BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3761
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 296 bits (757), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 67
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 68 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 127
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 128 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYD 187
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 188 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 247
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 248 LTLRKDDTIPA 258
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 296 bits (757), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 66
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 67 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 126
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 127 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYD 186
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 187 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 246
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 247 LTLRKDDTIPA 257
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 296 bits (757), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 146/251 (58%), Positives = 190/251 (75%), Gaps = 9/251 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR AGKL+AE LD+I +KP VTT +N++CHN++ + N IPAPLNY KG FPK
Sbjct: 17 MRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITS-HNAIPAPLNY---KG---FPK 69
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
SICTS+N VVCHGIP +K LK GDI+NID+TVI +G+YGDTSRM+YVG+ ++ KRL +
Sbjct: 70 SICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQV 129
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+++ M GI ++PG LGDIGYAIQ +AEK+ YSVVR++ GHGIG+ FH++P ++NYG
Sbjct: 130 TYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILNYGR 189
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKE-IKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
GT LK GM FTVEPMIN G + I DGWT+ T+D+SLSAQ+EHT+ VTK+GFE+
Sbjct: 190 NGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEI 249
Query: 240 LTISP-NMPYP 249
T+SP + YP
Sbjct: 250 FTLSPKKLDYP 260
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 296 bits (757), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 67
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 68 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 127
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 128 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYD 187
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 188 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 247
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 248 LTLRKDDTIPA 258
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 296 bits (757), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 66
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 67 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 126
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 127 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYD 186
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 187 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 246
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 247 LTLRKDDTIPA 257
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 296 bits (757), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 66
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 67 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 126
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 127 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYD 186
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 187 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 246
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 247 LTLRKDDTIPA 257
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 66
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 67 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 126
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 127 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYD 186
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 187 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 246
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 247 LTLRKDDTIPA 257
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 67
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 68 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 127
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 128 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYD 187
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 188 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 247
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 248 LTLRKDDTIPA 258
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 67
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 68 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 127
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 128 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYD 187
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 188 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 247
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 248 LTLRKDDTIPA 258
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 66
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 67 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 126
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 127 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYD 186
