BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3762
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 633 bits (1633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/596 (49%), Positives = 417/596 (69%), Gaps = 8/596 (1%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
MRT YCG + + Q ++LCGWV+R+R+ G +IFID+RD G+VQ+ FDP+ K+A
Sbjct: 1 MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA 60
Query: 61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV 120
+RNEFC+Q+ G V +R K N ++ +G IE+L L I+N + LP + N E
Sbjct: 61 SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNT-EE 119
Query: 121 TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVP 180
LKYR L LR M + L+ R K+T VR+F+D F++IETP+L+K+TPEGARDYLVP
Sbjct: 120 ARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVP 179
Query: 181 SRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240
SR++ G+F+ALPQSPQLFKQLLM++ FDRYYQI KCFRDEDLR+DRQPEFTQID ETSFM
Sbjct: 180 SRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFM 239
Query: 241 NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300
++R + E ++R ++ + + L + FPV+ ++ A + YGSDKPD+ + TD+ ++
Sbjct: 240 TAPQVREVMEALVRHLWLEVKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTDVADL 298
Query: 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKIS 360
+K +F +F+ AN GR+ L++PGG S++R +I+ Y FVK YGAKGL YIK+++ +
Sbjct: 299 LKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERA 358
Query: 361 KEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDF 420
K +G+ SP+ K+ N I+E I+++T AQ+GD+IF G D K IV + M ALR+K+G D
Sbjct: 359 KGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVG-KDL 417
Query: 421 GKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKA 480
G + +KW PLWVI+FPMF+ D A HHPFT+PKD + PE + A
Sbjct: 418 GLTD---ESKWAPLWVIDFPMFE-DDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANA 473
Query: 481 YDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAF 540
YD++ING+E+GGGS+RIH+ ++Q+ +F +L I+ + + +FGFLL++LKYG PPH G+AF
Sbjct: 474 YDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAF 533
Query: 541 GLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNI-LYKKTKN 595
GLDRL ++TG+ +IRDVIAFPKT +A CL+T APS + L EL+I + KK +N
Sbjct: 534 GLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAEN 589
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 291/588 (49%), Positives = 412/588 (70%), Gaps = 7/588 (1%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
MRT YCG + + Q ++LCGWV+R+R+ G +IFID+RD G+VQ+ FDP+ K+A
Sbjct: 1 MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA 60
Query: 61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV 120
+RNEFC+Q+ G V +R K N ++ +G IE+L L I+N + LP + N E
Sbjct: 61 SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNT-EE 119
Query: 121 TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVP 180
LKYR L LR M + L+ R K+T VR+F+D F++IETP+L+K+TPEGARDYLVP
Sbjct: 120 ARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVP 179
Query: 181 SRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240
SR++ G+F+ALPQSPQLFKQLLM++ FDRYYQI KCFRDEDLR+DRQPEFTQID ETSFM
Sbjct: 180 SRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFM 239
Query: 241 NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300
++R + E ++R ++ + + L + FPV+ ++ A + YGSDKPD+ + TD+ ++
Sbjct: 240 TAPQVREVMEALVRHLWLEVKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTDVADL 298
Query: 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKIS 360
+K +F +F+ AN GR+ L++PGG S++R +I+ Y FVK YGAKGL YIK+++ +
Sbjct: 299 LKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERA 358
Query: 361 KEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDF 420
K +G+ SP+ K+ N I+E I+++T AQ+GD+IF G D K IV + M ALR+K+G D
Sbjct: 359 KGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVG-KDL 417
Query: 421 GKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKA 480
G + +KW PLWVI+FPMF+ D A HHPFT+PKD + PE + A
Sbjct: 418 GLTD---ESKWAPLWVIDFPMFE-DDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANA 473
Query: 481 YDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAF 540
YD++ING+E+GGGS+RIH+ ++Q+ +F +L I+ + + +FGFLL++LKYG PPH G+AF
Sbjct: 474 YDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAF 533
Query: 541 GLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNI 588
GLDRL ++TG+ +IRDVIAFPKT +A CL+T APS + L EL+I
Sbjct: 534 GLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSI 581
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 484 bits (1247), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/595 (41%), Positives = 368/595 (61%), Gaps = 28/595 (4%)
Query: 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAK 61
RTHY G++ E + + + L GWV+R+R+ GG+IF+DLRD GLVQ+V P Y A+
Sbjct: 3 RTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPAS-PAYATAE 61
Query: 62 IIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDE------- 114
+R E+ ++ G V RP N L +G +E+ L++L + T PF +D
