RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3761
(256 letters)
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 421 bits (1084), Expect = e-151
Identities = 148/245 (60%), Positives = 192/245 (78%), Gaps = 7/245 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVLD I P +KPGVTT+E++ I Y+ + Q IPAPL Y FPK
Sbjct: 14 MRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRD-QGAIPAPLGY------HGFPK 66
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
SICTSVN+VVCHGIP +K+LK+GDI+NID+TVIK+GY+GDTSR F VGE S KRL ++
Sbjct: 67 SICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEV 126
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ E +++GI +KPG LGDIG+AIQK+AE G+SVVRE+CGHGIG+ FHEEP++ +YG
Sbjct: 127 TKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQIPHYGA 186
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
PG LK GM+FT+EPMIN G++E+K + DGWT+ TKD SLSAQ+EHTV VT++G E+L
Sbjct: 187 PGDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTEDGPEIL 246
Query: 241 TISPN 245
T+ P
Sbjct: 247 TLRPE 251
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 367 bits (946), Expect = e-130
Identities = 140/241 (58%), Positives = 183/241 (75%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR AG++ AEVLD +A IKPGVTT+E+++I H ++ PAPL Y FPK
Sbjct: 4 MREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEE-HGAYPAPLGY------YGFPK 56
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
SICTSVN+VVCHGIP +++LK GDI+NID+ V +GY+GD++R F VGE S AK+L ++
Sbjct: 57 SICTSVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEV 116
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ E ++ GI +KPG +GDIG+AI+K+AEK GYSVVREF GHGIG+ FHEEP++ NYG
Sbjct: 117 TEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGR 176
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
PGT KLK GM+FT+EPMIN G E+ + DGWT+ TKD SLSAQ+EHTVL+T++G E+L
Sbjct: 177 PGTGPKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEIL 236
Query: 241 T 241
T
Sbjct: 237 T 237
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 339 bits (871), Expect = e-119
Identities = 125/247 (50%), Positives = 164/247 (66%), Gaps = 10/247 (4%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR AGK++A+ L +A +KPGVTT E++EI ++ + PA L Y FP
Sbjct: 14 MREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIRE-KGAYPAFLGY------KGFPF 66
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGE-PSLVAKRLS 118
C SVN+VV HGIPG+ K+LK+GDI+ ID+ +GY GDT+ F VGE AKRL
Sbjct: 67 PTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLL 126
Query: 119 DISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNY 178
+ + E ++ GI +KPG LGDIG AIQ++AE G+SVVR GHGIG+ HEEP + NY
Sbjct: 127 EATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEEPSIPNY 186
Query: 179 GIPGTLEKLKTGMIFTVEPMINEGRKEIKEMS-DGWTIKTKDRSLSAQWEHTVLVTKNGF 237
G GT +LK GM+F +EPMIN G E+ E D WT+ TKD SLSAQ+EHTV+VT++G
Sbjct: 187 GKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVTEDGC 246
Query: 238 EVLTISP 244
E+LT+ P
Sbjct: 247 EILTLRP 253
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 313 bits (803), Expect = e-108
Identities = 125/241 (51%), Positives = 175/241 (72%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+R AG+L+AEVL+ + +KPGV+T+E++ I +++ PA L Y G FP
Sbjct: 12 IRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHG-AKPAFLGY---YG---FPG 64
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S+C SVN+VV HGIP K+LK GDI+NID+ VI +GY+GDT++ F VG+ S A++L +
Sbjct: 65 SVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLEC 124
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ E ++ I + KPG +G+IG AIQK+AE G+SVVRE+CGHGIG+ FHEEP++ NYG
Sbjct: 125 TEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIPNYGK 184
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
