T Consensus 13 pl~~~~~-~~~~v~i~y~~~GSG~G~~~f~~g~~~~~~~~v~~g~vd~~~ssr~l~~~E~~~~~~~~~~~~~~~~~~pva 91 (381)
T 3g63_A 13 ALYQTSG-VLTAGFAQYIGVGSGNGKAAFLNNDYTKFQAGVTNKNVHWAGSDSKLSATELSTYASAKQPTWGKLIQVPSV 91 (381)
T ss_dssp HHHTSTT-TSCTTBCCCEECCHHHHHHHHHHTCGGGTSTTCCSSCCCEEEESSCCCHHHHHHHHHHTHHHHCCEEEEEEE
T ss_pred HHHHHHH-HccCcEEEEecCCcHHHHHHHHhcccccccccccCCCceEEEcCCCCCHHHHHHHhhhhcccCCCcEEeeEE
Confidence 3444443 48999999999999988888765 799999997553321 246677788
Q ss_pred cceEEEEecCCCC-CCC-----------CCCcChhhhc----CCC--eEeecCCCCcHHHHHHHHHhC-C-----C----
Q psy3760 165 QWEYVIIVPLDHP-LLL-----------LNSISLKEIS----NYP--LITYDLSFSGRIKLDREFSLQ-K-----L---- 216 (306)
Q Consensus 165 ~~~~~~v~~~~~~-l~~-----------~~~i~~~dl~----~~~--~i~~~~~~~~~~~~~~~~~~~-~-----~---- 216 (306)
-+.+++++++... ... .+..+|.|+. +.| .+..+.+++.+..+.+.+... . +
T Consensus 92 ~d~IavvvN~~~~~~~~Lt~~qL~~If~GkIt~W~dv~~~~pd~~I~vv~R~~~SGT~~~F~~~l~~~~~~~~~~~~~~~ 171 (381)
T 3g63_A 92 GTSVAIPFNKSGSAAVNLSVQELCGVFSGRINTWDGISGSGRTGPIVVVYRSESSGTTELFTRFLNAKCNAETGNFAVTT 171 (381)
T ss_dssp EEECBCBEECCCSSCCEECHHHHHHHHHTSCCBGGGSTTCCCCSBCEEEEESSCCHHHHHHHHHHHHHCCSSSSCBCCCS
T ss_pred EeeEEEEEcCCCCcccCCCHHHHHHHhcCCCccccccCCCCCCCeEEEEeCCCCCcHHHHHHHHHhhhCccccccccccc
Confidence 8888888886542 111 3445688874 244 344455666778888776432 1 0
Q ss_pred --c-------eeEEEEecCHHHHHHHHHhc-cceeeeeccee
Q psy3760 217 --T-------PYIVLETINSDIIKTYVELR-MGIGIIASIAF 248 (306)
Q Consensus 217 --~-------~~~~~~~~~~~~~~~~v~~g-~gi~~~p~~~~ 248 (306)
. |.......+...+.+.|.+. .+|+++....+
T Consensus 172 ~~g~~~~~~~P~~~~~~~gn~gV~~~V~~tpgAIGYv~~~y~ 213 (381)
T 3g63_A 172 TFGTSFSGGLPAGAVAATGSQGVMTALAAGDGRITYMSPDFA 213 (381)
T ss_dssp CGGGTBTTCCCTTCEEECHHHHHHHHHHTSTTEECCBCTTTT
T ss_pred cccccccccCCccceecCCcHHHHHHHhcCCCceEEeehHHh
Confidence 0 10025677888899999876 77888765443
No 392
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=81.31 E-value=1.3 Score=30.42 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=29.0
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI 56 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~ 56 (306)
|...-|+.+++|.++|.++++.||.+ |. +..+.++|.
T Consensus 40 ser~La~~~gVSr~tVReAl~~L~~e-Gl-v~~~~g~G~ 76 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQELERQ-EV-IITVKGKGT 76 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-TS-EEEETTTEE
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHC-Cc-EEEEcCcEE
Confidence 56788999999999999999999876 33 334455665
No 393
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=81.27 E-value=1.6 Score=30.25 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=28.8
Q ss_pred CchHHHHHHHHHHHHcCceeEEecC-CCccccCHhHHHHHHHH
Q psy3760 29 SQPGVSKAIIELEEELSIDIFIRHG-KRIRGLTKPGQAILRSI 70 (306)
Q Consensus 29 sq~~~s~~i~~LE~~lg~~Lf~R~~-~~~~~lT~~G~~l~~~a 70 (306)
|-+-+-+.+++||+ ..|+++.. +|- .+|+.|+.++..+
T Consensus 99 sg~iiR~~LQqLE~---~g~Vek~~~gGR-~lT~~G~~~LD~i 137 (146)
T 3iz6_S 99 SGAISRNILQQLQK---MGIIDVDPKGGR-LITSQGRRDLDQV 137 (146)
T ss_dssp CHHHHHHHHHHHHH---HTSEEEETTTEE-EECHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH---CCCeEecCCCCc-EECHhHHHHHHHH
Confidence 34567788999997 46777775 576 6999999988764
No 394
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=81.21 E-value=4 Score=26.47 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcC
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELS 45 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg 45 (306)
+|+-.+++---++.|+.+-++.+|...+||..+++++|+.+.
T Consensus 38 RqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 38 RQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455555555556679999999999999999999999999874
No 395
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=80.64 E-value=1.9 Score=29.32 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCHH-HHHHHhCCCchHHHHHHHHHHHHc
Q psy3760 7 RFVREAVRQNFNLT-EAAKALYTSQPGVSKAIIELEEEL 44 (306)
Q Consensus 7 ~~f~~v~~~~~s~~-~aA~~l~isq~~~s~~i~~LE~~l 44 (306)
++...+.+.|.+.. .+|+.+||++++|++.++.-+...
T Consensus 15 ~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 15 RIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 33333335552333 799999999999999999877643
No 396
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=80.62 E-value=1.3 Score=31.08 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=25.0
Q ss_pred HHHHHhcCCHHHHHHHh-----CCCchHHHHHHHHHHH
Q psy3760 10 REAVRQNFNLTEAAKAL-----YTSQPGVSKAIIELEE 42 (306)
Q Consensus 10 ~~v~~~~~s~~~aA~~l-----~isq~~~s~~i~~LE~ 42 (306)
+.-..-. |...=++.| ++||+|+||-|++|+.
T Consensus 14 i~~~~~~-tq~eL~~~L~~~G~~VtqaTisRDL~eL~~ 50 (149)
T 1b4a_A 14 IMSNDIE-TQDELVDRLREAGFNVTQATVSRDIKEMQL 50 (149)
T ss_dssp HHHSCCC-SHHHHHHHHHHTTCCCCHHHHHHHHHHTTC
T ss_pred HHHCCCc-cHHHHHHHHHHcCCCcCHHHHHHHHHHcCC
Confidence 3333445 777888999 9999999999999854
No 397
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=80.61 E-value=2.7 Score=30.98 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
+..+++..+++.. |-..-|+.|++|..|+..+++++-+.||..
T Consensus 146 rE~~vl~~l~~g~-s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 146 REQQVLQLTIRGL-MNKQIAGELGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp HHHHHHHHHTTTC-CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCC-cHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 4456666677666 999999999999999999999999999863
No 398
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=80.45 E-value=1.2 Score=33.91 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 19 LTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 19 ~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
-..-|..+|+|+.++||.+++|+++ | + ..+++.+ .+.+
T Consensus 181 ~~~iA~~lg~sr~tvsR~l~~L~~~-g--i-~~~~~~i-~I~d 218 (237)
T 3fx3_A 181 KMLIAGRLGMKPESLSRAFSRLKAA-G--V-TVKRNHA-EIED 218 (237)
T ss_dssp THHHHHHTTCCHHHHHHHHHHHGGG-T--E-ECCTTEE-EESC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-C--e-EeeCCEE-EEcC
Confidence 4578999999999999999999987 6 3 4556666 4543
No 399
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=80.35 E-value=2.2 Score=30.63 Aligned_cols=24 Identities=46% Similarity=0.347 Sum_probs=20.1
Q ss_pred HHhcCCHHHHHHHhCCCchHHHHH
Q psy3760 13 VRQNFNLTEAAKALYTSQPGVSKA 36 (306)
Q Consensus 13 ~~~~~s~~~aA~~l~isq~~~s~~ 36 (306)
.+.|.|-.++|+.||+|++++|+-
T Consensus 100 ~~~glTQ~elA~~LGvsr~tis~y 123 (170)
T 2auw_A 100 HRNNLSLTTAAEALGISRRMVSYY 123 (170)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHH
Confidence 445668899999999999999863
No 400
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=79.94 E-value=1.3 Score=37.10 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=29.6
Q ss_pred HHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 6 l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
-.++..+.+.+ .|-+.-|+.+++|++|+|+.+++|+++
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34566666554 256667999999999999999999884
No 401
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=79.62 E-value=3.8 Score=30.36 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=24.0
Q ss_pred CHHHHHHHhCCC-chHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTS-QPGVSKAIIELEEE 43 (306)
Q Consensus 18 s~~~aA~~l~is-q~~~s~~i~~LE~~ 43 (306)
|...-|+.+|+| ++|+++.++.|++.
T Consensus 27 s~~elA~~lgiss~~tv~~~~~~l~~~ 53 (202)
T 1jhf_A 27 TRAEIAQRLGFRSPNAAEEHLKALARK 53 (202)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 789999999999 99999999999874
No 402
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=79.45 E-value=1.7 Score=27.41 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=20.7
Q ss_pred HHhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 13 VRQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 13 ~~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
.+.|.|-.+.|+.+|+|++++|+..
T Consensus 34 ~~~glTq~eLA~~~GiS~~tis~iE 58 (88)
T 3t76_A 34 IDRDMKKGELREAVGVSKSTFAKLG 58 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4556689999999999999998653
No 403
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=79.43 E-value=13 Score=28.02 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=47.9
Q ss_pred EEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEcccc-------CCCCCce--eecccc
Q psy3760 95 LTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEIL-------SPSDKLI--SIPCYQ 165 (306)
Q Consensus 95 l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~-------~~~~~~~--~~~l~~ 165 (306)
.+||+...... -..+.+.+|+.++.... +..+.++.|.+|++|+++..... .....+. ..++..