Sbjct: 62 RVRPEWVVRAKGLVRLRPEP--NPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEE 119
Query: 115 KNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGA 174
K E LKYR L LR + MQ+NLRLR++V + FLD + F+++ETP L+KSTPEGA
Sbjct: 120 KEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
Query: 175 RDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQID 234
RD+LVP R PG F+ALPQSPQLFKQ+LMVA DRY+QI +CFRDEDLR+DRQP+FTQ+D
Sbjct: 180 RDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLD 239
Query: 235 CETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIF 294
E SF+ E++ L E ++ +F + L ++LP PFP + + A++ YGSDKPD+ L
Sbjct: 240 LEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLEL 299
Query: 295 TDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYI 354
++ + + S F++F + ++K L +P ++SR E+ + K + A+GL +
Sbjct: 300 KEVGPLFRQSGFRVFQEAESVK-----ALALPK--ALSRKEVAELEEVAKRHKAQGLAWA 352
Query: 355 KIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIK 414
++ E G + K+ + E ++ TEA+ GD + + + + A+R++
Sbjct: 353 RV-----EEGGFSGGVAKFLEP-VREALLQATEARPGDTLLFVAGPRKVAATALGAVRLR 406
Query: 415 IGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPE 474
KR LWV++FP+ ++D+ W HHPFT+P + +P
Sbjct: 407 AADLLGLKREGFRF-----LWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPG 461
Query: 475 KIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPP 534
++ + AYDL++NG E+GGGSIRIHD +Q ++F++L I + + +FGF L +L+YGAPP
Sbjct: 462 RVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPP 521
Query: 535 HGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNIL 589
HGGIA+GLDRL+ +MTGS SIR+VIAFPK + + LT APS V E+QL EL ++
Sbjct: 522 HGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLM 576
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 230/609 (37%), Positives = 348/609 (57%), Gaps = 33/609 (5%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
+RT+ CG + L Q ++LCGW+ +R + F+ LRD+ GLVQ++ P D +
Sbjct: 10 VRTNTCGELRSSHLGQEVTLCGWIQYRRQN---TFLVLRDFDGLVQVII-PQDESAASVK 65
Query: 61 KIIRN---EFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNI 117
KI+ E +Q+ G V SRP N + +G IEI + ++LN+ LPF+I KN
Sbjct: 66 KILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFEI--KNF 123
Query: 118 L---EVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFL-DSKKFIEIETPILSKSTPEG 173
+ E L+YR L LR MQ NLRLR ++ M++R++L + F++IETP L K TP G
Sbjct: 124 VKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGG 183
Query: 174 ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQI 233
A+++LVPSR PG+F++LPQSPQ FKQLLMV DRY+Q+ +C+RDE R DRQPEFTQI
Sbjct: 184 AKEFLVPSR-EPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQI 242
Query: 234 DCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLP--NPFPVIEWSTAIKLYGSDKPDMCIK 291
D E SF+++ I++L E +++ Y N K P PFP + ++ + YG+DKPD
Sbjct: 243 DIEMSFVDQTGIQSLIEGLLQ---YSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFG 299
Query: 292 LIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFS-ISRNEINYYTQFVKTYGAKG 350
+ D++++ ++++ + +G + + IP G + R +I F + +
Sbjct: 300 MKIIDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQE 359
Query: 351 LTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSA 410
+ + ++ SP+ + ++I E Q D++ L E N + +
Sbjct: 360 ILPVFLNANR----NWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGK 415
Query: 411 LRIKIGYSDFGKRNNILNNK--WHPLWVINFPMFKYDKINNNWI-ARHHPFTAPKDGYED 467
LR++ R +L + + LWV++FP+F + N + + HHPFTAP
Sbjct: 416 LRLECA-DLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIH 474
Query: 468 FIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFK-VLNIDNKIVKTQFGFLLN 526
+ T P+K S+ YDL++NG EIGGGSIRIH+AE+Q+ I +L D K++ LL
Sbjct: 475 LLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVKML----SHLLQ 530
Query: 527 SLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNEL 586
+L YGAPPHGGIA GLDRLI ++TGS SIRDVIAFPK+ L++N P V ++L
Sbjct: 531 ALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFRGHDLMSNTPDSVPPEELKPY 590
Query: 587 NILYKKTKN 595
+I K +
Sbjct: 591 HIRVSKPTD 599
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 148/300 (49%), Gaps = 28/300 (9%)
Query: 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPN--DIKIYKI 59
RTHY ITE+L Q + + GWV ++ GGI F+ +RD G+VQI D +++K+
Sbjct: 3 RTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKL 62
Query: 60 AKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT-LPFQIDEKNIL 118
+R+E + + G V N T L EIL ++ +LN + T LP K
Sbjct: 63 IPKLRSEDVVAVEGVV----NFTPKAKL---GFEILPEKIVVLNRAETPLPLDPTGKVKA 115
Query: 119 EV-TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDY 177
E+ T L R + LR + ++R V VR F FIEI TP + + EG +
Sbjct: 116 ELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTE- 174
Query: 178 LVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCE 236
L P + + F L QSPQL+KQ++M + DR Y+I FR E+ + R E ID E
Sbjct: 175 LFPMKYFEEDAF-LAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSE 233
Query: 237 TSFM-NEEEIRNLFEEMI-RVIFY---------KTLNIKLPN---PFPVIEWSTAIKLYG 282