T +LK GM+FT+EPM+N G +EI +DGWT+KTKD SLSAQ+EHT+++T NG E+L
Sbjct: 185 KFTNVRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDNGPEIL 244
Query: 241 T 241
T
Sbjct: 245 T 245
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 303 bits (778), Expect = e-104
Identities = 106/242 (43%), Positives = 153/242 (63%), Gaps = 8/242 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR G++ A L + ++PG+TT+E++ I + IP+P Y FP
Sbjct: 19 MRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEE-HGAIPSPEGY------YGFPG 71
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S C SVN+ V HGIPG +++K GD++NID++ +GY+GDT F VG S A++L +
Sbjct: 72 STCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRV 131
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMN-YG 179
+ E +W GI ++K G L DIG AI+ A+K GYSVVR+ GHG+G++ HEEP V+ Y
Sbjct: 132 AEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHEEPSVILTYT 191
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
P L+ GM VEP +N G K+ + + DGWT+ T D+SLSAQ+EHTV+VT++G E+
Sbjct: 192 DPLPNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRDGPEI 251
Query: 240 LT 241
LT
Sbjct: 252 LT 253
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 250 bits (639), Expect = 4e-83
Identities = 118/247 (47%), Positives = 163/247 (65%), Gaps = 15/247 (6%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+R A +++A +LD + K GVTT E++E+ + N IPAPLNY G PFPK
Sbjct: 52 IRKACQVTARILDALCEAAKEGVTTNELDELSRE-LHKEYNAIPAPLNY----GSPPFPK 106
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
+ICTS+N+V+CHGIP + LK GDI+NID++ I +GYYGD SRM +GE S + K++
Sbjct: 107 TICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQA 166
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNY-- 178
S EC+ I +KPGI L +IG I+ A+KYG+SVV +F GHG+G FHE P V ++
Sbjct: 167 SLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHENPYVPHHRN 226
Query: 179 --GIPGTLEKLKTGMIFTVEPMINEGRKE-IKEMSDGWTIKTKDRSLSAQWEHTVLVTKN 235
IP L GMIFT+EPMIN G+KE + + + W +T D SAQWEHT+L+T+
Sbjct: 227 SSKIP-----LAPGMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEHTILITET 281
Query: 236 GFEVLTI 242
G+E+LT+
Sbjct: 282 GYEILTL 288
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 237 bits (607), Expect = 5e-77
Identities = 108/250 (43%), Positives = 152/250 (60%), Gaps = 11/250 (4%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR +++ EVLD A IKPGVTT+EI+ + H + P+PLNY FPK
Sbjct: 146 MRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIA-AGGYPSPLNY------HFFPK 198
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S CTSVN+V+CHGIP + L+ GDI+N+D+TV G +GD + F+VG +++L
Sbjct: 199 SCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKC 258
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
++EC+ I +KPG+ ++G I +HA G SVV+ +CGHGIG+ FH P + +Y
Sbjct: 259 TYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYAR 318
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
+ +K G +FT+EPMIN G + DGWT T D SAQ+EHT+LVT+ G EVL
Sbjct: 319 NKAVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVL 378
Query: 241 TI----SPNM 246
T SP++
Sbjct: 379 TARLPSSPDV 388
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 199 bits (507), Expect = 3e-64
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 30/235 (12%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR A +++A L+ I+PGVT E+ + G FP
Sbjct: 3 MRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGG-----------ARGPAFPP 51
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
+ + N V H IP +++LK GD++ ID+ +GY+ D +R F VG+P+ + L +
Sbjct: 52 IVASGPNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEA 111
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYS-VVREFCGHGIGKNFHEEPRVMNYG 179
E I +KPG+ GD+ A ++ E+ GY GHGIG + H+E ++
Sbjct: 112 VLEAQEAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGLGHGIGLDVHDEGPYISR- 170
