Query psy3762
Match_columns 595
No_of_seqs 211 out of 1373
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 16:37:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0173 AspS Aspartyl-tRNA syn 100.0 4E-156 9E-161 1232.9 53.8 580 1-592 1-584 (585)
2 TIGR00459 aspS_bact aspartyl-t 100.0 1E-138 3E-143 1146.0 57.8 580 1-594 1-583 (583)
3 PLN02903 aminoacyl-tRNA ligase 100.0 7E-139 2E-143 1150.6 56.1 575 1-591 58-648 (652)
4 PRK00476 aspS aspartyl-tRNA sy 100.0 1E-137 3E-142 1147.1 57.4 579 1-592 3-586 (588)
5 PRK12820 bifunctional aspartyl 100.0 3E-137 6E-142 1148.3 56.9 577 2-591 5-601 (706)
6 KOG2411|consensus 100.0 6E-120 1E-124 935.8 40.0 580 1-593 33-626 (628)
7 COG0017 AsnS Aspartyl/asparagi 100.0 2.2E-94 4.7E-99 758.0 38.3 408 1-567 2-432 (435)
8 PRK05159 aspC aspartyl-tRNA sy 100.0 1.1E-90 2.5E-95 753.6 42.3 412 1-566 2-433 (437)
9 TIGR00458 aspS_arch aspartyl-t 100.0 3.5E-90 7.5E-95 746.8 42.3 405 4-567 1-425 (428)
10 PRK00484 lysS lysyl-tRNA synth 100.0 5.7E-90 1.2E-94 754.7 42.9 426 2-566 31-489 (491)
11 PTZ00401 aspartyl-tRNA synthet 100.0 9.2E-89 2E-93 747.8 43.8 450 4-567 66-547 (550)
12 PTZ00425 asparagine-tRNA ligas 100.0 3.7E-88 7.9E-93 741.0 42.7 410 12-569 78-584 (586)
13 PRK12445 lysyl-tRNA synthetase 100.0 1.6E-87 3.4E-92 735.3 44.2 428 2-566 42-503 (505)
14 PLN02850 aspartate-tRNA ligase 100.0 1.1E-87 2.4E-92 739.4 43.1 430 4-567 70-527 (530)
15 TIGR00499 lysS_bact lysyl-tRNA 100.0 2.6E-87 5.7E-92 733.7 44.2 429 2-566 30-494 (496)
16 PLN02603 asparaginyl-tRNA synt 100.0 1.1E-87 2.3E-92 739.4 39.1 413 2-569 88-563 (565)
17 PLN02502 lysyl-tRNA synthetase 100.0 8.4E-87 1.8E-91 732.7 44.2 432 2-565 86-550 (553)
18 TIGR00457 asnS asparaginyl-tRN 100.0 1.1E-86 2.3E-91 723.0 41.7 401 12-566 13-449 (453)
19 PRK03932 asnC asparaginyl-tRNA 100.0 1E-85 2.2E-90 716.1 41.2 412 1-566 1-446 (450)
20 PLN02221 asparaginyl-tRNA synt 100.0 8.7E-86 1.9E-90 724.0 39.9 409 11-569 46-570 (572)
21 PTZ00385 lysyl-tRNA synthetase 100.0 2.3E-84 5E-89 716.6 43.1 438 2-567 85-565 (659)
22 PTZ00417 lysine-tRNA ligase; P 100.0 1.4E-83 3E-88 709.3 43.9 431 2-566 110-583 (585)
23 PLN02532 asparagine-tRNA synth 100.0 2.1E-84 4.6E-89 714.2 35.2 388 27-566 129-629 (633)
24 PRK02983 lysS lysyl-tRNA synth 100.0 9.9E-83 2.1E-87 748.2 44.7 428 2-566 638-1092(1094)
25 KOG0556|consensus 100.0 8.5E-83 1.8E-87 646.4 31.9 432 4-567 71-530 (533)
26 COG1190 LysU Lysyl-tRNA synthe 100.0 2.4E-82 5.2E-87 669.0 34.7 431 2-566 38-500 (502)
27 KOG0554|consensus 100.0 5.9E-78 1.3E-82 612.1 25.8 393 11-566 16-442 (446)
28 KOG1885|consensus 100.0 9.3E-76 2E-80 604.6 24.3 417 15-565 104-555 (560)
29 PF00152 tRNA-synt_2: tRNA syn 100.0 1.4E-73 3.1E-78 602.6 22.9 322 118-566 1-335 (335)
30 KOG0555|consensus 100.0 2.4E-71 5.3E-76 560.7 25.3 405 12-569 120-543 (545)
31 cd00777 AspRS_core Asp tRNA sy 100.0 3.8E-68 8.2E-73 545.0 24.5 279 139-566 1-280 (280)
32 cd00776 AsxRS_core Asx tRNA sy 100.0 3.4E-67 7.3E-72 549.2 26.1 301 117-566 2-322 (322)
33 PRK06462 asparagine synthetase 100.0 7.6E-66 1.7E-70 541.0 28.5 302 117-567 8-332 (335)
34 cd00775 LysRS_core Lys_tRNA sy 100.0 1.2E-64 2.6E-69 531.1 30.7 311 132-565 1-328 (329)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 4.6E-63 1E-67 504.6 25.9 257 139-565 1-268 (269)
36 TIGR00462 genX lysyl-tRNA synt 100.0 8.6E-63 1.9E-67 511.7 27.7 292 139-561 1-304 (304)
37 PRK09350 poxB regulator PoxA; 100.0 3.4E-58 7.4E-63 477.7 28.6 291 136-558 2-306 (306)
38 COG2269 Truncated, possibly in 100.0 2.8E-52 6E-57 409.6 19.9 295 137-565 14-321 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.9 1.4E-25 3.1E-30 206.5 14.3 133 2-134 1-134 (135)
40 cd04322 LysRS_N LysRS_N: N-ter 99.8 1.1E-20 2.4E-25 167.3 13.6 104 17-130 1-108 (108)
41 cd04316 ND_PkAspRS_like_N ND_P 99.8 4.5E-20 9.8E-25 163.4 14.7 103 4-113 1-106 (108)
42 cd04319 PhAsnRS_like_N PhAsnRS 99.8 1.8E-19 4E-24 158.1 14.3 102 17-128 1-103 (103)
43 PRK00488 pheS phenylalanyl-tRN 99.8 4.9E-19 1.1E-23 183.7 13.7 115 143-257 111-237 (339)
44 COG0016 PheS Phenylalanyl-tRNA 99.8 1.2E-18 2.5E-23 179.9 13.0 115 143-257 114-244 (335)
45 cd04320 AspRS_cyto_N AspRS_cyt 99.8 1.4E-17 3.1E-22 145.9 13.9 95 17-113 1-101 (102)
46 PF01409 tRNA-synt_2d: tRNA sy 99.7 1.3E-17 2.9E-22 168.0 10.0 115 143-257 20-154 (247)
47 cd04323 AsnRS_cyto_like_N AsnR 99.7 7.5E-16 1.6E-20 130.1 12.7 84 17-104 1-84 (84)
48 PLN02853 Probable phenylalanyl 99.7 7.9E-16 1.7E-20 166.0 14.5 112 143-254 224-391 (492)
49 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.6 1.4E-15 3.1E-20 128.6 12.0 84 17-104 1-85 (85)
50 cd04321 ScAspRS_mt_like_N ScAs 99.6 2.4E-15 5.2E-20 127.6 12.8 84 17-104 1-86 (86)
51 PRK09537 pylS pyrolysyl-tRNA s 99.6 1.9E-15 4.1E-20 161.1 14.2 129 119-252 182-329 (417)
52 PTZ00326 phenylalanyl-tRNA syn 99.6 2.2E-15 4.9E-20 163.4 14.3 99 143-241 232-391 (494)
53 cd04318 EcAsnRS_like_N EcAsnRS 99.6 6.5E-15 1.4E-19 123.8 11.7 79 17-103 1-81 (82)
54 PLN02788 phenylalanine-tRNA sy 99.5 1E-13 2.2E-18 147.4 14.8 95 143-239 71-179 (402)
55 TIGR02367 PylS pyrrolysyl-tRNA 99.5 1.1E-13 2.4E-18 147.2 13.9 106 141-247 241-360 (453)
56 TIGR00469 pheS_mito phenylalan 99.4 1.2E-12 2.7E-17 140.2 15.0 96 143-240 45-166 (460)
57 cd00768 class_II_aaRS-like_cor 99.4 8E-13 1.7E-17 129.4 11.2 101 142-242 2-112 (211)
58 PTZ00213 asparagine synthetase 99.4 3.1E-11 6.6E-16 122.8 19.5 82 478-565 250-341 (348)
59 PRK05425 asparagine synthetase 99.4 2.8E-11 6.2E-16 122.8 18.3 68 487-560 239-308 (327)
60 cd00645 AsnA Asparagine synthe 99.4 2.9E-11 6.3E-16 121.6 17.5 68 487-560 229-298 (309)
61 TIGR00468 pheS phenylalanyl-tR 99.4 8.1E-12 1.8E-16 129.7 14.0 112 143-254 75-199 (294)
62 PRK04172 pheS phenylalanyl-tRN 99.3 6E-11 1.3E-15 131.6 16.4 116 138-253 231-398 (489)
63 PRK04028 glutamyl-tRNA(Gln) am 99.3 3.3E-11 7.2E-16 134.8 13.1 135 270-427 262-403 (630)
64 TIGR00669 asnA aspartate--ammo 99.2 1E-09 2.3E-14 111.3 20.3 77 478-560 231-315 (330)
65 cd00773 HisRS-like_core Class 99.1 1.2E-08 2.6E-13 104.3 20.1 101 139-241 2-116 (261)
66 PF01336 tRNA_anti-codon: OB-f 99.0 8.7E-09 1.9E-13 84.1 12.6 74 18-102 1-75 (75)
67 PF02938 GAD: GAD domain; Int 98.9 5E-10 1.1E-14 96.8 3.3 87 317-408 8-95 (95)
68 TIGR00470 sepS O-phosphoseryl- 98.9 4.4E-09 9.6E-14 112.2 10.7 69 188-256 184-259 (533)
69 TIGR00443 hisZ_biosyn_reg ATP 98.8 2.7E-07 5.8E-12 97.0 20.9 120 137-256 6-140 (314)
70 PLN02972 Histidyl-tRNA synthet 98.8 3E-07 6.5E-12 105.1 21.2 123 133-256 335-471 (763)
71 PRK12421 ATP phosphoribosyltra 98.8 7.4E-07 1.6E-11 96.5 22.9 120 137-256 19-154 (392)
72 PRK12420 histidyl-tRNA synthet 98.8 3E-07 6.5E-12 100.6 18.6 120 137-256 16-152 (423)
73 PLN02530 histidine-tRNA ligase 98.7 5.8E-07 1.2E-11 100.0 20.4 120 136-256 81-217 (487)
74 TIGR00442 hisS histidyl-tRNA s 98.4 1E-06 2.2E-11 95.6 10.4 117 137-254 12-148 (397)
75 COG0124 HisS Histidyl-tRNA syn 98.4 1.3E-06 2.8E-11 94.7 10.3 119 138-256 17-154 (429)
76 cd00670 Gly_His_Pro_Ser_Thr_tR 98.4 1.1E-06 2.5E-11 87.9 8.8 102 140-241 3-125 (235)
77 PRK00037 hisS histidyl-tRNA sy 98.4 1.7E-06 3.7E-11 94.3 10.4 118 137-255 16-150 (412)
78 cd00496 PheRS_alpha_core Pheny 98.3 2.1E-06 4.6E-11 85.5 9.8 110 144-256 5-131 (218)
79 PF00587 tRNA-synt_2b: tRNA sy 98.3 7.7E-07 1.7E-11 85.3 5.2 116 141-257 1-135 (173)
80 CHL00201 syh histidine-tRNA sy 98.3 3E-06 6.6E-11 92.9 10.3 119 137-256 16-155 (430)
81 PRK12292 hisZ ATP phosphoribos 98.3 3.1E-06 6.7E-11 91.7 9.8 120 137-256 15-151 (391)
82 TIGR00134 gatE_arch glutamyl-t 98.2 5E-06 1.1E-10 93.7 10.3 120 271-412 260-386 (620)
83 cd00779 ProRS_core_prok Prolyl 98.2 5.4E-06 1.2E-10 84.6 9.1 115 139-255 31-164 (255)
84 PF13393 tRNA-synt_His: Histid 98.1 9E-06 2E-10 85.2 9.5 117 137-254 8-139 (311)
85 cd00778 ProRS_core_arch_euk Pr 98.1 5.3E-06 1.2E-10 85.0 7.0 119 138-256 31-171 (261)
86 cd00772 ProRS_core Prolyl-tRNA 98.1 2.2E-05 4.7E-10 80.6 11.3 116 139-256 32-171 (264)
87 cd00774 GlyRS-like_core Glycyl 98.1 3.7E-06 8E-11 85.8 5.5 96 139-239 32-142 (254)
88 PRK12293 hisZ ATP phosphoribos 98.0 2.5E-05 5.3E-10 80.9 10.3 112 137-256 17-139 (281)
89 TIGR00409 proS_fam_II prolyl-t 98.0 2.8E-05 6.1E-10 88.0 11.5 121 138-260 46-188 (568)
90 PRK09194 prolyl-tRNA synthetas 98.0 3.2E-05 6.9E-10 87.8 11.4 121 138-260 46-188 (565)
91 cd00771 ThrRS_core Threonyl-tR 97.9 7.1E-05 1.5E-09 78.2 10.9 112 139-254 30-161 (298)
92 PRK14799 thrS threonyl-tRNA sy 97.9 4.2E-05 9.1E-10 85.9 9.5 121 137-258 166-303 (545)
93 TIGR00414 serS seryl-tRNA synt 97.8 7.1E-05 1.5E-09 81.7 10.2 119 137-257 171-308 (418)
94 PRK12444 threonyl-tRNA synthet 97.8 6.2E-05 1.3E-09 86.7 10.0 119 138-257 273-408 (639)
95 PRK12295 hisZ ATP phosphoribos 97.8 6.9E-05 1.5E-09 80.6 9.3 111 143-256 8-133 (373)
96 PLN02908 threonyl-tRNA synthet 97.8 7.8E-05 1.7E-09 86.4 10.3 121 136-257 318-455 (686)
97 COG2502 AsnA Asparagine synthe 97.8 0.0014 3E-08 65.1 16.9 69 487-560 246-315 (330)
98 PRK12305 thrS threonyl-tRNA sy 97.8 0.00013 2.8E-09 83.2 10.9 119 136-257 203-341 (575)
99 KOG2784|consensus 97.7 3.8E-05 8.2E-10 79.4 4.9 49 208-256 334-384 (483)
100 cd00770 SerRS_core Seryl-tRNA 97.7 0.00012 2.6E-09 76.4 8.0 119 137-257 50-187 (297)
101 PRK00413 thrS threonyl-tRNA sy 97.7 0.00022 4.8E-09 82.3 10.9 110 135-245 266-393 (638)
102 TIGR00418 thrS threonyl-tRNA s 97.6 0.00027 5.9E-09 80.3 11.3 118 137-255 198-333 (563)
103 PRK05431 seryl-tRNA synthetase 97.6 0.0002 4.3E-09 78.4 9.4 119 137-257 168-306 (425)
104 PRK12325 prolyl-tRNA synthetas 97.6 0.00025 5.5E-09 78.1 10.0 116 138-255 46-180 (439)
105 PRK08661 prolyl-tRNA synthetas 97.6 0.0002 4.4E-09 79.6 9.3 116 138-255 43-181 (477)
106 TIGR00408 proS_fam_I prolyl-tR 97.6 0.00021 4.6E-09 79.3 8.5 118 139-256 38-177 (472)
107 KOG1936|consensus 97.5 0.00028 6E-09 74.8 8.0 118 138-256 73-206 (518)
108 PRK12294 hisZ ATP phosphoribos 97.4 0.00077 1.7E-08 69.4 10.2 101 136-243 4-113 (272)
109 PLN02837 threonine-tRNA ligase 97.3 0.001 2.2E-08 76.3 10.6 119 137-257 245-382 (614)
110 PRK03991 threonyl-tRNA synthet 97.3 0.00097 2.1E-08 76.1 10.1 120 137-259 225-365 (613)
111 PLN02678 seryl-tRNA synthetase 97.0 0.0013 2.8E-08 72.1 7.2 119 137-256 172-312 (448)
112 cd04489 ExoVII_LU_OBF ExoVII_L 96.9 0.012 2.5E-07 48.3 10.4 73 18-100 2-75 (78)
113 PLN02320 seryl-tRNA synthetase 96.8 0.0031 6.7E-08 69.8 7.4 119 138-258 232-370 (502)
114 cd04487 RecJ_OBF2_like RecJ_OB 96.6 0.014 3.1E-07 47.8 8.5 73 18-102 1-73 (73)
115 PRK04173 glycyl-tRNA synthetas 96.6 0.0036 7.9E-08 69.2 6.6 51 207-258 186-239 (456)
116 cd04483 hOBFC1_like hOBFC1_lik 96.5 0.019 4E-07 49.4 9.0 71 20-100 2-90 (92)
117 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.5 0.024 5.3E-07 48.5 9.7 78 18-105 2-80 (95)
118 COG1107 Archaea-specific RecJ- 96.4 0.0037 8E-08 68.7 5.2 86 5-103 204-289 (715)
119 PF13742 tRNA_anti_2: OB-fold 96.4 0.025 5.5E-07 49.2 9.3 74 16-100 22-98 (99)
120 COG0442 ProS Prolyl-tRNA synth 96.4 0.012 2.6E-07 65.2 9.0 116 138-255 46-180 (500)
121 KOG1035|consensus 96.4 0.0067 1.5E-07 72.1 7.1 144 136-288 929-1084(1351)
122 KOG2783|consensus 96.4 0.0024 5.2E-08 67.0 3.0 39 202-240 146-184 (436)
123 COG3705 HisZ ATP phosphoribosy 96.3 0.0098 2.1E-07 63.8 7.7 116 139-256 17-148 (390)
124 PF04076 BOF: Bacterial OB fol 96.1 0.026 5.5E-07 49.5 7.9 81 3-100 22-102 (103)
125 TIGR00415 serS_MJ seryl-tRNA s 96.1 0.024 5.2E-07 62.6 9.2 119 138-257 222-388 (520)
126 COG0172 SerS Seryl-tRNA synthe 96.0 0.029 6.2E-07 60.9 9.4 132 139-274 174-324 (429)
127 KOG2324|consensus 96.0 0.025 5.4E-07 59.1 8.3 119 139-260 52-190 (457)
128 PRK07373 DNA polymerase III su 96.0 0.04 8.6E-07 60.8 10.4 87 4-103 269-361 (449)
129 cd03524 RPA2_OBF_family RPA2_O 95.9 0.1 2.2E-06 41.1 9.8 69 19-99 1-73 (75)
130 cd04482 RPA2_OBF_like RPA2_OBF 95.8 0.051 1.1E-06 46.5 8.3 74 19-105 2-77 (91)
131 PRK00960 seryl-tRNA synthetase 95.7 0.0099 2.1E-07 66.2 4.5 119 137-256 221-387 (517)
132 cd04485 DnaE_OBF DnaE_OBF: A s 95.7 0.087 1.9E-06 43.0 8.9 71 20-103 2-78 (84)
133 COG4085 Predicted RNA-binding 95.4 0.082 1.8E-06 50.7 8.7 77 12-98 48-129 (204)
134 TIGR00156 conserved hypothetic 95.4 0.094 2E-06 47.5 8.5 79 5-100 47-125 (126)
135 PF10451 Stn1: Telomere regula 95.1 0.082 1.8E-06 53.9 8.3 75 16-103 67-148 (256)
136 cd04492 YhaM_OBF_like YhaM_OBF 95.1 0.41 8.9E-06 39.2 11.1 62 30-104 16-78 (83)
137 PRK05672 dnaE2 error-prone DNA 95.0 0.11 2.3E-06 63.1 10.2 87 5-104 943-1033(1046)
138 cd04490 PolII_SU_OBF PolII_SU_ 95.0 0.31 6.7E-06 40.6 10.1 59 18-77 2-62 (79)
139 PRK10053 hypothetical protein; 94.9 0.14 2.9E-06 46.8 8.2 79 5-100 51-129 (130)
140 PRK07374 dnaE DNA polymerase I 94.8 0.13 2.8E-06 62.9 10.3 87 4-103 989-1081(1170)
141 cd04474 RPA1_DBD_A RPA1_DBD_A: 94.7 0.26 5.6E-06 43.2 9.4 87 6-98 2-98 (104)
142 COG3111 Periplasmic protein wi 94.7 0.15 3.3E-06 45.5 7.8 81 5-102 47-127 (128)
143 PRK06826 dnaE DNA polymerase I 94.5 0.19 4.1E-06 61.5 10.7 80 13-104 989-1074(1151)
144 PRK05673 dnaE DNA polymerase I 94.3 0.19 4.2E-06 61.5 10.1 90 3-105 965-1060(1135)
145 PRK09616 pheT phenylalanyl-tRN 94.2 0.19 4E-06 57.2 9.2 109 143-255 362-488 (552)
146 PRK06920 dnaE DNA polymerase I 94.1 0.23 5E-06 60.5 10.1 87 4-104 933-1025(1107)
147 COG0441 ThrS Threonyl-tRNA syn 93.9 0.088 1.9E-06 59.7 5.7 121 139-260 220-357 (589)
148 COG5235 RFA2 Single-stranded D 93.8 0.41 9E-06 46.5 9.2 76 17-102 68-143 (258)
149 cd04479 RPA3 RPA3: A subfamily 92.9 0.8 1.7E-05 39.9 9.1 69 11-104 11-80 (101)
150 COG0423 GRS1 Glycyl-tRNA synth 92.8 0.2 4.3E-06 55.3 6.1 30 139-168 40-71 (558)
151 cd00769 PheRS_beta_core Phenyl 92.1 0.31 6.7E-06 47.7 6.0 108 144-256 4-137 (198)
152 PRK07279 dnaE DNA polymerase I 92.0 0.7 1.5E-05 55.9 9.9 82 5-102 877-965 (1034)
153 PF08661 Rep_fac-A_3: Replicat 91.4 0.99 2.1E-05 39.9 7.9 58 11-78 14-72 (109)
154 PRK15491 replication factor A; 88.8 2.1 4.4E-05 46.3 9.2 90 4-106 58-157 (374)
155 cd04488 RecG_wedge_OBF RecG_we 88.6 5.7 0.00012 31.3 9.7 55 20-77 2-60 (75)
156 KOG3108|consensus 88.0 2.8 6.1E-05 42.9 9.1 77 17-103 70-146 (265)
157 PRK12366 replication factor A; 87.7 2.5 5.4E-05 49.0 9.6 94 3-103 279-381 (637)
158 PRK13480 3'-5' exoribonuclease 87.7 6.4 0.00014 41.5 11.8 86 5-106 4-94 (314)
159 TIGR00617 rpa1 replication fac 86.6 4.4 9.4E-05 46.7 10.7 97 3-106 180-286 (608)
160 PF15072 DUF4539: Domain of un 86.1 4.7 0.0001 34.2 7.9 59 19-79 6-64 (86)
161 PRK07459 single-stranded DNA-b 86.0 10 0.00022 34.2 10.6 88 16-105 4-104 (121)
162 PF12869 tRNA_anti-like: tRNA_ 85.8 2.2 4.7E-05 39.2 6.5 65 12-77 64-131 (144)
163 PRK06461 single-stranded DNA-b 85.7 6.1 0.00013 36.0 9.2 83 4-104 5-100 (129)
164 cd04491 SoSSB_OBF SoSSB_OBF: A 85.7 6.1 0.00013 32.6 8.5 55 31-100 22-77 (82)
165 COG1571 Predicted DNA-binding 85.0 4.3 9.3E-05 44.1 8.9 77 15-105 266-344 (421)
166 PLN02734 glycyl-tRNA synthetas 84.6 0.5 1.1E-05 54.4 1.8 70 209-280 277-353 (684)
167 COG0124 HisS Histidyl-tRNA syn 83.6 1.3 2.8E-05 48.6 4.4 33 521-553 295-327 (429)
168 PRK07211 replication factor A; 83.5 7.5 0.00016 43.3 10.3 80 6-99 56-146 (485)
169 PRK00286 xseA exodeoxyribonucl 82.8 6.1 0.00013 43.6 9.4 79 15-103 23-102 (438)
170 PRK06863 single-stranded DNA-b 82.2 18 0.00038 34.7 11.0 87 16-105 5-111 (168)
171 TIGR00237 xseA exodeoxyribonuc 81.8 4.2 9.2E-05 44.8 7.6 76 17-102 19-95 (432)
172 COG1570 XseA Exonuclease VII, 81.6 5.2 0.00011 43.8 8.0 76 16-101 24-100 (440)
173 cd04484 polC_OBF polC_OBF: A s 81.4 23 0.00049 29.5 10.2 72 18-100 2-80 (82)
174 PRK07135 dnaE DNA polymerase I 80.9 4.5 9.7E-05 48.9 7.9 62 14-78 896-961 (973)
175 PRK10917 ATP-dependent DNA hel 80.8 13 0.00029 43.4 11.7 67 8-77 52-122 (681)
176 KOG2509|consensus 80.5 1.2 2.5E-05 48.2 2.6 119 137-256 183-328 (455)
177 PRK14894 glycyl-tRNA synthetas 80.5 1.3 2.9E-05 49.1 3.1 33 209-242 167-202 (539)
178 TIGR00471 pheT_arch phenylalan 80.1 4.6 0.0001 46.0 7.4 114 142-256 364-491 (551)
179 PRK08486 single-stranded DNA-b 78.4 19 0.00042 34.9 10.0 61 43-106 49-109 (182)
180 PF03100 CcmE: CcmE; InterPro 77.7 15 0.00033 33.5 8.7 64 6-76 39-109 (131)
181 cd00496 PheRS_alpha_core Pheny 77.6 4.4 9.5E-05 40.3 5.6 24 535-558 189-212 (218)
182 COG2511 GatE Archaeal Glu-tRNA 77.4 19 0.0004 40.3 10.5 105 294-411 282-393 (631)
183 PRK00036 primosomal replicatio 77.1 7.2 0.00016 34.4 6.0 53 43-105 47-99 (107)
184 PRK06752 single-stranded DNA-b 76.7 37 0.0008 30.0 10.7 59 44-105 48-106 (112)
185 PRK14699 replication factor A; 76.6 11 0.00024 42.2 8.9 86 5-105 59-156 (484)
186 PRK14699 replication factor A; 76.6 14 0.00029 41.5 9.6 91 4-106 277-377 (484)
187 PRK04036 DNA polymerase II sma 76.3 9.8 0.00021 42.9 8.5 71 6-76 143-215 (504)
188 COG2024 Phenylalanyl-tRNA synt 76.0 1.6 3.5E-05 46.3 2.0 35 525-559 314-349 (536)
189 PRK15491 replication factor A; 75.3 14 0.00031 39.9 9.1 89 5-106 168-267 (374)
190 PRK06751 single-stranded DNA-b 75.1 37 0.0008 32.7 10.9 59 44-105 48-106 (173)
191 PRK07275 single-stranded DNA-b 75.0 30 0.00064 32.9 10.1 86 17-105 4-106 (162)
192 PRK12292 hisZ ATP phosphoribos 74.6 3.1 6.6E-05 45.2 3.9 42 480-548 275-319 (391)
193 PRK08402 replication factor A; 74.0 21 0.00046 38.3 9.9 84 6-102 65-159 (355)
194 cd04486 YhcR_OBF_like YhcR_OBF 74.0 28 0.0006 28.8 8.5 68 19-103 1-76 (78)
195 PRK07211 replication factor A; 73.9 18 0.0004 40.3 9.6 88 4-106 162-260 (485)
196 PRK12366 replication factor A; 73.4 14 0.0003 43.0 8.9 80 4-97 64-153 (637)
197 PRK06293 single-stranded DNA-b 70.5 55 0.0012 31.1 10.7 59 44-105 44-102 (161)
198 PRK08763 single-stranded DNA-b 70.3 54 0.0012 31.3 10.7 86 17-105 7-111 (164)
199 PRK07218 replication factor A; 70.1 32 0.0007 37.8 10.3 78 5-101 60-145 (423)
200 CHL00201 syh histidine-tRNA sy 69.6 7 0.00015 43.1 5.2 31 521-551 287-317 (430)
201 TIGR00389 glyS_dimeric glycyl- 69.5 1.3 2.8E-05 50.1 -0.5 33 209-242 185-220 (551)
202 cd04496 SSB_OBF SSB_OBF: A sub 69.0 17 0.00037 30.6 6.6 57 43-102 44-100 (100)
203 PF03590 AsnA: Aspartate-ammon 68.6 24 0.00052 35.5 8.1 118 143-260 7-142 (244)
204 TIGR00442 hisS histidyl-tRNA s 68.1 7.5 0.00016 42.1 5.1 48 480-552 262-313 (397)
205 PF00436 SSB: Single-strand bi 67.7 9.5 0.00021 32.6 4.7 56 44-102 49-104 (104)
206 cd00673 AlaRS_core Alanyl-tRNA 67.3 22 0.00047 35.8 7.6 99 143-256 2-110 (232)
207 PRK00037 hisS histidyl-tRNA sy 67.1 7.6 0.00017 42.3 4.9 48 480-552 263-314 (412)
208 PRK05813 single-stranded DNA-b 66.9 55 0.0012 32.7 10.4 87 16-105 110-210 (219)
209 PRK13254 cytochrome c-type bio 66.9 30 0.00066 32.4 8.1 63 7-76 41-109 (148)
210 PRK07080 hypothetical protein; 66.8 5.6 0.00012 41.7 3.5 48 209-257 153-202 (317)
211 PRK12293 hisZ ATP phosphoribos 66.7 5.2 0.00011 41.5 3.3 39 480-550 242-280 (281)
212 PF15490 Ten1_2: Telomere-capp 65.5 1E+02 0.0023 27.7 12.1 88 4-103 8-97 (118)
213 TIGR00643 recG ATP-dependent D 65.3 43 0.00094 38.8 10.8 67 8-78 25-96 (630)
214 PLN02265 probable phenylalanyl 65.1 19 0.00042 41.4 7.8 114 142-256 399-528 (597)
215 COG3390 Uncharacterized protei 64.6 34 0.00075 33.1 8.0 62 16-77 46-110 (196)
216 PRK06386 replication factor A; 59.9 60 0.0013 34.9 9.8 80 6-105 110-197 (358)
217 COG1200 RecG RecG-like helicas 59.4 95 0.0021 36.0 11.7 80 11-103 56-139 (677)
218 PRK12295 hisZ ATP phosphoribos 59.3 10 0.00022 41.0 4.0 44 480-548 323-370 (373)
219 PRK02801 primosomal replicatio 58.7 47 0.001 28.8 7.3 52 45-103 50-101 (101)
220 PF13567 DUF4131: Domain of un 58.1 59 0.0013 29.6 8.6 59 15-79 75-145 (176)
221 PRK13150 cytochrome c-type bio 57.3 58 0.0013 30.9 8.1 58 13-77 55-117 (159)
222 PF03459 TOBE: TOBE domain; I 51.4 66 0.0014 24.8 6.5 50 19-72 6-56 (64)
223 PRK13165 cytochrome c-type bio 51.2 1E+02 0.0023 29.2 8.8 58 13-77 55-117 (160)
224 PRK06958 single-stranded DNA-b 49.8 53 0.0012 31.8 6.8 59 44-105 53-111 (182)
225 PRK05813 single-stranded DNA-b 49.7 1.8E+02 0.0039 29.1 10.7 86 14-105 7-103 (219)
226 PRK01584 alanyl-tRNA synthetas 48.4 44 0.00096 38.4 6.9 98 143-255 4-110 (594)
227 PRK06253 O-phosphoseryl-tRNA s 48.1 32 0.0007 38.6 5.6 32 534-565 317-350 (529)
228 PRK06642 single-stranded DNA-b 48.1 1.9E+02 0.0042 27.1 10.1 88 16-105 6-117 (152)
229 cd05694 S1_Rrp5_repeat_hs2_sc2 46.3 36 0.00078 27.7 4.4 47 19-72 7-53 (74)
230 PF11736 DUF3299: Protein of u 45.4 2.2E+02 0.0047 26.6 9.9 82 9-100 49-143 (146)
231 TIGR00621 ssb single stranded 44.0 79 0.0017 30.0 7.0 87 16-105 5-110 (164)
232 PRK08182 single-stranded DNA-b 43.8 98 0.0021 28.9 7.4 58 44-104 55-112 (148)
233 PF12857 TOBE_3: TOBE-like dom 43.8 1.5E+02 0.0032 22.8 7.4 49 19-72 6-56 (58)
234 TIGR00638 Mop molybdenum-pteri 43.4 1.4E+02 0.0029 23.2 7.3 50 19-72 8-58 (69)
235 PRK07274 single-stranded DNA-b 43.2 54 0.0012 29.9 5.5 56 45-104 49-104 (131)
236 COG0072 PheT Phenylalanyl-tRNA 43.1 44 0.00095 39.0 6.0 113 141-257 352-488 (650)
237 PRK07772 single-stranded DNA-b 42.5 2.1E+02 0.0046 27.8 9.7 53 44-99 54-106 (186)
238 PRK07218 replication factor A; 42.4 1.2E+02 0.0027 33.4 9.0 73 16-104 173-253 (423)
239 TIGR01405 polC_Gram_pos DNA po 42.1 1.9E+02 0.0042 36.3 11.5 81 15-103 7-92 (1213)
240 PF02091 tRNA-synt_2e: Glycyl- 42.0 19 0.00041 36.7 2.4 57 476-560 120-177 (284)
241 KOG1637|consensus 40.9 50 0.0011 36.5 5.5 114 139-262 192-333 (560)
242 PF04057 Rep-A_N: Replication 40.5 2.2E+02 0.0049 24.6 8.7 62 33-103 39-100 (101)
243 PRK07217 replication factor A; 38.7 2.5E+02 0.0054 29.7 10.0 84 6-105 75-161 (311)
244 PRK13159 cytochrome c-type bio 38.3 1.3E+02 0.0029 28.3 7.3 57 13-76 49-110 (155)
245 PRK00629 pheT phenylalanyl-tRN 38.0 69 0.0015 38.3 6.7 109 143-256 490-622 (791)
246 PF02721 DUF223: Domain of unk 37.6 1.8E+02 0.004 24.5 7.7 68 36-107 2-70 (95)
247 cd00733 GlyRS_alpha_core Class 37.5 23 0.0005 35.9 2.2 57 476-560 121-178 (279)
248 PF13393 tRNA-synt_His: Histid 37.4 17 0.00036 37.9 1.3 40 480-545 270-311 (311)
249 PRK09348 glyQ glycyl-tRNA synt 37.3 23 0.0005 35.9 2.2 58 476-561 125-183 (283)
250 PF15513 DUF4651: Domain of un 36.9 35 0.00076 27.0 2.7 24 140-163 2-25 (62)
251 COG0587 DnaE DNA polymerase II 36.6 1.2E+02 0.0027 37.5 8.6 62 15-78 976-1043(1139)
252 CHL00192 syfB phenylalanyl-tRN 36.5 74 0.0016 37.5 6.6 27 143-169 401-427 (704)
253 COG3689 Predicted membrane pro 36.1 96 0.0021 31.7 6.3 90 11-106 171-263 (271)
254 PRK14908 glycyl-tRNA synthetas 36.0 23 0.0005 42.9 2.3 58 476-561 126-184 (1000)
255 TIGR00472 pheT_bact phenylalan 35.3 62 0.0013 38.7 5.8 23 147-169 498-520 (798)
256 COG2965 PriB Primosomal replic 34.5 1.6E+02 0.0035 25.6 6.5 41 57-102 62-102 (103)
257 PRK00448 polC DNA polymerase I 33.4 2.6E+02 0.0056 35.9 10.8 80 14-103 235-321 (1437)
258 PF00970 FAD_binding_6: Oxidor 33.3 40 0.00087 28.4 2.9 59 13-74 31-93 (99)
259 PRK09010 single-stranded DNA-b 32.6 1.8E+02 0.0038 28.2 7.4 58 45-105 56-116 (177)
260 KOG2298|consensus 32.2 13 0.00028 40.9 -0.5 31 210-241 212-245 (599)
261 PRK13732 single-stranded DNA-b 31.4 1.6E+02 0.0034 28.4 6.8 87 16-106 7-116 (175)
262 TIGR00388 glyQ glycyl-tRNA syn 30.0 34 0.00073 34.9 2.0 58 476-561 122-180 (293)
263 cd05707 S1_Rrp5_repeat_sc11 S1 29.9 1.1E+02 0.0024 23.8 4.7 49 19-72 3-54 (68)
264 cd05698 S1_Rrp5_repeat_hs6_sc5 29.5 98 0.0021 24.2 4.4 49 19-72 3-54 (70)
265 PLN02900 alanyl-tRNA synthetas 29.2 1.3E+02 0.0028 36.7 7.1 99 143-256 14-131 (936)
266 KOG2783|consensus 28.9 1.1E+02 0.0023 33.2 5.5 55 480-558 263-319 (436)
267 cd04493 BRCA2DBD_OB1 BRCA2DBD_ 27.6 2.5E+02 0.0054 24.5 6.7 50 21-73 6-61 (100)
268 TIGR00418 thrS threonyl-tRNA s 27.0 31 0.00067 39.4 1.3 18 535-552 442-459 (563)
269 PRK05733 single-stranded DNA-b 26.6 2E+02 0.0044 27.6 6.6 57 45-105 55-114 (172)
270 PRK06341 single-stranded DNA-b 26.2 5.8E+02 0.013 24.4 10.6 88 16-105 6-117 (166)
271 PRK06253 O-phosphoseryl-tRNA s 26.2 76 0.0016 35.8 4.1 48 209-256 210-260 (529)
272 TIGR03683 A-tRNA_syn_arch alan 24.4 30 0.00065 41.8 0.6 29 534-563 235-263 (902)
273 PF14134 DUF4301: Domain of un 23.4 1.1E+02 0.0025 34.1 4.7 64 12-75 371-439 (513)
274 PRK00252 alaS alanyl-tRNA synt 23.2 1.8E+02 0.004 35.2 6.9 99 143-256 5-113 (865)
275 COG1311 HYS2 Archaeal DNA poly 22.7 1.1E+02 0.0023 34.1 4.4 64 14-78 137-201 (481)
276 KOG0480|consensus 22.6 2E+02 0.0043 33.4 6.5 34 3-36 122-159 (764)
277 PRK13902 alaS alanyl-tRNA synt 22.0 36 0.00079 41.1 0.7 23 539-562 236-258 (900)
278 PRK06763 F0F1 ATP synthase sub 22.0 1.6E+02 0.0035 28.9 4.9 51 17-77 39-89 (213)
279 COG0752 GlyQ Glycyl-tRNA synth 21.9 58 0.0013 32.9 1.9 57 476-560 126-183 (298)
280 PF01411 tRNA-synt_2c: tRNA sy 21.2 81 0.0018 36.0 3.3 101 145-256 2-113 (552)
281 cd05703 S1_Rrp5_repeat_hs12_sc 21.1 1.6E+02 0.0036 23.6 4.2 49 19-72 3-56 (73)
282 cd04480 RPA1_DBD_A_like RPA1_D 20.7 4.8E+02 0.01 21.4 8.0 55 21-77 8-63 (86)
283 COG1312 UxuA D-mannonate dehyd 20.6 7.9E+02 0.017 26.4 9.9 90 492-585 160-263 (362)
No 1
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-156 Score=1232.90 Aligned_cols=580 Identities=56% Similarity=0.989 Sum_probs=563.3
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECC-CcHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDP-NDIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~-~~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
||||+||+|+.+++|++|+++|||++.|++|+++|++|||.+|.+|||+++ +++++++.+.+|+.|++|.|+|+|..++
T Consensus 1 ~Rt~~cg~l~~~~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~GivQvv~~~~~~~~~~~~a~~lr~E~vi~V~G~V~~R~ 80 (585)
T COG0173 1 MRTHYCGELRESHVGQTVTLSGWVHRRRDHGGLIFIDLRDREGIVQVVFDPEDSPEAFEVASRLRNEFVIQVTGTVRARP 80 (585)
T ss_pred CCceeccccCHHHCCCEEEEEeeeeeccccCCeEEEEcccCCCeEEEEECCccCHHHHHHHHhcCceEEEEEEEEEEecC
Confidence 799999999999999999999999999999999999999999999999998 5778999999999999999999999999
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecCCCCCCccccc-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCC
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSSITLPFQIDEK-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKF 158 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF 158 (595)
++..|+++++|++||++++|+|||.|.++||.+.+. ..++++||+|||||||++.++..+++|+++..++|+||.++||
T Consensus 81 e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~ld~~gF 160 (585)
T COG0173 81 EGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGF 160 (585)
T ss_pred ccccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999885 6889999999999999999999999999999999999999999
Q ss_pred eeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccccccccc
Q psy3762 159 IEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETS 238 (595)
Q Consensus 159 ~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~ 238 (595)
+||+||+|++++||||++|.||++.++|+||.|+||||+|||+||++|++|+|||++|||+|+.+++|+|||||+|+||+
T Consensus 161 ~EiETPiLtkSTPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmS 240 (585)
T COG0173 161 LEIETPILTKSTPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMS 240 (585)
T ss_pred eEeecCccccCCCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCC
Q psy3762 239 FMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNG 318 (595)
Q Consensus 239 ~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (595)
|++.+|+|+++|+|++++++.+.+.++..||+||||+|||++||+||||+|++++++|+++.++++.|.+|++++..+ +
T Consensus 241 F~~~edv~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~-~ 319 (585)
T COG0173 241 FVDEEDVMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANG-G 319 (585)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCccCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987654 4
Q ss_pred eeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecC
Q psy3762 319 RIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGG 398 (595)
Q Consensus 319 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~ 398 (595)
+++++++|++..+||+++|.|.++++.+|.+|++|+++++ ++++++++|+++++...++++++++++||++||++
T Consensus 320 ~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~-----~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A 394 (585)
T COG0173 320 RVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEE-----DGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVA 394 (585)
T ss_pred eEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEec-----CCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEec
Confidence 9999999999999999999999999999999999999988 35899999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccccccCCCCCCC-CCCcccccCcccc
Q psy3762 399 DEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKD-GYEDFIITNPEKI 476 (595)
Q Consensus 399 ~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~-~~~~l~~~dp~~~ 476 (595)
+..+.++++||++|.++++ +++|+ ++.++|+||+|||+|+|++++++|.|+|||||||+. +.+.+. ++|...
T Consensus 395 ~~~~~~~~~lGalR~~l~~-----~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~-~~p~~~ 468 (585)
T COG0173 395 DKKKVVNKALGALRLKLGK-----ELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLE-ADPESV 468 (585)
T ss_pred CcHHHHHHHHHHHHHHHHH-----HhCCCCcccceEEEEEecCccCCccccCceecccCCCCCCCccchhhhh-cCHHHh
Confidence 9999999999999999998 89999 678999999999999999999999999999999998 777676 788888
Q ss_pred ccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCcc
Q psy3762 477 FSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIR 556 (595)
Q Consensus 477 ~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IR 556 (595)
.+.+||||+||+||||||+|||+++.|++.|+.+|++++++.++|+++|+||+||+|||||+|+|||||+|+|+|.+|||
T Consensus 469 ~a~aYDlVlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIR 548 (585)
T COG0173 469 RARAYDLVLNGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIR 548 (585)
T ss_pred hhhhccEEeccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccCCCCCCcCChhhhhhccccccc
Q psy3762 557 DVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKK 592 (595)
Q Consensus 557 dvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 592 (595)
|||+|||+.+|.||||+|||.|+++||+||||++..
T Consensus 549 eVIAFPKt~~a~dllt~APs~v~~~qL~El~i~~~~ 584 (585)
T COG0173 549 DVIAFPKTQQAADLLTNAPSEVDEKQLKELSIKVRP 584 (585)
T ss_pred heeecCCCccccccccCCCCcCCHHHHHhcceeccC
Confidence 999999999999999999999999999999999865
No 2
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=1.2e-138 Score=1146.01 Aligned_cols=580 Identities=52% Similarity=0.925 Sum_probs=546.5
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPN 80 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 80 (595)
||||+|++|+..++|++|+|+|||+++|.+|+++|++|||++|.+|||++++ .+.++.++.|+.||+|.|+|+|..++.
T Consensus 1 ~rt~~~~~l~~~~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg~iQvv~~~~-~~~~~~~~~L~~esvV~V~G~v~~r~~ 79 (583)
T TIGR00459 1 MRTHYCGQLRTEHLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGIVQVVCDPD-ADALKLAKGLRNEDVVQVKGKVSARPE 79 (583)
T ss_pred CCceeHhhcchhhCCCEEEEEEEEEEEEcCCCcEEEEEEeCCccEEEEEeCC-HHHHHHHhcCCCCCEEEEEEEEEeCCc
Confidence 7999999999999999999999999999999999999999999999999876 457788899999999999999999988
Q ss_pred CCCCCCcCCccEEEEEeeEEEeecCCCCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCee
Q psy3762 81 KTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIE 160 (595)
Q Consensus 81 ~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~E 160 (595)
+.+|+.+.+|++||.++++++||+|.++|+.+.+...++++|++|||||||++.++++|++||.|++++|+||.++||+|
T Consensus 80 ~~~n~~~~tg~iEl~~~~i~iL~~a~~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff~~~gFiE 159 (583)
T TIGR00459 80 GNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQQGFLE 159 (583)
T ss_pred cccCccCCCCcEEEEEeEEEEeecCCCCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 87887778999999999999999998788877544577899999999999999999999999999999999999999999
Q ss_pred ccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccccccccccC
Q psy3762 161 IETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240 (595)
Q Consensus 161 V~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~ 240 (595)
|+||+|++++++||++|.++++.+.+.+|+|+||||+|||++|++|++||||||||||+|+++++||||||||||||+|+
T Consensus 160 VeTP~L~~s~~eGar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~ 239 (583)
T TIGR00459 160 IETPMLTKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFM 239 (583)
T ss_pred EECCeeccCCCCCCcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecCC
Confidence 99999999999999999888877788888999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCee
Q psy3762 241 NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRI 320 (595)
Q Consensus 241 ~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (595)
+++|+|+++|++++++++.+.+.++..||+||||.||+++||+||||+|++++++|+++++.+++|.+|...+ ..++.+
T Consensus 240 d~~dvm~~~E~li~~v~~~v~~~~~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~-~~~~~v 318 (583)
T TIGR00459 240 TQEDVMELIEKLVSHVFLEVKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNLI-NDGGRV 318 (583)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHCCCCCccccCcccccHHHhhccCCcchhhhhh-ccCCeE
Confidence 9999999999999999999999888889999999999999999999999999999999999999999999877 457899
Q ss_pred EEEecCCC-CccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCC
Q psy3762 321 IGLKIPGG-FSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGD 399 (595)
Q Consensus 321 ~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~ 399 (595)
+++++|.+ ..++++.++.+.++++..|.+|+.|+.+.+. ...+++.++++++..+.+.+.+++++||+++|+++
T Consensus 319 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~ 393 (583)
T TIGR00459 319 KAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNED-----GINSPIKKFLDEKKGKILLERTDAQNGDILLFGAG 393 (583)
T ss_pred EEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCC-----cCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecC
Confidence 99999987 4689999999999999999999999998652 34578888999888899999999999999999999
Q ss_pred chhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccccccCCCCCCC-CCCcccccCccccc
Q psy3762 400 EKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKD-GYEDFIITNPEKIF 477 (595)
Q Consensus 400 ~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~-~~~~l~~~dp~~~~ 477 (595)
+...++++||++|..+++ .++++ ++.++|+||+|||+|+|+ ++++|.|+|||||||.. |.+.|. +||.+.+
T Consensus 394 ~~~~~~~~lG~lr~~l~~-----~~~l~~~~~~~~~wV~dfPlfe~~-~~~~~~a~hhPfT~p~~~d~~~l~-~~p~~~~ 466 (583)
T TIGR00459 394 SKKIVLDALGALRLKLGK-----DLGLVDPDLFSFLWVVDFPMFEKD-KEGRLCAAHHPFTMPKDEDLENLE-AAPEEAL 466 (583)
T ss_pred cchhHHHHHHHHHHHHHH-----HcCCcCCCCceEEEEEeCCCcccc-CCCceeeeECCCCCCCCCChhhhh-cChhhhh
Confidence 888999999999999997 77888 567999999999999999 67999999999999987 888887 8998899
Q ss_pred cceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccc
Q psy3762 478 SKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRD 557 (595)
Q Consensus 478 ~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRd 557 (595)
+++||||+||+||||||.|+|||++|+++|+.+|++++++++.|++||+||+||||||||+|||||||+|+|||.+||||
T Consensus 467 ~~~yDLvlnG~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRD 546 (583)
T TIGR00459 467 AEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRD 546 (583)
T ss_pred hheeeEEEeceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHcCCCchhh
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccccCCCCCCcCChhhhhhccccccccC
Q psy3762 558 VIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKKTK 594 (595)
Q Consensus 558 vi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 594 (595)
||+|||+.+|.|||++||+.|+++||+||||+...||
T Consensus 547 VIaFPKt~~g~dlm~~aP~~v~~~qL~e~~i~~~~~~ 583 (583)
T TIGR00459 547 VIAFPKTTAAACLMTEAPSFIDEKQLEELSIKYVVKK 583 (583)
T ss_pred eeecCCCCCCcccccCCCCcCCHHHHHHhCCcccccC
Confidence 9999999999999999999999999999999986654
No 3
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.4e-139 Score=1150.62 Aligned_cols=575 Identities=44% Similarity=0.803 Sum_probs=536.5
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc-HHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND-IKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~-~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
.|||+||+|+.+++|++|+|+|||+++|.+|+++|++|||++|.+|||++++. .++++.++.|+.||+|.|+|+|+.+|
T Consensus 58 ~rt~~cg~l~~~~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~L~~esvV~V~G~V~~r~ 137 (652)
T PLN02903 58 SRSHLCGALSVNDVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEFPEAHRTANRLRNEYVVAVEGTVRSRP 137 (652)
T ss_pred cCCCchhhcchhhCCCEEEEEEEEEEEecCCCcEEEEEEcCCccEEEEEeCCccHHHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 48999999999999999999999999999999999999999999999998653 46778889999999999999999998
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc-----CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHh
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK-----NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFL 153 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~-----~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff 153 (595)
.+..|+++++|++||++++++|||+|. ++||++.++ ..++++|++|||||+|++.++++|++||.|++++|+||
T Consensus 138 ~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl 217 (652)
T PLN02903 138 QESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYL 217 (652)
T ss_pred CcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999994 789988642 36799999999999999999999999999999999999
Q ss_pred hh-CCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccc
Q psy3762 154 DS-KKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQ 232 (595)
Q Consensus 154 ~~-~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~ 232 (595)
.+ +||+||+||+|++++++||++|.++++...+.+|||+||||+|||++|++|++||||||||||+|+++++|||||||
T Consensus 218 ~~~~gFiEVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTq 297 (652)
T PLN02903 218 EDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQ 297 (652)
T ss_pred HhcCCeEEEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceee
Confidence 97 99999999999999999999998888777788999999999999999999999999999999999999999999999
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHH
Q psy3762 233 IDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKI 312 (595)
Q Consensus 233 lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~ 312 (595)
|||||+|++++|+|+++|++++++++.+.+.+++.||+||||.||+++||+||||+|+++++.|+++++++++|.+|+..
