RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3761
(256 letters)
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 463 bits (1193), Expect = e-168
Identities = 138/250 (55%), Positives = 193/250 (77%), Gaps = 7/250 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 66
Query: 61 SICTSVNDVVCHGIPG-NKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 67 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 126
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 127 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYD 186
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 187 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 246
Query: 240 LTISPNMPYP 249
LT+ + P
Sbjct: 247 LTLRKDDTIP 256
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 456 bits (1175), Expect = e-165
Identities = 143/251 (56%), Positives = 187/251 (74%), Gaps = 9/251 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR AGKL+AE LD+I +KP VTT +N++CHN++ + N IPAPLNY FPK
Sbjct: 17 MRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITS-HNAIPAPLNYKG------FPK 69
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
SICTS+N VVCHGIP +K LK GDI+NID+TVI +G+YGDTSRM+YVG+ ++ KRL +
Sbjct: 70 SICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQV 129
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+++ M GI ++PG LGDIGYAIQ +AEK+ YSVVR++ GHGIG+ FH++P ++NYG
Sbjct: 130 TYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILNYGR 189
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKE-MSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
GT LK GM FTVEPMIN G + DGWT+ T+D+SLSAQ+EHT+ VTK+GFE+
Sbjct: 190 NGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEI 249
Query: 240 LTISP-NMPYP 249
T+SP + YP
Sbjct: 250 FTLSPKKLDYP 260
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 442 bits (1139), Expect = e-158
Identities = 117/249 (46%), Positives = 161/249 (64%), Gaps = 7/249 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+ +L+ EVLD A IKPGVTTEEI+ H + +N P+PLNY FPK
Sbjct: 84 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIA-RNCYPSPLNYYN------FPK 136
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S CTSVN+V+CHGIP + L++GDI+N+DIT+ +NGY+GD + F+VGE A++L
Sbjct: 137 SCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQT 196
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
++EC+ I +KPG+ ++G IQKHA+ G+SVVR +CGHGI K FH P V +Y
Sbjct: 197 TYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 256
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
+ +K+G +FT+EPMI EG + + DGWT T+D SAQ+EHT+LVT G E+L
Sbjct: 257 NKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEIL 316
Query: 241 TISPNMPYP 249
T + P
Sbjct: 317 TRRLDSARP 325
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 438 bits (1130), Expect = e-158
Identities = 104/241 (43%), Positives = 148/241 (61%), Gaps = 7/241 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+++A L + PGVTT+E++ I H Y+V+ P+ L Y FPK
Sbjct: 50 MRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVD-NGAYPSTLGYKG------FPK 102
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
S CTS+N+V+CHGIP + ++ GDI+NID+T G +GDT+ F G+ + + L D
Sbjct: 103 SCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDR 162
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ E I +KPG L IG I+ +A ++GY+VVR+F GHGIG FH V++Y
Sbjct: 163 TREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQ 222
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
P ++ GM FT+EPMIN G + + DGWT+ TKDR +AQ+EHT+LVT G E+L
Sbjct: 223 PAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEIL 282
Query: 241 T 241
T
Sbjct: 283 T 283
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 436 bits (1124), Expect = e-157
Identities = 85/247 (34%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
++ G + A+V + + KPG+TT+E++ I I AP++ + FP
Sbjct: 12 LKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEE-YGAISAPIHD---EN---FPG 64
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSL-VAKRLSD 119
C SVN+ V HGIP +++++GD++NID++ +KNGYY DT F VGE + +++ D
Sbjct: 65 QTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCD 124
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPR-VMNY 178
++ I K+KPG L +IG A+ A + V++ GHG+G + HE P V+NY
Sbjct: 125 VATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNY 184
Query: 179 GIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFE 238
P L GM+ +EP I+ + E + W +T D+S AQ EHTV+VTK+G
Sbjct: 185 FDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPI 244
Query: 239 VLTISPN 245
+ T
Sbjct: 245 LTTKIEE 251