+F+ +EEE+ + E ++ I Y LN +L PFP + + A+++ G
Sbjct: 234 MAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILG 293
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 479 KAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGI 538
+A+DL G EI G R H +I + K ++ + F F L + +YG PPHGG
Sbjct: 351 RAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPE----SFEFYLKAFRYGMPPHGGF 406
Query: 539 AFGLDRLITIMTGSKSIRDVIAFPKTQ 565
G +RLI M +IR+VI FP+ +
Sbjct: 407 GLGAERLIKQMLDLPNIREVILFPRDR 433
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 148/300 (49%), Gaps = 28/300 (9%)
Query: 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPN--DIKIYKI 59
RTHY ITE+L Q + + GWV ++ GGI F+ +RD G+VQI D +++K+
Sbjct: 3 RTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKL 62
Query: 60 AKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT-LPFQIDEKNIL 118
+R+E + + G V N T L EIL ++ +LN + T LP K
Sbjct: 63 IPKLRSEDVVAVEGVV----NFTPKAKL---GFEILPEKIVVLNRAETPLPLDPTGKVKA 115
Query: 119 EV-TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDY 177
E+ T L R + LR + ++R V VR F FIEI TP + + EG +
Sbjct: 116 ELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTE- 174
Query: 178 LVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCE 236
L P + + F L +SPQL+K+++M + DR Y+I FR E+ + R E ID E
Sbjct: 175 LFPMKYFEEDAF-LAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSE 233
Query: 237 TSFM-NEEEIRNLFEEMI-RVIFY---------KTLNIKLPN---PFPVIEWSTAIKLYG 282
+F+ +EEE+ + E ++ I Y LN +L PFP + + A+++ G
Sbjct: 234 MAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILG 293
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 479 KAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGI 538
+A+DL G EI G R H +I + K ++ + F F L + +YG PPHGG
Sbjct: 351 RAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPE----SFEFYLKAFRYGMPPHGGF 406
Query: 539 AFGLDRLITIMTGSKSIRDVIAFPKTQ 565
G +RLI M +IR+VI FP+ +
Sbjct: 407 GLGAERLIKQMLDLPNIREVILFPRDR 433
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 159/327 (48%), Gaps = 34/327 (10%)
Query: 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAK 61
R+H+ ++T + + + GWVH R+ GG FI LRD TGL Q+V D N + I++
Sbjct: 3 RSHFIADVTPEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNS-SAFGISQ 61
Query: 62 IIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV- 120
+ E +Q+ G V + L + I +L + + LP + K ++
Sbjct: 62 ELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSK------AKAPLPLDVSGKVKADID 115
Query: 121 TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETP-ILSKSTPEGARDYLV 179
T L+ RVL LR + MQ ++++ R+ L + FIEI TP I++ +T GA+ + V
Sbjct: 116 TRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPV 175
Query: 180 PSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSD-RQPEFTQIDCETS 238
I G+ L QSPQL+K+ LM +R +++ +R E+ + EF +D E +
Sbjct: 176 ---IYFGKEAFLAQSPQLYKE-LMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMA 231
Query: 239 FMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCI---KLIFT 295
F + ++ L E+++ I KT+ E +K+ + P++ I +L +T
Sbjct: 232 FADYNDVMQLLEKILHNIV-KTIK---------EEGKEELKILNYEPPEVKIPIKRLKYT 281
Query: 296 DLTNIMKDSDFKLFSKIANMKNGRIIG 322
+ I++ SK N+K G IG
Sbjct: 282 EAIEILR-------SKGYNIKFGDDIG 301
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 450 NWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKV 509
+W + PF Y NPE S+++DLI EI GS R H E+ ++ K
Sbjct: 321 DWPSDARPF------YTKSKSENPE--LSESFDLIYKFLEIVSGSTRNHKREVLEEALKK 372
Query: 510 LNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPK 563
+ + F F L YG PPH G GL RL+ ++TG +S+++++ FP+
Sbjct: 373 KGLKPE----SFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPR 422
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 36/297 (12%)
Query: 16 QVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKV 75
Q + L G++H +R+ G I F+ LRD +G+VQ+V K+ E L++ G V
Sbjct: 14 QEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG--------LKLPLPESALRVRGLV 65
Query: 76 CSRPNKTNNTNLISGNIEILCRELKILNSSIT-LPFQI--DEKNILEVTNLKYRVLYLRY 132
G +E+ +E+++L+ ++ P +I +E T L+YR + LR
Sbjct: 66 VENAKA-------PGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRG 118
Query: 133 KHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALP 192
+ + L+++ + R++LD + F EI TP + ++ EG + A
Sbjct: 119 EKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLA-- 176
Query: 193 QSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCETSFM-NEEEIRNLFE 250
QSPQL+KQ +MV F+R Y++ +R E+ + R E+ +D E F+ +EE++ L E
Sbjct: 177 QSPQLYKQ-IMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEE 235
Query: 251 EMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDM---CIKLIFTDLTNIMKDS 304
++ + + LN I+L G+ P +L + I+K+
Sbjct: 236 ALLAEMLEEALNTA----------GDEIRLLGATWPSFPQDIPRLTHAEAKRILKEE 282
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 478 SKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGG 537
++++DL+ G EI G RIH E + K +D + F L KYG PPHGG