T Consensus 298 LE~E~sf~d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~~~~~~~f~~f~~~ 377 (652)
T PLN02903 298 LDMELAFTPLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFAGA 377 (652)
T ss_pred eeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHHhhcCCCchhhhhh
Confidence 99999999999999999999999999999888878999999999999999999999999999999999999999999987
Q ss_pred hhccCCeeEEEecCCCCccchhhh----HHHHHHHHHhCCCCceEEEEeccccccCCCCc--ccccccCHHHHHHHHHHh
Q psy3762 313 ANMKNGRIIGLKIPGGFSISRNEI----NYYTQFVKTYGAKGLTYIKIHKISKEFDGLKS--PIIKYFNNLILEKIINKT 386 (595)
Q Consensus 313 ~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~l~~~~ 386 (595)
+ ..++.|++|++|.+..++|+.+ +.+.++++. |.+|+.|+++.+. | ++.+ ++.++++++...+|.+.+
T Consensus 378 ~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~gl~~~~~~~~--~--~~~~~~~~~k~~~~~~~~~l~~~~ 451 (652)
T PLN02903 378 L-ESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKS-GAKGLAFLKVLDD--G--ELEGIKALVESLSPEQAEQLLAAC 451 (652)
T ss_pred h-ccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHc-CCCceEEEEEcCC--C--CccCccchhhcCCHHHHHHHHHHh
Confidence 6 4578999999998777898888 788887776 9999999998652 2 3555 788899999999999999
Q ss_pred cCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccccccCCCCCCC-C
Q psy3762 387 EAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKD-G 464 (595)
Q Consensus 387 ~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~-~ 464 (595)
++++||+++|++++...++++||++|..+++ .++|+ ++.++|+||+|||+|+|++++++|.|+|||||||.. |
T Consensus 452 ~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~-----~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~~d 526 (652)
T PLN02903 452 GAGPGDLILFAAGPTSSVNKTLDRLRQFIAK-----TLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNPED 526 (652)
T ss_pred CCCCCcEEEEECCcchHHHHHHHHHHHHHHH-----HcCCCCCCCceEEEEEeCCCCCccCCCCceEecCCCCCCCCCcc
Confidence 9999999999999888999999999999998 78888 667999999999999999999999999999999976 5
Q ss_pred CCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHH
Q psy3762 465 YEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDR 544 (595)
Q Consensus 465 ~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDR 544 (595)
.+. +.+.++.+||||+||+||||||+|+||+++|+++|+.+|+++++++.+|+|||+||+||+|||||||+||||
T Consensus 527 ~~~-----l~~~~a~~YDLVlNG~EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~alGldR 601 (652)
T PLN02903 527 MGD-----LSSARALAYDMVYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAYGLDR 601 (652)
T ss_pred hhh-----hhhhhhhcceeEecceeeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeecHHH
Confidence 433 335789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCccccccCCCCCCccccCCCCCCcCChhhhhhcccccc
Q psy3762 545 LITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYK 591 (595)
Q Consensus 545 Lvm~l~g~~~IRdvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 591 (595)
|+|+|+|.+||||||+|||+.+|+|||++||+.|+++||+||||++.
T Consensus 602 lvmll~~~~~IrdviaFPKt~~g~dlm~~aPs~v~~~qL~el~i~~~ 648 (652)
T PLN02903 602 LVMLLAGAKSIRDVIAFPKTTTAQCALTRAPSEVDDKQLQDLSIAST 648 (652)
T ss_pred HHHHHcCCCchHheEecCCCCCccccccCCCCcCCHHHHHhcceEee
Confidence 99999999999999999999999999999999999999999999874
No 4
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.2e-137 Score=1147.08 Aligned_cols=579 Identities=56% Similarity=1.009 Sum_probs=546.8
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPN 80 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 80 (595)
||||+|++++..++|++|+|+|||+++|.+|+++|++|||++|.+|||+++. .++++.++.|+.||+|.|+|+|..++.
T Consensus 3 ~r~~~~~~l~~~~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~iQ~v~~~~-~~~~~~~~~l~~es~V~V~G~v~~~~~ 81 (588)
T PRK00476 3 MRTHYCGELRESHVGQTVTLCGWVHRRRDHGGLIFIDLRDREGIVQVVFDPD-AEAFEVAESLRSEYVIQVTGTVRARPE 81 (588)
T ss_pred ccceeHHHhhHHhCCCEEEEEEEEEEEEeCCCeEEEEEEeCCceEEEEEeCC-HHHHHHHhCCCCCCEEEEEEEEEecCC
Confidence 5899999999999999999999999999999999999999999999999863 567888899999999999999999988
Q ss_pred CCCCCCcCCccEEEEEeeEEEeecCCCCCCccccc-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCe
Q psy3762 81 KTNNTNLISGNIEILCRELKILNSSITLPFQIDEK-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFI 159 (595)
Q Consensus 81 ~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~ 159 (595)
+..|+++.+|++||.+++++|||+|.++|+++.+. ..++++|++|||||+|++.+++++++||.+++++|+||.++||+
T Consensus 82 ~~~n~~~~~g~~El~~~~i~il~~a~~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~gFi 161 (588)
T PRK00476 82 GTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDNGFL 161 (588)
T ss_pred cccCccCCCCcEEEEEeEEEEEecCCCCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 88888888999999999999999998888887553 46799999999999999999999999999999999999999999
Q ss_pred eccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCcccccccccccc
Q psy3762 160 EIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSF 239 (595)
Q Consensus 160 EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~ 239 (595)
||+||+|++++++||++|.++++.+.+.+|+|+||||+|||++|++|++||||||||||+|+++++|||||||||||++|
T Consensus 162 EV~TP~L~~s~~ega~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af 241 (588)
T PRK00476 162 EIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSF 241 (588)
T ss_pred EEECCeeecCCCCCCccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCcccccceeeecC
Confidence 99999999999999999999988788999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCe
Q psy3762 240 MNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGR 319 (595)
Q Consensus 240 ~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (595)
++++|+|+++|++++++++.+.+.++..||+|+||.||+++||+||||+|++++++|+++++.+++|.++++.++ .+++
T Consensus 242 ~~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~-~gg~ 320 (588)
T PRK00476 242 VTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGAAN-DGGR 320 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehhHHHHhccCCchhhhhhhc-cCCe
Confidence 999999999999999999999888887899999999999999999999999999999999999999999988776 5789
Q ss_pred eEEEecCCCCccc-hhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecC
Q psy3762 320 IIGLKIPGGFSIS-RNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGG 398 (595)
Q Consensus 320 ~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~ 398 (595)
+++|++|....++ |+.++.|.++++..|.+|+.|+++.+. ++.+++.++++++..++|.+.+++++||+++|++
T Consensus 321 VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~-----~l~~~~akflsee~~~~L~e~l~~k~GDll~~~A 395 (588)
T PRK00476 321 VKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNED-----GLKGPIAKFLSEEELAALLERTGAKDGDLIFFGA 395 (588)
T ss_pred EEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCC-----CCcCchhhcCCHHHHHHHHHHhCCCCCCEEEEEC
Confidence 9999999776666 999999999999999999999987651 3667888999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccccccCCCCCCC-CCCccccc-Cccc
Q psy3762 399 DEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKD-GYEDFIIT-NPEK 475 (595)
Q Consensus 399 ~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~-~~~~l~~~-dp~~ 475 (595)
++.+.++++||+||..+++ .++++ ++.++|+||+|||+|+|++++++|.|+|||||||.. |.+.|. + ||.+
T Consensus 396 ~~~~~v~~aLG~LR~~L~~-----~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~-~~~p~~ 469 (588)
T PRK00476 396 DKAKVVNDALGALRLKLGK-----ELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELE-TTDPGK 469 (588)
T ss_pred CchHHHHHHHHHHHHHHHH-----HcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhh-cCCHHH
Confidence 9888899999999999998 78888 567999999999999999988999999999999987 777777 6 9988
Q ss_pred cccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCc
Q psy3762 476 IFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSI 555 (595)
Q Consensus 476 ~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~I 555 (595)
..+++||||+||+||+|||+|+||+++|+++|+.+|++++++++.|+|||+||+||+|||||||||+|||+|+|+|.+||
T Consensus 470 ~~a~~~dlv~ng~E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~~i 549 (588)
T PRK00476 470 ARAYAYDLVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSI 549 (588)
T ss_pred hhhheeeeEEeeeeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCccH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccCCCCCCcCChhhhhhccccccc
Q psy3762 556 RDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKK 592 (595)
Q Consensus 556 Rdvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 592 (595)
||||+|||+.+|.|||++|||.|+++||+||||++..
T Consensus 550 rdvi~fp~~~~g~d~~~~aP~~v~~~ql~~~~~~~~~ 586 (588)
T PRK00476 550 RDVIAFPKTQSAQDLLTGAPSPVDEKQLRELGIRLRK 586 (588)
T ss_pred HheeeccCCCCccccccCCCCcCCHHHHHhcCccccC
Confidence 9999999999999999999999999999999999864
No 5
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=2.9e-137 Score=1148.29 Aligned_cols=577 Identities=44% Similarity=0.813 Sum_probs=538.4
Q ss_pred ccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc--HHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND--IKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 2 ~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~--~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
|||+||+|+.+++|++|+|+|||+++|.+|+++|++|||++|.+|||++++. .++++.+.+|+.||+|.|+|+|+.++
T Consensus 5 r~~~cg~l~~~~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~~L~~EsvV~V~G~v~~r~ 84 (706)
T PRK12820 5 DRSFCGHLSLDDTGREVCLAGWVDAFRDHGELLFIHLRDRNGFIQAVFSPEAAPADVYELAASLRAEFCVALQGEVQKRL 84 (706)
T ss_pred cccccccCChhhCCCEEEEEEEEEEEEcCCCcEEEEEEeCCccEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEeEEeccC
Confidence 8999999999999999999999999999999999999999999999998653 46788889999999999999999988
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecCCCCCCccccc------------CcchhhhccccchhhccHhhHHHHHHHHHHHH
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSSITLPFQIDEK------------NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTM 147 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~------------~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~ 147 (595)
.+..|+.+.+|++||++++++|||+|.++||++.++ ..++++|++|||||+|++.++++|++||.+++
T Consensus 85 ~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~ 164 (706)
T PRK12820 85 EETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIK 164 (706)
T ss_pred ccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHH
Confidence 777788778899999999999999998889987653 24689999999999999999999999999999
Q ss_pred HHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCC
Q psy3762 148 EVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ 227 (595)
Q Consensus 148 ~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~ 227 (595)
++|+||.++||+||+||+|++++++||++|.++++.+.+.+|+|+||||+|||++|++|++||||||||||+|+++++||
T Consensus 165 ~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~ 244 (706)
T PRK12820 165 CARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQ 244 (706)
T ss_pred HHHHHHHHCCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcC
Confidence 99999999999999999999999999999988887777888899999999999999999999999999999999999999
Q ss_pred ccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchh
Q psy3762 228 PEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFK 307 (595)
Q Consensus 228 ~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~ 307 (595)
||||||||||+|++++|+|+++|++++++++ +.+..++.||+||||.||+++||+||||+|++++++|+++++..+.|.
T Consensus 245 pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~~~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~~~~~~~~~f~ 323 (706)
T PRK12820 245 PEFTQLDIEASFIDEEFIFELIEELTARMFA-IGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFENTRYG 323 (706)
T ss_pred ccccccceeeccCCHHHHHHHHHHHHHHHHH-hcCcCCCCCceEEEHHHHHHHhCCCCCccccCcEEEEHHHHhccCCch
Confidence 9999999999999999999999999999997 456667789999999999999999999999999999999999999999
Q ss_pred hHHHHhhccCCeeEEEecCCCC-ccchhhhHH-HH-HHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHH
Q psy3762 308 LFSKIANMKNGRIIGLKIPGGF-SISRNEINY-YT-QFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIIN 384 (595)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 384 (595)
+|...++ .++++++|++|.+. .++|+.++. |. ++++.+|.+|+.|+++.+ .++.+++.++++++...+|.+
T Consensus 324 ~f~~~~~-~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ 397 (706)
T PRK12820 324 IFKQILQ-RGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEA-----GGLDSNIVQFFSADEKEALKR 397 (706)
T ss_pred hhhhhhc-cCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECC-----CCcCCchhccCCHHHHHHHHH
Confidence 9988763 47899999999875 599999998 77 899999999999998854 257788999999998999999
Q ss_pred HhcCcCCCeEEecCCch-hhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccccccCCCCCC
Q psy3762 385 KTEAQNGDIIFLGGDEK-NIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPK 462 (595)
Q Consensus 385 ~~~~~~gd~~~~~~~~~-~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~ 462 (595)
.+++++||++||.+++. ..++++||++|..+++ .++++ ++.++|+||+|||+|+|+++ ++|.|+|||||||.
T Consensus 398 ~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~-----~~~l~~~~~~~flWV~dFPlfe~~~e-~~~~a~HHPFT~p~ 471 (706)
T PRK12820 398 RFHAEDGDVIIMIADASCAIVLSALGQLRLHLAD-----RLGLIPEGVFHPLWITDFPLFEATDD-GGVTSSHHPFTAPD 471 (706)
T ss_pred HhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHH-----HcCCCCCCCceEEEEEeCCcccCCCC-CCeeeeeCCCCCcC
Confidence 99999999999999865 6789999999999998 78888 56799999999999999987 89999999999998
Q ss_pred C-CCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceecc
Q psy3762 463 D-GYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFG 541 (595)
Q Consensus 463 ~-~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glG 541 (595)
. |.+.|..+||.+.++.+||||+||+||||||+||||+++|+++|+.+|++++++.++|+|||+||+||+|||||||+|
T Consensus 472 ~~d~~~l~~~~p~~~~~~~YDLV~nG~E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G 551 (706)
T PRK12820 472 REDFDPGDIEELLDLRSRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALG 551 (706)
T ss_pred ccChhhhccCChHHhhhheeeEEecceeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceecc
Confidence 7 777776238888899999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHcCCCCccccccCCCCCCccccCCCCCCcCChhhhhhcccccc
Q psy3762 542 LDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYK 591 (595)
Q Consensus 542 lDRLvm~l~g~~~IRdvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 591 (595)
||||+|+|+|.+||||||+|||+.+|.|||++|||.|+++||+||||+..
T Consensus 552 ~dRlvm~l~~~~sirdviaFPK~~~g~dlm~~aPs~v~~~qL~el~i~~~ 601 (706)
T PRK12820 552 LDRVVSMILQTPSIREVIAFPKNRSAACPLTGAPSEVAQEQLAELGLLDL 601 (706)
T ss_pred HHHHHHHHcCCccHHHhcccCCCCCCCCcccCCCCcCCHHHHHHhCchhh
Confidence 99999999999999999999999999999999999999999999999863
No 6
>KOG2411|consensus
Probab=100.00 E-value=6.3e-120 Score=935.79 Aligned_cols=580 Identities=39% Similarity=0.652 Sum_probs=498.7
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH-HHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI-KIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~-~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
+||++|++|+...+|++|.||||+...|.+|.+.|..|||.+|.+|+.++++.. ..-+....++.||+|.|.|+|+.+|
T Consensus 33 ~~t~~~~el~~~~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~vq~lls~~s~~l~~~~~~~v~~e~vv~v~gtvv~Rp 112 (628)
T KOG2411|consen 33 SRTSLCGELSVNDVGKKVVLCGWLELHRVHKMLTFFNLRDAYGIVQQLLSPDSFPLAQKLENDVPLEDVVQVEGTVVSRP 112 (628)
T ss_pred hhhccchhhccCccCCEEEEeeeeeeeeccccceEEEeeccCcceEEEecchhhhHHhcccCCCChhheEeeeeeEeccc
Confidence 589999999999999999999999999999999999999999999999998753 2223345689999999999999999
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc-----CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHh
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK-----NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFL 153 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~-----~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff 153 (595)
...+|+++++|.+|+.++++++++++. .+|+.+.+- ...+.+|+.+||||||++.++..+++||.+...+|+||
T Consensus 113 ~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl 192 (628)
T KOG2411|consen 113 NESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYL 192 (628)
T ss_pred ccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 689887664 46788999999999999999999999999999999999
Q ss_pred hhC-CCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccc
Q psy3762 154 DSK-KFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQ 232 (595)
Q Consensus 154 ~~~-gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~ 232 (595)
.++ ||+||+||.|.+.+|+||++|.||+++..|.||.|+||||+|||+||++|++|+|||++|||+|+.+++|+|||||
T Consensus 193 ~n~~GFvevETPtLFkrTPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQ 272 (628)
T KOG2411|consen 193 NNRHGFVEVETPTLFKRTPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQ 272 (628)
T ss_pred hhhcCeeeccCcchhccCCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCccee
Confidence 765 7999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHH
Q psy3762 233 IDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKI 312 (595)
Q Consensus 233 lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~ 312 (595)
+|+||+|++.+|+|+++|+++.++|....++.++.||+||||++||++||+||||+|+++++.|+++.+.... ...
T Consensus 273 vD~EMsF~~~~dim~liEdll~~~ws~~k~~~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~----~~~ 348 (628)
T KOG2411|consen 273 VDMEMSFTDQEDIMKLIEDLLRYVWSEDKGIQLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKSF----EEA 348 (628)
T ss_pred eeeEEeccCHHHHHHHHHHHHHHhchhhcCCCCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhhh----hhh
Confidence 9999999999999999999999999999998889999999999999999999999999999999998875431 111
Q ss_pred hhc-cCCeeEEEecCCCC-ccch-hhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCc
Q psy3762 313 ANM-KNGRIIGLKIPGGF-SISR-NEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQ 389 (595)
Q Consensus 313 ~~~-~~~~~~~~~~p~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 389 (595)
... .-....+++.-... ..+. +.-+.+...- ..+..|+.++...+. ..+|..++.+.+.+.....+.+.++++
T Consensus 349 ~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~-~~~~~~~~f~~~~~~---~~~w~~~~~~l~~e~~~~el~~~~~l~ 424 (628)
T KOG2411|consen 349 LLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLG-KSGFVGLPFPIEHDA---NKNWFKKFSSLTDEAVAIELIKQLGLA 424 (628)
T ss_pred hhcCCccceEEEEeccccccchhhHHhHHHHHHh-hcccccceeeeeccc---hhhhhhhchhhccchHHHHHHHHhCCC
Confidence 111 11223333322111 1111 1112232222 245677777665541 234555665555566667899999999
Q ss_pred CCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccc-cccccccCCCCCCC-CCC
Q psy3762 390 NGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINN-NWIARHHPFTAPKD-GYE 466 (595)
Q Consensus 390 ~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~-~~~a~~~PF~~~~~-~~~ 466 (595)
.||++++..+.+-..++.||++|..+...| ..++. ++...++||+|||+|++.+|.+ ++.++|||||+|+. |.+
T Consensus 425 ~~Div~~~~g~~~~~~~~LgrlRL~l~~l~---~~~l~d~~~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~ 501 (628)
T KOG2411|consen 425 EGDIVLLCVGPKVSVNTPLGRLRLVLQDLL---VKNLRDKSKFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDID 501 (628)
T ss_pred CCCEEEEeccCCccCCCchHHHHHHHHHHH---hccccccccceEEEEEeccccCccccCCceeccccCCCCCCChhhhh
Confidence 999999999998888899999997766532 23344 5788999999999998666656 89999999999999 899
Q ss_pred cccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHH
Q psy3762 467 DFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLI 546 (595)
Q Consensus 467 ~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLv 546 (595)
.|. +.|.+.++.+||||+||+||||||.||||++.|+.+++....-|+.... ++++|+||.+|||||||||+|||||+
T Consensus 502 ~L~-s~p~~~rgqhYDlV~NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s-~gHLL~ALd~GaPPHGGiAlGlDRlv 579 (628)
T KOG2411|consen 502 LLE-SAPEKIRGQHYDLVVNGVELGGGSIRIHNPDIQRYVLEDILKIPEDAES-KGHLLNALDMGAPPHGGIALGLDRLV 579 (628)
T ss_pred Hhh-cCchhhhcceeeeEEccEeecCceeEecCHHHHHHHHHHHhcCchhhhh-HHHHHHHhhcCCCCCCceeecHHHHH
Confidence 998 8888899999999999999999999999999999999954444444443 48999999999999999999999999
Q ss_pred HHHcCCCCccccccCCCCCCccccCCCCCCcCChhhhhhcccccccc
Q psy3762 547 TIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKKT 593 (595)
Q Consensus 547 m~l~g~~~IRdvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 593 (595)
|+|||+.||||||+|||+..|.|||++||+.|+++||..|||++++.
T Consensus 580 aml~~a~sIRDVIAFPKt~~G~Dlls~sPs~ip~e~L~~Y~I~~~~~ 626 (628)
T KOG2411|consen 580 AMLTGAPSIRDVIAFPKTTTGADLLSNSPSEIPEEQLEDYNIRVSNS 626 (628)
T ss_pred HHHcCCCchheeeeccccCCccccccCCCCCCCHHHhhhcceeecCC
Confidence 99999999999999999999999999999999999999999999874
No 7
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-94 Score=757.99 Aligned_cols=408 Identities=32% Similarity=0.527 Sum_probs=349.8
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCC-c-HHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPN-D-IKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~-~-~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
|+++++.++.....+++|+|+|||+++|.+|+++|+.|||++|.+|||+.++ . .+.++ +++|+.||+|.|+|+|+++
T Consensus 2 ~~~~~i~di~~~~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~iQ~v~~~~~~~~~~~~-~~~L~~es~v~V~G~v~~~ 80 (435)
T COG0017 2 MKRTYIKDIKPHVGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGFIQAVVPKNKVYEELFK-AKKLTLESSVVVTGIVKAS 80 (435)
T ss_pred CceeeHHhhhccCCCcEEEEEEEeeeecccCCeEEEEEEcCCcEEEEEEECCCCcHHHhh-hhcCCCccEEEEEEEEEcC
Confidence 3589999998877779999999999999999999999999999999999863 2 46777 8999999999999999998
Q ss_pred CCCCCCCCcCCccEEEEEeeEEEeecCCCCCCcccccCc-chhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCC
Q psy3762 79 PNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNI-LEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKK 157 (595)
Q Consensus 79 ~~~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~~~-~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~g 157 (595)
+. ..|++||++++++|+|.+.+ |||++++.. ..++++++|||++|++..+++|++|+.+++++|+||.++|
T Consensus 81 ~~-------a~~g~El~v~~i~Vl~~a~~-~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~g 152 (435)
T COG0017 81 PK-------APQGFELQVEKIEVLGEADP-PYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENG 152 (435)
T ss_pred CC-------CCCCEEEEEEEEEEeeccCC-CCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhCC
Confidence 75 46889999999999999954 888877655 4999999999999999999999999999999999999999
Q ss_pred CeeccCceeecCCCCCCcc-ccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-ccccccc
Q psy3762 158 FIEIETPILSKSTPEGARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDC 235 (595)
Q Consensus 158 F~EV~TPiL~~~~~~ga~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~ 235 (595)
|+||+||+|+++++||+.+ |.+. +.+..+||+||||||+|+++++ ++|||+|||+||+|+++|+||+ ||||+|.
T Consensus 153 F~eV~tP~i~~~~~EGg~elF~v~---yf~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~ 228 (435)
T COG0017 153 FTEVHTPIITASATEGGGELFKVD---YFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDP 228 (435)
T ss_pred cEEecCceEeccCCCCCceeEEEe---ecCcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCcchhhhHheecc
Confidence 9999999999999999866 5554 4566799999999999998666 9999999999999999999999 9999999
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHcCCC-------------C----CCCCccccHHHHHHHhCCCCCccccchhhcchh
Q psy3762 236 ETSFMNEEEIRNLFEEMIRVIFYKTLNIK-------------L----PNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLT 298 (595)
Q Consensus 236 e~~~~~~~dl~~~~E~ll~~l~~~~~~~~-------------~----~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~ 298 (595)
||+|++++|+|+++|++|+++++.++..+ + ..||+||||.||++.+...
T Consensus 229 Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~~-------------- 294 (435)
T COG0017 229 EMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEAIEILEEK-------------- 294 (435)
T ss_pred eeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhcccccCCccEEEHHHHHHHHHhc--------------
Confidence 99999999999999999999999886321 1 2479999999998864210
Q ss_pred hhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHH
Q psy3762 299 NIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLI 378 (595)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (595)
|.+. ..||. +++++.++
T Consensus 295 ------------------------------------------------~~e~--------~~~Gd-Dl~~e~Er------ 311 (435)
T COG0017 295 ------------------------------------------------GFEK--------VEWGD-DLGTEHER------ 311 (435)
T ss_pred ------------------------------------------------CCcc--------cCCCC-ccCCHHHH------
Confidence 0000 01222 23333222
Q ss_pred HHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCC
Q psy3762 379 LEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPF 458 (595)
Q Consensus 379 ~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF 458 (595)
.| +++ ....|+||+|||.. .+||
T Consensus 312 ----------------------------~l-------~e~----------~~~~~vfv~~yP~~------------~kpF 334 (435)
T COG0017 312 ----------------------------YL-------GEE----------YFKPPVFVTNYPKE------------IKPF 334 (435)
T ss_pred ----------------------------HH-------HHH----------hCCCcEEEEeCccc------------cccc
Confidence 22 210 12337999999985 4999
Q ss_pred CCCCCCCCcccccCccccccceeeEEecC-EEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccc
Q psy3762 459 TAPKDGYEDFIITNPEKIFSKAYDLIING-WEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGG 537 (595)
Q Consensus 459 ~~~~~~~~~l~~~dp~~~~~~~fDl~~~G-~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G 537 (595)
||+.+ . ++| .++.+|||+++| .||.|||||+||++.+.++|++.|++++ .|+|||+++|||+|||||
T Consensus 335 Ym~~~-----~-d~p--~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e----~~~wYld~~kyG~~PHaG 402 (435)
T COG0017 335 YMRPD-----P-DNP--GTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPE----SYEWYLDLRKYGMPPHAG 402 (435)
T ss_pred ccccC-----C-CCC--CeEEEEeeecCCceeeecceeccccHHHHHHHHHHcCCChH----HhHHHHHHHHcCCCCCcc
Confidence 99865 1 444 689999999999 6999999999999999999999999997 599999999999999999
Q ss_pred eeccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 538 IAFGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 538 ~glGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
||||+|||+|++||++|||||+||||+++.
T Consensus 403 fGlG~ERlv~~i~gl~nIRea~pFPR~~~r 432 (435)
T COG0017 403 FGLGLERLVMYILGLDNIREAIPFPRDPGR 432 (435)
T ss_pred cccCHHHHHHHHhCCCcceeccccCCCCCC
Confidence 999999999999999999999999999953
No 8
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-90 Score=753.58 Aligned_cols=412 Identities=31% Similarity=0.565 Sum_probs=347.5
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc-HHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND-IKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~-~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
||||+|++|+....|++|+|+|||+++|.+|+++|++|||++|.+|||++.+. .++++.++.|+.||+|.|+|+|.+++
T Consensus 2 ~~~~~~~~l~~~~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~~~L~~gs~V~v~G~v~~~~ 81 (437)
T PRK05159 2 MKRHLTSELTPELDGEEVTLAGWVHEIRDLGGIAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRESVVSVTGTVKANP 81 (437)
T ss_pred CceeEhhhCChhhCCCEEEEEEEeEeeecCCCeEEEEEEcCCcEEEEEEeCCccHHHHHHHhCCCCCcEEEEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999998653 45778889999999999999999874
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCC
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKK 157 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~g 157 (595)
. ..|++||++++++|+|+|. ++|+...++ ..+.++|+++||||+|++.++++|++||.|++++|+||.++|
T Consensus 82 ~-------~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~g 154 (437)
T PRK05159 82 K-------APGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYENG 154 (437)
T ss_pred C-------CCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3 3578999999999999997 688776543 346899999999999999999999999999999999999999
Q ss_pred CeeccCceeecCCCCCCcc-ccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-ccccccc
Q psy3762 158 FIEIETPILSKSTPEGARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDC 235 (595)
Q Consensus 158 F~EV~TPiL~~~~~~ga~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~ 235 (595)
|+||+||+|+.++++|+.+ |.+. +.++.+||++|||+|||+++++|++||||||||||||+++++||+ |||||||
T Consensus 155 f~EV~TP~L~~~~~eg~~~~f~~~---~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~ 231 (437)
T PRK05159 155 FTEIFTPKIVASGTEGGAELFPID---YFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDV 231 (437)
T ss_pred CEEEeCCcccccCCCCCcceEeEE---ecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeee
Confidence 9999999999888887655 4332 457888999999999999999999999999999999999987665 9999999
Q ss_pred ccccCC-HHHHHHHHHHHHHHHHHHHcC----------CC---CCCCCccccHHHHHHHhCCCCCccccchhhcchhhhh
Q psy3762 236 ETSFMN-EEEIRNLFEEMIRVIFYKTLN----------IK---LPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIM 301 (595)
Q Consensus 236 e~~~~~-~~dl~~~~E~ll~~l~~~~~~----------~~---~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~ 301 (595)
|++|++ ++++|+++|++++++++.+.+ .. ...||+||||.||++.+.....
T Consensus 232 e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~~~~~~f~rit~~eA~~~l~~~~~--------------- 296 (437)
T PRK05159 232 EMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELPVPETPIPRITYDEAIEILKSKGN--------------- 296 (437)
T ss_pred eeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCCcCCCCceEeEHHHHHHHHHHcCC---------------
Confidence 999998 999999999999999987642 22 2368999999999986521000
Q ss_pred hccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHH
Q psy3762 302 KDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEK 381 (595)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 381 (595)
.++ +|. +++.
T Consensus 297 ----------------------~~~----------------------------------~~~-~~~~------------- 306 (437)
T PRK05159 297 ----------------------EIS----------------------------------WGD-DLDT------------- 306 (437)
T ss_pred ----------------------CCC----------------------------------CCC-CCCc-------------
Confidence 000 000 0110
Q ss_pred HHHHhcCcCCCeEEecCCchhhHHHHHHHH-HHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCC
Q psy3762 382 IINKTEAQNGDIIFLGGDEKNIVNNFMSAL-RIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTA 460 (595)
Q Consensus 382 l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~-r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~ 460 (595)
..++.|+++ ++.++ ..|+||+|||... +|||+
T Consensus 307 ---------------------~~e~~l~~~~~~~~~--------------~~p~fi~~~P~~~------------~pfy~ 339 (437)
T PRK05159 307 ---------------------EGERLLGEYVKEEYG--------------SDFYFITDYPSEK------------RPFYT 339 (437)
T ss_pred ---------------------HHHHHHHHHHhhhcC--------------CceEEEecCchhc------------Cccee
Confidence 011222221 11222 2399999999853 89987
Q ss_pred CCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceec
Q psy3762 461 PKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAF 540 (595)
Q Consensus 461 ~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~gl 540 (595)
..+ . ++| .++++|||+++|+||+|||+|+|||++|+++|+.+|++++ .++|||+|++||+||||||||
T Consensus 340 ~~~-----~-~~~--~~~~~fdl~~~g~Ei~~g~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~a~~~G~pp~~G~gi 407 (437)
T PRK05159 340 MPD-----E-DDP--EISKSFDLLFRGLEITSGGQRIHRYDMLVESIKEKGLNPE----SFEFYLEAFKYGMPPHGGFGL 407 (437)
T ss_pred eec-----C-CCC--CEEEEEEEEECCEEEeeCeEEcCCHHHHHHHHHHcCCCHH----HHHHHHHHHHCCCCCCCeeeE
Confidence 542 1 455 6899999999999999999999999999999999999886 479999999999999999999
Q ss_pred cHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 541 GLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 541 GlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
|||||+|+++|.+|||||++|||+++
T Consensus 408 GidRl~m~~~g~~~Irdv~~FPr~~~ 433 (437)
T PRK05159 408 GLERLTMKLLGLENIREAVLFPRDRH 433 (437)
T ss_pred hHHHHHHHHcCCCchhEEeeccCCCC
Confidence 99999999999999999999999995
No 9
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=3.5e-90 Score=746.76 Aligned_cols=405 Identities=31% Similarity=0.522 Sum_probs=343.7
Q ss_pred ccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc--HHHHHHHhcCCCCcEEEEEeEEEeCCCC
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND--IKIYKIAKIIRNEFCLQIIGKVCSRPNK 81 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~--~~~~~~~~~l~~es~V~V~G~v~~~~~~ 81 (595)
|+|++|+.++.|++|+|+|||+++|.+|+++|++|||++|.+|||++.+. .++++++.+|+.||+|.|+|+|+.++.
T Consensus 1 ~~~~~l~~~~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g~iQ~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~- 79 (428)
T TIGR00458 1 VYSADIKPEMDGQEVTFMGWVHEIRDLGGLIFVLLRDREGLIQITAPAKKVSKNLFKWAKKLNLESVVAVRGIVKIKEK- 79 (428)
T ss_pred CchhhCchhhCCCEEEEEEEEEEEecCCCcEEEEEEeCCeeEEEEEECCcCCHHHHHHHhCCCCCcEEEEEEEEEecCC-
Confidence 78999999999999999999999999999999999999999999998653 467888899999999999999997532
Q ss_pred CCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCe
Q psy3762 82 TNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFI 159 (595)
Q Consensus 82 ~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~ 159 (595)
..|++||++++++|+|+|. ++|+..++. ..+.++|+++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 80 ------~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gf~ 153 (428)
T TIGR00458 80 ------APGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFI 153 (428)
T ss_pred ------CCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 3589999999999999996 678776553 35689999999999999999999999999999999999999999
Q ss_pred eccCceeecCCCCCCcc-ccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-ccccccccc
Q psy3762 160 EIETPILSKSTPEGARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCET 237 (595)
Q Consensus 160 EV~TPiL~~~~~~ga~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~ 237 (595)
||+||+|++++++|+.+ |.+. +.+..+||+||||+|||+++++|++|||+||||||||+++++||+ ||||||||+
T Consensus 154 EV~TP~L~~~~~eg~~~~f~v~---~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~ 230 (428)
T TIGR00458 154 EVHTPKLVASATEGGTELFPIT---YFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEM 230 (428)
T ss_pred EEeCCceecCCCCCCcceeeeE---ecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeee
Confidence 99999999888888665 4432 456778899999999999999999999999999999999987775 999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCC----------C---CCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhcc
Q psy3762 238 SFMNEEEIRNLFEEMIRVIFYKTLNIK----------L---PNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDS 304 (595)
Q Consensus 238 ~~~~~~dl~~~~E~ll~~l~~~~~~~~----------~---~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~ 304 (595)
+|++++|+|+++|++++++++.+.+.+ + ..||+||||.||++.+..
T Consensus 231 a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~l~~--------------------- 289 (428)
T TIGR00458 231 AFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEKPEGKFVRLTYDEAIEMANA--------------------- 289 (428)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccccccCCCCceEEEHHHHHHHHHH---------------------
Confidence 999999999999999999998775421 1 248999999999864210
Q ss_pred chhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHH
Q psy3762 305 DFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIIN 384 (595)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 384 (595)
.|. +..+|. . ++.
T Consensus 290 -----------------------------------------~g~---------~~~~~~-~--------l~~-------- 302 (428)
T TIGR00458 290 -----------------------------------------KGV---------EIGWGE-D--------LST-------- 302 (428)
T ss_pred -----------------------------------------cCC---------CCCCcc-c--------cch--------
Confidence 000 000000 0 000
Q ss_pred HhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCC-CCC
Q psy3762 385 KTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTA-PKD 463 (595)
Q Consensus 385 ~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~-~~~ 463 (595)
..++. +++ ....|+||+|||... +|||+ +.+
T Consensus 303 ------------------~~E~~-------l~~-----------~~~~p~fi~d~P~~~------------~pfy~~~~~ 334 (428)
T TIGR00458 303 ------------------EAEKA-------LGE-----------EMDGLYFITDWPTEI------------RPFYTMPDE 334 (428)
T ss_pred ------------------HHHHH-------HHH-----------HhCCCEEEEeCchhc------------CcccccccC
Confidence 01112 222 125699999999853 89986 443
Q ss_pred CCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHH
Q psy3762 464 GYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLD 543 (595)
Q Consensus 464 ~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlD 543 (595)
++| .++++|||+++|.||+|||+|+||+++|+++++..|++++ .++|||+|++||+|||||||||||
T Consensus 335 -------~~p--~~~~~fdl~~~g~Ei~~g~~r~~~~~~l~~~~~~~g~~~~----~~~~yl~a~~~G~pP~~G~GiGid 401 (428)
T TIGR00458 335 -------DNP--EISKSFDLMYRDLEISSGAQRIHLHDLLVERIKAKGLNPE----GFKDYLEAFSYGMPPHAGWGLGAE 401 (428)
T ss_pred -------CCC--CEEEEEEEEeCCeEEeeCchhcCCHHHHHHHHHHcCCChH----HHHHHHHHHHCCCCCcCceeecHH
Confidence 555 6899999999999999999999999999999999999886 489999999999999999999999
Q ss_pred HHHHHHcCCCCccccccCCCCCCc
Q psy3762 544 RLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 544 RLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
||+|+++|.+|||||++|||+++.
T Consensus 402 RL~m~l~g~~~Irdv~~FPr~~~r 425 (428)
T TIGR00458 402 RFVMFLLGLKNIREAVLFPRDRKR 425 (428)
T ss_pred HHHHHHcCCCchheEEeccCCCCC
Confidence 999999999999999999999953
No 10
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.7e-90 Score=754.67 Aligned_cols=426 Identities=27% Similarity=0.445 Sum_probs=345.6
Q ss_pred ccccccccccccCC----------CEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc--HHHHHHHhcCCCCcEE
Q psy3762 2 RTHYCGNITEKLLD----------QVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND--IKIYKIAKIIRNEFCL 69 (595)
Q Consensus 2 ~t~~~~~l~~~~~g----------~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~--~~~~~~~~~l~~es~V 69 (595)
|||+|+++...+.+ ++|+|+|||+++|.+|+++|++|||++|.+|||++++. .+.++.+++|+.||+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~g~~v 110 (491)
T PRK00484 31 RTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSGRIQLYVSKDDVGEEALEAFKKLDLGDII 110 (491)
T ss_pred CccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCccEEEEEECCcCCHHHHHHHhcCCCCCEE
Confidence 79999999887765 77999999999999999999999999999999998653 3567778889999999
Q ss_pred EEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHHHH
Q psy3762 70 QIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKVTM 147 (595)
Q Consensus 70 ~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i~~ 147 (595)
.|+|+|.++ ++|++||++++++|||+|. ++|+.... ..++++|+++||||+| ++.++++|++||.|++
T Consensus 111 ~v~G~v~~t---------~~ge~el~~~~~~vls~~~~plP~~~~~-~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~ 180 (491)
T PRK00484 111 GVEGTLFKT---------KTGELSVKATELTLLTKSLRPLPDKFHG-LTDVETRYRQRYVDLIVNPESRETFRKRSKIIS 180 (491)
T ss_pred EEEEEEEEc---------CCCcEEEEEeEEEEEeccCCCCCccccc-ccchhhhccceeeehhcCHHHHHHHHHHHHHHH
Confidence 999999986 4689999999999999996 67876654 5678999999999997 8999999999999999
Q ss_pred HHHHHhhhCCCeeccCceeecCCCCCC--ccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCC
Q psy3762 148 EVRKFLDSKKFIEIETPILSKSTPEGA--RDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSD 225 (595)
Q Consensus 148 ~iR~ff~~~gF~EV~TPiL~~~~~~ga--~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~ 225 (595)
++|+||.++||+||+||+|+++ ++|| ++|.+.. .+.+..+||++|||+|||++|++|++||||||||||||+++++
T Consensus 181 ~iR~f~~~~gF~EVeTPiL~~~-~~Ga~a~pF~t~~-~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~r 258 (491)
T PRK00484 181 AIRRFLDNRGFLEVETPMLQPI-AGGAAARPFITHH-NALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDTR 258 (491)
T ss_pred HHHHHHHHCCCEEEECCceecc-CCCccceeeeecc-ccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCCC
Confidence 9999999999999999999865 5554 4565432 2445667899999999999999999999999999999999998
Q ss_pred CCccccccccccccCCHHHHHHHHHHHHHHHHHHHcC----------CCCCCCCccccHHHHHHHhCCCCCccccchhhc
Q psy3762 226 RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLN----------IKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFT 295 (595)
Q Consensus 226 r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~----------~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~ 295 (595)
|+|||||||||++|+|++|+|+++|++++++++.+.+ .++..||+||||.||++.+.+.++.
T Consensus 259 H~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~~i~~~~~~~~~~~pf~rity~eai~~~~g~~~~-------- 330 (491)
T PRK00484 259 HNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTYQGTEIDFGPPFKRLTMVDAIKEYTGVDFD-------- 330 (491)
T ss_pred cCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCceEecCCEeecCCCCceEEEHHHHHHHHhCCCcc--------
Confidence 8889999999999999999999999999999998875 2445699999999999988543221
Q ss_pred chhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccC
Q psy3762 296 DLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFN 375 (595)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 375 (595)
+ ...+.+.++++..+.+- .. + .+
T Consensus 331 ~-------------------------------------~~~~~~~~~~~~~~~~~------~~----------~----~~ 353 (491)
T PRK00484 331 D-------------------------------------MTDEEARALAKELGIEV------EK----------S----WG 353 (491)
T ss_pred c-------------------------------------CCHHHHHHHHHHcCCCC------CC----------C----CC
Confidence 0 00111222222222100 00 0 00
Q ss_pred HHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCcccccccccccc
Q psy3762 376 NLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIAR 454 (595)
Q Consensus 376 ~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~ 454 (595)
. ...+...++. ++ +....|+||+|||..
T Consensus 354 ~------------------------~~l~~~l~~~---------------~ve~~~~~P~Fi~dyP~~------------ 382 (491)
T PRK00484 354 L------------------------GKLINELFEE---------------FVEPKLIQPTFITDYPVE------------ 382 (491)
T ss_pred H------------------------HHHHHHHHHH---------------HhhhhcCCcEEEECCChH------------
Confidence 0 0011111111 11 234579999999985
Q ss_pred ccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc------CCChhhhhhcHHHHHHHh
Q psy3762 455 HHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL------NIDNKIVKTQFGFLLNSL 528 (595)
Q Consensus 455 ~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~------g~~~~~~~~~~~~yL~al 528 (595)
.+|||++++ +|| .++++|||+++|+||+|||+|+|||++|+++|+++ |. ++ .....+|||+|+
T Consensus 383 ~~pf~k~~~-------~~~--~~~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~-~e-~~~~d~~yl~a~ 451 (491)
T PRK00484 383 ISPLAKRHR-------EDP--GLTERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGD-DE-AMFMDEDFLRAL 451 (491)
T ss_pred HhhhhccCC-------CCC--CeEEEEEEEECCEEEecchhhhCCHHHHHHHHHHHHHHHHcCC-Cc-ccccHHHHHHHH
Confidence 399998864 666 68999999999999999999999999999999753 32 22 122347999999
Q ss_pred hCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 529 KYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 529 ~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
+||+|||||||||||||+|++||.+|||||++||+++.
T Consensus 452 ~~G~PP~gG~GiGiDRLvm~ltg~~~Irdvi~FP~~~~ 489 (491)
T PRK00484 452 EYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFPLMRP 489 (491)
T ss_pred HCCCCCCCeEEEeHHHHHHHHhCCCcHHhcccCCCCCC
Confidence 99999999999999999999999999999999999874
No 11
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.2e-89 Score=747.85 Aligned_cols=450 Identities=24% Similarity=0.373 Sum_probs=349.6
Q ss_pred cccccccccc-CCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCC---cHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 4 HYCGNITEKL-LDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPN---DIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 4 ~~~~~l~~~~-~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~---~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
..+.+|+.++ +|++|+|+|||+++|.+|+++|++|||++++||+|+..+ ..++++++..|+.||+|.|+|+|+.++
T Consensus 66 ~~i~~l~~~~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~~iQ~v~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 145 (550)
T PTZ00401 66 IPVAVLSKPELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFIGQIPTESIVDVEATVCKVE 145 (550)
T ss_pred EEHHHCCccccCCCEEEEEEEEEEEecCCCeEEEEEEeCCcCEEEEEECCCccCHHHHHHHhcCCCCCEEEEEEEEEecC
Confidence 4577888777 899999999999999999999999999999999999643 236889999999999999999999864
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc---------CcchhhhccccchhhccHhhHHHHHHHHHHHHHH
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK---------NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEV 149 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~---------~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~i 149 (595)
.. +.++++|++||++++|+|||+|. ++|+.+.+. ..+.++|++|||||+|++.++++|++||.|++++
T Consensus 146 ~~--~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~i~~~~ 223 (550)
T PTZ00401 146 QP--ITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSRVCQYF 223 (550)
T ss_pred cc--CCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 32 23457789999999999999996 689887653 2468999999999999999999999999999999
Q ss_pred HHHhhhCCCeeccCceeecCCCCC-CccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc
Q psy3762 150 RKFLDSKKFIEIETPILSKSTPEG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP 228 (595)
Q Consensus 150 R~ff~~~gF~EV~TPiL~~~~~~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~ 228 (595)
|+||.++||+||+||+|+.++++| +..|.++ +.+..+||+||||+|||+++++|++|||+||||||+|+++|+||+
T Consensus 224 R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~---yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl 300 (550)
T PTZ00401 224 RQFLIDSDFCEIHSPKIINAPSEGGANVFKLE---YFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHL 300 (550)
T ss_pred HHHHHHCCCEEEeCCccccCCCCccccccccc---cCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCc
Confidence 999999999999999999887775 6667665 467889999999999999988999999999999999999998887
Q ss_pred -cccccccccccC-CHHHHHHHHHHHHHHHHHHHcCCCC-------CCCCccc--cHHHHHHHhCCCCCccccchhhcch
Q psy3762 229 -EFTQIDCETSFM-NEEEIRNLFEEMIRVIFYKTLNIKL-------PNPFPVI--EWSTAIKLYGSDKPDMCIKLIFTDL 297 (595)
Q Consensus 229 -EFt~lE~e~~~~-~~~dl~~~~E~ll~~l~~~~~~~~~-------~~~f~ri--ty~ea~~~~~~d~p~lr~~~~~~~~ 297 (595)
|||||||||+|. +++++|+++|+|++++++.+.+..- ..||..+ ++.+++.++.+..+... +
T Consensus 301 ~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~------~- 373 (550)
T PTZ00401 301 TEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGVISE------G- 373 (550)
T ss_pred cchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHccchhhhhhccccccccccccccHHHHHhcCCCcccc------c-
Confidence 999999999986 6899999999999999988765311 1233332 33344443322111000 0
Q ss_pred hhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHH
Q psy3762 298 TNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNL 377 (595)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (595)
+ ...+.+.+.++..+. +..+ ++..
T Consensus 374 ---------------------------------~--~~~~~l~~~~~~~~~--------------------~~~r-l~y~ 397 (550)
T PTZ00401 374 ---------------------------------V--EPTDKYQARVHNMDS--------------------RMLR-INYM 397 (550)
T ss_pred ---------------------------------c--cchHHHHHHHHhcCC--------------------Cccc-ccHH
Confidence 0 000111111111110 0000 1112
Q ss_pred HHHHHHHHhc---CcCCCeEEecCCchhhHHHHHHHH-HHHhcccCcccccccccCCCccEEEEe-cCCCcccccccccc
Q psy3762 378 ILEKIINKTE---AQNGDIIFLGGDEKNIVNNFMSAL-RIKIGYSDFGKRNNILNNKWHPLWVIN-FPMFKYDKINNNWI 452 (595)
Q Consensus 378 ~~~~l~~~~~---~~~gd~~~~~~~~~~~~~~~lg~~-r~~l~~~~~~~~~~l~~~~~~p~~V~d-fP~~~~~~~~~~~~ 452 (595)
+...+++..+ ...|+ +.....++.||.+ ++ ....|+||+| ||..
T Consensus 398 eai~lL~~~~~~~~~~~~------dl~~~~E~~L~~~v~~---------------~~~~~~fI~d~yP~~---------- 446 (550)
T PTZ00401 398 HCIELLNTVLEEKMAPTD------DINTTNEKLLGKLVKE---------------RYGTDFFISDRFPSS---------- 446 (550)
T ss_pred HHHHHHHHhcccCCCccc------ccCchHHHHHHHHHHH---------------hcCCCEEEECCCChh----------
Confidence 2223333321 11111 1222344566653 22 2345899998 9985
Q ss_pred ccccCCC-CCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCC
Q psy3762 453 ARHHPFT-APKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYG 531 (595)
Q Consensus 453 a~~~PF~-~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G 531 (595)
.+||| |+.+ +|| .++++|||+++|.||+|||+|+|||++|+++|+..|++++ .++|||+|++||
T Consensus 447 --~rpFY~~~~~-------~dp--~~s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~~~G~d~~----~~~~Yl~a~~~G 511 (550)
T PTZ00401 447 --ARPFYTMECK-------DDE--RFTNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDLT----PIKEYVDSFRLG 511 (550)
T ss_pred --hCchhcCcCC-------CCC--CEEEEEEEEeCCEEEccchhhcCCHHHHHHHHHHcCCCch----hhHHHHHHHHcC
Confidence 39997 5654 566 6899999999999999999999999999999999999986 589999999999
Q ss_pred CCCccceeccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 532 APPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 532 ~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
+|||||||||||||+|+++|++|||||++|||+++.
T Consensus 512 ~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~r 547 (550)
T PTZ00401 512 AWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQR 547 (550)
T ss_pred CCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCCC
Confidence 999999999999999999999999999999999963
No 12
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=3.7e-88 Score=741.01 Aligned_cols=410 Identities=24% Similarity=0.397 Sum_probs=336.2
Q ss_pred ccCCCEEEEEEEEEeEeccC--CeEEEEEEeCCe--eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCC-
Q psy3762 12 KLLDQVISLCGWVHRKRNHG--GIIFIDLRDYTG--LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTN- 86 (595)
Q Consensus 12 ~~~g~~V~i~GwV~~~R~~g--~l~Fi~LrD~~g--~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~- 86 (595)
.++|++|+|+|||+++|.+| +++|++||||+| .+|||+++. .+.++.+.+|+.||+|.|+|+|+.++....|+.
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~-~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~n~~g 156 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQS-IENYEKLLKCGVGCCFRFTGKLIISPVQNENKKG 156 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCc-hHHHHHHhcCCCccEEEEEEEEEcCCccccCcCC
Confidence 46899999999999999998 499999999998 599999765 345667788999999999999998876543432
Q ss_pred cCCccEEEEE-----eeEEEeecC-CCCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCee
Q psy3762 87 LISGNIEILC-----RELKILNSS-ITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIE 160 (595)
Q Consensus 87 ~~~g~iEl~v-----~~i~vls~~-~~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~E 160 (595)
+.+|++||.+ .+++||+.+ ++.|||+.++..+.++++++||||+|++.++++||+||.+..++|+||.++||+|
T Consensus 157 ~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF~e 236 (586)
T PTZ00425 157 LLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLY 236 (586)
T ss_pred CCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 3468899998 799999998 4678888776667888888999999999999999999999999999999999999
Q ss_pred ccCceeecCCCCCCcc-cccccc---------------------------------------------------------
Q psy3762 161 IETPILSKSTPEGARD-YLVPSR--------------------------------------------------------- 182 (595)
Q Consensus 161 V~TPiL~~~~~~ga~~-f~~~~~--------------------------------------------------------- 182 (595)
|+||+|++++||||++ |.+++.