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 187 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 246
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 247 LTLRKDDTIPA 257
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 11 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 64
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 65 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 124
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 125 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYD 184
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 185 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 244
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 245 LTLRKDDTIPA 255
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 295 bits (755), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 195/251 (77%), Gaps = 7/251 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 67
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 68 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 127
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 128 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYD 187
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 188 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 247
Query: 240 LTISPNMPYPS 250
LT+ + P+
Sbjct: 248 LTLRKDDTIPA 258
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 291 bits (745), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/243 (58%), Positives = 185/243 (76%), Gaps = 8/243 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR AGKL+AE LD+I +KP VTT +N++CHN++ + N IPAPLNY KG FPK
Sbjct: 17 MRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITS-HNAIPAPLNY---KG---FPK 69
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
SICTS+N VVCHGIP +K LK GDI+NID+TVI +G+YGDTSRM+YVG+ ++ KRL +
Sbjct: 70 SICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQV 129
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+++ M GI ++PG LGDIGYAIQ +AEK+ YSVVR++ GHGIG+ FH++P ++NYG
Sbjct: 130 TYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILNYGR 189
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKE-IKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
GT LK GM FTVEPMIN G + I DGWT+ T+D+SLSAQ+EHT+ VTK+GFE+
Sbjct: 190 NGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEI 249
Query: 240 LTI 242
T+
Sbjct: 250 FTL 252
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+ +L+ EVLD A IKPGVTTEEI+ H + +N P+PLNY FPK
Sbjct: 60 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACI-ARNCYPSPLNY------YNFPK 112
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S CTSVN+V+CHGIP + L++GDI+N+DIT+ +NGY+GD + F+VGE A++L
Sbjct: 113 SCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQT 172
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
++EC+ I +KPG+ ++G IQKHA+ G+SVVR +CGHGI K FH P V +Y
Sbjct: 173 TYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 232
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
+ +K+G +FT+EPMI EG + + DGWT T+D SAQ+EHT+LVT G E+L
Sbjct: 233 NKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEIL 292
Query: 241 T 241
T
Sbjct: 293 T 293
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 230 bits (587), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+ +L+ EVLD A IKPGVTTEEI+ H + +N P+PLNY FPK
Sbjct: 59 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACI-ARNCYPSPLNY------YNFPK 111
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S CTSVN+V+CHGIP + L++GDI+N+DIT+ +NGY+GD + F+VGE A++L
Sbjct: 112 SCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQT 171
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
++EC+ I +KPG+ ++G IQKHA+ G+SVVR +CGHGI K FH P V +Y
Sbjct: 172 TYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 231
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
+ +K+G +FT+EPMI EG + + DGWT T+D SAQ+EHT+LVT G E+L
Sbjct: 232 NKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEIL 291
Query: 241 T 241
T
Sbjct: 292 T 292
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 230 bits (587), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+ +L+ EVLD A IKPGVTTEEI+ H + +N P+PLNY FPK
Sbjct: 84 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACI-ARNCYPSPLNY------YNFPK 136
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S CTSVN+V+CHGIP + L++GDI+N+DIT+ +NGY+GD + F+VGE A++L
Sbjct: 137 SCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQT 196
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
++EC+ I +KPG+ ++G IQKHA+ G+SVVR +CGHGI K FH P V +Y
Sbjct: 197 TYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 256
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
+ +K+G +FT+EPMI EG + + DGWT T+D SAQ+EHT+LVT G E+L
Sbjct: 257 NKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEIL 316
Query: 241 T 241
T
Sbjct: 317 T 317
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 207 bits (526), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+++A L + PGVTT+E++ I H Y+V+ P+ L Y KG FPK
Sbjct: 53 MRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVD-NGAYPSTLGY---KG---FPK 105
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S CTS+N+V+CHGIP + ++ GDI+NID+T G +GDT+ F G+ + + L D
Sbjct: 106 SCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDR 165
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ E I +KPG L IG I+ +A ++GY+VVR+F GHGIG FH V++Y
Sbjct: 166 TREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQ 225
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
P ++ GM FT+EPMIN G + + DGWT+ TKDR +AQ+EHT+LVT G E+L
Sbjct: 226 PAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEIL 285
Query: 241 T 241
T
Sbjct: 286 T 286