T Consensus 131 ~~i~v~~g~~~------~~~l~~~~~~~~~~~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (249)
T 4f3p_A 131 KVIAAKTGTAT------IDWIKAHLKPKEIRQFP-NIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSG 203 (249)
T ss_dssp SEEEEETTSHH------HHHHHHHCCCSEEEEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEE
T ss_pred CEEEEeCCChH------HHHHHhcCCCceEEEcC-CHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCC
Confidence 46777654332 12344556888776654 56789999999999999975210 1112232 345566
Q ss_pred ceEEEEecCCCC
Q psy3760 166 WEYVIIVPLDHP 177 (306)
Q Consensus 166 ~~~~~v~~~~~~ 177 (306)
..+.+++++++|
T Consensus 204 ~~~~~~~~k~~~ 215 (249)
T 4f3p_A 204 DKYGIGFPKGSP 215 (249)
T ss_dssp EEEEEEEETTCT
T ss_pred ccEEEEEcCCch
Confidence 677888888765
No 404
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=79.30 E-value=1.7 Score=34.76 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=59.9
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC--CCCCceeec------
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS--PSDKLISIP------ 162 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~--~~~~~~~~~------ 162 (306)
....+|||........ ++...+. ...+++ +.....+.+.+.+.+|++|++.++.... ....+...+
T Consensus 13 ~~~~lriG~~~~~n~~---pl~~~l~-~~~~~~--~~~~~p~~L~~~l~~G~lDi~~vs~~~~~~~~~~~~~l~~~~i~a 86 (301)
T 2i6e_A 13 PQHPYRAGWIHFTNVA---PILDSLE-LPPGVT--AITGVPTQMNAALLSGEVDIANVSAVEFIRHADTLAALPDFSVAV 86 (301)
T ss_dssp ---CCCCEECCCGGGH---HHHTTCC-CCTTCC--CEECCHHHHHHHHHHSSCSEEEEEHHHHHHTTTTEEEEEEEEEEE
T ss_pred CCCCeEEEeecccccH---HHHHHHh-cccCeE--EEECCHHHHHHHHHCCCCCEEEeCHHHHHhhhCcEEEecCeEEEe
Confidence 3557999998875432 2222222 223444 4667778999999999999998752211 111122111
Q ss_pred cccceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHH-HHhCCCceeE
Q psy3760 163 CYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDRE-FSLQKLTPYI 220 (306)
Q Consensus 163 l~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 220 (306)
.+...-++++++ .++++| .-|..+.+......+.+. +++.|+.+..
T Consensus 87 ~g~v~s~~lv~~---------~~i~~L---k~Va~~~~s~t~~~Ll~~lL~~~Gl~~~~ 133 (301)
T 2i6e_A 87 LGPVYSVNLFHT---------CPLPEL---RRVALTSQSAMSVALLEVLLRQKGLSPVL 133 (301)
T ss_dssp SSCCSSEEEEES---------SCGGGC---CEEEECTTCHHHHHHHHHHHHHTTCCCEE
T ss_pred eCCcceEEEEeC---------CCHHHc---CEEEECCCChHHHHHHHHHHHHCCCCcEE
Confidence 111111112221 134566 455666555666666665 8888998753
No 405
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=79.28 E-value=24 Score=28.69 Aligned_cols=187 Identities=7% Similarity=0.053 Sum_probs=101.3
Q ss_pred CCCcEEEEecccchhhhhHHH-HHHHHHhCCCcEEEEEeC--------------------ChhHHHHHHHcCCeeEEEEc
Q psy3760 91 DTGNLTIATTHTQARYALPKI-IKEFTIQFPKVKLSLLQG--------------------NPKQITEMIRNDQADIAIVT 149 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~-l~~~~~~~p~~~i~~~~~--------------------~~~~~~~~l~~~~~Di~i~~ 149 (306)
....|+||+-.+-...+=... ...+.+.||++.++++.. ...++.+.|.+|++|+++.+
T Consensus 20 ~~~~irIGTR~S~LAl~Qa~~V~~~L~~~~p~~~~eiv~i~T~GD~ild~pL~~iGgKGlFtkELe~ALl~g~iDiAVHS 99 (364)
T 3ecr_A 20 KMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHS 99 (364)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHHHHCTTSEEEEEEC-------------------CCHHHHHHHHHTTSCSEEEEE
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccCccccCCcHHHcCCceeeHHHHHHHHhcCCCCEEEEC
Confidence 346799999877555444444 466777899999887532 24567899999999999987
Q ss_pred cccC---CCCCcee--eccccceE-EEEecCCCCCCCCCCcChhhhcCCCeEeecCCCCcHHHHHHHHHhCCCceeEEEE
Q psy3760 150 EILS---PSDKLIS--IPCYQWEY-VIIVPLDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLE 223 (306)
Q Consensus 150 ~~~~---~~~~~~~--~~l~~~~~-~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (306)
...- .++++.. ++-..++. ++|.++++. ..++++|..-..|..+ +.|.. .++ ........++-.
T Consensus 100 lKDvPt~lp~gl~l~av~~ReDprDalV~~~~~~-----~~~l~~LP~Ga~VGTS---SlRR~-aQL-~~~rPdL~i~~l 169 (364)
T 3ecr_A 100 LKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFV-----GKTLETLPEKSVVGTS---SLRRA-AQL-QRKFPHLEFRSI 169 (364)
T ss_dssp GGGSCSSCCTTEEEEEECCCCCCCEEEEECTTCT-----TCCTTTSCTTCEEECC---CHHHH-HHH-HHHCTTSEEECC
T ss_pred cccCCCCCCCCcEEEEEcCCCCcceEEEEcCccC-----CCChhHCCCcCEEeCC---cHHHH-HHH-HHHCCCCEEEEC
Confidence 4322 2344432 22223333 333332221 2356666555555443 34332 222 223333455555
Q ss_pred ecCHHHHHHHHHhc---cceeeeecceeccc-ccCCc-eeeecCC---CCccceEEEEEeCCccccHHHHHHHHHH
Q psy3760 224 TINSDIIKTYVELR---MGIGIIASIAFDSN-RDKNL-RSISASH---LFGTTISRVIIKQGTYLRSYVYSFIKLL 291 (306)
Q Consensus 224 ~~~~~~~~~~v~~g---~gi~~~p~~~~~~~-~~~~l-~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~l 291 (306)
-.|+.+=+.-+..| +++-+.-..+ ... -...+ ..++.+. .+-+.-+.+-++.+ +..+..+++.|
T Consensus 170 RGNV~TRL~KL~~gg~~DAiILA~AGL-~RLgl~~~i~~~l~~~~~lPA~gQGaLaIe~R~~---D~~~~~ll~~l 241 (364)
T 3ecr_A 170 RGNLNTRLRKLDEQQEFSAIILATAGL-QRMGWHNRVGQILHPEECMYAVGQGALGVEVRAK---DQDILDLVGVL 241 (364)
T ss_dssp CSCHHHHHHHHHHSSSCSEEEEEHHHH-HHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETT---CHHHHHHHHTT
T ss_pred CCCHHHHHHHhhcCCCcCEEEehhhHH-hhcCCchheeEecChhhcCCccccceeEEEEecC---CHHHHHHHHHc
Confidence 78999988888874 3333322222 222 11122 2334332 12356777877775 34455555444
No 406
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=79.13 E-value=2.8 Score=30.58 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=31.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhCCCchHHHHHHHHH--HHHcCceeE
Q psy3760 6 FRFVREAVRQ--NFNLTEAAKALYTSQPGVSKAIIEL--EEELSIDIF 49 (306)
Q Consensus 6 l~~f~~v~~~--~~s~~~aA~~l~isq~~~s~~i~~L--E~~lg~~Lf 49 (306)
.+|...+... + +-++-|+.+|+|++.|||.|+.- =+++ +.+|
T Consensus 31 ~~y~r~L~~g~~~-~Q~~lA~~~giS~a~VSR~L~~A~LP~~l-v~~f 76 (189)
T 3mky_B 31 QRYASRLQNEFAG-NISALADAENISRKIITRCINTAKLPKSV-VALF 76 (189)
T ss_dssp HHHHHHHHTTTTT-CHHHHHHHHTSCHHHHHHHHHHHHSCHHH-HHTS
T ss_pred HHHHHHHhcCccc-CHHHHHHHHCCCHHHHHHHHHHhcCCHHH-HHHc
Confidence 4555566554 7 99999999999999999999753 3444 4555
No 407
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=78.85 E-value=7.4 Score=32.29 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=45.1
Q ss_pred CCCCcEEEEeccc-chhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHH----HHHcCC--eeEEEE
Q psy3760 90 YDTGNLTIATTHT-QARYALPKIIKEFTIQFPKVKLSLLQGNPKQITE----MIRNDQ--ADIAIV 148 (306)
Q Consensus 90 ~~~~~l~I~~~~~-~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~----~l~~~~--~Di~i~ 148 (306)
...++|++-.... .....+..++..|.++||+++|++...+.++..+ .+.+|+ .|+...
T Consensus 25 ~~~~~l~~w~~~~~~~~~~~~~~~~~f~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~~pDv~~~ 90 (412)
T 3k01_A 25 ELSGTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRT 90 (412)
T ss_dssp CCCEEEEEEECCCTTTHHHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred ccCcEEEEecCCCCcchHHHHHHHHHHHHHCcCeEEEEEecChHHHHHHHHHHHhcCCCCCCEEEe
Confidence 3456888887655 3356889999999999999999999877655444 445776 899986
No 408
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=78.64 E-value=2.5 Score=27.01 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=23.1
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAIIELEE 42 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i~~LE~ 42 (306)
+.|.|-...|+.+|+|++++++.|.++|.
T Consensus 12 ~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 12 RAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 34558889999999999997766777765
No 409
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=78.50 E-value=1.6 Score=26.71 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=19.7
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
+.|.|-...|+.+|+|++++|+..
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e 46 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALF 46 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 345588899999999999999653
No 410
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=78.44 E-value=1.7 Score=29.58 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=33.5
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQA 65 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~ 65 (306)
|...-|+.+|+|.++|.++++.||++ |. +..+.++|. ..++....
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~~~-G~-i~~~~~~G~-~V~~~~~~ 81 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQ-EV-IYNKRGIGF-FVASGAKM 81 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTT-TS-EEEETTTEE-EECTTHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-Cc-EEEEcCCcc-EEccCcHH
Confidence 44577999999999999999999965 55 555667777 47665543
No 411
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=78.34 E-value=2.9 Score=30.38 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHH
Q psy3760 4 HQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSI 70 (306)
Q Consensus 4 ~~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a 70 (306)
+..+.|..+.+.|.|-...|+.+|+|++.|++.|+-+. |.-.+...-..|-+.++.+...|....
