Your job contains 1 sequence.
>psy3760
MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT
KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP
KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL
LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI
GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI
NKILNN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3760
(306 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SO_2649 - symbol:SO_2649 "cys regulon transcript... 642 6.9e-63 1
UNIPROTKB|P0A9F3 - symbol:cysB "CysB" species:83333 "Esch... 625 4.3e-61 1
UNIPROTKB|Q9KQU1 - symbol:VC_1907 "Cys regulon transcript... 622 9.0e-61 1
TIGR_CMR|VC_1907 - symbol:VC_1907 "cys regulon transcript... 622 9.0e-61 1
TIGR_CMR|CPS_1200 - symbol:CPS_1200 "cys regulon transcri... 600 1.9e-58 1
UNIPROTKB|Q47083 - symbol:cbl species:83333 "Escherichia ... 598 3.2e-58 1
TIGR_CMR|BA_2439 - symbol:BA_2439 "transcriptional regula... 278 2.6e-24 1
TIGR_CMR|GSU_2817 - symbol:GSU_2817 "transcriptional regu... 214 1.6e-17 1
TIGR_CMR|GSU_0266 - symbol:GSU_0266 "transcriptional regu... 211 9.7e-17 1
UNIPROTKB|P27111 - symbol:cynR "CynR DNA-binding transcri... 210 1.2e-16 1
TIGR_CMR|BA_1916 - symbol:BA_1916 "transcriptional regula... 204 9.6e-16 1
TIGR_CMR|GSU_2787 - symbol:GSU_2787 "transcriptional regu... 203 3.2e-15 1
TIGR_CMR|BA_3543 - symbol:BA_3543 "transcriptional regula... 201 5.1e-15 1
TIGR_CMR|BA_5454 - symbol:BA_5454 "transcriptional regula... 199 9.5e-15 1
UNIPROTKB|P20668 - symbol:gltC "HTH-type transcriptional ... 195 4.5e-14 1
TIGR_CMR|SO_1916 - symbol:SO_1916 "transcriptional regula... 192 9.9e-14 1
UNIPROTKB|Q47141 - symbol:hcaR species:83333 "Escherichia... 186 7.2e-13 1
TIGR_CMR|CPS_2055 - symbol:CPS_2055 "transcriptional regu... 184 1.5e-12 1
TIGR_CMR|CHY_2398 - symbol:CHY_2398 "transcriptional regu... 183 2.5e-12 1
TIGR_CMR|SPO_0659 - symbol:SPO_0659 "transcriptional regu... 181 4.3e-12 1
TIGR_CMR|BA_5406 - symbol:BA_5406 "transcriptional regula... 179 6.3e-12 1
TIGR_CMR|CHY_1527 - symbol:CHY_1527 "transcriptional regu... 177 1.2e-11 1
TIGR_CMR|CHY_0628 - symbol:CHY_0628 "transcriptional regu... 171 6.9e-11 1
TIGR_CMR|SPO_3677 - symbol:SPO_3677 "transcriptional regu... 171 7.9e-11 1
UNIPROTKB|Q9KRL9 - symbol:VC_1617 "Transcriptional regula... 170 8.5e-11 1
TIGR_CMR|VC_1617 - symbol:VC_1617 "transcriptional regula... 170 8.5e-11 1
TIGR_CMR|CHY_0013 - symbol:CHY_0013 "transcriptional regu... 162 8.4e-10 1
TIGR_CMR|CPS_4662 - symbol:CPS_4662 "substrate-binding tr... 161 1.0e-09 1
TIGR_CMR|BA_1733 - symbol:BA_1733 "transcriptional regula... 160 1.5e-09 1
TIGR_CMR|SO_4542 - symbol:SO_4542 "transcriptional regula... 159 1.9e-09 1
TIGR_CMR|CBU_1476 - symbol:CBU_1476 "hydrogen peroxide-in... 159 2.3e-09 1
TIGR_CMR|CPS_2850 - symbol:CPS_2850 "substrate-binding tr... 157 3.1e-09 1
TIGR_CMR|CHY_0059 - symbol:CHY_0059 "transcriptional regu... 157 3.6e-09 1
UNIPROTKB|P52696 - symbol:ybhD "predicted DNA-binding tra... 157 4.2e-09 1
TIGR_CMR|GSU_2523 - symbol:GSU_2523 "transcriptional regu... 156 4.5e-09 1
UNIPROTKB|P03030 - symbol:lysR "LysR DNA-binding transcri... 156 5.2e-09 1
TIGR_CMR|BA_3271 - symbol:BA_3271 "transcriptional regula... 153 9.3e-09 1
UNIPROTKB|P0ACR4 - symbol:yeiE "LYSR-type transcriptional... 153 9.7e-09 1
TIGR_CMR|SO_0843 - symbol:SO_0843 "transcriptional regula... 153 9.7e-09 1
TIGR_CMR|CHY_2575 - symbol:CHY_2575 "transcriptional regu... 153 1.1e-08 1
UNIPROTKB|Q48Q24 - symbol:oxyR "Oxidative stress regulato... 153 1.1e-08 1
TIGR_CMR|SPO_2238 - symbol:SPO_2238 "transcriptional regu... 152 1.5e-08 1
TIGR_CMR|BA_0208 - symbol:BA_0208 "transcriptional regula... 151 1.6e-08 1
UNIPROTKB|P77744 - symbol:abgR "predicted DNA-binding tra... 150 2.4e-08 1
UNIPROTKB|Q9KNU4 - symbol:VC_2636 "Transcriptional regula... 148 4.0e-08 1
TIGR_CMR|VC_2636 - symbol:VC_2636 "transcriptional regula... 148 4.0e-08 1
TIGR_CMR|CPS_1346 - symbol:CPS_1346 "transcriptional regu... 148 4.2e-08 1
UNIPROTKB|Q9KPP2 - symbol:VC2324 "Transcriptional regulat... 147 5.6e-08 1
TIGR_CMR|VC_2324 - symbol:VC_2324 "transcriptional regula... 147 5.6e-08 1
UNIPROTKB|Q9KQ97 - symbol:VC_2103 "Transcriptional regula... 145 8.6e-08 1
TIGR_CMR|VC_2103 - symbol:VC_2103 "transcriptional regula... 145 8.6e-08 1
TIGR_CMR|SO_3757 - symbol:SO_3757 "rubisco operon transcr... 146 9.3e-08 1
TIGR_CMR|BA_3729 - symbol:BA_3729 "als operon regulatory ... 145 9.4e-08 1
UNIPROTKB|Q4K3Q5 - symbol:oxyR "Oxidative stress regulato... 144 1.3e-07 1
TIGR_CMR|BA_3170 - symbol:BA_3170 "transcriptional regula... 143 1.5e-07 1
UNIPROTKB|P0ACQ4 - symbol:oxyR species:83333 "Escherichia... 135 1.5e-06 1
TIGR_CMR|BA_4195 - symbol:BA_4195 "transcriptional regula... 130 5.0e-06 1
TIGR_CMR|CPS_4699 - symbol:CPS_4699 "substrate-binding tr... 127 1.1e-05 1
UNIPROTKB|Q6SJC1 - symbol:pcaQ "Putative LysR type transc... 127 1.2e-05 1
TIGR_CMR|SPO_A0047 - symbol:SPO_A0047 "pca operon transcr... 127 1.2e-05 1
TIGR_CMR|BA_3557 - symbol:BA_3557 "transcriptional regula... 126 1.3e-05 1
UNIPROTKB|O33175 - symbol:oxyS "OxyS protein" species:177... 126 1.7e-05 1
UNIPROTKB|Q9KVI5 - symbol:VC_0161 "Transcriptional activa... 125 2.0e-05 1
TIGR_CMR|VC_0161 - symbol:VC_0161 "transcriptional activa... 125 2.0e-05 1
TIGR_CMR|SO_0817 - symbol:SO_0817 "transcriptional activa... 125 2.0e-05 1
TIGR_CMR|BA_2435 - symbol:BA_2435 "transcriptional regula... 124 2.4e-05 1
UNIPROTKB|P33634 - symbol:yfiE "predicted DNA-binding tra... 124 2.4e-05 1
TIGR_CMR|SPO_A0387 - symbol:SPO_A0387 "transcriptional re... 124 2.7e-05 1
TIGR_CMR|SPO_0241 - symbol:SPO_0241 "transcriptional regu... 124 2.8e-05 1
TIGR_CMR|CPS_4718 - symbol:CPS_4718 "hydrogen peroxide-in... 123 3.4e-05 1
TIGR_CMR|SO_1259 - symbol:SO_1259 "transcriptional regula... 123 3.4e-05 1
TIGR_CMR|SPO_A0177 - symbol:SPO_A0177 "hydrogen peroxide-... 120 3.7e-05 1
TIGR_CMR|CPS_3863 - symbol:CPS_3863 "transcriptional regu... 121 6.0e-05 1
TIGR_CMR|CPS_3421 - symbol:CPS_3421 "transcriptional regu... 118 0.00013 1
UNIPROTKB|P0A9F9 - symbol:metR "MetR" species:83333 "Esch... 118 0.00014 1
TIGR_CMR|SPO_0832 - symbol:SPO_0832 "transcriptional regu... 115 0.00025 1
UNIPROTKB|Q47005 - symbol:nac "Nac DNA-binding transcript... 115 0.00029 1
UNIPROTKB|Q9KRD6 - symbol:VC_1706 "Transcriptional activa... 114 0.00038 1
TIGR_CMR|VC_1706 - symbol:VC_1706 "transcriptional activa... 114 0.00038 1
UNIPROTKB|P0ACR7 - symbol:yfeR "predicted DNA-binding tra... 114 0.00039 1
TIGR_CMR|SO_1046 - symbol:SO_1046 "transcriptional regula... 113 0.00046 1
UNIPROTKB|P77559 - symbol:ynfL "predicted DNA-binding tra... 113 0.00046 1
TIGR_CMR|SPO_A0446 - symbol:SPO_A0446 "transcriptional re... 113 0.00047 1
>TIGR_CMR|SO_2649 [details] [associations]
symbol:SO_2649 "cys regulon transcriptional activator"
species:211586 "Shewanella oneidensis MR-1" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0019344 "cysteine biosynthetic
process" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000260068 KO:K13634
OMA:YMYDFIE ProtClustDB:PRK12681 RefSeq:NP_718233.1 HSSP:P45600
ProteinModelPortal:Q8EDU4 GeneID:1170350 KEGG:son:SO_2649
PATRIC:23524923 Uniprot:Q8EDU4
Length = 324
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 120/302 (39%), Positives = 184/302 (60%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L Q R++ E V+ N N++ A+ LYTSQPG+SK R GK + +T
Sbjct: 1 MKLQQLRYIAEVVKHNLNVSATAENLYTSQPGISKQVRMLEDELGIQIFGRSGKHLTHVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
GQ ++ I+ ++E +KK+ +E++ D G L IATT TQARYALP II++F ++P
Sbjct: 61 PAGQQVINIANDILGKVESIKKVSEEYTKPDQGELNIATTDTQARYALPNIIRQFIDRYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
KV L + QG P QI+E AD AI TE + LI +PCY W ++VP DHPL
Sbjct: 121 KVNLHMHQGTPSQISEQAARGDADFAIATEAMHLYSDLIMLPCYHWNRSVVVPKDHPLAT 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
IS+++++ +PL+TY F ++++ F+ L P +V ++D++KTYV L +G+
Sbjct: 181 RTQISIEDLARFPLVTYVFGFDRASEIEKAFNRANLEPRVVFSATSADVLKTYVRLGLGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D N DK+L +I A HLF + +++ ++G++LRSY+Y FI+ +P L R +
Sbjct: 241 GVIASMAIDPNIDKDLVAIDAGHLFAHSTTKIGFRKGSFLRSYMYDFIQHFAPHLTRDVV 300
Query: 301 NK 302
K
Sbjct: 301 EK 302
>UNIPROTKB|P0A9F3 [details] [associations]
symbol:cysB "CysB" species:83333 "Escherichia coli K-12"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IGI] [GO:0008652 "cellular
amino acid biosynthetic process" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0019344 "cysteine biosynthetic
process" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IGI] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931
Pfam:PF03466 GO:GO:0005737 GO:GO:0045892 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:X60293 GO:GO:0019344
HOGENOM:HOG000260068 EMBL:M15041 EMBL:M34332 PIR:A26695
RefSeq:NP_415791.1 RefSeq:YP_489543.1 ProteinModelPortal:P0A9F3
SMR:P0A9F3 DIP:DIP-36048N IntAct:P0A9F3 MINT:MINT-1276319
PRIDE:P0A9F3 EnsemblBacteria:EBESCT00000002900
EnsemblBacteria:EBESCT00000016675 GeneID:12931144 GeneID:945771
KEGG:ecj:Y75_p1249 KEGG:eco:b1275 PATRIC:32117808 EchoBASE:EB0181
EcoGene:EG10184 KO:K13634 OMA:YMYDFIE ProtClustDB:PRK12681
BioCyc:EcoCyc:PD00232 BioCyc:ECOL316407:JW1267-MONOMER
BioCyc:MetaCyc:PD00232 Genevestigator:P0A9F3 Uniprot:P0A9F3
Length = 324
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 120/301 (39%), Positives = 182/301 (60%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L Q R++ E V N N++ A+ LYTSQPG+SK R GK + +T
Sbjct: 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
GQ I+R ++ +++ +K + E + D G+L IATTHTQARYALP +IK F ++P
Sbjct: 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V L + QG+P QI + + AD AI TE L + L+ +PCY W I+V DHPL
Sbjct: 121 RVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAG 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+I+++E++ YPL+TY F+GR +LD F+ LTP IV ++D+IKTYV L +G+
Sbjct: 181 KKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D D +L + A +F + +++ ++ T+LRSY+Y FI+ +P L R +
Sbjct: 241 GVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV 300
Query: 301 N 301
+
Sbjct: 301 D 301
>UNIPROTKB|Q9KQU1 [details] [associations]
symbol:VC_1907 "Cys regulon transcriptional activator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 KO:K13634 ProtClustDB:PRK12681 HSSP:P45600 PIR:E82142
RefSeq:NP_231541.1 ProteinModelPortal:Q9KQU1 SMR:Q9KQU1
DNASU:2613536 GeneID:2613536 KEGG:vch:VC1907 PATRIC:20082858
OMA:MYEFIEH Uniprot:Q9KQU1
Length = 324
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 117/305 (38%), Positives = 186/305 (60%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L Q +++ E V N N++ A+ LYTSQPG+SK R GK + +T
Sbjct: 1 MKLQQLKYIVEVVNHNLNVSATAENLYTSQPGISKQVRLLEDELGIQIFERSGKHLTQVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ I+R I+ +E +K + E + + G L I+TTHTQARYALP++IK FT ++P
Sbjct: 61 PAGEHIVRIATEILSRVESIKAVAAEHTHPEMGTLNISTTHTQARYALPEVIKGFTKRYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V L + QG P Q++E I A+ AI TE L I +PCY W I+VP DHPL
Sbjct: 121 RVSLHMHQGTPTQMSEAIAKGTANFAIATEALHLYQDAIMLPCYHWNRSIVVPKDHPLTK 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+++++++ YPL+TY F+GR +LD F+ +TP +V ++D+IKTYV + +G+
Sbjct: 181 KEQVTIEDLAAYPLVTYVFGFTGRSELDSAFNRVGMTPKVVFTATDADVIKTYVRMGIGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D +D +L +I ASH+F + + + ++GT+LRSY++ F++ +P L R +
Sbjct: 241 GVIASMAVDKKQDTDLVAIDASHIFSASTTSIGFRRGTFLRSYMFDFMERFAPHLTRPVV 300
Query: 301 NKILN 305
+ ++
Sbjct: 301 EQAIS 305
>TIGR_CMR|VC_1907 [details] [associations]
symbol:VC_1907 "cys regulon transcriptional activator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 KO:K13634 ProtClustDB:PRK12681 HSSP:P45600 PIR:E82142
RefSeq:NP_231541.1 ProteinModelPortal:Q9KQU1 SMR:Q9KQU1
DNASU:2613536 GeneID:2613536 KEGG:vch:VC1907 PATRIC:20082858
OMA:MYEFIEH Uniprot:Q9KQU1
Length = 324
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 117/305 (38%), Positives = 186/305 (60%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L Q +++ E V N N++ A+ LYTSQPG+SK R GK + +T
Sbjct: 1 MKLQQLKYIVEVVNHNLNVSATAENLYTSQPGISKQVRLLEDELGIQIFERSGKHLTQVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ I+R I+ +E +K + E + + G L I+TTHTQARYALP++IK FT ++P
Sbjct: 61 PAGEHIVRIATEILSRVESIKAVAAEHTHPEMGTLNISTTHTQARYALPEVIKGFTKRYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V L + QG P Q++E I A+ AI TE L I +PCY W I+VP DHPL
Sbjct: 121 RVSLHMHQGTPTQMSEAIAKGTANFAIATEALHLYQDAIMLPCYHWNRSIVVPKDHPLTK 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+++++++ YPL+TY F+GR +LD F+ +TP +V ++D+IKTYV + +G+
Sbjct: 181 KEQVTIEDLAAYPLVTYVFGFTGRSELDSAFNRVGMTPKVVFTATDADVIKTYVRMGIGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D +D +L +I ASH+F + + + ++GT+LRSY++ F++ +P L R +
Sbjct: 241 GVIASMAVDKKQDTDLVAIDASHIFSASTTSIGFRRGTFLRSYMFDFMERFAPHLTRPVV 300
Query: 301 NKILN 305
+ ++
Sbjct: 301 EQAIS 305
>TIGR_CMR|CPS_1200 [details] [associations]
symbol:CPS_1200 "cys regulon transcription activator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0019344 "cysteine biosynthetic
process" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR HOGENOM:HOG000260068 KO:K13634
OMA:YMYDFIE ProtClustDB:PRK12681 RefSeq:YP_267943.1
ProteinModelPortal:Q486S2 SMR:Q486S2 STRING:Q486S2 GeneID:3523074
KEGG:cps:CPS_1200 PATRIC:21465645
BioCyc:CPSY167879:GI48-1281-MONOMER Uniprot:Q486S2
Length = 324
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 117/304 (38%), Positives = 180/304 (59%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L Q R++ E + N N++ A +L+TSQPG+SK R GK + +T
Sbjct: 1 MKLQQLRYIVEVLNNNLNVSATADSLFTSQPGISKQVRMLEDELGIQIFGRSGKHLTHVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ GQ ++ I+ ++EG+K + +E + D G L IATTHTQARYALP +I+ F ++
Sbjct: 61 EAGQDVIDIATQILSKVEGIKAVAREHTQPDEGKLRIATTHTQARYALPDVIQGFIKRYS 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
KV L + QG P QI++ +AD AI TE L + L+ +PCY W IIV DHPL
Sbjct: 121 KVSLHMSQGTPAQISDAAAKGEADFAIATESLHLYNDLVMLPCYHWNRSIIVRPDHPLAK 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+I++ +I+ Y L+TY F+GR +LD F P I ++D+IKTYV L +G+
Sbjct: 181 KQNITIVDIAKYSLVTYVFGFTGRSELDAAFDAAGAKPKIAFTATDADVIKTYVRLGVGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D D +L I ASHLF + +++ ++G++LR+Y+Y FI+ +P L + +
Sbjct: 241 GVIASMAIDERIDSDLVVIDASHLFNASTTKIGFRRGSFLRAYMYDFIERFAPHLTKDIV 300
Query: 301 NKIL 304
+ +
Sbjct: 301 TRAM 304
>UNIPROTKB|Q47083 [details] [associations]
symbol:cbl species:83333 "Escherichia coli K-12"
[GO:0045883 "positive regulation of sulfur utilization"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:L31639
PIR:C64963 RefSeq:NP_416492.1 RefSeq:YP_490231.1 PDB:2FYI
PDBsum:2FYI ProteinModelPortal:Q47083 SMR:Q47083 DIP:DIP-9248N
IntAct:Q47083 PRIDE:Q47083 EnsemblBacteria:EBESCT00000003101
EnsemblBacteria:EBESCT00000017539 GeneID:12933119 GeneID:946502
KEGG:ecj:Y75_p1949 KEGG:eco:b1987 PATRIC:32119305 EchoBASE:EB4012
EcoGene:EG14264 HOGENOM:HOG000260068 KO:K13635 OMA:FEANTVW
ProtClustDB:PRK12679 BioCyc:EcoCyc:G7071-MONOMER
BioCyc:ECOL316407:JW1966-MONOMER EvolutionaryTrace:Q47083
Genevestigator:Q47083 GO:GO:0045883 Uniprot:Q47083
Length = 316
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 119/302 (39%), Positives = 190/302 (62%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MN Q + +REA RQ++NLTE A L+TSQ GVS+ R GKR+ G+T
Sbjct: 1 MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+PG+A+L E I+ E ++++ F+ +G LTIATTHTQARY+LP++IK F FP
Sbjct: 61 EPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V+L L+QG P++I +++N +ADI I +E LS +L++ P ++W + ++VP DHPL
Sbjct: 121 EVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQ 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