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTK 234
G L+ GM+FT+EP I GW + E TVLVT+
Sbjct: 171 -GGNDRVLEPGMVFTIEPGI--------YFIPGWG--------GVRIEDTVLVTE 208
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 186 bits (473), Expect = 1e-58
Identities = 98/241 (40%), Positives = 143/241 (59%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
M +GKL A IA +KPG+TT+EIN Y+ T QKG +P
Sbjct: 13 MHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGAT-------SEQKGYNGYPY 65
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
+IC SVND +CH P + L +GDI+ ID+ V NG D++ + VG+ S A++L +
Sbjct: 66 AICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLV 125
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ ++ GI + G +GDIGYAI+ + G+SV R+F GHGIGK HEEP + ++G
Sbjct: 126 AENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAIFHFGK 185
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
G +L+ GM+ T+EP++N G + K +GWT +T D LSAQ+EHT+ +TK+G +L
Sbjct: 186 QGQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKDGPIIL 245
Query: 241 T 241
T
Sbjct: 246 T 246
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 174 bits (443), Expect = 1e-53
Identities = 98/269 (36%), Positives = 134/269 (49%), Gaps = 31/269 (11%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
M AG A + + IKPGV E+ E +N +P L + +P
Sbjct: 13 MDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRR-RCKEENVLP--LQIGVDGAMMDYPY 69
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITV------------------------IKNG 96
+ C +ND V H P + ILK+GD+L +D+ +
Sbjct: 70 ATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTES 129
Query: 97 YYG---DTSRMFYVGEPSLVAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYG 153
Y G D+ + VG PS K L D++ E M+ GI + G +GDIG AIQ++AE G
Sbjct: 130 YRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRG 189
Query: 154 YSVVREFCGHGIGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEI-KEMSDG 212
Y VVR+ GHG+G HEEP V NYG G +L+ GM+ T+EPMIN G EI +M G
Sbjct: 190 YGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTWEIDTDMKTG 249
Query: 213 WTIKTKDRSLSAQWEHTVLVTKNGFEVLT 241
W KT D LS Q+EH ++TK+G +LT
Sbjct: 250 WAHKTLDGGLSCQYEHQFVITKDGPVILT 278
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 141 bits (356), Expect = 2e-41
Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 39/239 (16%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+R A +++ + A I+PGVT E+ A + + G
Sbjct: 4 LRKAAEIAEAAMAAAAEAIRPGVTEAEV---------------AAAIEQALRAAGGYPAG 48
Query: 61 SICTSVNDV--VCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLS 118
+ H P ++ L++GD++ +D+ + +GY+ D +R F +GEPS + L
Sbjct: 49 PTIVGSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELY 108
Query: 119 DISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVR-EFCGHGIGKNFHEEPRVMN 177
+ E + ++PG+ ++ A ++ E++G GHGIG HE P +
Sbjct: 109 EAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEPPVLK- 167
Query: 178 YGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNG 236
G L+ GM+F VEP + G I E TVLVT++G
Sbjct: 168 ---AGDDTVLEPGMVFAVEPGLYL------PGGGGVRI-----------EDTVLVTEDG 206
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 127 bits (320), Expect = 2e-34
Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 41/252 (16%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGI---P 57
+R A +++ L+ I+PG+T EI + KGG
Sbjct: 163 IRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALR---------------KGGAEGPS 207
Query: 58 FPKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRL 117
F + + N + H P ++ L+ GD++ ID+ + NGY D +R F +G+PS + +
Sbjct: 208 FDTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREI 267
Query: 118 SDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVRE-FCGHGIGK--NFHEEPR 174