T Consensus 40 E~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~LrLl~--Lp~~v~~~v~~g~is~~~A~~~L~~l~ 104 (178)
T 1r71_A 40 EIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLD--LPEKIADAFNTGRVRDVTVVNELVTAF 104 (178)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGS--CCHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHc--CCHHHHHHHHcCCCCHHHHHHHHHHhh
Confidence 34556667777777999999999999999999998873 666665544333224555556655443
No 412
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=78.23 E-value=25 Score=28.32 Aligned_cols=103 Identities=10% Similarity=0.099 Sum_probs=62.2
Q ss_pred CcEEEEecccchhhhhHHHHHHHHHhC--CCcEEEEEe-CChhHHHHHHHcCCeeEEEEcccc----C-CCCCceee--c
Q psy3760 93 GNLTIATTHTQARYALPKIIKEFTIQF--PKVKLSLLQ-GNPKQITEMIRNDQADIAIVTEIL----S-PSDKLISI--P 162 (306)
Q Consensus 93 ~~l~I~~~~~~~~~~l~~~l~~~~~~~--p~~~i~~~~-~~~~~~~~~l~~~~~Di~i~~~~~----~-~~~~~~~~--~ 162 (306)
..+|+++.......-...+...+...- |+..++++. .+..+.++.+.+|++|++...... . ...++... .
T Consensus 4 ~~vrwCv~s~~e~~KC~~l~~~~~~~~~~~~~~vecv~~~dy~~ci~ai~~g~aD~~~l~~~~~~~A~~~~~~l~pi~ae 83 (327)
T 1ryo_A 4 KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAE 83 (327)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHHHSCTTSCEEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHHHHcCCCcEEEeCccceeEEecccCCCEEEEEE
Confidence 468888876544444555555553322 356666655 467789999999999999974110 0 11222211 1
Q ss_pred ccc--------ceEEEEecCCCCCCCCCCcChhhhcCCCeEeecCCC
Q psy3760 163 CYQ--------WEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSF 201 (306)
Q Consensus 163 l~~--------~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~~~~ 201 (306)
.+. ..-++|+.++.+ ++++||.+..+-....+.
T Consensus 84 ~~~~~~~~~~~Y~sVaVVkkdS~------isl~dLkGKk~ch~~~~s 124 (327)
T 1ryo_A 84 FYGSKEDPQTFYYAVAVVKKDSG------FQMNQLRGKKSCHTGLGR 124 (327)
T ss_dssp EEECSSSEESEEEEEEEEETTCC------CCGGGCTTCCEEESCTTC
T ss_pred EecCCCCCCCceEEEEEEeCCCC------CChHHhCCCceEcCCCCC
Confidence 111 122667777753 579999998887776654
No 413
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=78.13 E-value=2.5 Score=32.94 Aligned_cols=74 Identities=11% Similarity=0.093 Sum_probs=50.4
Q ss_pred hcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCC-ccccCHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKR-IRGLTKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTG 93 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~-~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~~~~~~~~ 93 (306)
.+ ++-+..+.+||+.+++.-.+.+|+++==..= +|.|++ ..+||+.|+..+..+.+-+.. ...-.|
T Consensus 45 ~~-~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~-~~~Gr~~~Y~Lt~~g~~~l~~~~~ri~~-----------~~~Wdg 111 (266)
T 3l09_A 45 GV-ALSSFVERMGLQPQAMRVALHRLKRDGWVES-RRLGRVGFHRLSDSALTQTRAVAGRIYG-----------PGAGPA 111 (266)
T ss_dssp HH-HHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-EEETTEEEEEECHHHHHHHHTTHHHHHS-----------CCCCSC
T ss_pred HH-HHHHHHHHcCCCchHHHHHHHHHHHCCCeee-eecCCcceEEECHHHHHHHHHHHHHhcC-----------CCCCCC
Confidence 35 6788899999999999999999998732222 333332 238999999988776444321 334456
Q ss_pred cEEEE-ecc
Q psy3760 94 NLTIA-TTH 101 (306)
Q Consensus 94 ~l~I~-~~~ 101 (306)
...+. +..
T Consensus 112 ~W~lv~~~~ 120 (266)
T 3l09_A 112 PWHLAGMPP 120 (266)
T ss_dssp CCEEEECCS
T ss_pred CEEEEEecC
Confidence 66666 533
No 414
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=77.84 E-value=5.2 Score=26.10 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHH
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEE 42 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~ 42 (306)
.++++..+.+-. |++.-|+.+|+|.+||||--+.|..
T Consensus 48 R~~Ia~lL~~G~-SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 48 RFEVAKMLTDKR-TYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHCccHHHHHHHHHHHHc
Confidence 355666666655 9999999999999999998777754
No 415
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=77.80 E-value=6.6 Score=27.47 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=28.4
Q ss_pred CchHHHHHHHHHHHHcCceeEEecCC------CccccCHhHHHHHHHHH
Q psy3760 29 SQPGVSKAIIELEEELSIDIFIRHGK------RIRGLTKPGQAILRSIE 71 (306)
Q Consensus 29 sq~~~s~~i~~LE~~lg~~Lf~R~~~------~~~~lT~~G~~l~~~a~ 71 (306)
|-+-+-+.+++||+ ..|++...+ |- .+|+.|+.++..+-
T Consensus 100 sg~iiR~~LQqLE~---~g~Vek~~~g~~~k~GR-~lT~~G~~~LDriA 144 (155)
T 2xzm_T 100 HGKILRWALKSLED---LKIIRKDKNSATKKFSR-VITKEGMTELNRIA 144 (155)
T ss_dssp CHHHHHHHHHHHHH---TTSEEECSSCSSSTTCE-EECHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH---CCCEeecCCCCcCCCCC-EECHHHHHHHHHHH
Confidence 34567788899997 456666544 66 69999999887653
No 416
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=77.10 E-value=9 Score=31.08 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=43.0
Q ss_pred chhhHHHHHHHHHh-----c-CCHHHHHHHh--CCCchHHHHHHHHHHHHcCceeEEecCCCcc-ccCHhHHHHH
Q psy3760 2 NLHQFRFVREAVRQ-----N-FNLTEAAKAL--YTSQPGVSKAIIELEEELSIDIFIRHGKRIR-GLTKPGQAIL 67 (306)
Q Consensus 2 ~~~~l~~f~~v~~~-----~-~s~~~aA~~l--~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~-~lT~~G~~l~ 67 (306)
+-++-+++.++++. + -+...-|+.+ ++|..||-+-++.||++ | +..|.+++.. -||+.|.++|
T Consensus 16 ~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~-G--lL~r~HgsAgript~~g~r~y 87 (338)
T 1stz_A 16 NDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYL-G--YIYQPHTSAGRIPTDKGLRFY 87 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHT-T--SEECCSSCSCBEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHC-C--CEEEccCcceecCCcccchhh
Confidence 34566666654333 2 1466778888 99999999999999986 3 4566655431 3898886663
No 417
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=77.07 E-value=2.1 Score=25.63 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=18.7
Q ss_pred HhcCCHHHHHHHhCCCchHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSK 35 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~ 35 (306)
+.|.|-...|+.+|+|++++|+
T Consensus 22 ~~gltq~elA~~~gvs~~tis~ 43 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSR 43 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHH
Confidence 3456889999999999999886
No 418
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=76.98 E-value=1.8 Score=34.78 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=29.3
Q ss_pred CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEE-ecCCCc
Q psy3760 17 FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFI-RHGKRI 56 (306)
Q Consensus 17 ~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~-R~~~~~ 56 (306)
.+...-|++|++|.+||+|-|+.||++= +.. |..++.
T Consensus 22 ~~~~ela~~l~vS~~tIrRdL~~l~~~G---~v~iri~g~~ 59 (315)
T 2w48_A 22 MTQAQIARELGIYRTTISRLLKRGREQG---IVTIAINYDY 59 (315)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEEEECSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCC---cEEEEecCCc
Confidence 4678899999999999999999998863 333 555554
No 419
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=76.77 E-value=4.4 Score=24.30 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHhCCCchHHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~i 37 (306)
.|.|-...|+.+|+|++++|+..
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e 36 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIE 36 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 34588999999999999988643
No 420
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=76.64 E-value=2.6 Score=24.23 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
+.|.|....|+.+|+|++++++..
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e 35 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 345588999999999999998754
No 421
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=76.54 E-value=2.4 Score=24.88 Aligned_cols=22 Identities=9% Similarity=-0.108 Sum_probs=20.1
Q ss_pred CHHHHHHHhCCCchHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIE 39 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~ 39 (306)
+...+|+.|++|.+|+.+.+++
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 6789999999999999999985
No 422
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=76.05 E-value=4.8 Score=24.07 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
+.|.|....|+.+|+|++++|+..
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e 41 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMF 41 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 345588899999999999998754
No 423
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=76.04 E-value=5.3 Score=27.03 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=40.3
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-CCCccccCHhHHH
Q psy3760 5 QFRFVREAVRQ----NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-GKRIRGLTKPGQA 65 (306)
Q Consensus 5 ~l~~f~~v~~~----~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-~~~~~~lT~~G~~ 65 (306)
-++++..+++. ..|...-|+.++++++++.+.++.|++ .|.---.|. ++|. .|+.....
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~-~Glv~~~~g~~ggy-~L~~~~~~ 74 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRN-AGLVKSIRGAYGGY-VLGSEPDA 74 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHH-TTSEEEC----CCE-EESSCGGG
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHH-CCceEecCCCCCce-EeCCCHHH
Confidence 35556666653 127889999999999999999999987 566333333 2556 68776554
No 424
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=75.99 E-value=29 Score=27.83 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=38.8
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCC-hhHHHHHHHcC--CeeEEEEc
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN-PKQITEMIRND--QADIAIVT 149 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~-~~~~~~~l~~~--~~Di~i~~ 149 (306)
..++|+|..-.. .....++..|.+++ +++|++...+ .+++.+.|..| ..|+.+..