++ ++L+ I+ +PLITY +GR ++D F+ + L IVL +SD+IKTYV L +GI
Sbjct: 181 ISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGI 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G++A + ++NL + HLF + +K+G R+YV+ F++L + L+ + I
Sbjct: 241 GLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDI 300
Query: 301 NK 302
+
Sbjct: 301 KR 302
>TIGR_CMR|BA_2439 [details] [associations]
symbol:BA_2439 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233514 HSSP:Q9WXC7
RefSeq:NP_844815.1 RefSeq:YP_019080.1 RefSeq:YP_028532.1
ProteinModelPortal:Q81QI6 DNASU:1088513
EnsemblBacteria:EBBACT00000011461 EnsemblBacteria:EBBACT00000018618
EnsemblBacteria:EBBACT00000024363 GeneID:1088513 GeneID:2814377
GeneID:2852848 KEGG:ban:BA_2439 KEGG:bar:GBAA_2439 KEGG:bat:BAS2271
OMA:RPILEIS ProtClustDB:CLSK916629
BioCyc:BANT260799:GJAJ-2337-MONOMER
BioCyc:BANT261594:GJ7F-2419-MONOMER Uniprot:Q81QI6
Length = 300
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 83/292 (28%), Positives = 134/292 (45%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
+ L Q + AV + + T+AA+ L SQP +S+ R GK+I LT
Sbjct: 4 IELRQLEYFL-AVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKI-SLT 61
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ +L + I EIE + ++ + G+LTI + T Y LP I F +P
Sbjct: 62 EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDK-LISIPCYQWEYVIIVPLDHPLL 179
++LS+L I E + ++ DI I L DK +IS P Y+ E +I+VP H L
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGIT--FLPVQDKEIISAPLYESELIIVVPTGHQLA 179
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
N +S+ E+ NYPLI +F + P +LE + + V MG
Sbjct: 180 KHNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVSKGMG 239
Query: 240 IGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLL 291
I ++ D ++KN+++I + T +I ++ Y+ + FIK L
Sbjct: 240 ITVLPKPYIDFLQNKNIQAIKIENPTPTIEIGLIYRKDKYMCAATREFIKQL 291
>TIGR_CMR|GSU_2817 [details] [associations]
symbol:GSU_2817 "transcriptional regulator, LysR family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000233518 RefSeq:NP_953861.1
ProteinModelPortal:Q749C6 DNASU:2686872 GeneID:2686872
KEGG:gsu:GSU2817 PATRIC:22028475 OMA:RELEYGR ProtClustDB:CLSK763234
BioCyc:GSUL243231:GH27-2823-MONOMER Uniprot:Q749C6
Length = 296
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 72/293 (24%), Positives = 135/293 (46%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
++L Q + E V Q ++T+A+ L+ +Q VS A R GKR+ L
Sbjct: 3 ISLRQLE-IFEKVAQCEHVTQASTQLFLTQSAVSMAIAELERVAGAPLFERRGKRLL-LN 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ IL E +++ +++ ++ + G L + + T Y LP++I EF+ +P
Sbjct: 61 DRGRKILPEAEEVVRRTRAIEQFLEDSAGEPRGVLNVGASTTIGNYILPELIAEFSGNYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
K+ L GN QI + + D+ ++ E + S L S P + E V++V HP
Sbjct: 121 DAKVLLTIGNAHQIEHALEKGELDLGLI-EGIPHSGVLDSTPWKKDELVVVVGKGHPWAC 179
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+ S++ + N P I + R + + + ++ I LE +++ IK +E +G+
Sbjct: 180 DGAASVEMLGNAPWIMRETGSGTREVFEGAMAGKGISFSISLELGHTEAIKKAIEAGLGV 239
Query: 241 GIIASIAFDSNRDKN-LRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLS 292
G ++ IA + + L I+ T+S + +Q Y + +F LL+
Sbjct: 240 GCLSRIAVNRELEHGWLVEIACPLDLKRTLS-LQTRQSGYKTRLLCAFWSLLN 291
>TIGR_CMR|GSU_0266 [details] [associations]
symbol:GSU_0266 "transcriptional regulator, LysR family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000233514
ProtClustDB:CLSK743269 RefSeq:NP_951327.1 ProteinModelPortal:Q74GI0
DNASU:2687505 GeneID:2687505 KEGG:gsu:GSU0266 PATRIC:22023276
OMA:TLEVRRF BioCyc:GSUL243231:GH27-309-MONOMER Uniprot:Q74GI0
Length = 307
Score = 211 (79.3 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 62/253 (24%), Positives = 116/253 (45%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M++ Q +F VR + T+AA+ L +QP VS A R +++ LT
Sbjct: 1 MDIRQLQFFVAIVRFG-SFTKAAERLRVAQPAVSMAMKRLEEELDLVLFNRQERKV-SLT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ LR E I++E+ + +E G + + + Y P+II++F+ ++P
Sbjct: 59 AEGEIFLRHAEKILEEVASTETEMEELRGLAKGEVRVGIPPMMSAYFFPQIIRDFSNRYP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
++ LS+ +I +MI + + D+ ++ P D L + E ++ VP +H L
Sbjct: 119 ELHLSVSGEGASKIQKMILDGELDMGVIAGASFP-DTLELRRFLREEVIVCVPKNHHLAE 177
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+ + L+E + +PLI Y + R + L P I ET ++K+ + MGI
Sbjct: 178 MERLPLQEFARHPLIFYKEGYYLRELVFDVMRGAGLNPAIRFETNLYTLVKSLIRKGMGI 237
Query: 241 GIIASIAFDSNRD 253
+ + + + D
Sbjct: 238 SVFLRMVVEEDDD 250
>UNIPROTKB|P27111 [details] [associations]
symbol:cynR "CynR DNA-binding transcriptional repressor"
species:83333 "Escherichia coli K-12" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931
Pfam:PF03466 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:U73857 EMBL:M93053 PIR:A41900
RefSeq:NP_414872.3 RefSeq:YP_488632.1 PDB:2HXR PDB:3HFU PDBsum:2HXR
PDBsum:3HFU ProteinModelPortal:P27111 SMR:P27111 DIP:DIP-9364N
EnsemblBacteria:EBESCT00000004844 EnsemblBacteria:EBESCT00000017065
GeneID:12930820 GeneID:945001 KEGG:ecj:Y75_p0327 KEGG:eco:b0338
PATRIC:32115809 EchoBASE:EB1391 EcoGene:EG11421
HOGENOM:HOG000233514 KO:K11921 OMA:SADFITR ProtClustDB:PRK11242
BioCyc:EcoCyc:PD00291 BioCyc:ECOL316407:JW5894-MONOMER
EvolutionaryTrace:P27111 Genevestigator:P27111 Uniprot:P27111
Length = 299
Score = 210 (79.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 66/252 (26%), Positives = 118/252 (46%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIE 71
AV ++ + T AA AL+ SQP +S+ R G+ IR LT G+ +
Sbjct: 11 AVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIR-LTDAGEVWRQYAS 69
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP 131
+QE+ K+ + + G+L IA T T Y + ++ +F ++P + L L + +
Sbjct: 70 RALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQ 129
Query: 132 KQITEMIRNDQADIAIV-TEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS 190
++I +M+ D+ D+ I + SP +L +IP ++V HPL + ++L +
Sbjct: 130 EKIEDMLCRDELDVGIAFAPVHSP--ELEAIPLLTESLALVVAQHHPLAVHEQVALSRLH 187
Query: 191 NYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL--RMGIGIIASIAF 248
+ L+ F+ R ++D L P +V+E NS I +EL R + + A
Sbjct: 188 DEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEA-NS--ISAVLELIRRTSLSTLLPAAI 244
Query: 249 DSNRDKNLRSIS 260
+ D L++IS
Sbjct: 245 ATQHD-GLKAIS 255
>TIGR_CMR|BA_1916 [details] [associations]
symbol:BA_1916 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233514
RefSeq:NP_844325.1 RefSeq:YP_018560.1 RefSeq:YP_028042.1
ProteinModelPortal:Q81RX1 DNASU:1086137
EnsemblBacteria:EBBACT00000008133 EnsemblBacteria:EBBACT00000017189
EnsemblBacteria:EBBACT00000021009 GeneID:1086137 GeneID:2819761
GeneID:2849865 KEGG:ban:BA_1916 KEGG:bar:GBAA_1916 KEGG:bat:BAS1778
OMA:DMFKQAN ProtClustDB:CLSK887894
BioCyc:BANT260799:GJAJ-1847-MONOMER
BioCyc:BANT261594:GJ7F-1920-MONOMER Uniprot:Q81RX1
Length = 289
Score = 204 (76.9 bits), Expect = 9.6e-16, P = 9.6e-16
Identities = 59/260 (22%), Positives = 133/260 (51%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M + Q + + + + + T+AA+ L +QP VS A R ++ +T
Sbjct: 1 MTITQLQVLIKTIELG-SFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVT 59
Query: 61 KPGQAILRSIEIIMQEIEGLKK-IGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
G IL I I+ +E +++ + E ++ G + I + + + + LPK+I F ++
Sbjct: 60 DVGSRILVHIREILNGVEKIEQEVAME-KGHEVGTIRIGSFPSASAHFLPKMINHFKEKY 118
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
P +++ L +G K++ + + + DI IV IL P+ ++ +P + + V+I+ DHPL
Sbjct: 119 PNLEVVLCEGTIKEVEDWLVSRVVDIGIV--IL-PNKEMEIVPLTKGKMVVILREDHPLC 175
Query: 180 LLNSISLKEISNYPLITYDLSFSGRI-KLDREFSLQKLTPYIVLETINSDIIKTYVELRM 238
N+++++++ N P+I + I + ++ ++ Y++ T+ + + ++ +
Sbjct: 176 KKNAVTIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVI-STVTTAL--NMIQEGL 232
Query: 239 GIGIIASIAFDSNRDKNLRS 258
GI I+A ++ +N KN+++
Sbjct: 233 GIAILAELSL-TNLPKNVQT 251
>TIGR_CMR|GSU_2787 [details] [associations]
symbol:GSU_2787 "transcriptional regulator, LysR family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000233514 RefSeq:NP_953831.1
ProteinModelPortal:Q749F6 GeneID:2686970 KEGG:gsu:GSU2787
PATRIC:22028411 OMA:KEGYHLR ProtClustDB:CLSK743269
BioCyc:GSUL243231:GH27-2760-MONOMER Uniprot:Q749F6
Length = 305
Score = 203 (76.5 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 62/253 (24%), Positives = 106/253 (41%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M + Q RF E R+ + T AA+ L+ +QP +S A R ++I LT
Sbjct: 1 MEIRQLRFFIEIARK-LSFTRAAETLHIAQPALSTAIRKLEDELGLTLFNRSDRKI-ALT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ LR I+ ++ ++ + G + + T + Y PKII F + P
Sbjct: 59 AEGETFLRHATAILDDVRKAEREMADIRGLTAGEVRVGVTPMLSTYFFPKIIAGFKKRHP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
++LS+ + +I M+ + D+ +V P D ++ E V VP DHPL
Sbjct: 119 ALQLSVYGDSAARIQRMVAGGELDMGVVAGGAIPEDLEYHHLLHE-EIVACVPADHPLAG 177
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
S+ E+ PLI + + R +D + P V E+ +I+ V +GI
Sbjct: 178 RKSVPFAELLREPLILFKEGYHLRELIDEAAAHVGEAPRAVFESNLFSLIRNLVLEGVGI 237
Query: 241 GIIASIAFDSNRD 253
+ + +D
Sbjct: 238 SFLLRMVVADEKD 250
>TIGR_CMR|BA_3543 [details] [associations]
symbol:BA_3543 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233521 HSSP:Q9WXC7
RefSeq:NP_845819.1 RefSeq:YP_020177.1 RefSeq:YP_029542.1
ProteinModelPortal:Q81YK0 DNASU:1084565
EnsemblBacteria:EBBACT00000010743 EnsemblBacteria:EBBACT00000014366
EnsemblBacteria:EBBACT00000021525 GeneID:1084565 GeneID:2814998
GeneID:2850955 KEGG:ban:BA_3543 KEGG:bar:GBAA_3543 KEGG:bat:BAS3285
OMA:KQCVIAD ProtClustDB:CLSK888007
BioCyc:BANT260799:GJAJ-3347-MONOMER
BioCyc:BANT261594:GJ7F-3457-MONOMER Uniprot:Q81YK0
Length = 297
Score = 201 (75.8 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 61/247 (24%), Positives = 108/247 (43%)
Query: 18 NLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIEIIMQEI 77
N T+ AK L +Q V+ R GKR+ LT+ G R ++ ++
Sbjct: 17 NFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLF-LTEAG----RKFQLYADKM 71
Query: 78 EGLKKIGKEFSAYD---TGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP-KQ 133
GL K D G LTI +Q Y LP I+K F QFP++KL + K
Sbjct: 72 IGLSNEAKMAVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIKLIFKPAHSNKD 131
Query: 134 ITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYP 193
E + + D+A + + D L P + E ++ H LL S+S+K++
Sbjct: 132 AKEQLMEGKVDLAFILDECKTEDALHVEPLMKEELKVVAAPGHRLLEQTSVSIKDLEKET 191
Query: 194 LITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFDSN-R 252
L+ +L S R + F + + P +E ++ + IK + +G+ ++ +I + + R
Sbjct: 192 LLLTELGCSYRTLFEELFRAKDIYPANKIEFVSVEAIKQCIIADLGVAVLPAIVVEKDMR 251
Query: 253 DKNLRSI 259
+ ++ +
Sbjct: 252 EGTIKEL 258
>TIGR_CMR|BA_5454 [details] [associations]
symbol:BA_5454 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233514 HSSP:Q9WXC7
RefSeq:NP_847622.1 RefSeq:YP_022117.1 RefSeq:YP_031308.1
ProteinModelPortal:Q81WZ6 DNASU:1085067
EnsemblBacteria:EBBACT00000011945 EnsemblBacteria:EBBACT00000014402
EnsemblBacteria:EBBACT00000023604 GeneID:1085067 GeneID:2819181
GeneID:2848747 KEGG:ban:BA_5454 KEGG:bar:GBAA_5454 KEGG:bat:BAS5069
OMA:RQITLNS ProtClustDB:CLSK917638
BioCyc:BANT260799:GJAJ-5144-MONOMER
BioCyc:BANT261594:GJ7F-5321-MONOMER Uniprot:Q81WZ6
Length = 294
Score = 199 (75.1 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 62/253 (24%), Positives = 116/253 (45%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L Q ++ + R ++T+AA+ L+ +QP +SK R G++I L
Sbjct: 1 MELLQLKYFQTVARLE-HMTKAAEELHIAQPSLSKTIARLEKDLGVPLFDRQGRQIT-LN 58
Query: 61 KPGQAILRSIEIIMQEI-EGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
G+ L+ +E I E+ EG ++I K+ + ++T+A + + LP++I F ++
Sbjct: 59 PFGKVFLKRVERIFHELSEGEREI-KDLADLQQSSITLAVSIPRI---LPELIGSFLLEH 114
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
P V+ + + + N + D I + + +++I P E ++VP H L
Sbjct: 115 PNVRFQQFLASTPSMKRQLDNIEIDFCI-SSVPIEGEEIIWEPLITEEIFLVVPSGHRLS 173
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQK-LTPYIVLETINSDIIKTYVELRM 238
SI L E+ + P I+ + + R D EF + TP+I E +I ++ +
Sbjct: 174 GRESIYLHEVKDEPFISMNTGYGFRHLTD-EFCKEAGFTPHIAFEVDEPTVISDLIKQGL 232
Query: 239 GIGIIASIAFDSN 251
GI + S+ N
Sbjct: 233 GIAFVPSLTLLKN 245
>UNIPROTKB|P20668 [details] [associations]
symbol:gltC "HTH-type transcriptional regulator GltC"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IMP] InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039
PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677 eggNOG:COG0583
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 GO:GO:0006537 EMBL:AL009126
GenomeReviews:AL009126_GR HOGENOM:HOG000233514 EMBL:M28509
EMBL:AF006720 PIR:A69635 RefSeq:NP_389728.2
ProteinModelPortal:P20668 SMR:P20668 IntAct:P20668
EnsemblBacteria:EBBACT00000001217 GeneID:940104 KEGG:bsu:BSU18460
PATRIC:18975531 GenoList:BSU18460 KO:K09681 ProtClustDB:CLSK873227
BioCyc:BSUB:BSU18460-MONOMER Uniprot:P20668
Length = 300
Score = 195 (73.7 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 60/248 (24%), Positives = 108/248 (43%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L Q R+ E V + +++EAA L+ +Q +S+ R G+ I+ LT
Sbjct: 1 MELRQLRYFME-VAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFEREGRNIK-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ L ++ M+ I+ K+ E+ G + I + A LP +I F ++P
Sbjct: 59 PIGKEFLIHVKTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEEYP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V+ L QG+ K + E +RN D+A++ + + + + + +VPL+HPL
Sbjct: 119 HVEFLLRQGSYKFLIEAVRNRDIDLALLGPVPTNFSDITGKILFTEKIYALVPLNHPLAK 178
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
++ L ++ N + + F R P + E + D IK V MG+
Sbjct: 179 QKTVHLIDLRNDQFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGEDLDAIKGLVSAGMGV 238
Query: 241 GIIASIAF 248
++ F
Sbjct: 239 TLLPESTF 246
>TIGR_CMR|SO_1916 [details] [associations]
symbol:SO_1916 "transcriptional regulator, LysR family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000233514 HSSP:Q9WXC7
RefSeq:NP_717523.1 ProteinModelPortal:Q8EFQ3 GeneID:1169679
KEGG:son:SO_1916 PATRIC:23523467 OMA:ITEDCAK ProtClustDB:CLSK906498
Uniprot:Q8EFQ3
Length = 293
Score = 192 (72.6 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 66/260 (25%), Positives = 121/260 (46%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXR----HGKRI 56
M++ Q + + +A+ + T AAK L +QP +S++ R H K +
Sbjct: 1 MDIRQLKHL-DALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHL 59
Query: 57 RGLTKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFT 116
LT G + + +I+++I+ + + + +G + IA + LP + F
Sbjct: 60 -ALTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFR 118
Query: 117 IQFPKVKLSLLQGNPKQITEMIRNDQADIAIVT-EILSPS-DKLISIPCYQWEYVIIVPL 174
Q+P++KLSL +G + M++ ++ DIAI+T + L P D + I + + VI +
Sbjct: 119 HQYPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPDFDSQLLI---REQMVIAMGA 175
Query: 175 DHPLLLLNSISLKEISNYPLITYDLSFSGRIK-LDREFSLQKLTPYIVLETINSDIIKTY 233
+HPL L ++SL + ++ L+ + + R L + L K P I ET ++IK
Sbjct: 176 EHPLAELPAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGK-KPNIAFETNLINLIKQI 234
Query: 234 VELRMGIGIIASIAFDSNRD 253
V GI + +A D
Sbjct: 235 VSQGFGITSVLEMAISPKDD 254
>UNIPROTKB|Q47141 [details] [associations]
symbol:hcaR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS;IDA]
InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931
Pfam:PF03466 GO:GO:0045892 GO:GO:0045893 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233514 EMBL:Z37966
PIR:H65030 RefSeq:NP_417032.1 RefSeq:YP_490765.1
ProteinModelPortal:Q47141 SMR:Q47141 IntAct:Q47141
EnsemblBacteria:EBESCT00000002980 EnsemblBacteria:EBESCT00000017350
GeneID:12932580 GeneID:947000 KEGG:ecj:Y75_p2490 KEGG:eco:b2537
PATRIC:32120471 EchoBASE:EB3228 EcoGene:EG13455 KO:K05817