+ E I I+PG+ G++ A ++ EK GY + GHG+G + HE P+
Sbjct: 268 YEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQ 327
Query: 175 VMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTK 234
++ G TLE GM+F++EP I + G ++ +D TVLVT+
Sbjct: 328 YLSPGSDTTLE---PGMVFSIEPGI--------YIPGGGGVRIED---------TVLVTE 367
Query: 235 NGFEVLTISPNM 246
+GFEVLT P
Sbjct: 368 DGFEVLTRVPKE 379
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 117 bits (295), Expect = 3e-32
Identities = 68/247 (27%), Positives = 110/247 (44%), Gaps = 52/247 (21%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKG--GIPF 58
+R A +++ + + + FIKPG+T E+ +M + G G F
Sbjct: 4 LRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMR--------------KLGAEGPSF 49
Query: 59 PKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLS 118
+ + N + HG+P ++ +++GD++ ID I +GY D +R VGEPS K +
Sbjct: 50 DTIVASGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIY 109
Query: 119 DISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFC---GHGIGKNFHEEPRV 175
+I E I +KPG+ ++ A + E+ GY F GHG+G HE P +
Sbjct: 110 EIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYG--EYFIHRTGHGVGLEVHEAPYI 167
Query: 176 MNYGIPGTLEKLKTGMIFTVEPMI---NEG--RKEIKEMSDGWTIKTKDRSLSAQWEHTV 230
PG+ + L+ GM+FT+EP I +G R E V
Sbjct: 168 S----PGSDDVLEEGMVFTIEPGIYIPGKGGVR----------------------IEDDV 201
Query: 231 LVTKNGF 237
LVT++G
Sbjct: 202 LVTEDGC 208
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 92.9 bits (232), Expect = 2e-22
Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 25/214 (11%)
Query: 4 AGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIP-FPKSI 62
AGK++++V + A IKPG ++ E ++N I G P FP +I
Sbjct: 8 AGKIASKVREEAAKLIKPGAKLLDVAEF-------VENRIRE-------LGAKPAFPCNI 53
Query: 63 CTSVNDVVCHGIPG---NKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+N+V H P ++ +GD++ +D+ +GY DT+ +G + L +
Sbjct: 54 --SINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGG---KYEDLVE 108
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKN-FHEEPRVMNY 178
S E + I ++PG+ +G+IG I++ YG+ +R GHG+ + H P + NY
Sbjct: 109 ASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYELHAGPSIPNY 168
Query: 179 GIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDG 212
G KL+ G ++ +EP +G ++ E +
Sbjct: 169 D-EGGGVKLEEGDVYAIEPFATDGEGKVVEGPEV 201
Score = 38.6 bits (91), Expect = 0.002
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 218 KDRSLSAQWEHTVLVTKNGFEVLT 241
L +Q EHTV+VT++G EV T
Sbjct: 267 VKGGLVSQAEHTVIVTEDGCEVTT 290
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 89.6 bits (223), Expect = 3e-21
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 23/213 (10%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
R AG++ +V Y IKPG+T EI E ++N I G FP
Sbjct: 4 YREAGEIHRQVRKYAQSLIKPGMTLLEIAE-------FVENRIRE------LGAGPAFPV 50
Query: 61 SICTSVNDVVCHGIPG---NKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRL 117
++ S+N+ H P + +LK+GD++ +D +GY D++ L
Sbjct: 51 NL--SINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDL 105
Query: 118 SDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGK-NFHEEPRVM 176
+ + E + I + P + LG+IG AI++ E YG+ +R GH I + H +
Sbjct: 106 LEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIP 165
Query: 177 NYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEM 209
N +L+ G ++ +EP G+ + +
Sbjct: 166 NVKGGEG-TRLEEGDVYAIEPFATTGKGYVHDG 197
Score = 35.7 bits (83), Expect = 0.014
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 216 KTKDRSLSAQWEHTVLVTKNGFEVLT 241
K AQ+EHT++V ++G EV T
Sbjct: 265 KEISGGYVAQFEHTIIVREDGKEVTT 290
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 84.1 bits (208), Expect = 4e-19
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 25/214 (11%)
Query: 4 AGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIP-FPKSI 62
