RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3761
(256 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 210 bits (536), Expect = 1e-68
Identities = 137/245 (55%), Positives = 192/245 (78%), Gaps = 7/245 (2%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
MR+AG+L+AEVL+ I P++KPGV+T E++ IC++Y+VN Q+ + A L Y +PK
Sbjct: 12 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG------YPK 65
Query: 61 SICTSVNDVVCHGIPGN-KILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
S+C S+N+VVCHGIP + K+LK GDI+NID+TVIK+G++GDTS+MF VG+P+++ +RL
Sbjct: 66 SVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCR 125
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
I+ E +++ + +KPGI+L +IG AIQK E G+SVVRE+CGHGIG+ FHEEP+V++Y
Sbjct: 126 ITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYD 185
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
T LK GM FT+EPM+N G+KEI+ M DGWT+KTKDRSLSAQ+EHT++VT NG E+
Sbjct: 186 SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEI 245
Query: 240 LTISP 244
LT+
Sbjct: 246 LTLRK 250
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 179 bits (453), Expect = 2e-56
Identities = 90/242 (37%), Positives = 136/242 (56%), Gaps = 8/242 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
M+ AGK A L + I PG T ++ + ++ KG +
Sbjct: 13 MKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRV-------KPAFKGYGGYKY 65
Query: 61 SICTSVNDVVCHGIPG-NKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
+ C SVN+ V HG+P K+ K+GDI+++D+ + G YGD + + VGE K L
Sbjct: 66 ATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVR 125
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYG 179
++ E + I IKPGI LGD+ + IQ+ E G++V+R++ GHG+G+ HE+P++ NYG
Sbjct: 126 VTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYG 185
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
PGT L+ GM +EPM++EG + DGWT T D S A +EHT+L+T+NG E+
Sbjct: 186 TPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEI 245
Query: 240 LT 241
LT
Sbjct: 246 LT 247
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 155 bits (393), Expect = 7e-47
Identities = 50/251 (19%), Positives = 86/251 (34%), Gaps = 30/251 (11%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
R A + +V Y+ +IKPG+T EI E + + G+ FP
Sbjct: 60 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGL-------NAGLAFPT 112
Query: 61 SICTSVNDVV-CHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSD 119
+ +L+ DI ID +G D + L
Sbjct: 113 GCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKY---DTLLK 169
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKH---------AEKYGYSVVREFCGHGIGKNFH 170
+ GI + L D+G AIQ+ + Y +R GH IG+
Sbjct: 170 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 229
Query: 171 EEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTV 230
+ + G +++ G ++ +E + G + S +AQ+EHT+
Sbjct: 230 HAGKTVPIVKGGEATRMEEGEVYAIETFGS----------TGKGVVDIKGSYTAQFEHTI 279
Query: 231 LVTKNGFEVLT 241
L+ EV++
Sbjct: 280 LLRPTCKEVVS 290
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 130 bits (328), Expect = 2e-37
Identities = 47/260 (18%), Positives = 90/260 (34%), Gaps = 36/260 (13%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+R AG+++A +PG+ + H+ P+
Sbjct: 8 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIV---------- 57
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYV-GEPSLVAKRLSD 119
+ N + H ++ GD++ ID GY GD +R F V G+ + + + D
Sbjct: 58 --GSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYD 115
Query: 120 ISFECMWIGIVKIKPGIHLGDI---------------GYAIQKHAEKYGYSVVREFCGHG 164
I E + + +PG + ++ G E + R F HG
Sbjct: 116 IVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHG 175
Query: 165 IGKNFHEEPRVMNYGIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSA 224
+ + + L+ GM+ TV P + ++ + + R +
Sbjct: 176 LSHWLGLDVHDVGVYGQDRSRILEPGMVLTVAPGLY--------IAPDAEVPEQYRGIGI 227
Query: 225 QWEHTVLVTKNGFEVLTISP 244
+ E +++T+ G E LT S
Sbjct: 228 RIEDDIVITETGNENLTASV 247
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 127 bits (320), Expect = 1e-36
Identities = 81/243 (33%), Positives = 126/243 (51%), Gaps = 9/243 (3%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
++ G + A+V + + KPG+TT+E++ I FP
Sbjct: 12 LKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGA-------ISAPIHDENFPG 64
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVA-KRLSD 119
C SVN+ V HGIP +++++GD++NID++ +KNGYY DT F VGE +++ D
Sbjct: 65 QTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCD 124
Query: 120 ISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRV-MNY 178
++ I K+KPG L +IG A+ A + V++ GHG+G + HE P +NY
Sbjct: 125 VATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNY 184
Query: 179 GIPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFE 238
P L GM+ +EP I+ + E + W +T D+S AQ EHTV+VTK+G
Sbjct: 185 FDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPI 244
Query: 239 VLT 241
+ T
Sbjct: 245 LTT 247
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 120 bits (300), Expect = 6e-34
Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 34/245 (13%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+ A +++ + + I G E+ M PA
Sbjct: 9 IEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTII---------- 58