OMA:GSVERHI ProtClustDB:PRK09906 BioCyc:EcoCyc:G7331-MONOMER
BioCyc:ECOL316407:JW2521-MONOMER Genevestigator:Q47141
Uniprot:Q47141
Length = 296
Score = 186 (70.5 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 60/245 (24%), Positives = 110/245 (44%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L R+ AV Q N T AA+ L+TSQP +S R +++ LT
Sbjct: 1 MELRHLRYF-VAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKV-ALT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ L+ I+++ E K ++ D LTI + LPK++ F ++ P
Sbjct: 59 AAGECFLQDALAILEQAENAKLRARKIVQEDR-QLTIGFVPSAEVNLLPKVLPMFRLRQP 117
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTE-ILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
+ L+ Q E IR + D+ ++ + SP + + + V+++P+DHPL
Sbjct: 118 DTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLEL--FDEPLVVVLPVDHPLA 175
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIK--LDREFSLQKLTPYIVLETINSDIIKTYVELR 237
I+ ++ ++ D +SG + + F+ + P IV + ++I+ T +
Sbjct: 176 HEKEITAAQLDGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNIV--QVATNILVTMNLVG 233
Query: 238 MGIGI 242
MG+G+
Sbjct: 234 MGLGV 238
>TIGR_CMR|CPS_2055 [details] [associations]
symbol:CPS_2055 "transcriptional regulator, LysR family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 Prosite:PS00018
GO:GO:0003677 InterPro:IPR018247 eggNOG:COG0583 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000233514 RefSeq:YP_268783.1 ProteinModelPortal:Q483I4
STRING:Q483I4 GeneID:3520042 KEGG:cps:CPS_2055 PATRIC:21467233
OMA:SHAEEIN BioCyc:CPSY167879:GI48-2125-MONOMER Uniprot:Q483I4
Length = 302
Score = 184 (69.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 66/297 (22%), Positives = 131/297 (44%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKP 62
L Q R+ AV + N+TEA++ L+ SQP +S A RH + LT
Sbjct: 6 LKQLRYF-VAVADSGNVTEASENLFISQPAISNAISQLEETLNTQLLIRHHAKGVSLTPA 64
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G+ ++ ++ E + + S +G + + + PK+I+ FT +P +
Sbjct: 65 GEEMVSHCRNLLSHAEEINAQMTQHSTLISGTINVGCYASLGPIYAPKLIQGFTTLYPDI 124
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLN 182
L +GN ++I E + + + ++A++ + L+ + ++ S + +++ + HPL
Sbjct: 125 NFKLFEGNIEEINEALISGKIEMALMYD-LNNNGQIESTELAKISPHVLLSIKHPLAKRK 183
Query: 183 SISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGI 242
I+L + + PLI DL S + F P+I T + +++++ V G +
Sbjct: 184 KINLMTLQDEPLILLDLPNSSKY-FQSLFEQYDKHPFIKHRTKSIEMLRSLVANGEGYAL 242
Query: 243 I-ASIAFDSNRD-KNLRSISASHLFGTTISRVIIK-QGTYLRSYVYSFIKLLSPKLN 296
+ A + + D L S+ + + +S VI K G L +F++ N
Sbjct: 243 MNAKVKSTTCFDGSELISVPLAD-YAKPLSVVISKVSGIKLPKRCEAFLEFCIKNFN 298
>TIGR_CMR|CHY_2398 [details] [associations]
symbol:CHY_2398 "transcriptional regulator, LysR family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG0583
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233518
RefSeq:YP_361195.1 ProteinModelPortal:Q3A9I9 STRING:Q3A9I9
GeneID:3727889 KEGG:chy:CHY_2398 PATRIC:21277857
ProtClustDB:CLSK747929 BioCyc:CHYD246194:GJCN-2397-MONOMER
Uniprot:Q3A9I9
Length = 313
Score = 183 (69.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 66/309 (21%), Positives = 128/309 (41%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKP 62
LH + + V + N++ AAK L+ SQP +S R K +R LTK
Sbjct: 2 LHSQLVIFKVVAETKNISTAAKRLHMSQPAISLQIQSLENEVGVKLFERSNKGVR-LTKA 60
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G+ + ++ I+ +I ++ ++ G L I T T Y LPK++ F +P++
Sbjct: 61 GEIFYQKVQDIIDKIHEAYELARDAGGESKGKLYIGATLTIGEYVLPKLLAYFYKLYPEI 120
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLN 182
++ + N I + DI ++ + + + ++ E V++VP H
Sbjct: 121 EMRVKIANTDTIYHELVEKTIDIGLIEGTIDDEELKVE-KFWEDELVVVVPYHHIWGSKE 179
Query: 183 SISLKEISNYPLITYDLSFSGRIKLD---REFSLQKLTPYIVLETINSDIIKTYVELRMG 239
+ + E+ +I + R L+ +E L + +E ++ IK V +G
Sbjct: 180 RLPVAELLKERIILREEGSGTRKVLEIALKELGLDLNDLNVTMEFSSTQAIKEVVAAGLG 239
Query: 240 IGIIASIAFDSNRDKNLRSISASHLFGTTISR---VIIKQGTYLRSYVYSFIKLLSPKLN 296
+ II+ + RD +L+ + I R ++ + T FI LL N
Sbjct: 240 VTIISELTV--RRDCDLKMFKKLSILEAPIRRPLSFVLTKSTAHEKQKQLFINLLR---N 294
Query: 297 RKFINKILN 305
+ + K+++
Sbjct: 295 NELVAKLIS 303
>TIGR_CMR|SPO_0659 [details] [associations]
symbol:SPO_0659 "transcriptional regulator, LysR family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 HOGENOM:HOG000233514 RefSeq:YP_165914.1
ProteinModelPortal:Q5LVP1 GeneID:3193567 KEGG:sil:SPO0659
PATRIC:23374585 OMA:DYRESES ProtClustDB:CLSK767234 Uniprot:Q5LVP1
Length = 310
Score = 181 (68.8 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 72/294 (24%), Positives = 125/294 (42%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKP 62
L Q R+V EA ++ ++ +AA+ L SQ ++ A R R T
Sbjct: 6 LKQLRYV-EAADRSGSIAKAAEELNISQSSITAAIDALESGLGFDLFVRTPARGIRTTAS 64
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G+ L I + ++ G + IA T A LP +++ T FP +
Sbjct: 65 GRDALGLIRRFIHRSRQFEEELSSLGGLTRGTVRIACYATAAPSFLPPVLRAITEGFPDL 124
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIV-TEILSPSDKLISIPCYQWEYVIIVPLDHPLLLL 181
+ LL+GN +I E + +AD+A +E+LS ++ P + +VP+D PL
Sbjct: 125 SIQLLEGNMARIMEFLDEGEADVAFTYSEVLS--ERCDFEPLFDAPPYAMVPVDDPLAGQ 182
Query: 182 NSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIG 241
S + E++ P++ DL + R F LTP I T +S+I++ V G
Sbjct: 183 ASTTFAELATRPMVMLDLPHT-RDYFVGMFEALGLTPNIAHSTRSSEIVRALVAGGFGFS 241
Query: 242 IIASIAFDSNRDKN-LRSISASHLFGTTISRVIIKQGTY----LRSYVYSFIKL 290
++ D ++ R + S + T + + G +R++V S I+L
Sbjct: 242 LLNIRPVDYRESESRYRIVPISGVPHTPVFGIATMAGAQQTRMVRAFVQSCIEL 295
>TIGR_CMR|BA_5406 [details] [associations]
symbol:BA_5406 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233518
RefSeq:NP_847579.1 RefSeq:YP_022069.1 RefSeq:YP_031264.1
ProteinModelPortal:Q81X37 IntAct:Q81X37 DNASU:1084988
EnsemblBacteria:EBBACT00000012272 EnsemblBacteria:EBBACT00000017485
EnsemblBacteria:EBBACT00000021450 GeneID:1084988 GeneID:2819319
GeneID:2852192 KEGG:ban:BA_5406 KEGG:bar:GBAA_5406 KEGG:bat:BAS5025
OMA:STLQDQV ProtClustDB:CLSK917620
BioCyc:BANT260799:GJAJ-5100-MONOMER
BioCyc:BANT261594:GJ7F-5276-MONOMER Uniprot:Q81X37
Length = 297
Score = 179 (68.1 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 62/248 (25%), Positives = 111/248 (44%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MN+ + V Q + + AA+ L SQPGVS R K ++ +T
Sbjct: 1 MNVDILKIFVTVVEQK-HFSRAAELLNLSQPGVSMHIRNLENEFGTTLIQRSPKHVQ-VT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G + + ++ E K+ E TG L I + T Y LPKI+ ++ + P
Sbjct: 59 EAGNILYIHAKQMLSLYEDAKQEINELHNVVTGTLRIGASFTIGEYLLPKILADYANENP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCY-QWEYVIIVPLDHPLL 179
V++ N + + + +R++Q DI +V + +D + + + Q E ++VP +HPLL
Sbjct: 119 HVEVHTFISNTEDVLQSLRSNQIDIGLVEGQVVYAD--VDVETFMQDEMKLVVPPNHPLL 176
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQ---KLTPYIVLETINSDIIKTYVEL 236
N I+ + + + + + R DR F Q K+ + +I S +K V
Sbjct: 177 RTNKINERTLQDQVWVLRESGSGTRAYSDR-FIHQHHLKMKRFFTFSSIQS--VKEAVSA 233
Query: 237 RMGIGIIA 244
+GI I++
Sbjct: 234 GLGIAILS 241
>TIGR_CMR|CHY_1527 [details] [associations]
symbol:CHY_1527 "transcriptional regulator, LysR family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG0583
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233518
RefSeq:YP_360359.1 ProteinModelPortal:Q3ABX5 STRING:Q3ABX5
GeneID:3727956 KEGG:chy:CHY_1527 PATRIC:21276183 OMA:ILNIGAS
BioCyc:CHYD246194:GJCN-1526-MONOMER Uniprot:Q3ABX5
Length = 301
Score = 177 (67.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 65/275 (23%), Positives = 125/275 (45%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M + F+ V + +L++A K L +QP ++K R+ K I+ LT
Sbjct: 1 MKVEYFKTFITVVNEK-SLSKAGKLLNLTQPAITKHLQSLEEYFNTILLERNVKGIK-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G + + + I++ +E ++ G L I ++ +Y LP ++ + + +P
Sbjct: 59 DDGALLYKYAQEILKILEEAEQNISGNKENPKGILNIGASNIPGQYLLPLLLGRYNLAYP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADI-AIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
+VK++L + + I + D+ A+ +EI +P +L +P Y+ E V I+P +HPL
Sbjct: 119 QVKVNLEISDTGDVVAKILDGIYDVGAVGSEIKNP--RLEFVPFYKDELVFILPANHPLT 176
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDR---EFSLQKLTPYIVLETINSDIIKTYVEL 236
+ ++ PLI + R+ L++ F + + IV+E ++ + T VE
Sbjct: 177 QKEVLEPDDLLKIPLIWREKGSGTRMFLEKALKNFGISEKKLKIVMELGSNQAVLTAVEG 236
Query: 237 RMGIGIIASIAFDSNRDKNLRSISASHLFGTTISR 271
+G + IA N K L +S + G + R
Sbjct: 237 GLGGAFCSEIAV-RNATK-LGLVSTHRIKGLALQR 269
>TIGR_CMR|CHY_0628 [details] [associations]
symbol:CHY_0628 "transcriptional regulator, LysR family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG0583
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233518
RefSeq:YP_359484.1 ProteinModelPortal:Q3AEF0 GeneID:3726721
KEGG:chy:CHY_0628 PATRIC:21274393 OMA:CKAVGEY
ProtClustDB:CLSK744814 BioCyc:CHYD246194:GJCN-628-MONOMER
Uniprot:Q3AEF0
Length = 301
Score = 171 (65.3 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 63/268 (23%), Positives = 117/268 (43%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MNL+Q V Q ++++AAK ++ SQP +S R + I LT
Sbjct: 1 MNLNQLEAFCNIVEQG-SISKAAKLMHLSQPALSTQIAALENQLQVKLMERTNRGIE-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ +L + I ++ L + + + L+I T YALP I F ++
Sbjct: 59 EAGETLLYYAKRICNLVKNLNEEIERLKNLEEEELSIGAASTIGGYALPCSIYIFQEKYE 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
++ L N +++ E + + Q DI +V + ++ + S Y E V++VP ++
Sbjct: 119 SARIKLTIMNTEKVIEALLDRQIDIGLVESNIESNEFISSHLTYD-ELVLVVPNNNSYKN 177
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY---IVLETINSDIIKTYVELR 237
++L E+ P I + R +++ + + L IV+E + D IK VE
Sbjct: 178 KEILTLDELRTLPFIIREKGSGIRQTIEKALAEKGLNISDLNIVMEVNSIDAIKVAVESG 237
Query: 238 MGIGIIASIAFDSN-RDKNLRSISASHL 264
G+ ++ A R +L+SI +
Sbjct: 238 KGVSLLPRFAVKKELRTGSLKSIKVKDI 265
>TIGR_CMR|SPO_3677 [details] [associations]
symbol:SPO_3677 "transcriptional regulator, LysR family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 HOGENOM:HOG000233514 RefSeq:YP_168872.1
ProteinModelPortal:Q5LM86 GeneID:3193521 KEGG:sil:SPO3677
PATRIC:23380841 OMA:AVARHEN ProtClustDB:CLSK767405 Uniprot:Q5LM86
Length = 311
Score = 171 (65.3 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 58/243 (23%), Positives = 105/243 (43%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
+ L Q ++ AV + ++ AA L S P +S A R + LT
Sbjct: 4 LTLRQLEYL-VAVGETGSIVRAADRLNVSSPSISSAITQLEEKLAISLFVRQHAQGLSLT 62
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ GQ + +++ + I + S G L I T A+ LP++ + F FP
Sbjct: 63 RGGQRVFEQARLVLSGAREIANIAADISESTRGPLAIGCLLTFAQLVLPRMRRGFESGFP 122
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V++ + N +I ++ + D+A+ ++ P+D L I + ++ +H L
Sbjct: 123 DVRIVQKELNQAEIFNALQRSEIDVALTYDMDIPTD-LKFIGLVRLHPFALLHAEHELAN 181
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDR-EFSLQKLTPYIVLETINSDIIKTYVELRMG 239
+IS+++++ P+I DL S L E S QK P IV T + ++++ V G
Sbjct: 182 KPAISIEDLAGLPMILLDLPISADYFLSLFETSQQK--PRIVERTRDMAVMRSMVGNAFG 239
Query: 240 IGI 242
I
Sbjct: 240 YSI 242
>UNIPROTKB|Q9KRL9 [details] [associations]
symbol:VC_1617 "Transcriptional regulator, LysR family"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 HSSP:Q9WXC7 ProtClustDB:CLSK874456 PIR:C82179
RefSeq:NP_231257.1 ProteinModelPortal:Q9KRL9 DNASU:2613873
GeneID:2613873 KEGG:vch:VC1617 PATRIC:20082294 OMA:MESKQLK
Uniprot:Q9KRL9
Length = 296
Score = 170 (64.9 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 63/292 (21%), Positives = 124/292 (42%)
Query: 1 MNLHQFR-FVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGL 59
M + Q R FV A ++F L AA+ L+ +QP +S + R +++ L
Sbjct: 8 MEVRQLRHFVTVAEWESFTL--AAQQLHIAQPALSISIKKFEQQLGVTLFKRDERKV-AL 64
Query: 60 TKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
T G+ +L + I+Q++ + E G + + Y P+II F F
Sbjct: 65 THEGEVLLEHAKRILQQVNDAQLAVDELKGVVKGEVRLGAPSMMGSYFFPQIIMAFKSHF 124
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
P +K+++++ + I M+ + + DI ++ P D L + P + V +V +H L
Sbjct: 125 PNLKMTVIEAGTQSIRRMLLSGELDIGVILNHDLPDD-LAADPLLSSQMVAVVGKNHELA 183
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
++ E + L+ + + R +D+ K T ET +I + V+
Sbjct: 184 ERRHLTFAEFFEHELVMFKPGYFHRDFIDKVCREHKFTADFSFETNLLPMILSIVKHEYA 243
Query: 240 IGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLL 291
I + + SN + +++I ++ K+G YL + +FI+ +
Sbjct: 244 ITALLELV-TSN-EPEVKAIPFEPPVWLDLALAWRKEG-YLSNADRTFIEFV 292
>TIGR_CMR|VC_1617 [details] [associations]
symbol:VC_1617 "transcriptional regulator, LysR family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 HSSP:Q9WXC7 ProtClustDB:CLSK874456 PIR:C82179
RefSeq:NP_231257.1 ProteinModelPortal:Q9KRL9 DNASU:2613873
GeneID:2613873 KEGG:vch:VC1617 PATRIC:20082294 OMA:MESKQLK
Uniprot:Q9KRL9
Length = 296
Score = 170 (64.9 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 63/292 (21%), Positives = 124/292 (42%)
Query: 1 MNLHQFR-FVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGL 59
M + Q R FV A ++F L AA+ L+ +QP +S + R +++ L
Sbjct: 8 MEVRQLRHFVTVAEWESFTL--AAQQLHIAQPALSISIKKFEQQLGVTLFKRDERKV-AL 64
Query: 60 TKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
T G+ +L + I+Q++ + E G + + Y P+II F F
Sbjct: 65 THEGEVLLEHAKRILQQVNDAQLAVDELKGVVKGEVRLGAPSMMGSYFFPQIIMAFKSHF 124
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
P +K+++++ + I M+ + + DI ++ P D L + P + V +V +H L
Sbjct: 125 PNLKMTVIEAGTQSIRRMLLSGELDIGVILNHDLPDD-LAADPLLSSQMVAVVGKNHELA 183
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
++ E + L+ + + R +D+ K T ET +I + V+
Sbjct: 184 ERRHLTFAEFFEHELVMFKPGYFHRDFIDKVCREHKFTADFSFETNLLPMILSIVKHEYA 243
Query: 240 IGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLL 291
I + + SN + +++I ++ K+G YL + +FI+ +
Sbjct: 244 ITALLELV-TSN-EPEVKAIPFEPPVWLDLALAWRKEG-YLSNADRTFIEFV 292
>TIGR_CMR|CHY_0013 [details] [associations]
symbol:CHY_0013 "transcriptional regulator, LysR family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG0583
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233518
RefSeq:YP_358885.1 ProteinModelPortal:Q3AG49 STRING:Q3AG49
GeneID:3727857 KEGG:chy:CHY_0013 PATRIC:21273227 OMA:MRITRTI
ProtClustDB:CLSK717835 BioCyc:CHYD246194:GJCN-13-MONOMER
Uniprot:Q3AG49
Length = 297
Score = 162 (62.1 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 58/250 (23%), Positives = 114/250 (45%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MN +Q R V + + +EAA+ L+ SQP +S R KR+ LT
Sbjct: 1 MNRNQLEIFR-VVAEKKSFSEAARLLHISQPAISMHIQALEEYYGTKLLDRTTKRVT-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ + + ++ ++ ++ + + G L + + T + LP ++ F ++P
Sbjct: 59 PAGEILYKYTLHLLSLMDKAQRDISQAAGIIKGKLILGASLTIGGHVLPPLLSSFYRKYP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V +++ N +++ E + + D+ V ++ + + E V++V +HPL
Sbjct: 119 DVNITMEIMNTEKVLERVSDLTLDLGFVEGEVTTGELHVEALARD-ELVVVVAANHPLAG 177
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDRE------FSLQKLTPYIVLETINSDIIKTYV 234
IS +E++ PL+ + SG K+ E F L +L IV+E +++ IK V
Sbjct: 178 RGRISWEELATLPLVMREPG-SGTRKVIEERLQAAGFKLPELK--IVMELGSTEAIKGAV 234
Query: 235 ELRMGIGIIA 244
E +G I++
Sbjct: 235 EAGLGAAILS 244
>TIGR_CMR|CPS_4662 [details] [associations]
symbol:CPS_4662 "substrate-binding transcriptional
regulator, LysR family" species:167879 "Colwellia psychrerythraea
34H" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR000847
Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466
GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR HOGENOM:HOG000233514 RefSeq:YP_271306.1
ProteinModelPortal:Q47V66 STRING:Q47V66 GeneID:3520640
KEGG:cps:CPS_4662 PATRIC:21472147 OMA:QINIHEA
ProtClustDB:CLSK768138 BioCyc:CPSY167879:GI48-4668-MONOMER
Uniprot:Q47V66
Length = 293
Score = 161 (61.7 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 57/241 (23%), Positives = 103/241 (42%)