AGK+ ++V A I PGV E+ E ++N I + G P FP +I
Sbjct: 11 AGKIHSKVRREAADRIVPGVKLLEVAEF-------VENRIR-------ELGAEPAFPCNI 56
Query: 63 CTSVNDVVCHGIPG---NKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+N+ H P + K GD++ +D+ +GY DT+ +G+ L
Sbjct: 57 --SINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVK 111
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGK-NFHEEPRVMNY 178
+ + ++ I +I+ G+ +G+IG AIQ+ E YG + GH + H + N
Sbjct: 112 AAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIPNV 171
Query: 179 GIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDG 212
KL+ G + +EP +G + + +
Sbjct: 172 K-ERDTTKLEEGDVVAIEPFATDGVGYVTDGGEV 204
Score = 34.0 bits (78), Expect = 0.055
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 215 IKTKDRSLSAQWEHTVLVTKNGFEVLT 241
+ AQWEHT+LV ++G EV T
Sbjct: 268 LNEISGGYVAQWEHTILVEEHGKEVTT 294
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 63.9 bits (156), Expect = 3e-12
Identities = 66/255 (25%), Positives = 106/255 (41%), Gaps = 47/255 (18%)
Query: 2 RIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKG---GIPF 58
+ AG+++ +VL + PG ++ E ++ + Y +K GI F
Sbjct: 5 KTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKV-----YKKEKKLEKGIAF 59
Query: 59 PKSICTSVNDVVCHGIPG----NKILKKGDILNIDITVIKNGYYGDTSRMFYVGEP--SL 112
P I SVN+ VCH P LK GD++ ID+ +GY + VG +
Sbjct: 60 PTCI--SVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETP 117
Query: 113 VAKRLSDI---SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNF 169
V + +D+ + + + ++PG DI AIQK YG + V G
Sbjct: 118 VTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVE-------GVLS 170
Query: 170 HEEPRVMNYGIPGTL---EKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQW 226
H+ RV++ G G E +K G++F + K+ + AQ+
Sbjct: 171 HQLKRVVSSG-EGKAKLVECVKHGLLFPYPVLY-----------------EKEGEVVAQF 212
Query: 227 EHTVLVTKNGFEVLT 241
+ TVL+T NG VLT
Sbjct: 213 KLTVLLTPNGVTVLT 227
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 63.0 bits (153), Expect = 1e-11
Identities = 62/258 (24%), Positives = 97/258 (37%), Gaps = 55/258 (21%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGG--IPF 58
+R+A ++ ++I FI+ G++ EI +M Q+G F
Sbjct: 136 IRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFM--------------RQQGAEKASF 181
Query: 59 PKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKR- 116
+ + + HG +KI+ G+ + +D + GY D +R V GE
Sbjct: 182 DTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHP 241
Query: 117 ---LSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREF----CGHGIGKNF 169
+ I + I I+PG+ + A ++ + GY ++ GH IG
Sbjct: 242 LFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYG---DYFGHNTGHAIGIEV 298
Query: 170 HEEPRVMNYGIPGTLEKLKTGMIFTVEPMI---NEGRKEIKEMSDGWTIKTKDRSLSAQW 226
HE+PR P L+ GM+ TVEP I +G I
Sbjct: 299 HEDPRFS----PRDTTTLQPGMLLTVEPGIYLPGQGGVRI-------------------- 334
Query: 227 EHTVLVTKNGFEVLTISP 244
E VLVT G EVL P
Sbjct: 335 EDVVLVTPQGAEVLYAMP 352
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 46.0 bits (109), Expect = 5e-06
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 72 HGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISFECMWIGIVK 131
H N+ +++GDIL+++ + GYY R ++ E S ++ + + G+
Sbjct: 69 HNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLEL 128
Query: 132 IKPGIHLGDIGYAIQKHAEKYGYSVVREF-CGHGIGKNFHEEPRVMNYGIPGTLE----- 185
IKPG DI + + ++ R F GH G H YG LE
Sbjct: 129 IKPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGVLSHY------YGREAGLELREDI 182
Query: 186 --KLKTGMIFTVEPMI 199
L+ GM+ ++EPMI
Sbjct: 183 DTVLEPGMVVSMEPMI 198
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 44.9 bits (107), Expect = 1e-05
Identities = 63/282 (22%), Positives = 96/282 (34%), Gaps = 84/282 (29%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEIN-EICHNYMVNIQNTIPAPLNYCPQKGGIPFP 59