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 435 bits (1121), Expect = e-155
Identities = 103/252 (40%), Positives = 143/252 (56%), Gaps = 10/252 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+R A L + LDY + PGVTT+EI+ H +++ N P+ LNY FPK
Sbjct: 112 IREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIK-NNAYPSTLNYYK------FPK 164
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLV---AKRL 117
S CTSVN++VCHGIP + LK GDI+NIDI+V G + D + ++VG+ + V K L
Sbjct: 165 SCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKEL 224
Query: 118 SDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMN 177
+ + + I K KPG+ +IG I + K +SVVR + GHG+GK FH P V +
Sbjct: 225 VETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPH 284
Query: 178 YGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGF 237
+ + +K G +FT+EPMIN+G D WT T D LSAQ+EHT+L+T NG
Sbjct: 285 FKKNKAVGIMKPGHVFTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNGV 344
Query: 238 EVLTISPNMPYP 249
E+LT P
Sbjct: 345 EILTKRTQDSPP 356
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 430 bits (1108), Expect = e-155
Identities = 90/244 (36%), Positives = 143/244 (58%), Gaps = 7/244 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
M +G+L A+V ++ FIKPG+T+ +I +++ + + A + Y +
Sbjct: 13 MDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIES-HGGVAAQIGYEG------YKY 65
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
+ C S+ND +CHG P K+LK GD++ +D+ V G D+ + VGE + RL ++
Sbjct: 66 ATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEV 125
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGI 180
+ + +++GI + + G +GDIG+AIQ + E GY VVR+F GHGIG HE P + +YG
Sbjct: 126 TKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHYGE 185
Query: 181 PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEVL 240
G +LK GM+ T+EPM+N G +K +GWT T+D LS Q+EH++ +TK G +L
Sbjct: 186 AGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRIL 245
Query: 241 TISP 244
T
Sbjct: 246 TSQG 249
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 418 bits (1077), Expect = e-150
Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 8/242 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
M+ AGK A L + I PG T ++ + PA Y +
Sbjct: 25 MKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKK-LRVKPAFKGYGG------YKY 77
Query: 61 SICTSVNDVVCHGIPG-NKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
+ C SVN+ V HG+P K+ K+GDI+++D+ + G YGD + + VGE K L
Sbjct: 78 ATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVR 137
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
++ E + I IKPGI LGD+ + IQ+ E G++V+R++ GHG+G+ HE+P++ NYG
Sbjct: 138 VTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYG 197
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
PGT L+ GM +EPM++EG + DGWT T D S A +EHT+L+T+NG E+
Sbjct: 198 TPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEI 257
Query: 240 LT 241
LT
Sbjct: 258 LT 259
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 397 bits (1023), Expect = e-141
Identities = 85/251 (33%), Positives = 132/251 (52%), Gaps = 14/251 (5%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
M AG + L + K GV+T E++++ + + +P+ L Y FP
Sbjct: 43 MAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIRE-AGAVPSFLGYHG------FPA 95
Query: 61 SICTSVNDVVCHGIPGNK-ILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
SIC+SVND V HGIP +L GD+++ID I +G++GD++ F VG + LS+
Sbjct: 96 SICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSE 155
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAE------KYGYSVVREFCGHGIGKNFHEEP 173
+ M GI + PG L D+ +AI+ + +V + GHGIG++ H +P
Sbjct: 156 ATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSMHLDP 215
Query: 174 RVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVT 233
+ N G PG L G + +EPM+ G + + ++D WT+ T D S +A WEHTV VT
Sbjct: 216 FLPNEGAPGKGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVT 275
Query: 234 KNGFEVLTISP 244
+ G +LT+ P
Sbjct: 276 EAGPRILTMRP 286
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 242 bits (620), Expect = 5e-79
Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 19/243 (7%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
++ G ++ VL + GV+ + E ++ I K GI FP
Sbjct: 28 YKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEK--EMKKGIAFPT 85
Query: 61 SICTSVNDVVCHGIP----GNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEP-----S 111
SVN+ VCH P + ILK+GD++ ID+ V +G+ + + F V +
Sbjct: 86 --SISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVT 143
Query: 112 LVAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHE 171
+ + C + +KPG + A K A + + + H + ++ +