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 206 bits (525), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+++A L + PGVTT+E++ I H Y+V+ P+ L Y KG FPK
Sbjct: 56 MRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVD-NGAYPSTLGY---KG---FPK 108
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S CTS+N+V+CHGIP + ++ GDI+NID+T G +GDT+ F G+ + + L D
Sbjct: 109 SCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDR 168
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ E I +KPG L IG I+ +A ++GY+VVR+F GHGIG FH V++Y
Sbjct: 169 TREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQ 228
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
P ++ GM FT+EPMIN G + + DGWT+ TKDR +AQ+EHT+LVT G E+L
Sbjct: 229 PAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEIL 288
Query: 241 T 241
T
Sbjct: 289 T 289
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 206 bits (525), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+++A L + PGVTT+E++ I H Y+V+ P+ L Y KG FPK
Sbjct: 50 MRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVD-NGAYPSTLGY---KG---FPK 102
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S CTS+N+V+CHGIP + ++ GDI+NID+T G +GDT+ F G+ + + L D
Sbjct: 103 SCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDR 162
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ E I +KPG L IG I+ +A ++GY+VVR+F GHGIG FH V++Y
Sbjct: 163 TREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQ 222
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
P ++ GM FT+EPMIN G + + DGWT+ TKDR +AQ+EHT+LVT G E+L
Sbjct: 223 PAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEIL 282
Query: 241 T 241
T
Sbjct: 283 T 283
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 203 bits (516), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 149/241 (61%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+++A L + PGVTT+E++ I H Y+V+ P+ L Y KG FPK
Sbjct: 56 MRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVD-NGAYPSTLGY---KG---FPK 108
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S TS+N+V+CHGIP + ++ GDI+NID+T G +GDT+ F G+ + + L D
Sbjct: 109 SCSTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDR 168
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ E I +KPG L IG I+ +A ++GY+VVR+F GHGIG FH V++Y
Sbjct: 169 TREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQ 228
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
P ++ GM FT+EPMIN G + + DGWT+ TKDR +AQ+EHT+LVT G E+L
Sbjct: 229 PAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEIL 288
Query: 241 T 241
T
Sbjct: 289 T 289
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 200 bits (508), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 145/236 (61%), Gaps = 7/236 (2%)
Query: 6 KLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPKSICTS 65
+LS EVLD KPG+TT+E++ I H V +N P+PLNY FPKS+CTS
Sbjct: 77 QLSREVLDIATAAAKPGITTDELDRIVHEATVE-RNMYPSPLNY------YGFPKSVCTS 129
Query: 66 VNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISFECM 125
VN+V+CHGIP ++ L++GDILNID++ NG++GD + ++G P + RL ++EC+
Sbjct: 130 VNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAAYECL 189
Query: 126 WIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGIPGTLE 185
GI +KP +G AI+ A +Y SVVR + GHG+G FH P V +Y +L
Sbjct: 190 CAGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCHYANNKSLG 249
Query: 186 KLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVLT 241
++ G +FT+EPMIN G + D WT TKD SAQ+EHT++VT G E+ T
Sbjct: 250 MMRPGHVFTIEPMINLGTWQDVTWPDKWTSTTKDGRRSAQFEHTMVVTNGGVEIFT 305
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 142/244 (58%), Gaps = 10/244 (4%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+R A L + LDY + PGVTT+EI+ H +++ N P+ LNY FPK
Sbjct: 112 IREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIK-NNAYPSTLNY------YKFPK 164
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLV---AKRL 117
S CTSVN++VCHGIP + LK GDI+NIDI+V G + D + ++VG+ + V K L
Sbjct: 165 SCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKEL 224
Query: 118 SDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMN 177
+ + + I K KPG+ +IG I + K +SVVR + GHG+GK FH P V +
Sbjct: 225 VETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPH 284
Query: 178 YGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGF 237
+ + +K G +FT+EPMIN+G D WT T D LSAQ+EHT+L+T NG
Sbjct: 285 FKKNKAVGIMKPGHVFTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNGV 344
Query: 238 EVLT 241
E+LT
Sbjct: 345 EILT 348
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 143/241 (59%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
M +G+L A+V ++ FIKPG+T+ +I V +++ I + Q G +
Sbjct: 13 MDESGELLADVHRHLRTFIKPGITSWDIE-------VFVRDFIESHGGVAAQIGYEGYKY 65
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
+ C S+ND +CHG P K+LK GD++ +D+ V G D+ + VGE + RL ++
Sbjct: 66 ATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEV 125
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ + +++GI + + G +GDIG+AIQ + E GY VVR+F GHGIG HE P + +YG
Sbjct: 126 TKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHYGE 185
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
G +LK GM+ T+EPM+N G +K +GWT T+D LS Q+EH++ +TK G +L
Sbjct: 186 AGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRIL 245
Query: 241 T 241
T
Sbjct: 246 T 246
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 139/242 (57%), Gaps = 8/242 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
M+ AGK A L + I PG T ++ + ++ PA Y GG +
Sbjct: 25 MKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLR-VKPAFKGY----GGYKY-- 77
Query: 61 SICTSVNDVVCHGIP-GNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
+ C SVN+ V HG+P K+ K+GDI+++D+ + G YGD + + VGE K L