MR A +SAE +PG++ E+ E + +G
Sbjct: 4 MRKACDISAEAHRAAMKASRPGMSEYELEAEFEY---------------EFRSRGARLAY 48
Query: 60 KSIC-TSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRL 117
I N + H + ++ LK GD++ ID GY D +R F V G+ + + L
Sbjct: 49 SYIVAAGSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQREL 108
Query: 118 SDI----SFECMWIGIVKIKPG-----IHL-----------------GDIGYAIQKHAEK 151
+ I KPG IHL GD+ ++ A
Sbjct: 109 YEAVLAAQKAA----IAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGA-- 162
Query: 152 YGYSVVREFCGHGIGKNFH----------EEPRVMNYGIPGTLEKLKTGMIFTVEP--MI 199
+F HG+G H R + P L+ GM+ T+EP
Sbjct: 163 -----YAKFFPHGLG---HYLGLDVHDVGGYLRYLRRARP-----LEPGMVITIEPGIYF 209
Query: 200 NEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVLT 241
++ E G I+ +D VLVT++G E LT
Sbjct: 210 IPDLLDVPEYFRGGGIRIED---------DVLVTEDGPENLT 242
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 44.9 bits (106), Expect = 2e-05
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 20/217 (9%)
Query: 53 KGGIPFPKSICTSVNDVVCHGIP----GNKILKKGDILNIDITVIKNGYYGDTSRMFYVG 108
+ GI FP C SVN+ V H P + ILK+GD++ ID+ +G+ + F VG
Sbjct: 72 EKGIAFPT--CISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVG 129
Query: 109 EPS--LVAKRLSDI---SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGH 163
V R +D+ + + +KPG + AI K A YG + V H
Sbjct: 130 VAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSH 189
Query: 164 GIGKNFHE-EPRVMNYGIPGTLEKLKT-----GMIFTVEPMINEGRKEIKEMSDGWTIKT 217
+ ++ + E +++ + T ++ V+ +++ G + K+ TI
Sbjct: 190 QLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVSTGEGKAKDADQRTTIYK 249
Query: 218 KDRSLSAQWEHTVLVTKNGF-EVLTISPNMPYPSKCI 253
+D S + + ++ F E+ MP+ +
Sbjct: 250 RD--PSKTYGLKMKASRAFFSEIERRFDAMPFTLRNF 284
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 43.5 bits (102), Expect = 5e-05
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 74 IPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISFECMWIG----I 129
IP N GD++ D V +GY D +R F VGEP + +++ ++ + G +
Sbjct: 247 IPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKI----YQTIRTGHEHML 302
Query: 130 VKIKPGIHLGDIGYAIQKHAEKYGY-SVVREFCGHGIGK--NFHEEPRVMNYGIPGTLEK 186
+ PG+ + D+ + + +K G + R GHG G E P V + E
Sbjct: 303 SMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHAT----ES 358
Query: 187 LKTGMIFTVE 196
+GM+ ++E
Sbjct: 359 FTSGMVLSLE 368
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 43.2 bits (101), Expect = 6e-05
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 74 IPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISFECMWIG----I 129
IP N GD++ D V +GY D +R F VGEP + +++ ++ + G +
Sbjct: 164 IPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKI----YQTIRTGHEHML 219
Query: 130 VKIKPGIHLGDIGYAIQKHAEKYGY-SVVREFCGHGIGK--NFHEEPRVMNYGIPGTLEK 186
+ PG+ + D+ + + +K G + R GHG G E P V + E
Sbjct: 220 SMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHAT----ES 275
Query: 187 LKTGMIFTVE 196
+GM+ ++E
Sbjct: 276 FTSGMVLSLE 285
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 40.5 bits (95), Expect = 6e-04
Identities = 50/188 (26%), Positives = 72/188 (38%), Gaps = 42/188 (22%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNY-CPQKG---GI 56
+R A ++ +V Y IKPGV +++I I + G G
Sbjct: 161 LRRAAEVHRQVRRYAQSVIKPGVK-----------LIDICERIESKSRELIEADGLKCGW 209
Query: 57 PFPKSICTSVNDVVCHGIP--GNK-ILKKGDILNIDITVIKNGYYGDTSRMFYVG----- 108
FP C S+N H P G+K +L D+ +D NG D + F V
Sbjct: 210 AFPTG-C-SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCA--FTVAFNPKY 265
Query: 109 EPSLVAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKY-------GYSV--VRE 159
+P L A + + GI + + L DIG AIQ+ E Y Y + +R
Sbjct: 266 DPLLQATK------DATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRN 319
Query: 160 FCGHGIGK 167
GH IG