Query: 1 MNLHQFR-FVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGL 59
MNL + F + AV NF T AA + +QP ++ A R K L
Sbjct: 1 MNLKRLEYFCQLAVLGNF--TRAAHKIGIAQPALTIAIQKLEQEVGLKLINRAEKNAL-L 57
Query: 60 TKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
T G+ + + ++ + + L+ +E + G + + Y PK++ F ++
Sbjct: 58 TAEGEVLYKLATQLLSQAKQLELELEELKDLEQGTIRFGVSAMMGSYYFPKVLATFKQKY 117
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
PK+K+ L+ + +M+ N + D+A+V S + +L + E V + HPL
Sbjct: 118 PKIKMHLVDQGTAALEKMLLNGELDLALVRSD-SENPQLRYTELFNEEVVAAMASSHPLA 176
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
SISL + PL+ + + R + + L I +ET ++ K+ V +G
Sbjct: 177 NEQSISLAQFCQQPLVLFHEGYFLREVISQYSKKNHLALDIRMETNLIELQKSLVRSEVG 236
Query: 240 I 240
I
Sbjct: 237 I 237
>TIGR_CMR|BA_1733 [details] [associations]
symbol:BA_1733 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 RefSeq:NP_844168.1
RefSeq:YP_018374.1 RefSeq:YP_027875.1 ProteinModelPortal:Q81SC7
DNASU:1083759 EnsemblBacteria:EBBACT00000012794
EnsemblBacteria:EBBACT00000015962 EnsemblBacteria:EBBACT00000022201
GeneID:1083759 GeneID:2819309 GeneID:2853094 KEGG:ban:BA_1733
KEGG:bar:GBAA_1733 KEGG:bat:BAS1609 HOGENOM:HOG000087417
OMA:KERIILH ProtClustDB:CLSK916337
BioCyc:BANT260799:GJAJ-1680-MONOMER
BioCyc:BANT261594:GJ7F-1750-MONOMER Uniprot:Q81SC7
Length = 297
Score = 160 (61.4 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 55/264 (20%), Positives = 117/264 (44%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVS-KAXXXXXXXXXXXXXXRHGKRIRGL 59
MNL + V +++ LT A+ L QP ++ R G+ L
Sbjct: 1 MNLLKLEIV-VLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYF--L 57
Query: 60 TKPGQAILR---SIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFT 116
T+ G+A+ I+ +M+E +++ +EF + G +TI ++ A Y LP+I+ +F
Sbjct: 58 TEAGEALHHYACKIDALMKEA---RRVTQEFKDFHKGAITIGASYVPATYLLPEIVYQFQ 114
Query: 117 IQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDH 176
+FP +K++L+ +I M++N + ++ +++ L V+ +H
Sbjct: 115 CEFPNIKITLMVKTAPEIRTMLQNHEINLGVISAAPFDESLLKQTNVMPDTLVLAFSKEH 174
Query: 177 PLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236
++SL++I ++ + + R L + +T +E + + +K ++
Sbjct: 175 HFSKKENVSLQDIEKERILLHRNPSTTRDLLTKWMLAHNITFQSEIELDSLETMKQILKY 234
Query: 237 RMGIGIIASIAFDSNRDKN-LRSI 259
G+ I+ +A + +N LR I
Sbjct: 235 GNGVAFISKLAIEQEVQRNELRYI 258
>TIGR_CMR|SO_4542 [details] [associations]
symbol:SO_4542 "transcriptional regulator, LysR family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR HSSP:Q9WXC7 RefSeq:NP_720059.1
ProteinModelPortal:Q8E8W2 GeneID:1172129 KEGG:son:SO_4542
PATRIC:23528753 HOGENOM:HOG000251516 OMA:SRSIQKM
ProtClustDB:CLSK907697 Uniprot:Q8E8W2
Length = 296
Score = 159 (61.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 47/180 (26%), Positives = 81/180 (45%)
Query: 18 NLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIEIIMQEI 77
N +AA+ L +QP +S++ R G + LT G+ +L + I+Q +
Sbjct: 18 NFQKAAQKLNLAQPSLSRSIQRLEHLLGTELLLR-GSQSTSLTPAGELVLSHSQHILQNV 76
Query: 78 EGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEM 137
E L+K + +G L+I + A L I+ F Q+P + + L G +Q E
Sbjct: 77 ETLRKELQYMQGKSSGYLSIGASPVPANTILGPILGRFFEQYPDIHIDLEVGTWQQQLEK 136
Query: 138 IRNDQADIAIVT---EILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPL 194
+ + + I EI+ + S +E V + HPL L+ ++L++I NYPL
Sbjct: 137 LLRGELTLLITDVEGEIIGHESAIQSFNLPSFEAVFCTRVGHPLTYLDHLTLEDIRNYPL 196
>TIGR_CMR|CBU_1476 [details] [associations]
symbol:CBU_1476 "hydrogen peroxide-inducible genes
activator OxyR" species:227377 "Coxiella burnetii RSA 493"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931
Pfam:PF03466 GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000233514 KO:K04761
RefSeq:NP_820459.1 HSSP:P11721 ProteinModelPortal:Q83BM7
PRIDE:Q83BM7 GeneID:1209386 KEGG:cbu:CBU_1476 PATRIC:17931713
OMA:RCRVAQP ProtClustDB:CLSK914806
BioCyc:CBUR227377:GJ7S-1464-MONOMER Uniprot:Q83BM7
Length = 311
Score = 159 (61.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 61/275 (22%), Positives = 115/275 (41%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MN+ +++ AV + + +AA+ + SQP +S R+ KR+ +T
Sbjct: 1 MNIRDLKYLL-AVADSAHFGKAAEKCFVSQPTLSAQLKKLEEELGVRLFERNNKRVL-IT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
GQ I + +I+QE+E LK + + G + T Y LP I + F + P
Sbjct: 59 PIGQIIAAQVRVILQEVEKLKVLAQNAQDPFAGVFHLGIIPTLGPYLLPIIFEIFKKRLP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
K+ L + + + I ++ + D A++ + + L+ + + + +P HPL
Sbjct: 119 KLNLVVYENKTENILHELQQGRLD-AVILALPVSAPNLVVQELFCEPFYVALPKHHPLAK 177
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL-RMG 239
S++L ++ L+ + G ++ +T + ++T L G
Sbjct: 178 KKSVTLADLEKETLLLLE---EGHCLREQALEACSMTAAKTETGFKATSLETLRHLVAAG 234
Query: 240 IGIIASIAFDSNRDKNLRSISASHLFGTTI-SRVI 273
GI A N +K+ +I + F TI SR I
Sbjct: 235 AGITLLPALSVNAEKSELAIKS---FNATIPSRSI 266
>TIGR_CMR|CPS_2850 [details] [associations]
symbol:CPS_2850 "substrate-binding transcriptional
regulator, LysR family" species:167879 "Colwellia psychrerythraea
34H" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR000847
Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466
GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR HOGENOM:HOG000233514 RefSeq:YP_269555.1
ProteinModelPortal:Q480G4 STRING:Q480G4 DNASU:3522174
GeneID:3522174 KEGG:cps:CPS_2850 PATRIC:21468733 OMA:ANIAMAE
ProtClustDB:CLSK874456 BioCyc:CPSY167879:GI48-2904-MONOMER
Uniprot:Q480G4
Length = 290
Score = 157 (60.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 47/217 (21%), Positives = 93/217 (42%)
Query: 8 FVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAIL 67
FV+ +NF T AA+ L+ +QP +S A R+ +++ LT G+ +L
Sbjct: 9 FVKLVETKNF--TRAAEQLHIAQPALSVAIKKLEQQLDLPLFHRNERKVT-LTHEGEVLL 65
Query: 68 RSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLL 127
+I+Q+I E ++ G + + Y P+I+ F ++P +KL+++
Sbjct: 66 VHARLILQQISDANIAMAELKGFEKGEVKLGVPSMLGSYFFPEILMAFKRKYPNLKLTII 125
Query: 128 QGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLK 187
+ + I +M+ + + D+ ++ P +L + + V +V HPL I +
Sbjct: 126 EAGTQSIRQMLLDGELDLGVIHNEDVPQ-RLETEHLVTSQMVAVVSERHPLASQPYIKFE 184
Query: 188 EISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLET 224
+ L+ + + R +D P I ET
Sbjct: 185 DFFKEDLVMFKAGYFHREFIDEICEKYHFKPKISFET 221
>TIGR_CMR|CHY_0059 [details] [associations]
symbol:CHY_0059 "transcriptional regulator, LysR family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG0583
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233514
RefSeq:YP_358931.1 ProteinModelPortal:Q3AG03 STRING:Q3AG03
GeneID:3726918 KEGG:chy:CHY_0059 PATRIC:21273315 OMA:SITIAIN
ProtClustDB:CLSK923992 BioCyc:CHYD246194:GJCN-59-MONOMER
Uniprot:Q3AG03
Length = 302
Score = 157 (60.3 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 62/305 (20%), Positives = 124/305 (40%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M Q + + N + T AA+ L+ +QP ++ A R +++ LT
Sbjct: 1 MEFRQLEYFYAVSKLN-SFTRAAEQLHVAQPSITIAINNLEQELKVQLFDRSKRKVV-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ L+ +E I+++++ + ++ Y G + + Y PKI K F +P
Sbjct: 59 DEGKLFLQHVEKILKDVKKAQSELEDLKNYKKGVIKLGIPPMIGAYLFPKIFKGFKNAYP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
++L + + + ++ N + D+ ++ + S+ L +P + + V+ V +H
Sbjct: 119 HLELHVREEGSWAMVSLLENGELDLGLII-LPEQSENLCMLPITKDQIVLCVSENHRFSQ 177
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
ISL+++ + I R K+ + +P I+L + + IK V +GI
Sbjct: 178 EKRISLRQLEDEQFILLKEDSYTRHKIIALCNYYGFSPNILLSSCQIETIKELVSNGLGI 237
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
+ + DK + SI TI K R+ +FI + K
Sbjct: 238 TFLMN-GITKKWDK-IVSIQLEEPMNITIGLAWQKDRCLSRA-AQAFIGFVQNYTKSKEF 294
Query: 301 NKILN 305
+I+N
Sbjct: 295 AEIIN 299
>UNIPROTKB|P52696 [details] [associations]
symbol:ybhD "predicted DNA-binding transcriptional
regulator" species:83333 "Escherichia coli K-12" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039
PROSITE:PS50931 Pfam:PF03466 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
EMBL:U27192 eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351
HOGENOM:HOG000233514 PIR:H64812 RefSeq:NP_415289.4
RefSeq:YP_489041.1 ProteinModelPortal:P52696 SMR:P52696
PRIDE:P52696 EnsemblBacteria:EBESCT00000002105
EnsemblBacteria:EBESCT00000016595 GeneID:12932150 GeneID:944869
KEGG:ecj:Y75_p0741 KEGG:eco:b0768 PATRIC:32116737 EchoBASE:EB3019
EcoGene:EG13230 OMA:SCIPTAV ProtClustDB:CLSK879749
BioCyc:EcoCyc:G6398-MONOMER BioCyc:ECOL316407:JW5896-MONOMER
Genevestigator:P52696 Uniprot:P52696
Length = 317
Score = 157 (60.3 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 58/243 (23%), Positives = 111/243 (45%)
Query: 8 FVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAIL 67
FV A +FN AAK L +QP +++ R +++ LTK G+ +L
Sbjct: 11 FVILAESSSFN--NAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVT-LTKAGKRLL 67
Query: 68 -RSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSL 126
+ E+I + E L I ++ +AY G +T+A T Y LP I +F +P +K+ +
Sbjct: 68 PEARELIKKFDETLFNI-RDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRI 126
Query: 127 LQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISL 186
L+ E + +++D I ++ S + P +V+ DHPL +
Sbjct: 127 LEQGTNNCMESVLCNESDFGINMNNVTNSS-IDFTPLVNEPFVLACRRDHPLAKKQLVEW 185
Query: 187 KEISNYPLITYDLSFSGRIKLDREFSLQ--KLTPYIVLETINSDIIKTYVELRMGIGIIA 244
+E+ Y +I S R+ ++++ + + KL + + +++ + VE +GI +
Sbjct: 186 QELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSL--GLVEAGLGISALP 243
Query: 245 SIA 247
+A
Sbjct: 244 GLA 246
>TIGR_CMR|GSU_2523 [details] [associations]
symbol:GSU_2523 "transcriptional regulator, LysR family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931
Pfam:PF03466 GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000233518 RefSeq:NP_953569.1
ProteinModelPortal:Q74A67 DNASU:2685657 GeneID:2685657
KEGG:gsu:GSU2523 PATRIC:22027895 OMA:GRFEEES ProtClustDB:CLSK828871
BioCyc:GSUL243231:GH27-2483-MONOMER Uniprot:Q74A67
Length = 298
Score = 156 (60.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 49/206 (23%), Positives = 92/206 (44%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MNL Q V AV ++ + + A+A + +Q VS+ R + LT
Sbjct: 1 MNLKQLE-VFLAVAESGSFSRGAEATFLTQSTVSQHIAALESEVGVRLLDRTSRGAL-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ +L ++ + K+ + F + L I + A Y +P ++ F + P
Sbjct: 59 EGGKILLEHARKVVAGSREISKVMRRFRGLEEAELRIGGSTIPADYMIPAMLASFLGRHP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V+++LLQG+ + I + I + A++ I+ + P + E +I DHPL
Sbjct: 119 GVQVTLLQGDSRDILDRIEREDAEVGIIGSRFD-EEGFTFTPLGRDEIRLIAAPDHPLAG 177
Query: 181 LNSISLKEISNYPLITYDLSFSGRIK 206
++ L E++N+ + +L SG K
Sbjct: 178 TGAVPLAELANHGFVFRELG-SGTAK 202
>UNIPROTKB|P03030 [details] [associations]
symbol:lysR "LysR DNA-binding transcriptional dual
regulator" species:83333 "Escherichia coli K-12" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0009089 "lysine biosynthetic process via
diaminopimelate" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931
Pfam:PF03466 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:U29581 EMBL:J03732
EMBL:J01614 PIR:A03565 RefSeq:NP_417316.1 RefSeq:YP_491044.1
ProteinModelPortal:P03030 SMR:P03030 DIP:DIP-10135N IntAct:P03030
MINT:MINT-1320169 EnsemblBacteria:EBESCT00000004480
EnsemblBacteria:EBESCT00000017935 GeneID:12933315 GeneID:947311
KEGG:ecj:Y75_p2773 KEGG:eco:b2839 PATRIC:32121096 EchoBASE:EB0546
EcoGene:EG10551 HOGENOM:HOG000233527 OMA:FHAVMTT
ProtClustDB:PRK11013 BioCyc:EcoCyc:PD00360
BioCyc:ECOL316407:JW2807-MONOMER Genevestigator:P03030
Uniprot:P03030
Length = 311
Score = 156 (60.0 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 57/250 (22%), Positives = 114/250 (45%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
+NL + AV +LTEAA L+TSQP VS+ +R+RG
Sbjct: 4 VNLRHIE-IFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKLF----ERVRGRL 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKI---GKEFSAYDTGNLTIATTHTQARYALPKIIKEFTI 117
P LR E + + GL +I + + G L+IA ++ LP++++ F
Sbjct: 59 HPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLPVFSQSFLPQLLQPFLA 118
Query: 118 QFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSD----KLISIPCYQWEYVIIVP 173
++P V L+++ + E + + D+ + + +P+ +L+S+ + V ++P
Sbjct: 119 RYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTERTELLSL-----DEVCVLP 173
Query: 174 LDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTY 233
HPL + ++ + I+ + S R LD+ F+ ++ +++ET ++ +
Sbjct: 174 PGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKRRMIVETHSAASVCAM 233
Query: 234 VELRMGIGII 243
V +GI ++
Sbjct: 234 VRAGVGISVV 243
>TIGR_CMR|BA_3271 [details] [associations]
symbol:BA_3271 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233514 HSSP:Q9WXC7
RefSeq:NP_845569.1 RefSeq:YP_019908.2 RefSeq:YP_029295.1
ProteinModelPortal:Q81ND4 DNASU:1084354
EnsemblBacteria:EBBACT00000010867 EnsemblBacteria:EBBACT00000014323
EnsemblBacteria:EBBACT00000020491 GeneID:1084354 GeneID:2818413
GeneID:2850142 KEGG:ban:BA_3271 KEGG:bar:GBAA_3271 KEGG:bat:BAS3038
OMA:RSHLSIP ProtClustDB:CLSK644185
BioCyc:BANT260799:GJAJ-3100-MONOMER
BioCyc:BANT261594:GJ7F-3203-MONOMER Uniprot:Q81ND4
Length = 290
Score = 153 (58.9 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 52/199 (26%), Positives = 99/199 (49%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M++ + R+ + + LT AA+ L+ +QP +S+ R+G+ + LT
Sbjct: 1 MDIRKLRYFI-VIAEEKQLTRAAQRLHMAQPPLSRQLSLLEQELSVNLFERNGRNML-LT 58
Query: 61 KPGQAI-LRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
+ G+ + +++ II+Q E + +I K+ S G L+I H+ + KI + F +
Sbjct: 59 EEGKILYMKAKNIILQLEETITEI-KDTSEGLRGKLSIGAFHSCIPFLSEKI-RYFQDNY 116
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDK-LISIPCYQWE-YVIIVPLDHP 177
P V L + +G P + E + N ++AI+ +P +K + S C E +V+++P
Sbjct: 117 PNVNLKIWEGGPSYLIEQLENRHIELAILR---TPFNKDVFSSICLSKEPFVLVMPAKWE 173
Query: 178 LLLLN-SISLKEISNYPLI 195
L + I L E+S+ PL+
Sbjct: 174 LYRSHLPIPLTELSHIPLL 192
>UNIPROTKB|P0ACR4 [details] [associations]
symbol:yeiE "LYSR-type transcriptional regulator"
species:83333 "Escherichia coli K-12" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=EXP;IEA;ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:U00007
EMBL:M89774 HOGENOM:HOG000233518 PIR:D64984 RefSeq:NP_416662.1
RefSeq:YP_490396.1 ProteinModelPortal:P0ACR4 SMR:P0ACR4
PRIDE:P0ACR4 EnsemblBacteria:EBESCT00000001792
EnsemblBacteria:EBESCT00000016574 GeneID:12932806 GeneID:946657
KEGG:ecj:Y75_p2119 KEGG:eco:b2157 PATRIC:32119663 EchoBASE:EB2029
EcoGene:EG12105 OMA:RYRRDFP ProtClustDB:PRK10837
BioCyc:EcoCyc:EG12105-MONOMER BioCyc:ECOL316407:JW2144-MONOMER
Genevestigator:P0ACR4 Uniprot:P0ACR4
Length = 293
Score = 153 (58.9 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 60/244 (24%), Positives = 114/244 (46%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
+ L Q E ++ + T+A+ L SQ VS A R GKR+ +
Sbjct: 3 ITLRQLEVFAEVLKSG-STTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLV-VN 60
Query: 61 KPGQAIL-RSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
+ G+ + R++ ++ Q +E ++++ +E D G + I + T Y LP +I + +
Sbjct: 61 EHGRLLYPRALALLEQAVE-IEQLFRE----DNGAIRIYASSTIGNYILPAVIARYRHDY 115
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
P++ + L GN + + + + + + DI + E S ++IS P + E V+ PL
Sbjct: 116 PQLPIELSVGNSQDVMQAVLDFRVDIGFI-EGPCHSTEIISEPWLEDELVVFAAPTSPLA 174
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY-IVLETINSDIIKTYVELRM 238
++L++++ P I + SG ++ L L + + +E NS+ IK V R
Sbjct: 175 R-GPVTLEQLAAAPWILRERG-SGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAV--RH 230
Query: 239 GIGI 242
G+GI
Sbjct: 231 GLGI 234
>TIGR_CMR|SO_0843 [details] [associations]
symbol:SO_0843 "transcriptional regulator, LysR family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000233514 RefSeq:NP_716474.1