Sbjct: 78 ATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVR 137
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
++ E + I IKPGI LGD+ + IQ+ E G++V+R++ GHG+G+ HE+P++ NYG
Sbjct: 138 VTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYG 197
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
PGT L+ GM +EPM++EG + DGWT T D S A +EHT+L+T+NG E+
Sbjct: 198 TPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEI 257
Query: 240 LT 241
LT
Sbjct: 258 LT 259
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 9/234 (3%)
Query: 5 GKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPKSICT 64
G + A+V + + KPG+TT+E++ I + I AP++ FP C
Sbjct: 16 GYICAKVRNTMQAATKPGITTKELDNIAKE-LFEEYGAISAPIH------DENFPGQTCI 68
Query: 65 SVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSL-VAKRLSDISFE 123
SVN+ V HGIP +++++GD++NID++ +KNGYY DT F VGE + +++ D++
Sbjct: 69 SVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATM 128
Query: 124 CMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEP-RVMNYGIPG 182
I K+KPG L +IG A+ A + V++ GHG+G + HE P V+NY P
Sbjct: 129 AFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPK 188
Query: 183 TLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNG 236
L GM+ +EP I+ + E + W +T D+S AQ EHTV+VTK+G
Sbjct: 189 DKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG 242
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 137/251 (54%), Gaps = 14/251 (5%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
M AG + L + K GV+T E++++ + ++ +P+ L Y FP
Sbjct: 43 MAAAGSIVGAALVAVRDAAKAGVSTLELDQVAES-VIREAGAVPSFLGYHG------FPA 95
Query: 61 SICTSVNDVVCHGIP-GNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
SIC+SVND V HGIP +L GD+++ID I +G++GD++ F VG + LS+
Sbjct: 96 SICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSE 155
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQ---KHAEKY---GYSVVREFCGHGIGKNFHEEP 173
+ M GI + PG L D+ +AI+ + AEK + +V + GHGIG++ H +P
Sbjct: 156 ATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSMHLDP 215
Query: 174 RVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVT 233
+ N G PG L G + +EPM+ G + + ++D WT+ T D S +A WEHTV VT
Sbjct: 216 FLPNEGAPGKGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVT 275
Query: 234 KNGFEVLTISP 244
+ G +LT+ P
Sbjct: 276 EAGPRILTMRP 286
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 25/206 (12%)
Query: 40 QNTIPAPLNYCPQKGGI---PFPKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNG 96
+ + A + Y + G F I + + HG+ +K +++GD++ ID+ +
Sbjct: 160 EREVAAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQH 219
Query: 97 YYGDTSRMFYVGEPSLVAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGY-S 155
Y D +R VG P+ K + +I E + KPGI ++ + +YGY
Sbjct: 220 YNSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYGE 279
Query: 156 VVREFCGHGIGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTI 215
GHG+G HE PRV Y T+ L+ GM+ T+EP I +
Sbjct: 280 YFNHSLGHGVGLEVHEWPRVSQY--DETV--LREGMVITIEPGI-------------YIP 322
Query: 216 KTKDRSLSAQWEHTVLVTKNGFEVLT 241
K + E T+L+TKNG + LT
Sbjct: 323 KIG----GVRIEDTILITKNGSKRLT 344
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 25/206 (12%)
Query: 40 QNTIPAPLNYCPQKGGI---PFPKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNG 96
+ + A + Y + G F I + + HG+ +K +++GD++ ID+ + N
Sbjct: 157 EREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNH 216
Query: 97 YYGDTSRMFYVGEPSLVAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGY-S 155
Y D +R VG P+ + + +I E + KPG+ ++ ++ ++YGY
Sbjct: 217 YNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGD 276
Query: 156 VVREFCGHGIGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTI 215
GHG+G HE PR+ Y T+ LK GM+ T+EP I I ++
Sbjct: 277 YFIHSLGHGVGLEIHEWPRISQY--DETV--LKEGMVITIEPGIY-----IPKLG----- 322
Query: 216 KTKDRSLSAQWEHTVLVTKNGFEVLT 241
+ E TVL+T+NG + LT
Sbjct: 323 -------GVRIEDTVLITENGAKRLT 341
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 4 AGKLSAEVLDYI-APFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPKSI 62
A K +AE++D + FI+ + + E+ + I+N A + F +
Sbjct: 158 AHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKNEFGAD--------DVSFEPIV 209
Query: 63 CTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISF 122
+ N H P ++ ++KGD++ D GY D +R VG PS K++ +I
Sbjct: 210 ASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVK 269
Query: 123 ECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGY-SVVREFCGHGIGKNFHEEPRVMNYGIP 181
E + K+ GI + + KYGY GHG+G + HEEP Y P
Sbjct: 270 EAQETAVQKVAEGIPAEVVDATARGIISKYGYGEYFIHRTGHGLGIDVHEEP----YISP 325
Query: 182 GTLEKLKTGMIFTVEPMI 199
G + LK GM+FT+EP I
Sbjct: 326 GNKKILKDGMVFTIEPGI 343
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 31/207 (14%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
++ A +++ ++I FI+PGV+ E++ +M T + F
Sbjct: 139 LKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS------------FDI 186
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
+ + + + HG+ K+++ GD + +D GY D +R VGEPS K + +I
Sbjct: 187 IVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNI 246
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQK-------HAEKYGYSVVREFCGHGIGKNFHEEP 173
E G+ IK G+ G A+ + + E +G+S GHGIG HE P
Sbjct: 247 VLEAQLRGVNGIKAGL-TGREADALTRDYITEKGYGEYFGHS-----TGHGIGLEIHEAP 300
Query: 174 RVMNYGIPGTLEK-LKTGMIFTVEPMI 199
G+ + L+ GM TVEP I
Sbjct: 301 -----GLAFRSDTVLEPGMAVTVEPGI 322
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 24/211 (11%)
Query: 4 AGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIP-FPKSI 62
AG+++ +V + +PG+ E+ E ++ + GG P FP +
Sbjct: 9 AGEIAKKVREKAIKLARPGMLLLELAESIEKMIMEL--------------GGKPAFP--V 52