T Consensus 237 I~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 316 (586)
T PTZ00425 237 IHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLID 316 (586)
T ss_pred eeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998 877543
Q ss_pred ---CCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccccccCCHHHHHHHHHHHHHHHHH
Q psy3762 183 ---INPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFMNEEEIRNLFEEMIRVIFY 258 (595)
Q Consensus 183 ---~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~ 258 (595)
.|.++..||++|||||+|++ ++|++|||+||||||||+++++||+ ||||||+||+|++++++|+++|++|+++++
T Consensus 317 ~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~ 395 (586)
T PTZ00425 317 YKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIG 395 (586)
T ss_pred ccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 23446679999999999986 6889999999999999999999998 999999999999999999999999999999
Q ss_pred HHcCCCC----------------------CCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhcc
Q psy3762 259 KTLNIKL----------------------PNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMK 316 (595)
Q Consensus 259 ~~~~~~~----------------------~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (595)
.+++.+. ..||+||||.||++....
T Consensus 396 ~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~--------------------------------- 442 (586)
T PTZ00425 396 YVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQP--------------------------------- 442 (586)
T ss_pred HHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHH---------------------------------
Confidence 8865321 135666666666543200
Q ss_pred CCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEe
Q psy3762 317 NGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFL 396 (595)
Q Consensus 317 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~ 396 (595)
..+.++. +..||. ++ +.+.
T Consensus 443 -------------------------~~~~~~~---------~~~~G~-dL--------~~e~------------------ 461 (586)
T PTZ00425 443 -------------------------YSDSFEV---------PVKWGM-DL--------QSEH------------------ 461 (586)
T ss_pred -------------------------hHHhcCC---------CCCccc-cc--------chHH------------------
Confidence 0000000 001111 01 1111
Q ss_pred cCCchhhHHHHHHHHHHHhcccCcccccccccC-CCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCccc
Q psy3762 397 GGDEKNIVNNFMSALRIKIGYSDFGKRNNILNN-KWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEK 475 (595)
Q Consensus 397 ~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~-~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~ 475 (595)
++. ++. . ...|+||+|||.. .+||||..+ +|+
T Consensus 462 --------Er~-------L~~-----------~~~~~PvFItdyP~~------------~kPFY~~~~-------~d~-- 494 (586)
T PTZ00425 462 --------ERF-------VAE-----------QIFKKPVIVYNYPKD------------LKAFYMKLN-------EDQ-- 494 (586)
T ss_pred --------HHH-------HHH-----------HhcCCcEEEECCccc------------cCccccCcC-------CCC--
Confidence 011 121 1 2469999999985 399999764 343
Q ss_pred cccceeeEEecCE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCC
Q psy3762 476 IFSKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554 (595)
Q Consensus 476 ~~~~~fDl~~~G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~ 554 (595)
..+.+|||+++|+ ||+|||+|+|+++.+.+++++.|++++ .|+|||++++||+|||||||||||||+|++||.+|
T Consensus 495 ~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e----~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~n 570 (586)
T PTZ00425 495 KTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNME----SYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDN 570 (586)
T ss_pred CeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChh----HHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCc
Confidence 4679999999986 999999999999999999999999987 59999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccc
Q psy3762 555 IRDVIAFPKTQSAQC 569 (595)
Q Consensus 555 IRdvi~FPr~~~~~~ 569 (595)
||||++|||++ |.|
T Consensus 571 IRDvi~FPR~~-g~~ 584 (586)
T PTZ00425 571 IKDTIPFPRYP-GHA 584 (586)
T ss_pred hheEEECcCCC-CcC
Confidence 99999999999 444
No 13
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-87 Score=735.26 Aligned_cols=428 Identities=25% Similarity=0.454 Sum_probs=341.2
Q ss_pred ccccccccccc----------cCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--HHHH-HHhcCCCCcE
Q psy3762 2 RTHYCGNITEK----------LLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYK-IAKIIRNEFC 68 (595)
Q Consensus 2 ~t~~~~~l~~~----------~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~~~~-~~~~l~~es~ 68 (595)
+||++.++... ..|++|+|+|||+++|.+||++|++|||++|.+|||++++.. +.+. .+.+++.||+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g~iQ~~~~~~~~~~~~~~~~~~~l~~Gd~ 121 (505)
T PRK12445 42 RDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDI 121 (505)
T ss_pred CccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCccEEEEEECCccchhhHHHHHhcCCCCCE
Confidence 57888777543 236789999999999999999999999999999999986532 3343 4678999999
Q ss_pred EEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHHH
Q psy3762 69 LQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKVT 146 (595)
Q Consensus 69 V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i~ 146 (595)
|.|+|+|.++ ++|++||+|++++|||+|. ++|..+.+ ..+.++|+++||||+| ++..+++|++||.|+
T Consensus 122 V~v~G~~~~t---------~~gelel~~~~~~llsk~~~plP~~~~~-~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~ 191 (505)
T PRK12445 122 IGARGTLFKT---------QTGELSIHCTELRLLTKALRPLPDKFHG-LQDQEVRYRQRYLDLIANDKSRQTFVVRSKIL 191 (505)
T ss_pred EEEEEEEEec---------CCCcEEEEEeEEEEEecCCCCCCccccc-ccChhhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 9999999875 4689999999999999996 67877655 5679999999999999 699999999999999
Q ss_pred HHHHHHhhhCCCeeccCceeecCCCCCC--ccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCC
Q psy3762 147 MEVRKFLDSKKFIEIETPILSKSTPEGA--RDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRS 224 (595)
Q Consensus 147 ~~iR~ff~~~gF~EV~TPiL~~~~~~ga--~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~ 224 (595)
+++|+||.++||+||+||+|++. ++|| ++|.+. ..+.+..+||++|||+|+|+++++|++||||||||||||++++
T Consensus 192 ~~iR~f~~~~gFiEVeTPiL~~~-~gGa~a~pF~t~-~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~~~ 269 (505)
T PRK12445 192 AAIRQFMVARGFMEVETPMMQVI-PGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV 269 (505)
T ss_pred HHHHHHHHHCCCEEeeCCeeEec-CCCCcccceecc-cccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCCCC
Confidence 99999999999999999999865 5564 345332 2234566889999999999999999999999999999999988
Q ss_pred CCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC----------CCCCCCccccHHHHHHHhCCC-CCccccchh
Q psy3762 225 DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI----------KLPNPFPVIEWSTAIKLYGSD-KPDMCIKLI 293 (595)
Q Consensus 225 ~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~----------~~~~~f~rity~ea~~~~~~d-~p~lr~~~~ 293 (595)
+|+|||||||||++|+|++|+|+++|+||++++..+++. ++..||+|+||.||++.+.+. ++.
T Consensus 270 rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~~~~~~~------ 343 (505)
T PRK12445 270 RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMA------ 343 (505)
T ss_pred CcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHhCCCCcc------
Confidence 888899999999999999999999999999999988642 344699999999999998541 110
Q ss_pred hcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccc
Q psy3762 294 FTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKY 373 (595)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 373 (595)
+ ....+.+.++++..|.+- .. .++
T Consensus 344 -----~---------------------------------~~~~~~~~~~~~~~~~~~------~~-~~~----------- 367 (505)
T PRK12445 344 -----D---------------------------------LDNFDAAKALAESIGITV------EK-SWG----------- 367 (505)
T ss_pred -----c---------------------------------cCCHHHHHHHHHHcCCCC------CC-CCC-----------
Confidence 0 001223333343333110 00 000
Q ss_pred cCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccc
Q psy3762 374 FNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIA 453 (595)
Q Consensus 374 ~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a 453 (595)
. ...+....+. +.+ +....|+||+|||..
T Consensus 368 -----~---------------------~~l~~~~~~~----~vE----------~~l~~P~Fv~dyP~~----------- 396 (505)
T PRK12445 368 -----L---------------------GRIVTEIFDE----VAE----------AHLIQPTFITEYPAE----------- 396 (505)
T ss_pred -----H---------------------HHHHHHHHHH----HHH----------hhcCCCEEEECCCch-----------
Confidence 0 0011111111 111 223579999999985
Q ss_pred cccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc------CCChhhhhhcHHHHHHH
Q psy3762 454 RHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL------NIDNKIVKTQFGFLLNS 527 (595)
Q Consensus 454 ~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~------g~~~~~~~~~~~~yL~a 527 (595)
.+|||++.+ +|| .+++||||+++|+||+|||+|+|||++|+++|+.+ |.++. ....+|||+|
T Consensus 397 -~splak~~~-------~~p--~~~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~--~~~de~yl~a 464 (505)
T PRK12445 397 -VSPLARRND-------VNP--EITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEA--MFYDEDYVTA 464 (505)
T ss_pred -hCcccccCC-------CCC--CceEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCcc--ccchHHHHHH
Confidence 399998754 566 68999999999999999999999999999999853 54432 2245799999
Q ss_pred hhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 528 LKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 528 l~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
++||+|||||||||||||+|++||.+||||||+||+++.
T Consensus 465 l~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 465 LEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred HHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 999999999999999999999999999999999999874
No 14
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=1.1e-87 Score=739.37 Aligned_cols=430 Identities=29% Similarity=0.424 Sum_probs=340.4
Q ss_pred ccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc----HHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND----IKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~----~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
..|++|+.++.|++|+|+|||+++|.+|+++|++|||++++||+|+..+. .++++++..|+.||+|.|+|+|+.++
T Consensus 70 ~~i~~l~~~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 149 (530)
T PLN02850 70 TDVSDLGEELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPK 149 (530)
T ss_pred eEhhhcchhhCCCEEEEEEEEEEEccCCCeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEccC
Confidence 56899999999999999999999999999999999999999999997542 36889999999999999999998654
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc------------------CcchhhhccccchhhccHhhHHHHH
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK------------------NILEVTNLKYRVLYLRYKHMQKNLR 140 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~------------------~~~~~~r~~~r~l~lr~~~~~~~l~ 140 (595)
.. +. ..++++||++++|+|+|+|. ++|+.+++. ..+.++|++|||||+|++.++++|+
T Consensus 150 ~~-~~--~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaifr 226 (530)
T PLN02850 150 KP-VK--GTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFR 226 (530)
T ss_pred cC-CC--CCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHHH
Confidence 32 11 24579999999999999995 689887652 2457899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCeeccCceeecCCCCC-CccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceec
Q psy3762 141 LRYKVTMEVRKFLDSKKFIEIETPILSKSTPEG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRD 219 (595)
Q Consensus 141 ~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~ 219 (595)
+||.|++++|+||.++||+||+||+|+.++++| +..|.+. +.+..+||+||||+|||+++++|++|||+|||||||
T Consensus 227 irs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~---yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRa 303 (530)
T PLN02850 227 IQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLD---YKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRA 303 (530)
T ss_pred HHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeeec---cCCcceecCCCHHHHHHHHHHhcCCceEEEeccccc
Confidence 999999999999999999999999999888876 4456654 567889999999999999999999999999999999
Q ss_pred CCCCCCCCc-cccccccccccC-CHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcch
Q psy3762 220 EDLRSDRQP-EFTQIDCETSFM-NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDL 297 (595)
Q Consensus 220 E~~~~~r~~-EFt~lE~e~~~~-~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~ 297 (595)
|+++++||+ |||||||||+|. +++|+|+++|+|+++++..+.+.+- +.++..+...|
T Consensus 304 E~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~----------~el~~i~~~~~----------- 362 (530)
T PLN02850 304 EDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCK----------KELEAIREQYP----------- 362 (530)
T ss_pred CCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhh----------hhHHhhcccCC-----------
Confidence 999999998 999999999988 4899999999999999987764321 11111111000
Q ss_pred hhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHH
Q psy3762 298 TNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNL 377 (595)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (595)
|..+ .+. ..+.+...+++.++++..|
T Consensus 363 --------~~~~--------------~~~--~~~~rit~~ea~~~L~~~g------------------------------ 388 (530)
T PLN02850 363 --------FEPL--------------KYL--PKTLRLTFAEGIQMLKEAG------------------------------ 388 (530)
T ss_pred --------cchh--------------hhc--CCcccCCHHHHHHHHHHcC------------------------------
Confidence 0000 000 0011122222323332222
Q ss_pred HHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHH-HHHhcccCcccccccccCCCccEEEEecCCCcccccccccccccc
Q psy3762 378 ILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSAL-RIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHH 456 (595)
Q Consensus 378 ~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~-r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~ 456 (595)
.+..+ ..+.....++.||.+ +..++ ..|+||+|||.. .+
T Consensus 389 ----------~~~~~----~~dl~~~~E~~Lg~~v~~~~~--------------~~~~ii~~yP~~------------~~ 428 (530)
T PLN02850 389 ----------VEVDP----LGDLNTESERKLGQLVKEKYG--------------TDFYILHRYPLA------------VR 428 (530)
T ss_pred ----------CCCCC----CCCcchHHHHHHHHHHHHhcC--------------CCeEEEECCccc------------cC
Confidence 11000 001112234555553 22221 236778999985 39
Q ss_pred CCC-CCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCc
Q psy3762 457 PFT-APKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPH 535 (595)
Q Consensus 457 PF~-~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh 535 (595)
||| |+.+ +|| .++++|||+++|.||+|||+|+|||++|+++++..|++++ .++|||+|++||+|||
T Consensus 429 pfY~~~~~-------~d~--~~~~~fDl~i~G~EI~~G~qr~~d~~~l~~r~~~~g~d~~----~~~~Yl~a~~~G~pPh 495 (530)
T PLN02850 429 PFYTMPCP-------DDP--KYSNSFDVFIRGEEIISGAQRVHDPELLEKRAEECGIDVK----TISTYIDSFRYGAPPH 495 (530)
T ss_pred chhccccC-------CCC--CeEEEEEEEeCCEEEeccceecCCHHHHHHHHHHcCCChH----HHHHHHHHHHcCCCCC
Confidence 997 5553 566 6899999999999999999999999999999999999987 4799999999999999
Q ss_pred cceeccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 536 GGIAFGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 536 ~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
||||||||||+|+++|++|||||++|||+++.
T Consensus 496 gG~GiGlERLvM~l~g~~nIr~v~~FPR~p~r 527 (530)
T PLN02850 496 GGFGVGLERVVMLFCGLNNIRKTSLFPRDPQR 527 (530)
T ss_pred ceEEEcHHHHHHHHcCCCchheEeecCCCCCC
Confidence 99999999999999999999999999999963
No 15
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=2.6e-87 Score=733.68 Aligned_cols=429 Identities=27% Similarity=0.482 Sum_probs=338.4
Q ss_pred ccccccccccc----------cCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--HHHHHHhc-CCCCcE
Q psy3762 2 RTHYCGNITEK----------LLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYKIAKI-IRNEFC 68 (595)
Q Consensus 2 ~t~~~~~l~~~----------~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~~~~~~~~-l~~es~ 68 (595)
++|++.++... ..|++|+|+|||+++|.+||++|++|+|++|.+|+|++.+.. +.++.... |+.||+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g~iQ~~~~~~~~~~~~~~~~~~~l~~gd~ 109 (496)
T TIGR00499 30 RTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESGQIQLYVNKDDLPEDFYEFDEYLLDLGDI 109 (496)
T ss_pred CCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCccEEEEEECCcCcHHHHHHHHhcCCCCCE
Confidence 46777776432 237789999999999999999999999999999999986532 45666654 899999
Q ss_pred EEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHHH
Q psy3762 69 LQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKVT 146 (595)
Q Consensus 69 V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i~ 146 (595)
|.|+|++.++ ++|++||+++++++||+|. ++|....+ ..+.++|+++||||+| ++..+++|++||.|+
T Consensus 110 V~v~G~~~~t---------~~gelel~~~~i~ilsk~~~plP~k~~~-~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~ 179 (496)
T TIGR00499 110 IGVTGYPFKT---------KTGELSVHVTELQILTKALRPLPDKFHG-LTDQETRYRQRYLDLIVNPDSRQTFLVRSKII 179 (496)
T ss_pred EEEEEEEEEC---------CCCcEEEEeeEEEEEecCCCCCCccccc-cCChhhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 9999999875 4689999999999999996 67776655 5678999999999999 689999999999999
Q ss_pred HHHHHHhhhCCCeeccCceeecCCCCCC--ccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCC
Q psy3762 147 MEVRKFLDSKKFIEIETPILSKSTPEGA--RDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRS 224 (595)
Q Consensus 147 ~~iR~ff~~~gF~EV~TPiL~~~~~~ga--~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~ 224 (595)
+++|+||.++||+||+||+|+++. +|| ++|.+... ..+..+||++|||||+|+++++|++|||+||||||||++++
T Consensus 180 ~~iR~fl~~~gF~EVeTP~L~~~~-gga~a~pF~t~~~-~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~~ 257 (496)
T TIGR00499 180 KAIRRFLDDRGFIEVETPMLQVIP-GGANARPFITHHN-ALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDT 257 (496)
T ss_pred HHHHHHHHHCcCEEEeCCeeecCC-CCccceeEEeecc-cCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCCC
Confidence 999999999999999999999764 454 45654432 24566789999999999999999999999999999999999
Q ss_pred CCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcC----------CCCCCCCccccHHHHHHHhC---CCCCccccc
Q psy3762 225 DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLN----------IKLPNPFPVIEWSTAIKLYG---SDKPDMCIK 291 (595)
Q Consensus 225 ~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~----------~~~~~~f~rity~ea~~~~~---~d~p~lr~~ 291 (595)
+|+|||||||||++|+|++|+|+++|+||++++..+.+ .++..||+|+||.||++.++ +.+.+
T Consensus 258 rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~~~~~~~~~pf~rit~~eai~~~~~~~g~~~~---- 333 (496)
T TIGR00499 258 THNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEAIKKYDMETGIDFD---- 333 (496)
T ss_pred cccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHHHhcCCCch----
Confidence 88889999999999999999999999999999998863 23456999999999999442 21110
Q ss_pred hhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccc
Q psy3762 292 LIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPII 371 (595)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 371 (595)
+ + ...+.+.++++..|.+- . ..+
T Consensus 334 ----~----~--------------------------------~~~~~l~~~~~~~~~~~------~---------~~~-- 356 (496)
T TIGR00499 334 ----D----L--------------------------------KDFETAKALAKKIGIEV------A---------EKS-- 356 (496)
T ss_pred ----h----c--------------------------------CCHHHHHHHHHHcCCCc------C---------CCC--
Confidence 0 0 01122223333322100 0 000
Q ss_pred cccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccc
Q psy3762 372 KYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNW 451 (595)
Q Consensus 372 ~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~ 451 (595)
.+ . ...+....+. .+. +....|+||+|||...
T Consensus 357 --~~---~---------------------~~~l~~~~~~---~ve-----------~~l~~P~fv~dyP~~~-------- 388 (496)
T TIGR00499 357 --LT---L---------------------GHILNELFEQ---FLE-----------HTLIQPTFITHYPAEI-------- 388 (496)
T ss_pred --CC---H---------------------HHHHHHHHHH---HHH-----------hccCCCEEEECCchhc--------
Confidence 00 0 0011111111 011 2345799999999853
Q ss_pred cccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHH------cCCChhhhhhcHHHHH
Q psy3762 452 IARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKV------LNIDNKIVKTQFGFLL 525 (595)
Q Consensus 452 ~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~------~g~~~~~~~~~~~~yL 525 (595)
+||+++.+ +|| .+++||||+++|+||+|||+|+|||++|+++|+. .|.+++. ..++|||
T Consensus 389 ----splak~~~-------~~p--~~~~rFeL~i~G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~--~~de~yl 453 (496)
T TIGR00499 389 ----SPLAKRNP-------SNP--EFTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQ--FVDEDFV 453 (496)
T ss_pred ----CcccccCC-------CCC--CeEEEEEEEeCCeEEeccccccCCHHHHHHHHHHHHHHHHcCCCccc--cchHHHH
Confidence 89977654 666 6899999999999999999999999999999863 4555432 2247999
Q ss_pred HHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 526 NSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 526 ~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
+|++||+|||||||||||||+|++||.+||||||+||+...
T Consensus 454 ~a~~~G~PP~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 454 EALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred HHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 99999999999999999999999999999999999999873
No 16
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.1e-87 Score=739.36 Aligned_cols=413 Identities=21% Similarity=0.329 Sum_probs=334.5
Q ss_pred ccccccccc------cccCCCEEEEEEEEEeEeccCCeEEEEEEeCCe--eEEEEECCCcHHHHHHHhc--CCCCcEEEE
Q psy3762 2 RTHYCGNIT------EKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTG--LVQIVFDPNDIKIYKIAKI--IRNEFCLQI 71 (595)
Q Consensus 2 ~t~~~~~l~------~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g--~lQvv~~~~~~~~~~~~~~--l~~es~V~V 71 (595)
++++|.++. ..++|++|+|+|||+++|.+|+++|++|+|+++ .||||++++. ..++.+.. |+.||+|.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~-~~~~~l~~~~l~~gs~V~V 166 (565)
T PLN02603 88 KKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDA-EGYDQVESGLITTGASVLV 166 (565)
T ss_pred CceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcH-HHHHHHhhcCCCCCCEEEE
Confidence 346788876 267899999999999999999999999999997 5999997653 34555554 999999999
Q ss_pred EeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCCCCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHH
Q psy3762 72 IGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRK 151 (595)
Q Consensus 72 ~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ 151 (595)
+|+|+.++. ..+.+||++++++|||+|++ |||+..+..+.+.+..++|||+|++.+++++++||.++.++|+
T Consensus 167 ~G~v~~~~~-------~~~~~EL~v~~i~vlg~a~~-~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ 238 (565)
T PLN02603 167 QGTVVSSQG-------GKQKVELKVSKIVVVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 238 (565)
T ss_pred EEEEEecCC-------CCccEEEEEeEEEEEECCCC-CCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 999998753 24679999999999999974 5555544455666668999999999999999999999999999
Q ss_pred HhhhCCCeeccCceeecCCCCCCcc-cccccc---------------------------CCCCCeeeccCChHHHHHHHH
Q psy3762 152 FLDSKKFIEIETPILSKSTPEGARD-YLVPSR---------------------------INPGEFFALPQSPQLFKQLLM 203 (595)
Q Consensus 152 ff~~~gF~EV~TPiL~~~~~~ga~~-f~~~~~---------------------------~~~~~~~~L~~Spql~~q~ll 203 (595)
||.++||+||+||+|++++||||++ |.+++. .+.|+..||++|||||+|++
T Consensus 239 ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~- 317 (565)
T PLN02603 239 FFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETY- 317 (565)
T ss_pred HHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHH-
Confidence 9999999999999999999999887 655431 23445569999999999995
Q ss_pred hhCCCceEEEecceecCCCCCCCCc-cccccccccccCCHHHHHHHHHHHHHHHHHHHcCCC------------------
Q psy3762 204 VANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIK------------------ 264 (595)
Q Consensus 204 ~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~------------------ 264 (595)
++|++|||+||||||||+++++||+ ||||||+||+|++++|+|+++|++++++++.+++.+
T Consensus 318 ~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~ 397 (565)
T PLN02603 318 ATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDR 397 (565)
T ss_pred HhcccceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHH
Confidence 7899999999999999999999998 999999999999999999999999999999887532
Q ss_pred ----CCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHH
Q psy3762 265 ----LPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYT 340 (595)
Q Consensus 265 ----~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 340 (595)
+..||+||||.||++..
T Consensus 398 l~~~~~~~f~rity~EAi~iL----------------------------------------------------------- 418 (565)
T PLN02603 398 LSDVVEKNFVQLSYTDAIELL----------------------------------------------------------- 418 (565)
T ss_pred HHHhcCCCCCCCCHHHHHHHH-----------------------------------------------------------
Confidence 01255666666655432
Q ss_pred HHHHHhCCCCceEEEEe-ccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccC
Q psy3762 341 QFVKTYGAKGLTYIKIH-KISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSD 419 (595)
Q Consensus 341 ~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~ 419 (595)
++.+.+ +. ...||. +++++.++ . |++.+
T Consensus 419 ---~~~~~~------~~~~~~~g~-dl~~e~Er----------------------------------~-------L~~~~ 447 (565)
T PLN02603 419 ---LKAKKK------FEFPVKWGL-DLQSEHER----------------------------------Y-------ITEEA 447 (565)
T ss_pred ---HHhccc------cCCCCCccc-cccHHHHH----------------------------------H-------HHHHh
Confidence 111000 00 011221 12221111 1 11100
Q ss_pred cccccccccCCCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCccccccceeeEEecCE-EEeecccccC
Q psy3762 420 FGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGW-EIGGGSIRIH 498 (595)
Q Consensus 420 ~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~-Ei~gGs~R~~ 498 (595)
....|+||+|||.. .+||||+.+ +|| ..+++|||+++|+ ||+||++|+|
T Consensus 448 ---------~~~~PvfVtdyP~~------------ikpFYm~~~-------~d~--~~v~~fDLl~p~~gEl~gGsqRe~ 497 (565)
T PLN02603 448 ---------FGGRPVIIRDYPKE------------IKAFYMREN-------DDG--KTVAAMDMLVPRVGELIGGSQREE 497 (565)
T ss_pred ---------ccCCCEEEECCccc------------cCccccccC-------CCC--CeeEEEEEEecCceEecCHHHHHh
Confidence 01369999999985 399999875 454 5678999999998 9999999999
Q ss_pred CHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCCccc
Q psy3762 499 DAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQC 569 (595)
Q Consensus 499 d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~~~ 569 (595)
+++++.+++++.|++++ .|+|||++++||+|||||||||||||+|+++|.+|||||++|||++ |.|
T Consensus 498 r~e~L~~~~~e~g~~~e----~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~-g~~ 563 (565)
T PLN02603 498 RLEYLEARLDELKLNKE----SYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVP-GSA 563 (565)
T ss_pred hHHHHHHHHHHcCCCHH----HHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCC-CCC
Confidence 99999999999999987 5999999999999999999999999999999999999999999999 554
No 17
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=8.4e-87 Score=732.73 Aligned_cols=432 Identities=25% Similarity=0.432 Sum_probs=342.2
Q ss_pred ccccccccccc---------cCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH----HHHHHH-hcCCCCc
Q psy3762 2 RTHYCGNITEK---------LLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI----KIYKIA-KIIRNEF 67 (595)
Q Consensus 2 ~t~~~~~l~~~---------~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~----~~~~~~-~~l~~es 67 (595)
+||+|+++... ..|++|+|+|||+++|.+|+++|++|||++|.||||+..+.. +.+..+ ..|+.||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gd 165 (553)
T PLN02502 86 VTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVDRGD 165 (553)
T ss_pred CCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCccEEEEEECccccchhHHHHHHHhCCCCCc
Confidence 68899888543 367889999999999999999999999999999999976532 224444 4699999
Q ss_pred EEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHH
Q psy3762 68 CLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKV 145 (595)
Q Consensus 68 ~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i 145 (595)
+|.|+|++.++ ++|++||.+++++|||+|. ++|..... ..+.++|+++||||++ ++..+++|++||.|
T Consensus 166 iV~V~G~~~~t---------~~gelel~~~~i~vLs~~l~plP~k~~~-~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i 235 (553)
T PLN02502 166 IVGVTGTPGKT---------KKGELSIFPTSFEVLTKCLLMLPDKYHG-LTDQETRYRQRYLDLIANPEVRDIFRTRAKI 235 (553)
T ss_pred EEEEEEEEEec---------CCCCEEEEEeEEEEEeccCCCCCccccc-ccchhhhccchhhhhhcCHHHHHHHHHHHHH
Confidence 99999999876 4689999999999999996 67766544 5778999999999995 89999999999999
Q ss_pred HHHHHHHhhhCCCeeccCceeecCCCCCC--ccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCC
Q psy3762 146 TMEVRKFLDSKKFIEIETPILSKSTPEGA--RDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLR 223 (595)
Q Consensus 146 ~~~iR~ff~~~gF~EV~TPiL~~~~~~ga--~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~ 223 (595)
+++||+||.++||+||+||+|+++. +|| ++|.+. ..+.+..+||++|||||+|+++++|++|||+||||||||+++
T Consensus 236 ~~~iR~fl~~~gF~EVeTPiL~~~~-gGA~a~pF~t~-~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~ 313 (553)
T PLN02502 236 ISYIRRFLDDRGFLEVETPMLNMIA-GGAAARPFVTH-HNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGIS 313 (553)
T ss_pred HHHHHHHHHHCCCEEEECCeeeccC-CCccccceeee-cccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCC
Confidence 9999999999999999999999764 454 345432 234566789999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC----------CCCCCCccccHHHHHHHhCCCCCccccchh
Q psy3762 224 SDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI----------KLPNPFPVIEWSTAIKLYGSDKPDMCIKLI 293 (595)
Q Consensus 224 ~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~----------~~~~~f~rity~ea~~~~~~d~p~lr~~~~ 293 (595)
++|+|||||||||++|+|++|+|+++|+||+++++.+.+. ++..||+|+||.||++.+.+.++..
T Consensus 314 ~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~----- 388 (553)
T PLN02502 314 TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFPA----- 388 (553)
T ss_pred CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCccccCCCCceeccHHHHHHHHhCCCCCc-----
Confidence 9888899999999999999999999999999999988642 3456999999999999985432210
Q ss_pred hcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccch-hhhHHHHHHHHHhCCCCceEEEEeccccccCCCCccccc
Q psy3762 294 FTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISR-NEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIK 372 (595)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 372 (595)
+ ++. ...+.+.++++..+.+ +..+.
T Consensus 389 --~----------------------------------~~~~~~~~~l~~~~~~~~~~----------------~~~~~-- 414 (553)
T PLN02502 389 --D----------------------------------LKSDEANAYLIAACEKFDVK----------------CPPPQ-- 414 (553)
T ss_pred --C----------------------------------CCHHHHHHHHHHHHHHcCCC----------------CCCCC--
Confidence 0 000 0011122223222210 00000
Q ss_pred ccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCcccccccccc
Q psy3762 373 YFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWI 452 (595)
Q Consensus 373 ~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~ 452 (595)
.....+..+++.+ +. +....|+||+|||...
T Consensus 415 --------------------------~~~~~l~~l~~~~---ve-----------~~l~~PtFV~dyP~~~--------- 445 (553)
T PLN02502 415 --------------------------TTGRLLNELFEEF---LE-----------ETLVQPTFVLDHPVEM--------- 445 (553)
T ss_pred --------------------------CHhHHHHHHHHHH---HH-----------hhcCCCEEEECCcccc---------
Confidence 0001111222221 11 2345799999999853
Q ss_pred ccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc----CCChhhhhhcHHHHHHHh
Q psy3762 453 ARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL----NIDNKIVKTQFGFLLNSL 528 (595)
Q Consensus 453 a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~----g~~~~~~~~~~~~yL~al 528 (595)
.||++++. +|| .+++||||+++|+||+|||+|+|||.+|+++|+.+ +...++.....++||+|+
T Consensus 446 ---splak~~~-------~~p--~~~erFELfi~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~al 513 (553)
T PLN02502 446 ---SPLAKPHR-------SKP--GLTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTAL 513 (553)
T ss_pred ---CcccccCC-------CCC--CeEEEEEEEeCCeEEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHH
Confidence 99999875 677 68999999999999999999999999999999753 333333344567899999
Q ss_pred hCCCCCccceeccHHHHHHHHcCCCCccccccCCCCC
Q psy3762 529 KYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQ 565 (595)
Q Consensus 529 ~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~ 565 (595)
+||+|||||||||||||+|+|||.+||||||+||+..
T Consensus 514 eyGmPP~gG~GiGiDRLvMlltg~~sIrdVi~FP~~k 550 (553)
T PLN02502 514 EYGLPPTGGWGLGIDRLVMLLTDSASIRDVIAFPAMK 550 (553)
T ss_pred HcCCCCCceEEehHHHHHHHHcCCcchheeecCCcCC
Confidence 9999999999999999999999999999999999876
No 18
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=1.1e-86 Score=723.02 Aligned_cols=401 Identities=25% Similarity=0.407 Sum_probs=329.0
Q ss_pred ccCCCEEEEEEEEEeEeccCCeEEEEEEeCC--eeEEEEECCCc-HHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcC
Q psy3762 12 KLLDQVISLCGWVHRKRNHGGIIFIDLRDYT--GLVQIVFDPND-IKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLI 88 (595)
Q Consensus 12 ~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~--g~lQvv~~~~~-~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~ 88 (595)
.++|++|+|+|||+++|.+|+++|++|||++ |.+|||++++. .++++.++.|+.||+|.|+|+|++++. .
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~~-------~ 85 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTGKVVESPG-------K 85 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEEEEEEcCCC-------C
Confidence 6789999999999999999999999999999 89999998763 356788899999999999999998653 3
Q ss_pred CccEEEEEeeEEEeecCC--CCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCcee
Q psy3762 89 SGNIEILCRELKILNSSI--TLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPIL 166 (595)
Q Consensus 89 ~g~iEl~v~~i~vls~~~--~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL 166 (595)
+|++||.+++++|||+|. ++|++.. ..+.++++++||||+|++.+++++++||.|++++|+||.++||+||+||+|
T Consensus 86 ~~~~El~~~~i~vl~~~~~~~~P~~~~--~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l 163 (453)
T TIGR00457 86 GQPVELQVKKIEVVGEAEPDDYPLQKK--EHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPIL 163 (453)
T ss_pred CCCEEEEEeEEEEEecCCccCCCCCcc--ccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeE
Confidence 589999999999999997 4566544 356788889999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcc-cccccc------CCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccccc
Q psy3762 167 SKSTPEGARD-YLVPSR------INPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETS 238 (595)
Q Consensus 167 ~~~~~~ga~~-f~~~~~------~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~ 238 (595)
+.++++|+.+ |.++.. .+.+..+||+||||+|||++ ++|++||||||||||||+++++||+ ||||||||++
T Consensus 164 ~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~ 242 (453)
T TIGR00457 164 TSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMA 242 (453)
T ss_pred eecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccCCCCCCcCcchhccceeeee
Confidence 9999998766 655421 14577789999999999986 6899999999999999999998886 9999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCC----------C------------CCCCccccHHHHHHHhCCCCCccccchhhcc
Q psy3762 239 FMNEEEIRNLFEEMIRVIFYKTLNIK----------L------------PNPFPVIEWSTAIKLYGSDKPDMCIKLIFTD 296 (595)
Q Consensus 239 ~~~~~dl~~~~E~ll~~l~~~~~~~~----------~------------~~~f~rity~ea~~~~~~d~p~lr~~~~~~~ 296 (595)
|++++|+|+++|++++++++.+.+.+ + ..+|+||||.||++..
T Consensus 243 ~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l--------------- 307 (453)
T TIGR00457 243 FANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEIL--------------- 307 (453)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHH---------------
Confidence 99999999999999999999876421 0 0245555555555432
Q ss_pred hhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCH
Q psy3762 297 LTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNN 376 (595)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (595)
+..+.. + .. ++.||. . ++.
T Consensus 308 -----------------------------------------------~~~~~~-~---~~-~~~~g~-~--------l~~ 326 (453)
T TIGR00457 308 -----------------------------------------------KESDKN-F---EY-EDFWGD-D--------LQT 326 (453)
T ss_pred -----------------------------------------------HhcCCC-C---cC-CCCCCC-C--------CCc
Confidence 111100 0 00 000111 0 111
Q ss_pred HHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCcccccccccccccc
Q psy3762 377 LILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHH 456 (595)
Q Consensus 377 ~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~ 456 (595)
+. ++ .|++ .....|+||+|||.. .+
T Consensus 327 ~~--------------------------e~-------~L~~----------~~~~~p~fIt~~P~~------------~~ 351 (453)
T TIGR00457 327 EH--------------------------ER-------FLAE----------EYFKPPVFVTNYPKD------------IK 351 (453)
T ss_pred HH--------------------------HH-------HHHH----------HhCCCCEEEECCCcc------------cC
Confidence 10 11 1121 012459999999985 39
Q ss_pred CCCCCCCCCCcccccCccccccceeeEEecCE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCc
Q psy3762 457 PFTAPKDGYEDFIITNPEKIFSKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPH 535 (595)
Q Consensus 457 PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh 535 (595)
||||+.+ ++| .++++|||+++|+ ||+|||+|+|+++.+.++++..|++++ .|.|||+|++||+|||
T Consensus 352 pfy~~~~-------~~~--~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~----~~~~Yl~~~~~G~pPh 418 (453)
T TIGR00457 352 AFYMKLN-------DDG--KTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTD----ALNWYLDLRKYGSVPH 418 (453)
T ss_pred hhhcccC-------CCc--CceeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHH----HHHHHHHHHHcCCCCC
Confidence 9998753 555 6899999999996 999999999999999999999999987 4899999999999999
Q ss_pred cceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 536 GGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 536 ~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
||||||+|||+|+++|.+|||||++|||+++
T Consensus 419 gG~GiGieRlvm~l~g~~~Irdv~~FPr~~~ 449 (453)
T TIGR00457 419 SGFGLGFERLLAYITGLENIRDAIPFPRTPG 449 (453)
T ss_pred CcEeehHHHHHHHHhCCCcHhhhccCcCCCC
Confidence 9999999999999999999999999999995
No 19
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=1e-85 Score=716.08 Aligned_cols=412 Identities=25% Similarity=0.410 Sum_probs=338.3
Q ss_pred Ccccccccc-ccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc-HHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 1 MRTHYCGNI-TEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND-IKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 1 ~~t~~~~~l-~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~-~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
|+..+|.++ ...++|++|+|+|||+++|.+|+++|++|||++|.+|+++..+. .++++.+++|+.||+|.|+|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~iq~~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~ 80 (450)
T PRK03932 1 MMRVSIKDILKGKYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGEEYFEEIKKLTTGSSVIVTGTVVES 80 (450)
T ss_pred CCcEEHHHhcccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCcEEEEEEcCCChHHHHHHhcCCCCcEEEEEEEEEcC
Confidence 455678887 67889999999999999999999999999999999988876543 4578888999999999999999987
Q ss_pred CCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCC
Q psy3762 79 PNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKK 157 (595)
Q Consensus 79 ~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~g 157 (595)
+. .+|++||+|++++|||+|. ++|++.++ .+.++++++||||+|++.++++|++||.|++++|+||.++|
T Consensus 81 ~~-------~~~~~el~~~~i~vl~~~~~~~p~~~~~--~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~g 151 (450)
T PRK03932 81 PR-------AGQGYELQATKIEVIGEDPEDYPIQKKR--HSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENG 151 (450)
T ss_pred CC-------CCCCEEEEEEEEEEccCCCCCCCCCccc--cChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 53 3578999999999999984 56666433 56788889999999999999999999999999999999999
Q ss_pred CeeccCceeecCCCCCCcc-cccccc------CCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-c
Q psy3762 158 FIEIETPILSKSTPEGARD-YLVPSR------INPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-E 229 (595)
Q Consensus 158 F~EV~TPiL~~~~~~ga~~-f~~~~~------~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-E 229 (595)
|+||+||+|++++++|+.+ |.+++. .+.+..+||+||||+|||++ ++|++||||||||||||++++.||+ |
T Consensus 152 f~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~E 230 (450)
T PRK03932 152 FVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGPTFRAENSNTRRHLAE 230 (450)
T ss_pred CEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeeeccccCCCCCcccccc
Confidence 9999999999999988665 766432 35677789999999999985 6899999999999999999888886 9
Q ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHHHcCCC----------------------CCCCCccccHHHHHHHhCCCCCc
Q psy3762 230 FTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIK----------------------LPNPFPVIEWSTAIKLYGSDKPD 287 (595)
Q Consensus 230 Ft~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~----------------------~~~~f~rity~ea~~~~~~d~p~ 287 (595)
|||||||++|++++|+|+++|++++++++.+++.+ +..||+||||.||++.....
T Consensus 231 Ft~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~--- 307 (450)
T PRK03932 231 FWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKS--- 307 (450)
T ss_pred ccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHc---
Confidence 99999999999999999999999999988776310 22478888888887642100
Q ss_pred cccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCC
Q psy3762 288 MCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLK 367 (595)
Q Consensus 288 lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 367 (595)
+.+ +. ....+|.
T Consensus 308 -----------------------------------------------------------~~~-~~----~~~~~g~---- 319 (450)
T PRK03932 308 -----------------------------------------------------------GKK-FE----FPVEWGD---- 319 (450)
T ss_pred -----------------------------------------------------------CCC-cC----CCCCccc----
Confidence 000 00 0000010
Q ss_pred cccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccc
Q psy3762 368 SPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKI 447 (595)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~ 447 (595)
.++.+ .++.| +. +....|+||+|||..
T Consensus 320 -----~l~~~--------------------------~e~~l-------~~----------~~~~~pvfI~~yP~~----- 346 (450)
T PRK03932 320 -----DLGSE--------------------------HERYL-------AE----------EHFKKPVFVTNYPKD----- 346 (450)
T ss_pred -----ccChH--------------------------HHHHH-------HH----------HhcCCcEEEECCCcc-----
Confidence 01100 01111 11 022469999999985
Q ss_pred cccccccccCCCCCCCCCCcccccCccccccceeeEEecCE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHH
Q psy3762 448 NNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLN 526 (595)
Q Consensus 448 ~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~ 526 (595)
.+||||+.+ .+. .++++|||++||+ ||+||++|+|+++.+.++++..|++++ .++||++
T Consensus 347 -------~~pfy~~~~-------~~~--~~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~----~~~~yl~ 406 (450)
T PRK03932 347 -------IKAFYMRLN-------PDG--KTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKE----DYWWYLD 406 (450)
T ss_pred -------cCcccCcCC-------CCC--CEEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHHHcCCCHH----HHHHHHH
Confidence 399997542 222 6899999999997 999999999999999999999999886 5899999
Q ss_pred HhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 527 SLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 527 al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
+++||+|||||||||||||+|+++|.+|||||++|||+++
T Consensus 407 ~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~ 446 (450)
T PRK03932 407 LRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPG 446 (450)
T ss_pred HHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCC
Confidence 9999999999999999999999999999999999999995
No 20
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=8.7e-86 Score=724.00 Aligned_cols=409 Identities=21% Similarity=0.331 Sum_probs=332.0
Q ss_pred cccCCCEEEEEEEEEeEeccCC--eEEEEEEeCC--eeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCC
Q psy3762 11 EKLLDQVISLCGWVHRKRNHGG--IIFIDLRDYT--GLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTN 86 (595)
Q Consensus 11 ~~~~g~~V~i~GwV~~~R~~g~--l~Fi~LrD~~--g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~ 86 (595)
..++|++|+|+|||+++|.+|+ ++|++|||++ |.+|||+.++.. ...+.|+.||+|.|+|+|+.++...
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~---~~~~~L~~ES~V~V~G~V~~~~~~~---- 118 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY---DLSTLVATGTCVTVDGVLKVPPEGK---- 118 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh---hHHhcCCCceEEEEEEEEEeCCccC----
Confidence 5688999999999999999995 8999999999 799999986532 2234699999999999999887521
Q ss_pred cCCccEEEEEeeEEEeecCCCCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCcee
Q psy3762 87 LISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPIL 166 (595)
Q Consensus 87 ~~~g~iEl~v~~i~vls~~~~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL 166 (595)
.++|++||++++|+|||+|.+.|||+..+..+.++++++|||++|++.++++||+||.+.+++|+||.++||+||+||+|
T Consensus 119 ~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~L 198 (572)
T PLN02221 119 GTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPII 198 (572)
T ss_pred CCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCee
Confidence 14679999999999999997667777665567777779999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcc-ccccc----------------------------------------------------------------
Q psy3762 167 SKSTPEGARD-YLVPS---------------------------------------------------------------- 181 (595)
Q Consensus 167 ~~~~~~ga~~-f~~~~---------------------------------------------------------------- 181 (595)
++++||||++ |.+++
T Consensus 199 t~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (572)
T PLN02221 199 TTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESL 278 (572)
T ss_pred ccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhhh
Confidence 9999999887 55421
Q ss_pred -----------------------cCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-ccccccccc
Q psy3762 182 -----------------------RINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCET 237 (595)
Q Consensus 182 -----------------------~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~ 237 (595)
..+.|+.+||+||||||+|++ +++++|||+||||||||+++++||+ ||||+|+||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~-~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Em 357 (572)
T PLN02221 279 AHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETY-ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEI 357 (572)
T ss_pred hhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHH-HHhcCCeEEEccceecCCCCCCcccccccceeeee
Confidence 135567789999999999995 5779999999999999999999999 999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCC----------------------CCCCCccccHHHHHHHhCCCCCccccchhhc
Q psy3762 238 SFMNEEEIRNLFEEMIRVIFYKTLNIK----------------------LPNPFPVIEWSTAIKLYGSDKPDMCIKLIFT 295 (595)
Q Consensus 238 ~~~~~~dl~~~~E~ll~~l~~~~~~~~----------------------~~~~f~rity~ea~~~~~~d~p~lr~~~~~~ 295 (595)
+|.|++|+|+++|++++++++.+.+.+ +..||+||||.||++......
T Consensus 358 af~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~---------- 427 (572)
T PLN02221 358 AFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAV---------- 427 (572)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhh----------
Confidence 999999999999999999999876421 124788888888876421000
Q ss_pred chhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccC
Q psy3762 296 DLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFN 375 (595)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 375 (595)
..|.+ +. .+..||. .++
T Consensus 428 -------------------------------------------------~~g~~-~~----~~~~~G~---------dl~ 444 (572)
T PLN02221 428 -------------------------------------------------AKGKE-FD----NNVEWGI---------DLA 444 (572)
T ss_pred -------------------------------------------------hcCCC-CC----CCcchhh---------hhh
Confidence 00000 00 0000111 011
Q ss_pred HHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccc
Q psy3762 376 NLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARH 455 (595)
Q Consensus 376 ~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~ 455 (595)
.+. ++ .++. ....+|+||+|||.. .
T Consensus 445 ~e~--------------------------Er-------~L~~----------~~~~~pvfv~dyP~~------------~ 469 (572)
T PLN02221 445 SEH--------------------------ER-------YLTE----------VLFQKPLIVYNYPKG------------I 469 (572)
T ss_pred HHH--------------------------HH-------HHHH----------HhcCCcEEEEcCChh------------h
Confidence 110 11 1221 012469999999985 3
Q ss_pred cCCCCCCCCCCcccccCccccccceeeEEecCE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCC
Q psy3762 456 HPFTAPKDGYEDFIITNPEKIFSKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPP 534 (595)
Q Consensus 456 ~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PP 534 (595)
+||||+.+ +|| ..+.+|||+++|+ ||+||++|+|+++.+.+++++.|++++ .|+|||+|++||+||
T Consensus 470 ~pfy~~~~-------~d~--~~~~~fDLl~~g~~El~~g~~R~~r~e~l~~~~~~~g~~~~----~~~~yLda~~~G~pP 536 (572)
T PLN02221 470 KAFYMRLN-------DDE--KTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIE----PYEWYLDLRRYGTVK 536 (572)
T ss_pred CcccccCC-------CCC--ceEEEEEEecCCceEECCHHHHHHHHHHHHHHHHHcCCChh----hhHHHHHHhhCCCCC
Confidence 99998764 444 4567999999997 999999999999999999999999876 589999999999999
Q ss_pred ccceeccHHHHHHHHcCCCCccccccCCCCCCccc
Q psy3762 535 HGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQC 569 (595)
Q Consensus 535 h~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~~~ 569 (595)
|||||||||||+|+++|.+|||||++|||+++ .|
T Consensus 537 h~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~-~~ 570 (572)
T PLN02221 537 HCGFGLGFERMILFATGIDNIRDVIPFPRYPG-KA 570 (572)
T ss_pred CceEEEeHHHHHHHHcCCCchheEeecCCCcC-cC
Confidence 99999999999999999999999999999994 44
No 21
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-84 Score=716.61 Aligned_cols=438 Identities=20% Similarity=0.355 Sum_probs=335.9
Q ss_pred ccccccccccccC---------CCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc---HHHHHHH-hcCCCCcE
Q psy3762 2 RTHYCGNITEKLL---------DQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND---IKIYKIA-KIIRNEFC 68 (595)
Q Consensus 2 ~t~~~~~l~~~~~---------g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~---~~~~~~~-~~l~~es~ 68 (595)
+||++.++.+... ++.|+|+|||+++|.+||++|++|||++|.||||+..+. .+.++.+ +.|+.||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~~l~~gdi 164 (659)
T PTZ00385 85 GITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGNELQVVGQVGEHFTREDLKKLKVSLRVGDI 164 (659)
T ss_pred ccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCceEEEEEECCccCCHHHHHHHHhCCCCCCE
Confidence 4777877754432 346999999999999999999999999999999998654 2355555 57999999
Q ss_pred EEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC--CCCC-c-c-c-ccCcchhhhccccchhhc-cHhhHHHHHH
Q psy3762 69 LQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI--TLPF-Q-I-D-EKNILEVTNLKYRVLYLR-YKHMQKNLRL 141 (595)
Q Consensus 69 V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~--~lP~-~-~-~-~~~~~~~~r~~~r~l~lr-~~~~~~~l~~ 141 (595)
|.|+|+|.++ ++|++||+++++++||++. .+|. | . + ....+.++|+++|||||| ++..+++|++
T Consensus 165 V~V~G~v~~t---------~~GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~ 235 (659)
T PTZ00385 165 IGADGVPCRM---------QRGELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKK 235 (659)
T ss_pred EEEEEEEEec---------CCceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHHHHH
Confidence 9999999864 4799999999999999953 3321 2 1 1 115678999999999996 7899999999
Q ss_pred HHHHHHHHHHHhhhCCCeeccCceeecCCCC-CCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecC
Q psy3762 142 RYKVTMEVRKFLDSKKFIEIETPILSKSTPE-GARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDE 220 (595)
Q Consensus 142 rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~-ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E 220 (595)
||.|+++||+||.++||+||+||+|++++++ +|+.|.+.+. +.+..+||+||||+|+|+++++|++||||||||||||
T Consensus 236 Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n-~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE 314 (659)
T PTZ00385 236 RHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHN-ANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNE 314 (659)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecc-cCCCCEEecCChHHHHHHHhhcccCCEEEEeceecCC
Confidence 9999999999999999999999999876655 4677755432 2355678999999999999999999999999999999
Q ss_pred CCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcC-----------------CCCCCCCccccHHHHHHHhCC
Q psy3762 221 DLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLN-----------------IKLPNPFPVIEWSTAIKLYGS 283 (595)
Q Consensus 221 ~~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~-----------------~~~~~~f~rity~ea~~~~~~ 283 (595)
+++++|+|||||||||++|+|++|+|+++|+++++++..+.+ .++..||+|+||.+++.++.+
T Consensus 315 ~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G 394 (659)
T PTZ00385 315 DADRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSG 394 (659)
T ss_pred CCCCCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccCCCCceEEeHHHHHHHHhC
Confidence 999888889999999999999999999999999999987642 123358999997777777643
Q ss_pred CCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEecccccc
Q psy3762 284 DKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEF 363 (595)
Q Consensus 284 d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (595)
.++.-. .+++ +....+.+..++++.|.
T Consensus 395 ~d~~~~-----~dl~---------------------------------~~~e~~~~~~~~~~~gi--------------- 421 (659)
T PTZ00385 395 VEFPPP-----NELN---------------------------------TPKGIAYMSVVMLRYNI--------------- 421 (659)
T ss_pred CCCCcc-----ccCC---------------------------------CHHHHHHHHHHHHHcCC---------------
Confidence 221000 0000 00011111223333221
Q ss_pred CCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCc
Q psy3762 364 DGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFK 443 (595)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~ 443 (595)
...+. .......+.+++.+ + .+...+|+||+|||...