Sbjct: 334 TRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEA----FHGYLEVFKYGMPPHGG 389
Query: 538 IAFGLDRLITIMTGSKSIRDVIAFPK 563
A G +RL + G ++R AFP+
Sbjct: 390 FAIGAERLTQKLLGLPNVRYARAFPR 415
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 29/298 (9%)
Query: 5 YCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYKIAKI 62
YC + +L + + L GWV+ G IF+ +RD TG+VQ V N + + ++ AK
Sbjct: 6 YCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKK 65
Query: 63 IRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTN 122
+ E + + G V + G E+ +L+++ + P + +
Sbjct: 66 LGRESSVIVEGIVKA-------DERAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELL 118
Query: 123 LKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSR 182
L YR L++R ++++ + M R++L + E+ PIL EG
Sbjct: 119 LDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKY 178
Query: 183 INPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCETSFMN 241
+ ++ L QS QL+ + + ++ + +T FR E R+ R EF ++ E ++M+
Sbjct: 179 FD--KYAYLSQSAQLYLE-AAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD 235
Query: 242 EEEIRNLFEEMIRVIFYKTLNIK-------------LPN---PFPVIEWSTAIKLYGS 283
+I + EE++ + +TL ++ L N PFP I + AI + S
Sbjct: 236 LWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQS 293
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 489 EIGGGSIRIHDAEIQKKIFKVLN--IDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLI 546
EI GGS R D + K+LN ++ + + + L+ +YG+ PH G G++RL+
Sbjct: 357 EIIGGSQREDDYD------KLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLV 410
Query: 547 TIMTGSKSIRDVIAFPKTQS 566
+ IR FP+T +
Sbjct: 411 AWVLKLDHIRWAALFPRTPA 430
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 138/298 (46%), Gaps = 27/298 (9%)
Query: 1 MRTHYCGNITEKL--LDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYK 58
+ + G E+L L+ +++ G + +R G F+ L+D G +Q+ +D+
Sbjct: 48 LHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLP--- 104
Query: 59 IAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT-LPFQIDEKNI 117
+ +F +G + K T +G + I C EL++L ++ LP D+ +
Sbjct: 105 -EGVYNEQFKKWDLGDILGAKGKLFKTK--TGELSIHCTELRLLTKALRPLP---DKFHG 158
Query: 118 LEVTNLKYRVLYLRY---KHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGA 174
L+ +YR YL + ++R ++ +R+F+ ++ F+E+ETP++ + P GA
Sbjct: 159 LQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMM-QVIPGGA 217
Query: 175 RDYLVPSRINPGEF-FALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQI 233
+ N + L +P+L+ + L+V F+R ++I + FR+E + PEFT +
Sbjct: 218 AARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMM 277
Query: 234 DCETSFMNEEEIRNLFEEMIRV----------IFYKTLNIKLPNPFPVIEWSTAIKLY 281
+ ++ + +++ L E + R + Y + + PF + AIK Y
Sbjct: 278 ELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKY 335
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 472 NPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIF--KVLNIDNKIVKTQF--GFLLNS 527
NPE + ++ I G EIG G ++DAE Q + F +V D + F + +
Sbjct: 406 NPE--ITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTA 463
Query: 528 LKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
L++G PP G+ G+DR++ + T S +IRDVI FP
Sbjct: 464 LEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFP 498
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 126/286 (44%), Gaps = 28/286 (9%)
Query: 18 ISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77
+++ G + KR G F ++D +G +Q P D+ + F +G + +
Sbjct: 89 VAIAGRMMLKRVMGKASFATVQDGSGQIQFFVTPADVGAETY-----DAFKKWDLGDIVA 143
Query: 78 RPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLRY---K 133
TN G + + C +L++L ++ LP D+ + L +YR Y+
Sbjct: 144 ARGVLFRTN--KGELSVKCTQLRLLAKALRPLP---DKFHGLADQETRYRQRYVDLIVTP 198
Query: 134 HMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGA--RDYLVPSRINPGEFFAL 191
+ R R K +RKF+ F+E+ETP+L P GA + ++ E F L
Sbjct: 199 ETRTTFRARTKAIASIRKFMGDADFMEVETPML-HPIPGGAAAKPFVTHHNALDMEMF-L 256
Query: 192 PQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEE 251
+P+L+ + L+V F+R ++I + FR+E + PEFT ++ ++ + + + E
Sbjct: 257 RIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTER 316
Query: 252 MIR----------VIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPD 287
+IR I Y+ + L PF + + AI+ Y D
Sbjct: 317 LIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYTD 362
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 52/246 (21%)
Query: 336 INYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINK-----TEAQN 390
+++ + ++ L I +E D L P F+ L + + I K T+ Q
Sbjct: 311 MDFTERLIRQAAVDALGTATIQYQGRELD-LAQP----FHRLTITQAIQKYAPSYTDGQL 365
Query: 391 GDIIFLGGDEKNI---------VNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPM 441
D FL + K + +N + AL++ + W P ++I++P
Sbjct: 366 SDDAFLRSELKRLGVDVTQPAFLNAGIGALQLAL------FEETAEAQLWEPTFIIDYP- 418
Query: 442 FKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAE 501
I + +AR A ++ ++L I G EI G ++D E
Sbjct: 419 -----IEVSPLARESDTVAG---------------ITERFELFITGREIANGFSELNDPE 458
Query: 502 IQKKIFKVLNIDNKIVKTQFGFLLNS-----LKYGAPPHGGIAFGLDRLITIMTGSKSIR 556