T Consensus 23 ~~~~l~v~~w~~---~~~~~~~~~Fe~~~-gi~V~~~~~~~~~~~~~kl~ag~~~pDv~~~~ 80 (343)
T 2v84_A 23 RQDVLYLYNWTY---YTPTSLIKKFEQQY-NVQVVYDDYASNEDMFAKLSIGASGYDLVVPS 80 (343)
T ss_dssp --CEEEEEEETT---TSCHHHHHHHHHHH-TCEEEEEEESCHHHHHHHHSSSCCSCSEECCB
T ss_pred CCCeEEEEeccc---ccCHHHHHHHHHHH-CCEEEEEeCCCHHHHHHHHHcCCCCCCEEEcC
Confidence 346788877543 23478999999997 9999988764 45578888765 47998753
No 425
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=75.53 E-value=0.89 Score=26.96 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=24.8
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG 53 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~ 53 (306)
+...+|+.||||.+||.+.+++ |.+-+...+
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~-----G~P~~~~~g 34 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ-----GMPVLRGGG 34 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT-----TCCCSSCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHC-----CCCeEeeCC
Confidence 5678999999999999998875 776555544
No 426
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=75.48 E-value=2.5 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.8
Q ss_pred hcCCHHHHHHHhCCCchHHHHHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~i~~L 40 (306)
.- |++.-|+..|+|++||+|-.++|
T Consensus 35 ~~-si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 35 NM-TSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HC-CHHHHHHHHCCCHHHHHHHHHHh
Confidence 56 99999999999999999988876
No 427
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=75.20 E-value=5.5 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=19.7
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
+.|.|-...|+.+|+|++++|+..
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Confidence 345588999999999999998654
No 428
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=75.04 E-value=3.1 Score=25.49 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=18.8
Q ss_pred cCCHHHHHHHhCCCchHHHHHH
Q psy3760 16 NFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 16 ~~s~~~aA~~l~isq~~~s~~i 37 (306)
|.+=+.-|+..||||+|+|.-.
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIe 53 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIV 53 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHH
T ss_pred hcCHHHHHHHcCCCHHHHHHHH
Confidence 5577899999999999999643
No 429
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=74.98 E-value=3.6 Score=25.26 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.1
Q ss_pred HHhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 13 VRQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 13 ~~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
.+.|.|-...|+.+|+|+++||+..
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e 52 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLM 52 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3445578889999999999999754
No 430
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=74.96 E-value=2.4 Score=29.89 Aligned_cols=22 Identities=14% Similarity=-0.062 Sum_probs=20.6
Q ss_pred CCHHHHHHHhCCCchHHHHHHH
Q psy3760 17 FNLTEAAKALYTSQPGVSKAII 38 (306)
Q Consensus 17 ~s~~~aA~~l~isq~~~s~~i~ 38 (306)
.|...+|+.||||.+|+.+..+
T Consensus 49 lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 49 RTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4999999999999999999877
No 431
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=74.95 E-value=2.4 Score=31.54 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=31.9
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
|-..-|..+|+|+.++||.+++|+++ -++.+.++++ .+.+
T Consensus 165 t~~~lA~~lg~sr~tvsR~l~~l~~~---g~I~~~~~~i-~i~d 204 (216)
T 4ev0_A 165 RHHELAALAGTSRETVSRVLHALAEE---GVVRLGPGTV-EVRE 204 (216)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT---TSEEEETTEE-EESC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHC---CCEEecCCEE-EEeC
Confidence 57889999999999999999999986 3445666776 4543
No 432
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=74.64 E-value=11 Score=31.07 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=41.0
Q ss_pred CCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCCh--hHHHHHHHcCC-eeEEEE
Q psy3760 92 TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP--KQITEMIRNDQ-ADIAIV 148 (306)
Q Consensus 92 ~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~--~~~~~~l~~~~-~Di~i~ 148 (306)
..+|++.....-....+..++.+|.+.||+++|++...+. ..+...+..|+ .|+...
T Consensus 18 ~~tl~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~pDv~~~ 77 (401)
T 2heu_A 18 TVTIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLAGDVPDVVNI 77 (401)
T ss_dssp SEEEEEECCCGGGHHHHHHHHHHHHHHCTTEEEEEECCTTHHHHHHHHHHTTCCCSEEEC
T ss_pred CEEEEEEecCCcHHHHHHHHHHHHHHHCcCeEEEEEeCCcHHHHHHHHHhcCCCCCEEEe
Confidence 3457766554322357889999999999999999987643 34566666664 799887
No 433
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=74.21 E-value=3.4 Score=34.17 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=25.9
Q ss_pred HHhcCCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 13 VRQNFNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 13 ~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
...- |-+.-|+.+++|+||+|+.+++|+++
T Consensus 31 ~~~~-sr~~la~~~gls~~tv~~~v~~L~~~ 60 (380)
T 2hoe_A 31 KSPV-SRVELAEELGLTKTTVGEIAKIFLEK 60 (380)
T ss_dssp HSCB-CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCc-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444 77888999999999999999999985
No 434
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=74.21 E-value=4.1 Score=28.61 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=40.1
Q ss_pred HHHHHHHhC--------------CCchHHHHHHHHHHHHcCceeEEe-cCCCccccCHhHHHHHHH-HHHHHHH
Q psy3760 19 LTEAAKALY--------------TSQPGVSKAIIELEEELSIDIFIR-HGKRIRGLTKPGQAILRS-IEIIMQE 76 (306)
Q Consensus 19 ~~~aA~~l~--------------isq~~~s~~i~~LE~~lg~~Lf~R-~~~~~~~lT~~G~~l~~~-a~~il~~ 76 (306)
...-|+.+| +|.+++.+++++||++ | |+++ .++|. .+|+.|...+.. +.+++..
T Consensus 70 ~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~-G--lV~~~~~~G~-~Vt~~~~~~l~~ia~~i~~~ 139 (150)
T 2v7f_A 70 IERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAA-G--FVEKVPGKGR-VITPKGRSFLDKIATELKKE 139 (150)
T ss_dssp HHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHT-T--SEEEETTTEE-EECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHC-C--CEEEeCCCce-EECCCCHHHHHHHHHHHHHH
Confidence 378899999 9999999999999975 3 4454 35677 699999876543 4444433
No 435
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=74.11 E-value=7.5 Score=31.48 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=0.0
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELE 41 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE 41 (306)
++...|+..|+|.+||||.|...+
T Consensus 5 ti~diA~~aGVS~~TVSrvLn~~~ 28 (349)
T 1jye_A 5 TLYDVAEYAGVSYQTVSRVVNQAS 28 (349)
T ss_dssp ------------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 678899999999999999998764
No 436
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=73.99 E-value=2.2 Score=28.22 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=22.4
Q ss_pred hcCCHHHHHHHhCCCchHHHHHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~i~~L 40 (306)
.- |++.-|+..|+|++||+|-.++|
T Consensus 39 ~~-si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 39 ES-TVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp TC-CHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hc-CHHHHHHHHCCCHHHHHHHHHHc
Confidence 56 99999999999999999988665
No 437
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=73.91 E-value=3.2 Score=24.63 Aligned_cols=25 Identities=16% Similarity=-0.020 Sum_probs=20.5
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAII 38 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i~ 38 (306)
+.|.|....|+.+|+|++++|+..+
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3455889999999999999997543
No 438
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=73.90 E-value=1.5 Score=31.07 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCcee
Q psy3760 7 RFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDI 48 (306)
Q Consensus 7 ~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~L 48 (306)
++|....-.|.|+...|+.||+|.+||..++.+-.+.|-..|
T Consensus 100 ~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 100 QALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp HHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 444443334569999999999999999877776666664444
No 439
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=73.61 E-value=2.6 Score=31.38 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=31.9
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
|-..-|..+|+|++++||.+++|+++ | ++.+.++++ .+.+
T Consensus 171 t~~~lA~~lg~sr~tvsR~l~~L~~~-g--~I~~~~~~i-~i~d 210 (220)
T 3dv8_A 171 THETIANHLGSHREVITRMLRYFQVE-G--LVKLSRGKI-TILD 210 (220)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEETTEE-EESC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHC-C--CEEeCCCEE-EEeC
Confidence 66789999999999999999999986 3 456666776 3443
No 440
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=73.23 E-value=6 Score=23.63 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCce
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSID 47 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~ 47 (306)
.+.-++.-.+.= ++...|..++++.+-+-.+|++||++=...
T Consensus 11 ~Fi~yIk~~Kvv-~LedLA~~F~l~t~~~i~RI~~Le~~g~lt 52 (72)
T 1wi9_A 11 EFINYIKKSKVV-LLEDLAFQMGLRTQDAINRIQDLLTEGTLT 52 (72)
T ss_dssp HHHHHHHHCSEE-CHHHHHHHHCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHcCee-eHHHHHHHhCCChHHHHHHHHHHHHCCCeE
Confidence 344455555566 789999999999999999999999985443
No 441
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=73.12 E-value=2.9 Score=30.59 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=31.7
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
|-..-|..+|+|+.++||.+++|+++ | ++.+.++++ .+.+
T Consensus 141 t~~~lA~~lg~sr~tvsR~l~~L~~~-g--~I~~~~~~i-~i~d 180 (195)
T 3b02_A 141 SHEEIADATASIRESVSKVLADLRRE-G--LIATAYRRV-YLLD 180 (195)
T ss_dssp CHHHHHHTTTSCHHHHHHHHHHHHHH-T--SEEEETTEE-EECC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHC-C--CEEecCCEE-EEeC
Confidence 45678999999999999999999986 4 456666776 4554
No 442
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=72.76 E-value=5.2 Score=23.15 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
+.|.|....|+.+|+|++++|+..
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 345588999999999999998753
No 443
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=72.65 E-value=12 Score=28.17 Aligned_cols=77 Identities=16% Similarity=0.121 Sum_probs=46.8
Q ss_pred cEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEcccc-------CCCCCce--eeccc
Q psy3760 94 NLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEIL-------SPSDKLI--SIPCY 164 (306)
Q Consensus 94 ~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~-------~~~~~~~--~~~l~ 164 (306)
..+||+...... . ..+.+.+|+..+.... +..+.++.|.+|++|+++..... .....+. ..++.