Sbjct: 144 GRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVID 203
Query: 172 EPRVM------NYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQ 225
+ + + + ++ V+ +++ G + K+ TI +D S
Sbjct: 204 GEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQYG 263
Query: 226 WEH 228
+
Sbjct: 264 LKM 266
Score = 39.7 bits (93), Expect = 5e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 218 KDRSLSAQWEHTVLVTKNGFEVLTISP 244
K+ AQ++ TVL+ NG +T P
Sbjct: 318 KEGEFVAQFKFTVLLMPNGPMRITSGP 344
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 234 bits (598), Expect = 6e-77
Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 23/236 (9%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+ AG+++ +V + +PG+ E+ E ++ G FP
Sbjct: 6 LMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIME-------------LGGKPAFP- 51
Query: 61 SICTSVNDVVCHGIP---GNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRL 117
+ S+N++ H P +LK+GD L ID+ V +G+ DT+ VG L
Sbjct: 52 -VNLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGM---EEDEL 107
Query: 118 SDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKN-FHEEPRVM 176
+ + E + I + G+ + ++G AI+ K G+ + GH I + H +
Sbjct: 108 MEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIP 167
Query: 177 NYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIK-TKDRSLSAQWEHTVL 231
N P LK G +F +EP G ++ E+ +D + +L
Sbjct: 168 NIYRPHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDVPVRVAQARFLL 223
Score = 40.3 bits (95), Expect = 3e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 216 KTKDRSLSAQWEHTVLVTKNGFEVLT 241
K + AQ+EHT++V K+ V T
Sbjct: 269 KEIRNGIVAQFEHTIIVEKDSVIVTT 294
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 180 bits (459), Expect = 3e-54
Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 25/234 (10%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
R A + +V Y+ +IKPG+T EI E +++ + G+ FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEK-------LEDCSRKLIKENGLNAGLAFP- 220
Query: 61 SICTSVNDVVCHGIPG---NKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRL 117
S+N+ H P +L+ DI ID +G D + L
Sbjct: 221 -TGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNP---KYDTL 276
Query: 118 SDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEK---------YGYSVVREFCGHGIGKN 168
+ GI + L D+G AIQ+ E Y +R GH IG+
Sbjct: 277 LKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQY 336
Query: 169 FHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSD-GWTIKTKDRS 221
+ + G +++ G ++ +E + G+ + + + +K D
Sbjct: 337 RIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVG 390
Score = 38.4 bits (89), Expect = 0.002
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 215 IKTKDRSLSAQWEHTVLVTKNGFEVLT 241
+ S +AQ+EHT+L+ EV++
Sbjct: 447 LCDIKGSYTAQFEHTILLRPTCKEVVS 473
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 171 bits (436), Expect = 5e-52
Identities = 44/225 (19%), Positives = 77/225 (34%), Gaps = 28/225 (12%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
R A + + ++PG+T EI I+++ L + GI FP
Sbjct: 50 ARRAAEAHRRARYRVQSIVRPGITLLEIVRS-------IEDST-RTLLKGERNNGIGFP- 100
Query: 61 SICTSVNDVVCHGIP----GNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKR 116
S+N H + +LK+ D+L ID +G D++ E +
Sbjct: 101 -AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFKE---NLEP 156
Query: 117 LSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSV---------VREFCGHGIGK 167
L + E GI + + + DIG I + Y + + + GH I +
Sbjct: 157 LLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIRPISDLHGHSISQ 216
Query: 168 N-FHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSD 211
H + T ++K + VE G+ I +
Sbjct: 217 FRIHGGISIPAVNNRDT-TRIKGDSFYAVETFATTGKGSIDDRPP 260
Score = 38.6 bits (90), Expect = 0.001
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 218 KDRSLSAQWEHTVLVTKNGFEVLT 241
D AQ+EHTV ++++G EVLT
Sbjct: 332 IDGCKVAQFEHTVYLSEHGKEVLT 355
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 139 bits (352), Expect = 4e-39
Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 35/253 (13%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEI-NEICHNYMVNIQNTIPAPLNYCPQKGGIPFP 59
+R +++ + + V E+ + I +T +
Sbjct: 166 IRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFED-------VELMDTW 218
Query: 60 KSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
+ +N H + + KGDIL+++ + GYY R ++ S RL
Sbjct: 219 TWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQ 278
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREF---CGHGIGKNFHEEPRVM 176
++ E G+ IKPG DI + + K+ + GH G H R
Sbjct: 279 VNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVL--QYRTFGYGHSFGTLSHYYGREA 336