ProteinModelPortal:Q8EIJ6 DNASU:1168690 GeneID:1168690
KEGG:son:SO_0843 PATRIC:23521347 OMA:VELQMYE ProtClustDB:CLSK905963
Uniprot:Q8EIJ6
Length = 293
Score = 153 (58.9 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 52/229 (22%), Positives = 101/229 (44%)
Query: 18 NLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIEIIMQEI 77
N T AA+ + +QP +SK R+ +++ LT+ GQ S I+ +
Sbjct: 19 NFTRAAQKCFITQPTLSKIIQRLEESLGETLLIRNNQKVE-LTQAGQLFEHSAREILGQW 77
Query: 78 EGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEM 137
L++ S +G L + + + ++ + ++P V+L + + +
Sbjct: 78 HRLQEDMSNLSGLKSGRLRLGVCPMMSSLIIG-LLTSYRKRYPGVELQMYEYGGFGCEQA 136
Query: 138 IRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITY 197
+ N+ DIA + +LI+ P ++ + +P HPL + +S ++ YP I Y
Sbjct: 137 LLNNSLDIAFTALPTTHETELINQPLTKYPLLACLPEAHPLAAKSYLSWQDFEPYPFILY 196
Query: 198 DLSFS-GRI--KLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGII 243
+ FS ++ +L R+ +Q L I + D + T VE MG+ I+
Sbjct: 197 NEDFSLAKLINRLSRKAGVQ-LN--IAFRSGQWDFLATMVEADMGLAIL 242
>TIGR_CMR|CHY_2575 [details] [associations]
symbol:CHY_2575 "transcriptional regulator, LysR family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG0583
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233518
RefSeq:YP_361368.1 ProteinModelPortal:Q3A916 STRING:Q3A916
GeneID:3726902 KEGG:chy:CHY_2575 PATRIC:21278201
BioCyc:CHYD246194:GJCN-2574-MONOMER Uniprot:Q3A916
Length = 302
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 47/198 (23%), Positives = 92/198 (46%)
Query: 1 MNLHQFR-FVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGL 59
MNL+QF F + A ++F T+AAK ++ +QP +S R ++ L
Sbjct: 1 MNLYQFELFCQIAKVRSF--TKAAKLMHLTQPAISAQVQAMENFYGTKLFERSATGVK-L 57
Query: 60 TKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
T G+ + + + + E E L++ + + I + T +ALP + F ++
Sbjct: 58 TPAGELVYKYAQHFLAEHEKLEREIDNLLGTNAQTIVIGASSTIGNFALPCNVWSFKEKY 117
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVT--EILSPSDKLISIPCYQWEYVIIVPLDHP 177
P+ + + N K++ +M+ D+ D + E P ++ + + + VII + P
Sbjct: 118 PEANIRIEVDNSKKVIDMVMEDKVDFGLAEGPEFTHPDLEVKKVG--ESQVVIITSPELP 175
Query: 178 LLLLNSISLKEISNYPLI 195
L +SI+++E+ PLI
Sbjct: 176 LARQDSITVEELKKLPLI 193
>UNIPROTKB|Q48Q24 [details] [associations]
symbol:oxyR "Oxidative stress regulatory protein OxyR"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006979 "response to oxidative
stress" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0006979
GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:CP000058
GenomeReviews:CP000058_GR HOGENOM:HOG000233514 KO:K04761
RefSeq:YP_272495.1 ProteinModelPortal:Q48Q24 STRING:Q48Q24
GeneID:3555679 KEGG:psp:PSPPH_0190 PATRIC:19969376 OMA:SRTELRI
ProtClustDB:CLSK869278 Uniprot:Q48Q24
Length = 307
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 54/256 (21%), Positives = 114/256 (44%)
Query: 1 MNLHQFRF-VREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGL 59
M L + R+ V A Q+F AA+ + SQP +S R +R L
Sbjct: 1 MTLTELRYIVTLAQEQHFG--HAAERCHVSQPTLSVGVKKLEDELGVLIFERSKSAVR-L 57
Query: 60 TKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
T G+ I+ + ++++ +G++++ + T L + +T Y P +I +
Sbjct: 58 TPVGEGIVAQAQKVLEQAQGIRELAQAGKNQLTAPLKVGAIYTVGPYLFPHLIPQLHRVA 117
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
P++ L + + + + +RN + D I+ + +D ++++P Y + +++P DHP
Sbjct: 118 PQMPLYIEENFTHVLRDKLRNGELDAVIIALPFNEAD-VLTLPLYDEPFSVLMPADHPWT 176
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIK-LDREFSLQKLTP---YIVLETINSDIIKTYVE 235
+I +++ L+ R + L+ +L K + +E+ + + I+ V
Sbjct: 177 QKETIDASALNDKSLLLLGEGHCFRDQVLEACPTLGKGNEGAKHTTVESSSLETIRHMVA 236
Query: 236 LRMGIGIIASIAFDSN 251
+GI I+ A DS+
Sbjct: 237 SGLGISILPLSAVDSH 252
>TIGR_CMR|SPO_2238 [details] [associations]
symbol:SPO_2238 "transcriptional regulator, LysR family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 HOGENOM:HOG000233514 KO:K04761 RefSeq:YP_167464.1
ProteinModelPortal:Q5LR91 GeneID:3193222 KEGG:sil:SPO2238
PATRIC:23377829 OMA:VIRDEMS ProtClustDB:CLSK751582 Uniprot:Q5LR91
Length = 310
Score = 152 (58.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 48/227 (21%), Positives = 103/227 (45%)
Query: 22 AAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIEIIMQEIEGLK 81
AA++L SQP +S R + LT G+ + + I++E+E L
Sbjct: 25 AARSLGISQPSLSLQIAALEKAVGARLLERRRSGLI-LTPEGRDVSEMVARILREVEALT 83
Query: 82 KIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEMIRND 141
TG L + +T T Y LP+++++ Q+P++KL++ G P+ + E +
Sbjct: 84 LYASPMRDNMTGTLRLGSTPTIGPYLLPRVLRQLHRQYPRLKLAIRDGAPRDLVEDLAAG 143
Query: 142 QADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLITYDLSF 201
+ D+ I+T + D + P ++ + V H L + +++ +++ +
Sbjct: 144 RYDL-ILTHLPVSRDDIRVAPLFREPLELAVDPAHRLAGATQVRQADLAGETMLSLSSGY 202
Query: 202 S--GRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASI 246
+ G+++ E + +L+ E + D ++ V L MGI ++ ++
Sbjct: 203 ALHGQVQALCESAGARLSTEF--EGTSLDALRQMVSLGMGITLLPAL 247
>TIGR_CMR|BA_0208 [details] [associations]
symbol:BA_0208 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 RefSeq:NP_842769.1
RefSeq:YP_016817.1 RefSeq:YP_026490.1 HSSP:P54512
ProteinModelPortal:Q81VJ1 DNASU:1086828
EnsemblBacteria:EBBACT00000009585 EnsemblBacteria:EBBACT00000016561
EnsemblBacteria:EBBACT00000019327 GeneID:1086828 GeneID:2817944
GeneID:2851310 KEGG:ban:BA_0208 KEGG:bar:GBAA_0208 KEGG:bat:BAS0205
HOGENOM:HOG000233521 OMA:PAILHAY ProtClustDB:CLSK887634
BioCyc:BANT260799:GJAJ-227-MONOMER
BioCyc:BANT261594:GJ7F-230-MONOMER Uniprot:Q81VJ1
Length = 288
Score = 151 (58.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 69/294 (23%), Positives = 131/294 (44%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L + + Q +++ AAK L Q V+ RH KR LT
Sbjct: 1 MELRDLQIFQSVADQG-SVSSAAKELNYVQSNVTARIKQLENELKTPLFYRH-KRGMTLT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ +L + I+Q+++ LK++ + S +G L I T T + LP I+ + +P
Sbjct: 59 AEGRKMLVYVNKILQDVDELKQVFLD-SETPSGILKIGTVETVS--TLPTILSSYYKSYP 115
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVT-EILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
V LSL G +++ + + Q D A ++ I P LI E +++V +
Sbjct: 116 NVDLSLQAGLTEELIREVLDHQLDGAFISGPIKHP---LIEQYDVSTEKLMLVTQN---- 168
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
+ ++E + PL+ ++ R KL+R + L P ++E + + V L +G
Sbjct: 169 --KTFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETLLNSVALGLG 226
Query: 240 IGIIASIAFDS-NRDKNLRSISASHLFGTTISRVIIKQ-GTYLRSYVYSFIKLL 291
I ++ A ++ + + +G+ IS V I++ +Y+ + + SF+K +
Sbjct: 227 ITLVPQSAVHHLSKAGKVHCHAIPEKYGS-ISTVFIRRKDSYMTNSMRSFLKTI 279
>UNIPROTKB|P77744 [details] [associations]
symbol:abgR "predicted DNA-binding transcriptional
regulator, LYSR-type" species:83333 "Escherichia coli K-12"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;RCA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;RCA] InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039
PROSITE:PS50931 Pfam:PF03466 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 PIR:F64883 RefSeq:NP_415855.1
RefSeq:YP_489609.1 ProteinModelPortal:P77744 SMR:P77744
IntAct:P77744 EnsemblBacteria:EBESCT00000003530
EnsemblBacteria:EBESCT00000018285 GeneID:12933885 GeneID:945831
KEGG:ecj:Y75_p1316 KEGG:eco:b1339 PATRIC:32117956 EchoBASE:EB3136
EcoGene:EG13353 HOGENOM:HOG000233526 KO:K14057 OMA:ITRRDSP
ProtClustDB:PRK09791 BioCyc:EcoCyc:G6671-MONOMER
BioCyc:ECOL316407:JW1333-MONOMER Genevestigator:P77744
Uniprot:P77744
Length = 302
Score = 150 (57.9 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 43/193 (22%), Positives = 86/193 (44%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
+ +HQ R E RQ ++ A++ L SQP +SK+ R K + LT
Sbjct: 5 VKIHQIRAFVEVARQG-SIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVT-LT 62
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G++ + +I++E+ ++ ++ G + I + +R +P +I F Q P
Sbjct: 63 DAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQHP 122
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIP-CYQWEYVIIVPLDHPLL 179
+VK+ +++G + +R + D I T P D + + ++ I HP +
Sbjct: 123 QVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFTFEKLLEKQFAIFCRPGHPAI 182
Query: 180 LLNSISLKEISNY 192
+ S+K++ +Y
Sbjct: 183 --GARSIKQLLDY 193
>UNIPROTKB|Q9KNU4 [details] [associations]
symbol:VC_2636 "Transcriptional regulator, LysR family"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 KO:K04761 OMA:LFDEPMK ProtClustDB:PRK11151
HSSP:P11721 PIR:C82051 RefSeq:NP_232264.1 ProteinModelPortal:Q9KNU4
SMR:Q9KNU4 DNASU:2615653 GeneID:2615653 KEGG:vch:VC2636
PATRIC:20084296 Uniprot:Q9KNU4
Length = 297
Score = 148 (57.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 43/189 (22%), Positives = 81/189 (42%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MN+ F ++ A+ + + +AA+A + SQP +S R +R+ T
Sbjct: 1 MNIRDFEYL-VALADHKHFRKAAEACFVSQPTLSGQIRKLEDEIGTTLLERSSRRVL-FT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G ++ + I+ E++ K + + + TG L I T Y LPKII +FP
Sbjct: 59 EAGLQLVDQAKKILSEVKTFKDMANQQTGAMTGPLHIGFIPTLGPYLLPKIIPTLKERFP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+++L L + Q+ + + D ++ + + I Y I VP DH
Sbjct: 119 ELELYLHEAQTNQLVRQLEEGKLDCLVLASV-EETAPFKEIELYNEVLSIAVPCDHAWAA 177
Query: 181 LNSISLKEI 189
+ + + E+
Sbjct: 178 RDEVDMLEL 186
>TIGR_CMR|VC_2636 [details] [associations]
symbol:VC_2636 "transcriptional regulator, LysR family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 KO:K04761 OMA:LFDEPMK ProtClustDB:PRK11151
HSSP:P11721 PIR:C82051 RefSeq:NP_232264.1 ProteinModelPortal:Q9KNU4
SMR:Q9KNU4 DNASU:2615653 GeneID:2615653 KEGG:vch:VC2636
PATRIC:20084296 Uniprot:Q9KNU4
Length = 297
Score = 148 (57.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 43/189 (22%), Positives = 81/189 (42%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MN+ F ++ A+ + + +AA+A + SQP +S R +R+ T
Sbjct: 1 MNIRDFEYL-VALADHKHFRKAAEACFVSQPTLSGQIRKLEDEIGTTLLERSSRRVL-FT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G ++ + I+ E++ K + + + TG L I T Y LPKII +FP
Sbjct: 59 EAGLQLVDQAKKILSEVKTFKDMANQQTGAMTGPLHIGFIPTLGPYLLPKIIPTLKERFP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+++L L + Q+ + + D ++ + + I Y I VP DH
Sbjct: 119 ELELYLHEAQTNQLVRQLEEGKLDCLVLASV-EETAPFKEIELYNEVLSIAVPCDHAWAA 177
Query: 181 LNSISLKEI 189
+ + + E+
Sbjct: 178 RDEVDMLEL 186
>TIGR_CMR|CPS_1346 [details] [associations]
symbol:CPS_1346 "transcriptional regulator, LysR family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR HOGENOM:HOG000233514 KO:K04761
RefSeq:YP_268089.1 ProteinModelPortal:Q486C6 STRING:Q486C6
GeneID:3521324 KEGG:cps:CPS_1346 PATRIC:21465915 OMA:SAQIMEM
ProtClustDB:CLSK821971 BioCyc:CPSY167879:GI48-1427-MONOMER
Uniprot:Q486C6
Length = 302
Score = 148 (57.2 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 64/304 (21%), Positives = 131/304 (43%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
++L Q + A+ + + +AA+A SQ +S A R+ K++ +T
Sbjct: 2 ISLKQLHYAL-AIEKTLHFKKAAEACNVSQSALSTAITELEKQLGVTVFERNNKQVL-IT 59
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
GQ IL + + E++ L I + ++I T Y LPK++ E QFP
Sbjct: 60 NNGQLILDKAKRVKLELDELLLIAQTNKQPFYSPMSIGVIPTIGPYLLPKVLPEVRKQFP 119
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
KL +++ + E +R + D AI+ + P + L+S +Q ++ + D
Sbjct: 120 SFKLKIIEEQSHILVEKVRTGEIDAAILA-LPFPIEGLMSFNFWQEDFYWVCHKDECPKK 178
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL---R 237
L I+ +E+ L+ L G + + L +S + T V++ +
Sbjct: 179 LQEITSEELEIDKLM---LLKEGHCLKEHALAACSLQNKKQDSDFDSASLHTLVQMVAGK 235
Query: 238 MGIGIIASIAFD--SNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIK-LLSPK 294
+G ++ +A D + + LR++ + G + ++ + Y+R+ + +K + S +
Sbjct: 236 LGTTLVPQMALDQLTYNESELRAVHLNEP-GPHRTIALVIRPNYVRTNELTLLKDIFSQQ 294
Query: 295 LNRK 298
L +K
Sbjct: 295 LTKK 298
>UNIPROTKB|Q9KPP2 [details] [associations]
symbol:VC2324 "Transcriptional regulator, LysR family"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:AE004303
PIR:B82089 RefSeq:NP_231955.1 ProteinModelPortal:Q9KPP2
DNASU:2613120 GeneID:2613120 KEGG:vch:VC2324 PATRIC:20083677
OMA:SHWILRE ProtClustDB:CLSK874760 Uniprot:Q9KPP2
Length = 304
Score = 147 (56.8 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 63/253 (24%), Positives = 108/253 (42%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
++L Q R V + Q+ +LT AA+ L S+ VS A R R+ L
Sbjct: 5 ISLKQLR-VFTTITQHKSLTVAAEVLCLSKAAVSVALSELEKQLGHALFDRVNNRLV-LN 62
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ GQ +L + ++Q + + ++ E TG L I ++ T P +I F P
Sbjct: 63 QEGQKLLPMADELLQRAKDIDRLFAEQQVL-TGKLRIGSSDTIGNQVAPYLISAFRQLHP 121
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVT-EILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
SL N Q+ + + + + DI ++ + L P +LIS Q E II DHPL
Sbjct: 122 HPSQSLFISNSAQVCQKLVDYELDIGLIEGKTLHP--ELISTQFSQDEMCIICAPDHPLA 179
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYI-----VLETINSDIIKTYV 234
+ + + + + + SG REF L+ + P I E ++ + V
Sbjct: 180 QQERLVMSDFEHSDWVLREAG-SG----SREFFLRVIAPRIEHWIEAFELNTTEALINSV 234
Query: 235 ELRMGIGIIASIA 247
+G+G ++ +A
Sbjct: 235 SSGLGLGCLSRLA 247
>TIGR_CMR|VC_2324 [details] [associations]
symbol:VC_2324 "transcriptional regulator, LysR family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:AE004303
PIR:B82089 RefSeq:NP_231955.1 ProteinModelPortal:Q9KPP2
DNASU:2613120 GeneID:2613120 KEGG:vch:VC2324 PATRIC:20083677
OMA:SHWILRE ProtClustDB:CLSK874760 Uniprot:Q9KPP2
Length = 304
Score = 147 (56.8 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 63/253 (24%), Positives = 108/253 (42%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
++L Q R V + Q+ +LT AA+ L S+ VS A R R+ L
Sbjct: 5 ISLKQLR-VFTTITQHKSLTVAAEVLCLSKAAVSVALSELEKQLGHALFDRVNNRLV-LN 62
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ GQ +L + ++Q + + ++ E TG L I ++ T P +I F P
Sbjct: 63 QEGQKLLPMADELLQRAKDIDRLFAEQQVL-TGKLRIGSSDTIGNQVAPYLISAFRQLHP 121
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVT-EILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
SL N Q+ + + + + DI ++ + L P +LIS Q E II DHPL
Sbjct: 122 HPSQSLFISNSAQVCQKLVDYELDIGLIEGKTLHP--ELISTQFSQDEMCIICAPDHPLA 179
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYI-----VLETINSDIIKTYV 234
+ + + + + + SG REF L+ + P I E ++ + V
Sbjct: 180 QQERLVMSDFEHSDWVLREAG-SG----SREFFLRVIAPRIEHWIEAFELNTTEALINSV 234
Query: 235 ELRMGIGIIASIA 247
+G+G ++ +A
Sbjct: 235 SSGLGLGCLSRLA 247
>UNIPROTKB|Q9KQ97 [details] [associations]
symbol:VC_2103 "Transcriptional regulator, LysR family"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 PIR:F82117 RefSeq:NP_231735.1
ProteinModelPortal:Q9KQ97 DNASU:2613359 GeneID:2613359
KEGG:vch:VC2103 PATRIC:20083235 OMA:SAQAWIN ProtClustDB:CLSK2749731
Uniprot:Q9KQ97
Length = 292
Score = 145 (56.1 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 52/247 (21%), Positives = 115/247 (46%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M++ R+ E V Q + T+A++ L+ +QP +SK R G+R LT
Sbjct: 1 MDIRALRYFVELVNQQ-SFTKASERLFVTQPTISKMIRNLEQELEQPLLHREGRRF-WLT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ + + + I+ +++ L + + G+L + + ++ +++ +P
Sbjct: 59 EAGEIVYQRAQQILTQMQQLDAELTDLNQLHRGHLRLGIP-PMVGHVYARLFRQYRQTYP 117
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDK--LISIPCYQWEYVIIVPLDHPL 178
V+L++++ ++I + I + D+A+ +LSP+ L ++ + +VP D PL
Sbjct: 118 NVELTVVEYGGRKIEQAILDGDIDVAVT--MLSPNQHPDLNTVALDHYPIFAVVP-DIPL 174
Query: 179 LL-LNSISLKEISNYP--LITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235
L +++ +IS P L T++ + S I + + TP + + D + V
Sbjct: 175 WRSLTTLTWAQISQEPFYLFTHEFTLSDHIHTCCQAA--GYTPQVAARSSQWDFLVALV- 231
Query: 236 LRMGIGI 242
+ G+G+
Sbjct: 232 -KSGVGV 237
>TIGR_CMR|VC_2103 [details] [associations]