T Consensus 115 g~~i~v~~g~~~---~---~~l~~~~~~~~~~~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (245)
T 3k4u_A 115 ELTLVTKFGVSA---E---YAAKRLFKNAKLKTYD-TEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLT 187 (245)
T ss_dssp SCEEEEETTSHH---H---HHHHHHCSSSEEEEES-SHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCS
T ss_pred CcEEEEeCCcHH---H---HHHHhhCCcCCEEEeC-CHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcc
Confidence 467887765432 1 2234457888776654 56788999999999999985210 1112222 23445
Q ss_pred cceEEEEecCCCC
Q psy3760 165 QWEYVIIVPLDHP 177 (306)
Q Consensus 165 ~~~~~~v~~~~~~ 177 (306)
..++++++++++|
T Consensus 188 ~~~~~~~~~k~~~ 200 (245)
T 3k4u_A 188 YEPLGWAIKKGDP 200 (245)
T ss_dssp CEEECCEECTTCH
T ss_pred cccEEEEEcCCCH
Confidence 5667777776654
No 444
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=72.62 E-value=4.2 Score=26.20 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHhC----CCchHHHHHHHHHHHHcCceeEEecCCC
Q psy3760 5 QFRFVREAVRQN-FNLTEAAKALY----TSQPGVSKAIIELEEELSIDIFIRHGKR 55 (306)
Q Consensus 5 ~l~~f~~v~~~~-~s~~~aA~~l~----isq~~~s~~i~~LE~~lg~~Lf~R~~~~ 55 (306)
++.++..+.+.| .|...-|+.++ ++++|+++.|++||+. |.---.+.++.
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K-GlV~R~~~gR~ 91 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKK-EMLSTEKEGRK 91 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT-TSCEEEEETTE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC-CCEEEEeCCCE
Confidence 344555554433 26778899997 5799999999999984 43333344443
No 445
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=72.47 E-value=7 Score=22.43 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=19.1
Q ss_pred hcCCHHHHHHHhCCCchHHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~i 37 (306)
.|.|....|+.+|+|++++|+..
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e 39 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH
Confidence 34588999999999999998653
No 446
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=72.02 E-value=8.6 Score=28.52 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHhC---CCchHHHHHHHHHHHHcCc
Q psy3760 3 LHQFRFVREAVRQ----NFNLTEAAKALY---TSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 3 ~~~l~~f~~v~~~----~~s~~~aA~~l~---isq~~~s~~i~~LE~~lg~ 46 (306)
-+..+++..+++. - |-..-|+.++ +|..|+..++++|.+.||.
T Consensus 148 ~rE~~vl~~l~~~~~~~~-s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 148 KKEFEILLFLAENAGKVV-TREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp HHHHHHHHHHHHTTTSCE-EHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCCceE-cHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 3567778888886 6 8999999999 9999999999999999986
No 447
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=71.65 E-value=4.6 Score=25.43 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=20.6
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAII 38 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i~ 38 (306)
+.|.|....|+.+|+|++++|+..+
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3445889999999999999997554
No 448
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=71.54 E-value=8 Score=26.56 Aligned_cols=52 Identities=8% Similarity=-0.045 Sum_probs=35.7
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEe-cCC-----CccccCHhHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIR-HGK-----RIRGLTKPGQAILRSI 70 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R-~~~-----~~~~lT~~G~~l~~~a 70 (306)
|...-|+.+++|.+++.+.|++|++.==..+-.| +.. .+ .+||.=+.|....
T Consensus 53 s~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~y-dL~pL~ekL~~~~ 110 (135)
T 2v79_A 53 TPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKY-SLQPLWGKLYEYI 110 (135)
T ss_dssp CHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEE-ECHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEe-eHHHHHHHHHHHH
Confidence 8899999999999999999999998622233222 221 33 5777655554444
No 449
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=71.25 E-value=2.9 Score=31.34 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=29.3
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI 56 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~ 56 (306)
|-..-|..+|+|+.++||.+++|+++ | ++.++++++
T Consensus 180 t~~~lA~~lg~sr~tvsR~l~~l~~~-g--~I~~~~~~i 215 (227)
T 3dkw_A 180 AKQLVAGHLSIQPETFSRIMHRLGDE-G--IIHLDGREI 215 (227)
T ss_dssp CTHHHHHHTTSCHHHHHHHHHHHHHH-T--SEEESSSCE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHC-C--cEEecCCEE
Confidence 44788999999999999999999987 3 445566665
No 450
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=71.13 E-value=3.2 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHhCCCchHHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~i 37 (306)
.|.|....|+.+|+|++++|+..
T Consensus 22 ~gltq~elA~~~gis~~~is~~E 44 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIE 44 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 34588899999999999998643
No 451
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=71.11 E-value=3.2 Score=31.22 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=32.1
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
|-..-|..+|+|+.++||.+++|+++ -++.++++++ .+.+
T Consensus 177 t~~~iA~~lg~sr~tvsR~l~~L~~~---g~I~~~~~~i-~i~d 216 (231)
T 3e97_A 177 GTQDIMARTSSSRETVSRVLKRLEAH---NILEVSPRSV-TLLD 216 (231)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEECSSCE-EESC
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHC---CcEEecCCEE-EEeC
Confidence 56788999999999999999999985 4556667776 4544
No 452
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=70.99 E-value=7.3 Score=23.01 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=19.2
Q ss_pred hcCCHHHHHHHhCCCchHHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~i 37 (306)
.|.|....|+.+|+|++++|+..
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e 39 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWE 39 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45588999999999999988654
No 453
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=70.92 E-value=3.4 Score=30.38 Aligned_cols=40 Identities=28% Similarity=0.197 Sum_probs=31.1
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
|-..-|..+|+|+.++||.+++|+++ | ++.+.++.+ .+.+
T Consensus 148 t~~~lA~~lg~sr~tvsR~l~~L~~~-g--~I~~~~~~i-~i~d 187 (202)
T 2zcw_A 148 THDELAAAVGSVRETVTKVIGELARE-G--YIRSGYGKI-QLLD 187 (202)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEETTEE-EESC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHC-C--CEEeCCCEE-EEeC
Confidence 45678999999999999999999886 4 345566676 4544
No 454
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=70.66 E-value=8.3 Score=30.65 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=60.8
Q ss_pred CCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHH----cCCeeEEEEcc-c-c---------CC-
Q psy3760 91 DTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIR----NDQADIAIVTE-I-L---------SP- 154 (306)
Q Consensus 91 ~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~----~~~~Di~i~~~-~-~---------~~- 154 (306)
..++|+|...... ..+..++..|.+++ +++|++. .++.++.+.|. ++..|+.+... . . .+
T Consensus 4 ~~~~l~v~~~~~~--~~~~~~~~~F~~~~-gi~V~~~-~~~~~~~~kl~~~~~~~~~Dv~~~~~~~~~~~~~~~g~l~~l 79 (323)
T 1y9u_A 4 MSDEVSLYTTREP--KLIQPLLDAFAKDS-GIKVNTV-FVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKI 79 (323)
T ss_dssp --CEEEEEESSCG--GGTHHHHHHHHHHH-CCEEEEE-ECSSCHHHHHHHHGGGCCCCEEEEESHHHHHHHHHTTCEECC
T ss_pred cCceEEEEeCCCH--HHHHHHHHHHHHhh-CcEEEEE-eCcHHHHHHHHHhcCCCCCCEEEecChHHHHHHHHCCCeeeC
Confidence 3467888876553 57889999999998 9999998 77667776665 35689997621 0 0 00
Q ss_pred -C--------CCc-----eeeccccceEEEEecCC-CCCCCCCCcChhhhcC
Q psy3760 155 -S--------DKL-----ISIPCYQWEYVIIVPLD-HPLLLLNSISLKEISN 191 (306)
Q Consensus 155 -~--------~~~-----~~~~l~~~~~~~v~~~~-~~l~~~~~i~~~dl~~ 191 (306)
. +.+ ...++....++++.+++ .. .. + +++||.+
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~p~~~~~~~l~yNkd~~~-~~--P-tw~dl~~ 127 (323)
T 1y9u_A 80 QSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKL-DS--F-RYGDLAD 127 (323)
T ss_dssp CCHHHHHHSCGGGBCGGGSCEEEEEEEEEEEEETTCCC-CC--C-BGGGGGC
T ss_pred ChhhhhhhccHhhCCCCCeEEEEecceeEEEEcCcccc-CC--C-CHHHHhh
Confidence 0 001 13345556778888888 52 22 5 9999976
No 455
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=70.33 E-value=21 Score=29.49 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=40.6
Q ss_pred CcEEEEeccc-chhhhhHHHHHHHHHhCCCcEEEEEeCC------hhHHHHHHHcCC--eeEEEE
Q psy3760 93 GNLTIATTHT-QARYALPKIIKEFTIQFPKVKLSLLQGN------PKQITEMIRNDQ--ADIAIV 148 (306)
Q Consensus 93 ~~l~I~~~~~-~~~~~l~~~l~~~~~~~p~~~i~~~~~~------~~~~~~~l~~~~--~Di~i~ 148 (306)
++|++-.... -....+..++.+|.+.||+++|++...+ ...+...+..|+ .|+...
T Consensus 4 ~~l~~w~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~kl~~~~aag~~P~Dv~~~ 68 (409)
T 1eu8_A 4 GKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLM 68 (409)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHHHHSTTCEEEEEECCSSHHHHHHHHHHHHTTTCSSEEEEEE
T ss_pred ccEEEEeCCCCChHHHHHHHHHHHHHHCCCeEEEEEECChhhhHHHHHHHHHHhcCCCCCCEEEE
Confidence 4677665431 2345788899999999999999988754 235666777787 499876
No 456
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=70.16 E-value=15 Score=27.46 Aligned_cols=30 Identities=7% Similarity=0.272 Sum_probs=25.0
Q ss_pred CCCcEEEEEeCChhHHHHHHHcCCeeEEEEc
Q psy3760 119 FPKVKLSLLQGNPKQITEMIRNDQADIAIVT 149 (306)
Q Consensus 119 ~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~ 149 (306)
+|+.++.... +..+.++.|.+|++|.++..
T Consensus 136 ~~~~~~~~~~-~~~~~~~~L~~g~vDa~~~~ 165 (242)
T 3del_B 136 LSEVHIRSFD-STLEVLMEVMHGKSPVAVLE 165 (242)
T ss_dssp STTCCEEEES-SHHHHHHHHHTTSSSEEEEC
T ss_pred CCCceEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 7888776654 67789999999999999985
No 457
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=69.76 E-value=9.7 Score=28.76 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=33.7
Q ss_pred EEEEecccchhhhhHHHHHHHHHhCC-CcEEEEEeCChhHHHHHHHcCCeeEEEEc
Q psy3760 95 LTIATTHTQARYALPKIIKEFTIQFP-KVKLSLLQGNPKQITEMIRNDQADIAIVT 149 (306)
Q Consensus 95 l~I~~~~~~~~~~l~~~l~~~~~~~p-~~~i~~~~~~~~~~~~~l~~~~~Di~i~~ 149 (306)
.+||+..+... ...+..+.+.++ +..+.+...+..+++..|.+|++|..+..