Query: 177 NYGI-PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQW----EHTVL 231
+ L+ GM+ ++EPMI L ++
Sbjct: 337 GLELREDIDTVLEPGMVVSMEPMI-----------------MLPEGLPGAGGYREHDILI 379
Query: 232 VTKNGFEVLTISP 244
V +NG E +T P
Sbjct: 380 VNENGAENITKFP 392
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 135 bits (342), Expect = 1e-37
Identities = 43/254 (16%), Positives = 82/254 (32%), Gaps = 37/254 (14%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEI-NEICHNYMVNIQNTIPAPLNYCPQKGGIPFP 59
+R ++S A I GV E+ + I P +
Sbjct: 166 IRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPY--------VELMDT 217
Query: 60 KSICTS-VNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLS 118
S +N H B+++++GDIL+++ + GYY R ++ Z + +
Sbjct: 218 WIWFQSGINTDGAHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASLZIW 277
Query: 119 DISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREF---CGHGIGKNFHEEPRV 175
+ + G+ IKPG DI + ++ R GH G H R
Sbjct: 278 ZKNTAVHRRGLZLIKPGARCKDIASELNBMYRZWDLL--RYRTFGYGHSFGVLBHYYGRE 335
Query: 176 MNYGI-PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQW----EHTV 230
+ L+ GM+ ++EPM+ +
Sbjct: 336 AGVELREDIZTVLEPGMVVSMEPMV-----------------MBPEGEPGAGGYREHDIL 378
Query: 231 LVTKNGFEVLTISP 244
++ +N E +T P
Sbjct: 379 VIKENBTENITGFP 392
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 131 bits (331), Expect = 2e-36
Identities = 63/254 (24%), Positives = 102/254 (40%), Gaps = 52/254 (20%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKG--GIPF 58
++ A +++ ++I FI+PGV+ E++ +M ++G F
Sbjct: 139 LKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMR--------------KQGATSSSF 184
Query: 59 PKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLS 118
+ + + + HG+ K+++ GD + +D GY D +R VGEPS K +
Sbjct: 185 DIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIY 244
Query: 119 DISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFC---GHGIGKNFHEEPRV 175
+I E G+ IK G+ + + + + GY F GHGIG HE P +
Sbjct: 245 NIVLEAQLRGVNGIKAGLTGREADALTRDYITEKGYG--EYFGHSTGHGIGLEIHEAPGL 302
Query: 176 MNYGIPGTLEKLKTGMIFTVEPMI---NEG--RKEIKEMSDGWTIKTKDRSLSAQWEHTV 230
+ L+ GM TVEP I G R E +
Sbjct: 303 A----FRSDTVLEPGMAVTVEPGIYIPGIGGVR----------------------IEDDI 336
Query: 231 LVTKNGFEVLTISP 244
+VT G EV+T SP
Sbjct: 337 IVTSEGNEVITKSP 350
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 129 bits (327), Expect = 7e-36
Identities = 56/254 (22%), Positives = 95/254 (37%), Gaps = 52/254 (20%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKG--GIPF 58
++ A ++S I+ G+T +EI + M ++G G+ F
Sbjct: 142 IKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMR--------------KEGAEGVAF 187
Query: 59 PKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLS 118
+ + + HG +K++++GD++ ID Y D +R+ +GEPS K +
Sbjct: 188 DTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVH 247
Query: 119 DISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFC---GHGIGKNFHEEPRV 175
I E + K G+ + ++ + GY F GHGIG HE P +
Sbjct: 248 SIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYG--EFFGHSLGHGIGLEVHEGPAI 305
Query: 176 MNYGIPGTLEKLKTGMIFTVEPMI---NEG--RKEIKEMSDGWTIKTKDRSLSAQWEHTV 230
L ++FTVEP I + R E V
Sbjct: 306 S----FRNDSPLPENVVFTVEPGIYLEGKFGIR----------------------IEEDV 339
Query: 231 LVTKNGFEVLTISP 244
++ + G E+LT P
Sbjct: 340 VLKEQGCEILTTLP 353
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 129 bits (326), Expect = 1e-35
Identities = 59/254 (23%), Positives = 94/254 (37%), Gaps = 52/254 (20%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKG--GIPF 58
+ A +++ + + I G E+ M G F
Sbjct: 136 IEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMK--------------MNGAEKPAF 181
Query: 59 PKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLS 118
I + + HG+ +K +++GD++ ID+ + Y D +R VG P+ K +
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 119 DISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFC---GHGIGKNFHEEPRV 175
+I E + KPGI ++ + +YGY F GHG+G HE PRV
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYG--EYFNHSLGHGVGLEVHEWPRV 299
Query: 176 MNYGIPGTLEKLKTGMIFTVEPMI---NEG--RKEIKEMSDGWTIKTKDRSLSAQWEHTV 230
L+ GM+ T+EP I G R E T+
Sbjct: 300 S----QYDETVLREGMVITIEPGIYIPKIGGVR----------------------IEDTI 333
Query: 231 LVTKNGFEVLTISP 244
L+TKNG + LT +
Sbjct: 334 LITKNGSKRLTKTE 347
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 127 bits (321), Expect = 6e-35
Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 49/252 (19%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGG--IPF 58
M A +++ +V + I + G+ E+ + ++ I F
Sbjct: 140 MEHASRIADKVFEEILTWDLIGMKERELALKIELLI---------------RELSDGIAF 184