Query: 63 CTSVNDVVCHGIP---GNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+N++ H P +LK+GD L ID+ V +G+ DT+ VG + L +
Sbjct: 53 NLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVG---MEEDELME 109
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGK-NFHEEPRVMNY 178
+ E + I + G+ + ++G AI+ K G+ + GH I + H + N
Sbjct: 110 AAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNI 169
Query: 179 GIPGTLEKLKTGMIFTVEPMINEGRKEIKEM 209
P LK G +F +EP G ++ E+
Sbjct: 170 YRPHDNYVLKEGDVFAIEPFATIGAGQVIEV 200
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 24/211 (11%)
Query: 4 AGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIP-FPKSI 62
AG+++ +V + +PG+ E+ E ++ + GG P FP +
Sbjct: 9 AGEIAKKVREKAIKLARPGMLLLELAESIEKMIMEL--------------GGKPAFP--V 52
Query: 63 CTSVNDVVCHGIP---GNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+N++ H P +LK+GD L ID+ V +G+ DT+ VG + L +
Sbjct: 53 NLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVG---MEEDELME 109
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGK-NFHEEPRVMNY 178
+ E + I + G+ + ++G AI+ K G+ + GH I + H + N
Sbjct: 110 AAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNI 169
Query: 179 GIPGTLEKLKTGMIFTVEPMINEGRKEIKEM 209
P LK G +F +EP G ++ E+
Sbjct: 170 YRPHDNYVLKEGDVFAIEPFATIGAGQVIEV 200
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 35/218 (16%)
Query: 40 QNTIPAPLNYCPQKGG---IPFPKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNG 96
+ I A L Y +K G + F + + + HG +K++++GD++ ID
Sbjct: 166 EKEIAALLEYTMRKEGAEGVAFDTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYEN 225
Query: 97 YYGDTSRMFYVGEPSLVAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSV 156
Y D +R+ +GEPS K + I E + K G+ + ++ + GY
Sbjct: 226 YCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYG- 284
Query: 157 VREF----CGHGIGKNFHEEPRV-MNYGIPGTLEKLKTGMIFTVEPMIN-EGRKEIKEMS 210
EF GHGIG HE P + P L ++FTVEP I EG+
Sbjct: 285 --EFFGHSLGHGIGLEVHEGPAISFRNDSP-----LPENVVFTVEPGIYLEGK------- 330
Query: 211 DGWTIKTKDRSLSAQWEHTVLVTKNGFEVLTISPNMPY 248
+ E V++ + G E+LT P +
Sbjct: 331 -----------FGIRIEEDVVLKEQGCEILTTLPRSIF 357
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 55 GIPFPKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVA 114
GI F + + N H PG + ++KGDI+ +D GY D +R +GE
Sbjct: 181 GIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERL 240
Query: 115 KRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGY-SVVREFCGHGIGKNFHEEP 173
++ ++ + ++ GI D+ ++ K GY GHG+G + HEEP
Sbjct: 241 VKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYGEYFIHRTGHGLGLDVHEEP 300
Query: 174 RVMNYGIPGTLEKLKTGMIFTVEPMI 199
Y P LK GM FT+EP I
Sbjct: 301 ----YIGPDGEVILKNGMTFTIEPGI 322
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 31/166 (18%)
Query: 77 NKILKKGDILNIDIT-VIKNGYYGDTSRMFYVGEPSL-VAKRLSDISFECMWIGIVKIKP 134
++ L+ GDI+ +DI + GYY D++R + +G+PS VA++ S + + ++P
Sbjct: 222 DRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQ-RAQRAAVDAVRP 280
Query: 135 GIHLGDIGYAIQKHAEKYG---YSVVREFCGHGIGKNFHEEPRVMNYGIPGTLEKLKTGM 191
G+ + A + G Y V R GHGIG HEEP Y + G L GM
Sbjct: 281 GVTAAQVDAAARDVLADAGLAEYFVHR--TGHGIGLCVHEEP----YIVAGNELPLVAGM 334
Query: 192 IFTVEPMIN-EGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNG 236
F++EP I GR W A+ E V+VT+NG
Sbjct: 335 AFSIEPGIYFPGR---------W---------GARIEDIVVVTENG 362
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 17/184 (9%)
Query: 53 KGGIPFPKSICTSVNDVVCHGIP----GNKILKKGDILNIDITVIKNGYYGDTSRMFYVG 108
K GI FP SI SVN+ VCH P + ILK+GD++ ID+ V +G+ + + F +G
Sbjct: 64 KKGIAFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIG 121
Query: 109 --EPSLVAKRLSDI---SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGH 163
+ + V R +D+ + C + +KPG + A K A + + + H
Sbjct: 122 VAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSH 181
Query: 164 GIGKNFHEEPRVMNYGIPGTLEK------LKTGMIFTVEPMINEGRKEIKEMSDGWTIKT 217
+ ++ + + + +K + ++ V+ +++ G + K+ TI
Sbjct: 182 QLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYK 241
Query: 218 KDRS 221
+D S
Sbjct: 242 RDPS 245
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 53 KGGIPFPKSICTSVNDVVCHGIP----GNKILKKGDILNIDITVIKNGYYGDTSRMFY-- 106
K GI FP SI SVN+ VCH P + ILK+GD++ ID+ V +G+ + + F
Sbjct: 71 KKGIAFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVD 128
Query: 107 VGEPSLVAKRLSDI---SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGH 163
V + + V R +D+ + C + +KPG + A K A + + + H
Sbjct: 129 VAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSH 188
Query: 164 GIGKN 168
+ ++
Sbjct: 189 QLKQH 193
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 53 KGGIPFPKSICTSVNDVVCHGIP----GNKILKKGDILNIDITVIKNGYYGDTSRMFY-- 106
K GI FP SI SVN+ VCH P + ILK+GD++ ID+ V +G+ + + F
Sbjct: 78 KKGIAFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVD 135
Query: 107 VGEPSLVAKRLSDI---SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGH 163
V + + V R +D+ + C + +KPG + A K A + + + H
Sbjct: 136 VAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSH 195
Query: 164 GIGKN 168
+ ++
Sbjct: 196 QLKQH 200
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Query: 64 TSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISFE 123
+ +N H + + KGDIL+++ + GYY R ++ S RL ++ E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 124 CMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREF-CGHGIGKNFHEEPRVMNYGIPG 182
G+ IKPG DI + + K+ R F GH G H R +
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELRE 342
Query: 183 TLEK-LKTGMIFTVEPMI 199
++ L+ GM+ ++EPMI
Sbjct: 343 DIDTVLEPGMVVSMEPMI 360
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Query: 64 TSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISFE 123