Q FK ++ K + ++ L+YG PP GG G+DRL+ ++T S +IR
Sbjct: 459 DQAARFKK-QVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIR 517
Query: 557 DVIAFP 562
DV+ FP
Sbjct: 518 DVLLFP 523
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 137/288 (47%), Gaps = 29/288 (10%)
Query: 13 LLDQVISLCGWV-HRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQI 71
L ++++ GW H ++ +IF++LRD +G Q V ++ + K++ E L+I
Sbjct: 28 LEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEI 87
Query: 72 IGKVCSRPNKTNNTNLIS-GNIEILCRELKILNSSITLPFQIDEKNILEVTN-----LKY 125
G++ + K + + N+E+ E K++ S ID +NI+ + ++
Sbjct: 88 TGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES-----PIDLENIINKDSSIPQKMQN 142
Query: 126 RVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINP 185
R + +R +H Q+ L+LR ++ RK+ F EI+ P + K+ EG N
Sbjct: 143 RHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNE 202
Query: 186 GEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCETSFMNEEE 244
+ L QS QL+ + + +A+ + + + +R E R+ R E+ ++ E F++ E+
Sbjct: 203 PAY--LTQSSQLYLESV-IASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFED 259
Query: 245 IRNLFEEMIRVIFYKTL------------NIKLPN-PFPVIEWSTAIK 279
+ N E+++ + + ++KLP PF + ++ AIK
Sbjct: 260 LLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIK 307
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 477 FSKAYDLIING-WEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPH 535
+++ DL++ G EI GGS+RI + + +K N + + + KYG+ PH
Sbjct: 366 LTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKA----NGLNPDPYYWYTQQRKYGSCPH 421
Query: 536 GGIAFGLDRLITIMTGSKSIRDVIAFPK 563
GG G++RL+ + G IR V +P+
Sbjct: 422 GGYGLGVERLVMWLLGEDHIRKVCLYPR 449
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 25/279 (8%)
Query: 18 ISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77
+S+ G + +R G F+ L+D G +Q+ + + + ++F +G +
Sbjct: 67 VSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLP----EGVYNDQFKKWDLGDIIG 122
Query: 78 RPNKTNNTNLISGNIEILCRELKILNSSIT-LPFQIDEKNILEVTNLKYRVLYLRY---K 133
T +G + I C EL++L ++ LP D+ + L+ ++YR YL
Sbjct: 123 ARGTLFKTQ--TGELSIHCTELRLLTKALRPLP---DKFHGLQDQEVRYRQRYLDLIAND 177
Query: 134 HMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEF-FALP 192
++ +R K+ +R+F+ ++ F+E+ETP++ + P GA + N + L
Sbjct: 178 KSRQTFVVRSKILAAIRQFMVARGFMEVETPMM-QVIPGGASARPFITHHNALDLDMYLR 236
Query: 193 QSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEM 252
+P+L+ + L+V F+R ++I + FR+E + PEFT ++ ++ + ++ L E +
Sbjct: 237 IAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESL 296
Query: 253 IRVIFYKTLN----------IKLPNPFPVIEWSTAIKLY 281
R + + L PF + AIK Y
Sbjct: 297 FRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKY 335
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 472 NPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFL-----LN 526
NPE + ++ I G EIG G ++DAE Q + F+ ++ K +
Sbjct: 406 NPE--ITDRFEFFIGGREIGNGFSELNDAEDQAERFQE-QVNAKAAGDDEAMFYDEDYVT 462
Query: 527 SLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
+L+YG PP G+ G+DR+I + T S +IRDVI FP
Sbjct: 463 ALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 114/267 (42%), Gaps = 30/267 (11%)
Query: 15 DQVISLCGWVHRKRNHGGII-FIDLRDYTGLVQIVFDPN-----DIKIYKIAKIIRNEFC 68
D+ + VH R G + F+ LR L+Q + N + K A + E
Sbjct: 36 DKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESI 95
Query: 69 LQIIG--KVCSRPNKTNNTNLISGNIEI-LCRELKILNSSITLPFQIDEKNILEV----- 120
+ + G K P K+ N+EI + + I + LP +++ + E
Sbjct: 96 VLVRGIVKKVDEPIKSATVQ----NLEIHITKIYTISETPEALPILLEDASRSEAEAEAA 151
Query: 121 --------TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPE 172
T L YRV+ LR Q R++ V R++L +KKF E+ TP L + E
Sbjct: 152 GLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSE 211
Query: 173 GARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFT 231
G + + A QSPQ KQ L+VA+F+R Y+I FR E+ + R EFT
Sbjct: 212 GGSSVFEVTYFKGKAYLA--QSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFT 269
Query: 232 QIDCETSFMNE-EEIRNLFEEMIRVIF 257
+D E +F E+ + E+ IF
Sbjct: 270 GLDMEMAFEEHYHEVLDTLSELFVFIF 296
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 471 TNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKV--LNIDNKIVKTQFGFLLNSL 528
NP+ +S +YD + G EI G+ RIHD + ++ K L+ ++ +K +
Sbjct: 392 ANPK--YSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKD----YCDGF 445
Query: 529 KYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPK 563
YG PPH G GL+R++ K+IR FP+
Sbjct: 446 SYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPR 480
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 114/267 (42%), Gaps = 30/267 (11%)
Query: 15 DQVISLCGWVHRKRNHGGII-FIDLRDYTGLVQIVFDPN-----DIKIYKIAKIIRNEFC 68
D+ + VH R G + F+ LR L+Q + N + K A + E
Sbjct: 39 DKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESI 98
Query: 69 LQIIG--KVCSRPNKTNNTNLISGNIEI-LCRELKILNSSITLPFQIDEKNILEV----- 120
+ + G K P K+ N+EI + + I + LP +++ + E
Sbjct: 99 VLVRGIVKKVDEPIKSATVQ----NLEIHITKIYTISETPEALPILLEDASRSEAEAEAA 154