symbol:VC_2103 "transcriptional regulator, LysR family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 PIR:F82117 RefSeq:NP_231735.1
ProteinModelPortal:Q9KQ97 DNASU:2613359 GeneID:2613359
KEGG:vch:VC2103 PATRIC:20083235 OMA:SAQAWIN ProtClustDB:CLSK2749731
Uniprot:Q9KQ97
Length = 292
Score = 145 (56.1 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 52/247 (21%), Positives = 115/247 (46%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M++ R+ E V Q + T+A++ L+ +QP +SK R G+R LT
Sbjct: 1 MDIRALRYFVELVNQQ-SFTKASERLFVTQPTISKMIRNLEQELEQPLLHREGRRF-WLT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ + + + I+ +++ L + + G+L + + ++ +++ +P
Sbjct: 59 EAGEIVYQRAQQILTQMQQLDAELTDLNQLHRGHLRLGIP-PMVGHVYARLFRQYRQTYP 117
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDK--LISIPCYQWEYVIIVPLDHPL 178
V+L++++ ++I + I + D+A+ +LSP+ L ++ + +VP D PL
Sbjct: 118 NVELTVVEYGGRKIEQAILDGDIDVAVT--MLSPNQHPDLNTVALDHYPIFAVVP-DIPL 174
Query: 179 LL-LNSISLKEISNYP--LITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235
L +++ +IS P L T++ + S I + + TP + + D + V
Sbjct: 175 WRSLTTLTWAQISQEPFYLFTHEFTLSDHIHTCCQAA--GYTPQVAARSSQWDFLVALV- 231
Query: 236 LRMGIGI 242
+ G+G+
Sbjct: 232 -KSGVGV 237
>TIGR_CMR|SO_3757 [details] [associations]
symbol:SO_3757 "rubisco operon transcriptional regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000233518 RefSeq:NP_719294.1
ProteinModelPortal:Q8CX39 GeneID:1171405 KEGG:son:SO_3757
PATRIC:23527194 OMA:LIAPKDH ProtClustDB:CLSK907319 Uniprot:Q8CX39
Length = 330
Score = 146 (56.5 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 52/238 (21%), Positives = 102/238 (42%)
Query: 18 NLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIEIIMQEI 77
N++ AA+AL+ +QP VS R+ T GQ + R+ +
Sbjct: 30 NISAAARALHLTQPTVSLQLKKLADILGEPLLNSTDGRMSP-TLVGQELYRAACDTLSRF 88
Query: 78 EGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEM 137
E + ++ G++ I T A+Y +P+I+ F QFP+VK++L GN I
Sbjct: 89 EDVNAFIQQARGGSVGHINIGLV-TTAKYVVPRILGAFYRQFPQVKVTLNIGNRAHILGR 147
Query: 138 IRNDQADIAIVTEILSPS-DKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLIT 196
+ D+ + + PS ++++S + +I P DH + I E+ I
Sbjct: 148 FERQEDDLYLFSH--PPSGEQVLSARIIKNPLQLIAPKDHWAVNRQQIRFSELKQERFIM 205
Query: 197 YDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFDSNRDK 254
+ + R+ + S Q + ++ +++ I+ V +G+ +I++ R+K
Sbjct: 206 REPGSATRLMFESWCSAQGIALSDTMQIESNEAIRLSVASGLGLSVISAHTLQEGREK 263
>TIGR_CMR|BA_3729 [details] [associations]
symbol:BA_3729 "als operon regulatory protein AlsR,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009058 "biosynthetic process"
evidence=ISS] InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039
PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 HOGENOM:HOG000233514 HSSP:Q9WXC7 RefSeq:NP_845992.1
RefSeq:YP_020366.2 RefSeq:YP_029712.1 ProteinModelPortal:Q81Y28
DNASU:1086914 EnsemblBacteria:EBBACT00000009267
EnsemblBacteria:EBBACT00000014962 EnsemblBacteria:EBBACT00000022266
GeneID:1086914 GeneID:2818310 GeneID:2849076 KEGG:ban:BA_3729
KEGG:bar:GBAA_3729 KEGG:bat:BAS3457 OMA:LSLCRDV
ProtClustDB:CLSK887996 BioCyc:BANT260799:GJAJ-3518-MONOMER
BioCyc:BANT261594:GJ7F-3630-MONOMER Uniprot:Q81Y28
Length = 301
Score = 145 (56.1 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 52/249 (20%), Positives = 107/249 (42%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L ++ V + + AA L +QP +S+ R +++ LT
Sbjct: 1 MELRHLQYF-VVVAEELHFGRAAARLQMTQPPLSQQIQQLEKEMGVMLFSRTKRKVE-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ L+ ++ ++IE +I + + G+L+I LP I++E+ +FP
Sbjct: 59 EAGEMFLKEVKKAFEQIEKAVEIAQSAQRGEVGSLSIGFVGAAIYDILPSIVREYRKKFP 118
Query: 121 KVKLSLLQ-GNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
+V ++L + P Q+ + +++ DI + + P+ L P + + +P HPL
Sbjct: 119 RVSVALHELSTPDQV-HALHDNRIDIGFLRPPI-PTQLLELEPIQKLSCTLCLPKAHPLA 176
Query: 180 LLNSISLKEISNYPLI-----TYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYV 234
+ I ++++ + P + + + + L RE +P IV E + V
Sbjct: 177 EKDEIHIEDLRDEPFVFITRPVWPALYDTILSLCREVGF---SPRIVQEATEYQTVMGLV 233
Query: 235 ELRMGIGII 243
+GI +I
Sbjct: 234 AAGIGITVI 242
>UNIPROTKB|Q4K3Q5 [details] [associations]
symbol:oxyR "Oxidative stress regulatory protein OxyR"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006979 "response to oxidative
stress" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0006979
GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:CP000076
GenomeReviews:CP000076_GR HOGENOM:HOG000233514 KO:K04761
OMA:SRTELRI ProtClustDB:CLSK869278 RefSeq:YP_263128.1
ProteinModelPortal:Q4K3Q5 STRING:Q4K3Q5 GeneID:3480440
KEGG:pfl:PFL_6070 PATRIC:19881673
BioCyc:PFLU220664:GIX8-6114-MONOMER Uniprot:Q4K3Q5
Length = 306
Score = 144 (55.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 53/256 (20%), Positives = 113/256 (44%)
Query: 1 MNLHQFRF-VREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGL 59
M L + R+ V A Q+F AA+ + SQP +S R +R L
Sbjct: 1 MTLTELRYIVTLAQEQHFG--HAAERCHVSQPTLSVGVKKLEDELGVLIFERSKSAVR-L 57
Query: 60 TKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
T G+ I+ + ++++ +G++++ + T L + +T Y P +I +
Sbjct: 58 TPVGETIVAQAQKVLEQAQGIRELAQAGKNQLTAPLKVGAIYTVGPYLFPHLIPQLHRVA 117
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
P++ L + + + + +RN + D I+ + +D ++++P Y + +++P HP
Sbjct: 118 PQMPLYIEENFTHVLRDKLRNGELDAIIIALPFNEAD-VLTLPLYDEPFYVLMPSGHPWT 176
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIK-LDREFSLQKLTP---YIVLETINSDIIKTYVE 235
+I +++ L+ R + L+ +L K + +E+ + + I+ V
Sbjct: 177 KKETIDANLLNDKSLLLLGEGHCFRDQVLEACPTLTKGNDGAKHTTVESSSLETIRHMVA 236
Query: 236 LRMGIGIIASIAFDSN 251
+GI I+ A DS+
Sbjct: 237 SGLGISILPLSAVDSH 252
>TIGR_CMR|BA_3170 [details] [associations]
symbol:BA_3170 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233514
RefSeq:NP_845483.1 RefSeq:YP_019810.2 RefSeq:YP_029205.1
ProteinModelPortal:Q81NL9 DNASU:1085948
EnsemblBacteria:EBBACT00000008432 EnsemblBacteria:EBBACT00000018360
EnsemblBacteria:EBBACT00000021047 GeneID:1085948 GeneID:2814402
GeneID:2851835 KEGG:ban:BA_3170 KEGG:bar:GBAA_3170 KEGG:bat:BAS2948
OMA:IKIYCES ProtClustDB:CLSK229643
BioCyc:BANT260799:GJAJ-3010-MONOMER
BioCyc:BANT261594:GJ7F-3112-MONOMER Uniprot:Q81NL9
Length = 292
Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 49/207 (23%), Positives = 88/207 (42%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M L + + N + T+AA+ L SQP +S+ R G+ I+ +T
Sbjct: 1 MELRHLEYFIQVCNNN-SFTKAAEVLGISQPTLSQQIRVLEGELDTPLFHRVGRGIK-MT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ + + IMQ+ + + E G +TI Y P I+K F +P
Sbjct: 59 EAGKLLFDKGKFIMQQFDDVYNEIFELKGVKRGVITIGGLLEDLTYLTPYIMK-FQQHYP 117
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+ + +++ + +++ + DI I P D L S Y E V+++P +HPL
Sbjct: 118 NIVVKIIESEVA-VNQIV-DKNIDIGITRSAQIP-DTLTSTLLYSEELVLVIPKNHPLNE 174
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKL 207
+ +S +E+ I S IK+
Sbjct: 175 TSFVSFRELVGLSRIMVSCSCRESIKI 201
>UNIPROTKB|P0ACQ4 [details] [associations]
symbol:oxyR species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=IDA] [GO:0001131 "bacterial-type RNA polymerase core
promoter proximal region sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0000986
"bacterial-type RNA polymerase core promoter proximal region
sequence-specific DNA binding" evidence=IDA] [GO:0051409 "response
to nitrosative stress" evidence=IDA] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 GO:GO:0006974
EMBL:U00006 GO:GO:0051409 HOGENOM:HOG000233514 EMBL:J04553
EMBL:X52666 EMBL:X16531 EMBL:M34102 PIR:D65203 RefSeq:NP_418396.1
RefSeq:YP_491491.1 PDB:1I69 PDB:1I6A PDBsum:1I69 PDBsum:1I6A
ProteinModelPortal:P0ACQ4 SMR:P0ACQ4 IntAct:P0ACQ4 PaxDb:P0ACQ4
PRIDE:P0ACQ4 EnsemblBacteria:EBESCT00000001351
EnsemblBacteria:EBESCT00000015405 GeneID:12934463 GeneID:948462
KEGG:ecj:Y75_p3227 KEGG:eco:b3961 PATRIC:32123443 EchoBASE:EB0675
EcoGene:EG10681 KO:K04761 OMA:LFDEPMK ProtClustDB:PRK11151
BioCyc:EcoCyc:PD00214 BioCyc:ECOL316407:JW3933-MONOMER
EvolutionaryTrace:P0ACQ4 Genevestigator:P0ACQ4 Uniprot:P0ACQ4
Length = 305
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 38/195 (19%), Positives = 86/195 (44%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MN+ ++ A+ ++ + AA + + SQP +S R +++ T
Sbjct: 1 MNIRDLEYL-VALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVL-FT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G ++ +++E++ LK++ + +G L I T Y LP II FP
Sbjct: 59 QAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
K+++ L + Q+ + + + D I+ ++ S+ I +P + ++ + DHP
Sbjct: 119 KLEMYLHEAQTHQLLAQLDSGKLDCVILA-LVKESEAFIEVPLFDEPMLLAIYEDHPWAN 177
Query: 181 LNSISLKEISNYPLI 195
+ + +++ L+
Sbjct: 178 RECVPMADLAGEKLL 192
>TIGR_CMR|BA_4195 [details] [associations]
symbol:BA_4195 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 RefSeq:NP_846431.1
RefSeq:YP_020839.1 RefSeq:YP_030142.1 ProteinModelPortal:Q81MQ1
DNASU:1088915 EnsemblBacteria:EBBACT00000012362
EnsemblBacteria:EBBACT00000018463 EnsemblBacteria:EBBACT00000022115
GeneID:1088915 GeneID:2818172 GeneID:2850768 KEGG:ban:BA_4195
KEGG:bar:GBAA_4195 KEGG:bat:BAS3892 HOGENOM:HOG000279078
OMA:LETHAFI ProtClustDB:CLSK887221
BioCyc:BANT260799:GJAJ-3949-MONOMER
BioCyc:BANT261594:GJ7F-4080-MONOMER Uniprot:Q81MQ1
Length = 294
Score = 130 (50.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 34/134 (25%), Positives = 60/134 (44%)
Query: 15 QNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIEIIM 74
Q N+ +AA+ L+ SQP +S+ R K + +T G+ + + ++
Sbjct: 23 QESNMRKAAERLFVSQPALSQRLQSIEKQWGMKFFIRSQKGLT-ITPEGEKVANYAKEML 81
Query: 75 QEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQI 134
Q E +K F G L IA +Y LP ++K+F ++P VK+SL G ++
Sbjct: 82 QREEDIKSELAVFRTETHGTLKIAVASVIGQYWLPPVLKKFVHKYPSVKISLFTGWSSEV 141
Query: 135 TEMIRNDQADIAIV 148
+ +AI+
Sbjct: 142 QKQFYEGDVHVAIL 155
>TIGR_CMR|CPS_4699 [details] [associations]
symbol:CPS_4699 "substrate-binding transcriptional
regulator, LysR family" species:167879 "Colwellia psychrerythraea
34H" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR000847
Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466
GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR HOGENOM:HOG000233518 RefSeq:YP_271343.1
ProteinModelPortal:Q47V29 STRING:Q47V29 GeneID:3522946
KEGG:cps:CPS_4699 PATRIC:21472217 OMA:LELCEWI
ProtClustDB:CLSK744745 BioCyc:CPSY167879:GI48-4705-MONOMER
Uniprot:Q47V29
Length = 296
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 61/286 (21%), Positives = 118/286 (41%)
Query: 11 EAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSI 70
EA + LT+AA L SQ S+A R G+ + +T+ G L +
Sbjct: 12 EATARLGKLTKAASELSLSQSAASQALKELEQSLGYPLFERTGRDLL-ITENGLKSLPKV 70
Query: 71 EIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN 130
I ++ LK + G L + + T A Y LP++I +F +P+V + GN
Sbjct: 71 RQISDLLDSLKLANLNTMS---GVLRVVASATIATYLLPQLIAKFVKIYPEVIPEIHIGN 127
Query: 131 PKQITEMIRNDQADIAIVTEILSPS-DKLISIPCYQWEYV-IIVPLDHPLLLLNSISLKE 188
+ + + + +A I ++ P+ + + I +Q + + I +H L +I+L++
Sbjct: 128 TQMVIDYLDKGKASIGLIE---GPAVHRHLQITPWQVDKLQIFCAPEHSLAEKATINLEQ 184
Query: 189 ISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAF 248
+ Y + + R D + +E IK V+ +G+G ++ ++
Sbjct: 185 LQQYSWVLREHGSGTRAIFDAAIEQMGAQISLGIELTRQSAIKESVKAGLGLGCLSQLSI 244
Query: 249 DSNRDKNLRSISASHLFGTTISR---VIIKQGTYLRSYVYSFIKLL 291
+ N + A H +SR ++ + +Y S +FI L
Sbjct: 245 AE--ELNNGGLIALHS-PLNLSRRFALVTNKNSYHNSLAQTFIDYL 287
>UNIPROTKB|Q6SJC1 [details] [associations]
symbol:pcaQ "Putative LysR type transcriptional regulator"
species:89184 "Ruegeria pomeroyi" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR000847 InterPro:IPR012787 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0045893
GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 GenomeReviews:CP000032_GR
GO:GO:0019619 EMBL:AY457918 ProteinModelPortal:Q6SJC1
PATRIC:23381396 ProtClustDB:CLSK767498 TIGRFAMs:TIGR02424
Uniprot:Q6SJC1
Length = 305
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 49/201 (24%), Positives = 87/201 (43%)
Query: 5 QFRFVR---EAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTK 61
+FR ++ E R+ T AAK L+ +QP +SK R + LTK
Sbjct: 7 KFRHIQCFVEIAREGSLKTAAAK-LFLTQPAMSKTLKELEEITGTTLMRRSRAGVE-LTK 64
Query: 62 PGQAILR----SIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTI 117
PG+ L S+ + Q ++G++ G+ L++ + A Y +P + EF+
Sbjct: 65 PGEVFLHFARMSLASLQQGLDGIETEGRR----QRETLSVGALPSVAAYLMPGAVSEFSR 120
Query: 118 QFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIP---CYQWEYVIIVPL 174
P L + G + E +R D+ I + P + + + YQ + V +V
Sbjct: 121 LAPHALLRIQDGPHGYLIERLRLGALDLVIGR--MGPPETMQGLSFTQLYQEQVVFVVRP 178
Query: 175 DHPLLLLNSISLKEISNYPLI 195
HPLL + L ++++P+I
Sbjct: 179 GHPLLA--APDLARVADWPVI 197
>TIGR_CMR|SPO_A0047 [details] [associations]
symbol:SPO_A0047 "pca operon transcriptional activator
PcaQ" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 InterPro:IPR012787
Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351
GenomeReviews:CP000032_GR GO:GO:0019619 EMBL:AY457918
ProteinModelPortal:Q6SJC1 PATRIC:23381396 ProtClustDB:CLSK767498
TIGRFAMs:TIGR02424 Uniprot:Q6SJC1
Length = 305
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 49/201 (24%), Positives = 87/201 (43%)
Query: 5 QFRFVR---EAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTK 61
+FR ++ E R+ T AAK L+ +QP +SK R + LTK
Sbjct: 7 KFRHIQCFVEIAREGSLKTAAAK-LFLTQPAMSKTLKELEEITGTTLMRRSRAGVE-LTK 64
Query: 62 PGQAILR----SIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTI 117
PG+ L S+ + Q ++G++ G+ L++ + A Y +P + EF+
Sbjct: 65 PGEVFLHFARMSLASLQQGLDGIETEGRR----QRETLSVGALPSVAAYLMPGAVSEFSR 120
Query: 118 QFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIP---CYQWEYVIIVPL 174
P L + G + E +R D+ I + P + + + YQ + V +V
Sbjct: 121 LAPHALLRIQDGPHGYLIERLRLGALDLVIGR--MGPPETMQGLSFTQLYQEQVVFVVRP 178
Query: 175 DHPLLLLNSISLKEISNYPLI 195
HPLL + L ++++P+I
Sbjct: 179 GHPLLA--APDLARVADWPVI 197
>TIGR_CMR|BA_3557 [details] [associations]
symbol:BA_3557 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233521
RefSeq:NP_845830.1 RefSeq:YP_020190.1 RefSeq:YP_029554.1
ProteinModelPortal:Q81YI9 DNASU:1084435
EnsemblBacteria:EBBACT00000010267 EnsemblBacteria:EBBACT00000014749
EnsemblBacteria:EBBACT00000020087 GeneID:1084435 GeneID:2818519
GeneID:2848743 KEGG:ban:BA_3557 KEGG:bar:GBAA_3557 KEGG:bat:BAS3297
OMA:YDELNGC ProtClustDB:CLSK917078
BioCyc:BANT260799:GJAJ-3359-MONOMER
BioCyc:BANT261594:GJ7F-3469-MONOMER Uniprot:Q81YI9
Length = 283
Score = 126 (49.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 59/247 (23%), Positives = 110/247 (44%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M++ E ++N N++ AAK L Q GV+ R+GK + LT
Sbjct: 1 MDIKDLTVFYEVAKEN-NISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVT-LT 58
Query: 61 KPGQAIL----RSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFT 116
G+ +L + I ++ Q I+ ++ G E G L I T + LP I+ +
Sbjct: 59 SNGEILLTYAKQIIHLMDQSIKAVQSNGTE----PKGTLKIGCTESTTAVRLPSILTTYY 114
Query: 117 IQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDH 176
++P+V+L L +Q+ +++ + + D A + + ++L S ++ E V+I
Sbjct: 115 EKYPEVELILETNTTEQLIKLVLDRKLDGAFIAGS-TQHNELHSNVFHEEELVLISKKT- 172
Query: 177 PLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236
L+S LK+I + L+ + R L+ + ++P VLE + I V+
Sbjct: 173 ----LSS--LKDIEDMNLLAFSHGCYYRSLLEDWLQEEDISPKRVLEFGTIEAILACVKS 226
Query: 237 RMGIGII 243
MG+ I+
Sbjct: 227 SMGVAIM 233
>UNIPROTKB|O33175 [details] [associations]
symbol:oxyS "OxyS protein" species:1773 "Mycobacterium
tuberculosis" [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0080134 "regulation of response to
stress" evidence=IDA] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0019217 GO:GO:0006351 GO:GO:0080134 HOGENOM:HOG000233514
EMBL:AL123456 EMBL:AJ000188 PIR:H70840 RefSeq:NP_214631.1