+ +N H + + KGDIL+++ + GYY R ++ S RL ++ E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 124 CMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREF-CGHGIGKNFHEEPRVMNYGIPG 182
G+ IKPG DI + + K+ R F GH G H R +
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELRE 342
Query: 183 TLEK-LKTGMIFTVEPMI 199
++ L+ GM+ ++EPMI
Sbjct: 343 DIDTVLEPGMVVSMEPMI 360
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 44/203 (21%)
Query: 67 NDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECM 125
N + H ++ GD++ ID GY GD +R F V G+ + + + DI E +
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 126 WIGIVKIKPGIHL----------------------GDIGYAIQKHAEKYGYSVVREFCGH 163
+ +PG + GD+ I ++A R F H
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH-------RPFFMH 350
Query: 164 GIGKNFHEEPRVMNYGIPGTLEK--LKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTKDR 220
G+ + V + G+ G L+ GM+ TVEP + E+ E G I+ +D
Sbjct: 351 GLSHWLGLD--VADVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIED- 407
Query: 221 SLSAQWEHTVLVTKNGFEVLTIS 243
+++T+ G E LT S
Sbjct: 408 --------DIVITETGNENLTAS 422
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 90/216 (41%), Gaps = 41/216 (18%)
Query: 43 IPAPLNYCPQKGGI---PFPKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYG 99
+ A ++ + GI F + + N V H + ++ GD++ +D+ K+ Y
Sbjct: 207 LEAQFDFTLKSSGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNA 266
Query: 100 DTSRMFYV-GEPSLVAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVR 158
D S F G S K++ +I + IKPG+ A+ +HA+K V+
Sbjct: 267 DISYTFPANGTFSSRQKQIYNIVLNALKETTEIIKPGLKFA----ALNEHAKK----VLA 318
Query: 159 EFC-GHGIGKNFHEEPRVMNYGIP----------GTLEK--LKTGMIFTVEPMINEGRKE 205
E C G+ + E + +G+ GT + L+ G + T+EP
Sbjct: 319 EGCKAVGLIQEDEELSKYYYHGVSHFLGLDTHDVGTYKDRVLEEGXVITIEP-------- 370
Query: 206 IKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVLT 241
G I ++ S+ + E +LVTK+G E L+
Sbjct: 371 ------GLYI--EEESIGIRIEDDILVTKDGHENLS 398
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEIN---EICHNYMVNIQNTIPAPLNYCPQKGGIP 57
R A + +V Y+ +IKPG+T EI E C ++ +N + A G+
Sbjct: 61 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIK-ENGLNA---------GLA 110
Query: 58 FPKSICTSVNDVVCHGIPG---NKILKKGDILNIDITVIKNGYYGDTS-RMFYVGEPSLV 113
FP S+N+ H P +L+ DI ID +G D + + + + +
Sbjct: 111 FPTGC--SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTL 168
Query: 114 AKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSV---------VREFCGHG 164
K + D + GI + L D+G AIQ+ E Y + +R GH
Sbjct: 169 LKAVKDATN----TGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHS 224
Query: 165 IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGR 203
IG+ + + G +++ G ++ +E + G+
Sbjct: 225 IGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGK 263
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 48/205 (23%)
Query: 67 NDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECM 125
N + H ++ GD++ ID GY GD +R F V G+ + + + DI E +
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 126 WIGIVKIKPGIHL----------------------GDIGYAIQKHAEKYGYSVVREFCGH 163
+ +PG + GD+ I ++A R F H
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH-------RPFFMH 350
Query: 164 G----IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTK 218
G +G + H+ V YG + L+ GM+ TVEP + E+ E G I+ +
Sbjct: 351 GLSHWLGLDVHD---VGVYGQDRS-RILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIE 406
Query: 219 DRSLSAQWEHTVLVTKNGFEVLTIS 243
D +++T+ G E LT S
Sbjct: 407 D---------DIVITETGNENLTAS 422
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEIN---EICHNYMVNIQNTIPAPLNYCPQKGGIP 57
R A + +V Y+ +IKPG+T EI E C ++ +N + A G+
Sbjct: 60 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIK-ENGLNA---------GLA 109
Query: 58 FPKSICTSVNDVVCHGIPG---NKILKKGDILNIDITVIKNGYYGDTS-RMFYVGEPSLV 113
FP S+N+ H P +L+ DI ID +G D + + + + +
Sbjct: 110 FPTGC--SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTL 167
Query: 114 AKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSV---------VREFCGHG 164
K + D + GI + L D+G AIQ+ E Y + +R GH
Sbjct: 168 LKAVKDATN----TGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHS 223
Query: 165 IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGR 203
IG+ + + G +++ G ++ +E + G+
Sbjct: 224 IGQYRIHAGKTVPIIKGGEATRMEEGEVYAIETFGSTGK 262
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEIN---EICHNYMVNIQNTIPAPLNYCPQKGGIP 57
R A + +V Y+ +IKPG+T EI E C ++ +N + A G+
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIK-ENGLNA---------GLA 218
Query: 58 FPKSICTSVNDVVCHGIPG---NKILKKGDILNIDITVIKNGYYGDTS-RMFYVGEPSLV 113
FP S+N+ H P +L+ DI ID +G D + + + + +
Sbjct: 219 FPTGC--SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTL 276
Query: 114 AKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSV---------VREFCGHG 164
K + D + GI + L D+G AIQ+ E Y + +R GH
Sbjct: 277 LKAVKDATN----TGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHS 332
Query: 165 IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGR 203
IG+ + + G +++ G ++ +E + G+
Sbjct: 333 IGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGK 371
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEIN---EICHNYMVNIQNTIPAPLNYCPQKGGIP 57
R A + +V Y+ +IKPG+T EI E C ++ +N + A G+
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIK-ENGLNA---------GLA 218
Query: 58 FPKSICTSVNDVVCHGIPG---NKILKKGDILNIDITVIKNGYYGDTS-RMFYVGEPSLV 113
FP S+N+ H P +L+ DI ID +G D + + + + +
Sbjct: 219 FPTGC--SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTL 276
Query: 114 AKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSV---------VREFCGHG 164
K + D + GI + L D+G AIQ+ E Y + +R GH
Sbjct: 277 LKAVKDATN----TGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHS 332