Sbjct: 320 LNGHSIGP 327
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 38.3 bits (89), Expect = 0.003
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 77 NKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDISFECMWIGIVKIKPGI 136
+ +KKG+ +I Y+ SR ++G+P+ E M G+ KPG
Sbjct: 235 DSPMKKGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLAAAKPGN 294
Query: 137 HLGDIGYAIQKHAEKYGYSVVREF-CGHGIGKNFHEE--PRVMNYGIPGTLEKLKTGMIF 193
DI A K +KYG + ++ G+ IG ++ + R M+ PG L+ GM F
Sbjct: 295 TCEDIANAFFKVLKKYG--IHKDSRTGYPIGLSYPPDWGERTMSLR-PGDNTVLQPGMTF 351
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 38.1 bits (88), Expect = 0.003
Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 32/175 (18%)
Query: 74 IPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD---ISFECMWIGIV 130
I K GD++ D + GY D +R F +GEP + +++ D E M +
Sbjct: 246 IADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHM---LS 302
Query: 131 KIKPGIHLGDIGYAIQKHAEKYGYS-VVREFCGHGIGK--NFHEEPRVMNYGIPGTLEKL 187
+ PG+ L + + + G R GHG G E P V E
Sbjct: 303 MVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLGHGDGVFLGLEEVPFVSTQAT----ETF 358
Query: 188 KTGMIFTVE-PMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVLT 241
GM+ ++E P G I E +L+T +GFE L+
Sbjct: 359 CPGMVLSLETPYYGIGVGSI------------------MLEDMILITDSGFEFLS 395
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 37.8 bits (88), Expect = 0.004
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 50/193 (25%)
Query: 80 LKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSDISFEC-------------- 124
++ GD++ ID GY GD +R F V G+ + + + DI E
Sbjct: 249 MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSI 308
Query: 125 ----------MWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHG----IGKNFH 170
M G+VK+ GI GD+ I ++A R F HG +G + H
Sbjct: 309 REVTGEVVRIMVSGLVKL--GILKGDVDQLIAENAH-------RPFFMHGLSHWLGLDVH 359
Query: 171 EEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTV 230
+ V YG L+ GM+ TVEP + I +D + + R + + E +
Sbjct: 360 D---VGVYG-QDRSRILEPGMVLTVEPGL-----YIAPDAD---VPEQYRGIGIRIEDDI 407
Query: 231 LVTKNGFEVLTIS 243
++T+ G E LT S
Sbjct: 408 VITETGNENLTAS 420
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 32.1 bits (74), Expect = 0.18
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 162 GHGIGK--NFHEEPRVMNYGIPGTLEKLKTGMIFTVEP 197
GHG+G N HE P + LK GMI + EP
Sbjct: 161 GHGVGSFLNVHEGP--QSISPAPNNVPLKAGMILSNEP 196
>gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional.
Length = 475
Score = 29.9 bits (68), Expect = 1.2
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 73 GIPGNKILKKGDILNIDITVIKNGYYGDTSRM----FYVGEPSLVAKRLSDISFECMWIG 128
G+ G+++ K D+ +I T+ KN GD+S + +G P++ ++ L + FE
Sbjct: 355 GLTGSRVEKVLDLAHI--TLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFE----- 407
Query: 129 IVKIKPGIHLG-DIGYAIQKHAEK 151
K+ +H I IQK K
Sbjct: 408 --KVAEFLHRAVTIALKIQKEHGK 429
>gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase
M, a member of this domain family is present in cell
division control protein 68, a transcription factor.
Length = 243
Score = 28.9 bits (65), Expect = 2.1
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 129 IVK-IKPGIHLGD-----IGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGIPG 182
I+K +KPG L D + Y I+K + + + G GIG F E ++N
Sbjct: 135 ILKELKPGAKLSDVYQKTLDY-IKKKKPELEPNFTKN-LGFGIGLEFRESSLIIN---AK 189
Query: 183 TLEKLKTGMIFTV 195
KLK GM+F +
Sbjct: 190 NDRKLKKGMVFNL 202
>gnl|CDD|239185 cd02784, MopB_CT_PHLH, The MopB_CT_PHLH CD includes a group of
related uncharacterized putative hydrogenase-like
homologs (PHLH) of molybdopterin binding proteins. This
CD is of the PHLH region homologous to the conserved
molybdopterin-binding C-terminal (MopB_CT) region
present in many, but not all, MopB homologs.