Query: 59 PKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLS 118
+ + N H PG + ++KGDI+ +D GY D +R +GE ++
Sbjct: 185 EPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIY 244
Query: 119 DISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFC---GHGIGKNFHEEPRV 175
++ + ++ GI D+ ++ K GY F GHG+G + HEEP +
Sbjct: 245 EVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYG--EYFIHRTGHGLGLDVHEEPYI 302
Query: 176 MNYGIPGTLEKLKTGMIFTVEPMI---NEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLV 232
P LK GM FT+EP I G G I E ++V
Sbjct: 303 G----PDGEVILKNGMTFTIEPGIYVPGLG---------GVRI-----------EDDIVV 338
Query: 233 TKNGFEVLTISP 244
+ LT +
Sbjct: 339 DEGKGRRLTKAE 350
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 124 bits (314), Expect = 9e-34
Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 56/256 (21%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKG--GIPF 58
+ AG V + F+ PG T ++ +V +G + F
Sbjct: 159 LAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIV--------------AEGHSAVAF 204
Query: 59 PKSICTS-VNDVVCHGIPGNKILKKGDILNIDI-TVIKNGYYGDTSRMFYVGEPSLVAKR 116
I S + H ++ L+ GDI+ +DI + GYY D++R + +G+PS +
Sbjct: 205 V--IVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQ 262
Query: 117 LSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFC---GHGIGKNFHEEP 173
+ ++PG+ + A + G + F GHGIG HEEP
Sbjct: 263 QYSALQRAQRAAVDAVRPGVTAAQVDAAARDVLADAGLA--EYFVHRTGHGIGLCVHEEP 320
Query: 174 RVMNYGIPGTLEKLKTGMIFTVEPMI---NEG--RKEIKEMSDGWTIKTKDRSLSAQWEH 228
++ G L GM F++EP I R E
Sbjct: 321 YIV----AGNELPLVAGMAFSIEPGIYFPGRWGAR----------------------IED 354
Query: 229 TVLVTKNGFEVLTISP 244
V+VT+NG + P
Sbjct: 355 IVVVTENGALSVNNRP 370
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 114 bits (287), Expect = 1e-29
Identities = 38/257 (14%), Positives = 81/257 (31%), Gaps = 24/257 (9%)
Query: 1 MRIAGKLSAEVL-----DYIAPFIKPG--VTTEEINEICHNYMVN---IQNTIPAPLNYC 50
++ A ++S V+ D ++ +I G +T + ++ + + N Q +
Sbjct: 186 IKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDID 245
Query: 51 PQKGGIPFPKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEP 110
+ + I + + + + GD++ + Y + R + P
Sbjct: 246 LDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFD-P 304
Query: 111 SLVAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREF---CGHGIGK 167
++ + G +GDI I + F G GIG
Sbjct: 305 DSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGI 364
Query: 168 NFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWE 227
F E ++N L+ GM + G + + + +
Sbjct: 365 EFRESSLLVN---AKNPRVLQAGMTLNLSI----GFGNLINPHPKNSQSKE---YALLLI 414
Query: 228 HTVLVTKNGFEVLTISP 244
T+ +T++ V T SP
Sbjct: 415 DTIQITRSDPIVFTDSP 431
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 100 bits (251), Expect = 1e-24
Identities = 39/268 (14%), Positives = 87/268 (32%), Gaps = 35/268 (13%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPG------VTTEEINEICHNYMVN----------IQNTIP 44
+ ++ K S + +D ++ + +T ++++ N + + + P
Sbjct: 186 LSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDLSALCP 245
Query: 45 APLNYCPQKGGIPFPKSICTSVN-DVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSR 103
+ + I + D+ N L + + N Y + +R
Sbjct: 246 PNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCGIRYNNYCSNITR 305
Query: 104 MFYVGEPSLVAKRLSDISFECMWIGIVKI-KPGIHLGDIGYAIQKHAEKYGYSVVREF-- 160
F + PS D + I KPG ++ ++ ++ EK +V F
Sbjct: 306 TFLID-PSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPELVPNFTK 364
Query: 161 -CGHGIGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKD 219
G IG F + ++N + K++ G F + N + + ++ + +
Sbjct: 365 NIGSLIGLEFRDSNFILN--VKNDYRKIQRGDCFNISFGFNN--LKDSQSANNYAL---- 416
Query: 220 RSLSAQWEHTVLVTKNGFEVLTISPNMP 247
Q TV + + E N
Sbjct: 417 -----QLADTVQIPLDETEPPRFLTNYT 439
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 100 bits (251), Expect = 1e-24
Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 46/257 (17%)
Query: 1 MRIAGKLS----AEVLDYIAPFIKPGVTTE-EINEICHNYMVNIQNTIPAPLNYCPQKGG 55
MR A ++ D+ + GVT E +I I H+ V
Sbjct: 238 MRCASHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGEWIETRLLASGPRS 297
Query: 56 IPFPKSICTSVNDVVCHGIPGNKILKKGDILNIDITVIK-NGYYGDTSRMFYVGEPSLVA 114
P G ++ ++ +I++ D ++ G D SR +++G+ A
Sbjct: 298 NP-------------WFQECGPRVCQRNEIISFDTDLVGAYGICTDISRSWWIGDQKPRA 344
Query: 115 KRLSDISFECMWI--GIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFC-GHGIGKNFHE 171
+ + I + +KPG+ + ++ + H + + C HG+G E
Sbjct: 345 DMIYAMQHGVEHIRTNMEMLKPGVMIPEL--SANTHVLDAKFQKQKYGCLMHGVGL-CDE 401
Query: 172 EPRVMNYGI---PGTLEKLKTGMIFTVEPMI-NEGRKEIKEMSDGWTIKTKDRSLSAQWE 227
P V L+ GM VE +I EG + E