T Consensus 422 -------------------------~~~~~----~~~g~~~~~lfe~~---v-----------e~~l~qPtFI~dyP~e~ 458 (659)
T PTZ00385 422 -------------------------PLPPV----RTAAKMFEKLIDFF---I-----------TDRVVEPTFVMDHPLFM 458 (659)
T ss_pred -------------------------CCCcc----cchhHHHHHHHHHH---H-----------HHhhCCcEEEeCCcccc
Confidence 00000 00000111122211 1 12346799999999863
Q ss_pred cccccccccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHH-----cCCChhhhh
Q psy3762 444 YDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKV-----LNIDNKIVK 518 (595)
Q Consensus 444 ~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~-----~g~~~~~~~ 518 (595)
.||++++. +|| .+++||||+++|+||+|||+|+|||.+|+++|+. .+.+++..
T Consensus 459 ------------sPLak~~~-------~dp--~~teRFELfi~G~EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~- 516 (659)
T PTZ00385 459 ------------SPLAKEQV-------SRP--GLAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAM- 516 (659)
T ss_pred ------------CcccccCC-------CCC--CeEEEEEEEeCCeEeeecccccCCHHHHHHHHHHHHHHHhcCCchhh-
Confidence 89987764 676 6899999999999999999999999999999954 34554432
Q ss_pred hcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 519 TQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 519 ~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
...+|||+|++||||||||||||+|||+|++||.+|||||++||....-
T Consensus 517 ~~DedfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilFP~mr~~ 565 (659)
T PTZ00385 517 PLDETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQD 565 (659)
T ss_pred ccHHHHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecCcccccc
Confidence 3458999999999999999999999999999999999999999988753
No 22
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=1.4e-83 Score=709.26 Aligned_cols=431 Identities=22% Similarity=0.359 Sum_probs=335.2
Q ss_pred cccccccccccc---------CCCEEEEEEEEEeEeccC-CeEEEEEEeCCeeEEEEECCCc----HHHHHH-HhcCCCC
Q psy3762 2 RTHYCGNITEKL---------LDQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPND----IKIYKI-AKIIRNE 66 (595)
Q Consensus 2 ~t~~~~~l~~~~---------~g~~V~i~GwV~~~R~~g-~l~Fi~LrD~~g~lQvv~~~~~----~~~~~~-~~~l~~e 66 (595)
++|++.++.+.. .+..|+|+|||+++|.+| +++|++|+|++|.+|||++++. .+.++. .+.|+.|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~G 189 (585)
T PTZ00417 110 RTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRG 189 (585)
T ss_pred CCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCC
Confidence 578887775432 234599999999999999 7999999999999999998652 234443 5779999
Q ss_pred cEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHH
Q psy3762 67 FCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYK 144 (595)
Q Consensus 67 s~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~ 144 (595)
|+|+|+|++.++ ++|++||.++++++||+|. ++|... . ..+.++|+++|||||| ++..+++|++||.
T Consensus 190 d~V~V~G~~~~t---------~~gel~i~~~~i~llsk~l~~lP~~~-g-~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~ 258 (585)
T PTZ00417 190 DIVGIVGFPGKS---------KKGELSIFPKETIILSPCLHMLPMKY-G-LKDTEIRYRQRYLDLMINESTRSTFITRTK 258 (585)
T ss_pred CEEEEEeEEcCC---------CCceEEEEEEEEEEEecCCCCCCccc-C-CCCcccccccchhhhhcCHHHHHHHHHHHH
Confidence 999999997754 5789999999999999996 577664 2 4568999999999998 8999999999999
Q ss_pred HHHHHHHHhhhCCCeeccCceeecCCCCCCc--cccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCC
Q psy3762 145 VTMEVRKFLDSKKFIEIETPILSKSTPEGAR--DYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDL 222 (595)
Q Consensus 145 i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~--~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~ 222 (595)
|+++||+||.++||+||+||+|+++ ++||. +|.... ...+..+||++|||||+|+|+++|++||||||||||||++
T Consensus 259 Ii~aiR~Ff~~rGFlEVeTPiL~~~-~GGA~a~PF~T~~-n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~ 336 (585)
T PTZ00417 259 IINYLRNFLNDRGFIEVETPTMNLV-AGGANARPFITHH-NDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGI 336 (585)
T ss_pred HHHHHHHHHHHCCeEEEeCCeeecc-CCcccceeEEecc-cCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCC
Confidence 9999999999999999999999987 45654 354322 2345668999999999999999999999999999999999
Q ss_pred CCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC-----------------CCCCCCccccHHHHHHHhCCCC
Q psy3762 223 RSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI-----------------KLPNPFPVIEWSTAIKLYGSDK 285 (595)
Q Consensus 223 ~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~-----------------~~~~~f~rity~ea~~~~~~d~ 285 (595)
+++|+|||||||||++|+|++|+|+++|+||++++..+.+. ++..||+++||.||++++.+.+
T Consensus 337 ~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g~~ 416 (585)
T PTZ00417 337 DNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTK 416 (585)
T ss_pred CCCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999877532 2446899999999999885432
Q ss_pred CccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCC
Q psy3762 286 PDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDG 365 (595)
Q Consensus 286 p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 365 (595)
+.- .+. .-...+++.++++..|.
T Consensus 417 ~~~-----------~~~-----------------------------~~~~~~el~~~l~~~g~----------------- 439 (585)
T PTZ00417 417 LEQ-----------PFD-----------------------------SPETINKMINLIKENKI----------------- 439 (585)
T ss_pred ccc-----------ccc-----------------------------ccCCHHHHHHHHHHcCC-----------------
Confidence 100 000 00112233333433321
Q ss_pred CCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHH-HHHHhcccCcccccccccCCCccEEEEecCCCcc
Q psy3762 366 LKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSA-LRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKY 444 (595)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~-~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~ 444 (595)
+..+ ..+....++.+++. +++.+ ...|+||+|||...
T Consensus 440 -----------------------~~~~----~~~~~~~l~~l~e~~vE~~l--------------~~~PtFI~dyP~~~- 477 (585)
T PTZ00417 440 -----------------------EMPN----PPTAAKLLDQLASHFIENKY--------------PNKPFFIIEHPQIM- 477 (585)
T ss_pred -----------------------CCCC----CCCHHHHHHHHHHHHHHHhh--------------CCCcEEEECCChhh-
Confidence 1000 00000111122211 11111 13599999999853
Q ss_pred ccccccccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc------CCChhhhh
Q psy3762 445 DKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL------NIDNKIVK 518 (595)
Q Consensus 445 ~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~------g~~~~~~~ 518 (595)
.||+.... +|| .++++|||+++|+||+||++|+|||.+|+++|+.+ | +++ ..
T Consensus 478 -----------sPLak~~~-------~dp--~v~eRFELfi~G~EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e-~~ 535 (585)
T PTZ00417 478 -----------SPLAKYHR-------SKP--GLTERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDREKG-DAE-AF 535 (585)
T ss_pred -----------CchhhhcC-------CCC--CeEEeEEeEECCEEEccCcchhcCHHHHHHHHHHHHHHHHcC-CCc-cc
Confidence 89976543 666 78999999999999999999999999999988642 3 333 22
Q ss_pred hcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 519 TQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 519 ~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
+..++||+|++||+|||||||||||||+|++||.+||||||+||+++.
T Consensus 536 ~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 536 QFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred ccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 344569999999999999999999999999999999999999999873
No 23
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=2.1e-84 Score=714.21 Aligned_cols=388 Identities=17% Similarity=0.267 Sum_probs=318.1
Q ss_pred EeccCCeEEEEEEeCCee--EEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeec
Q psy3762 27 KRNHGGIIFIDLRDYTGL--VQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 27 ~R~~g~l~Fi~LrD~~g~--lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~ 104 (595)
.|.+|+++||+||||+|. +|||+++... ...+.|+.|++|.|+|+|+.++. ...+|++||++++|+|||+
T Consensus 129 ~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~---~~~~~L~~Es~V~V~G~V~~~~~-----~~~~g~iEl~v~~i~VLg~ 200 (633)
T PLN02532 129 APPPPSVAYLLISDGSCVASLQVVVDSALA---PLTQLMATGTCILAEGVLKLPLP-----AQGKHVIELEVEKILHIGT 200 (633)
T ss_pred cccCCCcEEEEEECCCCccceEEEEeCCcc---cHhhcCCCceEEEEEEEEEecCC-----CCCCCcEEEEeeEEEEEec
Confidence 788999999999999997 9999986532 11268999999999999998621 1357899999999999999
Q ss_pred CCCCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCCCccc-cccc--
Q psy3762 105 SITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDY-LVPS-- 181 (595)
Q Consensus 105 ~~~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f-~~~~-- 181 (595)
+.+.|||+.++..+.+++++|||||+|++.++++|++||.+.+++|+||.++||+||+||+|++++||||+++ .+++
T Consensus 201 a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t~~ 280 (633)
T PLN02532 201 VDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFGEMFRVTTLL 280 (633)
T ss_pred CCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccccccceeccc
Confidence 8767888876555666666999999999999999999999999999999999999999999999999999874 3321
Q ss_pred --------------------------------------------------------------------------------
Q psy3762 182 -------------------------------------------------------------------------------- 181 (595)
Q Consensus 182 -------------------------------------------------------------------------------- 181 (595)
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (633)
T PLN02532 281 GKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADK 360 (633)
T ss_pred cccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ----cCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 182 ----RINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 182 ----~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
..|.|+.+||+||||||+|++ ++|++|||+||||||||+++|+||+ ||||||+||+|++++|+|+++|++|+++
T Consensus 361 ~~f~~dyFg~~ayLtqS~QLylE~~-~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v 439 (633)
T PLN02532 361 LSFSKDFFSRPTYLTVSGRLHLESY-ACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFL 439 (633)
T ss_pred cccccccCCCCeeeccCHHHHHHHH-HHhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHHHH
Confidence 023456689999999999996 5789999999999999999999988 9999999999999999999999999999
Q ss_pred HHHHcCCC----------------------CCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhh
Q psy3762 257 FYKTLNIK----------------------LPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIAN 314 (595)
Q Consensus 257 ~~~~~~~~----------------------~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (595)
++.+++.+ +..||+||||.||++.+..... ..|
T Consensus 440 ~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~-----------------~~~-------- 494 (633)
T PLN02532 440 CKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATD-----------------KKF-------- 494 (633)
T ss_pred HHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcC-----------------CCc--------
Confidence 99886431 2248899999998875421000 000
Q ss_pred ccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeE
Q psy3762 315 MKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDII 394 (595)
Q Consensus 315 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~ 394 (595)
. ....||. +++ .+..+
T Consensus 495 -----------------e------------------------~~~~~g~-dL~--------~e~Er-------------- 510 (633)
T PLN02532 495 -----------------E------------------------TKPEWGI-ALT--------TEHLS-------------- 510 (633)
T ss_pred -----------------c------------------------cccccCC-ccC--------hHHHH--------------
Confidence 0 0000111 111 11111
Q ss_pred EecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCcc
Q psy3762 395 FLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPE 474 (595)
Q Consensus 395 ~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~ 474 (595)
. +.+ .....|+||+|||.. .+||||+.+ +||
T Consensus 511 ------------~-------L~~----------~~~~~PvFVtdyP~~------------ikPFY~~~~-------~d~- 541 (633)
T PLN02532 511 ------------Y-------LAD----------EIYKKPVIIYNYPKE------------LKPFYVRLN-------DDG- 541 (633)
T ss_pred ------------H-------HHH----------HHcCCCEEEECCChh------------hchhhCCcC-------CCC-
Confidence 1 111 012569999999985 399999864 454
Q ss_pred ccccceeeEEecCE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCC
Q psy3762 475 KIFSKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSK 553 (595)
Q Consensus 475 ~~~~~~fDl~~~G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~ 553 (595)
.++++|||+++|+ ||+|||+|+|+++.+.+++++.|++++ .|+|||++++||+|||||||||||||+||+||.+
T Consensus 542 -~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~Gld~e----~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~ 616 (633)
T PLN02532 542 -KTVAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPRE----QYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLP 616 (633)
T ss_pred -CceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHcCCChh----hHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCC
Confidence 5689999999986 999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred CccccccCCCCCC
Q psy3762 554 SIRDVIAFPKTQS 566 (595)
Q Consensus 554 ~IRdvi~FPr~~~ 566 (595)
|||||++|||+++
T Consensus 617 nIRDvi~FPR~~g 629 (633)
T PLN02532 617 DVRDAIPFPRSWG 629 (633)
T ss_pred chheEeecCCCcC
Confidence 9999999999994
No 24
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.9e-83 Score=748.23 Aligned_cols=428 Identities=23% Similarity=0.414 Sum_probs=345.9
Q ss_pred ccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--H-HHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--K-IYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 2 ~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~-~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
+||+|+++.+...|++|+|+|||+++|.+||++|++|||++|.+|||++++.. + ...+.+.|+.||+|.|+|++.++
T Consensus 638 ~~~~~~~~~~~~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~gd~V~v~G~v~~t 717 (1094)
T PRK02983 638 PTHTVAEALDAPTGEEVSVSGRVLRIRDYGGVLFADLRDWSGELQVLLDASRLEQGSLADFRAAVDLGDLVEVTGTMGTS 717 (1094)
T ss_pred CccCHHHHHHhcCCCEEEEEEEEEEEeeCCCeEEEEEEeCCeeEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEEc
Confidence 69999999999999999999999999999999999999999999999987632 2 22344679999999999999886
Q ss_pred CCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHHHHHHHHHhhhC
Q psy3762 79 PNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKVTMEVRKFLDSK 156 (595)
Q Consensus 79 ~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i~~~iR~ff~~~ 156 (595)
++|++||.+++++++++|. ++|.+... ..+.++|+++||||+| ++..+++|++||.|++++|+||.++
T Consensus 718 ---------~~ge~ei~~~~i~ll~k~~~plP~k~~~-~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~ 787 (1094)
T PRK02983 718 ---------RNGTLSLLVTSWRLAGKCLRPLPDKWKG-LTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVAR 787 (1094)
T ss_pred ---------CCCCEEEEEeEEEEEeccCcCCCCcccc-CCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4589999999999999996 56765544 5678999999999997 6999999999999999999999999
Q ss_pred CCeeccCceeecCCCCC-CccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCcccccccc
Q psy3762 157 KFIEIETPILSKSTPEG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDC 235 (595)
Q Consensus 157 gF~EV~TPiL~~~~~~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~ 235 (595)
||+||+||+|+++.+++ +++|.+.. .+.+..+||++|||+|+|+++++|++||||||||||||+++++|+|||||||+
T Consensus 788 gFlEVeTPiL~~~~gGa~a~pF~t~~-~~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~rHnpEFTmLE~ 866 (1094)
T PRK02983 788 GFLEVETPILQQVHGGANARPFVTHI-NAYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDATHNPEFTLLEA 866 (1094)
T ss_pred CCEEEeCCEeeccCCCcccceeEeee-cCCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCCCccccccchhh
Confidence 99999999999766543 45575432 24566689999999999999999999999999999999999998999999999
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHcCC---------------CCCCCCccccHHHHHHHhCCCCCccccchhhcchhhh
Q psy3762 236 ETSFMNEEEIRNLFEEMIRVIFYKTLNI---------------KLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300 (595)
Q Consensus 236 e~~~~~~~dl~~~~E~ll~~l~~~~~~~---------------~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~ 300 (595)
|++|.|++|+|+++|+|++++++.+.+. ++..||+|+||.||++++.+.+.+-
T Consensus 867 y~a~~dy~d~m~l~E~li~~i~~~v~~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~g~~~~~------------ 934 (1094)
T PRK02983 867 YQAHADYDTMRDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVDISGPWPVVTVHDAVSEALGEEIDP------------ 934 (1094)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHhCCcEEeeCCccccccccccCCCceEEEHHHHHHHHhCCCCCC------------
Confidence 9999999999999999999999987542 2346899999999999875432210
Q ss_pred hhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHH
Q psy3762 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILE 380 (595)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 380 (595)
....+.+.+++++.|.+ +.+ . .+.
T Consensus 935 --------------------------------~~~~~~l~~~~~~~~i~------~~~----------~----~~~---- 958 (1094)
T PRK02983 935 --------------------------------DTPLAELRKLCDAAGIP------YRT----------D----WDA---- 958 (1094)
T ss_pred --------------------------------CCCHHHHHHHHHHcCCC------CCC----------C----CCH----
Confidence 01122333333332210 000 0 000
Q ss_pred HHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccccccCCC
Q psy3762 381 KIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIARHHPFT 459 (595)
Q Consensus 381 ~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~ 459 (595)
...+....+. ++ +....|+||+|||.. .+|||
T Consensus 959 --------------------~~l~~~l~~~---------------~ve~~~~~P~Fv~dyP~~------------~spla 991 (1094)
T PRK02983 959 --------------------GAVVLELYEH---------------LVEDRTTFPTFYTDFPTS------------VSPLT 991 (1094)
T ss_pred --------------------hHHHHHHHHH---------------HHHhhcCCCEEEECCCcc------------ccccc
Confidence 0011111111 11 234679999999985 39999
Q ss_pred CCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc-----CCChhhhhhcHHHHHHHhhCCCCC
Q psy3762 460 APKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL-----NIDNKIVKTQFGFLLNSLKYGAPP 534 (595)
Q Consensus 460 ~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~-----g~~~~~~~~~~~~yL~al~~G~PP 534 (595)
|+++ +|| .++++|||+++|+||+||++|+|||.+|+++|+++ +.+++.. +..+|||+|++||+||
T Consensus 992 ~~~~-------~~p--~~~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~-~~De~yl~al~yGmPP 1061 (1094)
T PRK02983 992 RPHR-------SDP--GLAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAM-ELDEDFLQALEYAMPP 1061 (1094)
T ss_pred ccCC-------CCC--CeeEEEEEEECCEEEeccccccCCHHHHHHHHHHHHHHHhCCChhhc-cccHHHHHHHHcCCCC
Confidence 9875 666 68999999999999999999999999999998753 5566532 2457999999999999
Q ss_pred ccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 535 HGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 535 h~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
|||||||+|||+|++||. ||||||+||+.+.
T Consensus 1062 ~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~ 1092 (1094)
T PRK02983 1062 TGGLGMGVDRLVMLLTGR-SIRETLPFPLVKP 1092 (1094)
T ss_pred CCeEEeeHHHHHHHHhCC-ChheEecCCcCCC
Confidence 999999999999999996 9999999999874
No 25
>KOG0556|consensus
Probab=100.00 E-value=8.5e-83 Score=646.37 Aligned_cols=432 Identities=28% Similarity=0.425 Sum_probs=356.2
Q ss_pred ccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc-----HHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND-----IKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~-----~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
..+++|+.+..|+.|+|+||||..|..||+||++||++++++||++..+. .+|.+++.+|+.||+|.|.|+|++.
T Consensus 71 ~~v~dl~~~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k~ 150 (533)
T KOG0556|consen 71 TDVSDLDESNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVKV 150 (533)
T ss_pred eehhhhhhhcCCceEEEEEEEeeccccceEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEecC
Confidence 35789999999999999999999999999999999999999999986432 3799999999999999999999987
Q ss_pred CCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc------------------CcchhhhccccchhhccHhhHHHH
Q psy3762 79 PNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK------------------NILEVTNLKYRVLYLRYKHMQKNL 139 (595)
Q Consensus 79 ~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~------------------~~~~~~r~~~r~l~lr~~~~~~~l 139 (595)
+... .+++.+.+||++.++.+||.+. .||+.++|+ .+..++||+||.||||+|+.+++|
T Consensus 151 ~~~i--~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiF 228 (533)
T KOG0556|consen 151 KEPI--KSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTPTNQAIF 228 (533)
T ss_pred CCcc--cccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccccchhee
Confidence 6543 3467889999999999999997 699988775 135689999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCeeccCceeecCCCCC-CccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEeccee
Q psy3762 140 RLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFR 218 (595)
Q Consensus 140 ~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR 218 (595)
++++.|..++|+||..+||+||+||.|..++.|| ++.|.+. |.+...||+|||||||||+++++++|||+||||||
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~---Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfR 305 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVS---YFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFR 305 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEEE---eccCcchhhcChHHHHHHHHhcchhheeeecceee
Confidence 9999999999999999999999999999877776 5557664 56777899999999999999999999999999999
Q ss_pred cCCCCCCCCc-cccccccccccCC-HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcc
Q psy3762 219 DEDLRSDRQP-EFTQIDCETSFMN-EEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTD 296 (595)
Q Consensus 219 ~E~~~~~r~~-EFt~lE~e~~~~~-~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~ 296 (595)
+|+++++||+ ||+-||+||+|.. |+|+|+.+.+++-++|+.+... |.+-++..+.-.|
T Consensus 306 AEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~er----------y~~Eie~Vr~qyp---------- 365 (533)
T KOG0556|consen 306 AEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRER----------YAKEIETVRKQYP---------- 365 (533)
T ss_pred ccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhcCC----------
Confidence 9999999999 9999999999986 7999999999999999977542 3333322111111
Q ss_pred hhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCH
Q psy3762 297 LTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNN 376 (595)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (595)
|. -++++ .+..+ ++.
T Consensus 366 ---------~e--------------~fkf~-----------------------------------------~~~lr-l~~ 380 (533)
T KOG0556|consen 366 ---------FE--------------PFKFL-----------------------------------------EPPLR-LTF 380 (533)
T ss_pred ---------Cc--------------ccccC-----------------------------------------CCceE-eeh
Confidence 00 00000 01111 122
Q ss_pred HHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCcccccccccccccc
Q psy3762 377 LILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHH 456 (595)
Q Consensus 377 ~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~ 456 (595)
.+.-+++.+.|.+.||.--+. .-.++.||.|-.+... ..|..+-+||.. .+
T Consensus 381 ~e~v~mLreaGvE~g~~dDls----Te~Ek~LG~lV~eky~-------------tdfyildkyP~a------------vR 431 (533)
T KOG0556|consen 381 KEGVAMLREAGVEMGDEDDLS----TESEKKLGQLVREKYD-------------TDFYILDKYPLA------------VR 431 (533)
T ss_pred HHHHHHHHHcCcccCCccccC----ChhHHHHHHHHHHHhC-------------CcEEEEccCccc------------cc
Confidence 233456667777777643332 2345788885333222 345667779985 49
Q ss_pred CC-CCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCc
Q psy3762 457 PF-TAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPH 535 (595)
Q Consensus 457 PF-~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh 535 (595)
|| |||.. .|| .++++||+++.|.||.+|+||+|||+.+.++++.+|+++. ..+.|+++|+||||||
T Consensus 432 PFYTmpd~-------~~p--~ySnSyD~fmRGeEIlSGAQRIhdpe~L~era~~hGid~~----~i~~YidsFryG~PPH 498 (533)
T KOG0556|consen 432 PFYTMPDP-------ENP--RYSNSYDFFMRGEEILSGAQRIHDPELLVERAKEHGIDPS----KISTYIDSFRYGAPPH 498 (533)
T ss_pred cccccCCC-------CCC--CcccchhheechhhhhccccccCCHHHHHHHHHHcCCCHH----HHHHHHHHhccCCCCC
Confidence 99 58875 666 6899999999999999999999999999999999999996 4677999999999999
Q ss_pred cceeccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 536 GGIAFGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 536 ~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
||+|||+||++|+++|+.|||..++|||+|+.
T Consensus 499 aGgGIGLERvvmlyl~L~nIR~~SlFPRDPkR 530 (533)
T KOG0556|consen 499 AGGGIGLERVVMLYLGLNNIRKTSLFPRDPKR 530 (533)
T ss_pred CCCcccHHHHHHHHhcCCcchhhccCCCCccc
Confidence 99999999999999999999999999999975
No 26
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-82 Score=669.03 Aligned_cols=431 Identities=25% Similarity=0.446 Sum_probs=348.4
Q ss_pred ccccccccccccCC----------CEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--HHHH-HHhcCCCCcE
Q psy3762 2 RTHYCGNITEKLLD----------QVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYK-IAKIIRNEFC 68 (595)
Q Consensus 2 ~t~~~~~l~~~~~g----------~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~~~~-~~~~l~~es~ 68 (595)
++|++.++..++.+ ..|+|+|||.++|.+||++|++|.|++|++|++++++.. +.++ +.+.+..||+
T Consensus 38 ~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~gkiQ~yi~k~~~~~~~~~~~~~~~dlGDi 117 (502)
T COG1190 38 RTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSGKIQLYVNKDEVGEEVFEALFKKLDLGDI 117 (502)
T ss_pred ccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCceEEEEEeccccchhhHHHHHhccccCCE
Confidence 57777777766543 239999999999999999999999999999999998752 4555 5677899999
Q ss_pred EEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHHH
Q psy3762 69 LQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKVT 146 (595)
Q Consensus 69 V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i~ 146 (595)
|.|+|.+..+ ++|+++|.|+++++|++|. ++|-.... .++.++|+++||+|+- ++..+.+|..||.|+
T Consensus 118 igv~G~~~~T---------~~GelSv~v~~~~lLsKsL~pLPeK~hg-L~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii 187 (502)
T COG1190 118 IGVEGPLFKT---------KTGELSVSVEELRLLSKSLRPLPEKFHG-LTDKEIRYRQRYLDLIVNPESRQTFIKRSKII 187 (502)
T ss_pred Eeeeeeeeec---------CCCceEEEEEEEeeecccCCCCChhhcC-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999886 5799999999999999997 67766665 6788999999999998 688999999999999
Q ss_pred HHHHHHhhhCCCeeccCceeecCCCCC-CccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCC
Q psy3762 147 MEVRKFLDSKKFIEIETPILSKSTPEG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSD 225 (595)
Q Consensus 147 ~~iR~ff~~~gF~EV~TPiL~~~~~~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~ 225 (595)
++||+||.++||+||+||+|.....+. |++|..-.+ ..+.-+||++|||||+|+|+++|++|||+||++||||+.+++
T Consensus 188 ~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhN-ald~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid~t 266 (502)
T COG1190 188 RAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHN-ALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTT 266 (502)
T ss_pred HHHHHHHHHCCCeEeccccccccCCCcccccceeeec-ccCCceEEeeccHHHHHHHHhcCchhheeeccccccCCCccc
Confidence 999999999999999999999764332 455542221 122347999999999999999999999999999999999999
Q ss_pred CCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC----------CCCCCCccccHHHHHHHhCCCC-Cccccchhh
Q psy3762 226 RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI----------KLPNPFPVIEWSTAIKLYGSDK-PDMCIKLIF 294 (595)
Q Consensus 226 r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~----------~~~~~f~rity~ea~~~~~~d~-p~lr~~~~~ 294 (595)
|+|||||||+|++|+|++|+|+++|+|+++++..+.+. ++..||+|+++.+|+..+.+.+ .++
T Consensus 267 HNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~~------ 340 (502)
T COG1190 267 HNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDDL------ 340 (502)
T ss_pred cCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCcccccc------
Confidence 99999999999999999999999999999999999862 4567999999999999886531 110
Q ss_pred cchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCccccccc
Q psy3762 295 TDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYF 374 (595)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 374 (595)
...+++.++++..+.+...... |
T Consensus 341 ---------------------------------------~~~e~~~~~ak~~~i~~~~~~~-----~------------- 363 (502)
T COG1190 341 ---------------------------------------FDDEEAKELAKKHGIEVEKYGT-----W------------- 363 (502)
T ss_pred ---------------------------------------CCHHHHHHHHHHhCCCcCcccc-----c-------------
Confidence 1233455555554432110000 0
Q ss_pred CHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccc
Q psy3762 375 NNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIA 453 (595)
Q Consensus 375 ~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a 453 (595)
+....++++++. ++ +....|+||+|||...
T Consensus 364 ------------------------~~g~ll~~lFe~---------------~vE~~liqPTFv~d~P~ei---------- 394 (502)
T COG1190 364 ------------------------GLGHLLNELFEE---------------LVEAKLIQPTFVTDHPVEI---------- 394 (502)
T ss_pred ------------------------cHHHHHHHHHHH---------------HhhhhhcCCceeecCcccc----------
Confidence 000111222221 12 2356799999999853
Q ss_pred cccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc----CCChhhhhhcHHHHHHHhh
Q psy3762 454 RHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL----NIDNKIVKTQFGFLLNSLK 529 (595)
Q Consensus 454 ~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~----g~~~~~~~~~~~~yL~al~ 529 (595)
.|++.++. ++| ++++||||+++|.|||||+.+++||..|++||+++ ...++++....+.|++||+
T Consensus 395 --SPLak~~~-------~~p--~~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALe 463 (502)
T COG1190 395 --SPLAKRHR-------SNP--GLTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALE 463 (502)
T ss_pred --CccccCCC-------CCc--chhhhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHh
Confidence 78888764 676 78999999999999999999999999999999762 2223334466788999999
Q ss_pred CCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 530 YGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 530 ~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
|||||+||+|||+|||||+|||++||||||+||-...
T Consensus 464 yGmPPTgG~GiGIDRLvMllT~~~sIRdVilFP~mr~ 500 (502)
T COG1190 464 YGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFPAMRP 500 (502)
T ss_pred cCCCCCCCccccHHHHHHHHcCCCchhheecccccCC
Confidence 9999999999999999999999999999999997653
No 27
>KOG0554|consensus
Probab=100.00 E-value=5.9e-78 Score=612.14 Aligned_cols=393 Identities=24% Similarity=0.395 Sum_probs=327.5
Q ss_pred cccCCCEEEEEEEEEeEeccCCeEEEEEEeCCe--eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcC
Q psy3762 11 EKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTG--LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLI 88 (595)
Q Consensus 11 ~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g--~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~ 88 (595)
-...|++++|.|||+++|.+|+++|++|+||++ .+|||++++ ..+.+..|++|.|+|.+.... -.
T Consensus 16 ~~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~------~~q~la~Gt~i~~~g~l~~~~-------~~ 82 (446)
T KOG0554|consen 16 HPRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE------QSQLLATGTCISAEGVLKVSK-------GA 82 (446)
T ss_pred CCCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH------HhhhccccceEEEEeeEEecc-------ch
Confidence 346799999999999999999999999999998 599999973 457799999999999998752 14
Q ss_pred CccEEEEEeeEEEeecCCCCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeec
Q psy3762 89 SGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSK 168 (595)
Q Consensus 89 ~g~iEl~v~~i~vls~~~~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~ 168 (595)
.+++|+.+++|.+++.+++. ||+.++..+++...+..||+.|+....+++|+||.+..++++||.+++|++|+||+|+.
T Consensus 83 ~q~iel~~eki~~vG~v~~~-ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt 161 (446)
T KOG0554|consen 83 KQQIELNAEKIKVVGTVDES-YPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITT 161 (446)
T ss_pred heeeeeeeeEEEEEeecCCC-CCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeec
Confidence 67899999999999999743 66666545555544999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcc-cccccc-----CCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccccccCC
Q psy3762 169 STPEGARD-YLVPSR-----INPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFMN 241 (595)
Q Consensus 169 ~~~~ga~~-f~~~~~-----~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~~ 241 (595)
++||||++ |.+++. .+.|+..||++|.|||++. |++++.|||++||+||+|+++++||+ ||||+|.|++|++
T Consensus 162 ~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~ 240 (446)
T KOG0554|consen 162 NDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA-MACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAE 240 (446)
T ss_pred cCCCCCcceEEEEecCcccccccCCceEEEEeceehHHH-HHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHH
Confidence 99999988 655443 2456677999999999999 58999999999999999999999999 9999999999998
Q ss_pred -HHHHHHHHHHHHHHHHHHHcCCCC----------------------CCCCccccHHHHHHHhCCCCCccccchhhcchh
Q psy3762 242 -EEEIRNLFEEMIRVIFYKTLNIKL----------------------PNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLT 298 (595)
Q Consensus 242 -~~dl~~~~E~ll~~l~~~~~~~~~----------------------~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~ 298 (595)
++|+|.++|.+++++++.+++++. ..+|.+|||.||++..-... +
T Consensus 241 sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~------------t 308 (446)
T KOG0554|consen 241 SLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAV------------T 308 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhc------------c
Confidence 899999999999999999986431 13467899999887531000 0
Q ss_pred hhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHH
Q psy3762 299 NIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLI 378 (595)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (595)
..+++ ...||. +++++++++
T Consensus 309 ----------------------~~fk~--------------------------------~~kwG~-~l~~ehe~y----- 328 (446)
T KOG0554|consen 309 ----------------------KKFKT--------------------------------PPKWGI-DLSTEHEKY----- 328 (446)
T ss_pred ----------------------ccccc--------------------------------Cccccc-ccchhhHHH-----
Confidence 00000 112343 233433332
Q ss_pred HHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCccccccccc-CCCccEEEEecCCCccccccccccccccC
Q psy3762 379 LEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILN-NKWHPLWVINFPMFKYDKINNNWIARHHP 457 (595)
Q Consensus 379 ~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~-~~~~p~~V~dfP~~~~~~~~~~~~a~~~P 457 (595)
|++ ....||||+|||.- .+|
T Consensus 329 -----------------------------------------------L~~~~~~~PVfV~dYP~~------------iKp 349 (446)
T KOG0554|consen 329 -----------------------------------------------LVEECFKKPVFVTDYPKG------------IKP 349 (446)
T ss_pred -----------------------------------------------HHHHhcCCCEEEEecccc------------ccc
Confidence 221 24689999999985 499
Q ss_pred CCCCCCCCCcccccCccccccceeeEEecCE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCcc
Q psy3762 458 FTAPKDGYEDFIITNPEKIFSKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHG 536 (595)
Q Consensus 458 F~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~ 536 (595)
|||+.+ +++ ....+|||++||+ ||+|||+|+.+ .+++++.|+.++ .|+|||++++||.+|||
T Consensus 350 FYMr~n-------~~~--~tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~----~~eWYldLRryG~vphg 412 (446)
T KOG0554|consen 350 FYMRLN-------DDG--KTVAAFDLLVPGVGELIGGSLREER----KARLKERGLTRE----ELEWYLDLRRYGSVPHG 412 (446)
T ss_pred eEEEec-------CCC--CeeEEEEeecccchhhcCcccchhh----HHHHHhcCCCcc----ccceehhhhhcCCCCCC
Confidence 999985 333 3577999999999 99999999999 778888999886 58999999999999999
Q ss_pred ceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 537 GIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 537 G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
||||||||++.+++|.+||||||||||.++
T Consensus 413 GFGlGfER~lq~~tG~~nIkd~IPFpR~~~ 442 (446)
T KOG0554|consen 413 GFGLGFERMLQYLTGNDNIKDVIPFPRYPG 442 (446)
T ss_pred cccccHHHHHHHHhCCcchhhceecCCCcc
Confidence 999999999999999999999999999994
No 28
>KOG1885|consensus
Probab=100.00 E-value=9.3e-76 Score=604.59 Aligned_cols=417 Identities=24% Similarity=0.437 Sum_probs=326.2
Q ss_pred CCEEEEEEEEEeEeccC-CeEEEEEEeCCeeEEEEECCCcH----HHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCC
Q psy3762 15 DQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDI----KIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLIS 89 (595)
Q Consensus 15 g~~V~i~GwV~~~R~~g-~l~Fi~LrD~~g~lQvv~~~~~~----~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~ 89 (595)
+..|+|+|||+++|.+| |++|++|++++.+|||+++.+.. +..+..+.|+.||+|.|+|.+.++ ++
T Consensus 104 n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig~~G~pgrt---------~~ 174 (560)
T KOG1885|consen 104 NEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIGVSGYPGRT---------KS 174 (560)
T ss_pred cceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEeeecCCCcC---------CC
Confidence 55699999999999999 99999999999999999987642 344556779999999999988664 67
Q ss_pred ccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceee
Q psy3762 90 GNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILS 167 (595)
Q Consensus 90 g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~ 167 (595)
|+++|.+.++.+||+|. ++|-.... ..+.++|+++||||+. ++..+..|++|++|+..||.||.++||+||+||+|+
T Consensus 175 gELSi~~~~~~lLspcLh~lP~~~~g-LkD~EtRyrqRylDlilN~~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn 253 (560)
T KOG1885|consen 175 GELSIIPNEIILLSPCLHMLPHEHFG-LKDKETRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMN 253 (560)
T ss_pred ceEEEeecchheecchhccCChhhcC-CCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhcCceEecchhhc
Confidence 89999999999999998 67822222 4457999999999997 788999999999999999999999999999999998
Q ss_pred cCCCCC-CccccccccCCCCC---eeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccccccccccCCHH
Q psy3762 168 KSTPEG-ARDYLVPSRINPGE---FFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEE 243 (595)
Q Consensus 168 ~~~~~g-a~~f~~~~~~~~~~---~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~~ 243 (595)
..+.+. |++|. ++.+. -+||+++||||+|+|+++|++|||+||+.||||+.|.+||||||.||+|++|+|++
T Consensus 254 ~iaGGA~AkPFI----T~hndldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AYady~ 329 (560)
T KOG1885|consen 254 MIAGGATAKPFI----THHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYE 329 (560)
T ss_pred cccCccccCcee----ecccccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHHHhhHH
Confidence 764333 45553 34443 37999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCC-----------------CCCCCCccccHHHHHHHh-CCCCCccccchhhcchhhhhhccc
Q psy3762 244 EIRNLFEEMIRVIFYKTLNI-----------------KLPNPFPVIEWSTAIKLY-GSDKPDMCIKLIFTDLTNIMKDSD 305 (595)
Q Consensus 244 dl~~~~E~ll~~l~~~~~~~-----------------~~~~~f~rity~ea~~~~-~~d~p~lr~~~~~~~~~~~~~~~~ 305 (595)
|+|+++|+|++.+++.+.|. ++..||+||++-+.+++- |.+.|
T Consensus 330 dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k~lgi~l~------------------- 390 (560)
T KOG1885|consen 330 DLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEMIEELEKELGIKLP------------------- 390 (560)
T ss_pred HHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHHHhCCCCC-------------------
Confidence 99999999999999988652 345678888877777642 33322
Q ss_pred hhhHHHHhhccCCeeEEEecCCCCccchhhh-HHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHH
Q psy3762 306 FKLFSKIANMKNGRIIGLKIPGGFSISRNEI-NYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIIN 384 (595)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 384 (595)
.+..+...+. ..|..+++..+
T Consensus 391 ---------------------~~~~l~~~e~~~~L~~~~~~~~------------------------------------- 412 (560)
T KOG1885|consen 391 ---------------------PGSTLHTEETRELLKSLCVDEA------------------------------------- 412 (560)
T ss_pred ---------------------CccccCchhhHHHHHHHHHhcc-------------------------------------
Confidence 1111111111 11111111111
Q ss_pred HhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccccccCCCCCCC
Q psy3762 385 KTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKD 463 (595)
Q Consensus 385 ~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~ 463 (595)
. .++.+....++|++| .|. ++ +...+|+||.|+|... .|....+-
T Consensus 413 ---v--------~~p~p~t~arlLdKL---vg~--------flE~~cvnPTFi~~hP~im------------SPLAK~hr 458 (560)
T KOG1885|consen 413 ---V--------ECPPPRTTARLLDKL---VGE--------FLEPTCVNPTFIIDHPQIM------------SPLAKYHR 458 (560)
T ss_pred ---c--------CCCCcccHHHHHHHH---HhH--------hhccccCCCeeEcCCchhc------------Cccccccc
Confidence 0 022222333444443 111 12 3567899999999864 55544431
Q ss_pred CCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcC----CChhhhhhcHHHHHHHhhCCCCCcccee
Q psy3762 464 GYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLN----IDNKIVKTQFGFLLNSLKYGAPPHGGIA 539 (595)
Q Consensus 464 ~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g----~~~~~~~~~~~~yL~al~~G~PPh~G~g 539 (595)
+++ ++++||+|+++|.||||+|.+++||..|+.+|+++. -.++++....+.|+.|++||+||+||||
T Consensus 459 -------s~~--glteRFElFi~~kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwG 529 (560)
T KOG1885|consen 459 -------SKA--GLTERFELFIAGKEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWG 529 (560)
T ss_pred -------ccc--chhhHHHHhhhhHHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccc
Confidence 444 789999999999999999999999999999998642 2233444457889999999999999999
Q ss_pred ccHHHHHHHHcCCCCccccccCCCCC
Q psy3762 540 FGLDRLITIMTGSKSIRDVIAFPKTQ 565 (595)
Q Consensus 540 lGlDRLvm~l~g~~~IRdvi~FPr~~ 565 (595)
||+|||+|+||+..|||||++||-..
T Consensus 530 mGIDRL~MllTds~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 530 MGIDRLVMLLTDSNNIREVLLFPAMK 555 (560)
T ss_pred cchhhhhhhhcCCcchhheeeccccC
Confidence 99999999999999999999999764
No 29
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=1.4e-73 Score=602.58 Aligned_cols=322 Identities=38% Similarity=0.647 Sum_probs=256.1
Q ss_pred chhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCC-Cccccccc--cCCCCCeeeccCC
Q psy3762 118 LEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEG-ARDYLVPS--RINPGEFFALPQS 194 (595)
Q Consensus 118 ~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~g-a~~f~~~~--~~~~~~~~~L~~S 194 (595)
++++|+++||||+|++.+++++++||.|++++|+||.++||+||+||+|++++++| +..|.+.. ..+.++.+||++|
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~S 80 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQS 80 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SS
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcC
Confidence 46899999999999999999999999999999999999999999999999999888 66687652 2245677899999
Q ss_pred hHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccccccCCHHHHHHHHHHHHHHHHHHHc--------CCCC
Q psy3762 195 PQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTL--------NIKL 265 (595)
Q Consensus 195 pql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~--------~~~~ 265 (595)
||+|||+++++|++||||||||||+|++++.||+ ||||||||++|++++++|+++|++|+++++.+. +..+
T Consensus 81 pql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~~~~~~~ 160 (335)
T PF00152_consen 81 PQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKELSLNIDL 160 (335)
T ss_dssp SHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEES
T ss_pred hHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCccccccccc
Confidence 9999999999999999999999999999777777 999999999999999999999999999999886 5556
Q ss_pred CCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHH
Q psy3762 266 PNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKT 345 (595)
Q Consensus 266 ~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 345 (595)
+.+|++++|.||++.|++++|+++.+.++.++.+. .+..+
T Consensus 161 ~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~-~~~~~--------------------------------------- 200 (335)
T PF00152_consen 161 PKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEI-EELEF--------------------------------------- 200 (335)
T ss_dssp SSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHH-HHTTH---------------------------------------
T ss_pred cCCceEeeehHHHHHhhcccccchhHHHHHHHHHH-hcccc---------------------------------------
Confidence 67899999999999998888887765543332221 00000
Q ss_pred hCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHH-HHHHhcccCccccc
Q psy3762 346 YGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSA-LRIKIGYSDFGKRN 424 (595)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~-~r~~l~~~~~~~~~ 424 (595)
+. ...++. .++.++.
T Consensus 201 -----------------------~~----------------------------------~~~l~~~~e~~L~~------- 216 (335)
T PF00152_consen 201 -----------------------EV----------------------------------GRLLSEEVEPYLVE------- 216 (335)
T ss_dssp -----------------------HC----------------------------------HHHHHHHHHHHHHH-------
T ss_pred -----------------------hH----------------------------------HHHHHHHHHHHhhh-------
Confidence 00 001111 1111221
Q ss_pred ccccCCCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHH
Q psy3762 425 NILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQK 504 (595)
Q Consensus 425 ~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~ 504 (595)
.....|+||+|||... +|||++.+ +++ ..++++|||+++|+||+|||+|+||+++|+
T Consensus 217 ---~~~~~p~fI~~~P~~~------------~pf~~~~~-------~~~-~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~ 273 (335)
T PF00152_consen 217 ---KYFTDPVFITDYPAEQ------------SPFYKPPN-------DDD-PGVAERFDLYIPGGEIANGSQREHDPEELR 273 (335)
T ss_dssp ---HHSSSEEEEEEEBGGG------------STTTBBBS-------SST-TTBBSEEEEEETTEEEEEEEEB--SHHHHH
T ss_pred ---cccCCcEEEEeccccc------------Cccccccc-------ccc-cccccceeEEEeCEEEehHHhhhhHHHHHH
Confidence 1357899999999863 99999874 332 268999999999999999999999999999
Q ss_pred HHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 505 KIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 505 ~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
++|+..++++++..+.++|||+|+++|+|||||||||+|||+|+++|.+|||||++|||+++
T Consensus 274 ~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 274 ERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp HHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred HHhhhcccccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcHHheecCCCCCC
Confidence 99999998876655679999999999999999999999999999999999999999999874
No 30
>KOG0555|consensus
Probab=100.00 E-value=2.4e-71 Score=560.70 Aligned_cols=405 Identities=25% Similarity=0.409 Sum_probs=342.3
Q ss_pred ccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCcc
Q psy3762 12 KLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGN 91 (595)
Q Consensus 12 ~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~ 91 (595)
++.|+.|+|.||||+.|.+++++||+||||+|.+|||++.+..+.++ .-.|+.+|+|.|.|++++.|++. ...|+
T Consensus 120 ~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gflqCVl~~kl~~~yd-~~~Ls~essv~vYG~i~~~p~GK----~apgg 194 (545)
T KOG0555|consen 120 ENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGFLQCVLSDKLCQSYD-ALTLSTESSVTVYGTIKKLPEGK----SAPGG 194 (545)
T ss_pred cccCceEEeehhhHhhhhcCceEEEEEecCCceEEEEEcchhhhhhc-cccccccceEEEEEEEecCcCCC----CCCCC
Confidence 57899999999999999999999999999999999999987543333 34589999999999999998763 35689
Q ss_pred EEEEEeeEEEeecCCCC--CCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecC
Q psy3762 92 IEILCRELKILNSSITL--PFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKS 169 (595)
Q Consensus 92 iEl~v~~i~vls~~~~l--P~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~ 169 (595)
.||.|.-++|++.|+.. ..++.. ..+.+..|+||||-+|....+.+|+.|+.+++++|++|.+.||+||.+|.|+..
T Consensus 195 hEl~vdy~Eiig~Apag~~~n~lne-~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQT 273 (545)
T KOG0555|consen 195 HELNVDYWEIIGLAPAGGFDNPLNE-ESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQT 273 (545)
T ss_pred ceEEeeeeeeecccCCCcccccccc-cCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEE
Confidence 99999999999998743 455555 677899999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcc-ccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccccccCCHHHHHH
Q psy3762 170 TPEGARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFMNEEEIRN 247 (595)
Q Consensus 170 ~~~ga~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~~~~dl~~ 247 (595)
..||+.. |.. .|.|+..||+||+|||++.++ ..+++||+|.++||+|.++|+||+ |||++|.|++|.+++++++
T Consensus 274 QVEGGsTLFkl---dYyGEeAyLTQSSQLYLEtcl-pAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~ 349 (545)
T KOG0555|consen 274 QVEGGSTLFKL---DYYGEEAYLTQSSQLYLETCL-PALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLD 349 (545)
T ss_pred EecCcceEEee---cccCchhhccchhHHHHHHhh-hhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHH
Confidence 8887655 543 478999999999999999975 458999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC--------------CCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHh
Q psy3762 248 LFEEMIRVIFYKTLNIKL--------------PNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIA 313 (595)
Q Consensus 248 ~~E~ll~~l~~~~~~~~~--------------~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~ 313 (595)
.+|+|+...+++++.... ..||.||.|+||++... ++++
T Consensus 350 ~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~P~~PFkRm~Y~dAI~wLk--------------------e~~v------- 402 (545)
T KOG0555|consen 350 RIEALVCDSVDRLLEDPIAPLIKQLNPDFKAPKRPFKRMNYSDAIEWLK--------------------EHDV------- 402 (545)
T ss_pred HHHHHHHHHHHHHHhChhhhhHHHhCCCCCCCCCchhcCCHHHHHHHHH--------------------hcCC-------
Confidence 999999999998874321 25899999999987531 1000
Q ss_pred hccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCe
Q psy3762 314 NMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDI 393 (595)
Q Consensus 314 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~ 393 (595)
+ -++|..
T Consensus 403 -----------------------------------k--------------------------------------~edg~~ 409 (545)
T KOG0555|consen 403 -----------------------------------K--------------------------------------KEDGTD 409 (545)
T ss_pred -----------------------------------c--------------------------------------CccCcc
Confidence 0 011112
Q ss_pred EEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCc
Q psy3762 394 IFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNP 473 (595)
Q Consensus 394 ~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp 473 (595)
.-|+.+.++.+++-| .+....|+|++.||.. +++|||+.. . +||
T Consensus 410 fefGdDI~eAaER~m------------------tdtIg~PIfLtrFpve------------iKsFYM~rc-----~-dd~ 453 (545)
T KOG0555|consen 410 FEFGDDIPEAAERKM------------------TDTIGVPIFLTRFPVE------------IKSFYMKRC-----E-DDP 453 (545)
T ss_pred cccccchhhHHHHhh------------------hhhcCCceEEeecccc------------ccceeeecc-----c-Ccc
Confidence 223333333333322 1234569999999984 699999986 2 455
Q ss_pred cccccceeeEEecCE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCC
Q psy3762 474 EKIFSKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 474 ~~~~~~~fDl~~~G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~ 552 (595)
.++++.|++++|+ ||.|||+|+.|.+++.+-|+..|+|+. .|.||++.++||..||||.|||+||++||||+.
T Consensus 454 --~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~----pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r 527 (545)
T KOG0555|consen 454 --RLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPD----PYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDR 527 (545)
T ss_pred --ccceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCC----CceEEeeccccccCCCCcccccHHHHHHHHhcc
Confidence 6899999999999 999999999999999999999999997 599999999999999999999999999999999
Q ss_pred CCccccccCCCCCCccc
Q psy3762 553 KSIRDVIAFPKTQSAQC 569 (595)
Q Consensus 553 ~~IRdvi~FPr~~~~~~ 569 (595)
-+||||.+|||-. ++|
T Consensus 528 ~~vre~cLyPRfv-~RC 543 (545)
T KOG0555|consen 528 YHVREVCLYPRFV-GRC 543 (545)
T ss_pred cchhheeecchhh-ccC
Confidence 9999999999987 444
No 31
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=3.8e-68 Score=545.00 Aligned_cols=279 Identities=58% Similarity=1.085 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEeccee
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFR 218 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR 218 (595)
|++||.|++++|+||.++||+||+||+|+.++++|+++|.+++....+..|+|++|||+|||+++++|++|||+||||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR 80 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFR 80 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEecccee
Confidence 47899999999999999999999999999988999888877665545677889999999999999999999999999999
Q ss_pred cCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchh
Q psy3762 219 DEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLT 298 (595)
Q Consensus 219 ~E~~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~ 298 (595)
+|+++++||+||||+|||++|.|++|+|+++|+++++++..+.+..+..||+||||.||++.|+.+ |
T Consensus 81 ~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~~~~~p~~rity~eA~~~~~~~-~------------ 147 (280)
T cd00777 81 DEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGVELTTPFPRMTYAEAMERYGFK-F------------ 147 (280)
T ss_pred CCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCceeeHHHHHHHhCCC-C------------
Confidence 999999999999999999999999999999999999999999887666799999999999877521 1
Q ss_pred hhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHH
Q psy3762 299 NIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLI 378 (595)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (595)
T Consensus 148 -------------------------------------------------------------------------------- 147 (280)
T cd00777 148 -------------------------------------------------------------------------------- 147 (280)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCC
Q psy3762 379 LEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPF 458 (595)
Q Consensus 379 ~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF 458 (595)
.|++|||..++..+..++.+.+|||
T Consensus 148 -------------------------------------------------------~~~~d~~~~~~~~~~~~~~~~~~pf 172 (280)
T cd00777 148 -------------------------------------------------------LWIVDFPLFEWDEEEGRLVSAHHPF 172 (280)
T ss_pred -------------------------------------------------------ccccCCcccCChhHHHHHHHHhCCC
Confidence 0111111110000111122234677
Q ss_pred CCCCC-CCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccc
Q psy3762 459 TAPKD-GYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGG 537 (595)
Q Consensus 459 ~~~~~-~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G 537 (595)
+++.. +..... .+|...+++||||+++|+||+|||+|+|||++|+++|+..|++++++.+.|+|||+|++||+|||||
T Consensus 173 ~~~~~~~~~~~~-~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G 251 (280)
T cd00777 173 TAPKEEDLDLLE-KDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGG 251 (280)
T ss_pred cCCCcccchhhh-cCCccCeeEEEEEEeCCEEEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCe
Confidence 76654 211111 3453368999999999999999999999999999999999999877777899999999999999999
Q ss_pred eeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 538 IAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 538 ~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
||||||||+|++||.+|||||++|||++.