Query: 121 --------TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPE 172
T L YRV+ LR Q R++ V R++L +KKF E+ TP L + E
Sbjct: 155 GLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSE 214
Query: 173 GARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFT 231
G + + A QSPQ KQ L+VA+F+R Y+I FR E+ + R EFT
Sbjct: 215 GGSSVFEVTYFKGKAYLA--QSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFT 272
Query: 232 QIDCETSFMNE-EEIRNLFEEMIRVIF 257
+D E +F E+ + E+ IF
Sbjct: 273 GLDMEMAFEEHYHEVLDTLSELFVFIF 299
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 471 TNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKV--LNIDNKIVKTQFGFLLNSL 528
NP+ +S +YD + G EI G+ RIHD + ++ K L+ ++ +K +
Sbjct: 395 ANPK--YSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKD----YCDGF 448
Query: 529 KYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPK 563
YG PPH G GL+R++ K+IR FP+
Sbjct: 449 SYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPR 483
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 21/252 (8%)
Query: 11 EKLLDQVISLCGWVHRKRNHGG-IIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCL 69
+ L D + + G +H KR GG +IF DLR +Q++ + + K + I N+
Sbjct: 51 DHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRR 110
Query: 70 QIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT----LPFQIDEKNILEVTNLKY 125
I V P KT G + I+ E+ +L+ + L F + +K +Y
Sbjct: 111 GDIIGVQGNPGKTK-----KGELSIIPYEITLLSPCLHMLPHLHFGLKDKET------RY 159
Query: 126 RVLYLRY---KHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSR 182
R YL +++ +R K+ +R FLD F+EIETP+++ P GA +
Sbjct: 160 RQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMN-IIPGGAVAKPFITY 218
Query: 183 INPGEF-FALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN 241
N + + +P+L+ ++L+V DR Y+I + FR+E + PEFT + ++ +
Sbjct: 219 HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYAD 278
Query: 242 EEEIRNLFEEMI 253
++ + E+M+
Sbjct: 279 YHDLMEITEKMV 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 477 FSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFL----LNSLKYGA 532
++ ++L + EI ++D Q+++F+ + F+ +L+YG
Sbjct: 414 LTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGL 473
Query: 533 PPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
PP G G+DR+ +T S +I++V+ FP
Sbjct: 474 PPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 21/252 (8%)
Query: 11 EKLLDQVISLCGWVHRKRNHGG-IIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCL 69
+ L D + + G +H KR GG +IF DLR +Q++ + + K + I N+
Sbjct: 51 DHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRR 110
Query: 70 QIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT----LPFQIDEKNILEVTNLKY 125
I V P KT G + I+ E+ +L+ + L F + +K +Y
Sbjct: 111 GDIIGVQGNPGKTK-----KGELSIIPYEITLLSPCLHMLPHLHFGLKDKET------RY 159
Query: 126 RVLYLRY---KHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSR 182
R YL +++ +R K+ +R FLD F+EIETP+++ P GA +
Sbjct: 160 RQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMN-IIPGGAVAKPFITY 218
Query: 183 INPGEF-FALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN 241
N + + +P+L+ ++L+V DR Y+I + FR+E + PEFT + ++ +
Sbjct: 219 HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYAD 278
Query: 242 EEEIRNLFEEMI 253
++ + E+M+
Sbjct: 279 YHDLMEITEKMV 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 477 FSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFL----LNSLKYGA 532
++ ++L + EI ++D Q+++F+ + F+ +L+YG
Sbjct: 414 LTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGL 473
Query: 533 PPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
PP G G+DR+ +T S +I++V+ FP
Sbjct: 474 PPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 123/276 (44%), Gaps = 26/276 (9%)
Query: 2 RTHYC-------GNITEKLLDQV---ISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDP 51
RTH G+++++ L++ +++ G + KR G F ++D TG +QI
Sbjct: 33 RTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQ 92
Query: 52 NDI--KIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLP 109
+D+ + Y++ KI + + G + K ++ + E L + L+ LP
Sbjct: 93 DDVGEQQYELFKISDLGDIVGVRGTMFK--TKVGELSIKVSSYEFLTKALR------PLP 144
Query: 110 FQIDEKNILEVTNLKYRVLYLRY---KHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPIL 166
++ + L+ +YR YL +K R + +R++LDS ++E+ETP++
Sbjct: 145 ---EKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMM 201
Query: 167 SKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDR 226
A + + + +L + L+V ++ Y+I + FR+E + +
Sbjct: 202 HAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRH 261
Query: 227 QPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLN 262
PEFT ++ ++ + +I L E +I I + L
Sbjct: 262 NPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLG 297
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 477 FSKAYDLIINGWEIGGGSIRIHDAEIQKKIF----KVLNIDNKIVKTQFGFLLNSLKYGA 532
F+ ++L I G E ++D Q++ F K N L +L+YG
Sbjct: 399 FTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGM 458