Sbjct: 402 WPLVAYPDHAVAGAYDYPLEPGMTLCVEALISEEGGDF------SIKL-----------E 444
Query: 228 HTVLVTKNGFEVLTISP 244
VL+T++G+E LT P
Sbjct: 445 DQVLITEDGYENLTKYP 461
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 55.3 bits (134), Expect = 4e-09
Identities = 51/267 (19%), Positives = 94/267 (35%), Gaps = 74/267 (27%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFP- 59
++ A ++ + + + K + + + A ++ + GI
Sbjct: 180 IKEAIAVTKDGIYNVLKHAKADMM---------------EYELEAQFDFTLKSSGIKHHA 224
Query: 60 -KSICTS-VNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKR 116
+I S N V H + ++ GD++ +D+ K+ Y D S F G S K+
Sbjct: 225 FNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQ 284
Query: 117 LSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKY------------GYSVVREFC--- 161
+ +I + IKPG+ + +HA+K + ++
Sbjct: 285 IYNIVLNALKETTEIIKPGLKFAAL----NEHAKKVLAEGCKAVGLIQEDEELSKYYYHG 340
Query: 162 -GHGIGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEP---MINEG---RKEIKEMSDGWT 214
H +G + H+ V Y L+ GM+ T+EP + E R I
Sbjct: 341 VSHFLGLDTHD---VGTY----KDRVLEEGMVITIEPGLYIEEESIGIR--I-------- 383
Query: 215 IKTKDRSLSAQWEHTVLVTKNGFEVLT 241
E +LVTK+G E L+
Sbjct: 384 ------------EDDILVTKDGHENLS 398
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 54.4 bits (131), Expect = 1e-08
Identities = 56/294 (19%), Positives = 99/294 (33%), Gaps = 69/294 (23%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEI-NEICHNYMVNIQNTIPAPLNYCPQKGGIPFP 59
+R K+S+E + +K G+ E+ + H YC +GG+
Sbjct: 196 LRYTNKISSEAHREVMKAVKVGMKEYELESLFEH---------------YCYSRGGMRHS 240
Query: 60 --KSICTS-----VNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPS 111
IC S V G P ++ ++ GD+ D+ + D + F G+ +
Sbjct: 241 SYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFT 300
Query: 112 LVAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEK-------------------Y 152
K + + + +KPG+ D+ + A++
Sbjct: 301 ADQKAVYEAVLRSSRAVMGAMKPGVWWPDM----HRLADRIHLEELAHMGILSGSVDAMV 356
Query: 153 GYSVVREFCGHGIG-------------KNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMI 199
+ F HG+G E T L+ GM+ TVEP I
Sbjct: 357 QAHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGI 416
Query: 200 NEGRKEIKE-MSDGWTIKTKDRSLSAQW--------EHTVLVTKNGFEVLTISP 244
+ E ++D +R + ++ E V+VT +G E+LT P
Sbjct: 417 YFIDHLLDEALADPARASFFNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCVP 470
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 52.2 bits (126), Expect = 5e-08
Identities = 54/271 (19%), Positives = 98/271 (36%), Gaps = 64/271 (23%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFP- 59
+R AG+++A +PG+ + +++ + G +P
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLE---------------GEIHHEFNRHGARYPS 228
Query: 60 -KSICTS-VNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKR 116
+I S N + H ++ GD++ ID GY GD +R F V G+ + +
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 117 LSDISFECMWIGIVKIKPGIHLGDI-GYAIQKHAEK--------------YGYSVVREFC 161
+ DI E + + +PG + ++ G ++ + R F
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFF 348
Query: 162 ----GHGIGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKT 217
H +G + H+ V YG + L+ GM+ TV P G I
Sbjct: 349 MHGLSHWLGLDVHD---VGVYGQDRS-RILEPGMVLTVAP--------------GLYIA- 389
Query: 218 KDRSLSAQW-------EHTVLVTKNGFEVLT 241
D + Q+ E +++T+ G E LT
Sbjct: 390 PDAEVPEQYRGIGIRIEDDIVITETGNENLT 420
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 47.8 bits (114), Expect = 1e-06
Identities = 42/288 (14%), Positives = 84/288 (29%), Gaps = 62/288 (21%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGG--IPF 58
MR A K++ + G + EI Q P+
Sbjct: 168 MREANKIAVQGHKAARDAFFQGKSEFEIQ---------------QAYLLATQHSENDNPY 212
Query: 59 PKSICTS-VNDVVCHGIPGNK-ILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAK 115
+I N + H ++ ID NGY D +R + GE
Sbjct: 213 G-NIVALNENCAILHYTHFDRVAPATHRSFLIDAGANFNGYAADITRTYDFTGEGE--FA 269
Query: 116 RLSDISFECMWIGIVKIKPGIHLGDI-GYAIQKHAE---KYG-----------YSVVREF 160
L + + ++ PG G++ Q+ A+ + + F
Sbjct: 270 ELVATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGITSTF 329
Query: 161 CGHGIG--------------KNFHEEPRVMNYGIPG--TLEKLKTGMIFTVEPMINEGRK 204
HG+G + + G P K++ +FT+EP +
Sbjct: 330 FPHGLGHHIGLQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLYFIDS 389
Query: 205 EIKEMSDGWTIKTKD-RSLSAQW-------EHTVLVTKNGFEVLTISP 244
+ +++ + + ++ E ++V ++ E +T
Sbjct: 390 LLGDLAATDNNQHINWDKVAELKPFGGIRIEDNIIVHEDSLENMTREL 437
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 40.8 bits (96), Expect = 3e-04
Identities = 47/286 (16%), Positives = 89/286 (31%), Gaps = 61/286 (21%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGG--IPF 58