Length = 137
Score = 28.2 bits (63), Expect = 2.7
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 130 VKIKPGIHLGDIGYAI---QKHAEKYGYSVVREFCGHGIGKNFH--EEPRVMNYGIPGTL 184
V I+PG G + A+ + HA K G+G+G N + V ++ +
Sbjct: 71 VWIQPGHAEGVVLLALGYGRTHAGK---------VGNGVGHNAYPFRTSDVPDFVAGVEV 121
Query: 185 EKLKT 189
K
Sbjct: 122 TKTGR 126
>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase;
Provisional.
Length = 383
Score = 29.0 bits (66), Expect = 2.7
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 12/33 (36%)
Query: 133 KPGIHLGDIG--------YAIQKHAEKYGYSVV 157
KPG+ + DIG YA AE YG SVV
Sbjct: 166 KPGMRVLDIGCGWGGLARYA----AEHYGVSVV 194
>gnl|CDD|216891 pfam02130, UPF0054, Uncharacterized protein family UPF0054.
Length = 142
Score = 27.6 bits (62), Expect = 3.6
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 120 ISFECMWIGIVKIKPGIHLGDI----GYAIQKHAEKYGYSVVREFC---GHGI 165
+SF LGDI A + A++YG+S RE HG+
Sbjct: 62 LSFPMDEPEEGDEPLLRLLGDIVISPETA-AREAKEYGHSFERELAHLLVHGL 113
>gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain
found in gelsolin, severin, villin, and related
proteins. Gelsolin repeats occur in gelsolin, severin,
villin, advillin, villidin, supervillin, flightless,
quail, fragmin, and other proteins, usually in several
copies. They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating
bundles of F-actin with uniform filament polarity,
which is most likely mediated by their extra villin
headpiece domain. Many family members have also adopted
functions in the nucleus, including the regulation of
transcription. Supervillin, gelsolin, and flightless I
are involved in intracellular signaling via nuclear
hormone receptors. The gelsolin-like domain is
distantly related to the actin depolymerizing domains
found in cofilin and similar proteins.
Length = 92
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 5 GKLS----AEVLDYIAPFIKPGVTTEEINE 30
GK S E+ +A F+KP + +E+ E
Sbjct: 47 GKGSSEDERELAKDVASFLKPKASLQEVAE 76
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 28.2 bits (63), Expect = 5.1
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 168 NFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWE 227
EEP V G+ L+ LK+ I + E R+ +KE + + + E
Sbjct: 464 ILEEEPTV-GGGLAAALKLLKSRGILKKNQLERERREFLKEKERLKLLAEIRERI--ERE 520
>gnl|CDD|180070 PRK05423, PRK05423, hypothetical protein; Provisional.
Length = 104
Score = 26.5 bits (59), Expect = 7.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 10 EVLDYIAPFIKPGVTTEEINEICHN 34
+LD ++ +IKPG++ EEI I N
Sbjct: 43 LLLDNLSDYIKPGMSIEEIQGIIAN 67
>gnl|CDD|222681 pfam14324, PINIT, PINIT domain. The PINIT domain is a protein
domain that is found in PIAS proteins. The PINIT domain
is about 180 amino acids in length.
Length = 144
Score = 26.4 bits (59), Expect = 9.0
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 24 TTEEINEIC---HNYMVNIQNTIPAPLN-YCPQKGGIPFPKSICTSVNDVVCHGIPGNKI 79
T E+++++ V + L+ C Q I FP I VN +
Sbjct: 43 TPEQVSQLKNSRPTVQVYLFCGAFCLLDTSCEQD--IEFPPQIEVKVNGKQVKA--NLRG 98
Query: 80 LKK--GDILNIDIT 91
LK G +DIT
Sbjct: 99 LKNKPGTARPVDIT 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.432
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,210,845
Number of extensions: 1252478
Number of successful extensions: 1154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 51
Length of query: 256
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 161
Effective length of database: 6,723,972
Effective search space: 1082559492
Effective search space used: 1082559492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)