T Consensus 252 ~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 252 IALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred EeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 99999999999999999999999999863
No 32
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=3.4e-67 Score=549.17 Aligned_cols=301 Identities=34% Similarity=0.554 Sum_probs=247.8
Q ss_pred cchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCCC-ccccccccCCCCCeeeccCCh
Q psy3762 117 ILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGA-RDYLVPSRINPGEFFALPQSP 195 (595)
Q Consensus 117 ~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga-~~f~~~~~~~~~~~~~L~~Sp 195 (595)
++.++|+++||||+|++..++++++|+.|++++|+||.++||+||+||+|+.++++++ ..|.+. +.++.+||++||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~---~~~~~~yL~~Sp 78 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVS---YFGKPAYLAQSP 78 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccc---cCCCcceecCCH
Confidence 4678999999999999999999999999999999999999999999999999888774 445442 467788999999
Q ss_pred HHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccccccC-CHHHHHHHHHHHHHHHHHHHcCC----------
Q psy3762 196 QLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFM-NEEEIRNLFEEMIRVIFYKTLNI---------- 263 (595)
Q Consensus 196 ql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~-~~~dl~~~~E~ll~~l~~~~~~~---------- 263 (595)
|+|||+++++ ++|||+||||||+|++++.||+ ||||||||++|+ +++|+|+++|++++++++.+.+.
T Consensus 79 ql~lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~ 157 (322)
T cd00776 79 QLYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ 157 (322)
T ss_pred HHHHHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhc
Confidence 9999998776 9999999999999999987665 999999999999 99999999999999999866421
Q ss_pred ------CCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhH
Q psy3762 264 ------KLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEIN 337 (595)
Q Consensus 264 ------~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 337 (595)
.+..||+||||.||++.+....+.
T Consensus 158 ~~~~~~~~~~~~~rit~~eA~~~l~~~~~~-------------------------------------------------- 187 (322)
T cd00776 158 LNRELLKPLEPFPRITYDEAIELLREKGVE-------------------------------------------------- 187 (322)
T ss_pred cCcccccCCCCceEEEHHHHHHHHHHcCCC--------------------------------------------------
Confidence 224689999999999875221110
Q ss_pred HHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcc
Q psy3762 338 YYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGY 417 (595)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~ 417 (595)
.+..||. .+ +.+ .++.| +.
T Consensus 188 -------------------~~~~~~~-~l--------~~~--------------------------~e~~l-------~~ 206 (322)
T cd00776 188 -------------------EEVKWGE-DL--------STE--------------------------HERLL-------GE 206 (322)
T ss_pred -------------------CCCCccc-hh--------cHH--------------------------HHHHH-------HH
Confidence 0000010 00 000 01111 11
Q ss_pred cCcccccccccCCCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCccccccceeeEEecC-EEEeecccc
Q psy3762 418 SDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIING-WEIGGGSIR 496 (595)
Q Consensus 418 ~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G-~Ei~gGs~R 496 (595)
. -...|+||+|||.. .+|||++.+ . ++| .++++|||+++| .||+|||+|
T Consensus 207 -----~-----~~~~p~fi~~~P~~------------~~pfy~~~~-----~-~~~--~~~~~fdl~~~G~~El~~g~~r 256 (322)
T cd00776 207 -----I-----VKGDPVFVTDYPKE------------IKPFYMKPD-----D-DNP--ETVESFDLLMPGVGEIVGGSQR 256 (322)
T ss_pred -----H-----hCCCcEEEECCccc------------cCCceeeec-----C-CCC--CeeEEEEEEcCCCeEEeeceee
Confidence 0 01569999999985 389988653 1 444 689999999999 899999999
Q ss_pred cCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 497 IHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 497 ~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
+||+++|+++|+..|++++ .++|||+|+++|+|||||||||||||+|+++|.+|||||++|||+++
T Consensus 257 ~~d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 322 (322)
T cd00776 257 IHDYDELEERIKEHGLDPE----SFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322 (322)
T ss_pred cCCHHHHHHHHHHcCCChH----HHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999876 47899999999999999999999999999999999999999999974
No 33
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=7.6e-66 Score=540.98 Aligned_cols=302 Identities=24% Similarity=0.336 Sum_probs=244.1
Q ss_pred cchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCCCcc-----ccccccCCCCCeeec
Q psy3762 117 ILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARD-----YLVPSRINPGEFFAL 191 (595)
Q Consensus 117 ~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~-----f~~~~~~~~~~~~~L 191 (595)
...++|++||++++|++.++++|++||.|++++|+||.++||+||+||+|++++++|+.. +......+.|+.+||
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL 87 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYL 87 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceee
Confidence 456889999999999999999999999999999999999999999999999987765322 333223356788999
Q ss_pred cCChHHHHHHHHhhCCCceEEEecceecCCCCC---CCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC-----
Q psy3762 192 PQSPQLFKQLLMVANFDRYYQITKCFRDEDLRS---DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI----- 263 (595)
Q Consensus 192 ~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~---~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~----- 263 (595)
++|||+|||++ ++|++||||||||||||++++ +|++||||||||++|.+++|+|+++|++++++++.+.+.
T Consensus 88 ~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~i 166 (335)
T PRK06462 88 ADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDEL 166 (335)
T ss_pred ccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999997775 677999999999999999998 555599999999999999999999999999999866532
Q ss_pred --------CCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhh
Q psy3762 264 --------KLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNE 335 (595)
Q Consensus 264 --------~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (595)
.+..||+||||.||++.+.....+
T Consensus 167 ~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~------------------------------------------------ 198 (335)
T PRK06462 167 EFFGRDLPHLKRPFKRITHKEAVEILNEEGCR------------------------------------------------ 198 (335)
T ss_pred HhcCCccccCCCCCeEEEHHHHHHHHHhcCCC------------------------------------------------
Confidence 123689999999998743110000
Q ss_pred hHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHh
Q psy3762 336 INYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKI 415 (595)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l 415 (595)
.+..+.++.+. ++. +
T Consensus 199 --------------------------------~~~~~~l~~~~--------------------------E~~-------l 213 (335)
T PRK06462 199 --------------------------------GIDLEELGSEG--------------------------EKS-------L 213 (335)
T ss_pred --------------------------------cchHHHHhHHH--------------------------HHH-------H
Confidence 00000000000 011 1
Q ss_pred cccCcccccccccCCCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCccccccceeeEEec-CE-EEeec
Q psy3762 416 GYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIIN-GW-EIGGG 493 (595)
Q Consensus 416 ~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~-G~-Ei~gG 493 (595)
+. ....|+||+|||.. .+|||++.+ . ++| .++++|||+++ |+ ||+||
T Consensus 214 ~~-----------~~~~p~fi~~yP~~------------~~pfy~~~~-----~-~~~--~~~~rFdL~~~~g~gEl~~g 262 (335)
T PRK06462 214 SE-----------HFEEPFWIIDIPKG------------SREFYDRED-----P-ERP--GVLRNYDLLLPEGYGEAVSG 262 (335)
T ss_pred HH-----------HhCCCEEEECCChh------------hCCcccccC-----C-CCC--CEEEEEEEEeeCCCcEEeee
Confidence 11 12569999999985 389998653 1 454 68999999995 54 99999
Q ss_pred ccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 494 SIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 494 s~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
++|+|+++++.++++..|++++ .++|||+|++||+|||||||||+|||+|+++|.+|||||++|||+++.
T Consensus 263 ~er~~~~~~l~~~~~~~g~~~~----~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv~~FPr~~g~ 332 (335)
T PRK06462 263 GEREYEYEEIVERIREHGVDPE----KYKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPGI 332 (335)
T ss_pred EEEecCHHHHHHHHHHcCCChH----HHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchheeeeccCCCCC
Confidence 9999999999999999999876 478999999999999999999999999999999999999999999964
No 34
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.2e-64 Score=531.08 Aligned_cols=311 Identities=24% Similarity=0.420 Sum_probs=235.6
Q ss_pred cHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCC-CccccccccCCCCCeeeccCChHHHHHHHHhhCCCce
Q psy3762 132 YKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRY 210 (595)
Q Consensus 132 ~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rv 210 (595)
++.+++++++||.+++++|+||.++||+||+||+|+++++++ +..|.+. ..+.+..+||+||||+|+|+++++|++||
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~-~~~~~~~~yL~~Spql~~k~ll~~g~~~v 79 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH-HNALDMDLYLRIAPELYLKRLIVGGFERV 79 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec-cCCCCcceeeccCHHHHHHHHHhcCCCcE
Confidence 467899999999999999999999999999999999776544 3446443 23456778999999999999999999999
Q ss_pred EEEecceecCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC----------CCCCCCccccHHHHHHH
Q psy3762 211 YQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI----------KLPNPFPVIEWSTAIKL 280 (595)
Q Consensus 211 f~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~----------~~~~~f~rity~ea~~~ 280 (595)
|+||||||+|+++++|++||||||||+++.+++|+|+++|++++++++.+.+. ....||+|+||.||+++
T Consensus 80 f~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~ 159 (329)
T cd00775 80 YEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALKE 159 (329)
T ss_pred EEEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCCccccCCCCceEEEHHHHHHH
Confidence 99999999999987666699999999999999999999999999999887752 22368999999999998
Q ss_pred hCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccc
Q psy3762 281 YGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKIS 360 (595)
Q Consensus 281 ~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (595)
+.+..+..- +.. ........+ -+..+
T Consensus 160 ~~g~~~~~~--------~~~------------------------------~~~~~~~~~---~~~~~------------- 185 (329)
T cd00775 160 KTGIDFPEL--------DLE------------------------------QPEELAKLL---AKLIK------------- 185 (329)
T ss_pred HhCCCcccc--------ccc------------------------------CCHHHHHHH---HHHcC-------------
Confidence 844322100 000 000000000 00000
Q ss_pred cccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecC
Q psy3762 361 KEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFP 440 (595)
Q Consensus 361 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP 440 (595)
.+.++ ..+........++. .+. +....|+||+|||
T Consensus 186 ---------------------------~~~~~----~~~~~~~l~~l~~~---~ve-----------~~~~~p~fi~~yP 220 (329)
T cd00775 186 ---------------------------EKIEK----PRTLGKLLDKLFEE---FVE-----------PTLIQPTFIIDHP 220 (329)
T ss_pred ---------------------------CCCCC----CCCHHHHHHHHHHH---Hhc-----------cccCCCEEEECCC
Confidence 00000 00000011111111 111 2334799999999
Q ss_pred CCccccccccccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc------CCCh
Q psy3762 441 MFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL------NIDN 514 (595)
Q Consensus 441 ~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~------g~~~ 514 (595)
.. .+||||+.+ +|| .++++|||+++|+||+|||+|+||+++|+++|+.. |.++
T Consensus 221 ~~------------~~~f~~~~~-------~~~--~~~~rfdl~~~G~Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~ 279 (329)
T cd00775 221 VE------------ISPLAKRHR-------SNP--GLTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDE 279 (329)
T ss_pred hH------------hCcCcCcCC-------CCC--CeeEEEEeEECCEEEEcccchhCCHHHHHHHHHHHHHHHHcCCCc
Confidence 85 389998764 565 68999999999999999999999999999999863 5544
Q ss_pred hhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCC
Q psy3762 515 KIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQ 565 (595)
Q Consensus 515 ~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~ 565 (595)
.. ..++|||+|++||+|||||||||+|||+|+++|.+|||||++||++.
T Consensus 280 ~~--~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 280 AM--MMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred cc--cchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 32 24689999999999999999999999999999999999999999986
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=4.6e-63 Score=504.63 Aligned_cols=257 Identities=41% Similarity=0.738 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCC-CccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecce
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCF 217 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~F 217 (595)
+++||.+++++|+||.++||+||+||+|+.+.+++ +..|.+.+. ..|..+||++|||+|+|+++++|++|||+|||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~-~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~f 79 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYN-ALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNF 79 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeec-CCCCcEEeecCHHHHHHHHHhcCCCcEEEEecce
Confidence 47899999999999999999999999999876654 444655432 2477899999999999999999999999999999
Q ss_pred ecCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCC----------CCCCCccccHHHHHHHhCCCCCc
Q psy3762 218 RDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIK----------LPNPFPVIEWSTAIKLYGSDKPD 287 (595)
Q Consensus 218 R~E~~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~----------~~~~f~rity~ea~~~~~~d~p~ 287 (595)
|+|+.+.+|.+||||+|||++|.+++|+|+++|++++++++.+.+.+ +..||+||||.||++.|
T Consensus 80 R~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~rit~~ea~~~~------ 153 (269)
T cd00669 80 RNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELEDFGLPFPRLTYREALERY------ 153 (269)
T ss_pred eCCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccccccccccccCCCceEeeHHHHHHHh------
Confidence 99966666666999999999999999999999999999998876532 22355555555544321
Q ss_pred cccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCC
Q psy3762 288 MCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLK 367 (595)
Q Consensus 288 lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 367 (595)
T Consensus 154 -------------------------------------------------------------------------------- 153 (269)
T cd00669 154 -------------------------------------------------------------------------------- 153 (269)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccc
Q psy3762 368 SPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKI 447 (595)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~ 447 (595)
..|+||+|||...
T Consensus 154 ---------------------------------------------------------------~~p~fi~d~P~~~---- 166 (269)
T cd00669 154 ---------------------------------------------------------------GQPLFLTDYPAEM---- 166 (269)
T ss_pred ---------------------------------------------------------------CCceEEECCCccc----
Confidence 1489999999853
Q ss_pred cccccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHH
Q psy3762 448 NNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNS 527 (595)
Q Consensus 448 ~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~a 527 (595)
+|||+..+ . ++| .++++|||+++|+||+|||+|+||+++|+++|++.|++++...+.|+|||+|
T Consensus 167 --------~~fy~~~~-----~-~~~--~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a 230 (269)
T cd00669 167 --------HSPLASPH-----D-VNP--EIADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKA 230 (269)
T ss_pred --------CCCCCCcC-----C-CCC--CeEEEEEEeeCCEEEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHH
Confidence 78877542 0 444 7899999999999999999999999999999999999887545579999999
Q ss_pred hhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCC
Q psy3762 528 LKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQ 565 (595)
Q Consensus 528 l~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~ 565 (595)
++||+|||||||||+|||+|+++|.+|||||++|||++
T Consensus 231 ~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 231 LEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred HHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 99999999999999999999999999999999999986
No 36
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=8.6e-63 Score=511.70 Aligned_cols=292 Identities=22% Similarity=0.410 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecC-CCC-CCcccccccc--CCCCCeeeccCChHHHHHHHHhhCCCceEEEe
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKS-TPE-GARDYLVPSR--INPGEFFALPQSPQLFKQLLMVANFDRYYQIT 214 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~-~~~-ga~~f~~~~~--~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~ 214 (595)
|++|+.+++++|+||.++||+||+||+|+.+ ..+ +++.|.+.+. ...++..||++|||+|+|+++++|++|||+||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 5789999999999999999999999999987 343 4666654321 12345689999999999999999999999999
Q ss_pred cceecCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhh
Q psy3762 215 KCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIF 294 (595)
Q Consensus 215 ~~FR~E~~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~ 294 (595)
||||||+++++|++||||||||++|.+++|+|+++|++++++++. +..||++|||.||+++|.+.++. +
T Consensus 81 p~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~-----~~~~~~~it~~ea~~~~~~~~~~-~----- 149 (304)
T TIGR00462 81 KVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD-----PFAPWERLSYQEAFLRYAGIDPL-T----- 149 (304)
T ss_pred CceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh-----cCCCcEEEEHHHHHHHHhCCCcc-c-----
Confidence 999999998666669999999999999999999999999999975 24689999999999988554321 0
Q ss_pred cchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCccccccc
Q psy3762 295 TDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYF 374 (595)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 374 (595)
...+++.+++++.|.+ +.
T Consensus 150 ---------------------------------------~~~~~~~~~~~~~g~~------~~----------------- 167 (304)
T TIGR00462 150 ---------------------------------------ASLDELAAAAAAHGVR------AS----------------- 167 (304)
T ss_pred ---------------------------------------CCHHHHHHHHHHcCCC------CC-----------------
Confidence 0111222233332210 00
Q ss_pred CHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHH-HHHHhcccCcccccccccCCCccEEEEecCCCccccccccccc
Q psy3762 375 NNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSA-LRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIA 453 (595)
Q Consensus 375 ~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~-~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a 453 (595)
.+ .+.....++.+++ +++.++. ..|+||+|||..
T Consensus 168 ---------------~~------~d~~~~~e~~l~~~ie~~~~~-------------~~p~fi~~yP~~----------- 202 (304)
T TIGR00462 168 ---------------EE------DDRDDLLDLLFSEKVEPHLGF-------------GRPTFLYDYPAS----------- 202 (304)
T ss_pred ---------------CC------CChhHHHHHHHHHHHHHhcCC-------------CCCEEEEcCccc-----------
Confidence 00 0111122344544 2333332 569999999985
Q ss_pred cccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHH-------cCCChhhhhhcHHHHHH
Q psy3762 454 RHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKV-------LNIDNKIVKTQFGFLLN 526 (595)
Q Consensus 454 ~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~-------~g~~~~~~~~~~~~yL~ 526 (595)
.+|||++.+ +|| .+++||||+++|+||+||++|+||+++|+++|+. .|+++.+ -++|||+
T Consensus 203 -~~~~~~~~~-------~~~--~~~~rfdl~~~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~---~d~~yl~ 269 (304)
T TIGR00462 203 -QAALARISP-------DDP--RVAERFELYIKGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYP---LDERFLA 269 (304)
T ss_pred -cCcCccccC-------CCC--CeeEEEEEEECCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcch---hhHHHHH
Confidence 389987653 555 6899999999999999999999999999999976 6777653 2378999
Q ss_pred HhhCCCCCccceeccHHHHHHHHcCCCCccccccC
Q psy3762 527 SLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAF 561 (595)
Q Consensus 527 al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~F 561 (595)
|++||+|||||||||||||+|+++|.+|||||++|
T Consensus 270 ~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 270 ALEAGLPECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred HHHcCCCCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 99999999999999999999999999999999998
No 37
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=3.4e-58 Score=477.73 Aligned_cols=291 Identities=23% Similarity=0.378 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCCC--ccccccccC---CCCCeeeccCChHHHHHHHHhhCCCce
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGA--RDYLVPSRI---NPGEFFALPQSPQLFKQLLMVANFDRY 210 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga--~~f~~~~~~---~~~~~~~L~~Spql~~q~ll~~g~~rv 210 (595)
..+|++|+.|++++|+||.++||+||+||+|+..+..++ .+|.+.+.. ..|..+||+||||+++|+++++|++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 468999999999999999999999999999987654443 224332210 236778999999999999989999999
Q ss_pred EEEecceecCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCcccc
Q psy3762 211 YQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCI 290 (595)
Q Consensus 211 f~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~ 290 (595)
|+||||||+|+++++|.+||||+|||++|.+++|+|+++|+|++++++. .+|++++|.||+++|.+.++. .
T Consensus 82 f~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~-------~~~~~i~~~eaf~~~~g~~~~-~- 152 (306)
T PRK09350 82 FQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC-------EPAESLSYQQAFLRYLGIDPL-S- 152 (306)
T ss_pred EEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc-------CCceEEEHHHHHHHHhCCCCC-c-
Confidence 9999999999995555559999999999999999999999999999852 589999999999998554321 0
Q ss_pred chhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCccc
Q psy3762 291 KLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPI 370 (595)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 370 (595)
.....+.+.++..|... ..++.
T Consensus 153 -------------------------------------------~~~~~~~~~~~~~g~~~---------------~~~~~ 174 (306)
T PRK09350 153 -------------------------------------------ADKTQLREVAAKLGLSN---------------IADEE 174 (306)
T ss_pred -------------------------------------------CCHHHHHHHHHHcCCCC---------------cCCCC
Confidence 00112222222222100 00000
Q ss_pred ccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHH-HHHHhcccCcccccccccCCCccEEEEecCCCccccccc
Q psy3762 371 IKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSA-LRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINN 449 (595)
Q Consensus 371 ~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~-~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~ 449 (595)
.+.....+.+++. +++.++. ..|+||+|||...
T Consensus 175 ---------------------------~~~~~~~~~l~~~~ve~~l~~-------------~~p~fi~~yP~~~------ 208 (306)
T PRK09350 175 ---------------------------EDRDTLLQLLFTFGVEPNIGK-------------EKPTFVYHFPASQ------ 208 (306)
T ss_pred ---------------------------CCHHHHHHHHHHHHHHHhcCC-------------CCCEEEEcCcccc------
Confidence 0001122334443 3444443 4699999999853
Q ss_pred cccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHH-------cCCChhhhhhcH-
Q psy3762 450 NWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKV-------LNIDNKIVKTQF- 521 (595)
Q Consensus 450 ~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~-------~g~~~~~~~~~~- 521 (595)
+||+++.+ ++| .++++|||+++|+||+|||+|+||+++|+++|+. .|+++.+ +
T Consensus 209 ------~~~a~~~~-------~~~--~~~~rfdl~i~G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~----~d 269 (306)
T PRK09350 209 ------AALAKIST-------EDH--RVAERFEVYFKGIELANGFHELTDAREQRQRFEQDNRKRAARGLPQQP----ID 269 (306)
T ss_pred ------CccccccC-------CCC--CeeEEEEEEECCEEEecchhhcCCHHHHHHHHHHHHHHHHhCCCCccc----Cc
Confidence 78988764 565 7899999999999999999999999999999975 5666553 4
Q ss_pred HHHHHHhhCCCCCccceeccHHHHHHHHcCCCCcccc
Q psy3762 522 GFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDV 558 (595)
Q Consensus 522 ~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdv 558 (595)
.|||+|++||+|||||||||||||+|+++|++|||||
T Consensus 270 ~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 270 ENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred HHHHHHHHcCCCCCCceEecHHHHHHHHcCCCCcccC
Confidence 5799999999999999999999999999999999997
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-52 Score=409.58 Aligned_cols=295 Identities=21% Similarity=0.341 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCCCc--cccccccC---CCCCeeeccCChHHHHHHHHhhCCCceE
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGAR--DYLVPSRI---NPGEFFALPQSPQLFKQLLMVANFDRYY 211 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~--~f~~~~~~---~~~~~~~L~~Spql~~q~ll~~g~~rvf 211 (595)
+.+..|+.|+.+||.||.++||+||+||.|+.+...... .|...+.. .++..+||++|||+++|+|+++|.++||
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~if 93 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIF 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcch
Confidence 458899999999999999999999999999987655432 23322221 1246789999999999999999999999
Q ss_pred EEecceecCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccc
Q psy3762 212 QITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIK 291 (595)
Q Consensus 212 ~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~ 291 (595)
|||+||||++.+..|||||||||||.++.+++-+|+.+.+|++.+++. .+++++||+|||.+|.+.+|--
T Consensus 94 ql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~-------~~~E~ls~~eaF~r~~gid~l~--- 163 (322)
T COG2269 94 QLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLEC-------VEAERLSYQEAFLRYLGIDPLS--- 163 (322)
T ss_pred hhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHcc-------CCcceeeHHHHHHHHhCCCccc---
Confidence 999999999999999999999999999999999999999999999852 4689999999999996655410
Q ss_pred hhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccc
Q psy3762 292 LIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPII 371 (595)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 371 (595)
..-..+.+.++..|.. .
T Consensus 164 ------------------------------------------~~~~~L~~~~~~~~l~------------------~--- 180 (322)
T COG2269 164 ------------------------------------------ADKTELREAAAKLGLS------------------A--- 180 (322)
T ss_pred ------------------------------------------ccHHHHHHHHHhcCCC------------------C---
Confidence 0112233333332211 0
Q ss_pred cccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHH-HHHHhcccCcccccccccCCCccEEEEecCCCcccccccc
Q psy3762 372 KYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSA-LRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNN 450 (595)
Q Consensus 372 ~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~-~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~ 450 (595)
-++++.+.|+ +.++-. +++.+|. .+|++|+|||..+ +.
T Consensus 181 --~~~~~~d~L~---------------------~~lf~~~VEP~lg~-------------~rpt~ly~fP~~q-----aa 219 (322)
T COG2269 181 --ATDEDWDTLL---------------------QLLFVEGVEPNLGK-------------ERPTFLYHFPASQ-----AA 219 (322)
T ss_pred --CCccCHHHHH---------------------HHHHHhhcCcccCC-------------CCceEEEeCcHHH-----HH
Confidence 0011222222 233333 5566665 7899999999853 11
Q ss_pred ccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHH-------cCCChhhhhhcHHH
Q psy3762 451 WIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKV-------LNIDNKIVKTQFGF 523 (595)
Q Consensus 451 ~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~-------~g~~~~~~~~~~~~ 523 (595)
+ ....+ .|| .++++|+||+.|+||+||+.+++|+++|+++|+. .|...-+ -.+.
T Consensus 220 L-------A~i~~-------~D~--rVAERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~p---iDe~ 280 (322)
T COG2269 220 L-------AQIST-------GDP--RVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYP---IDED 280 (322)
T ss_pred h-------hccCC-------CCc--chhhhhhheeeeeeecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCC---CCHH
Confidence 1 12221 566 7899999999999999999999999999999975 2333333 3457
Q ss_pred HHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCC
Q psy3762 524 LLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQ 565 (595)
Q Consensus 524 yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~ 565 (595)
||.|+.. ||||+|+|||+|||+|+++|.++|.|||+||...
T Consensus 281 fl~Ala~-mP~cSGvALG~DRLvmLalg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 281 FLAALAR-MPPCSGVALGFDRLVMLALGAESIDDVIAFPVAR 321 (322)
T ss_pred HHHHHHh-CCCcccceecHHHHHHHHcCcchHHHHhhccccc
Confidence 9999999 9999999999999999999999999999999864
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.93 E-value=1.4e-25 Score=206.54 Aligned_cols=133 Identities=50% Similarity=0.921 Sum_probs=116.0
Q ss_pred ccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCC
Q psy3762 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNK 81 (595)
Q Consensus 2 ~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 81 (595)
+||+|+++...+.|+.|+|+|||+++|.+|+++|++|||++|.+|+|+..+..+.+++++.|+.||+|.|+|++..++.+
T Consensus 1 ~~~~~~~~~~~~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g~~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G~~~~~~~~ 80 (135)
T cd04317 1 RTHYCGELRESHVGQEVTLCGWVQRRRDHGGLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARPEG 80 (135)
T ss_pred CceehhhCChhHCCCEEEEEEeEehhcccCCEEEEEEecCCeeEEEEEeCCchhHHHHHhCCCCccEEEEEEEEECCCcc
Confidence 58999999988999999999999999999999999999999999999986644336788899999999999999987654
Q ss_pred CCCCCcCCccEEEEEeeEEEeecCCCCCCccccc-CcchhhhccccchhhccHh
Q psy3762 82 TNNTNLISGNIEILCRELKILNSSITLPFQIDEK-NILEVTNLKYRVLYLRYKH 134 (595)
Q Consensus 82 ~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~-~~~~~~r~~~r~l~lr~~~ 134 (595)
..++.+..|++||++++++++|+|.++|+..++. ..+.++|++|||||||++.
T Consensus 81 ~~~~~~~~~~~El~~~~i~vl~~~~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 81 TVNPKLPTGEIEVVASELEVLNKAKTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred ccCCCCCCCcEEEEEeEEEEEECCCCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 4555566789999999999999997778877553 4578999999999999875
No 40
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.85 E-value=1.1e-20 Score=167.26 Aligned_cols=104 Identities=24% Similarity=0.373 Sum_probs=89.1
Q ss_pred EEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc--HHHHHHHhc-CCCCcEEEEEeEEEeCCCCCCCCCcCCccEE
Q psy3762 17 VISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND--IKIYKIAKI-IRNEFCLQIIGKVCSRPNKTNNTNLISGNIE 93 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~--~~~~~~~~~-l~~es~V~V~G~v~~~~~~~~~~~~~~g~iE 93 (595)
+|+|+|||+++|.+|+++|++|||+++.+|||++.+. .+.+..+.+ |+.||+|.|+|++..++ +|++|
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~---------~g~~E 71 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTK---------TGELS 71 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecC---------CCCEE
Confidence 4899999999999999999999999999999997653 344544455 99999999999999863 47899
Q ss_pred EEEeeEEEeecCC-CCCCcccccCcchhhhccccchhh
Q psy3762 94 ILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYL 130 (595)
Q Consensus 94 l~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~l 130 (595)
|++++++|+|+|. ++|+...+ ..++++|+++||||+
T Consensus 72 l~~~~~~ils~~~~plP~~~~~-~~~~~~r~~~R~ldl 108 (108)
T cd04322 72 IFVKEFTLLSKSLRPLPEKFHG-LTDVETRYRQRYLDL 108 (108)
T ss_pred EEeCEeEEeeccCCCCCCCccC-cCChhheeecccccC
Confidence 9999999999996 67776655 467899999999985
No 41
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.84 E-value=4.5e-20 Score=163.38 Aligned_cols=103 Identities=30% Similarity=0.606 Sum_probs=91.8
Q ss_pred ccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc--HHHHHHHhcCCCCcEEEEEeEEEeCCCC
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND--IKIYKIAKIIRNEFCLQIIGKVCSRPNK 81 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~--~~~~~~~~~l~~es~V~V~G~v~~~~~~ 81 (595)
|+|++++....|++|+|+|||+++|.+|+++|++|||++|.+|+|++.+. .++++++++|+.||+|.|+|++..++..
T Consensus 1 ~~~~~l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 80 (108)
T cd04316 1 HYSAEITPELDGEEVTVAGWVHEIRDLGGIKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEPKA 80 (108)
T ss_pred CChhhCchhhCCCEEEEEEEEEeeeccCCeEEEEEecCCeeEEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCCCC
Confidence 79999998899999999999999999999999999999999999998653 3678889999999999999999987542
Q ss_pred CCCCCcCCccEEEEEeeEEEeecCC-CCCCccc
Q psy3762 82 TNNTNLISGNIEILCRELKILNSSI-TLPFQID 113 (595)
Q Consensus 82 ~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~ 113 (595)
.+++||++++++++|+|. ++|++..
T Consensus 81 -------~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 81 -------PNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred -------CCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 468999999999999996 6776654
No 42
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.82 E-value=1.8e-19 Score=158.10 Aligned_cols=102 Identities=35% Similarity=0.510 Sum_probs=88.1
Q ss_pred EEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCC-cHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEE
Q psy3762 17 VISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPN-DIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEIL 95 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~-~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~ 95 (595)
+|+|+|||+++|.+|+++|++|||++|.+|||++.+ ..++++.+++|+.||+|.|+|++..++. ..+++||+
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~~~~~-------~~~~~Ei~ 73 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKADPR-------APGGAEVH 73 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCeeEEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEEECCC-------CCCCEEEE
Confidence 489999999999999999999999999999999865 2357777889999999999999998764 23579999
Q ss_pred EeeEEEeecCCCCCCcccccCcchhhhccccch
Q psy3762 96 CRELKILNSSITLPFQIDEKNILEVTNLKYRVL 128 (595)
Q Consensus 96 v~~i~vls~~~~lP~~~~~~~~~~~~r~~~r~l 128 (595)
+++++++|+|. |||+.. ..++++++++|||
T Consensus 74 ~~~i~vl~~a~--~~pi~~-~~~~~~~~~~rhL 103 (103)
T cd04319 74 GEKLEIIQNVE--FFPITE-DASDEFLLDVRHL 103 (103)
T ss_pred EEEEEEEecCC--CCccCC-CCCHHHHhhccCC
Confidence 99999999996 555555 3489999999997
No 43
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.79 E-value=4.9e-19 Score=183.69 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeec--------CC--CCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEE
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSK--------ST--PEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQ 212 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~--------~~--~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~ 212 (595)
+.+.+.||++|...||.|+++|.|++ +. .+.||++..+++......+.-++||.+..-+.-....-|+|+
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~L~~~~~Pirif~ 190 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRTMEKQKPPIRIIA 190 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHHHHhcCCCeEEEE
Confidence 68899999999999999999999875 22 235777777776655667788899987665543233459999
Q ss_pred EecceecCCCCCCCCccccccccccccC--CHHHHHHHHHHHHHHHH
Q psy3762 213 ITKCFRDEDLRSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 213 i~~~FR~E~~~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~~l~ 257 (595)
+|+|||++..+++|.|+|+|+|.-++.. ++.++...++.++++++
T Consensus 191 ~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 191 PGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred eeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999977664 46888888887777775
No 44
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.2e-18 Score=179.85 Aligned_cols=115 Identities=19% Similarity=0.287 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeec--------C--CCCCCccccccccCCCCC---eeeccCChHHHHHHHHhhC-CC
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSK--------S--TPEGARDYLVPSRINPGE---FFALPQSPQLFKQLLMVAN-FD 208 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~--------~--~~~ga~~f~~~~~~~~~~---~~~L~~Spql~~q~ll~~g-~~ 208 (595)
..++..++++|.+.||.+++.|.+.+ + ..+.|+++.++++..... .+..|+||-....+.--.. .-
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P~ 193 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIPI 193 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCCc
Confidence 67889999999999999999997766 1 234688888887765443 6778899988777753233 67
Q ss_pred ceEEEecceecCCCCCCCCccccccccccccCC--HHHHHHHHHHHHHHHH
Q psy3762 209 RYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN--EEEIRNLFEEMIRVIF 257 (595)
Q Consensus 209 rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~--~~dl~~~~E~ll~~l~ 257 (595)
|+|++|+|||+|..|++|.|||+|+|.-....+ +.+++.+++++++.++
T Consensus 194 k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 194 KIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFF 244 (335)
T ss_pred eEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999997665543 5788877777766664
No 45
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.75 E-value=1.4e-17 Score=145.87 Aligned_cols=95 Identities=20% Similarity=0.323 Sum_probs=80.8
Q ss_pred EEEEEEEEEeEeccC-CeEEEEEEeCCeeEEEEECCCc----HHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCcc
Q psy3762 17 VISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPND----IKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGN 91 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g-~l~Fi~LrD~~g~lQvv~~~~~----~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~ 91 (595)
+|+|+|||+++|.+| +++|++|||++|.+|||++.+. .+++++++.|+.||+|.|+|++..++.. .+. +.+|+
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~-~~~-~~~~~ 78 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEP-IKS-CTQQD 78 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCc-ccC-CCcCc
Confidence 489999999999999 9999999999999999998652 3577888999999999999999987542 222 25589
Q ss_pred EEEEEeeEEEeecCC-CCCCccc
Q psy3762 92 IEILCRELKILNSSI-TLPFQID 113 (595)
Q Consensus 92 iEl~v~~i~vls~~~-~lP~~~~ 113 (595)
+||+++++++||+|. ++|+...
T Consensus 79 ~El~~~~i~il~~~~~~~P~~~~ 101 (102)
T cd04320 79 VELHIEKIYVVSEAAEPLPFQLE 101 (102)
T ss_pred EEEEEEEEEEEecCCCCCCCCCC
Confidence 999999999999996 5787654
No 46
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.72 E-value=1.3e-17 Score=168.05 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeec--------CCC--CCCccccccccC-------CCCCeeeccCChHHHHHH-HHh
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSK--------STP--EGARDYLVPSRI-------NPGEFFALPQSPQLFKQL-LMV 204 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~--------~~~--~ga~~f~~~~~~-------~~~~~~~L~~Spql~~q~-ll~ 204 (595)
+.+.+.+|++|...||.|+.+|.+.+ +.+ ..|++...+++. .....+..++||.+..-+ .-.
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~ 99 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHR 99 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhc
Confidence 67889999999999999999999965 222 346665554443 233345566778666544 112
Q ss_pred hCCCceEEEecceecCCCCCCCCccccccccccccCC--HHHHHHHHHHHHHHHH
Q psy3762 205 ANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN--EEEIRNLFEEMIRVIF 257 (595)
Q Consensus 205 ~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~--~~dl~~~~E~ll~~l~ 257 (595)
....|+|+||+|||+|..+++|.|||+|+|.-.++.+ +.+++..++.++++++
T Consensus 100 ~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 100 PPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp HSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 3457999999999999999999999999999887764 6888888888777775
No 47
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.67 E-value=7.5e-16 Score=130.10 Aligned_cols=84 Identities=29% Similarity=0.501 Sum_probs=72.6
Q ss_pred EEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEE
Q psy3762 17 VISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILC 96 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v 96 (595)
.|+|+|||+++|.+|+++|++|||+++.+|++++.+....++++++|+.||+|.|+|++..++.+. +..+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~----~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDPRAK----QAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeEEEEEEcCCcchhHHHHhcCCCcCEEEEEEEEEECCccc----CCCCCEEEEE
Confidence 489999999999999999999999999999999865432267788999999999999999987542 3467899999
Q ss_pred eeEEEeec
Q psy3762 97 RELKILNS 104 (595)
Q Consensus 97 ~~i~vls~ 104 (595)
+++++||.
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999984
No 48
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.66 E-value=7.9e-16 Score=166.02 Aligned_cols=112 Identities=18% Similarity=0.259 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhhCCCeec-cCceeec----------CCCCCCccccccccCC---------------------------
Q psy3762 143 YKVTMEVRKFLDSKKFIEI-ETPILSK----------STPEGARDYLVPSRIN--------------------------- 184 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV-~TPiL~~----------~~~~ga~~f~~~~~~~--------------------------- 184 (595)
..+.+.||++|.+.||.|+ +.|.+.+ ...+.||+..++|+..
T Consensus 224 ~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~~gS 303 (492)
T PLN02853 224 LKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGGYGS 303 (492)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCCCCc
Confidence 5788899999999999999 5676655 2335678766666543
Q ss_pred ------------CCCeeeccCChHHHHHHHH-h-h--CCCceEEEecceecCCCCCCCCccccccccccccC--CHHHHH
Q psy3762 185 ------------PGEFFALPQSPQLFKQLLM-V-A--NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM--NEEEIR 246 (595)
Q Consensus 185 ------------~~~~~~L~~Spql~~q~ll-~-~--g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~--~~~dl~ 246 (595)
....+..|+|+-....+.- . . ...|+|+||+|||+|..|++|.|||+|+|.-++.. ++.+++
T Consensus 304 ~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~~~L~ 383 (492)
T PLN02853 304 IGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGDLI 383 (492)
T ss_pred cccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCCCHHHHH
Confidence 1123466777765544431 2 1 24599999999999999999999999999887643 356666
Q ss_pred HHHHHHHH
Q psy3762 247 NLFEEMIR 254 (595)
Q Consensus 247 ~~~E~ll~ 254 (595)
.+++.+++
T Consensus 384 g~l~~f~~ 391 (492)
T PLN02853 384 GVLEDFFS 391 (492)
T ss_pred HHHHHHHH
Confidence 55555443
No 49
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.65 E-value=1.4e-15 Score=128.64 Aligned_cols=84 Identities=40% Similarity=0.835 Sum_probs=73.3
Q ss_pred EEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH-HHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEE
Q psy3762 17 VISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI-KIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEIL 95 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~-~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~ 95 (595)
+|+|+|||+++|.+|+++|++|||+++.+|++++.+.. ++++.++.|+.||+|.|+|++..++.+. ..++++||.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~----~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGN----LATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCeeEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEEECCCCC----CCCCCEEEE
Confidence 38999999999999999999999999999999986643 3678889999999999999999876432 246889999
Q ss_pred EeeEEEeec
Q psy3762 96 CRELKILNS 104 (595)
Q Consensus 96 v~~i~vls~ 104 (595)
+++++++|+
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
No 50
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.64 E-value=2.4e-15 Score=127.61 Aligned_cols=84 Identities=27% Similarity=0.488 Sum_probs=72.1
Q ss_pred EEEEEEEEEeEec-cCCeEEEEEEeCCe-eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEE
Q psy3762 17 VISLCGWVHRKRN-HGGIIFIDLRDYTG-LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEI 94 (595)
Q Consensus 17 ~V~i~GwV~~~R~-~g~l~Fi~LrD~~g-~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl 94 (595)
+|+|+|||+++|. +|+++|++|||++| .+|||++++. +.++.+++|+.||+|.|+|++..++.... ..+|++||
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~~-~~~~~~~~l~~~s~V~V~G~v~~~~~~~~---~~~~~~Ei 76 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAKK-DAFSLLKSITAESPVQVRGKLQLKEAKSS---EKNDEWEL 76 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCCH-HHHHHHhcCCCCcEEEEEEEEEeCCCcCC---CCCCCEEE
Confidence 4899999999999 68999999999999 6999998653 46777888999999999999999865321 24589999
Q ss_pred EEeeEEEeec
Q psy3762 95 LCRELKILNS 104 (595)
Q Consensus 95 ~v~~i~vls~ 104 (595)
.++++++||+
T Consensus 77 ~~~~i~il~~ 86 (86)
T cd04321 77 VVDDIQTLNA 86 (86)
T ss_pred EEEEEEEecC
Confidence 9999999984
No 51
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.64 E-value=1.9e-15 Score=161.09 Aligned_cols=129 Identities=21% Similarity=0.334 Sum_probs=90.0
Q ss_pred hhhhccccchhhccHhhHHHHHH-----HHHHHHHHHHHhhhCCCeeccCceeecCCC---CC---CccccccccCCCCC
Q psy3762 119 EVTNLKYRVLYLRYKHMQKNLRL-----RYKVTMEVRKFLDSKKFIEIETPILSKSTP---EG---ARDYLVPSRINPGE 187 (595)
Q Consensus 119 ~~~r~~~r~l~lr~~~~~~~l~~-----rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~g---a~~f~~~~~~~~~~ 187 (595)
.++||.+| |++..++++.+ .+.+.+++|++|..+||.||.||.|+.... .+ ...+..+... .+.
T Consensus 182 ~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~-ide 256 (417)
T PRK09537 182 LESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR-VDK 256 (417)
T ss_pred HHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhhee-eCC
Confidence 46677666 89999999999 999999999999999999999999975210 01 1111111110 123
Q ss_pred eeecc--CChHHHHHHHH----hhCCCceEEEecceecCCCCCCCCccccccccccccCC--HHHHHHHHHHH
Q psy3762 188 FFALP--QSPQLFKQLLM----VANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN--EEEIRNLFEEM 252 (595)
Q Consensus 188 ~~~L~--~Spql~~q~ll----~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~--~~dl~~~~E~l 252 (595)
..+|+ ..|+++..... ....-|+|+||+|||+|..+.+|.+||+|++++..+.+ ++|++.+++++
T Consensus 257 el~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeL 329 (417)
T PRK09537 257 NFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDF 329 (417)
T ss_pred ceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHH
Confidence 45677 57777665421 12245899999999999988888889999999987653 34544444443
No 52
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.63 E-value=2.2e-15 Score=163.38 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhhCCCeeccCc-eeec----------CCCCCCccccccccCCC--------------------------
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETP-ILSK----------STPEGARDYLVPSRINP-------------------------- 185 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TP-iL~~----------~~~~ga~~f~~~~~~~~-------------------------- 185 (595)
..+++.+|++|.+.||.|+++| .+.+ ...+.||+..++|+...
T Consensus 232 ~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~He~G~~ 311 (494)
T PTZ00326 232 LKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEVGGY 311 (494)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHhccCCc
Confidence 6788899999999999999887 4443 23356777666554321
Q ss_pred ---------------CCeeeccCChHHHHHHHHh-------h--CCCceEEEecceecCCCCCCCCccccccccccccCC
Q psy3762 186 ---------------GEFFALPQSPQLFKQLLMV-------A--NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN 241 (595)
Q Consensus 186 ---------------~~~~~L~~Spql~~q~ll~-------~--g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~ 241 (595)
...+.-++|+-...-+.-. . ...|+|+||+|||+|..|++|.+||+|+|..+...+
T Consensus 312 gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~~ 391 (494)
T PTZ00326 312 GSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGFVIDRN 391 (494)
T ss_pred CCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEEEEeCC
Confidence 1123445676655544321 1 256999999999999999999999999999987665
No 53
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.61 E-value=6.5e-15 Score=123.75 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=69.5
Q ss_pred EEEEEEEEEeEeccCCeEEEEEEeCCee--EEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEE
Q psy3762 17 VISLCGWVHRKRNHGGIIFIDLRDYTGL--VQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEI 94 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g~l~Fi~LrD~~g~--lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl 94 (595)
.|+|+|||+++|.+|+++|++|||+++. +|||++++.. .++.+++|+.||+|.|+|.+..++. ..|++||
T Consensus 1 ~v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~-~~~~~~~l~~gs~V~v~G~v~~~~~-------~~~~~El 72 (82)
T cd04318 1 EVTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELT-NFKEILKLSTGSSIRVEGVLVKSPG-------AKQPFEL 72 (82)
T ss_pred CEEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCccc-CHHHHhcCCCceEEEEEEEEEeCCC-------CCCCEEE
Confidence 3899999999999999999999999995 9999987643 3677889999999999999998764 2578999
Q ss_pred EEeeEEEee
Q psy3762 95 LCRELKILN 103 (595)
Q Consensus 95 ~v~~i~vls 103 (595)
+++++++++
T Consensus 73 ~~~~i~il~ 81 (82)
T cd04318 73 QAEKIEVLG 81 (82)
T ss_pred EEEEEEEec
Confidence 999999986
No 54
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.53 E-value=1e-13 Score=147.44 Aligned_cols=95 Identities=17% Similarity=0.309 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhhC---CCeecc--Cceeec---------CCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCC
Q psy3762 143 YKVTMEVRKFLDSK---KFIEIE--TPILSK---------STPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFD 208 (595)
Q Consensus 143 s~i~~~iR~ff~~~---gF~EV~--TPiL~~---------~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~ 208 (595)
+.+.+.|+++|.+. ||.+++ .|+.+. .....|++..++++...+..+..|+|+-...-+. .+..
T Consensus 71 ~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l~--~~~~ 148 (402)
T PLN02788 71 GILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELLR--AGHT 148 (402)
T ss_pred HHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHHH--hCCC
Confidence 57788899999987 999999 565443 1234577777777776667778889997765553 4667
Q ss_pred ceEEEecceecCCCCCCCCcccccccccccc
Q psy3762 209 RYYQITKCFRDEDLRSDRQPEFTQIDCETSF 239 (595)
Q Consensus 209 rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~ 239 (595)
+++.+|+|||+|..|++|.|+|+|+|.-+.+
T Consensus 149 ~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 149 HFLVTGDVYRRDSIDATHYPVFHQMEGVRVF 179 (402)
T ss_pred cEEEEeeEeecCCCCcccCccceeEEEEEEe
Confidence 9999999999999999999999999998765
No 55
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.52 E-value=1.1e-13 Score=147.25 Aligned_cols=106 Identities=21% Similarity=0.336 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhhhCCCeeccCceeecCC------CCCCccccccccCCCCCeeecc--CChHHHHHHHH----hhCCC
Q psy3762 141 LRYKVTMEVRKFLDSKKFIEIETPILSKST------PEGARDYLVPSRINPGEFFALP--QSPQLFKQLLM----VANFD 208 (595)
Q Consensus 141 ~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~~ga~~f~~~~~~~~~~~~~L~--~Spql~~q~ll----~~g~~ 208 (595)
-.+.+.+.+|++|...||.||.||+|+... ..+..+...+... .++..+|+ ..|+++..... ....-
T Consensus 241 ~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk-~ee~lvLRPdLTPsLaR~La~N~~~l~~Pq 319 (453)
T TIGR02367 241 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR-VDKNFCLRPMLAPNLYNYLRKLDRALPDPI 319 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE-ecCceEecccCHHHHHHHHHHhhhhccCCe
Confidence 458999999999999999999999997311 0011111101100 12345777 77787754421 12245
Q ss_pred ceEEEecceecCCCCCCCCccccccccccccCC--HHHHHH
Q psy3762 209 RYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN--EEEIRN 247 (595)
Q Consensus 209 rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~--~~dl~~ 247 (595)
|+|+||+|||+|..+.+|..||+|++++.++.+ +.|+..
T Consensus 320 KIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlea 360 (453)
T TIGR02367 320 KIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEA 360 (453)
T ss_pred eEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHH
Confidence 999999999999998888889999999987654 354443
No 56
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=99.44 E-value=1.2e-12 Score=140.23 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhhC--------CCeeccC--ceeec-------CCC--CCCccccccccCCCCCeeeccCChHHHHHHHH
Q psy3762 143 YKVTMEVRKFLDSK--------KFIEIET--PILSK-------STP--EGARDYLVPSRINPGEFFALPQSPQLFKQLLM 203 (595)
Q Consensus 143 s~i~~~iR~ff~~~--------gF~EV~T--PiL~~-------~~~--~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll 203 (595)
..+.+.|.++|.+. ||.-++. |+.+. +.| ..||+...+++...+..+..|+|+-+..-+-
T Consensus 45 ~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~~~~lLRTHTSa~q~~~~~- 123 (460)
T TIGR00469 45 GIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYINEQHLLRAHTSAHELECFQ- 123 (460)
T ss_pred HHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEecCCceeCCCCcHHHHHHHH-
Confidence 56667777888776 8877777 84443 122 3467777777776667778889996654442
Q ss_pred hhCC-----Cc--eEEEecceecCCCCCCCCccccccccccccC
Q psy3762 204 VANF-----DR--YYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240 (595)
Q Consensus 204 ~~g~-----~r--vf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~ 240 (595)
.+. .+ +...|.|||.++.|++|.|.|+|+|.-+.+.
T Consensus 124 -~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 124 -GGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRK 166 (460)
T ss_pred -hccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEec
Confidence 232 23 8999999999999999999999999765554
No 57
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.42 E-value=8e-13 Score=129.45 Aligned_cols=101 Identities=30% Similarity=0.326 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhhCCCeeccCceeecCC-CCCC---ccccccccCCCCCeeeccCChHHHHHHHHhh----CCCceEEE
Q psy3762 142 RYKVTMEVRKFLDSKKFIEIETPILSKST-PEGA---RDYLVPSRINPGEFFALPQSPQLFKQLLMVA----NFDRYYQI 213 (595)
Q Consensus 142 rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~~ga---~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~----g~~rvf~i 213 (595)
|+.+.+.+|++|.+.||.||.||.++... .... ...........++.++|++|+...+...++. ...|+|+|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfei 81 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEI 81 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEE
Confidence 67899999999999999999999998742 1111 0001111123456679999999999887664 45699999
Q ss_pred ecceecCCCCC--CCCccccccccccccCCH
Q psy3762 214 TKCFRDEDLRS--DRQPEFTQIDCETSFMNE 242 (595)
Q Consensus 214 ~~~FR~E~~~~--~r~~EFt~lE~e~~~~~~ 242 (595)
|+|||.|.... .|..||+|+++++.+.+.