MR A KL+ + G + +IN ++G +P+
Sbjct: 168 MREANKLAVAGHKAAEQAFREGKSEFDIN---------------LAYAAASRQGDNDVPY 212
Query: 59 PKSICTS-VNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGE--PSLVA 114
SI + + H + + K+ ID +GY D +R + S +
Sbjct: 213 T-SIVALNEHASILHYMQCDTVAPKESRSFLIDAGANYHGYAADITRTYAQEGVHNSAMF 271
Query: 115 KRLSDISFECMWIGIVKIKPGIHLGDI-GYAIQKHAE---KYG-----------YSVVRE 159
+ L + + +KPG+ DI A A+ G + R
Sbjct: 272 RDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNLTPPEIVEMGITRT 331
Query: 160 FCGHGIG--------------KNFHEEPRVMNYGIPG--TLEKLKTGMIFTVEPMINEGR 203
F HGIG + P+ P ++ +FT+EP +
Sbjct: 332 FFPHGIGHFLGLQVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMVEARQVFTIEPGLYFID 391
Query: 204 KEIKEMSDGWTIKTKDRSLSAQW--------EHTVLVTKNGFEVLT 241
++++ K + + E ++V ++ E +T
Sbjct: 392 SLLRDLKATPASKYINWDTIDAYKPFGGIRIEDNIIVHRDKNENMT 437
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 35.3 bits (82), Expect = 0.018
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 162 GHGIGK--NFHEEPRVMNYGIPGTLEKLKTGMIFTVEP 197
GHG+G N HE P ++Y E L+ GMI T EP
Sbjct: 488 GHGVGSFLNVHEGPCGISYKTFSD-EPLEAGMIVTDEP 524
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.056
Identities = 30/306 (9%), Positives = 79/306 (25%), Gaps = 108/306 (35%)
Query: 2 RIAGKLSAEVL--DYIAPFIKPGVTTE----EINEICHNYMVN-IQNTIPAPLNYCPQKG 54
+ K EVL +Y F+ + TE + + + + N
Sbjct: 77 EMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---------- 124
Query: 55 GIPFPKSICTSVNDVVCHGIPGNKILKKGDILNID----ITVIKNGYYGDTSRMFYVGEP 110
F K +V+ + + L++ +L + + + G + G+
Sbjct: 125 --VFAKY---NVSRLQPY-----LKLRQA-LLELRPAKNVLI-----DG----VLGSGKT 164
Query: 111 SLVAKRLSDISFECM------WIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHG 164
+ +C W+ ++ ++ + ++++ +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWL------------NLK---NCNSPETVLEMLQKLL-YQ 208
Query: 165 IGKNFHEEPRVMNYGIPGTLEKLKTG--MIFTVEP-----MINEGRKEIKEMSDGWTIK- 216
I N+ I + ++ + +P ++ + + +
Sbjct: 209 IDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLV------LLNVQNAKAWNA 261
Query: 217 ----------TKDRSL-----SAQWEHTVLV-TKNGFE----------VLTISPN-MPYP 249
T+ + + +A H L L P +P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-R 320
Query: 250 SKCIIN 255
N
Sbjct: 321 EVLTTN 326
Score = 29.4 bits (65), Expect = 1.3
Identities = 28/212 (13%), Positives = 63/212 (29%), Gaps = 56/212 (26%)
Query: 9 AEVLDYIAP---------FIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQ-KGGIPF 58
+V D+++ +T +E+ + Y+ +P + P
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------REVLTTNPR 328
Query: 59 PKSIC-TSVNDVVCH--GIPGNKILKKGDILNIDITVIKNG----YYGDTSRMFYVGE-- 109
SI S+ D + K I+ + V++ + S +F
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHI 387
Query: 110 PSLVAKRL--SDISFECMWI-------GIVKIKP-----GIHLGDIGYAIQKHAEKYG-- 153
P+++ + I + M + +V+ +P I I ++ E
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYAL 445
Query: 154 -------YSVVREFCGHGIGKNFHEEPRVMNY 178
Y++ + F + P + Y
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIP-----PYLDQY 472
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.073
Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 35/94 (37%)
Query: 2 RIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPKS 61
R+A S E L Y+ + G T + EI NY N++N Q
Sbjct: 1816 RVAASFSQEALQYVVERV--GKRTGWLVEIV-NY--NVENQ---------Q--------- 1852
Query: 62 ICTSVNDVVCHG-IPG----NKILKKGDILNIDI 90
V G + +L + IDI
Sbjct: 1853 -------YVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Score = 32.3 bits (73), Expect = 0.17
Identities = 34/218 (15%), Positives = 61/218 (27%), Gaps = 92/218 (42%)
Query: 7 LSAEVLDYIAPFIKPG-------VTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFP 59
L + L Y++ ++P V + E + Y+
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG--------------------- 98
Query: 60 KSICTSVNDVVCH-------GIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSL 112
ND+ H ++K ++ IKN Y T+R+ P
Sbjct: 99 -------NDI--HALAAKLLQENDTTLVKTKEL-------IKN-YI--TARIM-AKRP-- 136
Query: 113 VAKRLSDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEE 172
K+ + F + G ++ AI F G G ++ EE
Sbjct: 137 FDKKSNSALFRAVGEGNAQL----------VAI--------------FGGQGNTDDYFEE 172
Query: 173 PRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMS 210
R + Y L V +I + + E+
Sbjct: 173 LRDL-YQTYHVL----------VGDLIKFSAETLSELI 199
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 28.7 bits (63), Expect = 1.7
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 56 IPFPKSICTSVNDVVCHGIPGNKILKKGDILNIDIT-VIKNGYYGDTSRMFYVGEP 110
I FP N+V K G D+T +K + + Y