Query: 533 PPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQ 565
PP GG+ G+DRL+ ++T S SIRDV+ FP+ +
Sbjct: 459 PPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQMR 491
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 474 EKIFSKAYDLIING-WEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGA 532
+ +++ DL++ G EI GGS+RI + K FK + ID K + + L+ YG
Sbjct: 342 DNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPK----PYYWYLDQRLYGT 397
Query: 533 PPHGGIAFGLDRLITIMTGSKSIRDVIAFPK 563
PHGG GL+R I +T + IRDV +P+
Sbjct: 398 CPHGGYGLGLERFICWLTNTNHIRDVCLYPR 428
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 29/251 (11%)
Query: 15 DQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIG 73
++ + + GW+HR R G ++F LRD TG +Q++ + Y A + E ++I G
Sbjct: 11 NERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYD-ALTVNTECTVEIYG 69
Query: 74 KVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTN-----LKYRVL 128
+ P N E++ KI+ ++ P ID N+L L R L
Sbjct: 70 AIKEVPEGKEAPN----GHELIADFWKIIGNAP--PGGID--NVLNEEASVDKMLDNRHL 121
Query: 129 YLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGAR-----DYLVPSRI 183
+R ++ LRLR T +R+ + ++E+ P L ++ EG DY
Sbjct: 122 VIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYF----- 176
Query: 184 NPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCETSFMNE 242
GE L QS QL+ + + + I + +R E R+ R E+ ++ E F+
Sbjct: 177 --GEQSFLTQSSQLYLETC-IPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITL 233
Query: 243 EEIRNLFEEMI 253
+++ EE++
Sbjct: 234 DDLMEKIEELV 244
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 477 FSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHG 536
+S +YD+ + G EI G+ RIHD E K +D +K + S ++G+ PH
Sbjct: 459 YSNSYDVFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKD----YIESFRFGSWPHA 514
Query: 537 GIAFGLDRLITIMTGSKSIRDVIAFPK 563
G GL+R+ + G +IR V FP+
Sbjct: 515 GCGIGLERITMLYLGIPNIRKVTLFPR 541
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Query: 121 TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVP 180
T L R+L LR R++ R+FL S+KF+EI TP L + EG +
Sbjct: 226 TRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV 285
Query: 181 SRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCETSF 239
+ + A QSPQL+KQ+ ++ +F + +++ FR E+ + R EF +D E
Sbjct: 286 KYFDRKAYLA--QSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEI 343
Query: 240 M-NEEEIRNLFEEMIRVIFYKTLNIKLPNPFP 270
+ N E ++ E++ IF ++P FP
Sbjct: 344 VENYHECIDVMEKLFTFIF-----DEIPKRFP 370
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 474 EKIFSKAYDLIING-WEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGA 532
+ +++ DL++ G EI GGS+RI + K FK + ID K + + L+ YG
Sbjct: 344 DNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPK----PYYWYLDQRLYGT 399
Query: 533 PPHGGIAFGLDRLITIMTGSKSIRDVIAFPK 563
PHGG GL+R I +T + IRDV +P+
Sbjct: 400 CPHGGYGLGLERFICWLTNTNHIRDVCLYPR 430
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 29/251 (11%)
Query: 15 DQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIG 73
++ + + GW+HR R G ++F LRD TG +Q++ + Y A + E ++I G
Sbjct: 13 NERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYD-ALTVNTECTVEIYG 71
Query: 74 KVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTN-----LKYRVL 128
+ P N E++ KI+ ++ P ID N+L L R L
Sbjct: 72 AIKEVPEGKEAPN----GHELIADFWKIIGNAP--PGGID--NVLNEEASVDKMLDNRHL 123
Query: 129 YLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGAR-----DYLVPSRI 183
+R ++ LRLR T +R+ + ++E+ P L ++ EG DY
Sbjct: 124 VIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYF----- 178
Query: 184 NPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCETSFMNE 242
GE L QS QL+ + + + I + +R E R+ R E+ ++ E F+
Sbjct: 179 --GEQSFLTQSSQLYLETC-IPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITL 235
Query: 243 EEIRNLFEEMI 253
+++ EE++
Sbjct: 236 DDLMEKIEELV 246
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|B Chain B, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|C Chain C, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|D Chain D, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
Length = 345
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSR---INPGEF----FA 190
NL R + E+R+F + +E+ETP +S++T +LVP + PG
Sbjct: 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDI--HLVPFETRFVGPGHSQGMNLW 92
Query: 191 LPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQID 234
L SP+ + L+VA +Q+ + FR+E++ PEFT ++
Sbjct: 93 LMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLE 136
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 470 ITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGF------ 523
I+ + ++ +++ G E+ G + DA Q++ F+ DN+ + G
Sbjct: 245 ISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQ---DNR-KRAARGLPQHPID 300
Query: 524 --LLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAF 561
L+ +LK G P G+A G+DRL+ + G++++ +VIAF
Sbjct: 301 QNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAF 340