Query: 165 IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGR 203
IG+ + + G +++ G ++ +E + G+
Sbjct: 333 IGQYRIHAGKTVPIIKGGEATRMEEGEVYAIETFGSTGK 371
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 48/205 (23%)
Query: 67 NDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECM 125
N + H ++ GD++ ID GY GD +R F V G+ + + + DI E +
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 126 WIGIVKIKPGIHL----------------------GDIGYAIQKHAEKYGYSVVREFCGH 163
+ +PG + GD+ I ++A R F H
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH-------RPFFMH 350
Query: 164 G----IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTK 218
G +G + H+ V YG + L+ GM+ TVEP + E+ E G I+ +
Sbjct: 351 GLSHWLGLDVHD---VGVYGQDRS-RILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIE 406
Query: 219 DRSLSAQWEHTVLVTKNGFEVLTIS 243
D +++T+ G E LT S
Sbjct: 407 D---------DIVITETGNENLTAS 422
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 48/205 (23%)
Query: 67 NDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECM 125
N + H ++ GD++ ID GY GD +R F V G+ + + + DI E +
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 126 WIGIVKIKPGIHL----------------------GDIGYAIQKHAEKYGYSVVREFCGH 163
+ +PG + GD+ I ++A R F H
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH-------RPFFMH 350
Query: 164 G----IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTK 218
G +G + H+ V YG + L+ GM+ TVEP + E+ E G I+ +
Sbjct: 351 GLSHWLGLDVHD---VGVYGQDRS-RILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIE 406
Query: 219 DRSLSAQWEHTVLVTKNGFEVLTIS 243
D +++T+ G E LT S
Sbjct: 407 D---------DIVITETGNENLTAS 422
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 48/192 (25%)
Query: 80 LKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECMWIGIVKIKPGIHL 138
++ GD++ ID GY GD +R F V G+ + + + DI E + + +PG +
Sbjct: 252 MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSI 311
Query: 139 ----------------------GDIGYAIQKHAEK----YGYSVVREFCGHGIGKNFHEE 172
GD+ I ++A + +G S H +G +
Sbjct: 312 LEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSAWLGLDVHDVGVYGQDR 371
Query: 173 PRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVL 231
R+ L+ GM+ TVEP + E+ E G I+ +D ++
Sbjct: 372 SRI-----------LEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIED---------DIV 411
Query: 232 VTKNGFEVLTIS 243
+T+ G E LT S
Sbjct: 412 ITETGNENLTAS 423
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 48/192 (25%)
Query: 80 LKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECMWIGIVKIKPGIHL 138
++ GD++ ID GY GD +R F V G+ + + + DI E + + +PG +
Sbjct: 251 MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSI 310
Query: 139 ----------------------GDIGYAIQKHAEKYGYSVVREFCGHG----IGKNFHEE 172
GD+ I ++A R F HG +G + H+
Sbjct: 311 LEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH-------RPFFMHGLSHWLGLDVHD- 362
Query: 173 PRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVL 231
V YG + L+ GM+ TVEP + E+ E G I+ +D ++
Sbjct: 363 --VGVYGQDRS-RILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIED---------DIV 410
Query: 232 VTKNGFEVLTIS 243
+T+ G E LT S
Sbjct: 411 ITETGNENLTAS 422
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 40/201 (19%)
Query: 67 NDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECM 125
N + H ++ GD++ ID GY GD +R F V G+ + + + DI E +
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 126 WIGIVKIKPGIHL----------------------GDIGYAIQKHAEKYGYSVVREFCGH 163
+ +PG + GD+ I ++A + + H
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMA---GLSH 354
Query: 164 GIGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTKDRSL 222
+G + H+ V YG + L+ GM+ TVEP + E+ E G I+ +D
Sbjct: 355 WLGLDVHD---VGVYGQDRS-RILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIED--- 407
Query: 223 SAQWEHTVLVTKNGFEVLTIS 243
+++T+ G E LT S
Sbjct: 408 ------DIVITETGNENLTAS 422
>pdb|4B28|A Chain A, Crystal Structure Of Dmsp Lyase Rddddp From Roseobacter
Denitrificans
Length = 470
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 34/183 (18%)
Query: 76 GNKILKKGDILNIDITVIKNGYYG---DTSRMFYVGEPSLVAKRLSDIS--FECMWIGIV 130
G ++ ++ +I++ D ++ G YG D SR +++G+ A + + E + +
Sbjct: 305 GPRVCQRNEIISFDTDLV--GAYGICTDISRSWWIGDQKPRADMIYAMQHGVEHIRTNME 362
Query: 131 KIKPGIHLGDIG---YAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVM--NYGIPGTLE 185
+KPG+ + ++ + + +K Y + HG+G E P V ++ + G +
Sbjct: 363 MLKPGVMIPELSANTHVLDAKFQKQKYGCLM----HGVGL-CDEWPLVAYPDHAVAGAYD 417
Query: 186 -KLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVLTISP 244
L+ GM VE +I+E E D ++IK +D+ VL+T++G+E LT P
Sbjct: 418 YPLEPGMTLCVEALISE------EGGD-FSIKLEDQ---------VLITEDGYENLTKYP 461
Query: 245 NMP 247
P
Sbjct: 462 FDP 464
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 67 NDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECM 125
N + H ++ GD++ ID GY GD +R F V G+ + + + DI E +
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 126 WIGIVKIKPGIHL----------------------GDIGYAIQKHAEKYGYSVVREFCGH 163
+ +PG + GD+ I ++A R F H
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH-------RPFFMH 350
Query: 164 G----IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTK 218
G +G + H+ V YG + L+ GM+ TV P + E+ E G I+ +
Sbjct: 351 GLSHWLGLDVHD---VGVYGQDRS-RILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIE 406
Query: 219 DRSLSAQWEHTVLVTKNGFEVLTIS 243
D +++T+ G E LT S
Sbjct: 407 D---------DIVITETGNENLTAS 422
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 67 NDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECM 125
N + H ++ GD++ ID GY GD +R F V G+ + + + DI E +
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 126 WIGIVKIKPGIHL----------------------GDIGYAIQKHAEKYGYSVVREFCGH 163