Sbjct: 137 IQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPADLTPHLKPYTQQNNVELIYAFTT 192
>3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase,
hexxgh-motif, aminopeptidase hydrolase, metal-binding,
metalloprotease; 1.95A {Saccharomyces cerevisiae}
Length = 711
Score = 27.9 bits (61), Expect = 4.3
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 159 EFCGHGIGKNFHEEPRVMNY-----GIPGTLEKLKT 189
E GHG GK E N+ + + + T
Sbjct: 461 ELLGHGSGKLLTEFTDGFNFDKENPPLGLDGKPVST 496
>2vi7_A Acetyltransferase PA1377; GNAT, GCN5 family, N-acetyltransferase,
hypothetical protein; 2.25A {Pseudomonas aeruginosa}
Length = 177
Score = 26.9 bits (60), Expect = 4.8
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 97 YYGDTSRMFYVGE---PSL--VAKRLSDISFECMWIGIVKIKPGIHLGDIG-----YAIQ 146
Y D + V + S+ KRL D + + + +V + G +G +
Sbjct: 24 LYNDPAVARQVLQMPYQSVEQRRKRLHDSADDDRLLILVALHQGDVIGSASLEQHPRIRR 83
Query: 147 KHAEKYGYSVVREFCGHGIGK 167
H+ G V + G G+G
Sbjct: 84 SHSGSIGMGVAVAWQGKGVGS 104
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune
system; 1.45A {Drosophila melanogaster}
Length = 107
Score = 26.3 bits (58), Expect = 5.3
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 77 NKILKKGDILNIDITVIKNGY-YGDTSRMFYVGE 109
LK GD L VI NG Y + F V
Sbjct: 65 ITALKPGDTLYYWTYVIYNGLGYREDDGSFVVNG 98
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure
initiative, midwest center for struc genomics, MCSG;
HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP:
d.108.1.1
Length = 170
Score = 26.5 bits (59), Expect = 7.0
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 136 IHLGDIGYAIQKHAEKYGYSVVREFCGHGIGK 167
+ A + H G ++ + G+G
Sbjct: 73 CDIRRQDRATRAHCGTLGMGILPAYRNKGLGA 104
>2fck_A Ribosomal-protein-serine acetyltransferase, putat;
ribosomal-protein structural genomics, PSI, protein
structure initiative; HET: MSE; 1.70A {Vibrio cholerae
o1 biovar eltor} SCOP: d.108.1.1
Length = 181
Score = 26.4 bits (59), Expect = 7.0
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 127 IGIVKIKPGIHLGDIGYAIQKHAEKYGY 154
+ I + ++ +GY I ++ GY
Sbjct: 87 VAINEFYHTFNMASLGYWIGDRYQRQGY 114
>1b22_A DNA repair protein RAD51; DNA binding, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; HET: DNA; NMR {Homo
sapiens} SCOP: a.60.4.1
Length = 114
Score = 25.7 bits (56), Expect = 7.4
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 177 NYGI-PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKN 235
GI ++KL+ TVE + +KE+ + G + D+ L+ + +
Sbjct: 30 QCGINANDVKKLEEAGFHTVEAVAYAPKKELINIK-GISEAKADKILAEAAKLVPMGFTT 88
Query: 236 GFEVL 240
E
Sbjct: 89 ATEFH 93
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response,
innate immunity, secreted, sugar binding protein; NMR
{Plodia interpunctella}
Length = 130
Score = 26.1 bits (57), Expect = 7.9
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 80 LKKGDILNIDITVIKNGY-YGDTSRMFYVGE 109
LK GD + VIK+G Y + + V E
Sbjct: 78 LKLGDKIYFWTYVIKDGLGYRQDNGEWTVTE 108
>2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur
genomics, PSI-2, protein structure initiative; HET: ACO;
2.10A {Streptococcus pneumoniae}
Length = 172
Score = 26.2 bits (58), Expect = 8.1
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 127 IGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGK 167
GIV I +H + + + +G+G
Sbjct: 71 AGIVNITAD------QRKRVRHIGDLFIVIGKRYWNNGLGS 105
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.6 bits (58), Expect = 8.5
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 14/99 (14%)
Query: 139 GDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEP--RVMN-YGIPGTLEKLKTGMIFTV 195
G +G AIQ + YS + P R+++ + T +K K ++
Sbjct: 114 GSVGMAIQVN-----YSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAY 168
Query: 196 EPMINEG-----RKEIKEMSDGWTIKTKD-RSLSAQWEH 228
EP N + + ++ L+ +
Sbjct: 169 EPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTF 207
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 26.4 bits (59), Expect = 9.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 132 IKPGIHLGDIG--------YAIQKHAEKYGYSVV 157
++PG+ L DIG +A +Y +V+
Sbjct: 70 LEPGMTLLDIGCGWGSTMRHA----VAEYDVNVI 99
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 26.4 bits (59), Expect = 9.5
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 220 RSLSAQWEHTVLVTKNGFEVLT 241
S++ +HTV +++G EV +
Sbjct: 71 VSVTCGADHTVAYSQSGMEVYS 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.432
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,147,781
Number of extensions: 254673
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 70
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.1 bits)