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|C Chain C, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|E Chain E, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|G Chain G, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 328
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSR---INPGEF----FA 190
NL R + E+R+F + +E+ETP +S++T +LVP + PG
Sbjct: 18 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDI--HLVPFETRFVGPGHSQGMNLW 75
Query: 191 LPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQID 234
L SP+ + L+VA +Q+ + FR+E++ PEFT ++
Sbjct: 76 LMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLE 119
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 470 ITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGF------ 523
I+ + ++ +++ G E+ G + DA Q++ F+ DN+ + G
Sbjct: 228 ISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQ---DNR-KRAARGLPQHPID 283
Query: 524 --LLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAF 561
L+ +LK G P G+A G+DRL+ + G++++ +VIAF
Sbjct: 284 QNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAF 323
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSR-INPGEF----FALP 192
NL R + E+R+F + +E+ETP +S++T + +R + PG L
Sbjct: 16 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGINLYLM 75
Query: 193 QSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQID 234
SP+ + L+ A +Q+ + FR+E++ PEFT ++
Sbjct: 76 TSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRHHNPEFTMLE 117
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 470 ITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGF------ 523
I+ + ++ +++ G E+ G + DA Q++ F+ DN+ + G
Sbjct: 226 ISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQ---DNR-KRAARGLPQQPID 281
Query: 524 --LLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAF 561
LL++L G P G+A G+DRL+ + G++S+ DVIAF
Sbjct: 282 QNLLDALAAGLPDCSGVALGVDRLVMLALGAESLADVIAF 321
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 163 TPILSKSTPEGARDYLVPSRINP-GEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDED 221
+PI P+ A + + P+ ++ G L S L KQL + ++ + ++ R E
Sbjct: 43 SPITDPLWPDPAGEGIRPAEVDVYGVRMRLTHSMILHKQLAIAMGLEKIFVLSPNIRLES 102
Query: 222 LRSD---RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKT---LNIKLPNP--FPVIE 273
R D EFTQ+D E +++ L EE+I +F K + P F V +
Sbjct: 103 RRKDDGRHSYEFTQLDFEIEGAKMKDVMRLIEELIYGLFRKAEEWTGREFPRARHFKVYD 162
Query: 274 WSTAIKLYGSDK 285
+ ++ +GSD+
Sbjct: 163 YKDILEEFGSDE 174
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 35/158 (22%)
Query: 418 SDFGKRNNILNNKWHPLWVINFPMFKYDKINNN-WIARHHPFTAPKDGYEDFIITNPEKI 476
+FG P W++N P YD+ N W
Sbjct: 168 EEFGSDEKASMEMEEPFWIVNIPREFYDREENGVW------------------------- 202
Query: 477 FSKAYDLIIN-GW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGA-P 533
K YDLI+ G+ E+ G R + E +K + K+ K + F L + G
Sbjct: 203 --KNYDLILPYGYGEVSSGGER--EWEYEKIVAKIRAAGLK--EDSFRPYLEIARAGKLK 256
Query: 534 PHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLL 571
P G G++RL+ + G+K I +V FP+ ++
Sbjct: 257 PSAGAGIGVERLVRFIVGAKHIAEVQPFPRVPGIPAVI 294
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 163 TPILSKSTPEGARDYLVPSRIN-PGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDED 221
+PI P+ A + + P+ + G L S L KQL + + + ++ R E
Sbjct: 43 SPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLES 102
Query: 222 LRSD---RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKT---LNIKLPNP--FPVIE 273
+ D EFTQ+D E E+I L E ++ +F K + P F V E
Sbjct: 103 RQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFE 162
Query: 274 WSTAIKLYGSDK 285
+S ++ +GSD+
Sbjct: 163 YSEVLEEFGSDE 174
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 37/159 (23%)
Query: 418 SDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIF 477
+FG P W+IN P YD+ + F
Sbjct: 168 EEFGSDEKASQEMEEPFWIINIPREFYDREVDG--------------------------F 201
Query: 478 SKAYDLIIN-GW-EIGGGSIRIHDAE-IQKKIFKV-LNIDNKIVKTQFGFLLNSLKYGA- 532
+ YDLI+ G+ E+ G R + E I KI K LN D+ F L K G
Sbjct: 202 WRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDS------FRPYLEIAKAGKL 255
Query: 533 PPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLL 571
P G G++RL+ + G+K I +V FP+ ++
Sbjct: 256 KPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIPAVI 294
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 455 HHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIG--GGSIRIHDAEIQKKIFKVLNI 512
H P P+D YE I+ + E++ YD+ WE G GG +R H + V ++
Sbjct: 52 HEP-ENPEDTYERRIMVDKEEVTLVVYDI----WEQGDAGGWLRDHCLQTGDAFLIVFSV 106
Query: 513 DNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554
++ ++ L L+ G P H L I+ G+KS
Sbjct: 107 TDRRSFSKVPETLLRLRAGRPHHD--------LPVILVGNKS 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,445,703
Number of Sequences: 62578
Number of extensions: 818477
Number of successful extensions: 2164
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2054
Number of HSP's gapped (non-prelim): 52
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)