T Consensus 82 g~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~ 112 (211)
T cd00768 82 GPAFRNEGGRRGLRRVREFTQLEGEVFGEDG 112 (211)
T ss_pred cceeecCCCccccccceeEEEcCEEEEcCCc
Confidence 99999987644 455699999999987643
No 58
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.38 E-value=3.1e-11 Score=122.79 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=67.6
Q ss_pred cceeeEEe-c-----CEEEeecccccCCHHHHHHHHHHcCC-ChhhhhhcHHHHHHHhhCC-CCCccceeccHHHHHHHH
Q psy3762 478 SKAYDLII-N-----GWEIGGGSIRIHDAEIQKKIFKVLNI-DNKIVKTQFGFLLNSLKYG-APPHGGIAFGLDRLITIM 549 (595)
Q Consensus 478 ~~~fDl~~-~-----G~Ei~gGs~R~~d~~~~~~~~~~~g~-~~~~~~~~~~~yL~al~~G-~PPh~G~glGlDRLvm~l 549 (595)
+..=|+++ + ..||.++++|. |++.+.++++..|. +.. .+.||++ +..| +|+|+|+|||.|||+|+|
T Consensus 250 gLNGDilvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~----~l~~h~~-ll~g~LP~TiGGGIGqsRL~M~L 323 (348)
T PTZ00213 250 GLNGDILVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRL----KCMWHQM-LLNGELPQTIGGGIGQSRLCMFM 323 (348)
T ss_pred CccceEEEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccc----cCHHHHH-HHcCCCCCcccccccHHHHHHHH
Confidence 34456544 2 45999999999 99999999999994 444 5778888 7778 999999999999999999
Q ss_pred cCCCCcccccc--CCCCC
Q psy3762 550 TGSKSIRDVIA--FPKTQ 565 (595)
Q Consensus 550 ~g~~~IRdvi~--FPr~~ 565 (595)
+|.++|.+|.+ .|...
T Consensus 324 L~k~HIgEVQ~svW~~~~ 341 (348)
T PTZ00213 324 LRKKHIGEVQCSVWPHET 341 (348)
T ss_pred hCcchhcceeeeeCCHHH
Confidence 99999999876 55443
No 59
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.36 E-value=2.8e-11 Score=122.82 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=61.1
Q ss_pred CEEEeecccccCCHHHHHHHHHHcCC-ChhhhhhcHHHHHHHhhCC-CCCccceeccHHHHHHHHcCCCCcccccc
Q psy3762 487 GWEIGGGSIRIHDAEIQKKIFKVLNI-DNKIVKTQFGFLLNSLKYG-APPHGGIAFGLDRLITIMTGSKSIRDVIA 560 (595)
Q Consensus 487 G~Ei~gGs~R~~d~~~~~~~~~~~g~-~~~~~~~~~~~yL~al~~G-~PPh~G~glGlDRLvm~l~g~~~IRdvi~ 560 (595)
..||.++++|.+ ++.+.++++..|. +.. .+.||+++ ..| +|||+|+|||.|||+|+|+|.++|.+|.+
T Consensus 239 a~ELSSmGiRVd-~e~L~~Qlk~~g~~dr~----~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 239 AFELSSMGIRVD-EEALKRQLKLTGDEDRL----ELEWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred eeeecCcceEec-HHHHHHHHHHcCCCccc----cCHHHHHH-HhCCCCCcccccccHHHHHHHHhccchhccccc
Confidence 459999999999 9999999999994 443 57788888 778 99999999999999999999999999876
No 60
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.35 E-value=2.9e-11 Score=121.65 Aligned_cols=68 Identities=26% Similarity=0.360 Sum_probs=60.4
Q ss_pred CEEEeecccccCCHHHHHHHHHHcCC-ChhhhhhcHHHHHHHhhCC-CCCccceeccHHHHHHHHcCCCCcccccc
Q psy3762 487 GWEIGGGSIRIHDAEIQKKIFKVLNI-DNKIVKTQFGFLLNSLKYG-APPHGGIAFGLDRLITIMTGSKSIRDVIA 560 (595)
Q Consensus 487 G~Ei~gGs~R~~d~~~~~~~~~~~g~-~~~~~~~~~~~yL~al~~G-~PPh~G~glGlDRLvm~l~g~~~IRdvi~ 560 (595)
..||.++++|.+. +.+.++++..|. +.. .+.| ++++..| +|||+|+|||.|||+|+|+|..+|.+|.+
T Consensus 229 a~ELSSmGiRVde-e~L~~Ql~~~g~~dr~----~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqa 298 (309)
T cd00645 229 AFELSSMGIRVDE-ESLQKQLKLAGDEDRL----ELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQA 298 (309)
T ss_pred eeeecCcceEecH-HHHHHHHHHcCCCccc----cCHH-HHHHHcCCCCccccccccHHHHHHHHhccchhcceee
Confidence 4599999999999 999999999884 444 3444 9999999 99999999999999999999999999876
No 61
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.35 E-value=8.1e-12 Score=129.68 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCC--------CC--CCccccccccCCCCCeeeccCChHHHHHHHHhh-CCCceE
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKST--------PE--GARDYLVPSRINPGEFFALPQSPQLFKQLLMVA-NFDRYY 211 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~--------~~--ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~-g~~rvf 211 (595)
..+.+.+|++|...||.|+.||.+.+.. +. .+++...++.......++-+.+|-+..-+.--. ..-|+|
T Consensus 75 ~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~vLRtsl~p~ll~~l~~N~~~pirlF 154 (294)
T TIGR00468 75 TRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLLLRTHTTAVQLRTMEENEKPPIRIF 154 (294)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCCcceecccHHHHHHHHHhcCCCCceEE
Confidence 5677789999999999999999997641 11 122211111111223344456665543332111 235999
Q ss_pred EEecceecCCCCCCCCccccccccccccC--CHHHHHHHHHHHHH
Q psy3762 212 QITKCFRDEDLRSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIR 254 (595)
Q Consensus 212 ~i~~~FR~E~~~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~ 254 (595)
+||+|||++..+++|.|||+|++.-+... ++.|+...+|.++.
T Consensus 155 EiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~ 199 (294)
T TIGR00468 155 SPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLK 199 (294)
T ss_pred EecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999887888888999999986542 45666666555554
No 62
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.28 E-value=6e-11 Score=131.62 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecC----------CCCCCccccccccCCC----------------------
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKS----------TPEGARDYLVPSRINP---------------------- 185 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~----------~~~ga~~f~~~~~~~~---------------------- 185 (595)
-...+..+.+.+|+.|...||.|++||.+.+. ..+.||+...++....
T Consensus 231 ~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~ 310 (489)
T PRK04172 231 KKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGG 310 (489)
T ss_pred CCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccC
Confidence 34456899999999999999999999999852 1234544333221110
Q ss_pred ---------------CCeeeccCChHHHHHHHHh---hCCCceEEEecceecCCCCCCCCccccccccccccCC--HHHH
Q psy3762 186 ---------------GEFFALPQSPQLFKQLLMV---ANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN--EEEI 245 (595)
Q Consensus 186 ---------------~~~~~L~~Spql~~q~ll~---~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~--~~dl 245 (595)
+....|++...-..-++++ ...-|+|+||+|||+|..+.+|.+||+|+++.+.+.+ +.++
T Consensus 311 ~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f~el 390 (489)
T PRK04172 311 DTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSFRDL 390 (489)
T ss_pred CCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCHHHH
Confidence 0112344333333333333 2235999999999999988888889999999988752 3444
Q ss_pred HHHHHHHH
Q psy3762 246 RNLFEEMI 253 (595)
Q Consensus 246 ~~~~E~ll 253 (595)
+.++++++
T Consensus 391 kg~l~~ll 398 (489)
T PRK04172 391 LGILKEFY 398 (489)
T ss_pred HHHHHHHH
Confidence 44444433
No 63
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=99.26 E-value=3.3e-11 Score=134.78 Aligned_cols=135 Identities=19% Similarity=0.275 Sum_probs=117.1
Q ss_pred ccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCcc-------chhhhHHHHHH
Q psy3762 270 PVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSI-------SRNEINYYTQF 342 (595)
Q Consensus 270 ~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~~~~~~~ 342 (595)
..+||.|||.+||+|||| +++|++++|.++.|.+|.+.++ +++.+.+|++|.+..+ +|+.+++|.++
T Consensus 262 ~lltY~EAM~rYGSDKPD-----eivDVTd~f~~t~fkif~~~ik-~gg~VkaI~vp~~~~~l~~e~~~srr~~d~l~e~ 335 (630)
T PRK04028 262 NLLKIRDELKERGASVED-----EIVDVTELFKDTKSKIIKKALK-KGGKVLAIKLPGFKGLLGREIQPGRRLGTELADY 335 (630)
T ss_pred HHHHHHHHHHHcCCCCCc-----cceehHHHhccCCchhhhhhhc-CCCeEEEEEcCCcccccccccccCHHHHHHHHHH
Confidence 358999999999999999 8999999999999999998774 4689999999987655 78899999999
Q ss_pred HHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCccc
Q psy3762 343 VKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGK 422 (595)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~ 422 (595)
++.+|.+|+.|+. + + +...++.+..+.+.+.++++.||++||.+++...++++||+||..+++
T Consensus 336 aK~~GakGL~~~~--e-------l---~~~~is~e~l~~L~e~l~ak~GDll~~~a~k~~~v~~~LG~LR~~la~----- 398 (630)
T PRK04028 336 AKAWGVGGIFHTD--E-------L---PAYGITEEEVEALREALGAGENDAFILVADEEEKAEKALEAVIERAKE----- 398 (630)
T ss_pred HHHcCCCceEEec--c-------c---ccCCCCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHH-----
Confidence 9999999998866 2 1 012246788899999999999999999999999999999999999998
Q ss_pred ccccc
Q psy3762 423 RNNIL 427 (595)
Q Consensus 423 ~~~l~ 427 (595)
.++.+
T Consensus 399 ~l~~v 403 (630)
T PRK04028 399 ALEGV 403 (630)
T ss_pred HhCCC
Confidence 56555
No 64
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.22 E-value=1e-09 Score=111.26 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=62.8
Q ss_pred cceeeEEe-c-----CEEEeecccccCCHHHHHHHHHHcC-CChhhhhhcHHHHHHHhhCC-CCCccceeccHHHHHHHH
Q psy3762 478 SKAYDLII-N-----GWEIGGGSIRIHDAEIQKKIFKVLN-IDNKIVKTQFGFLLNSLKYG-APPHGGIAFGLDRLITIM 549 (595)
Q Consensus 478 ~~~fDl~~-~-----G~Ei~gGs~R~~d~~~~~~~~~~~g-~~~~~~~~~~~~yL~al~~G-~PPh~G~glGlDRLvm~l 549 (595)
+..=|+++ + ..||.+=++|. |.+.+.++++..| .+.. .+.||+++ ..| +|+|+|+|||.|||+|+|
T Consensus 231 gLNGDilvw~~vl~~a~ElSSMGIRV-d~~~L~~Qlk~~g~~dr~----~l~~h~el-l~g~LP~TiGGGIGqsRL~MfL 304 (330)
T TIGR00669 231 GLNGDILVWNPVLGDAFELSSMGIRV-DEDALRHQLALTGDEDRL----ELEWHQDL-LNGELPQTIGGGIGQSRLAMLL 304 (330)
T ss_pred CcCceEEEEchhcCceeeeecceeEE-CHHHHHHHHHHcCCCccc----cCHHHHHH-HcCCCCccccccccHHHHHHHH
Confidence 34556544 2 45999999997 5777888888888 4444 57788888 778 999999999999999999
Q ss_pred cCCCCcccccc
Q psy3762 550 TGSKSIRDVIA 560 (595)
Q Consensus 550 ~g~~~IRdvi~ 560 (595)
||..+|.+|.+
T Consensus 305 L~k~HIgEVQ~ 315 (330)
T TIGR00669 305 LQLKHIGEVQA 315 (330)
T ss_pred hccccccceee
Confidence 99999999876
No 65
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.06 E-value=1.2e-08 Score=104.34 Aligned_cols=101 Identities=22% Similarity=0.256 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCCC---C-C---Ccc-ccccccCCCCCeeeccCChHHHHHHHHhh-----
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP---E-G---ARD-YLVPSRINPGEFFALPQSPQLFKQLLMVA----- 205 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~-g---a~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~----- 205 (595)
.++|..+.+.+++.|.++||.||.||.+..... . + ... |. +.+..|+.+.|+.......-++.+.
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~--~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~ 79 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYR--FKDKGGRDLALRPDLTAPVARAVAENLLSL 79 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEE--EECCCCCEEEeCCCCcHHHHHHHHhcCccC
Confidence 467899999999999999999999999987421 1 1 111 21 1223467788886555555554342
Q ss_pred -CCCceEEEecceecCCCCCCCCccccccccccccCC
Q psy3762 206 -NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN 241 (595)
Q Consensus 206 -g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~ 241 (595)
..-|+|++|+|||.|.....|..||+|+++|+.+.+
T Consensus 80 ~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CCCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCC
Confidence 345899999999999988777669999999987775
No 66
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.99 E-value=8.7e-09 Score=84.14 Aligned_cols=74 Identities=27% Similarity=0.472 Sum_probs=63.4
Q ss_pred EEEEEEEEeE-eccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEE
Q psy3762 18 ISLCGWVHRK-RNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILC 96 (595)
Q Consensus 18 V~i~GwV~~~-R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v 96 (595)
|+|+|||.++ |..++++|+.|.|++|.+||++-.+ ...+....|+.|+.|.|+|++...+ .+++||.+
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~--~~~~~~~~l~~g~~v~v~G~v~~~~---------~~~~~l~~ 69 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFNE--EYERFREKLKEGDIVRVRGKVKRYN---------GGELELIV 69 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETH--HHHHHHHTS-TTSEEEEEEEEEEET---------TSSEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEccH--HhhHHhhcCCCCeEEEEEEEEEEEC---------CccEEEEE
Confidence 7899999999 6667999999999999999999873 3566778899999999999999862 23599999
Q ss_pred eeEEEe
Q psy3762 97 RELKIL 102 (595)
Q Consensus 97 ~~i~vl 102 (595)
+++++|
T Consensus 70 ~~i~~l 75 (75)
T PF01336_consen 70 PKIEIL 75 (75)
T ss_dssp EEEEEE
T ss_pred CEEEEC
Confidence 999876
No 67
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=98.93 E-value=5e-10 Score=96.78 Aligned_cols=87 Identities=36% Similarity=0.698 Sum_probs=77.8
Q ss_pred CCeeEEEecCCC-CccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEE
Q psy3762 317 NGRIIGLKIPGG-FSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIF 395 (595)
Q Consensus 317 ~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~ 395 (595)
+++|++|++|.+ ..++|+++|+|.++++.+|.+|+.|+++.+ ..+++++.+++++++.+++.+.+++++||++|
T Consensus 8 ~g~Vkai~vp~~~~~~srk~id~l~~~ak~~ga~gL~~ikv~~-----~~~~s~i~kfl~e~~~~~l~~~~~a~~GD~ll 82 (95)
T PF02938_consen 8 GGSVKAIVVPGGAAKLSRKQIDKLEEFAKKFGAKGLAWIKVEE-----GELKSPIAKFLSEEELKALIERLGAKPGDLLL 82 (95)
T ss_dssp TSEEEEEEETTG-TTTTHCCCCCCCCHHHHCCHCHCCCEEEST-----CEEECTTCCCCHHHHHHHHHHHTT--TTEEEE
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhCCCCceeeeEcC-----CcccCcccccCCHHHHHHHHHHhCCCCCCEEE
Confidence 789999999985 689999999999999999999999999977 35789999999999999999999999999999
Q ss_pred ecCCchhhHHHHH
Q psy3762 396 LGGDEKNIVNNFM 408 (595)
Q Consensus 396 ~~~~~~~~~~~~l 408 (595)
|.+++...++++|
T Consensus 83 ~~Ag~~~~v~~~L 95 (95)
T PF02938_consen 83 FVAGKKEIVNKAL 95 (95)
T ss_dssp EEEESHHHHHHHH
T ss_pred EECCCHHHHHhhC
Confidence 9999888777654
No 68
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.93 E-value=4.4e-09 Score=112.25 Aligned_cols=69 Identities=13% Similarity=0.215 Sum_probs=54.3
Q ss_pred eeeccCChHHHHHHHH-h---hCCCceEEEecceecCC-CCCCCCccccccccccccCC--HHHHHHHHHHHHHHH
Q psy3762 188 FFALPQSPQLFKQLLM-V---ANFDRYYQITKCFRDED-LRSDRQPEFTQIDCETSFMN--EEEIRNLFEEMIRVI 256 (595)
Q Consensus 188 ~~~L~~Spql~~q~ll-~---~g~~rvf~i~~~FR~E~-~~~~r~~EFt~lE~e~~~~~--~~dl~~~~E~ll~~l 256 (595)
.+.-++||.+..-+.. + ...-|+|++|+|||+|. .+++|.++|+|+|.-++..+ +.|++.+++.|++++
T Consensus 184 lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 184 TLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred ccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3566788866655531 2 24469999999999995 68999999999999887764 689999888887776
No 69
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.85 E-value=2.7e-07 Score=97.03 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC----CC-CccccccccCCCCCeeeccCChHHHHHHHHhh------
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP----EG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVA------ 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~------ 205 (595)
.-.+++..+.+.+++.|.++||.||+||++..... .| ..+-...+.+..|+.+.|+.-.....-+.++.
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~~~~~ 85 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARAVSTRLRDRP 85 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHHHHHhcccCC
Confidence 34677899999999999999999999999987321 11 11101112233577788885443334443332
Q ss_pred CCCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHHH
Q psy3762 206 NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRVI 256 (595)
Q Consensus 206 g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~l 256 (595)
...|+|++|+|||.|.....|--||+|+++|..+.+. .|++.++-+.++.+
T Consensus 86 ~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~l 140 (314)
T TIGR00443 86 LPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKAL 140 (314)
T ss_pred CCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 2359999999999999887776699999999877652 45555555554443
No 70
>PLN02972 Histidyl-tRNA synthetase
Probab=98.81 E-value=3e-07 Score=105.08 Aligned_cols=123 Identities=18% Similarity=0.249 Sum_probs=91.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC------CCCCccccccccCCCCCeeeccCChHHHHHHHHhhC
Q psy3762 133 KHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST------PEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVAN 206 (595)
Q Consensus 133 ~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g 206 (595)
..+-.-..+|..|...+++.|..+||.||+||++.... .+.... ...+.+..|+.+.|+.-.....-++++..
T Consensus 335 D~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~-mY~f~D~gGr~LaLRPDlTvPiAR~vA~n 413 (763)
T PLN02972 335 DFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKL-IYDLADQGGELCSLRYDLTVPFARYVAMN 413 (763)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhh-eEEEECCCCCEEEeCCCChHHHHHHHHhC
Confidence 33445678899999999999999999999999997532 111111 11222345777889877777777766643
Q ss_pred ---CCceEEEecceecCCCCCCCCccccccccccccC-C----HHHHHHHHHHHHHHH
Q psy3762 207 ---FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM-N----EEEIRNLFEEMIRVI 256 (595)
Q Consensus 207 ---~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~-~----~~dl~~~~E~ll~~l 256 (595)
.-|.|++|+|||.|.....|..||+|+++|..+. + ..|++.++-+.++.+
T Consensus 414 ~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~L 471 (763)
T PLN02972 414 GITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDEL 471 (763)
T ss_pred CCCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhC
Confidence 3588999999999998888878999999999885 2 267777777777654
No 71
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.80 E-value=7.4e-07 Score=96.47 Aligned_cols=120 Identities=9% Similarity=0.013 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----CCCC--ccccccccCC-CCCeeeccCChHHHHHHHHhh----
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----PEGA--RDYLVPSRIN-PGEFFALPQSPQLFKQLLMVA---- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~~ga--~~f~~~~~~~-~~~~~~L~~Spql~~q~ll~~---- 205 (595)
.-.+.+..|.+.+++.|..+||.||+||++.... ..|. ..-...+.+. .|+.+.|+.-.....-++.+.
T Consensus 19 ~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~ 98 (392)
T PRK12421 19 EEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNR 98 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCC
Confidence 3467789999999999999999999999998532 1121 1100111122 367777875554444444332
Q ss_pred -CCCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHHH
Q psy3762 206 -NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRVI 256 (595)
Q Consensus 206 -g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~l 256 (595)
..-|.|++|+|||.+.....|.-||+|+.+|..+.+. .|++.++-+.++.+
T Consensus 99 ~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 99 EGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred CCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 2359999999999999888888899999999988753 57787777776665
No 72
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.76 E-value=3e-07 Score=100.62 Aligned_cols=120 Identities=21% Similarity=0.244 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----CCCCc-cc---cccccCCCCCeeeccCChHHHHHHHHhhC--
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----PEGAR-DY---LVPSRINPGEFFALPQSPQLFKQLLMVAN-- 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~~ga~-~f---~~~~~~~~~~~~~L~~Spql~~q~ll~~g-- 206 (595)
.-..++..+.+.+++.|..+||.||.||+|.... ..|.. +. ...+.+..|..+.|+.-......++++..
T Consensus 16 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~iaR~va~~~~ 95 (423)
T PRK12420 16 EEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIPFAKVVAMNPN 95 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHHHHHHHHhCcC
Confidence 4467789999999999999999999999998732 11111 10 11122335677788866555555554431
Q ss_pred ---CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHHH
Q psy3762 207 ---FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRVI 256 (595)
Q Consensus 207 ---~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~l 256 (595)
.-|.|++|+|||.|.....|.-||+|+.+|..+.+. .|++.++-+.++.+
T Consensus 96 ~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l 152 (423)
T PRK12420 96 IRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL 152 (423)
T ss_pred CCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC
Confidence 238999999999998888876699999999977652 67777776666554
No 73
>PLN02530 histidine-tRNA ligase
Probab=98.75 E-value=5.8e-07 Score=100.03 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----CCCC---ccccccccCCCCCeeeccCChHHHHHHHHhhC--
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----PEGA---RDYLVPSRINPGEFFALPQSPQLFKQLLMVAN-- 206 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~~ga---~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g-- 206 (595)
-.-.++|..|.+.+++.|...||.||.||++.... ..|. ..+ ..+.+..|+.+.|+.-.....-++++..
T Consensus 81 p~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~-y~f~D~~g~~l~LRpD~T~~iaR~~~~~~~ 159 (487)
T PLN02530 81 PEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQL-YNFEDKGGRRVALRPELTPSLARLVLQKGK 159 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccce-EEEECCCCCEEecCCCCcHHHHHHHHhccc
Confidence 34477889999999999999999999999998731 1121 111 1122345677888876666666655532
Q ss_pred ----CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHHH
Q psy3762 207 ----FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRVI 256 (595)
Q Consensus 207 ----~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~l 256 (595)
.-|.|++|+|||.|.....|.-||+|+++|..+.+. .|++.++-+.++.+
T Consensus 160 ~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l 217 (487)
T PLN02530 160 SLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV 217 (487)
T ss_pred ccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc
Confidence 248999999999999988888899999999987753 56666666555444
No 74
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.41 E-value=1e-06 Score=95.56 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---C---CCC----ccccccccCCCCCeeeccCChHHHHHHHHhhC
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---P---EGA----RDYLVPSRINPGEFFALPQSPQLFKQLLMVAN 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~---~ga----~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g 206 (595)
.-.+++..+...+++.|.++||.||.||++.... . +.. ... ..+.+..|+.+.|+.-.....-+.++..
T Consensus 12 ~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~-~~~~d~~g~~l~LRpD~T~~iaR~~~~~ 90 (397)
T TIGR00442 12 EEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEM-YTFKDKGGRSLTLRPEGTAPVARAVIEN 90 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccce-EEEECCCCCEEeecCCCcHHHHHHHHhc
Confidence 3477889999999999999999999999997632 1 111 111 1112235677788755544444433321
Q ss_pred ------CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHH
Q psy3762 207 ------FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIR 254 (595)
Q Consensus 207 ------~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~ 254 (595)
.-|+|++|+|||.|..+..|..||+|+++|..+.+. .|++.++.+++.
T Consensus 91 ~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~ 148 (397)
T TIGR00442 91 KLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILK 148 (397)
T ss_pred ccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHH
Confidence 359999999999999888887899999999877663 244444444433
No 75
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.3e-06 Score=94.72 Aligned_cols=119 Identities=23% Similarity=0.242 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC------CCCCccc-c--ccccCCCCCeeeccCChHHHHHHHHhhC--
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST------PEGARDY-L--VPSRINPGEFFALPQSPQLFKQLLMVAN-- 206 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~~ga~~f-~--~~~~~~~~~~~~L~~Spql~~q~ll~~g-- 206 (595)
-...+..|...+|+.|.+.||.||.||++.... ++.+... . -.+.+..|..+.|+.-..-..-++++..
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~en~~ 96 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAENKL 96 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHhccc
Confidence 477889999999999999999999999987632 2221100 0 0122345677788866655566655432
Q ss_pred ----CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHHH
Q psy3762 207 ----FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRVI 256 (595)
Q Consensus 207 ----~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~l 256 (595)
.-|.|++|||||.|.....|..||+|+++|..+.+. .|++.++-++++.+
T Consensus 97 ~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l 154 (429)
T COG0124 97 DLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEAL 154 (429)
T ss_pred cccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc
Confidence 358999999999999999999999999999988863 78888888877765
No 76
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.37 E-value=1.1e-06 Score=87.92 Aligned_cols=102 Identities=19% Similarity=0.089 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCC-Cccccc-ccc--CCC----CCeeeccCChHHHHHHHHhh---
Q psy3762 140 RLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEG-ARDYLV-PSR--INP----GEFFALPQSPQLFKQLLMVA--- 205 (595)
Q Consensus 140 ~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~g-a~~f~~-~~~--~~~----~~~~~L~~Spql~~q~ll~~--- 205 (595)
+++..|.+.+++.|.+.||.||.||.|.... ..| ...+.. .+. ... +..++|+.......-++.+.
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence 5678999999999999999999999998743 222 111111 111 112 45677875555444433232
Q ss_pred ----CCCceEEEecceecCCCC---CCCCccccccccccccCC
Q psy3762 206 ----NFDRYYQITKCFRDEDLR---SDRQPEFTQIDCETSFMN 241 (595)
Q Consensus 206 ----g~~rvf~i~~~FR~E~~~---~~r~~EFt~lE~e~~~~~ 241 (595)
..-|+|++|+|||+|... -.|..||+|.|++..+.+
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred cchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 245899999999999876 457779999999986655
No 77
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.35 E-value=1.7e-06 Score=94.30 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC------CCCC----ccccccccCCCCCeeeccCChHHHHHHHHhh-
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST------PEGA----RDYLVPSRINPGEFFALPQSPQLFKQLLMVA- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~~ga----~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~- 205 (595)
.-.+.+..+.+.+++.|.++||.||.||++.... .+.. ..+. .+.+..|+.+.|+.-.....-+.++.
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~-~~~d~~g~~l~LRpd~T~~~ar~~~~~ 94 (412)
T PRK00037 16 EESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMY-TFQDKGGRSLTLRPEGTAPVVRAVIEH 94 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeE-EEEcCCCCEEEecCCCcHHHHHHHHhC
Confidence 3467788999999999999999999999997631 1111 1111 11223577788875544443343332
Q ss_pred --CCCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHH
Q psy3762 206 --NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRV 255 (595)
Q Consensus 206 --g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~ 255 (595)
..-|+|++|+|||+|..+..|.-||+|+++|..+.+. .|++.++.++++.
T Consensus 95 ~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~ 150 (412)
T PRK00037 95 KLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKA 150 (412)
T ss_pred CCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHH
Confidence 3569999999999999888887799999999877653 4555555444433
No 78
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.34 E-value=2.1e-06 Score=85.55 Aligned_cols=110 Identities=20% Similarity=0.277 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhCCCeeccCceeecCC-CCCCccccc---------ccc-CCCCCeeecc--CChHHHHHHHHhh--CCC
Q psy3762 144 KVTMEVRKFLDSKKFIEIETPILSKST-PEGARDYLV---------PSR-INPGEFFALP--QSPQLFKQLLMVA--NFD 208 (595)
Q Consensus 144 ~i~~~iR~ff~~~gF~EV~TPiL~~~~-~~ga~~f~~---------~~~-~~~~~~~~L~--~Spql~~q~ll~~--g~~ 208 (595)
.+.+.+|++|...||.||.|+.+++.. .-..-.+.. +.. .++- .-+|+ ..|.+... ++. ..-
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL~~--l~~N~~~~ 81 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQARA--LAKLKPPI 81 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHHHH--HHhcCCCe
Confidence 567789999999999999999997652 111000000 000 1111 23455 45555433 344 456
Q ss_pred ceEEEecceecCCCCCCCCccccccccccccC--CHHHHHHHHHHHHHHH
Q psy3762 209 RYYQITKCFRDEDLRSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIRVI 256 (595)
Q Consensus 209 rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~~l 256 (595)
|+||||+|||+++.+..|.|||+|+++.+++. ++.|++..+|.++..+
T Consensus 82 ~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 82 RIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred eEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 99999999999876666667999999999988 7899999999998755
No 79
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.29 E-value=7.7e-07 Score=85.27 Aligned_cols=116 Identities=25% Similarity=0.263 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhh-hCCCeeccCceeecCCC---CCC-cccccc---ccCCCCCeeeccCChHHHHHHHHhh-------
Q psy3762 141 LRYKVTMEVRKFLD-SKKFIEIETPILSKSTP---EGA-RDYLVP---SRINPGEFFALPQSPQLFKQLLMVA------- 205 (595)
Q Consensus 141 ~rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~---~ga-~~f~~~---~~~~~~~~~~L~~Spql~~q~ll~~------- 205 (595)
+++.|.+.+++.+. +.||.||.||+|.+... .|. ..|... .....++.++|+.+.+...-.++..
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 47889999999999 99999999999997421 121 011111 0111234578887766544443331
Q ss_pred -CCCceEEEecceecCC---CCCCCCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 206 -NFDRYYQITKCFRDED---LRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 206 -g~~rvf~i~~~FR~E~---~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
-.-++|++|+|||+|. .+-.|-.||+|.|++....+ ++..+..++++..+.
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~ 135 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYK 135 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHH
Confidence 2358999999999993 33557779999999987777 777777777666554
No 80
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=98.28 E-value=3e-06 Score=92.92 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----CCC-C-----ccccccccCCCCCeeeccCChHHHHHHHHhh-
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----PEG-A-----RDYLVPSRINPGEFFALPQSPQLFKQLLMVA- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~~g-a-----~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~- 205 (595)
.-...|..+.+.+++.|..+||.||.||++.... ..| . ..+. .+.+..|+.+.|+.-.....-+..+.
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my-~~~d~~g~~l~LRpd~T~~iaR~~~~~ 94 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMY-RFTDRSNRDITLRPEGTAGIVRAFIEN 94 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceE-EEEcCCCCEEEeCCCCcHHHHHHHHHc
Confidence 3466789999999999999999999999998732 112 1 1111 11123467788886666555554332
Q ss_pred ------CCCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHHH
Q psy3762 206 ------NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRVI 256 (595)
Q Consensus 206 ------g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~l 256 (595)
.+-|.|++|+|||.|.....|.-||+|+++|..+.+. .|++.++-+.++.+
T Consensus 95 ~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~l 155 (430)
T CHL00201 95 KMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNEL 155 (430)
T ss_pred cccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHc
Confidence 1249999999999999999999999999999987753 46666666655544
No 81
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.27 E-value=3.1e-06 Score=91.73 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----CCC--CccccccccCC-CCCeeeccCChHHHHHHHHhhC---
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----PEG--ARDYLVPSRIN-PGEFFALPQSPQLFKQLLMVAN--- 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~~g--a~~f~~~~~~~-~~~~~~L~~Spql~~q~ll~~g--- 206 (595)
.-.+.|..+...+++.|.++||.||.||++.... ..| ...-...+.+. .|+.+.|+.-.....-++++..
T Consensus 15 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~ 94 (391)
T PRK12292 15 EEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLAN 94 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccC
Confidence 4467889999999999999999999999997521 111 11101112233 5778888866666666655532
Q ss_pred ---CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHHH
Q psy3762 207 ---FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRVI 256 (595)
Q Consensus 207 ---~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~l 256 (595)
.-|+|++|+|||.|.....|.-||+|+++|..+.+. .|++.++-+.++.+
T Consensus 95 ~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 95 RPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred CCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 248999999999999888888899999999987752 56666666665555
No 82
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=98.22 E-value=5e-06 Score=93.69 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=101.3
Q ss_pred cccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhh-------HHHHHHH
Q psy3762 271 VIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEI-------NYYTQFV 343 (595)
Q Consensus 271 rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-------~~~~~~~ 343 (595)
-+.|.++|.+.|.+. +++++|++++|.++.|.+|.+.+ +|.+|++|.+..++|+++ ++|.+++
T Consensus 260 ll~~~~~l~~~g~~v-----~~eI~DVTdlF~~t~fkvf~~~l-----~VkaI~vpg~~~lsrkei~pgrr~gdeL~e~a 329 (620)
T TIGR00134 260 LLKIRDELQERGAVV-----EEKIFDVTEVFADTKSKIISNAE-----SVKAVLLRGFDGLVGVEIQPGRRLGTEFADYA 329 (620)
T ss_pred HHHhhhhHhhcCCcc-----ccccccccHhhccCCchhccccc-----eEEEEEcCCCcccchhhhcccccchHHHHHHH
Confidence 456888888888754 35899999999999999998643 799999998777999999 8999999
Q ss_pred HHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHH
Q psy3762 344 KTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALR 412 (595)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r 412 (595)
+.+|.+|+.|+ + ++ +...++.+..+.+.+.++++.||+++|.+++...++++||++.
T Consensus 330 K~~GakGL~~~---d------el---p~~~it~eev~~L~e~l~ak~GD~ll~vAdk~~~v~~aL~~v~ 386 (620)
T TIGR00134 330 KKRGVGGIFHT---D------EL---PAYGITEEEVRGLRDAVGAEQGDAVVMVAHERVTVERALREVI 386 (620)
T ss_pred HHcCCCceEee---c------cc---ccCCCCHHHHHHHHHHhCCCCCCEEEEEcCcHHHHHHHHHHHH
Confidence 99999999886 2 12 0222678889999999999999999999999999999999973
No 83
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.19 E-value=5.4e-06 Score=84.62 Aligned_cols=115 Identities=26% Similarity=0.294 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-----cc-ccccccCCCCCeeeccCChHHHHHHHHh----h
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-----RD-YLVPSRINPGEFFALPQSPQLFKQLLMV----A 205 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-----~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~----~ 205 (595)
.+++..|.+.+++.|.+.||.||.||+|.... ..|. .+ |.+. ...++.++|+...+..+-.+++ +
T Consensus 31 ~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~--d~~~~~l~LrPt~e~~~t~~~~~~i~s 108 (255)
T cd00779 31 LRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLK--DRHGKEFLLGPTHEEVITDLVANEIKS 108 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEe--cCCCCeEEEecCCcHHHHHHHHhcccc
Confidence 67789999999999999999999999998721 0121 11 2111 1224567787653322222212 1
Q ss_pred ---CCCceEEEecceecC-CCCCC--CCccccccccccccCCHHHHHHHHHHHHHH
Q psy3762 206 ---NFDRYYQITKCFRDE-DLRSD--RQPEFTQIDCETSFMNEEEIRNLFEEMIRV 255 (595)
Q Consensus 206 ---g~~rvf~i~~~FR~E-~~~~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~ 255 (595)
-.-|+|++++|||+| ..... |..||+|.|.+..+.+..+..+..++++..
T Consensus 109 ~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 109 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred HhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 134899999999999 54555 888999999999888776666655555443
No 84
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=98.13 E-value=9e-06 Score=85.20 Aligned_cols=117 Identities=25% Similarity=0.320 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC------CCCCccccccccCCCCCeeeccCChHHHHHHHHhhC----
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST------PEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVAN---- 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g---- 206 (595)
.-.+.+..+.+.+++.|..+||.+|+||++.... ++.... ...+.+..|+.+.|+.-.....-++++..
T Consensus 8 ~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~-~~~~~D~~G~~l~LR~D~T~~iaR~~a~~~~~~ 86 (311)
T PF13393_consen 8 EEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDN-MYRFLDRSGRVLALRPDLTVPIARYVARNLNLP 86 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGC-SEEEECTTSSEEEE-SSSHHHHHHHHHHCCGSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhh-hEEEEecCCcEeccCCCCcHHHHHHHHHhcCcC
Confidence 4477889999999999999999999999998732 111111 11222346788889877777777766653
Q ss_pred -CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHH
Q psy3762 207 -FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIR 254 (595)
Q Consensus 207 -~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~ 254 (595)
..|+|++|+|||.+.....+.-||+|+.+|..+.+. .|++.++-+++.
T Consensus 87 ~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 87 RPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 258999999999998877766699999999988762 577777777765
No 85
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.11 E-value=5.3e-06 Score=84.97 Aligned_cols=119 Identities=16% Similarity=0.100 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC---CCC-----c-c-ccccccCCC--CCeeeccCChHHHHHHHHh-
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP---EGA-----R-D-YLVPSRINP--GEFFALPQSPQLFKQLLMV- 204 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~ga-----~-~-f~~~~~~~~--~~~~~L~~Spql~~q~ll~- 204 (595)
-.+++..|.+.+++.+.+.||.||.||.|....- .++ . + |.+...... ++.++|....+..+-.+.+
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~ 110 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSK 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHh
Confidence 3677889999999999999999999999987421 111 1 1 211110000 1347787664433333222
Q ss_pred ---h---CCCceEEEecceecCCCCC---CCCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 205 ---A---NFDRYYQITKCFRDEDLRS---DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 205 ---~---g~~rvf~i~~~FR~E~~~~---~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
+ -.-|+|++++|||+|..++ .|-.||+|.|.+..+++.++..+..++++...
T Consensus 111 ~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 111 WIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred hccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 1 1348999999999999763 36679999999998999988888888776544
No 86
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.10 E-value=2.2e-05 Score=80.62 Aligned_cols=116 Identities=19% Similarity=0.164 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC------cc-ccccccCCCC----CeeeccCChHHHHHHHHh
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA------RD-YLVPSRINPG----EFFALPQSPQLFKQLLMV 204 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga------~~-f~~~~~~~~~----~~~~L~~Spql~~q~ll~ 204 (595)
.+++..|.+.+++-+.+.||.||.||.|.... ..|. .+ |.+. ...+ +.++|+...+...-.+.+
T Consensus 32 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~--~~~~~~~~~~l~LrPt~e~~~~~~~~ 109 (264)
T cd00772 32 KAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFK--DAGDEELEEDFALRPTLEENIGEIAA 109 (264)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEE--eCCCCccCceEEECCCCCHHHHHHHH
Confidence 56788999999999999999999999998732 1121 11 2211 1122 557787655544333322
Q ss_pred h------C-CCceEEEecceecCCCC-CC--CCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 205 A------N-FDRYYQITKCFRDEDLR-SD--RQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 205 ~------g-~~rvf~i~~~FR~E~~~-~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
. . .-|+|++++|||+|... .. |..||+|.|.+..+++.++..+.++.++...
T Consensus 110 ~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~ 171 (264)
T cd00772 110 KFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAY 171 (264)
T ss_pred hhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHH
Confidence 1 1 34999999999999544 33 7779999999987788888888777777443
No 87
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.09 E-value=3.7e-06 Score=85.80 Aligned_cols=96 Identities=24% Similarity=0.213 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhhhCC--CeeccCceeecCCCCCCccccccc--cCCCCCeeeccCChH----HHHHHHHhhC----
Q psy3762 139 LRLRYKVTMEVRKFLDSKK--FIEIETPILSKSTPEGARDYLVPS--RINPGEFFALPQSPQ----LFKQLLMVAN---- 206 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~g--F~EV~TPiL~~~~~~ga~~f~~~~--~~~~~~~~~L~~Spq----l~~q~ll~~g---- 206 (595)
.+++..|.+.+|+.|...| |.||+||+|.+.. -|.... ....+..++|+.... ...++.....
T Consensus 32 ~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~-----mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~l 106 (254)
T cd00774 32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPEL-----MFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRRKL 106 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHH-----HheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCCCC
Confidence 6788999999999999885 9999999998741 111100 001233456653222 2333333322
Q ss_pred CCceEEEecceecCCCCC---CCCcccccccccccc
Q psy3762 207 FDRYYQITKCFRDEDLRS---DRQPEFTQIDCETSF 239 (595)
Q Consensus 207 ~~rvf~i~~~FR~E~~~~---~r~~EFt~lE~e~~~ 239 (595)
.-|+||||+|||+|.+.. .|--||||.|+|.-.
T Consensus 107 P~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~ 142 (254)
T cd00774 107 PFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFV 142 (254)
T ss_pred CchhhhhchhhccccCcccceeeeccchhhheeeeE
Confidence 248999999999998766 688899999999744
No 88
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.03 E-value=2.5e-05 Score=80.90 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCC---Ccc-ccccccCCCCCeeeccCChHHHHHHHHhhC------
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEG---ARD-YLVPSRINPGEFFALPQSPQLFKQLLMVAN------ 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~g---a~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g------ 206 (595)
.-...+..+.+.+++.|..+||.||+||++.....-+ ... |. +.+..|+.+.|+.-......+.++..
T Consensus 17 ~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~--~~D~~g~~l~LRpD~T~~iaR~~a~~~~~~~~ 94 (281)
T PRK12293 17 KSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIR--FSDEKNHQISLRADSTLDVVRIVTKRLGRSTE 94 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEE--EECCCCCEEEECCcCCHHHHHHHHHhcccCCC
Confidence 3466788999999999999999999999998643211 111 21 12235677788865555555544432
Q ss_pred CCceEEEecceecCCCCCCCCccccccccccccCC-HHHHHHHHHHHHHHH
Q psy3762 207 FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN-EEEIRNLFEEMIRVI 256 (595)
Q Consensus 207 ~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~-~~dl~~~~E~ll~~l 256 (595)
.-|.|++|+|||.|. .||+|+.+|+.+.+ ..|++.++-+.++.+
T Consensus 95 p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 95 HKKWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred ceeEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 348999999999874 59999999998876 456666555555444
No 89
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=98.03 E-value=2.8e-05 Score=87.97 Aligned_cols=121 Identities=26% Similarity=0.302 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCC-----Ccc-ccccccCCCCCeeeccCChHHHHHHH----Hh
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEG-----ARD-YLVPSRINPGEFFALPQSPQLFKQLL----MV 204 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~g-----a~~-f~~~~~~~~~~~~~L~~Spql~~q~l----l~ 204 (595)
-.+++..|.+.+|+.|.+.||.||.||.|.+.. ..| ..+ |... ...++.++|+...+-.+-.+ +.
T Consensus 46 g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~--dr~~~~l~LrPT~Ee~~t~~~~~~i~ 123 (568)
T TIGR00409 46 GLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLK--DRKGREFVLGPTHEEVITDLARNEIK 123 (568)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEe--cCCCCEEEEcCCCcHHHHHHHHHHHh
Confidence 467889999999999999999999999998831 111 111 2221 12355677875433221111 12
Q ss_pred h---CCCceEEEecceecC-CCCCC--CCccccccccccccCCHHHHHHHHHHHH---HHHHHHH
Q psy3762 205 A---NFDRYYQITKCFRDE-DLRSD--RQPEFTQIDCETSFMNEEEIRNLFEEMI---RVIFYKT 260 (595)
Q Consensus 205 ~---g~~rvf~i~~~FR~E-~~~~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll---~~l~~~~ 260 (595)
+ -.-|+|||++|||+| ..... |-.||+|.|.|....+.++.....+.++ ..+++.+
T Consensus 124 syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 124 SYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred hccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 2 234999999999999 55555 8889999999998887766665666544 5566554
No 90
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=98.00 E-value=3.2e-05 Score=87.80 Aligned_cols=121 Identities=25% Similarity=0.277 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCC-----Ccc-ccccccCCCCCeeeccCChHHHHHHHHh----
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEG-----ARD-YLVPSRINPGEFFALPQSPQLFKQLLMV---- 204 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~g-----a~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~---- 204 (595)
-++++..|.+.+|+.|.+.||.||.||+|.+.. ..| ..+ |... ...++.++|+...+-..-.++.
T Consensus 46 g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~--d~~~~~l~LrPt~e~~~~~~~~~~~~ 123 (565)
T PRK09194 46 GLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLK--DRHGRDFVLGPTHEEVITDLVRNEIK 123 (565)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEe--cCCCCEEEECCCChHHHHHHHHhhhh
Confidence 477889999999999999999999999998631 111 112 2211 1234567777544422222111
Q ss_pred h---CCCceEEEecceecC-CCCCC--CCccccccccccccCCHHHHHHHHHHHH---HHHHHHH
Q psy3762 205 A---NFDRYYQITKCFRDE-DLRSD--RQPEFTQIDCETSFMNEEEIRNLFEEMI---RVIFYKT 260 (595)
Q Consensus 205 ~---g~~rvf~i~~~FR~E-~~~~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll---~~l~~~~ 260 (595)
+ -.-|+|||++|||+| ....+ |-.||+|.|.|....+.++.....+.++ ..+++.+
T Consensus 124 s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 124 SYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred hcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 1 134899999999999 55555 8889999999998777655555444444 5555443
No 91
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.89 E-value=7.1e-05 Score=78.18 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-----cc-ccccccCCCCCeeeccCChHHHHHHHHhh----
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-----RD-YLVPSRINPGEFFALPQSPQLFKQLLMVA---- 205 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-----~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~---- 205 (595)
.+++..|.+.+++.+.+.||.||.||.|.... ..|. .+ |.+ ...++.++|+...+...-++.+.
T Consensus 30 ~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~---~~~~~~l~LRP~~~~~~~~~~~~~~~s 106 (298)
T cd00771 30 AIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPF---EEEDEEYGLKPMNCPGHCLIFKSKPRS 106 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEe---ccCCceEEEcccCCHHHHHHHHhhccc
Confidence 67788999999999999999999999998732 1121 11 221 12345567764443333222221
Q ss_pred ---CCCceEEEecceecCCCCC----CCCccccccccccccCCHHHHHHHHHHHHH
Q psy3762 206 ---NFDRYYQITKCFRDEDLRS----DRQPEFTQIDCETSFMNEEEIRNLFEEMIR 254 (595)
Q Consensus 206 ---g~~rvf~i~~~FR~E~~~~----~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~ 254 (595)
-.-|+|++|+|||+|.... .|..||+|.|.+..... ++..+.+++++.
T Consensus 107 ~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~-e~~~~e~~e~l~ 161 (298)
T cd00771 107 YRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTP-DQIKEEIKGVLD 161 (298)
T ss_pred hhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCC-cchHHHHHHHHH
Confidence 1349999999999998753 47779999999985333 333333333333
No 92
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.89 E-value=4.2e-05 Score=85.89 Aligned_cols=121 Identities=19% Similarity=0.190 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCCcc-cccc-c-cCCCCCeeeccCChHHHHHHHHhhC----
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGARD-YLVP-S-RINPGEFFALPQSPQLFKQLLMVAN---- 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga~~-f~~~-~-~~~~~~~~~L~~Spql~~q~ll~~g---- 206 (595)
.-.++|..|...+|+.+.++||.||.||.|.... ..|.-+ |... + ....++.++|+....-..-++.+..
T Consensus 166 ~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~Sy 245 (545)
T PRK14799 166 KGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245 (545)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccCh
Confidence 4678999999999999999999999999986531 122111 1110 0 0233566778755544443333321
Q ss_pred ---CCceEEEecceecCCCCC----CCCccccccccccccCCHHHHHHHHHHHHHHHHH
Q psy3762 207 ---FDRYYQITKCFRDEDLRS----DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFY 258 (595)
Q Consensus 207 ---~~rvf~i~~~FR~E~~~~----~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~ 258 (595)
.-|+|++|+|||.|.++. .|-.||||.|... |++.+++.+.+.+++..+..
T Consensus 246 rdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVE 303 (545)
T ss_pred hhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHH
Confidence 348999999999999987 6888999999998 88887777777666665543
No 93
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.85 E-value=7.1e-05 Score=81.74 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC-CCCc---cccc-cccCCCCCeeeccCChHHHHHHHHhh------
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP-EGAR---DYLV-PSRINPGEFFALPQSPQLFKQLLMVA------ 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-~ga~---~f~~-~~~~~~~~~~~L~~Spql~~q~ll~~------ 205 (595)
.-.++...+++.+++.+.+.||.||.||.|..... .+.+ .|.. .+.. .+.-++|....+..+-.+.+.
T Consensus 171 ~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i-~~~~~~L~pTsE~~~~~~~~~~i~s~~ 249 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKL-EDTDLYLIPTAEVPLTNLHRNEILEEE 249 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEe-cCCCEEEEeCCcHHHHHHHhCcCCChH
Confidence 56888999999999999999999999999987421 1111 1111 1111 233467876666555443332
Q ss_pred -CCCceEEEecceecCCCCC-------CCCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 206 -NFDRYYQITKCFRDEDLRS-------DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 206 -g~~rvf~i~~~FR~E~~~~-------~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
-.-|+|++|+|||+|.... -|-.||+|.|.+ +|++.++..+..++++...-
T Consensus 250 ~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~~~~~~ 308 (418)
T TIGR00414 250 ELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCKPEESAEELEEMTSDAE 308 (418)
T ss_pred hCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcCHHHHHHHHHHHHHHHH
Confidence 1358999999999997532 277799999995 68888888777777766553
No 94
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.83 E-value=6.2e-05 Score=86.75 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCCcc-ccc-cc-cCCCCCeeeccCChHHHHHHHHhhC-----
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGARD-YLV-PS-RINPGEFFALPQSPQLFKQLLMVAN----- 206 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga~~-f~~-~~-~~~~~~~~~L~~Spql~~q~ll~~g----- 206 (595)
-..++..|.+.+++.+.+.||.||.||+|.... ..|.-+ |.. .+ ....++.++|+...+...-++....
T Consensus 273 g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~ 352 (639)
T PRK12444 273 GQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYR 352 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChh
Confidence 355778899999999999999999999998732 123111 111 11 1123456778766655544433322
Q ss_pred --CCceEEEecceecCCCCC--C--CCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 207 --FDRYYQITKCFRDEDLRS--D--RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 207 --~~rvf~i~~~FR~E~~~~--~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
.-|+|++|+|||.|.+.+ . |..||+|.|.+ +|++.+++.+.+++++..+.