RefSeq:YP_006513436.1 HSSP:Q9WXC7 SMR:O33175
EnsemblBacteria:EBMYCT00000000424 GeneID:13316100 GeneID:886914
KEGG:mtu:Rv0117 KEGG:mtv:RVBD_0117 PATRIC:18148759
TubercuList:Rv0117 OMA:SIDHNFH ProtClustDB:CLSK790277
Uniprot:O33175
Length = 314
Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 48/214 (22%), Positives = 85/214 (39%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIE 71
AV Q + AA+ Y SQP +S A R G GLT+ G+ ++ +
Sbjct: 11 AVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINR-GHSFEGLTREGERLVVWAK 69
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG-N 130
I+ E K + TG L + T T + A ++ F P K+ +
Sbjct: 70 RILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTA-SLVLSAFCSAHPLAKVQVCSRLA 128
Query: 131 PKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS 190
++ +R + D IV SD + +P Y+ +YV++ P D +++ ++ +
Sbjct: 129 ATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTSTLVWRDAA 188
Query: 191 NYPLITYDLSFSGRIKLDREFSLQKLTPYIVLET 224
PL R +D F+ ++ +ET
Sbjct: 189 QLPLALLTADMRDRQVIDAAFADHAVSAIPQVET 222
>UNIPROTKB|Q9KVI5 [details] [associations]
symbol:VC_0161 "Transcriptional activator IlvY"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 KO:K02521 ProtClustDB:PRK11716 OMA:FELGVCC PIR:F82356
RefSeq:NP_229818.1 ProteinModelPortal:Q9KVI5 DNASU:2614428
GeneID:2614428 KEGG:vch:VC0161 PATRIC:20079368 Uniprot:Q9KVI5
Length = 298
Score = 125 (49.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 54/243 (22%), Positives = 104/243 (42%)
Query: 18 NLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIEIIMQEI 77
N ++ A A++ S +S+ R + + LT +L I+ +
Sbjct: 17 NFSKTASAMHLSPSALSRQIQKLEQDLGHTLFLRDNRSVE-LTPAAHQLLPVAARIIHDW 75
Query: 78 EGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEM 137
+ S G + + + T + LP+++ F ++ P ++ LL G+P Q +
Sbjct: 76 RQFTTELNDDSQELRGEIKLFCSVTASYSHLPELLSSFRLKHPYIEFKLLTGDPAQAIDK 135
Query: 138 IRNDQADIAI--VTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLI 195
I +D+ADIAI + E L + +I + +I PL + + + KE ++ I
Sbjct: 136 ILHDEADIAISAMPEQLPSRIEFATIS--EIPLSVIAPLGISSFM-DELQ-KEQPDWNEI 191
Query: 196 TYDLSFSG--RIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFDSN-- 251
+ + SG R + + F K+ P I + + I + V L G+GI + +++
Sbjct: 192 PFIVPESGTARDRANTWFKQMKIKPNIYAQIAGHEAIVSLVALGCGVGIAPDVVINNSPV 251
Query: 252 RDK 254
RDK
Sbjct: 252 RDK 254
>TIGR_CMR|VC_0161 [details] [associations]
symbol:VC_0161 "transcriptional activator IlvY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039
PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 KO:K02521
ProtClustDB:PRK11716 OMA:FELGVCC PIR:F82356 RefSeq:NP_229818.1
ProteinModelPortal:Q9KVI5 DNASU:2614428 GeneID:2614428
KEGG:vch:VC0161 PATRIC:20079368 Uniprot:Q9KVI5
Length = 298
Score = 125 (49.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 54/243 (22%), Positives = 104/243 (42%)
Query: 18 NLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIEIIMQEI 77
N ++ A A++ S +S+ R + + LT +L I+ +
Sbjct: 17 NFSKTASAMHLSPSALSRQIQKLEQDLGHTLFLRDNRSVE-LTPAAHQLLPVAARIIHDW 75
Query: 78 EGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEM 137
+ S G + + + T + LP+++ F ++ P ++ LL G+P Q +
Sbjct: 76 RQFTTELNDDSQELRGEIKLFCSVTASYSHLPELLSSFRLKHPYIEFKLLTGDPAQAIDK 135
Query: 138 IRNDQADIAI--VTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLI 195
I +D+ADIAI + E L + +I + +I PL + + + KE ++ I
Sbjct: 136 ILHDEADIAISAMPEQLPSRIEFATIS--EIPLSVIAPLGISSFM-DELQ-KEQPDWNEI 191
Query: 196 TYDLSFSG--RIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFDSN-- 251
+ + SG R + + F K+ P I + + I + V L G+GI + +++
Sbjct: 192 PFIVPESGTARDRANTWFKQMKIKPNIYAQIAGHEAIVSLVALGCGVGIAPDVVINNSPV 251
Query: 252 RDK 254
RDK
Sbjct: 252 RDK 254
>TIGR_CMR|SO_0817 [details] [associations]
symbol:SO_0817 "transcriptional activator protein MetR"
species:211586 "Shewanella oneidensis MR-1" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009086 "methionine biosynthetic
process" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000218906 KO:K03576
RefSeq:NP_716448.1 ProteinModelPortal:Q8EIM1 GeneID:1168668
KEGG:son:SO_0817 PATRIC:23521301 OMA:QSIAYQH ProtClustDB:CLSK905949
Uniprot:Q8EIM1
Length = 301
Score = 125 (49.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 43/201 (21%), Positives = 89/201 (44%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIE 71
A++++ +L AAK + +Q +S R K + T+ G +L E
Sbjct: 12 ALKESGSLAGAAKKRFVTQSALSHQIKELEQRINSPIFVRKSKPL-SFTQEGARLLHLAE 70
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATT-HTQARYALPKIIKEFTIQFPKVKLSLLQGN 130
I+ ++ + K DT L + H+ R+ +P ++++F P+ +L L +
Sbjct: 71 EILPKVLETETDLKNGLETDTNQLRVGIECHSCFRWLMP-VMEQFRQDHPQAELDLSSRH 129
Query: 131 PKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS 190
+ + DI + ++ + P L + +E ++V DHPL ++ K++S
Sbjct: 130 LFDSLNALEMGELDIVLTSDPV-PGHSLAYQHLFDFEVKLVVAKDHPLAKEAYVTPKQLS 188
Query: 191 NYPLITYDLSFSGRIKLDREF 211
P+I+Y + + R+ + R F
Sbjct: 189 RLPIISYPVPLA-RLDIYRHF 208
>TIGR_CMR|BA_2435 [details] [associations]
symbol:BA_2435 "transcriptional regulator, LysR family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233521
RefSeq:NP_844811.1 RefSeq:YP_019076.1 RefSeq:YP_028528.1
ProteinModelPortal:Q81QJ0 DNASU:1086491
EnsemblBacteria:EBBACT00000012916 EnsemblBacteria:EBBACT00000017042
EnsemblBacteria:EBBACT00000019947 GeneID:1086491 GeneID:2815296
GeneID:2851207 KEGG:ban:BA_2435 KEGG:bar:GBAA_2435 KEGG:bat:BAS2267
OMA:LRQSENI ProtClustDB:CLSK916626
BioCyc:BANT260799:GJAJ-2333-MONOMER
BioCyc:BANT261594:GJ7F-2415-MONOMER Uniprot:Q81QJ0
Length = 290
Score = 124 (48.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 62/275 (22%), Positives = 110/275 (40%)
Query: 18 NLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIEIIMQEI 77
+ ++AA AL +Q V+ R GK++ LTK G ++
Sbjct: 17 SFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVL-LTKAGHQFHPYALELLAIY 75
Query: 78 EGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNPKQITEM 137
E ++I + + G L+I + + A Y LP++++ + + PKV + L +Q +
Sbjct: 76 EKAQEIPQNTDQLE-GTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQK 134
Query: 138 IRNDQADIA-IVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISNYPLIT 196
+ + D+ I+ E + +D I+ + I+P H N L + + + + T
Sbjct: 135 LHEGETDVVFIIGESIEHND-FITCTFSNETFGWILP-PHYSTQSNPFCLLKETQF-IFT 191
Query: 197 YDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFDSNRDKNL 256
+ S R +DR P ET N ++IK V +GI I+ I N K
Sbjct: 192 -EQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYIVVQENCQKEQ 250
Query: 257 RSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLL 291
S VI + ++ V SF+ L
Sbjct: 251 IRFHPIETPSVIQSHVIYHKSRWISPVVQSFLSQL 285
>UNIPROTKB|P33634 [details] [associations]
symbol:yfiE "predicted DNA-binding transcriptional
regulator LYSR-type" species:83333 "Escherichia coli K-12"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] InterPro:IPR000847 Pfam:PF00126 PROSITE:PS50931
Pfam:PF03466 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 EMBL:D64044 HOGENOM:HOG000233521 EMBL:D13169
PIR:H65035 RefSeq:NP_417072.4 RefSeq:YP_490805.1
ProteinModelPortal:P33634 SMR:P33634 IntAct:P33634
EnsemblBacteria:EBESCT00000002013 EnsemblBacteria:EBESCT00000015507
GeneID:12932642 GeneID:947064 KEGG:ecj:Y75_p2530 KEGG:eco:b2577
PATRIC:32120555 EchoBASE:EB1733 EcoGene:EG11785 OMA:ELPFSET
ProtClustDB:CLSK880438 BioCyc:EcoCyc:EG11785-MONOMER
BioCyc:ECOL316407:JW2561-MONOMER Genevestigator:P33634
Uniprot:P33634
Length = 293
Score = 124 (48.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 37/147 (25%), Positives = 74/147 (50%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
M+L +F ++ V + + A++ L +Q V+ + G+R+ LT
Sbjct: 1 MDLRRFITLKTVVEEG-SFLRASQKLCCTQSTVTFHIQQLEQEFSVQLFEKIGRRMC-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ +L I + + ++ L++ K+ S D G L + + T Y +P++++ F + P
Sbjct: 59 REGKKLLPHIYELTRVMDTLREAAKKESDPD-GELRVVSGETLLSYRMPQVLQRFRQRAP 117
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAI 147
KV+LSL N I + + ND+AD+ +
Sbjct: 118 KVRLSLQSLNCYVIRDALLNDEADVGV 144
>TIGR_CMR|SPO_A0387 [details] [associations]
symbol:SPO_A0387 "transcriptional regulator, LysR family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:CP000032
GenomeReviews:CP000032_GR RefSeq:YP_165214.1
ProteinModelPortal:Q5LKJ4 GeneID:3196794 KEGG:sil:SPOA0387
PATRIC:23382130 HOGENOM:HOG000121929 OMA:GHISIAT
ProtClustDB:CLSK759374 Uniprot:Q5LKJ4
Length = 304
Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 47/191 (24%), Positives = 84/191 (43%)
Query: 9 VREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILR 68
V AV + ++++AA L+ +QP +S A H + +P +L
Sbjct: 10 VFHAVMEEGSVSKAADRLHLTQPAISIALSRLEDMLGFPLF--HRSKGHFAPRPEAYLLH 67
Query: 69 -SIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLL 127
E+ + +E + G L I A LP+++ FT PKV++ L
Sbjct: 68 LDAELSILAVEQFANRARLIKQGGAGLLRIGALGASAFGLLPQLVARFTADNPKVEIDLR 127
Query: 128 QGNPKQITEMIRNDQADIAIV-TEILSPSDKL--ISIPCYQWEYVIIVPLDHPLLLLNSI 184
+ QI+ ++ N Q DI +V + +PS ++ S+PC V I P PL + I
Sbjct: 128 VRSSHQISYLVSNGQCDIGLVEAPVAAPSLEVEPFSLPC-----VCIFPAGSPLEAKDRI 182
Query: 185 SLKEISNYPLI 195
+ +++ ++ LI
Sbjct: 183 TPRDLVDHRLI 193
>TIGR_CMR|SPO_0241 [details] [associations]
symbol:SPO_0241 "transcriptional regulator, LysR family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PROSITE:PS50931 Pfam:PF03466 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 RefSeq:YP_165510.1 ProteinModelPortal:Q5LX30
DNASU:3194549 GeneID:3194549 KEGG:sil:SPO0241 PATRIC:23373733
HOGENOM:HOG000123751 OMA:RAVMLCQ ProtClustDB:CLSK751488
Uniprot:Q5LX30
Length = 309
Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 61/257 (23%), Positives = 102/257 (39%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKP 62
L Q R AV Q ++T AA+ L SQP S+ R G + T
Sbjct: 5 LRQLEAFR-AVAQTGSITRAAQQLGISQPAASRLLADFSASVEFPLFVREGGSMSP-TPE 62
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
+ +L I + + + L+++ G+L IA A LP+++ F P V
Sbjct: 63 SRYMLAEINRVFEGLAHLEELRHNLKDRTAGHLRIACLPGFATSHLPRVLTAFLKDRPGV 122
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIVTEILS-PSDKLISIPCYQWEYVIIVPLDHPLLLL 181
++L P++I E I Q D AI P+ + I V I+P HPL
Sbjct: 123 TVTLEPDRPERILEWIVGQQYDCAITDGFAGHPATESTDIAI---RTVCILPPGHPLSDR 179
Query: 182 NSISLKEISNYPLI--TYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
I+ ++ +I D F R+ S +L+ +I + + T V G
Sbjct: 180 PEITPHDLRGEKIIHSRRDSPFFRRLAQAFTDSEVELSSWIEVRQFTTAC--TIVAEGQG 237
Query: 240 IGIIASIAFDSNRDKNL 256
+++++ + RD+ L
Sbjct: 238 AAVLSALDAEQYRDRGL 254
>TIGR_CMR|CPS_4718 [details] [associations]
symbol:CPS_4718 "hydrogen peroxide-inducible genes
activator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0042542 "response to hydrogen
peroxide" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR HOGENOM:HOG000233514 KO:K04761
RefSeq:YP_271362.1 ProteinModelPortal:Q47V10 STRING:Q47V10
GeneID:3518825 KEGG:cps:CPS_4718 PATRIC:21472253 OMA:ARENSHF
BioCyc:CPSY167879:GI48-4724-MONOMER Uniprot:Q47V10
Length = 299
Score = 123 (48.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 37/185 (20%), Positives = 77/185 (41%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIE 71
A+ ++ + +AA++ + SQP +S RH + + LT G+ +++
Sbjct: 12 AIDKHKHFGKAAQSCFVSQPTLSGQLMKLEEQLGLQLVERHRRNVM-LTPAGEQLVKEAR 70
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP 131
++Q + K G+L + T A Y LP I+ + P + L +
Sbjct: 71 KVLQAAGQFESCAKALLDPFAGDLHLGLIPTLAPYLLPHIMADLNKALPNINFFLHENQT 130
Query: 132 KQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISN 191
K + + + + D+ I+ L DK S + ++ P +H L +SL ++ +
Sbjct: 131 KVLLQELDEGKLDVLILP-YLDEMDKFESYQLFDEPLMLATPKNHRLANKKDLSLSDLHD 189
Query: 192 YPLIT 196
++T
Sbjct: 190 EKILT 194
>TIGR_CMR|SO_1259 [details] [associations]
symbol:SO_1259 "transcriptional regulator, LysR family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR RefSeq:NP_716882.1
ProteinModelPortal:Q8EHG2 GeneID:1169080 KEGG:son:SO_1259
PATRIC:23522168 HOGENOM:HOG000281105 OMA:MELQVCQ
ProtClustDB:CLSK906170 Uniprot:Q8EHG2
Length = 301
Score = 123 (48.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 69/304 (22%), Positives = 123/304 (40%)
Query: 1 MNLHQFR-FVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGL 59
+ LH + FV A ++F +AA AL+ +QP VS R+ R L
Sbjct: 2 LELHWLKTFVTLAECKHFG--KAAAALHMTQPNVSLHIKQLEQNTRVKLIERNPFR---L 56
Query: 60 TKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
T+ G +L S + + E++ + + G LTIA + +R L + + F +F
Sbjct: 57 TQAGFRLLESSQKTLMELQVCQADLNAINDLSQGTLTIAASDIISRLLLIQPFQLFKAEF 116
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIA-IVTEILSPSDKLISIPCYQWEYVIIVPLDHPL 178
P + SLL Q +E++ N +AD+ ++ + S + +W L + L
Sbjct: 117 PGIDFSLLNTTSFQASELVTNAEADLGFVIAQKESQPLHFTELQQIKW-----CALGNNL 171
Query: 179 LLLNSISLKE---ISNYP-LITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYV 234
L ++ ++ P LI R LD L Y ++E + D +
Sbjct: 172 ALWQQSQGRDDMPLAEQPTLILLGHDTRTRELLDPALPSLNLPRYRIMEVGSVDAQIDWA 231
Query: 235 ELRMGIGIIASIAFDSNRDKNLRS-ISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSP 293
E G+ I+ F NL+S I+ F +T I++Q L + + ++
Sbjct: 232 EAGFGVAIVPE--FSIYTKTNLKSKITPLPQFPSTSLGYIVRQNQILSKAIKQLLHWVNQ 289
Query: 294 KLNR 297
++ R
Sbjct: 290 EIIR 293
>TIGR_CMR|SPO_A0177 [details] [associations]
symbol:SPO_A0177 "hydrogen peroxide-inducible genes
activator, putative" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039
PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 EMBL:CP000032 GenomeReviews:CP000032_GR
RefSeq:YP_165008.1 ProteinModelPortal:Q5LL50 GeneID:3196842
KEGG:sil:SPOA0177 PATRIC:23381688 OMA:CLRDQTM Uniprot:Q5LL50
Length = 230
Score = 120 (47.3 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 39/178 (21%), Positives = 73/178 (41%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
++L ++ +++ Q + AA SQP +S+ R GK + LT
Sbjct: 4 LSLRDLEYI-QSIAQEGHFGAAAVGCGVSQPAISQQVLKLEARLGFAIFERQGKHV-SLT 61
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G LR E+++ L + S G L + T Y LP ++ ++P
Sbjct: 62 PSGAQFLRKAEVVLAGARELLDMSVGLSDNLEGELRVGVISTLGPYLLPLVLGSIKSRYP 121
Query: 121 KVKLSLLQGNPKQITEMIRNDQAD-IAIVTEILSPSDKLISIPCYQWE-YVIIVPLDH 176
+++L L + + +M+ + + D I I TE P + + +E + + P DH
Sbjct: 122 QIRLRLSEEPTTVLEQMLADRELDAILIATE---PKHQHLETAGLFFEPFALACPADH 176
>TIGR_CMR|CPS_3863 [details] [associations]
symbol:CPS_3863 "transcriptional regulator, LysR family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677 eggNOG:COG0583
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR HOGENOM:HOG000233514 RefSeq:YP_270525.1
ProteinModelPortal:Q47XE5 STRING:Q47XE5 DNASU:3518720
GeneID:3518720 KEGG:cps:CPS_3863 PATRIC:21470629 OMA:DDNSEAV
ProtClustDB:CLSK817088 BioCyc:CPSY167879:GI48-3880-MONOMER
Uniprot:Q47XE5
Length = 307
Score = 121 (47.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 61/262 (23%), Positives = 108/262 (41%)
Query: 5 QFR-FVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRG--LTK 61
Q R FV A + F+ T A KA T QP +S + + + LT
Sbjct: 10 QLRHFVWVAELKGFH-TAAEKACRT-QPAISLSIRDLENKLSTILFEKRNAKTSNTELTP 67
Query: 62 PGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPK 121
GQ L + ++ + + + S + TG+L +A+ + A LP+++ +F P+
Sbjct: 68 FGQYFLPKAKELIAHHDNVAQDMALMSEHKTGHLRLASVPSIACRMLPELLSKFIADVPE 127
Query: 122 VKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISI-PCYQWEYVIIVPLDHPLLL 180
+ +S N + + + Q DI I + I+ P ++ + ++ DHP
Sbjct: 128 LHISFYDDNSEAVLRKVEKQQVDIGIASLPHGHEHADITFTPIWEDQLGVVCREDHPFAE 187
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFS-LQKLTPYIVLETINSDIIKTYVELRMG 239
+ + KE+ LI S R+ D E L + +++ S+++ L G
Sbjct: 188 MTELHWKELRKQRLIRNGTS---RLLEDTEAEPLLSDSQFLI-----SNMLSLIAMLEEG 239
Query: 240 IGI--IASIAFDSNRDKNLRSI 259
+GI + AF N K LR I
Sbjct: 240 LGITTLPWFAFPKNNSK-LRFI 260
>TIGR_CMR|CPS_3421 [details] [associations]