T Consensus 119 ~~v~v~~gs~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~ 171 (243)
T 4gvo_A 119 KRVITSATSNG---ALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIST 171 (243)
T ss_dssp CEEEECTTCHH---HHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEEC
T ss_pred CeEEEecCchH---HHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEcc
Confidence 46776654322 334555555554 44444455667789999999999998864
No 458
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=69.24 E-value=5.4 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=21.5
Q ss_pred HHHHHHhcCCHHHHHHHhCCCchHHHHH
Q psy3760 9 VREAVRQNFNLTEAAKALYTSQPGVSKA 36 (306)
Q Consensus 9 f~~v~~~~~s~~~aA~~l~isq~~~s~~ 36 (306)
+..+-+.. |....|+.+|+|++++++.
T Consensus 21 l~~~R~~~-sq~~lA~~~gis~~~is~~ 47 (86)
T 2ofy_A 21 LRSARGDM-SMVTVAFDAGISVETLRKI 47 (86)
T ss_dssp HHHHHTTS-CHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHC-CHHHHHHHhCCCHHHHHHH
Confidence 34455566 8899999999999998864
No 459
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=69.21 E-value=2.7 Score=34.15 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=0.0
Q ss_pred CHHHHHHHhCCCchHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~L 40 (306)
++...|+..|+|.+||||.|..-
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~~ 32 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALADN 32 (348)
T ss_dssp -----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCCC
Confidence 67889999999999999999863
No 460
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=69.20 E-value=3.8 Score=30.53 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=31.2
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-CCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-GKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-~~~~~~lT~ 61 (306)
|-..-|..+|+|+.++||.+++|+++ | ++.+. ++.+ .+.+
T Consensus 169 t~~~lA~~lg~sr~tvsR~l~~l~~~-g--~I~~~~~~~i-~i~d 209 (220)
T 2fmy_A 169 NTEEIALMLGTTRQTVSVLLNDFKKM-G--ILERVNQRTL-LLKD 209 (220)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT-T--SEEESSSSEE-EESC
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHC-C--CEEEcCCCEE-EEcC
Confidence 56778999999999999999999886 4 45665 5666 4543
No 461
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=69.16 E-value=23 Score=23.76 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=32.9
Q ss_pred HhCCCchHHHHHHHHHHHHcCceeEEe---cCC----CccccCHhHHH--HHHHHHHHHH
Q psy3760 25 ALYTSQPGVSKAIIELEEELSIDIFIR---HGK----RIRGLTKPGQA--ILRSIEIIMQ 75 (306)
Q Consensus 25 ~l~isq~~~s~~i~~LE~~lg~~Lf~R---~~~----~~~~lT~~G~~--l~~~a~~il~ 75 (306)
...+|+.++-..+.+||++==+.=..+ ..+ .+.++|+.|+. .+....+-++
T Consensus 49 ~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~~~~~ 108 (122)
T 1bm9_A 49 GFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELD 108 (122)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhhHHHHHHHHHHHH
Confidence 578999999999999998732222223 121 22389999998 4444443333
No 462
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=69.12 E-value=4.1 Score=30.44 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=28.7
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCC
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKR 55 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~ 55 (306)
|-..-|..+|+|+.++||.+++|+++ |. +.+.+++
T Consensus 165 t~~~lA~~lG~sr~tvsR~l~~L~~~-g~--I~~~~~~ 199 (222)
T 1ft9_A 165 TVEEIANLIGSSRQTTSTALNSLIKE-GY--ISRQGRG 199 (222)
T ss_dssp CHHHHHHHHCSCHHHHHHHHHHHHHT-TS--SEECSTT
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHC-Cc--EEEcCCc
Confidence 55778999999999999999999886 43 4556666
No 463
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=69.05 E-value=6.7 Score=23.02 Aligned_cols=24 Identities=8% Similarity=-0.133 Sum_probs=19.6
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
+.|.|....|+.+|+|++++++..
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e 47 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVE 47 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 345588899999999999998754
No 464
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=69.00 E-value=4.8 Score=23.91 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=19.7
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
+.|.|....|+.+|+|++++++..
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e 44 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWC 44 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 345588999999999999998754
No 465
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=68.91 E-value=6 Score=25.38 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHhCCCchHHHHH
Q psy3760 8 FVREAVRQNFNLTEAAKALYTSQPGVSKA 36 (306)
Q Consensus 8 ~f~~v~~~~~s~~~aA~~l~isq~~~s~~ 36 (306)
++..++.. +-...|+.+|+++|+|||.
T Consensus 17 il~~la~~--gq~~vA~~iGV~~StISR~ 43 (97)
T 1xwr_A 17 LLNKIAML--GTEKTAEAVGVDKSQISRW 43 (97)
T ss_dssp HHHHHHHH--CHHHHHHHHTCCTTTHHHH
T ss_pred HHHHHHHH--hHHHHHHHhCCCHHHHHHH
Confidence 34555554 4589999999999999994
No 466
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=68.88 E-value=5.4 Score=33.60 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=29.6
Q ss_pred HHHHHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 6 l~~f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
..++..+.+.+ .|-+.-|+.+++|+||+|+.+++|+++
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~ 80 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34555555554 266777999999999999999999984
No 467
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=68.86 E-value=6.7 Score=23.29 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=19.7
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
+.|.|....|+.+|+|++++|+..
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e 44 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHH
Confidence 345588999999999999998754
No 468
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=68.55 E-value=3.8 Score=25.39 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=18.2
Q ss_pred hcCCHHHHHHHhCCCchHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKA 36 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~ 36 (306)
.|.|-...|+.+|+|++++|+.
T Consensus 26 ~gltq~elA~~~gis~~~is~~ 47 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKV 47 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHH
Confidence 4557889999999999998853
No 469
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=68.49 E-value=47 Score=27.08 Aligned_cols=98 Identities=9% Similarity=0.023 Sum_probs=50.0
Q ss_pred CCcEEEEecccch--hhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC-------CC-CCceee
Q psy3760 92 TGNLTIATTHTQA--RYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS-------PS-DKLISI 161 (306)
Q Consensus 92 ~~~l~I~~~~~~~--~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~-------~~-~~~~~~ 161 (306)
...++|++..... ..++..--.-|.+. ++++++....+.. ..+..+..|++...+... .. ..+...
T Consensus 17 ~~~l~i~~~~~~~~~~~~vA~~~G~f~~~--Gl~Ve~~~~~~g~--~~~~~~~~d~~~~~g~~~~~~a~~~g~~~~~~~v 92 (365)
T 2de3_A 17 AIRDTLTYSNSPVPNALLTASESGFLDAA--GIELDVLSGQQGT--VHFTYDQPAYTRFGGEIPPLLSEGLRAPGRTRLL 92 (365)
T ss_dssp ---CEEEEEECSSCCHHHHHHHTTHHHHT--TCEEEECBGGGTT--HHHHCCSTTEEEEECSHHHHHHHHTTCTTSEEEE
T ss_pred ccceEEEEecCCCccHHHHHHHcCchhhc--CceEEEEeCCChh--HHHhccCchhhhhcCCcHHHHHHhcCCCCCeEEE
Confidence 3468888875432 22222222233332 7888887755432 245678888863221110 11 123222
Q ss_pred cc--ccceEEEEecCCCCCCCCCCcChhhhcCCCeEeec
Q psy3760 162 PC--YQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYD 198 (306)
Q Consensus 162 ~l--~~~~~~~v~~~~~~l~~~~~i~~~dl~~~~~i~~~ 198 (306)
.+ ......++++++.+ .-+++||.+.++....
T Consensus 93 ~~~~~~~~~~i~v~~ds~-----I~s~~DLkGk~Igv~~ 126 (365)
T 2de3_A 93 GITPLLGRQGFFVRDDSP-----ITAAADLAGRRIGVSA 126 (365)
T ss_dssp EEEEECCSEEEEEETTCS-----CCSGGGGTTCEEEECH
T ss_pred EEeccCCcceEEECCCCC-----CCCHHHhCCCeEEeec
Confidence 22 12356777777654 3478999998877654
No 470
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=68.36 E-value=3.8 Score=25.00 Aligned_cols=22 Identities=32% Similarity=0.176 Sum_probs=18.6
Q ss_pred hcCCHHHHHHHhCCCchHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKA 36 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~ 36 (306)
.|.|-...|+.+|+|++++|+.
T Consensus 26 ~gltq~elA~~~gis~~~is~~ 47 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKT 47 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4568889999999999998864
No 471
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=68.19 E-value=5.9 Score=31.77 Aligned_cols=23 Identities=30% Similarity=0.219 Sum_probs=0.0
Q ss_pred CHHHHHHHhCCCchHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIEL 40 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~L 40 (306)
++...|+..|+|.+||||.|...
T Consensus 4 ti~diA~~agVS~~TVSrvln~~ 26 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNNT 26 (330)
T ss_dssp -----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcCC
Confidence 67788999999999999999874
No 472
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=67.98 E-value=15 Score=25.58 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=41.4
Q ss_pred HHHHHHHHHh---cCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHH
Q psy3760 6 FRFVREAVRQ---NFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQA 65 (306)
Q Consensus 6 l~~f~~v~~~---~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~ 65 (306)
++.++.++.. ..|...-|+.++++++.+.+.+++|++ .|.---.|.++|. .|+.....
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~-~Glv~s~rG~GGy-~L~~~p~~ 77 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQ-AGFVYVNRGPGGA-GLLKDLHE 77 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH-TTSEEEC---CCE-EESSCGGG
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCcEEEccCCCce-EeCCChhh
Confidence 5566666642 137889999999999999999999987 7874445555566 68877554
No 473
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=67.87 E-value=6.4 Score=23.78 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=23.8
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
+...-|++||+|.+.+.|.|-.||+.
T Consensus 31 Ta~~IAkkLg~sK~~vNr~LY~L~kk 56 (75)
T 1sfu_A 31 TAISLSNRLKINKKKINQQLYKLQKE 56 (75)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 56778999999999999999999986
No 474
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=67.75 E-value=4.5 Score=30.28 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=30.9
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
|-..-|..+|+|+.++||.+++|+++ | ++.+.++.+ .+.+
T Consensus 179 t~~~lA~~lg~sr~tvsR~l~~l~~~-g--~I~~~~~~i-~i~d 218 (227)
T 3d0s_A 179 TQEEIAQLVGASRETVNKALADFAHR-G--WIRLEGKSV-LISD 218 (227)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT-T--SEEEETTEE-EESC
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHC-C--CEEecCCEE-EEcC
Confidence 45667999999999999999999986 4 445566666 3543
No 475
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=67.71 E-value=4.2 Score=31.12 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=31.6
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccC
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT 60 (306)
|-..-|..+|+|+.++||.+++|+++ -++.+.++++ ...