T Consensus 353 ~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~ 408 (639)
T PRK12444 353 ELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQID 408 (639)
T ss_pred hCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHHHH
Confidence 348999999999999754 4 77799999999 68887777776666665543
No 95
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.81 E-value=6.9e-05 Score=80.60 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCC----CCC--ccccccccCCCCCeeeccCChHHHHHHHHhh----CCCceEE
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTP----EGA--RDYLVPSRINPGEFFALPQSPQLFKQLLMVA----NFDRYYQ 212 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~----~ga--~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~----g~~rvf~ 212 (595)
..+.+.+++.|.++||.||+||++..... .|. ..-...+.+..|+.+.|+.-.....-+..+. ...|+|+
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~~Y 87 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPARYAY 87 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEEEE
Confidence 47889999999999999999999977421 111 1101112234567778875554444443332 2358999
Q ss_pred EecceecCCCCCCCCccccccccccccC-C----HHHHHHHHHHHHHHH
Q psy3762 213 ITKCFRDEDLRSDRQPEFTQIDCETSFM-N----EEEIRNLFEEMIRVI 256 (595)
Q Consensus 213 i~~~FR~E~~~~~r~~EFt~lE~e~~~~-~----~~dl~~~~E~ll~~l 256 (595)
+|+|||.| ..|.-||+|+.+|..+. + ..|++.++-+.++.+
T Consensus 88 ~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 88 LGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 99999998 44555999999999875 3 258888887777655
No 96
>PLN02908 threonyl-tRNA synthetase
Probab=97.81 E-value=7.8e-05 Score=86.45 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCCc-cccc-ccc-CCCCCeeeccCChHHHHHHHHhh----
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGAR-DYLV-PSR-INPGEFFALPQSPQLFKQLLMVA---- 205 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga~-~f~~-~~~-~~~~~~~~L~~Spql~~q~ll~~---- 205 (595)
-.-.+++..|++.+|+.+.++||.||.||.|.... ..|.- .|.. .+. ...++.++|+...+...-.+.+.
T Consensus 318 P~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s 397 (686)
T PLN02908 318 PHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRS 397 (686)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccC
Confidence 35678999999999999999999999999998732 11210 0111 011 12345677765444433332221
Q ss_pred ---CCCceEEEecceecCCCC----CCCCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 206 ---NFDRYYQITKCFRDEDLR----SDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 206 ---g~~rvf~i~~~FR~E~~~----~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
-.-|+|++|+|||+|.+. -.|-.||+|.|.+. |+..+++.+.+++++..+.
T Consensus 398 ~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~ 455 (686)
T PLN02908 398 YRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLD 455 (686)
T ss_pred hhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHH
Confidence 134899999999999884 44777999999997 8887888888877776654
No 97
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=97.79 E-value=0.0014 Score=65.07 Aligned_cols=69 Identities=23% Similarity=0.381 Sum_probs=51.4
Q ss_pred CEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCC-CCCccceeccHHHHHHHHcCCCCcccccc
Q psy3762 487 GWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYG-APPHGGIAFGLDRLITIMTGSKSIRDVIA 560 (595)
Q Consensus 487 G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G-~PPh~G~glGlDRLvm~l~g~~~IRdvi~ 560 (595)
+.|+.+=++|. |.+.+++.++..|..+. ..+.| -.++=.| +|.+-|-|||=-||+|+|+..+.|-+|-+
T Consensus 246 afElSSMGIRV-de~~l~~Ql~ltgdeDr---l~~~w-Hq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 246 AFELSSMGIRV-DEDALKRQLALTGDEDR---LELEW-HQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred hheeecceeEe-cHHHHHHHHhccCchhh---hcCHH-HHHHHcCCCCccccCcccHHHHHHHHhcccccceeee
Confidence 45999999987 45556666666554322 23555 4555555 99999999999999999999999998754
No 98
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.75 E-value=0.00013 Score=83.18 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-----cc-ccccccCCCCCeeeccCChHHHHHHHHhh-
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-----RD-YLVPSRINPGEFFALPQSPQLFKQLLMVA- 205 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-----~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~- 205 (595)
-.-.+++..|.+.+++.|.+.||.||.||+|.... ..|. .+ |.. ....++.++|+....-..-++.+.
T Consensus 203 p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~--~d~~~~~~~LRP~~~~~~~~~~~~~ 280 (575)
T PRK12305 203 PKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPP--MEIDEEEYYLKPMNCPGHILIYKSR 280 (575)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccc--cccCCceEEEecCCCHHHHHHHhcc
Confidence 35678899999999999999999999999998731 1121 11 211 122456677764322222111121
Q ss_pred ------CCCceEEEecceecCCCCC----CCCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 206 ------NFDRYYQITKCFRDEDLRS----DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 206 ------g~~rvf~i~~~FR~E~~~~----~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
-.-|.|++|+|||+|.... .|-.||+|.|++. |.+.+...+.+.+++..+.
T Consensus 281 ~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~ 341 (575)
T PRK12305 281 LRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVL 341 (575)
T ss_pred cCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHH
Confidence 1349999999999998753 4667999999995 6666555555555554443
No 99
>KOG2784|consensus
Probab=97.70 E-value=3.8e-05 Score=79.42 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=43.7
Q ss_pred CceEEEecceecCCCCCCCCccccccccccccCC--HHHHHHHHHHHHHHH
Q psy3762 208 DRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMN--EEEIRNLFEEMIRVI 256 (595)
Q Consensus 208 ~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~--~~dl~~~~E~ll~~l 256 (595)
.|+|.|-+|||||..|++|.-||+|+|...+..+ +.++|.++++++..+
T Consensus 334 ~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 334 AKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred ccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999988775 699999999876654
No 100
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.65 E-value=0.00012 Score=76.40 Aligned_cols=119 Identities=20% Similarity=0.220 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-ccccc-cccCCCCCeeeccCChHHHHHHHHhh------
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-RDYLV-PSRINPGEFFALPQSPQLFKQLLMVA------ 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-~~f~~-~~~~~~~~~~~L~~Spql~~q~ll~~------ 205 (595)
.-.+++..|.+.+++.+.+.||.||.||.|.... ..|- ..|.. .+.. .++.++|....+...-.+.+.
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v-~~~~~~L~pt~e~~~~~l~~~~~~s~~ 128 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKV-EGEDLYLIATAEVPLAALHRDEILEEE 128 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEe-cCCCEEEeecCCHHHHHHHhcccCCHh
Confidence 4578889999999999999999999999998742 1121 01110 1111 124467776666555554432
Q ss_pred -CCCceEEEecceecCCCC-------CCCCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 206 -NFDRYYQITKCFRDEDLR-------SDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 206 -g~~rvf~i~~~FR~E~~~-------~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
-.-|+|++|+|||+|... --|..||+|.|.+. |+..++..+..++++....
T Consensus 129 ~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~~~~ 187 (297)
T cd00770 129 ELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELISNAE 187 (297)
T ss_pred hCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHHHHHH
Confidence 235899999999999762 22666999999974 6655666666666555443
No 101
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.65 E-value=0.00022 Score=82.26 Aligned_cols=110 Identities=22% Similarity=0.193 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-cccc-ccc--cCCCCCeeeccCChHHHHHHHHhh--
Q psy3762 135 MQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-RDYL-VPS--RINPGEFFALPQSPQLFKQLLMVA-- 205 (595)
Q Consensus 135 ~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-~~f~-~~~--~~~~~~~~~L~~Spql~~q~ll~~-- 205 (595)
+-.-.+++..|.+.+++.|.+.||.||.||++.... ..|. ..+. ..+ ....++.+.|+....-..-++.+.
T Consensus 266 lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~ 345 (638)
T PRK00413 266 HPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGL 345 (638)
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcC
Confidence 335678899999999999999999999999998632 1121 1111 011 123456677764333322222221
Q ss_pred -----CCCceEEEecceecCCCCC----CCCccccccccccccCCHHHH
Q psy3762 206 -----NFDRYYQITKCFRDEDLRS----DRQPEFTQIDCETSFMNEEEI 245 (595)
Q Consensus 206 -----g~~rvf~i~~~FR~E~~~~----~r~~EFt~lE~e~~~~~~~dl 245 (595)
-.-|+|++|+|||.|.... .|..||+|+|++. |...+..
T Consensus 346 ~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~-~g~~~~~ 393 (638)
T PRK00413 346 RSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHI-FCTPEQI 393 (638)
T ss_pred CChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEE-EcCHHHH
Confidence 1359999999999998864 3777999999997 4444333
No 102
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.64 E-value=0.00027 Score=80.30 Aligned_cols=118 Identities=23% Similarity=0.173 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCCcc-ccc-cc--cCCCCCeeeccCChHHHHHHHHhh----
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGARD-YLV-PS--RINPGEFFALPQSPQLFKQLLMVA---- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga~~-f~~-~~--~~~~~~~~~L~~Spql~~q~ll~~---- 205 (595)
.-.+++..|.+.+|+.+.+.||.||.||++.... ..|..+ +.. .+ ....|+.++|+...+...-++.+.
T Consensus 198 ~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s 277 (563)
T TIGR00418 198 KGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRS 277 (563)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCC
Confidence 4577899999999999999999999999998632 112111 110 11 122456788876555444433332
Q ss_pred ---CCCceEEEecceecCCCCC----CCCccccccccccccCCHHHHHHHHHHHHHH
Q psy3762 206 ---NFDRYYQITKCFRDEDLRS----DRQPEFTQIDCETSFMNEEEIRNLFEEMIRV 255 (595)
Q Consensus 206 ---g~~rvf~i~~~FR~E~~~~----~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~ 255 (595)
-.-|+|++|+|||+|.... .|..||+|.|+|.-.. .++.....++++..
T Consensus 278 ~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i~~ 333 (563)
T TIGR00418 278 YRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQFRL 333 (563)
T ss_pred hHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHHHH
Confidence 1359999999999995432 2777999999997544 55555554444433
No 103
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.62 E-value=0.0002 Score=78.44 Aligned_cols=119 Identities=17% Similarity=0.195 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHhh-hCCCeeccCceeecCC-CCCCcc---ccc-cccCCCCCeeeccCChHHHHHHHHhhC----
Q psy3762 137 KNLRLRYKVTMEVRKFLD-SKKFIEIETPILSKST-PEGARD---YLV-PSRINPGEFFALPQSPQLFKQLLMVAN---- 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~-~~ga~~---f~~-~~~~~~~~~~~L~~Spql~~q~ll~~g---- 206 (595)
.-.++...|++.+++.+. +.||.||.||.|.... -.+.+. |.. .+.. .++.++|....+..+-.+.+..
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i-~~~~~~L~pTsE~~l~~l~~~~~~s~ 246 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKI-EDDDLYLIPTAEVPLTNLHRDEILDE 246 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEe-cCCCEEEEeCCcHHHHHHHhcccCCH
Confidence 457788999999999998 9999999999998732 111111 111 1111 2344678766666555444422
Q ss_pred ---CCceEEEecceecCCCCC-------CCCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 207 ---FDRYYQITKCFRDEDLRS-------DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 207 ---~~rvf~i~~~FR~E~~~~-------~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
.-|+|++++|||+|.... -|-.||+|.|.+ +|+..++..+..++++...-
T Consensus 247 ~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~~ 306 (425)
T PRK05431 247 EELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANAE 306 (425)
T ss_pred HhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHHH
Confidence 358999999999997542 267799999999 57777888877777766553
No 104
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.61 E-value=0.00025 Score=78.06 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-----cc-ccccccCCCCCeeeccCCh-HHHH----HHHH
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-----RD-YLVPSRINPGEFFALPQSP-QLFK----QLLM 203 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-----~~-f~~~~~~~~~~~~~L~~Sp-ql~~----q~ll 203 (595)
-.+++..|.+.+|+-+.+.||.||.||.|.+.. ..|. .+ |.+. ...++.++|+... +.+. ....
T Consensus 46 g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~--d~~~~~~~L~Pt~e~~~~~~~~~~~~ 123 (439)
T PRK12325 46 GLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIK--DRHDREMLYGPTNEEMITDIFRSYVK 123 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEe--cCCCCEEEEcCCCcHHHHHHHHHHhh
Confidence 367889999999999999999999999998731 1121 11 2211 1234567776432 2332 2221
Q ss_pred h--hCCCceEEEecceecCCCCC-C--CCccccccccccccCCHHHHHHHHHHHHHH
Q psy3762 204 V--ANFDRYYQITKCFRDEDLRS-D--RQPEFTQIDCETSFMNEEEIRNLFEEMIRV 255 (595)
Q Consensus 204 ~--~g~~rvf~i~~~FR~E~~~~-~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~ 255 (595)
. .-.-|+||+++|||+|.... + |-.||+|-|.+....+.+++.+...+++..
T Consensus 124 syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~ 180 (439)
T PRK12325 124 SYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVA 180 (439)
T ss_pred hchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHH
Confidence 1 12358999999999995432 2 777999999998778877776655555443
No 105
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.60 E-value=0.0002 Score=79.55 Aligned_cols=116 Identities=19% Similarity=0.191 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC----CC-----Ccc-ccccccCC--CCCeeeccCChH-----HHHH
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP----EG-----ARD-YLVPSRIN--PGEFFALPQSPQ-----LFKQ 200 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----~g-----a~~-f~~~~~~~--~~~~~~L~~Spq-----l~~q 200 (595)
-++++..|.+.+++.|.+.||.||.||.|.+.+- .| +.+ |.+..... .++.++|+...+ ++..
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~ 122 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHh
Confidence 4778899999999999999999999999977421 11 111 22211100 034577765542 2222
Q ss_pred HHHhhC---CCceEEEecceecCCCCCC---CCccccccccccccCCHHHHHHHHHHHHHH
Q psy3762 201 LLMVAN---FDRYYQITKCFRDEDLRSD---RQPEFTQIDCETSFMNEEEIRNLFEEMIRV 255 (595)
Q Consensus 201 ~ll~~g---~~rvf~i~~~FR~E~~~~~---r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~ 255 (595)
. +.+. .-|+||+++|||+|.. ++ |-.||+|.|.+..+++.++..+.++.++..
T Consensus 123 ~-i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~ 181 (477)
T PRK08661 123 W-IQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEI 181 (477)
T ss_pred h-hcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHH
Confidence 2 2221 3489999999999997 43 667999999999999988887777776653
No 106
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.55 E-value=0.00021 Score=79.30 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCC------Ccc-ccccccCC--CCCeeeccCChHHHHHHHHh--
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEG------ARD-YLVPSRIN--PGEFFALPQSPQLFKQLLMV-- 204 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~g------a~~-f~~~~~~~--~~~~~~L~~Spql~~q~ll~-- 204 (595)
.+++..|...+++-+.+.||.||.||.|.+.+ .+| ..+ |.+...-. .++.++|+...+...-.+.+
T Consensus 38 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~ 117 (472)
T TIGR00408 38 FKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKW 117 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcc
Confidence 56689999999999999999999999997632 112 111 22211100 12567787665544432222
Q ss_pred --h---CCCceEEEecceecCCCCC---CCCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 205 --A---NFDRYYQITKCFRDEDLRS---DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 205 --~---g~~rvf~i~~~FR~E~~~~---~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
+ -.-|+||+++|||+|...+ .|-.||+|.|.+..+++.++..+.++.++...
T Consensus 118 i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 118 VKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIY 177 (472)
T ss_pred ccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 1 1248999999999999764 36679999999988999888887777766543
No 107
>KOG1936|consensus
Probab=97.50 E-value=0.00028 Score=74.76 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecC------CCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCC---C
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKS------TPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANF---D 208 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~------~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~---~ 208 (595)
-+.+|..|++.+.+-|..+|...|+||++.-- -.|.. ...-...+..|+...|+---.....++++.+- -
T Consensus 73 qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~si 151 (518)
T KOG1936|consen 73 QMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITSI 151 (518)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccHHHHHHHHcccccc
Confidence 37889999999999999999999999977541 12222 11112223467788888777777788777652 3
Q ss_pred ceEEEecceecCCC--CCCCCcccccccccccc-CC----HHHHHHHHHHHHHHH
Q psy3762 209 RYYQITKCFRDEDL--RSDRQPEFTQIDCETSF-MN----EEEIRNLFEEMIRVI 256 (595)
Q Consensus 209 rvf~i~~~FR~E~~--~~~r~~EFt~lE~e~~~-~~----~~dl~~~~E~ll~~l 256 (595)
+.|+|+++||.+.. ...|..||+|+|+-.++ .+ ..+++..+-+++..+
T Consensus 152 kRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l 206 (518)
T KOG1936|consen 152 KRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRL 206 (518)
T ss_pred eeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhc
Confidence 67999999999876 56677799999999887 23 267777777766544
No 108
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.43 E-value=0.00077 Score=69.40 Aligned_cols=101 Identities=8% Similarity=-0.013 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC--C-C--Cccc-cccccCCCCCeeeccCChHHHHHHHHhh---C
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP--E-G--ARDY-LVPSRINPGEFFALPQSPQLFKQLLMVA---N 206 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--~-g--a~~f-~~~~~~~~~~~~~L~~Spql~~q~ll~~---g 206 (595)
++.+..+..+.+.+++.|.++||.+|+||++..... . + .... ...+....|+.+.|+.-......++++. +
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~~ 83 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPTA 83 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCCC
Confidence 455667789999999999999999999999975321 1 1 1110 0011123578888887666666665443 4
Q ss_pred CCceEEEecceecCCCCCCCCccccccccccccCCHH
Q psy3762 207 FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEE 243 (595)
Q Consensus 207 ~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~~ 243 (595)
..|.|++|+|||.+. +|+|+.+|..+.+.+
T Consensus 84 ~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~ 113 (272)
T PRK12294 84 ATKVAYAGLIIRNNE-------AAVQVGIENYAPSLA 113 (272)
T ss_pred CceEEEeccEeccCC-------CcceeceEEECCCch
Confidence 469999999999874 489999999885543
No 109
>PLN02837 threonine-tRNA ligase
Probab=97.32 E-value=0.001 Score=76.27 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC-CCCCcc---ccc-ccc--CCCCCeeeccCChHHH-HHHHHhh---
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST-PEGARD---YLV-PSR--INPGEFFALPQSPQLF-KQLLMVA--- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~~ga~~---f~~-~~~--~~~~~~~~L~~Spql~-~q~ll~~--- 205 (595)
.-.+++..|.+.+++...++||.||.||.|.... -.+++. |.. .+. ...++.|.|+.+.+-. ..+ ...
T Consensus 245 ~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~-~~~~~~ 323 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILV-YKRKLH 323 (614)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHH-HhCccC
Confidence 4678999999999999999999999999998732 111110 111 111 1124566777655433 222 111
Q ss_pred ----CCCceEEEecceecCCCCCC----CCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 206 ----NFDRYYQITKCFRDEDLRSD----RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 206 ----g~~rvf~i~~~FR~E~~~~~----r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
-.-|++++|+|||+|.+++. |-.||+|.|.+. |+..++..+.++.++..+-
T Consensus 324 SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~ 382 (614)
T PLN02837 324 SYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTE 382 (614)
T ss_pred ChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHH
Confidence 23589999999999987543 666999999995 9988888888887776553
No 110
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.31 E-value=0.00097 Score=76.13 Aligned_cols=120 Identities=21% Similarity=0.192 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCC------CccccccccCCCCCeeeccCChHHHHHHHHhh--
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEG------ARDYLVPSRINPGEFFALPQSPQLFKQLLMVA-- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~g------a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~-- 205 (595)
.-.+++..|.+.+++.+.+.||.+|.||.+.... -.| ..-|.+. ..++.++|+...+...-.+...
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~---~~~e~l~Lrp~~c~~~~~~~~~~~ 301 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVK---SDKKDLMLRFAACFGQFLMLKDMT 301 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEec---CCCceEEEecCCCHHHHHHHhCCc
Confidence 5678999999999999999999999999885421 111 1112221 2234567764443222221111
Q ss_pred -----CCCceEEEec-ceecCCCCCC----CCccccccccccccCCHHHHHHHHHHHHHHHHHH
Q psy3762 206 -----NFDRYYQITK-CFRDEDLRSD----RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYK 259 (595)
Q Consensus 206 -----g~~rvf~i~~-~FR~E~~~~~----r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~ 259 (595)
-.-|+||+|+ |||+|.+... |-.||+|.|.+.-..+.++.++..++++..+..-
T Consensus 302 ~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i 365 (613)
T PRK03991 302 ISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILET 365 (613)
T ss_pred CchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 1348999999 9999986543 6669999999975555788888888887776543
No 111
>PLN02678 seryl-tRNA synthetase
Probab=97.03 E-value=0.0013 Score=72.15 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC-CCCCc---cccc-cccCC-C-CCeeeccCC--hH--HHHHHHH--
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST-PEGAR---DYLV-PSRIN-P-GEFFALPQS--PQ--LFKQLLM-- 203 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~~ga~---~f~~-~~~~~-~-~~~~~L~~S--pq--l~~q~ll-- 203 (595)
.-.+++..|++.+++++.++||+||.||.|.... -.+++ .|.. .+... . .+.|-+.+| |. +|....+
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~ 251 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDP 251 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCH
Confidence 4488899999999999999999999999998632 12211 1211 11111 1 233334433 21 2221111
Q ss_pred hhCCCceEEEecceecCCCCC-------CCCccccccccccccCCHHH--HHHHHHHHHHHH
Q psy3762 204 VANFDRYYQITKCFRDEDLRS-------DRQPEFTQIDCETSFMNEEE--IRNLFEEMIRVI 256 (595)
Q Consensus 204 ~~g~~rvf~i~~~FR~E~~~~-------~r~~EFt~lE~e~~~~~~~d--l~~~~E~ll~~l 256 (595)
..-.-|++++++|||+|.+.. .|..+|+++|.. +++..++ ..+..|+++...
T Consensus 252 ~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 252 KELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMHEEMLKNS 312 (448)
T ss_pred HhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHHHHHHHHH
Confidence 122469999999999998631 266699999995 4544444 666666666544
No 112
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=96.91 E-value=0.012 Score=48.35 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=56.4
Q ss_pred EEEEEEEEeEec-cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEE
Q psy3762 18 ISLCGWVHRKRN-HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILC 96 (595)
Q Consensus 18 V~i~GwV~~~R~-~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v 96 (595)
++|.|-|.++|. .++.+|+.|.|.++.+.+++-++.. .+....|..|+.|.|.|.+...+ ..+++.+.+
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~--~~~~~~l~~g~~v~v~g~v~~~~--------~~~~~~l~v 71 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNA--RRLGFPLEEGMEVLVRGKVSFYE--------PRGGYQLIV 71 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchh--hhCCCCCCCCCEEEEEEEEEEEC--------CCCEEEEEE
Confidence 678999998885 4459999999999999999887631 12234589999999999998642 135688888
Q ss_pred eeEE
Q psy3762 97 RELK 100 (595)
Q Consensus 97 ~~i~ 100 (595)
+++.
T Consensus 72 ~~i~ 75 (78)
T cd04489 72 EEIE 75 (78)
T ss_pred EEEE
Confidence 8774
No 113
>PLN02320 seryl-tRNA synthetase
Probab=96.76 E-value=0.0031 Score=69.80 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC-CCCCcc---ccc--cccCCCCCeeeccCChH-----HHHHHHHh--
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST-PEGARD---YLV--PSRINPGEFFALPQSPQ-----LFKQLLMV-- 204 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~~ga~~---f~~--~~~~~~~~~~~L~~Spq-----l~~q~ll~-- 204 (595)
..++...+++.++++..++||+||.||.|.... -++++. +.. .+.. .++-+||.-..| +|+...+.
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i-e~ed~~Li~TaE~Pl~~~~~~~ils~~ 310 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI-DGSDQCLIGTAEIPVGGIHMDSILLES 310 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEE-CCCceEEeecccccccccccccccCHh
Confidence 345667888999999999999999999998742 222221 100 1111 233456632222 33332211
Q ss_pred hCCCceEEEecceecCCCCCC-------CCccccccccccccCCHHHHHHHHHHHHHHHHH
Q psy3762 205 ANFDRYYQITKCFRDEDLRSD-------RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFY 258 (595)
Q Consensus 205 ~g~~rvf~i~~~FR~E~~~~~-------r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~ 258 (595)
.-.-|+..+|+|||.|-...+ |..+|++.|... |+..++..+..++++..+..
T Consensus 311 dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 311 ALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred hCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 124699999999999977333 677999999985 77778888888888776644
No 114
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.61 E-value=0.014 Score=47.85 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=57.2
Q ss_pred EEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEe
Q psy3762 18 ISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCR 97 (595)
Q Consensus 18 V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~ 97 (595)
|+|.|-|.+.+..|+=+|+.|+|+...+.|++=+... ......+..|+-|.|.|.+.. +.|.+.+.++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~a~i~cv~f~~~~--~~~~~~l~~Gd~V~v~G~v~~----------~~G~~ql~v~ 68 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDETGTVWAAAFEEAG--VRAYPEVEVGDIVRVTGEVEP----------RDGQLQIEVE 68 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCCEEEEEEEEchhc--cCCcCCCCCCCEEEEEEEEec----------CCeEEEEEEe
Confidence 5788988876546677899999999999998765421 223456899999999999863 3688999999
Q ss_pred eEEEe
Q psy3762 98 ELKIL 102 (595)
Q Consensus 98 ~i~vl 102 (595)
++++|
T Consensus 69 ~i~~~ 73 (73)
T cd04487 69 SLEVL 73 (73)
T ss_pred eEEEC
Confidence 99885
No 115
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.60 E-value=0.0036 Score=69.20 Aligned_cols=51 Identities=27% Similarity=0.255 Sum_probs=38.5
Q ss_pred CCceEEEecceecCCCCCC---CCccccccccccccCCHHHHHHHHHHHHHHHHH
Q psy3762 207 FDRYYQITKCFRDEDLRSD---RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFY 258 (595)
Q Consensus 207 ~~rvf~i~~~FR~E~~~~~---r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~ 258 (595)
.-|+.|+|+|||+|.+..+ |-.||+|.|.+ .|++.+++.+.+..++..+..
T Consensus 186 Plr~aq~g~~~RnE~s~~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 186 PFGIAQIGKSFRNEITPRNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred CeeeeEEchhHhCccCCCCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 3589999999999977521 44599999998 688887777766666655443
No 116
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=96.51 E-value=0.019 Score=49.36 Aligned_cols=71 Identities=24% Similarity=0.229 Sum_probs=53.4
Q ss_pred EEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--H----------------HHHHHhcCCCCcEEEEEeEEEeCCCC
Q psy3762 20 LCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--K----------------IYKIAKIIRNEFCLQIIGKVCSRPNK 81 (595)
Q Consensus 20 i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~----------------~~~~~~~l~~es~V~V~G~v~~~~~~ 81 (595)
|.|+|.+++....-.-+.|.|++|.|.|++=.... + ..+....+..|++|.|.|++..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~---- 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRT---- 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEec----
Confidence 68999999988766667999999999888643221 0 0124566999999999999975
Q ss_pred CCCCCcCCccEEEEEeeEE
Q psy3762 82 TNNTNLISGNIEILCRELK 100 (595)
Q Consensus 82 ~~~~~~~~g~iEl~v~~i~ 100 (595)
-.|...|.++.+.
T Consensus 78 ------frg~~ql~i~~~~ 90 (92)
T cd04483 78 ------YRGEREINASVVY 90 (92)
T ss_pred ------cCCeeEEEEEEEE
Confidence 3466778887765
No 117
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.48 E-value=0.024 Score=48.48 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=59.8
Q ss_pred EEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHH-HHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEE
Q psy3762 18 ISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIK-IYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILC 96 (595)
Q Consensus 18 V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~-~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v 96 (595)
|++.|+|.++...+.-.=+.|.|++|.+.+.+=....+ .......+..|++|.|.|.++. -.|...|.+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~----------~~g~~ql~i 71 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKS----------FQGKKSIMA 71 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEcc----------cCCeeEEEE
Confidence 78999999999987656679999999999887543321 0113466899999999999965 346788998
Q ss_pred eeEEEeecC
Q psy3762 97 RELKILNSS 105 (595)
Q Consensus 97 ~~i~vls~~ 105 (595)
.++..+...
T Consensus 72 ~~i~~v~d~ 80 (95)
T cd04478 72 FSIRPVTDF 80 (95)
T ss_pred EEEEEeCCc
Confidence 888877643
No 118
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.0037 Score=68.70 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=67.3
Q ss_pred cccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNN 84 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~ 84 (595)
.+.+|.. ++|++|+|.|-|..++.-++-+-+.|+|++|.+++-.-..- .....-.+..|++|.|+|.|..+
T Consensus 204 ~i~~id~-~ig~tV~I~GeV~qikqT~GPTVFtltDetg~i~aAAFe~a--GvRAyP~IevGdiV~ViG~V~~r------ 274 (715)
T COG1107 204 LIDDLDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGAIWAAAFEEA--GVRAYPEIEVGDIVEVIGEVTRR------ 274 (715)
T ss_pred cHHHHHh-hcCceEEEEEEEEEEEEcCCCEEEEEecCCCceehhhhccC--CcccCCCCCCCceEEEEEEEeec------
Confidence 4778876 99999999999999998887777799999999998754321 12334568999999999999875
Q ss_pred CCcCCccEEEEEeeEEEee
Q psy3762 85 TNLISGNIEILCRELKILN 103 (595)
Q Consensus 85 ~~~~~g~iEl~v~~i~vls 103 (595)
.|.+.|.+.+++.|.
T Consensus 275 ----~g~lQiE~~~me~L~ 289 (715)
T COG1107 275 ----DGRLQIEIEAMEKLT 289 (715)
T ss_pred ----CCcEEEeehhhHHhh
Confidence 456666666766554
No 119
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.39 E-value=0.025 Score=49.15 Aligned_cols=74 Identities=11% Similarity=0.197 Sum_probs=62.0
Q ss_pred CEEEEEEEEEeEec-cCCeEEEEEEeCCeeEEEEECCCcHHHHHHH--hcCCCCcEEEEEeEEEeCCCCCCCCCcCCccE
Q psy3762 16 QVISLCGWVHRKRN-HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA--KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNI 92 (595)
Q Consensus 16 ~~V~i~GwV~~~R~-~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~--~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~i 92 (595)
+.|+|.|=|.+.+. .++-+|+.|+|+...++|++-... ...+ ..++.|+-|.|.|.+.--+ +.|.+
T Consensus 22 ~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~---~~~i~~~~l~~G~~V~v~g~~~~y~--------~~G~~ 90 (99)
T PF13742_consen 22 PNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSR---ARRIRGFDLKDGDKVLVRGRVSFYE--------PRGSL 90 (99)
T ss_pred CCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHH---HhhCCCCCCCCCCEEEEEEEEEEEC--------CCcEE
Confidence 78999999999999 568999999999999999987652 2233 3689999999999998754 46889
Q ss_pred EEEEeeEE
Q psy3762 93 EILCRELK 100 (595)
Q Consensus 93 El~v~~i~ 100 (595)
.+.|++|+
T Consensus 91 sl~v~~i~ 98 (99)
T PF13742_consen 91 SLIVEDID 98 (99)
T ss_pred EEEEEEeE
Confidence 99999875
No 120
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.012 Score=65.20 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC--CC-----C-Ccc-ccccccCCCCCeeeccCChHHHHHHHHhh---
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST--PE-----G-ARD-YLVPSRINPGEFFALPQSPQLFKQLLMVA--- 205 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~--~~-----g-a~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~--- 205 (595)
-++++..|.+.+|+-|.+.|..||.=|.|.++. -| | +.+ |.+.. ..++.+.|+...|--.--++..
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~d--rg~~~l~L~PTsEe~it~~~~~~i~ 123 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKD--RGDRPLALRPTSEEVITDMFRKWIR 123 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEc--cCCceeeeCCCcHHHHHHHHHHHhh
Confidence 478889999999999999999999999999831 11 1 112 22221 2345566764444332222221
Q ss_pred ----CCCceEEEecceecCCCCC---CCCccccccccccccCCHHHHHHHHHHHHHH
Q psy3762 206 ----NFDRYYQITKCFRDEDLRS---DRQPEFTQIDCETSFMNEEEIRNLFEEMIRV 255 (595)
Q Consensus 206 ----g~~rvf~i~~~FR~E~~~~---~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~ 255 (595)
-.-++|||..+||+|.--+ -|.-||+|=|.|..+.|.+++....++++..
T Consensus 124 SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~ 180 (500)
T COG0442 124 SYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDA 180 (500)
T ss_pred hhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHH
Confidence 2358999999999997533 3677999999999999999988888887654
No 121
>KOG1035|consensus
Probab=96.37 E-value=0.0067 Score=72.08 Aligned_cols=144 Identities=24% Similarity=0.173 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeec-CCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCC---CceE
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSK-STPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANF---DRYY 211 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~-~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~---~rvf 211 (595)
...-.+|..+...+.+.|.++|++|++||-+.. ++|.-++.-.+-..++.|...-|+.---+...+.++.+. -|-|
T Consensus 929 ~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~N~~~~~Kry 1008 (1351)
T KOG1035|consen 929 EINNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSRNSVLSFKRY 1008 (1351)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeeccccchHHHHhhhchHHHHHHh
Confidence 345568899999999999999999999996654 333322111122234667766666555555555554332 4779
Q ss_pred EEecceecCCCCCCCCc-cccccccccccCC----HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHH---HHHHHhCC
Q psy3762 212 QITKCFRDEDLRSDRQP-EFTQIDCETSFMN----EEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWS---TAIKLYGS 283 (595)
Q Consensus 212 ~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~~----~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~---ea~~~~~~ 283 (595)
+|++|||-+. .+ || |++.+++-....+ .++++.++-+++..++.+- .-+-++-+. ||+-.+++
T Consensus 1009 ~i~rVyr~~~--~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~~------n~~i~lnH~~LL~Ai~~~~~ 1079 (1351)
T KOG1035|consen 1009 CISRVYRPAI--HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHEG------NCDIHLNHADLLEAILSHCG 1079 (1351)
T ss_pred hhheeecccc--cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhccC------ceeEEeChHHHHHHHHHHcC
Confidence 9999999988 33 99 9999999987654 3889999988888855421 112334444 44445655
Q ss_pred CCCcc
Q psy3762 284 DKPDM 288 (595)
Q Consensus 284 d~p~l 288 (595)
.+.|.
T Consensus 1080 i~~~~ 1084 (1351)
T KOG1035|consen 1080 IPKDQ 1084 (1351)
T ss_pred CCHHH
Confidence 55443
No 122
>KOG2783|consensus
Probab=96.35 E-value=0.0024 Score=66.97 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=32.9
Q ss_pred HHhhCCCceEEEecceecCCCCCCCCccccccccccccC
Q psy3762 202 LMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240 (595)
Q Consensus 202 ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~ 240 (595)
++..|.+.--..|-|||...++++|.|=|+|+|.-..+.
T Consensus 146 ~~~~~~~~flv~~DVyrrdeidsthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 146 LFQKGLDGFLVTGDVYRRDEIDSTHYPVFHQMEGVRLWS 184 (436)
T ss_pred HHHhcccccceeeeeeeeccccccccceeccccceeEEe
Confidence 345667888889999999999999999999999866543
No 123
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=96.34 E-value=0.0098 Score=63.84 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCCCC----CC----ccccccccCCCCCeeeccCChHHHHHHHHh----hC
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPE----GA----RDYLVPSRINPGEFFALPQSPQLFKQLLMV----AN 206 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~----ga----~~f~~~~~~~~~~~~~L~~Spql~~q~ll~----~g 206 (595)
.+....|.+.+++.|...||..|+||+|....+- |+ +-|.. .+..|+.+.|+.--....-+..+ ..
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l--~d~~g~~l~LRpD~T~pVaR~~~~~~~~~ 94 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKL--EDETGGRLGLRPDFTIPVARIHATLLAGT 94 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEE--ecCCCCeEEecccccHHHHHHHHHhcCCC
Confidence 4556788899999999999999999999985431 21 11322 23456667787544444444322 35
Q ss_pred CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHHH
Q psy3762 207 FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRVI 256 (595)
Q Consensus 207 ~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~l 256 (595)
..|+++.|++||..+...++.-||+|.-+|.-+.+- .+++.++-..++.+
T Consensus 95 P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~ 148 (390)
T COG3705 95 PLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKAL 148 (390)
T ss_pred CceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHc
Confidence 689999999999994444555599999999877652 56666666666544
No 124
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=96.14 E-value=0.026 Score=49.49 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=54.2
Q ss_pred cccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCC
Q psy3762 3 THYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKT 82 (595)
Q Consensus 3 t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 82 (595)
..+++++.....++.|+|.|.|.+.-..-. +..+|++|.|+|-++.+. +. -..+++++-|.|.|.|-+.
T Consensus 22 ~~TV~~a~~~~Dd~~V~L~G~Iv~~l~~d~---Y~F~D~TG~I~VeId~~~---w~-g~~vt~~~~Vri~GeVDk~---- 90 (103)
T PF04076_consen 22 VTTVAQAKNAKDDTPVTLEGNIVKQLGDDK---YLFRDATGEIEVEIDDDV---WR-GQTVTPDDKVRISGEVDKD---- 90 (103)
T ss_dssp ---HHHHTTS-SSEEEEEEEEEEEEEETTE---EEEEETTEEEEEE--GGG---ST-T----TTSEEEEEEEEEEE----
T ss_pred eEeHHHHhhCcCCCeEEEEEEEEEEecCCE---EEEECCCCcEEEEEChhh---cC-CcccCCCCEEEEEEEEeCC----
Confidence 346777777788999999999866543333 356999999999998762 11 2458999999999999864
Q ss_pred CCCCcCCccEEEEEeeEE
Q psy3762 83 NNTNLISGNIEILCRELK 100 (595)
Q Consensus 83 ~~~~~~~g~iEl~v~~i~ 100 (595)
-...||.|.+|+
T Consensus 91 ------~~~~~IdV~~I~ 102 (103)
T PF04076_consen 91 ------WNKTEIDVDRIE 102 (103)
T ss_dssp ------TTEEEEEEEEEE
T ss_pred ------CCceEEEEEEEE
Confidence 245788888774
No 125
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=96.08 E-value=0.024 Score=62.63 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHh-hhCCCeeccCceeecCCC---CCC-----cc-ccccccC------------------------
Q psy3762 138 NLRLRYKVTMEVRKFL-DSKKFIEIETPILSKSTP---EGA-----RD-YLVPSRI------------------------ 183 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~---~ga-----~~-f~~~~~~------------------------ 183 (595)
.+++...+.+.+.+.+ .+.||.|+.+|.|.+... +|. .+ |.+....
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L 301 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKL 301 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccc
Confidence 4566778888886655 556999999999987321 120 11 2121000
Q ss_pred ---CCCCeeeccCChHHHHHHHHhh------C-CCceEEEe-cceecCCCCC---CCCccccccccccccCCHHHHHHHH
Q psy3762 184 ---NPGEFFALPQSPQLFKQLLMVA------N-FDRYYQIT-KCFRDEDLRS---DRQPEFTQIDCETSFMNEEEIRNLF 249 (595)
Q Consensus 184 ---~~~~~~~L~~Spql~~q~ll~~------g-~~rvf~i~-~~FR~E~~~~---~r~~EFt~lE~e~~~~~~~dl~~~~ 249 (595)
.....++|+.+.+..+=.+.+. . ..++|+++ +|||.|..++ .|..||+|.|+-. +.+.++..+..
T Consensus 302 ~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~ 380 (520)
T TIGR00415 302 KNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIR 380 (520)
T ss_pred cccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHH
Confidence 0112467877777666443332 1 24789955 7999998643 3667999999998 88889999888
Q ss_pred HHHHHHHH
Q psy3762 250 EEMIRVIF 257 (595)
Q Consensus 250 E~ll~~l~ 257 (595)
++++....
T Consensus 381 e~mle~~~ 388 (520)
T TIGR00415 381 DKTLELAE 388 (520)
T ss_pred HHHHHHHH
Confidence 88886543
No 126
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.029 Score=60.92 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCCC-CCCcc---ccc-cccCCCCCeeeccCChHHHHHHHHh-------hC
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP-EGARD---YLV-PSRINPGEFFALPQSPQLFKQLLMV-------AN 206 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-~ga~~---f~~-~~~~~~~~~~~L~~Spql~~q~ll~-------~g 206 (595)
.++--.+++.+=++..++||+|+.+|.|..... -|.+. |.. .+.+ .+.-+||....+..+--+.+ ..
T Consensus 174 a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v-~~~~~~LipTaEvpl~~l~~~Eil~~~~L 252 (429)
T COG0172 174 ARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKV-EDPDLYLIPTAEVPLTNLHRDEILDEEDL 252 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEe-cCCCEEEEecchhhhHHhhcccccccccC
Confidence 444456667777777899999999999987432 23222 211 1111 12236776666655544332 13
Q ss_pred CCceEEEecceecCCCC----C---CCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccH
Q psy3762 207 FDRYYQITKCFRDEDLR----S---DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEW 274 (595)
Q Consensus 207 ~~rvf~i~~~FR~E~~~----~---~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity 274 (595)
..+++-.++|||.|... + -|.++|..+|... ++..++.....|+|+...-+-+.. +..||..+.+
T Consensus 253 P~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ae~il~~--LeLPyRvv~l 324 (429)
T COG0172 253 PIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNAEEVLQE--LELPYRVVNL 324 (429)
T ss_pred CeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHHHHHHHH--hCCCceEeee
Confidence 45788899999999754 2 3777999999864 666666666666666544322222 2246666554
No 127
>KOG2324|consensus
Probab=96.01 E-value=0.025 Score=59.12 Aligned_cols=119 Identities=24% Similarity=0.218 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecC-----CC----CCCccccccccCCCCCeeeccCChHHHHHHHHhhCC--
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKS-----TP----EGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANF-- 207 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~-----~~----~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~-- 207 (595)
+|.-.++.+.++.=|++-|=.+|.-|+|++. +. .|..-|. ..+..|+.|.|...-|=-.-.+|+.-.
T Consensus 52 ~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~r--l~Dr~gkq~cL~pThEE~iT~lmat~~~l 129 (457)
T KOG2324|consen 52 LRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFR--LHDRKGKQMCLTPTHEEDITALMATYIPL 129 (457)
T ss_pred HHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheE--eeccCCCEeccCCchHHHHHHHHHhcCcc
Confidence 5556789999999999999999999999872 11 1221122 223456777787666555555555322
Q ss_pred ------CceEEEecceecCCC---CCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHH
Q psy3762 208 ------DRYYQITKCFRDEDL---RSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKT 260 (595)
Q Consensus 208 ------~rvf~i~~~FR~E~~---~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~ 260 (595)
-+|||||+=||+|-. +--|-.||.|=|+|.-..|.+..|+. ..++.....++
T Consensus 130 sykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qT-y~~v~~aY~~i 190 (457)
T KOG2324|consen 130 SYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQT-YQLVDQAYDRI 190 (457)
T ss_pred ccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHH-HHHHHHHHHHH
Confidence 389999999999953 33466699999999644445555543 33344433333
No 128
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=95.98 E-value=0.04 Score=60.76 Aligned_cols=87 Identities=18% Similarity=0.323 Sum_probs=66.4
Q ss_pred ccccccccccCCCEEEEEEEEEeEecc----C-CeEEEEEEeCCeeEEEEECCCcHHHHHHH-hcCCCCcEEEEEeEEEe
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRNH----G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIA-KIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~~----g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~-~~l~~es~V~V~G~v~~ 77 (595)
..+++|.....|+.|+|.|.|.++|.. | .++|+.|.|.+|.+.+++-++ .++.. ..|..+.+|.|+|++..
T Consensus 269 ~~~~~l~~~~~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~---~y~~~~~~l~~~~~v~v~G~v~~ 345 (449)
T PRK07373 269 INLSELEEQKEKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPK---SYERISELLQVDARLIIWGKVDR 345 (449)
T ss_pred cCHHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH---HHHHHHHHhccCCEEEEEEEEEe
Confidence 455666533457899999999998864 4 499999999999999999865 45444 44899999999999975
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEee
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKILN 103 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vls 103 (595)
+ .+++.+.++++.-+.
T Consensus 346 ~----------~~~~~liv~~i~~l~ 361 (449)
T PRK07373 346 R----------DDQVQLIVEDAEPIE 361 (449)
T ss_pred c----------CCeEEEEEeEeecHh
Confidence 3 245778888876543
No 129
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=95.86 E-value=0.1 Score=41.07 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=52.3
Q ss_pred EEEEEEEeEeccC---CeEEEEEEeCC-eeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEE
Q psy3762 19 SLCGWVHRKRNHG---GIIFIDLRDYT-GLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEI 94 (595)
Q Consensus 19 ~i~GwV~~~R~~g---~l~Fi~LrD~~-g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl 94 (595)
++.|.|.+++... ..+++.|.|++ +.+.+++-.+.. ......+..|+.|.|.|++... .+...+
T Consensus 1 ~v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~~--~~~~~~~~~g~~v~v~g~v~~~----------~~~~~l 68 (75)
T cd03524 1 TIVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGELA--EELENLLKEGQVVYIKGKVKKF----------RGRLQL 68 (75)
T ss_pred CeEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchHH--HHHHhhccCCCEEEEEEEEEec----------CCeEEE
Confidence 3678888887764 78999999999 999999886532 2233568999999999999753 245677
Q ss_pred EEeeE
Q psy3762 95 LCREL 99 (595)
Q Consensus 95 ~v~~i 99 (595)
.++++
T Consensus 69 ~~~~~ 73 (75)
T cd03524 69 IVESI 73 (75)
T ss_pred Eeeee
Confidence 77654
No 130
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=95.84 E-value=0.051 Score=46.55 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=56.8
Q ss_pred EEEEEEEeEec--cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEE
Q psy3762 19 SLCGWVHRKRN--HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILC 96 (595)
Q Consensus 19 ~i~GwV~~~R~--~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v 96 (595)
+|.|.|.+.+. .|+=+|+.|.|.++.+.+++-+...........+..||-|.|.|.+..- + .|.+
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y------------~-ql~v 68 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPG------------T-TLNL 68 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCcEEEEEEECcccccccccCCCCCCCEEEEEEEEecC------------C-EEEE
Confidence 68999998765 4677889999999999998754421122345679999999999998652 1 6999
Q ss_pred eeEEEeecC
Q psy3762 97 RELKILNSS 105 (595)
Q Consensus 97 ~~i~vls~~ 105 (595)
+++++++..
T Consensus 69 e~l~~~glg 77 (91)
T cd04482 69 EKLRVIRLA 77 (91)
T ss_pred EEEEECCCc
Confidence 999988754
No 131
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=95.74 E-value=0.0099 Score=66.23 Aligned_cols=119 Identities=15% Similarity=0.078 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHH-hhhCCCeeccCceeecCC---CCCC----c-c-ccccc-cC----------------------
Q psy3762 137 KNLRLRYKVTMEVRKF-LDSKKFIEIETPILSKST---PEGA----R-D-YLVPS-RI---------------------- 183 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~f-f~~~gF~EV~TPiL~~~~---~~ga----~-~-f~~~~-~~---------------------- 183 (595)
.-.+++..+.+.+++. +.+.||.||.||.|.+.. ..|. . . |.+.. ..
T Consensus 221 ~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~ 300 (517)
T PRK00960 221 PMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEK 300 (517)
T ss_pred hHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccc
Confidence 3466778888888877 466699999999998732 1120 0 0 11110 00
Q ss_pred ----CCCCeeeccCChHHHHHHHHhh------C-CCceEE-EecceecCCCC---CCCCccccccccccccCCHHHHHHH
Q psy3762 184 ----NPGEFFALPQSPQLFKQLLMVA------N-FDRYYQ-ITKCFRDEDLR---SDRQPEFTQIDCETSFMNEEEIRNL 248 (595)
Q Consensus 184 ----~~~~~~~L~~Spql~~q~ll~~------g-~~rvf~-i~~~FR~E~~~---~~r~~EFt~lE~e~~~~~~~dl~~~ 248 (595)
-....|.|+.+...+.=.+.+. . .-|+|+ .|+|||.|... -.|-.||+|.|.. .+++.+++.+.
T Consensus 301 ~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee 379 (517)
T PRK00960 301 LKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEI 379 (517)
T ss_pred cccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHH
Confidence 0011233433332222121121 1 237899 55999999532 2366699999999 68999999999
Q ss_pred HHHHHHHH
Q psy3762 249 FEEMIRVI 256 (595)
Q Consensus 249 ~E~ll~~l 256 (595)
.++++.+.
T Consensus 380 ~e~ll~~~ 387 (517)
T PRK00960 380 RDELLKYA 387 (517)
T ss_pred HHHHHHHH
Confidence 99988544
No 132
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.65 E-value=0.087 Score=43.00 Aligned_cols=71 Identities=28% Similarity=0.572 Sum_probs=51.8
Q ss_pred EEEEEEeEec----cC-CeEEEEEEeCCeeEEEEECCCcHHHH-HHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEE
Q psy3762 20 LCGWVHRKRN----HG-GIIFIDLRDYTGLVQIVFDPNDIKIY-KIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIE 93 (595)
Q Consensus 20 i~GwV~~~R~----~g-~l~Fi~LrD~~g~lQvv~~~~~~~~~-~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iE 93 (595)
+.|.|.+++. .| ..+++.|.|++|.+.+++-.+ .+ +....+..|..|.|.|++... .+.++
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~---~~~~~~~~l~~g~~v~v~G~v~~~----------~~~~~ 68 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPE---TYEKYRDLLKEDALLLVEGKVERR----------DGGLR 68 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHH---HHHHHHHHhcCCCEEEEEEEEEec----------CCceE
Confidence 5566655432 34 479999999999999998753 22 234568999999999999753 35688
Q ss_pred EEEeeEEEee
Q psy3762 94 ILCRELKILN 103 (595)
Q Consensus 94 l~v~~i~vls 103 (595)
+.++++..+.
T Consensus 69 l~~~~i~~~~ 78 (84)
T cd04485 69 LIAERIEDLE 78 (84)
T ss_pred EEeeccccHH
Confidence 8888776554
No 133
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=95.41 E-value=0.082 Score=50.71 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=57.1
Q ss_pred ccCCCEEEEEEEEEeEec-c-CCeEEEEEEeCCeeEEEEECCCcHHHHHHH---hcCCCCcEEEEEeEEEeCCCCCCCCC
Q psy3762 12 KLLDQVISLCGWVHRKRN-H-GGIIFIDLRDYTGLVQIVFDPNDIKIYKIA---KIIRNEFCLQIIGKVCSRPNKTNNTN 86 (595)
Q Consensus 12 ~~~g~~V~i~GwV~~~R~-~-g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~---~~l~~es~V~V~G~v~~~~~~~~~~~ 86 (595)
-.+.+.|++.|-|.+.+. . +++.++.|.|++|++-+++.....+..... --+..|.+|+|+|.+..=
T Consensus 48 G~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~y-------- 119 (204)
T COG4085 48 GRLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEY-------- 119 (204)
T ss_pred ceeeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEe--------
Confidence 356788999999999983 3 589999999999999999887654333211 124689999999998763
Q ss_pred cCCccEEEEEee
Q psy3762 87 LISGNIEILCRE 98 (595)
Q Consensus 87 ~~~g~iEl~v~~ 98 (595)
.|..|+.+.+
T Consensus 120 --rG~~eVkvnq 129 (204)
T COG4085 120 --RGSSEVKVNQ 129 (204)
T ss_pred --CCCceeeccC
Confidence 4555665544
No 134
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=95.35 E-value=0.094 Score=47.52 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=58.3
Q ss_pred cccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNN 84 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~ 84 (595)
+++++.....+..|++.|.|.+.-..-. +..+|++|.|+|-++.+. + .-..+++++-|.|.|.|-+.