+ +PG + GD+ I ++A R F H
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH-------RPFFMH 350
Query: 164 G----IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTK 218
G +G + H+ V YG + L+ GM+ TV P + E+ E G I+ +
Sbjct: 351 GLSHWLGLDVHD---VGVYGQDRS-RILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIE 406
Query: 219 DRSLSAQWEHTVLVTKNGFEVLTIS 243
D +++T+ G E LT S
Sbjct: 407 D---------DIVITETGNENLTAS 422
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Query: 64 TSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISFE 123
+ +N H +++ +GDIL+++ + GYY R ++ + + +
Sbjct: 223 SGINTDGAHNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVXDASLXIWXKNTA 282
Query: 124 CMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREF-CGHGIGKNFHEEPRVMNYGIPG 182
G+ IKPG DI + + R F GH G H R +
Sbjct: 283 VHRRGLXLIKPGARCKDIASELNXMYRXWDLLRYRTFGYGHSFGVLXHYYGREAGVELRE 342
Query: 183 TLEK-LKTGMIFTVEPMI 199
+ L+ GM+ ++EPM+
Sbjct: 343 DIXTVLEPGMVVSMEPMV 360
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 67 NDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECM 125
N + H ++ GD++ I GY GD +R F V G+ + + + DI E +
Sbjct: 238 NGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 126 WIGIVKIKPGIHL----------------------GDIGYAIQKHAEKYGYSVVREFCGH 163
+ +PG + GD+ I ++A R F H
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH-------RPFFMH 350
Query: 164 G----IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTK 218
G +G + H+ V YG + L+ GM+ TVEP + E+ E G I+ +
Sbjct: 351 GLSHWLGLDVHD---VGVYGQDRS-RILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIE 406
Query: 219 DRSLSAQWEHTVLVTKNGFEVLTIS 243
D +++T+ G E LT S
Sbjct: 407 D---------DIVITETGNENLTAS 422
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 67 NDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFECM 125
N + H ++ GD++ ID GY G +R F V G+ + + + DI E +
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 126 WIGIVKIKPGIHL----------------------GDIGYAIQKHAEKYGYSVVREFCGH 163
+ +PG + GD+ I ++A R F H
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH-------RPFFMH 350
Query: 164 G----IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEP-MINEGRKEIKEMSDGWTIKTK 218
G +G + H+ V YG + L+ GM+ TVEP + E+ E G I+ +
Sbjct: 351 GLSHWLGLDVHD---VGVYGQDRS-RILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIE 406
Query: 219 DRSLSAQWEHTVLVTKNGFEVLTIS 243
D +++T+ G E LT S
Sbjct: 407 D---------DIVITETGNENLTAS 422
>pdb|2HSI|A Chain A, Crystal Structure Of Putative Peptidase M23 From
Pseudomonas Aeruginosa, New York Structural Genomics
Consortium
pdb|2HSI|B Chain B, Crystal Structure Of Putative Peptidase M23 From
Pseudomonas Aeruginosa, New York Structural Genomics
Consortium
Length = 282
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 90 ITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISFECMWIGIVKI----KPGIHLGDIGYAI 145
+ V+ G G R FY G+P LV + WI +V I KPG ++ A
Sbjct: 39 VAVVDLGEEGPPPRAFYQGKPVLVVREEGR-----RWIAVVGIPLSTKPGPQKLEVRAAT 93
Query: 146 QKHAEKY 152
H E++
Sbjct: 94 GNHEERF 100
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 67 NDVVCHGIPG--------NKILKKGDILNIDITVIKNGYYGDTSRMFY--VGEPSLVAKR 116
+D++ +PG N +K L + + I GDT+R+ +G P V ++
Sbjct: 393 SDILAFALPGFATGEHTKNNAIKLARALGVTFSEID---IGDTARLMLHTIGHPYSVGEK 449
Query: 117 LSDISFECMWIGI 129
+ D++FE + G+
Sbjct: 450 VYDVTFENVQAGL 462
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 67 NDVVCHGIPG--------NKILKKGDILNIDITVIKNGYYGDTSRMFY--VGEPSLVAKR 116
+D++ +PG N +K L + + I GDT+R+ +G P V ++
Sbjct: 393 SDILAFALPGFATGEHTKNNAIKLARALGVTFSEID---IGDTARLMLHTIGHPYSVGEK 449
Query: 117 LSDISFECMWIGI 129
+ D++FE + G+
Sbjct: 450 VYDVTFENVQAGL 462
>pdb|2Z22|X Chain X, Crystal Structure Of Phosphate Preplasmic Binding Protein
Psts From Yersinia Pestis
pdb|2Z22|A Chain A, Crystal Structure Of Phosphate Preplasmic Binding Protein
Psts From Yersinia Pestis
Length = 321
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 108 GEPSLVAKRLSDISFECM--WI--GIVKIKPGIHLGDIGYAIQKHAEKYGYSVV 157
GE +L K L DI + W IVK+ PG+ L D A+ + A+ G S V
Sbjct: 91 GELTLDGKTLGDIYLGTVKKWNDPAIVKLNPGVKLPDQNIAVVRRADGSGTSFV 144
>pdb|2QM6|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QMC|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|3FNM|A Chain A, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|C Chain C, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 377
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 132 IKPGIHLGDIGYAI-QKHAEKYG--------YSVVREFCGHGIGKNFHEEPRVMNYGIPG 182
I P I L + GYAI Q+ AE YS +++ ++ E + +
Sbjct: 157 IDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAK 216
Query: 183 TLEKLKT-GMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVLT 241
TL ++KT G + + E ++ + + G K S + +W V+ + G+++++
Sbjct: 217 TLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIIS 276
Query: 242 ISP 244
+SP
Sbjct: 277 MSP 279
>pdb|2NQO|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
Length = 376
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 132 IKPGIHLGDIGYAI-QKHAEKYG--------YSVVREFCGHGIGKNFHEEPRVMNYGIPG 182
I P I L + GYAI Q+ AE YS +++ ++ E + +
Sbjct: 156 IDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAK 215
Query: 183 TLEKLKT-GMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVLT 241
TL ++KT G + + E ++ + + G K S + +W V+ + G+++++
Sbjct: 216 TLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIIS 275
Query: 242 ISP 244
+SP
Sbjct: 276 MSP 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,420,378
Number of Sequences: 62578
Number of extensions: 367326
Number of successful extensions: 999
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 74
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)