T Consensus 179 t~~~iA~~lG~sr~tvsR~l~~L~~~---g~I~~~~~~i-~i~ 217 (250)
T 3e6c_C 179 SQKSIGEITGVHHVTVSRVLASLKRE---NILDKKKNKI-IVY 217 (250)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEECSSEE-EES
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHC---CCeEeCCCEE-EEe
Confidence 56778999999999999999999985 4556677776 344
No 476
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=67.59 E-value=0.48 Score=33.98 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=24.1
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEE 43 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~ 43 (306)
|...-|+.+|+|++++.++|++||++
T Consensus 29 s~~eLa~~lgvSr~~vr~al~~L~~~ 54 (163)
T 2gqq_A 29 SNVELSKRVGLSPTPCLERVRRLERQ 54 (163)
T ss_dssp CTTGGGTSSSCCTTTSSSTHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 67788999999999999999999887
No 477
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=67.55 E-value=7.8 Score=23.98 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCHHHHHHHhCCCchHHHHHHH
Q psy3760 8 FVREAVRQNFNLTEAAKALYTSQPGVSKAII 38 (306)
Q Consensus 8 ~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~ 38 (306)
++..++..| =...|+.+|++.|+|||.=.
T Consensus 18 iL~~La~~g--Q~~vAe~~GvdeStISR~k~ 46 (83)
T 1zs4_A 18 LLNKIAMLG--TEKTAEAVGVDKSQISRWKR 46 (83)
T ss_dssp HHHHHHHHC--HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHh--hHHHHHHhCCCHHHHhhhhh
Confidence 445555543 47899999999999999533
No 478
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=67.48 E-value=18 Score=21.96 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=36.7
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecC-CCccccCHhHHHHHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHG-KRIRGLTKPGQAILRSIEIIM 74 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~-~~~~~lT~~G~~l~~~a~~il 74 (306)
++..+|+.+|+|.+||-+ .|++.|..-..|+. +|.-.-|+.--.-+..++.+.
T Consensus 7 ~i~e~A~~~gvs~~tlR~----ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~ 60 (81)
T 2jml_A 7 RIRTIARMTGIREATLRA----WERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLI 60 (81)
T ss_dssp EHHHHHHTTSTTHHHHHH----HHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHH----HHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHH
Confidence 688999999999988765 57766665556764 443146776666666666665
No 479
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=67.30 E-value=11 Score=28.74 Aligned_cols=41 Identities=20% Similarity=0.047 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCc
Q psy3760 5 QFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSI 46 (306)
Q Consensus 5 ~l~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~ 46 (306)
..+++..+.+.. +....|+.|++|..+|...++.+-+.||+
T Consensus 203 ~~~i~~~~~~g~-~~~eia~~l~~s~~tv~~~l~~i~~kl~~ 243 (258)
T 3p7n_A 203 QLEVTTLVASGL-RNKEVAARLGLSEKTVKMHRGLVMEKLNL 243 (258)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 345555566555 99999999999999999999999998875
No 480
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=67.19 E-value=45 Score=27.00 Aligned_cols=77 Identities=13% Similarity=-0.045 Sum_probs=48.8
Q ss_pred HHHHHHhc-CCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEec-CCCccccCHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3760 9 VREAVRQN-FNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRH-GKRIRGLTKPGQAILRSIEIIMQEIEGLKKIGKE 86 (306)
Q Consensus 9 f~~v~~~~-~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~-~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~ 86 (306)
+.++.+.| .+...-|+.+++++|+++..|++|++.= .---... ++.. ++.+....+-...+++-+.++.+......
T Consensus 24 Y~~Ll~~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~G-lV~~~~g~p~~y-~av~p~~~l~~l~~~~~~~~~~L~~~~~~ 101 (342)
T 3qph_A 24 YWTLLVYGPSTAKEISTKSGIPYNRVYDTISSLKLRG-FVTEIEGTPKVY-AAYSPRIAFFRFKKELEDIMKKLEIELNN 101 (342)
T ss_dssp SHHHHHHHHHHHSCCSSSTTSSSCSCCHHHHHHHHHT-SEEEECCTTCEE-EECCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-CEEEEcCceeEE-EEcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444443 0445678999999999999999999863 3322222 2333 67777766666666666666666665554
Q ss_pred h
Q psy3760 87 F 87 (306)
Q Consensus 87 ~ 87 (306)
.
T Consensus 102 ~ 102 (342)
T 3qph_A 102 V 102 (342)
T ss_dssp T
T ss_pred c
Confidence 3
No 481
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=67.09 E-value=3.8 Score=26.69 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=21.0
Q ss_pred HHHhcCCHHHHHHHhCCCchHHHHHH
Q psy3760 12 AVRQNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 12 v~~~~~s~~~aA~~l~isq~~~s~~i 37 (306)
.-+.|.|-...|+.+|+|+++||+..
T Consensus 23 r~~~gltq~eLA~~lGis~~~is~ie 48 (104)
T 3trb_A 23 GFLDKMSANQLAKHLAIPTNRVTAIL 48 (104)
T ss_dssp HHTTSCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34456688899999999999999754
No 482
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=66.86 E-value=4.6 Score=30.39 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=31.6
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
|-..-|..+|+|+.++||.+++|+++ | ++.+.++++ .+.+
T Consensus 182 t~~~lA~~lg~sr~tvsR~l~~l~~~-g--~I~~~~~~i-~i~d 221 (232)
T 2gau_A 182 SREELATLSNMTVSNAIRTLSTFVSE-R--MLALDGKRI-KIID 221 (232)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHT-T--SEEEETTEE-EESC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHC-C--CEeeCCCEE-EEeC
Confidence 55778999999999999999999885 4 456666776 4544
No 483
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=66.63 E-value=4.9 Score=30.31 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=29.0
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCc
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRI 56 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~ 56 (306)
|-..-|..+|+|+.++||.+++|+++ |. +.+.++++
T Consensus 188 t~~~lA~~lG~sr~tvsR~l~~l~~~-gl--I~~~~~~i 223 (232)
T 1zyb_A 188 KMDDLARCLDDTRLNISKTLNELQDN-GL--IELHRKEI 223 (232)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT-TS--CEEETTEE
T ss_pred CHHHHHHHhCCChhHHHHHHHHHHHC-CC--EEecCCEE
Confidence 56788999999999999999999875 44 45555665
No 484
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=66.52 E-value=45 Score=26.10 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3760 7 RFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIEIIMQEIEGLKKIGKE 86 (306)
Q Consensus 7 ~~f~~v~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~ 86 (306)
++|.-..-.|+|+...|+.++++.+++..++.+-...+.
T Consensus 118 ~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr----------------------------------------- 156 (286)
T 3n0r_A 118 QAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQAEID----------------------------------------- 156 (286)
T ss_dssp HHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred eEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHHhhhh-----------------------------------------
Confidence 455555555669999999999999998877765432211
Q ss_pred hccCCCCcEEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEc
Q psy3760 87 FSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVT 149 (306)
Q Consensus 87 ~~~~~~~~l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~ 149 (306)
......+-+ +.+. .....++..+.+.. +..+.-...+..+.++.+.....|+++.-
T Consensus 157 --~~l~~rILv-VdD~---~~~~~~l~~~L~~~-g~~v~~~a~~g~eAl~~~~~~~~dlvl~D 212 (286)
T 3n0r_A 157 --AELATEVLI-IEDE---PVIAADIEALVREL-GHDVTDIAATRGEALEAVTRRTPGLVLAD 212 (286)
T ss_dssp --TSCCCEEEE-ECCS---HHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHCCCSEEEEE
T ss_pred --ccCCCcEEE-EcCC---HHHHHHHHHHhhcc-CceEEEEeCCHHHHHHHHHhCCCCEEEEc
Confidence 111112222 2221 12233344444433 56665345667788999999999999984
No 485
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=66.40 E-value=4.1 Score=31.06 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=33.2
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccC
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT 60 (306)
..- ++..-|+.+|+++++|+.++++|.+.= ++.|.+.|.|.+.
T Consensus 177 ~~~-t~~~la~~~~l~~~~V~~~l~~L~~~~---~v~~~~~~~~~~~ 219 (232)
T 2qlz_A 177 GRA-TVEELSDRLNLKEREVREKISEMARFV---PVKIINDNTVVLD 219 (232)
T ss_dssp SEE-EHHHHHHHHTCCHHHHHHHHHHHTTTS---CEEEETTTEEEEC
T ss_pred CCC-CHHHHHHHhCcCHHHHHHHHHHHHhcC---CeEEecCCeEEec
Confidence 455 889999999999999999999998754 4446666654343
No 486
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=66.27 E-value=23 Score=27.08 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=46.2
Q ss_pred EEEEecccchhhhhHHHHHHHHHhCCCcEEEEEeCChhHHHHHHHcCCeeEEEEccccC-------CCCCceeecc---c
Q psy3760 95 LTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILS-------PSDKLISIPC---Y 164 (306)
Q Consensus 95 l~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~~~~~-------~~~~~~~~~l---~ 164 (306)
.+||+...... -..+.+.+|+.++.... +..+.++.|.+|++|.++...... ....+..... .