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
+ + HG+ +K +++GD++ ID+ + N Y D +R VG P+ + + +I
Sbjct: 59 --ASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEI 116
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYS-VVREFCGHGIGKNFHEEPRVMNYG 179
E + KPG+ ++ ++ ++YGY GHG+G HE PR+ Y
Sbjct: 117 VLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQYD 176
Query: 180 IPGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFEV 239
LK GM+ T+EP I + + E TVL+T+NG +
Sbjct: 177 ET----VLKEGMVITIEPGI-----------------YIPKLGGVRIEDTVLITENGAKR 215
Query: 240 LTISP 244
LT +
Sbjct: 216 LTKTE 220
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 115 bits (288), Expect = 3e-32
Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 37/245 (15%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+ AG+++ +V + +PG+ E+ E ++ +
Sbjct: 6 LMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGG---------------KPAF 50
Query: 61 SICTSVNDVVCHGIP---GNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRL 117
+ S+N++ H P +LK+GD L ID+ V +G+ DT+ VG L
Sbjct: 51 PVNLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEE---DEL 107
Query: 118 SDISFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMN 177
+ + E + I + G+ + ++G AI+ K G+ + GH I + +
Sbjct: 108 MEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIP 167
Query: 178 YGI-PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNG 236
P LK G +F +EP G + AQ+EHT++V K+
Sbjct: 168 NIYRPHDNYVLKEGDVFAIEPFATIG---------------ARNGIVAQFEHTIIVEKDS 212
Query: 237 FEVLT 241
V T
Sbjct: 213 VIVTT 217
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 110 bits (275), Expect = 5e-30
Identities = 51/249 (20%), Positives = 87/249 (34%), Gaps = 21/249 (8%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNYMVNIQNTIPAPLNYCPQKGGIPFPK 60
+R +++ + + V E+ MV + +
Sbjct: 11 IRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVEL------MDTWT 64
Query: 61 SICTSVNDVVCHGIPGNKILKKGDILNIDITVIKNGYYGDTSRMFYVGEPSLVAKRLSDI 120
+ +N H + + KGDIL+++ + GYY R ++ S RL +
Sbjct: 65 WFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQV 124
Query: 121 SFECMWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREF-CGHGIGKNFHEEPRVMNYG 179
+ E G+ IKPG DI + + K+ R F GH G H R
Sbjct: 125 NVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLE 184
Query: 180 I-PGTLEKLKTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRSLSAQWEHTVLVTKNGFE 238
+ L+ GM+ ++EPMI + +G R ++V +NG E
Sbjct: 185 LREDIDTVLEPGMVVSMEPMIM--------LPEGLPGAGGYR-----EHDILIVNENGAE 231
Query: 239 VLTISPNMP 247
+T P P
Sbjct: 232 NITKFPYGP 240
>d2heyr1 g.24.1.1 (R:83-142) Tumor necrosis factor receptor
superfamily member 4, OX40L receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 26.5 bits (58), Expect = 0.78
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 46 PLNYCPQKGGIPFPKSICTSVNDVVCHGIPGNK 78
P +C + G K +CT+ D VC G +
Sbjct: 1 PCTWCNLRSGSE-RKQLCTATQDTVCRCRAGTQ 32
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 161
Score = 27.8 bits (61), Expect = 0.89
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 135 GIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGIPGT 183
+ + +A+QK ++ + G GI G T
Sbjct: 39 LVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSAST 87
>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1,
saccharide binding domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 302
Score = 25.9 bits (56), Expect = 4.6
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 45 APLNYCPQKGGIPFPKSICTSVNDVVCHGIPGNKI 79
+PL P G ++ + ++ HG K+
Sbjct: 205 SPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKL 239
>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 297
Score = 25.1 bits (54), Expect = 8.1
Identities = 8/55 (14%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 28 INEICHNYMVNIQNT--IPAPLNYCPQKGGIPFPKSICTSVNDVVCHGIPGNKIL 80
+N + +++ + + +PL ++ G ++ +V + G P +K++
Sbjct: 186 VNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLI 240
>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 118
Score = 24.3 bits (52), Expect = 8.9
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNY 35
+ +++E++ IA ++ +T E+ + Y
Sbjct: 68 GVVVAPIASELILPIAVAVQNRITVNELAQTLAVY 102
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 24.8 bits (53), Expect = 9.4
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 11/98 (11%)
Query: 125 MWIGIVKIKPGIHLGDIGYAIQKHAEKYGYSVVREFCGHGIGKNFHEEPRVMNYGIPGTL 184
+ +G I G++ + G VV G++ R G+ T
Sbjct: 1 LRVGF------IGFGEVAQTLASRLRSRGVEVV----TSLEGRSPSTIERARTVGVTETS 50
Query: 185 EKL-KTGMIFTVEPMINEGRKEIKEMSDGWTIKTKDRS 221
E+ + + + D +
Sbjct: 51 EEDVYSCPVVISAVTPGVALGAARRAGRHVRGIYVDIN 88
>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 115
Score = 24.3 bits (52), Expect = 9.8
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 1 MRIAGKLSAEVLDYIAPFIKPGVTTEEINEICHNY 35
+I G +++++ + I+ G+T E+I H +
Sbjct: 66 AQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAH 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.432
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,055,019
Number of extensions: 51240
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 23
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)