symbol:CPS_3421 "transcriptional regulator, LysR family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677 eggNOG:COG0583
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR RefSeq:YP_270096.1
ProteinModelPortal:Q47YM4 STRING:Q47YM4 DNASU:3522108
GeneID:3522108 KEGG:cps:CPS_3421 PATRIC:21469791
HOGENOM:HOG000233522 OMA:QDITISR
BioCyc:CPSY167879:GI48-3450-MONOMER Uniprot:Q47YM4
Length = 305
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 74/311 (23%), Positives = 129/311 (41%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MN + E R L+ AAK L VS+ R LT
Sbjct: 1 MNWDDIKIFLEVARAE-RLSTAAKRLTMDASTVSRRLHKLEESIATKLFDRTQDG-HVLT 58
Query: 61 KPGQAILRSIEIIMQEIE-GLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
G+ +L S + Q+ + L I + + G + I T + + + Q
Sbjct: 59 PDGEMLLTSACKMEQDAQHALSSIHNN-NEENCGLVRIGVTEALGNFFVSPNLLTLQQQH 117
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPC-YQWE-YVIIVPLDHP 177
P + + LL + + ++ RN+ ADIAI E + ++S C Y+ + YV LDH
Sbjct: 118 PSIDVHLLLFS--RYVKISRNE-ADIAIAVERPKSTSMIVSKLCDYKLQLYVHQDYLDHN 174
Query: 178 LLLL-NSISLKEISNYPLITY--DLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYV 234
L I+L ++ + +TY +L F+ ++ +E + L+ + ++ II Y
Sbjct: 175 LKQYPQGITLDNLAEHKWVTYVDNLIFTDQLSYIKELD-RYLSGELKANFSSTSIISQYF 233
Query: 235 ELRMGIGIIASIAFDSNRDKNL-----RSISASHLFGTTI---SRVIIKQGT---YLRSY 283
++ G+GI F +++DK+L + I+ S F S+ + T YL+
Sbjct: 234 AIKSGLGIGILPCFLADQDKSLIKLHSQDITISRSFWLVTHPESKRLSHVNTVWQYLKQL 293
Query: 284 VYSFIKLLSPK 294
V +LL+PK
Sbjct: 294 VLEHAELLNPK 304
>UNIPROTKB|P0A9F9 [details] [associations]
symbol:metR "MetR" species:83333 "Escherichia coli K-12"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0016597 "amino acid binding"
evidence=IDA] [GO:0008652 "cellular amino acid biosynthetic
process" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0009086 "methionine biosynthetic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931
Pfam:PF03466 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 GO:GO:0009086 EMBL:M87049
EMBL:J04155 EMBL:M37630 PIR:A36066 RefSeq:NP_418272.1
RefSeq:YP_491614.1 ProteinModelPortal:P0A9F9 SMR:P0A9F9
IntAct:P0A9F9 MINT:MINT-1262668 PRIDE:P0A9F9
EnsemblBacteria:EBESCT00000000236 EnsemblBacteria:EBESCT00000000237
EnsemblBacteria:EBESCT00000016276 GeneID:12930482 GeneID:948310
KEGG:ecj:Y75_p3350 KEGG:eco:b3828 PATRIC:32123157 EchoBASE:EB0586
EcoGene:EG10591 HOGENOM:HOG000218906 KO:K03576 OMA:PHQTTLR
ProtClustDB:PRK15421 BioCyc:EcoCyc:PD03938
BioCyc:ECOL316407:JW3804-MONOMER Genevestigator:P0A9F9
Uniprot:P0A9F9
Length = 317
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 52/235 (22%), Positives = 105/235 (44%)
Query: 11 EAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSI 70
+A+R +L AA L+ +Q +S R + +R T G+ +L+
Sbjct: 11 QALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLR-FTPQGEILLQLA 69
Query: 71 EIIMQEIEGLKKIGKEFSAYDTGNLTIATT-HTQARYALPKIIKEFTIQFPKVKLSLLQG 129
++ +I + E T L IA H+ ++ P + + F +P+V++ G
Sbjct: 70 NQVLPQISQALQACNE--PQQT-RLRIAIECHSCIQWLTPAL-ENFHKNWPQVEMDFKSG 125
Query: 130 NPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEI 189
++ + D+ + ++IL P L P + +E +++ DHPL I+ +++
Sbjct: 126 VTFDPQPALQQGELDLVMTSDIL-PRSGLHYSPMFDYEVRLVLAPDHPLAAKTRITPEDL 184
Query: 190 SNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETI-NSDIIKTYVELRMGIGII 243
++ L+ Y + S R+ + R F LQ L+++ N+ ++ V RMGI +
Sbjct: 185 ASETLLIYPVQRS-RLDVWRHF-LQPAGVSPSLKSVDNTLLLIQMVAARMGIAAL 237
>TIGR_CMR|SPO_0832 [details] [associations]
symbol:SPO_0832 "transcriptional regulator, LysR family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 HOGENOM:HOG000233514 RefSeq:YP_166085.1
ProteinModelPortal:Q5LV70 GeneID:3195123 KEGG:sil:SPO0832
PATRIC:23374941 OMA:LETNCAL ProtClustDB:CLSK751520 Uniprot:Q5LV70
Length = 285
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 51/229 (22%), Positives = 89/229 (38%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIE 71
A+ ++ + +AA+ SQP S R R +GLT G+ I+R
Sbjct: 4 ALARHRHFAKAAEECGISQPAFSMRIRNLEERLGVTIV-RRANRFQGLTDEGEMIVRRAR 62
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP 131
I+ + + L++ +G L + T + ++++ P++ + +
Sbjct: 63 RILGDAKALEQEVAAIRGEISGALILGVIPTALAFT-GRLVRRLHQAHPRIVARIDSMSA 121
Query: 132 KQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEISN 191
I + + D I +D P Y+ YV++VP H I +++
Sbjct: 122 TAIQQGLDEGTIDAGITYGDSIGTDLRHVQPLYEETYVLLVPA-HLTEATGPIPWARVAD 180
Query: 192 YPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+PL + R LDR F+ Q L P IV ET S V R G+
Sbjct: 181 FPLCLLEPQMQNRRILDRIFAEQGLHPRIVAET--SGFTAAMVMAREGL 227
>UNIPROTKB|Q47005 [details] [associations]
symbol:nac "Nac DNA-binding transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0042128 "nitrate
assimilation" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IGI;ISS;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IGI;ISS;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;IGI;ISS;IDA] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0045892
GO:GO:0045893 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 GO:GO:0042128 EMBL:L31639 HOGENOM:HOG000233514
EMBL:U56736 PIR:D64963 RefSeq:NP_416493.1 RefSeq:YP_490232.1
ProteinModelPortal:Q47005 SMR:Q47005 IntAct:Q47005 DNASU:946501
EnsemblBacteria:EBESCT00000000273 EnsemblBacteria:EBESCT00000015611
GeneID:12931413 GeneID:946501 KEGG:ecj:Y75_p1950 KEGG:eco:b1988
PATRIC:32119307 EchoBASE:EB4013 EcoGene:EG14265 OMA:HENSGSV
ProtClustDB:PRK11233 BioCyc:EcoCyc:G7072-MONOMER
BioCyc:ECOL316407:JW1967-MONOMER Genevestigator:Q47005
Uniprot:Q47005
Length = 305
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 50/249 (20%), Positives = 109/249 (43%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
MN + ++ + V +LT+AA+ L+ +QP +S+ R + + T
Sbjct: 1 MNFRRLKYFVKIVDIG-SLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTP-T 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIA-TTHTQARYALPKIIKEFTIQF 119
G+ + I+++ E + +G ++I T A +++ +F
Sbjct: 59 DAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEF 118
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
P++ + L + + + E + N Q D+A++ E SP + S + + ++ D P
Sbjct: 119 PEIVIYLHENSGAVLNEKLINHQLDMAVIYEH-SPVAGVSSQALLKEDLFLVGTQDCPG- 176
Query: 180 LLNSISLKEISNYPL-ITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRM 238
S+ + I+ L + D S + R+++D FSL++LT ++ E + + + M
Sbjct: 177 --QSVDVNAIAQMNLFLPSDYS-AIRLRVDEAFSLRRLTAKVIGEIESIATLTAAIASGM 233
Query: 239 GIGIIASIA 247
G+ ++ A
Sbjct: 234 GVAVLPESA 242
>UNIPROTKB|Q9KRD6 [details] [associations]
symbol:VC_1706 "Transcriptional activator MetR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 KO:K03576 OMA:PHQTTLR PIR:G82167 RefSeq:NP_231342.1
ProteinModelPortal:Q9KRD6 DNASU:2613711 GeneID:2613711
KEGG:vch:VC1706 PATRIC:20082472 ProtClustDB:CLSK874510
Uniprot:Q9KRD6
Length = 305
Score = 114 (45.2 bits), Expect = 0.00038, P = 0.00038
Identities = 40/201 (19%), Positives = 89/201 (44%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIE 71
++R +LT A +L+ +Q +S R + +R T G+ +LR +
Sbjct: 12 SLRDTGSLTATATSLHLTQSALSHQIKDLEARIGGQLFLRKTRPVR-FTAEGEILLRLAD 70
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATT-HTQARYALPKIIKEFTIQFPKVKLSLLQGN 130
I+ ++ + G L +A H+ ++ +P + +E+ + +P V L G
Sbjct: 71 DILPKMSRAENELASLKEDVNGRLHMAIECHSCFQWLMPAL-REYQVSWPNVALDFSSGF 129
Query: 131 PKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS 190
+ + + D+ I ++IL P ++ P + +E +I +HPL I ++++
Sbjct: 130 GFEPLPALLAGELDLVITSDIL-PRSEVHYEPLFDFEMRLITATNHPLADKAGIEPQDLA 188
Query: 191 NYPLITYDLSFSGRIKLDREF 211
+ ++TY + R+ + + F
Sbjct: 189 DQTMLTYPVQ-KQRLDVVKHF 208
>TIGR_CMR|VC_1706 [details] [associations]
symbol:VC_1706 "transcriptional activator MetR" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039
PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR005119 InterPro:IPR011991 GO:GO:0006351 KO:K03576
OMA:PHQTTLR PIR:G82167 RefSeq:NP_231342.1 ProteinModelPortal:Q9KRD6
DNASU:2613711 GeneID:2613711 KEGG:vch:VC1706 PATRIC:20082472
ProtClustDB:CLSK874510 Uniprot:Q9KRD6
Length = 305
Score = 114 (45.2 bits), Expect = 0.00038, P = 0.00038
Identities = 40/201 (19%), Positives = 89/201 (44%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLTKPGQAILRSIE 71
++R +LT A +L+ +Q +S R + +R T G+ +LR +
Sbjct: 12 SLRDTGSLTATATSLHLTQSALSHQIKDLEARIGGQLFLRKTRPVR-FTAEGEILLRLAD 70
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATT-HTQARYALPKIIKEFTIQFPKVKLSLLQGN 130
I+ ++ + G L +A H+ ++ +P + +E+ + +P V L G
Sbjct: 71 DILPKMSRAENELASLKEDVNGRLHMAIECHSCFQWLMPAL-REYQVSWPNVALDFSSGF 129
Query: 131 PKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS 190
+ + + D+ I ++IL P ++ P + +E +I +HPL I ++++
Sbjct: 130 GFEPLPALLAGELDLVITSDIL-PRSEVHYEPLFDFEMRLITATNHPLADKAGIEPQDLA 188
Query: 191 NYPLITYDLSFSGRIKLDREF 211
+ ++TY + R+ + + F
Sbjct: 189 DQTMLTYPVQ-KQRLDVVKHF 208
>UNIPROTKB|P0ACR7 [details] [associations]
symbol:yfeR "predicted DNA-binding transcriptional
regulator, LYSR-type" species:83333 "Escherichia coli K-12"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039
PROSITE:PS50931 Pfam:PF03466 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
eggNOG:COG0583 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 HOGENOM:HOG000233514 PIR:H65014
RefSeq:NP_416904.1 RefSeq:YP_490644.1 ProteinModelPortal:P0ACR7
SMR:P0ACR7 IntAct:P0ACR7 PRIDE:P0ACR7
EnsemblBacteria:EBESCT00000003816 EnsemblBacteria:EBESCT00000014348
GeneID:12932245 GeneID:946873 KEGG:ecj:Y75_p2369 KEGG:eco:b2409
PATRIC:32120199 EchoBASE:EB3911 EcoGene:EG14159 OMA:RANIVQE
ProtClustDB:CLSK880925 BioCyc:EcoCyc:G7257-MONOMER
BioCyc:ECOL316407:JW2400-MONOMER Genevestigator:P0ACR7
Uniprot:P0ACR7
Length = 308
Score = 114 (45.2 bits), Expect = 0.00039, P = 0.00039
Identities = 52/249 (20%), Positives = 104/249 (41%)
Query: 2 NLHQFR-FVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
+L Q + FV A ++F+ A + + SQ VS + R + + LT
Sbjct: 4 SLKQLKVFVTVAQEKSFS--RAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVV-LT 60
Query: 61 KPGQAILRSIEIIMQEIEG-LKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
GQ + +E ++ E+ L+ G+ +G + +A + T + + +P+ I E ++
Sbjct: 61 DAGQQLALRLERLLDELNSTLRDTGR-MGQQLSGKVRVAASQTISAHLIPQCIAESHRRY 119
Query: 120 PKVKLSLLQGNPKQ-ITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPL 178
P ++ +L P+Q + E IR D IV + P L + ++ D L
Sbjct: 120 PDIQF-VLHDRPQQWVMESIRQGDVDFGIVIDP-GPVGDLQCEAILSEPFFLLCHRDSAL 177
Query: 179 LLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRM 238
+ + + + + L+ D + R +D + + IV E + + V +
Sbjct: 178 AVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGI 237
Query: 239 GIGIIASIA 247
GI I+ ++A
Sbjct: 238 GISILPALA 246
>TIGR_CMR|SO_1046 [details] [associations]
symbol:SO_1046 "transcriptional regulator, LysR family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000233514 RefSeq:NP_716674.1
ProteinModelPortal:Q8EI07 GeneID:1168884 KEGG:son:SO_1046
PATRIC:23521737 OMA:VMILPRS ProtClustDB:CLSK906059 Uniprot:Q8EI07
Length = 296
Score = 113 (44.8 bits), Expect = 0.00046, P = 0.00046
Identities = 41/206 (19%), Positives = 96/206 (46%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXR--HGKRIRG 58
M+L R+ E + +A++ ++ +QP +SKA R G +++
Sbjct: 1 MDLKVLRYFIEIIDAG-GFGKASEKVHLTQPALSKAVRQLEEELDLVLLERGKRGTQVK- 58
Query: 59 LTKPGQAILR-SIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTI 117
LT+ G+ + R E++ L ++ + S G L + + +I ++
Sbjct: 59 LTQAGEVVYRHGKELLAGRQRMLAELSAQRSL-TAGELRLGLAPLGSAEIFAPVIAKYRQ 117
Query: 118 QFPKVKLSLL-QGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDH 176
Q+P++++ LL +G +Q T I+ + ++A T I++ D I + V+++P ++
Sbjct: 118 QYPQIEMHLLVRGGVEQ-TLAIQKGEIELA--TGIINFDDGYDGIRVFNDPMVVVLPKEN 174
Query: 177 PLLLLNSISLKEISNYPLITYDLSFS 202
PL +S+ ++ + P + ++ ++
Sbjct: 175 PLTAREMLSIHDLIDEPQVMFETEYT 200
>UNIPROTKB|P77559 [details] [associations]
symbol:ynfL "predicted DNA-binding transcriptional
regulator" species:83333 "Escherichia coli K-12" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000847 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50931
Pfam:PF03466 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 eggNOG:COG0583 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR005119 InterPro:IPR011991
GO:GO:0006351 HOGENOM:HOG000233514 PIR:E64915 RefSeq:NP_416112.1
RefSeq:YP_489858.1 ProteinModelPortal:P77559 SMR:P77559
DIP:DIP-12771N IntAct:P77559 PRIDE:P77559
EnsemblBacteria:EBESCT00000001120 EnsemblBacteria:EBESCT00000017281
GeneID:12930126 GeneID:946136 KEGG:ecj:Y75_p1571 KEGG:eco:b1595
PATRIC:32118492 EchoBASE:EB3611 EcoGene:EG13850 OMA:DLGVMRN
ProtClustDB:CLSK880141 BioCyc:EcoCyc:G6853-MONOMER
BioCyc:ECOL316407:JW1587-MONOMER Genevestigator:P77559
Uniprot:P77559
Length = 297
Score = 113 (44.8 bits), Expect = 0.00046, P = 0.00046
Identities = 56/251 (22%), Positives = 101/251 (40%)
Query: 1 MNLHQFRFVRE--AVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRG 58
MN+ + R +R AV + + AA L SQP +S+ R + +
Sbjct: 1 MNI-ELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLLARTNRSVL- 58
Query: 59 LTKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARY--ALPKIIKEFT 116
LT G+ L I+ ++ + + G L I T + A + A+ + F
Sbjct: 59 LTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFT-SSAPFIRAVSDTLSLFR 117
Query: 117 IQFPKVKLSLLQGNPK-QITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLD 175
+P V L + N + QI +I D+ ++ P ++ ++ + ++P D
Sbjct: 118 RDYPDVHLQTREMNTREQIAPLIEGT-LDMGLLRNTALPESLEHAVIVHE-PLMAMIPHD 175
Query: 176 HPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQK---LTPYIVLETINSDIIKT 232
HPL +++L E++ P + +D G D L + LTP I E + I
Sbjct: 176 HPLANNPNVTLAELAKEPFVFFD-PHVGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIG 234
Query: 233 YVELRMGIGII 243
V +G+ I+
Sbjct: 235 LVSAGLGVSIL 245
>TIGR_CMR|SPO_A0446 [details] [associations]
symbol:SPO_A0446 "transcriptional regulator, LysR family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 Pfam:PF00126
PRINTS:PR00039 PROSITE:PS50931 Pfam:PF03466 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR005119
InterPro:IPR011991 GO:GO:0006351 EMBL:CP000032
GenomeReviews:CP000032_GR HOGENOM:HOG000233514 RefSeq:YP_165273.1
ProteinModelPortal:Q5LKD5 GeneID:3196799 KEGG:sil:SPOA0446
PATRIC:23382244 OMA:RDETFET Uniprot:Q5LKD5
Length = 298
Score = 113 (44.8 bits), Expect = 0.00047, P = 0.00047
Identities = 59/281 (20%), Positives = 111/281 (39%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAXXXXXXXXXXXXXXRHGKRIRGLT 60
+ L Q+ +V AV ++ +L+ AA AL SQP +S A R +T
Sbjct: 4 LTLRQYEYVC-AVGRHGSLSAAAAALNVSQPALSAALTKIESHLSQPLFMRRRGSAMAVT 62
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ + + E ++ + ++ A +L T A + L + P
Sbjct: 63 PAGRRFITAAEALLSDAARIEDPAHPRPARRQLHLGCFTD--LAPFLLAPALHALRRALP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V +S + + + Q D+A+ + L P YQ ++ DHPL
Sbjct: 121 DVTISTRADGFEALISALLKGQIDLALTYD-LGLDAGFDRQPLYQSHPQAVMAPDHPLAQ 179
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
L+ ++ +PLI D S + L F + L P + +++++ G+
Sbjct: 180 GTDPDLEALTAHPLILSDEGLSAQHMLGL-FRRRGLAPVVAHRAATLELLRSLAAHGEGV 238
Query: 241 GI-IASIAFDSNRDKNLRSISASHLFGTTISRVII--KQGT 278
GI A+ A ++ D R + + + G ++ +I + GT
Sbjct: 239 GISYAAPAHPASYDG--RPLLSRPIAGADLAESVILARHGT 277
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 306 292 0.00090 115 3 11 22 0.49 33
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 83
No. of states in DFA: 592 (63 KB)
Total size of DFA: 173 KB (2101 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:05
No. of threads or processors used: 24
Search cpu time: 24.30u 0.06s 24.36t Elapsed: 00:00:29
Total cpu time: 24.32u 0.06s 24.38t Elapsed: 00:00:34
Start: Thu Aug 15 10:52:02 2013 End: Thu Aug 15 10:52:36 2013