T Consensus 140 ~~i~v~~g~~~------~~~l~~~~~~~~~~~~~-~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (267)
T 3mpk_A 140 RTVALVRNSAA------IPLLQRRYPQAKVVTAD-NPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLP 212 (267)
T ss_dssp CEEEEETTCTH------HHHHHHHCTTSEEEEES-SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSC
T ss_pred CEEEEeCCchh------HHHHHHhCCCcEEEEeC-CHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCC
Confidence 57777765332 12334568888876654 467899999999999999852110 1223332222 2
Q ss_pred cceEEEEecCCCC
Q psy3760 165 QWEYVIIVPLDHP 177 (306)
Q Consensus 165 ~~~~~~v~~~~~~ 177 (306)
...+.+++++++|
T Consensus 213 ~~~~~~~~~k~~~ 225 (267)
T 3mpk_A 213 PAEIALATTRGQT 225 (267)
T ss_dssp CEEEEEEEETTCH
T ss_pred ceeEEEEEcCCCH
Confidence 4566677776654
No 487
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=65.86 E-value=5.1 Score=30.50 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=31.1
Q ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
+-..-|..+|+|+.++||.+++|+++ | ++.+.++++ .+.+
T Consensus 195 t~~~lA~~lG~sr~tvsR~l~~L~~~-G--lI~~~~~~i-~I~d 234 (243)
T 3la7_A 195 SHQAIAEAIGSTRVTVTRLLGDLREK-K--MISIHKKKI-TVHK 234 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEETTEE-EECC
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHC-C--CEEEcCCEE-EECC
Confidence 56889999999999999999999976 4 445556666 3443
No 488
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=65.76 E-value=4.6 Score=24.59 Aligned_cols=23 Identities=30% Similarity=0.190 Sum_probs=18.4
Q ss_pred hcCCHHHHHHHhCCCchHHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKAI 37 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~i 37 (306)
.|.|-...|+.+|+|++++++..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e 44 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIE 44 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 44578889999999999887543
No 489
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=65.69 E-value=8.7 Score=26.52 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHhCC-CchHHHHHHHHHHH
Q psy3760 6 FRFVREAVRQNFNLTEAAKALYT-SQPGVSKAIIELEE 42 (306)
Q Consensus 6 l~~f~~v~~~~~s~~~aA~~l~i-sq~~~s~~i~~LE~ 42 (306)
.+-++.....|.|+..+++..+| |.+|+.+.+++=++
T Consensus 18 ~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~e 55 (140)
T 4dyq_A 18 ADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHED 55 (140)
T ss_dssp HHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHH
T ss_pred HHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHH
Confidence 34455555566699999999999 99999999988443
No 490
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=65.39 E-value=4.8 Score=24.48 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=18.4
Q ss_pred hcCCHHHHHHHhCCCchHHHHH
Q psy3760 15 QNFNLTEAAKALYTSQPGVSKA 36 (306)
Q Consensus 15 ~~~s~~~aA~~l~isq~~~s~~ 36 (306)
.|.|....|+.+|+|++++|+.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~ 44 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGI 44 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHH
Confidence 4558889999999999998864
No 491
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=65.35 E-value=4.7 Score=24.04 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.6
Q ss_pred CHHHHHHHhCCCchHHHHHHHH
Q psy3760 18 NLTEAAKALYTSQPGVSKAIIE 39 (306)
Q Consensus 18 s~~~aA~~l~isq~~~s~~i~~ 39 (306)
|+..||+.+||+.+++-+.+++
T Consensus 18 Ti~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 18 TIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EHHHHHHHTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHc
Confidence 7889999999999999988754
No 492
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=65.25 E-value=5.5 Score=28.61 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=13.7
Q ss_pred hCCCchHHHHHHHHH
Q psy3760 26 LYTSQPGVSKAIIEL 40 (306)
Q Consensus 26 l~isq~~~s~~i~~L 40 (306)
..+||+||||-|++|
T Consensus 49 i~vTQATlSRDikEL 63 (170)
T 3lap_A 49 IEVTQATLSRDLEEL 63 (170)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCcCchhHHHHHHHc
Confidence 579999999999987
No 493
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=65.25 E-value=4.3 Score=34.87 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=36.3
Q ss_pred HHhcCCHHHHHHHhCCCchHHHHHHHHHHHHc---CceeEEecCCCccccC
Q psy3760 13 VRQNFNLTEAAKALYTSQPGVSKAIIELEEEL---SIDIFIRHGKRIRGLT 60 (306)
Q Consensus 13 ~~~~~s~~~aA~~l~isq~~~s~~i~~LE~~l---g~~Lf~R~~~~~~~lT 60 (306)
.+.- ++..-|+.++||.+|+.+-|+++++.| |.+|-.+. +|+ .++
T Consensus 106 ~~~i-si~~Lae~l~VS~sTi~~DLk~i~~~L~~y~L~L~~~~-~G~-~i~ 153 (485)
T 3sqn_A 106 TKEL-VTTSFLSTSGVSYETLKRHIKKMNQALRDFHLTIQLTT-MTI-QLI 153 (485)
T ss_dssp CSEE-EHHHHHHHHTCCHHHHHHHHHHHHHHHGGGTCEEEECS-SEE-EEE
T ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCeEEEEEC-CeE-EEE
Confidence 3444 899999999999999999999999766 78886654 665 454
No 494
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=65.17 E-value=17 Score=27.53 Aligned_cols=30 Identities=10% Similarity=0.273 Sum_probs=24.5
Q ss_pred CCCcEEEEEeCChhHHHHHHHcCCeeEEEEc
Q psy3760 119 FPKVKLSLLQGNPKQITEMIRNDQADIAIVT 149 (306)
Q Consensus 119 ~p~~~i~~~~~~~~~~~~~l~~~~~Di~i~~ 149 (306)
+|+.++.... +..+.++.|.+|++|.++..
T Consensus 157 ~~~~~~~~~~-~~~~~~~~l~~G~vDa~~~~ 186 (268)
T 3qax_A 157 QPGICVRSFD-STLEVIMEVRYGKSPVAVLE 186 (268)
T ss_dssp STTCCEEEES-CHHHHHHHHHTTSSSEEEEC
T ss_pred CCCceEEecC-CHHHHHHHHHcCCCCEEEec
Confidence 7777766543 57789999999999999985
No 495
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=65.13 E-value=21 Score=29.33 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=42.6
Q ss_pred CCCcEEEEeccc---chhhhhHHHHHHHHHhCCCcEEEEEeCChh---HHHHHHHcCC-eeEEEEc
Q psy3760 91 DTGNLTIATTHT---QARYALPKIIKEFTIQFPKVKLSLLQGNPK---QITEMIRNDQ-ADIAIVT 149 (306)
Q Consensus 91 ~~~~l~I~~~~~---~~~~~l~~~l~~~~~~~p~~~i~~~~~~~~---~~~~~l~~~~-~Di~i~~ 149 (306)
...+|++-...+ -....+..++..|.++||+++|++...+.+ .+...+.+|+ -|+....
T Consensus 6 ~~~tl~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~kl~~~~~sg~~pDv~~~~ 71 (405)
T 3i3v_A 6 DPDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKEADVVMVN 71 (405)
T ss_dssp -CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHHHTTCCCSEEEEC
T ss_pred CCcEEEEEeecCCCchhhHHHHHHHHHHHHHCCCcEEEEEECcHHHHHHHHHHHHCCCCCcEEEec
Confidence 345788875432 125688999999999999999999876543 3666677765 6999883
No 496
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=65.06 E-value=11 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=20.0
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAII 38 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i~ 38 (306)
+.|.|-...|+.+|+|++++|+-.+
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3445888999999999999987543
No 497
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=64.64 E-value=9.9 Score=25.77 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=18.4
Q ss_pred HhcCCHHHHHHHhCCCchHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSK 35 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~ 35 (306)
+.|.|-...|+.+|+|++++|+
T Consensus 82 ~~glsq~~la~~~g~s~~~i~~ 103 (133)
T 3o9x_A 82 KLSLTQKEASEIFGGGVNAFSR 103 (133)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHH
Confidence 3456888999999999999886
No 498
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=64.44 E-value=6.4 Score=29.81 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=31.3
Q ss_pred CHHHHHHHhCCCch-HHHHHHHHHHHHcCceeEEecCCCccccCH
Q psy3760 18 NLTEAAKALYTSQP-GVSKAIIELEEELSIDIFIRHGKRIRGLTK 61 (306)
Q Consensus 18 s~~~aA~~l~isq~-~~s~~i~~LE~~lg~~Lf~R~~~~~~~lT~ 61 (306)
|-..-|..+|+|++ ++||.+++|+++ | ++.+.++.+ .+.+
T Consensus 171 t~~~lA~~lG~sr~etvsR~l~~l~~~-g--lI~~~~~~i-~I~d 211 (238)
T 2bgc_A 171 TMQELGYSSGIAHSSAVSRIISKLKQE-K--VIVYKNSCF-YVQN 211 (238)
T ss_dssp CHHHHHHHTTCCCHHHHHHHHHHHHHT-T--SEEEETTEE-EESC
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHHC-C--CEEecCCEE-EEeC
Confidence 55778999999995 999999999885 4 456666776 4544
No 499
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=63.91 E-value=18 Score=23.85 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=44.4
Q ss_pred HhcCCHHHHHHHhCCCchHHHHHHHHHHHHcCcee-EEecC----CCccccCHhHHHHHHHHHHHHHHHHH
Q psy3760 14 RQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDI-FIRHG----KRIRGLTKPGQAILRSIEIIMQEIEG 79 (306)
Q Consensus 14 ~~~~s~~~aA~~l~isq~~~s~~i~~LE~~lg~~L-f~R~~----~~~~~lT~~G~~l~~~a~~il~~~~~ 79 (306)
+.- |+-+-.+.-|+...|+-..|+.|. ++|.++ |+++| -|..+++.=|-.--..+..-++.+.+
T Consensus 32 ~~~-nvp~L~~~TGmPRRTiQd~I~aL~-elgI~~~FvQ~G~R~n~GyY~I~dWG~idk~Wv~~~~~~i~~ 100 (117)
T 3ke2_A 32 ARH-NLLSLGKLTGMPRRTLQDAIASFA-DIGIEVEFVQDGERHNAGYYRIRTWGPISSAWMDTHVDEVKS 100 (117)
T ss_dssp SCC-CHHHHHHHHCCCHHHHHHHHHTGG-GGTCEEEEECCTTCCSCCEEEEEECTTBCHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHCCCHhHHHHHHHHhh-hCCeEEEEEeccccCCCccEEEeecCccCHHHHHHHHHHHHH
Confidence 344 888999999999999999999999 999987 45443 13336777665444444444444333
No 500
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.57 E-value=7.5 Score=26.04 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCceeEEecC
Q psy3760 35 KAIIELEEELSIDIFIRHG 53 (306)
Q Consensus 35 ~~i~~LE~~lg~~Lf~R~~ 53 (306)
+.|++|+++-|+++..|..
T Consensus 39 ~tiK~I~~eTG~kI~I~G~ 57 (119)
T 2yqr_A 39 SYLQHIQIETGAKVFLRGK 57 (119)
T ss_dssp HHHHHHHHHHCCEEEEESB
T ss_pred hHHHHHHHHHCCEEEEecC
Confidence 5789999999999999943
Done!