T Consensus 47 tV~~a~~~~Ddt~V~L~G~Iv~~l~~d~---Y~F~D~TG~I~VeId~~~---w-~G~~v~p~d~V~I~GeVDk~------ 113 (126)
T TIGR00156 47 TVDFAKSMHDGASVTLRGNIISHIGDDR---YVFRDKSGEINVVIPAAV---W-NGREVQPKDMVNISGSLDKK------ 113 (126)
T ss_pred eHHHHhhCCCCCEEEEEEEEEEEeCCce---EEEECCCCCEEEEECHHH---c-CCCcCCCCCEEEEEEEECCC------
Confidence 4566666678999999999976654333 457999999999998652 2 12458899999999999753
Q ss_pred CCcCCccEEEEEeeEE
Q psy3762 85 TNLISGNIEILCRELK 100 (595)
Q Consensus 85 ~~~~~g~iEl~v~~i~ 100 (595)
-+..||.|.+|+
T Consensus 114 ----~~~~~IdV~~I~ 125 (126)
T TIGR00156 114 ----SAPAEVDVTHIQ 125 (126)
T ss_pred ----CCCeEEEEEEEE
Confidence 234678887775
No 135
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=95.11 E-value=0.082 Score=53.93 Aligned_cols=75 Identities=9% Similarity=0.153 Sum_probs=55.4
Q ss_pred CEEEEEEEEEeEecc----CCeEEEEEEeCCe--eEEEEECCCcH-HHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcC
Q psy3762 16 QVISLCGWVHRKRNH----GGIIFIDLRDYTG--LVQIVFDPNDI-KIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLI 88 (595)
Q Consensus 16 ~~V~i~GwV~~~R~~----g~l~Fi~LrD~~g--~lQvv~~~~~~-~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~ 88 (595)
+.|+|.|.|..+... .+.+|+.|-|+|| .+.|++..+.. .+.-.+..+ .|++|.|+|++.
T Consensus 67 ~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vs------------ 133 (256)
T PF10451_consen 67 RWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVS------------ 133 (256)
T ss_dssp -EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEE------------
T ss_pred EEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEc------------
Confidence 458999999999866 6789999999999 89999885521 011123445 999999999997
Q ss_pred CccEEEEEeeEEEee
Q psy3762 89 SGNIEILCRELKILN 103 (595)
Q Consensus 89 ~g~iEl~v~~i~vls 103 (595)
.+..||+++.+.++.
T Consensus 134 r~~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 134 RNERQLDVERIELVR 148 (256)
T ss_dssp SSSEEEEEEEEEEET
T ss_pred cCcEEEEEEEEEccC
Confidence 246889999998775
No 136
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=95.05 E-value=0.41 Score=39.19 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=48.8
Q ss_pred cC-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeec
Q psy3762 30 HG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 30 ~g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~ 104 (595)
.| .++++.|.|++|.+.+++-.+.. .....+..|.+|.|.|.+... .+..++.+.++..+..
T Consensus 16 ~g~~~~~~~l~D~tg~i~~~~f~~~~---~~~~~l~~g~~v~v~G~v~~~----------~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 16 NGKPYLALTLQDKTGEIEAKLWDASE---EDEEKFKPGDIVHVKGRVEEY----------RGRLQLKIQRIRLVTE 78 (83)
T ss_pred CCCcEEEEEEEcCCCeEEEEEcCCCh---hhHhhCCCCCEEEEEEEEEEe----------CCceeEEEEEEEECCc
Confidence 35 58999999999999999976543 235679999999999999752 3467888888876654
No 137
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=95.00 E-value=0.11 Score=63.15 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=66.6
Q ss_pred cccccccccCCCEEEEEEEEEeEecc---CCeEEEEEEeCCeeEEEEECCCcHHHHHHH-hcCCCCcEEEEEeEEEeCCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRNH---GGIIFIDLRDYTGLVQIVFDPNDIKIYKIA-KIIRNEFCLQIIGKVCSRPN 80 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~~---g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~-~~l~~es~V~V~G~v~~~~~ 80 (595)
.+++|.....|..|+|+|+|..++.. ++++|+.|.|.+|.+.+++-++ .++.. ..|..|.++.|+|++..+
T Consensus 943 ~~~~l~~~~~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~---~~~~~~~~l~~~~~~~v~g~v~~~-- 1017 (1046)
T PRK05672 943 SAAELLDVEDGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPG---LWERQRREALGARLLLVRGRVQNA-- 1017 (1046)
T ss_pred CHHHHhhccCCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHH---HHHHHHHHhccCCEEEEEEEEEec--
Confidence 44456544467889999999987764 2499999999999999999876 44443 448999999999999753
Q ss_pred CCCCCCcCCccEEEEEeeEEEeec
Q psy3762 81 KTNNTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 81 ~~~~~~~~~g~iEl~v~~i~vls~ 104 (595)
.+.+.+.++++.-+..
T Consensus 1018 --------~~~~~~~~~~i~~~~~ 1033 (1046)
T PRK05672 1018 --------EGVRHLVADRLEDLSP 1033 (1046)
T ss_pred --------CCeEEEEEeeeechHH
Confidence 2457788888866544
No 138
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=95.00 E-value=0.31 Score=40.56 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=46.1
Q ss_pred EEEEEEEEeEecc--CCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 18 ISLCGWVHRKRNH--GGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 18 V~i~GwV~~~R~~--g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
|.++|-|.++|.. |+- |+.|-|.+|.+.+++-++.-+.++....|..+.+|.|+|.+..
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCEEEEEEeCchhhhhhhhhhccCCCEEEEEEEEec
Confidence 6789999888732 456 9999999999999998774321144456899999999999943
No 139
>PRK10053 hypothetical protein; Provisional
Probab=94.90 E-value=0.14 Score=46.78 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=58.6
Q ss_pred cccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNN 84 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~ 84 (595)
++.+......+..|++.|.|.+.=..-. +..+|++|.|+|-++.+. + .-..+++++-|.+.|.|-+.
T Consensus 51 tV~~a~~~~Dd~~V~L~G~Iv~~lg~d~---Y~F~D~tG~I~VeID~~~---w-~G~~v~p~~kV~I~GevDk~------ 117 (130)
T PRK10053 51 TVEQAKTMHDGATVSLRGNLIDHKGDDR---YVFRDKSGEINVIIPAAV---F-DGREVQPDQMININGSLDKK------ 117 (130)
T ss_pred EHHHhhcCcCCCeEEEEEEEEEEeCCce---EEEECCCCcEEEEeCHHH---c-CCCcCCCCCEEEEEEEECCC------
Confidence 5667767778999999999965433223 356999999999998652 2 12468999999999999753
Q ss_pred CCcCCccEEEEEeeEE
Q psy3762 85 TNLISGNIEILCRELK 100 (595)
Q Consensus 85 ~~~~~g~iEl~v~~i~ 100 (595)
-...||.|++|+
T Consensus 118 ----~~~~~IdV~~i~ 129 (130)
T PRK10053 118 ----SAPPVVRVTHLQ 129 (130)
T ss_pred ----CCCeEEEEEEEe
Confidence 234788888775
No 140
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=94.80 E-value=0.13 Score=62.94 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=66.3
Q ss_pred ccccccccccCCCEEEEEEEEEeEecc----C-CeEEEEEEeCCeeEEEEECCCcHHHHHHHh-cCCCCcEEEEEeEEEe
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRNH----G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAK-IIRNEFCLQIIGKVCS 77 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~~----g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~-~l~~es~V~V~G~v~~ 77 (595)
..+++|.....|++|+|.|.|.++|.. | .++|+.|.|.+|.+.+++-++ .++..+ .|..|.+|.|+|+|..
T Consensus 989 ~~~~~l~~~~~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~---~y~~~~~~l~~~~~~~v~g~v~~ 1065 (1170)
T PRK07374 989 ISLSSLEEQPDKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPK---SYERLSDHLMTDTRLLVWAKVDR 1065 (1170)
T ss_pred cCHHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH---HHHHHHHHhccCCEEEEEEEEEe
Confidence 345666433457899999999998764 4 499999999999999999865 454443 4899999999999975
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEee
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKILN 103 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vls 103 (595)
+ .+...+.++++.-+.
T Consensus 1066 ~----------~~~~~~~~~~i~~l~ 1081 (1170)
T PRK07374 1066 R----------DDRVQLIIDDCREID 1081 (1170)
T ss_pred c----------CCeEEEEEeeeecHh
Confidence 3 245678888876554
No 141
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=94.71 E-value=0.26 Score=43.19 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=58.9
Q ss_pred ccccccccCCCEEEEEEEEEe---Eec------cCCeEEEEEEeC-CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEE
Q psy3762 6 CGNITEKLLDQVISLCGWVHR---KRN------HGGIIFIDLRDY-TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKV 75 (595)
Q Consensus 6 ~~~l~~~~~g~~V~i~GwV~~---~R~------~g~l~Fi~LrD~-~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v 75 (595)
|++|+... ..++|+|||.+ +|. .|++.-++|.|. ++.+++++-.+. .-++...|..|+++.++|--
T Consensus 2 I~~L~p~~--~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~~~I~~t~~~~~--~~~f~~~l~eG~vy~i~~~~ 77 (104)
T cd04474 2 ISSLNPYQ--NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGGEIRATFFNDA--VDKFYDLLEVGKVYYISKGS 77 (104)
T ss_pred hhHccCCC--CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCCCEEEEEEehHH--HHHhhcccccccEEEEeccE
Confidence 56776543 35999999975 332 267888999999 789999998753 23455679999999999644
Q ss_pred EeCCCCCCCCCcCCccEEEEEee
Q psy3762 76 CSRPNKTNNTNLISGNIEILCRE 98 (595)
Q Consensus 76 ~~~~~~~~~~~~~~g~iEl~v~~ 98 (595)
++...+. .+.....+|+...+
T Consensus 78 V~~a~~~--y~~~~~~yeI~f~~ 98 (104)
T cd04474 78 VKVANKK--FNTLKNDYEITFNR 98 (104)
T ss_pred Eeecccc--CCCCCCcEEEEECC
Confidence 4332222 22234577776654
No 142
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=94.71 E-value=0.15 Score=45.46 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=59.4
Q ss_pred cccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNN 84 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~ 84 (595)
++.+....+.+..|++.|-|.+.-..- . +..||++|.|+|.++...- .-..+++.+-|.+.|.|-+.
T Consensus 47 TV~~Ak~~~Dda~V~l~GnIv~qi~~D--~-y~FrD~sGeI~VeIdd~~w----~g~tv~P~dkV~I~GevDk~------ 113 (128)
T COG3111 47 TVDQAKTLHDDAWVSLEGNIVRQIGDD--R-YVFRDASGEINVDIDDKVW----NGQTVTPKDKVRIQGEVDKD------ 113 (128)
T ss_pred EHHHhhccccCCeEEEEeeEEEeeCCc--e-EEEEcCCccEEEEeccccc----CCcccCcccEEEEEeEEcCC------
Confidence 455555667899999999986543322 3 3579999999999987631 12568999999999999753
Q ss_pred CCcCCccEEEEEeeEEEe
Q psy3762 85 TNLISGNIEILCRELKIL 102 (595)
Q Consensus 85 ~~~~~g~iEl~v~~i~vl 102 (595)
-...||.|..|+.+
T Consensus 114 ----~~~~eIdV~~I~k~ 127 (128)
T COG3111 114 ----WNSVEIDVKHIEKL 127 (128)
T ss_pred ----CccceeEhhheEec
Confidence 23578888888765
No 143
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=94.52 E-value=0.19 Score=61.51 Aligned_cols=80 Identities=19% Similarity=0.390 Sum_probs=62.4
Q ss_pred cCCCEEEEEEEEEeEecc----C-CeEEEEEEeCCeeEEEEECCCcHHHHHHH-hcCCCCcEEEEEeEEEeCCCCCCCCC
Q psy3762 13 LLDQVISLCGWVHRKRNH----G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIA-KIIRNEFCLQIIGKVCSRPNKTNNTN 86 (595)
Q Consensus 13 ~~g~~V~i~GwV~~~R~~----g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~-~~l~~es~V~V~G~v~~~~~~~~~~~ 86 (595)
..|+.|+|.|.|..+|.. | .++|+.|.|.+|.+++++-++ .++.. ..|..|.+|.|+|++..+.
T Consensus 989 ~~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~---~~~~~~~~l~~~~~~~v~g~v~~~~------- 1058 (1151)
T PRK06826 989 KDGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPK---VYEKYRSLLNEDNIVLIKGRVSLRE------- 1058 (1151)
T ss_pred cCCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHH---HHHHHHHHhccCCEEEEEEEEEecC-------
Confidence 347889999999988863 4 399999999999999999875 34333 4589999999999997531
Q ss_pred cCCccEEEEEeeEEEeec
Q psy3762 87 LISGNIEILCRELKILNS 104 (595)
Q Consensus 87 ~~~g~iEl~v~~i~vls~ 104 (595)
.+.+.+.++++.-+..
T Consensus 1059 --~~~~~~~~~~~~~l~~ 1074 (1151)
T PRK06826 1059 --DEEPKLICEEIEPLVI 1074 (1151)
T ss_pred --CCceEEEEeeeecHhh
Confidence 2457788888866653
No 144
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=94.28 E-value=0.19 Score=61.46 Aligned_cols=90 Identities=16% Similarity=0.331 Sum_probs=68.8
Q ss_pred cccccccccccCCCEEEEEEEEEeEecc----C-CeEEEEEEeCCeeEEEEECCCcHHHHH-HHhcCCCCcEEEEEeEEE
Q psy3762 3 THYCGNITEKLLDQVISLCGWVHRKRNH----G-GIIFIDLRDYTGLVQIVFDPNDIKIYK-IAKIIRNEFCLQIIGKVC 76 (595)
Q Consensus 3 t~~~~~l~~~~~g~~V~i~GwV~~~R~~----g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~-~~~~l~~es~V~V~G~v~ 76 (595)
+.++.+|.....|+.|++.|.|.++|.. | .++|+.|.|.+|.+.+++-++ .++ ....|..|++|.|+|+|.
T Consensus 965 ~~~~~~l~~~~~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~---~ye~~~~~L~~g~iV~V~GkVe 1041 (1135)
T PRK05673 965 DTRLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSE---ALEKYRDLLEEDRIVVVKGQVS 1041 (1135)
T ss_pred CcCHHHHhccccCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHH---HHHHHHHHhccCCEEEEEEEEE
Confidence 3456666543458899999999998874 4 499999999999999999865 333 334589999999999997
Q ss_pred eCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 77 SRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 77 ~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+ .+++.+.++++.-+...
T Consensus 1042 ~~----------~~~~qlii~~I~~L~~~ 1060 (1135)
T PRK05673 1042 FD----------DGGLRLTAREVMDLEEA 1060 (1135)
T ss_pred ec----------CCeEEEEEeecccHHHH
Confidence 53 24577888888766543
No 145
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.19 E-value=0.19 Score=57.24 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCC--C--C---C-ccccccccCCCCCeeeccCC--hHHHHHHHHhhCC-----
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTP--E--G---A-RDYLVPSRINPGEFFALPQS--PQLFKQLLMVANF----- 207 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--~--g---a-~~f~~~~~~~~~~~~~L~~S--pql~~q~ll~~g~----- 207 (595)
..+.+.+|++|...||.|+-|..+++... . + . ......... ..+.-.|++| |.+.... ..+.
T Consensus 362 ~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPl-s~e~svLRtsLlpgLL~~~--~~N~~~~~~ 438 (552)
T PRK09616 362 EKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPI-SEDYTVVRTSLLPSLLEFL--SNNKHREYP 438 (552)
T ss_pred HHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCC-ccchheEeccchHHHHHHH--HhccCCCCC
Confidence 45677899999999999999999986421 0 0 0 001111111 1222345544 4443333 3222
Q ss_pred CceEEEecceecCCCCCCCCc-cccccccccccC--CHHHHHHHHHHHHHH
Q psy3762 208 DRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFM--NEEEIRNLFEEMIRV 255 (595)
Q Consensus 208 ~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~--~~~dl~~~~E~ll~~ 255 (595)
-|+||||+||+.+..+.. ++ |++++.+-+++. ++.++...+|.++..
T Consensus 439 ~~lFEiG~Vf~~~~~~~~-~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 439 QKIFEIGDVVLIDESTET-GTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred eeEEEeeEEEecCCcccc-CcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 379999999998763333 55 999999888774 678999988888864
No 146
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=94.06 E-value=0.23 Score=60.46 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=66.2
Q ss_pred ccccccccccCCCEEEEEEEEEeEecc----C-CeEEEEEEeCCeeEEEEECCCcHHHHHHH-hcCCCCcEEEEEeEEEe
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRNH----G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIA-KIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~~----g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~-~~l~~es~V~V~G~v~~ 77 (595)
..+++|.. ..|+.|+|.|.|..+|.. | .++|+.|.|.+|.+.+++-++ .++.. ..|..+.+|.|+|+|..
T Consensus 933 ~~~~~l~~-~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~---~y~~~~~~l~~~~~~~v~G~v~~ 1008 (1107)
T PRK06920 933 PSLAQAMR-HKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPE---TYIHFSDKLQEGAIVLVDGTIEL 1008 (1107)
T ss_pred cCHHHHhh-cCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHH---HHHHHHHHhccCCEEEEEEEEEe
Confidence 45666643 457789999999998653 4 599999999999999999875 44443 45899999999999975
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEeec
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vls~ 104 (595)
+ .+...+.++++.-+..
T Consensus 1009 ~----------~~~~~~~~~~i~~l~~ 1025 (1107)
T PRK06920 1009 R----------NHKLQWIVNGLYPLEE 1025 (1107)
T ss_pred c----------CCcEEEEEeecccHHH
Confidence 3 2456788888765543
No 147
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.88 E-value=0.088 Score=59.66 Aligned_cols=121 Identities=24% Similarity=0.281 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCCcc-cccc-ccC-CCCCeeeccC--ChH---HHHHHHHh--h
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGARD-YLVP-SRI-NPGEFFALPQ--SPQ---LFKQLLMV--A 205 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga~~-f~~~-~~~-~~~~~~~L~~--Spq---l~~q~ll~--~ 205 (595)
..+|+.+.+.+|.-..+.||.||.||.|.... ..|.-+ |... +.. ..++.|.|.. .|. .++..+-. .
T Consensus 220 ~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~ 299 (589)
T COG0441 220 ATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRE 299 (589)
T ss_pred ccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceec
Confidence 46899999999999999999999999998632 223211 1110 000 1112233332 221 22222100 1
Q ss_pred CCCceEEEecceecCCCCCCCC----ccccccccccccCCHHHHHHHHHHHHHHHHHHH
Q psy3762 206 NFDRYYQITKCFRDEDLRSDRQ----PEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKT 260 (595)
Q Consensus 206 g~~rvf~i~~~FR~E~~~~~r~----~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~ 260 (595)
-.-|++++|.|||.|.+++.|= -+|||=|.-. |+..+.+.+.+.+.+..+..-.
T Consensus 300 LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 300 LPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVY 357 (589)
T ss_pred cchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHH
Confidence 1248999999999999887654 3999999975 7778888888887777665543
No 148
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=93.76 E-value=0.41 Score=46.48 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=58.3
Q ss_pred EEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEE
Q psy3762 17 VISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILC 96 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v 96 (595)
.|++.|||.++..+-.-+|+.|.||+|.|.|..=+.+....+..+.+..+-.|.|.|.++.= .|...+..
T Consensus 68 ~V~fVGvvrni~~~ttn~~~~iEDGTG~Ievr~W~~~~~~~e~~~d~~~~~yvkV~G~lk~F----------~GK~~I~~ 137 (258)
T COG5235 68 NVQFVGVVRNIKTSTTNSMFVIEDGTGSIEVRFWPGNSYEEEQCKDLEEQNYVKVNGSLKTF----------NGKRSISA 137 (258)
T ss_pred eEEEEEEEEeeeecccceEEEEecCCceEEEEecCCCchHHHhccccccccEEEEecceeee----------CCeeEEeh
Confidence 38899999999999877889999999999999765543344556667788899999999753 45666666
Q ss_pred eeEEEe
Q psy3762 97 RELKIL 102 (595)
Q Consensus 97 ~~i~vl 102 (595)
.-|.-+
T Consensus 138 ~~i~~I 143 (258)
T COG5235 138 SHISAI 143 (258)
T ss_pred hheeec
Confidence 554433
No 149
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=92.94 E-value=0.8 Score=39.95 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=50.6
Q ss_pred cccCCCEEEEEEEEEeEeccCCeEEEEEEeCC-eeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCC
Q psy3762 11 EKLLDQVISLCGWVHRKRNHGGIIFIDLRDYT-GLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLIS 89 (595)
Q Consensus 11 ~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~-g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~ 89 (595)
.+++|+.|++.|+|.+.+.. . +.+.+.. +.++|.++... .+..+-.|.|.|+|..
T Consensus 11 ~~f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg~~v~v~l~~~~--------~~~~~~~vEViG~V~~------------ 66 (101)
T cd04479 11 SQFVGKTVRIVGKVEKVDGD---S-LTLISSDGVNVTVELNRPL--------DLPISGYVEVIGKVSP------------ 66 (101)
T ss_pred HhhCCCEEEEEEEEEEecCC---e-EEEEcCCCCEEEEEeCCCC--------CcccCCEEEEEEEECC------------
Confidence 46899999999999999754 2 3455544 48999988652 4677889999999953
Q ss_pred ccEEEEEeeEEEeec
Q psy3762 90 GNIEILCRELKILNS 104 (595)
Q Consensus 90 g~iEl~v~~i~vls~ 104 (595)
...|.+.+..-++.
T Consensus 67 -~~~I~~~~~~~~g~ 80 (101)
T cd04479 67 -DLTIRVLSYIDFGD 80 (101)
T ss_pred -CCeEEEEEEEECCC
Confidence 24567776665554
No 150
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=92.82 E-value=0.2 Score=55.31 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhh--CCCeeccCceeec
Q psy3762 139 LRLRYKVTMEVRKFLDS--KKFIEIETPILSK 168 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~--~gF~EV~TPiL~~ 168 (595)
..++..|.++-|++|.. .+++||+||+|.+
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 45678999999999965 5899999999987
No 151
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=92.07 E-value=0.31 Score=47.67 Aligned_cols=108 Identities=20% Similarity=0.311 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhCCCeeccCceeecCC-CC----CC-ccccccccCCCCCeeeccCCh--HHHHHHH--HhhC--CCceE
Q psy3762 144 KVTMEVRKFLDSKKFIEIETPILSKST-PE----GA-RDYLVPSRINPGEFFALPQSP--QLFKQLL--MVAN--FDRYY 211 (595)
Q Consensus 144 ~i~~~iR~ff~~~gF~EV~TPiL~~~~-~~----ga-~~f~~~~~~~~~~~~~L~~Sp--ql~~q~l--l~~g--~~rvf 211 (595)
.+.+.+|++|...||.|+-|..+++.. .. +. ....+.... ..+.-.|++|- .+..... ...+ .-|+|
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPi-s~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lF 82 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPL-SEEYSVLRTSLLPGLLDALARNLNRKNKPLRLF 82 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCC-chhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEE
Confidence 466788999999999999999997641 10 00 001000000 01111233332 2222111 0112 23899
Q ss_pred EEecceecCCCCCCCCc-ccccccccccc-------------CCHHHHHHHHHHHHHHH
Q psy3762 212 QITKCFRDEDLRSDRQP-EFTQIDCETSF-------------MNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 212 ~i~~~FR~E~~~~~r~~-EFt~lE~e~~~-------------~~~~dl~~~~E~ll~~l 256 (595)
|||+||..+.. ++ |.+.+=+-+++ +++.|+...+|.++..+
T Consensus 83 EiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 83 EIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred EeEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
Confidence 99999976531 33 55555443333 36677888888777544
No 152
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=92.00 E-value=0.7 Score=55.89 Aligned_cols=82 Identities=12% Similarity=0.277 Sum_probs=60.7
Q ss_pred cccccccccCCCEEEEEEEEEeEec-----cC-CeEEEEEEeCCeeEEEEECCCcHHHHHHH-hcCCCCcEEEEEeEEEe
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRN-----HG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIA-KIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~-----~g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~-~~l~~es~V~V~G~v~~ 77 (595)
.+++|. .++.+.+.|+|..+|. .| .++|+.|.|.+|.+++++-++ .++.. ..|..+.+|.|+|+|..
T Consensus 877 ~~~~l~---~~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~---~y~~~~~~l~~~~~~~v~G~v~~ 950 (1034)
T PRK07279 877 PISQLV---KNSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPE---TYRQYKDELKEGKFYYLKGKIQE 950 (1034)
T ss_pred cHHHHh---cCCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHH---HHHHHHHHhccCCEEEEEEEEEe
Confidence 344553 3667889999987653 34 599999999999999999865 34333 45899999999999976
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEe
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKIL 102 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vl 102 (595)
+ .+++.+.++++.-+
T Consensus 951 ~----------~~~~~l~~~~i~~l 965 (1034)
T PRK07279 951 R----------DGRLQMVLQQIQEA 965 (1034)
T ss_pred c----------CCeeEEEEeeeecc
Confidence 3 24567778777543
No 153
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=91.42 E-value=0.99 Score=39.86 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=38.6
Q ss_pred cccCCCEEEEEEEEEeEeccCCeEEEEEEe-CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 11 EKLLDQVISLCGWVHRKRNHGGIIFIDLRD-YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 11 ~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD-~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
.+++|+.|+|.|+|.+....|+.+ .++. +++.++|....+. .+..+.+|.|.|+|...
T Consensus 14 ~~~~gk~VrivGkv~~~~~~g~~~--~l~~~d~~~V~v~l~~~~--------~~~~~~~vEviG~V~~~ 72 (109)
T PF08661_consen 14 SQFVGKTVRIVGKVESVDPDGGSA--TLSTSDGGQVTVSLNPPS--------DEELSKYVEVIGKVNDD 72 (109)
T ss_dssp GGGTTSEEEEEEEEEEE-TTSSEE--EEE-TTS-EEEEEESS----------SS---SEEEEEEEE-TT
T ss_pred HhhCCCeEEEEEEEeeEcCCCCEE--EEEcCCCCEEEEEeCCCC--------CCCCCCEEEEEEEEcCC
Confidence 468999999999999999777644 3443 4458888887652 24568899999999753
No 154
>PRK15491 replication factor A; Provisional
Probab=88.79 E-value=2.1 Score=46.35 Aligned_cols=90 Identities=20% Similarity=0.143 Sum_probs=64.6
Q ss_pred ccccccccccCCCEEEEEEEEEeE-------ecc---CCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEe
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRK-------RNH---GGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIG 73 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~-------R~~---g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G 73 (595)
+.|++|++. .+.|+|.|+|.++ |.. |++.=+.|-|.+|.+++++=.+..+.+. ...|..|++|.|.|
T Consensus 58 ~kI~dL~~~--~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~a~~~~-~~~le~G~v~~I~~ 134 (374)
T PRK15491 58 TKIADINES--SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDLADLIK-TGDIEVGKSLNISG 134 (374)
T ss_pred ccHHHCCCC--CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECchhhhhc-cCCcCCCCEEEEee
Confidence 346666542 3679999999877 322 4677789999999999998765432211 13589999999999
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
.++.. -+.+||.+.+-..+.+|.
T Consensus 135 ~~~~~----------y~g~Ei~i~~~~~i~~~~ 157 (374)
T PRK15491 135 YAKEG----------YSGIEVNIGRYGGISESD 157 (374)
T ss_pred eeccC----------cccEEEEeCCCceeeecc
Confidence 86543 234899999888888875
No 155
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=88.62 E-value=5.7 Score=31.32 Aligned_cols=55 Identities=24% Similarity=0.214 Sum_probs=39.5
Q ss_pred EEEEEEeEecc----CCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 20 LCGWVHRKRNH----GGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 20 i~GwV~~~R~~----g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
+.|.|.+.+.. ++..-+.+.|+++.+.++.-...+ + ..+.++.|+.+.|.|++..
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~~~--~-~~~~~~~G~~~~v~Gkv~~ 60 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNFQP--Y-LKKQLPPGTRVRVSGKVKR 60 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECCCH--H-HHhcCCCCCEEEEEEEEee
Confidence 55666554321 256778999999999999765222 1 2466999999999999976
No 156
>KOG3108|consensus
Probab=87.96 E-value=2.8 Score=42.92 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=57.8
Q ss_pred EEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEE
Q psy3762 17 VISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILC 96 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v 96 (595)
.|++.|||.++-....-++++|-|+++.+-+..=............|..|..|.|.|.++. ..|...|.+
T Consensus 70 ~v~~VGivr~~e~~~t~i~y~I~D~tg~id~r~W~~~~~~~~e~~~l~~~~yVkv~G~Lk~----------f~Gk~sl~~ 139 (265)
T KOG3108|consen 70 AVSIVGIVRNIEKSATNITYEIEDGTGQIDVRQWFHDNAESEEMPALETGTYVKVYGHLKP----------FQGKKSLQV 139 (265)
T ss_pred EEEEEEEEEeceecCcceEEEEecCcccEEEEEeccccchhhhCcccccCcEEEeeecccC----------CCCceeEEE
Confidence 4899999999999986677899999999777643322222233457999999999999975 356677888
Q ss_pred eeEEEee
Q psy3762 97 RELKILN 103 (595)
Q Consensus 97 ~~i~vls 103 (595)
.+|..+-
T Consensus 140 fkI~pv~ 146 (265)
T KOG3108|consen 140 FKIRPVE 146 (265)
T ss_pred Eeeeeee
Confidence 8776544
No 157
>PRK12366 replication factor A; Reviewed
Probab=87.69 E-value=2.5 Score=48.97 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=65.3
Q ss_pred cccccccccccCCCEEEEEEEEEeEec---------cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEe
Q psy3762 3 THYCGNITEKLLDQVISLCGWVHRKRN---------HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIG 73 (595)
Q Consensus 3 t~~~~~l~~~~~g~~V~i~GwV~~~R~---------~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G 73 (595)
...|++|+....|+.++|.|||.++-. .|++.-+.|.|.+|.+++++=.+..+ ....|..|+++.|++
T Consensus 279 ~~pI~~L~~~~~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG~IR~t~w~~~~d---~~~~l~~G~vy~is~ 355 (637)
T PRK12366 279 IVNIEELTEFEDGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTGRVRVSFWGEKAK---ILENLKEGDAVKIEN 355 (637)
T ss_pred ceeHHHCCcccCCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCCeEEEEEeCchhh---hhcccCCCCEEEEec
Confidence 346778876436789999999987742 36788899999999999998765432 234578999999996
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEeeEEEee
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCRELKILN 103 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~~i~vls 103 (595)
-..+.-. .....+++||.+..-..+.
T Consensus 356 ~~vk~y~----~~~~~~~~El~~~~~s~I~ 381 (637)
T PRK12366 356 CKVRTYY----DNEGEKRVDLNAGYSSEII 381 (637)
T ss_pred CEEeecc----ccCCCcCEEEEcCCceEEE
Confidence 5544211 0112457899886554443
No 158
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=87.66 E-value=6.4 Score=41.53 Aligned_cols=86 Identities=8% Similarity=0.128 Sum_probs=62.9
Q ss_pred cccccccccCCCEEEEEEEEEeEec----cCC-eEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRN----HGG-IIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~----~g~-l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
.|+++. .|+.|....-|.++.. .|+ -..+.|.|.||.|.+.+=.... +....+..|++|.|+|.+..
T Consensus 4 ~i~~l~---~g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~~~---~~~~~~~~g~vv~v~G~v~~-- 75 (314)
T PRK13480 4 GIEELE---VGEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDVSP---EDEATYVPETIVHVKGDIIN-- 75 (314)
T ss_pred hHhhcC---CCCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCCCh---hhHhhcCCCCEEEEEEEEEE--
Confidence 455564 3666666666655543 353 7778999999999999855432 23567899999999999975
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
-.|.+.+.+.+++++++..
T Consensus 76 --------y~g~~Ql~i~~i~~~~~~e 94 (314)
T PRK13480 76 --------YRGRKQLKVNQIRLATEED 94 (314)
T ss_pred --------ECCcceEEEEEeEECCCCC
Confidence 3567889999999988753
No 159
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.63 E-value=4.4 Score=46.74 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=70.1
Q ss_pred cccccccccccCCCEEEEEEEEEeE---ec------cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE-
Q psy3762 3 THYCGNITEKLLDQVISLCGWVHRK---RN------HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII- 72 (595)
Q Consensus 3 t~~~~~l~~~~~g~~V~i~GwV~~~---R~------~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~- 72 (595)
-+.|++|+... ...+|+|||.++ |. .|++.-++|.|.+|.|++.+-.+.. -++...|..|+++.|+
T Consensus 180 ~~pI~~L~py~--~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg~Irat~f~~~~--dkf~~~l~eG~VY~Is~ 255 (608)
T TIGR00617 180 VMPIASLSPYQ--NKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESGEIRATAFNEQA--DKFYDIIQEGKVYYISK 255 (608)
T ss_pred eEEHHHCCCCC--CceEEEEEEEeccccceecCCCCCceeeEEEEecCCCeEEEEECchHH--HHHhhhcccCCEEEECc
Confidence 46788887643 349999999763 32 2678889999988999999987743 2445679999999997
Q ss_pred eEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 73 GKVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 73 G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
|.|+... +. .+.....+||...+-+++-+|.
T Consensus 256 ~~Vk~an-~~--y~~~~~~yei~f~~~T~I~~~~ 286 (608)
T TIGR00617 256 GSLKPAN-KQ--FTNLGNDYEMTLDRDTVIEECE 286 (608)
T ss_pred eEEEEcc-cc--ccCCCCCEEEEECCCeEEEECC
Confidence 5665432 11 1223467999998888888875
No 160
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=86.14 E-value=4.7 Score=34.18 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=46.0
Q ss_pred EEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 19 SLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 19 ~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
.+.|.|.+++..+.=+|+.|+|.+|.+++.+.++..+ +.-..|..|+++-..-.-.-+|
T Consensus 6 ~l~v~Iks~~~~~~D~~v~l~DpTG~i~~tiH~~v~~--~y~~~l~~GavLlLk~V~Vf~p 64 (86)
T PF15072_consen 6 CLVVIIKSIVPSSEDAFVVLKDPTGEIRGTIHRKVLE--EYGDELSPGAVLLLKDVTVFSP 64 (86)
T ss_pred EEEEEEEEeeccCCCeEEEEECCCCcEEEEEeHHHHh--hcCCccccCEEEEEeeeeEEec
Confidence 6889999999988778999999999999999976432 2445688888887775444443
No 161
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=85.95 E-value=10 Score=34.22 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=53.8
Q ss_pred CEEEEEEEEEe---Eec--cC-CeEEEEEE-------eCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCC
Q psy3762 16 QVISLCGWVHR---KRN--HG-GIIFIDLR-------DYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKT 82 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~--~g-~l~Fi~Lr-------D~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 82 (595)
..|.|.|+|.+ +|. .| .++-+.|- +.+..+.|++=....+ ...+.|+.|+.|.|+|.++.+.-..
T Consensus 4 N~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~l~~~~~~d 81 (121)
T PRK07459 4 NSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKTAQ--VAADYVKKGSLIGITGSLKFDRWTD 81 (121)
T ss_pred cEEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHHHH--HHHHHcCCCCEEEEEEEEEecceEc
Confidence 35888888866 343 24 23323332 2234577777654322 2345699999999999998763321
Q ss_pred CCCCcCCccEEEEEeeEEEeecC
Q psy3762 83 NNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 83 ~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+...+....||.+++|+.|++.
T Consensus 82 ~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 82 RNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred CCCCeEEEEEEEEEeEEEECcCC
Confidence 11011233689999999999854
No 162
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=85.80 E-value=2.2 Score=39.21 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=38.6
Q ss_pred ccCCCEEEEEEEEEeEecc-CCeEEEEEEeCCe--eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 12 KLLDQVISLCGWVHRKRNH-GGIIFIDLRDYTG--LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 12 ~~~g~~V~i~GwV~~~R~~-g~l~Fi~LrD~~g--~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
.+.|+.|.|.|.|.+++.. ++-.++...+..+ .++|.++.+.. ......+|+.|+.|.|+|.+..
T Consensus 64 kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~l~~G~~Vti~G~~~g 131 (144)
T PF12869_consen 64 KYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQE-KRASVAKLKKGQKVTIKGICTG 131 (144)
T ss_dssp HHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGG-GHHHHHH--TTSEEEEEEE---
T ss_pred hcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchh-hhhhHhcCCCCCEEEEEEEEEe
Confidence 4679999999999999873 3445555555444 58888876641 1223456999999999999865
No 163
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=85.68 E-value=6.1 Score=36.00 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=58.1
Q ss_pred ccccccccccCCCEEEEEEEEEeEec-------cC--CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE-e
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRN-------HG--GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII-G 73 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~-------~g--~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~-G 73 (595)
..|++|... ...|.+.|.|.++.. .| .+.-+.|.|.+|.+.+.+=.+. +..+..|++|.|. |
T Consensus 5 ~kI~dL~~g--~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~------a~~l~~GdvV~I~na 76 (129)
T PRK06461 5 TKIKDLKPG--MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQ------AGSLKEGEVVEIENA 76 (129)
T ss_pred eEHHHcCCC--CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCc------cccCCCCCEEEEECc
Confidence 346777542 257899999984321 22 3777899999999998875542 3468999999999 5
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEee---EEEeec
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCRE---LKILNS 104 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~~---i~vls~ 104 (595)
.+.. -.|.++|.+.+ +..+..
T Consensus 77 ~v~~----------f~G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 77 WTTL----------YRGKVQLNVGKYGSISESDD 100 (129)
T ss_pred EEee----------eCCEEEEEECCCEEEEECCc
Confidence 5543 35778999984 665554
No 164
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=85.66 E-value=6.1 Score=32.63 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=42.0
Q ss_pred CCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE-eEEEeCCCCCCCCCcCCccEEEEEeeEE
Q psy3762 31 GGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII-GKVCSRPNKTNNTNLISGNIEILCRELK 100 (595)
Q Consensus 31 g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~-G~v~~~~~~~~~~~~~~g~iEl~v~~i~ 100 (595)
+++.=+.|.|.+|.+.+++=.+.. ...+..|++|.++ |.+.. -.|.++|.+.+..
T Consensus 22 ~~~~~~~l~D~TG~i~~~~W~~~~-----~~~~~~G~vv~i~~~~v~~----------~~g~~ql~i~~~~ 77 (82)
T cd04491 22 GKVQSGLVGDETGTIRFTLWDEKA-----ADDLEPGDVVRIENAYVRE----------FNGRLELSVGKNS 77 (82)
T ss_pred eEEEEEEEECCCCEEEEEEECchh-----cccCCCCCEEEEEeEEEEe----------cCCcEEEEeCCce
Confidence 467788999999999998765421 4668999999999 77754 2477888876543
No 165
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=84.95 E-value=4.3 Score=44.14 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=58.0
Q ss_pred CCEEEEEEEEEe--EeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccE
Q psy3762 15 DQVISLCGWVHR--KRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNI 92 (595)
Q Consensus 15 g~~V~i~GwV~~--~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~i 92 (595)
...++|.|.|.. +..-|+..|+.+.|+.|.|-+++-....+.-..+.+|.+||.|.+.|.++.. .
T Consensus 266 ~~~~~v~g~v~~~p~~ieGghv~v~i~d~~G~I~~~A~eptk~fr~~a~~L~pGD~i~~~G~~~~~------------~- 332 (421)
T COG1571 266 YSKYRVVGRVEAEPRAIEGGHVVVEITDGEGEIGAVAFEPTKEFRELARKLIPGDEITVYGSVKPG------------T- 332 (421)
T ss_pred ccceEEEEEEecccEEeeCCEEEEEecCCCceEEEEEecccccchHHHHhcCCCCEEEEecCcccc------------c-
Confidence 456888998854 4446999999999999999888765444455678899999999999998642 2
Q ss_pred EEEEeeEEEeecC
Q psy3762 93 EILCRELKILNSS 105 (595)
Q Consensus 93 El~v~~i~vls~~ 105 (595)
|.+++++|+.-+
T Consensus 333 -~n~ek~~v~~l~ 344 (421)
T COG1571 333 -LNLEKFQVLKLA 344 (421)
T ss_pred -eeEEEEEEEEee
Confidence 666666665543
No 166
>PLN02734 glycyl-tRNA synthetase
Probab=84.57 E-value=0.5 Score=54.43 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=40.4
Q ss_pred ceEEEecceecCCC---CCCCCccccccccccccCCHHH----HHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHH
Q psy3762 209 RYYQITKCFRDEDL---RSDRQPEFTQIDCETSFMNEEE----IRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKL 280 (595)
Q Consensus 209 rvf~i~~~FR~E~~---~~~r~~EFt~lE~e~~~~~~~d----l~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~ 280 (595)
.+.|||++||||=+ .--|-.||+|.|+|. |++-++ -...+.++.-.++..-....-..+ .+||..||++.
T Consensus 277 ~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~-Fv~P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~-~~~t~~eAv~~ 353 (684)
T PLN02734 277 AAAQIGQAFRNEISPRQGLLRVREFTLAEIEH-FVDPEDKSHPKFSEVADLEFLLFPREEQLGGQKA-KPMRLGEAVSK 353 (684)
T ss_pred eeeeccHhhhcccCcccceeeechhhhhhhhe-ecCcccccccchhhhhhhhhhcccHhhhhccCCc-ccccHHHHHHc
Confidence 48999999999932 233667999999996 666432 233333333323221110000122 37888888863
No 167
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.61 E-value=1.3 Score=48.64 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCCCCccceeccHHHHHHHHcCCC
Q psy3762 521 FGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSK 553 (595)
Q Consensus 521 ~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~ 553 (595)
|..+++.+.--.-|.-|||+|+|||++++-...
T Consensus 295 YD~Lv~~~gG~~~pavGFaiGveRl~~~l~~~~ 327 (429)
T COG0124 295 YDGLVEEFGGKPTPAVGFAIGVERLILALEEEG 327 (429)
T ss_pred chHHHHHhCCCCCCceeEehHHHHHHHHHHHcC
Confidence 444555554335688899999999999887663
No 168
>PRK07211 replication factor A; Reviewed
Probab=83.47 E-value=7.5 Score=43.33 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=58.6
Q ss_pred ccccccccCCCEEEEEEEEEeEec-----------cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeE
Q psy3762 6 CGNITEKLLDQVISLCGWVHRKRN-----------HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGK 74 (595)
Q Consensus 6 ~~~l~~~~~g~~V~i~GwV~~~R~-----------~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~ 74 (595)
|++|+.. ...|+|.|||.++-. .|++.=+.|-|.+|.|++++=.+.. -+....|..|+++.|.|.
T Consensus 56 I~dL~pg--~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG~Ir~TlW~d~a--d~~~~~Le~GdV~~I~~~ 131 (485)
T PRK07211 56 IADIEPG--MDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETGSVRVAFWDEQA--VAAEEELEVGQVLRIKGR 131 (485)
T ss_pred HhhCCCC--CCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCCeEEEEEechHh--HhhhcccCCCCEEEEece
Confidence 5566532 256999999987644 3689999999999999999876532 234567999999999998
Q ss_pred EEeCCCCCCCCCcCCccEEEEEeeE
Q psy3762 75 VCSRPNKTNNTNLISGNIEILCREL 99 (595)
Q Consensus 75 v~~~~~~~~~~~~~~g~iEl~v~~i 99 (595)
++.. -+.+||.+..+
T Consensus 132 ~~~~----------ys~~El~i~~v 146 (485)
T PRK07211 132 PKDG----------YNGLEVSVDKV 146 (485)
T ss_pred Eecc----------ccceEEEEeeE
Confidence 7532 23468888854
No 169
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=82.79 E-value=6.1 Score=43.60 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=62.5
Q ss_pred CCEEEEEEEEEeEecc-CCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEE
Q psy3762 15 DQVISLCGWVHRKRNH-GGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIE 93 (595)
Q Consensus 15 g~~V~i~GwV~~~R~~-g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iE 93 (595)
-..|+|.|=|.+.+.+ ++=+|+.|.|....+-||+-.... ....-.+..|+-|.|.|.|..-+ +.|.+.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~--~~~~~~~~~G~~v~v~g~~~~y~--------~~g~~q 92 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSA--RRLKFKPEEGMKVLVRGKVSLYE--------PRGDYQ 92 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChh--hcCCCCCCCCCEEEEEEEEEEEC--------CCCCEE
Confidence 4579999999999876 578999999999999999876532 11123478999999999998643 468899
Q ss_pred EEEeeEEEee
Q psy3762 94 ILCRELKILN 103 (595)
Q Consensus 94 l~v~~i~vls 103 (595)
|.|+++...+
T Consensus 93 l~v~~i~~~g 102 (438)
T PRK00286 93 LIVEEIEPAG 102 (438)
T ss_pred EEEEEeeeCC
Confidence 9999988644
No 170
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=82.15 E-value=18 Score=34.70 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=54.4
Q ss_pred CEEEEEEEEEe---Eecc--C-CeE-EEEEEe--------C-----CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEE
Q psy3762 16 QVISLCGWVHR---KRNH--G-GII-FIDLRD--------Y-----TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKV 75 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~-Fi~LrD--------~-----~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v 75 (595)
.+|.|.|||.+ +|.. | .++ |-.-.+ | +..+.|++-.... -...+.|+.||.|.|+|.+
T Consensus 5 N~V~LiGrLg~DPElR~t~nG~~va~fsVAvn~~~~d~~~Ge~~e~t~w~~Vv~fgk~A--E~v~~~LkKGs~V~VeGrL 82 (168)
T PRK06863 5 NKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQA--EVAGEYLRKGSQVYVEGRL 82 (168)
T ss_pred cEEEEEEEcCCCCEEEEcCCCCEEEEEEEEecCcccccCCCcccccceEEEEEEEhHHH--HHHHHHCCCCCEEEEEEEE
Confidence 46888999866 5553 3 232 322221 1 1247777665432 2345679999999999999
Q ss_pred EeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 76 CSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 76 ~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
..+.-...+. .....+||.+++|++|+..
T Consensus 83 ~~r~w~DkdG-~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 83 KTRKWQDQNG-QDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EeCCccCCCC-CEEEEEEEEEeEEEECCCC
Confidence 8874322221 1234689999999998854
No 171
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=81.78 E-value=4.2 Score=44.84 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=60.1
Q ss_pred EEEEEEEEEeEecc-CCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEE
Q psy3762 17 VISLCGWVHRKRNH-GGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEIL 95 (595)
Q Consensus 17 ~V~i~GwV~~~R~~-g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~ 95 (595)
.|+|.|=|.+.+.+ ++=+|+.|.|....+.||+-.... -...-.+..|+-|.|.|.|..-+ +.|.+.|.
T Consensus 19 ~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~--~~l~f~~~~G~~V~v~g~v~~y~--------~~G~~ql~ 88 (432)
T TIGR00237 19 QVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNN--NRLKFRPQNGQQVLVRGGISVYE--------PRGDYQII 88 (432)
T ss_pred cEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChh--hCCCCCCCCCCEEEEEEEEEEEC--------CCCcEEEE
Confidence 79999999999865 468999999999999999876532 11113468999999999997643 46889999
Q ss_pred EeeEEEe
Q psy3762 96 CRELKIL 102 (595)
Q Consensus 96 v~~i~vl 102 (595)
|++++.-
T Consensus 89 v~~i~~~ 95 (432)
T TIGR00237 89 CFEMQPA 95 (432)
T ss_pred EEEeccC
Confidence 9998853
No 172
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=81.64 E-value=5.2 Score=43.79 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=60.6
Q ss_pred CEEEEEEEEEeEeccC-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEE
Q psy3762 16 QVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEI 94 (595)
Q Consensus 16 ~~V~i~GwV~~~R~~g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl 94 (595)
..|+|.|-|.+.+.+. +-.|+.|.|....++|++-+... ...--.+..|+-|.|+|++..=+ ..|.+.|
T Consensus 24 ~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~--~~l~f~p~eG~~V~v~G~is~Y~--------~rG~YQi 93 (440)
T COG1570 24 GQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNN--RRLKFRPEEGMQVLVRGKISLYE--------PRGDYQI 93 (440)
T ss_pred CeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCcc--cccCCCccCCCEEEEEEEEEEEc--------CCCceEE
Confidence 4599999999999664 48999999999999999876532 12223478899999999997654 4688999
Q ss_pred EEeeEEE
Q psy3762 95 LCRELKI 101 (595)
Q Consensus 95 ~v~~i~v 101 (595)
.+++++.
T Consensus 94 ~~~~~~p 100 (440)
T COG1570 94 VAESMEP 100 (440)
T ss_pred EEecCCc
Confidence 9998874
No 173
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=81.38 E-value=23 Score=29.55 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=48.6
Q ss_pred EEEEEEEEeEe--c--cCC-eEEEEEEeCCeeEEEEECC-CcHHHHHHHhcCC-CCcEEEEEeEEEeCCCCCCCCCcCCc
Q psy3762 18 ISLCGWVHRKR--N--HGG-IIFIDLRDYTGLVQIVFDP-NDIKIYKIAKIIR-NEFCLQIIGKVCSRPNKTNNTNLISG 90 (595)
Q Consensus 18 V~i~GwV~~~R--~--~g~-l~Fi~LrD~~g~lQvv~~~-~~~~~~~~~~~l~-~es~V~V~G~v~~~~~~~~~~~~~~g 90 (595)
|+|.|-|-.+- . .|+ +.-+.|.|.+..+-|-.-. +. .+....|+ .|+.|.|.|.+.... -.+
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~~~---~~~~~~ik~~G~~v~v~G~v~~D~--------f~~ 70 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLRKD---EKDKEELKSKGDWVRVRGKVQYDT--------FSK 70 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEeccCC---hhHHhhcccCCCEEEEEEEEEEcc--------CCC
Confidence 77889886542 2 354 5558999999876555332 22 22346688 999999999997642 246
Q ss_pred cEEEEEeeEE
Q psy3762 91 NIEILCRELK 100 (595)
Q Consensus 91 ~iEl~v~~i~ 100 (595)
++.+.+..+.
T Consensus 71 e~~~~i~~i~ 80 (82)
T cd04484 71 ELVLMINDIE 80 (82)
T ss_pred ceEEEeeeEE
Confidence 7777777654
No 174
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=80.94 E-value=4.5 Score=48.93 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=51.3
Q ss_pred CCCEEEEEEEEEeEecc---C-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 14 LDQVISLCGWVHRKRNH---G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 14 ~g~~V~i~GwV~~~R~~---g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
.++.|+|.|.|.++|.. | .++|+.|.|.+|.+.+++-++ .++..+.+..++++.|+|+...+
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~~e~~~F~~---~~~~~~~l~~~~~~~~~~~~~~~ 961 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVEITIFVNDN---DYLLFETLKKGDIYEFLISKSKN 961 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCcEEEEEcHH---HHHHHHHhhcCCEEEEEEEEcCC
Confidence 46789999999887653 5 599999999999999999865 55556668899999999988654
No 175
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=80.83 E-value=13 Score=43.41 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=51.0
Q ss_pred ccccccCCCEEEEEEEEEeEecc--C-CeEEEEEEeCCeeEEEEECC-CcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 8 NITEKLLDQVISLCGWVHRKRNH--G-GIIFIDLRDYTGLVQIVFDP-NDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 8 ~l~~~~~g~~V~i~GwV~~~R~~--g-~l~Fi~LrD~~g~lQvv~~~-~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
.+.+-..|+.|+|.|.|.+.+.. + ++.-+.+.|++|.++++.-. +.+ + ..+.++.|+.+.|.|+|..
T Consensus 52 ~i~~l~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n~~--~-~~~~l~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 52 PIAELRPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFNQP--Y-LKKQLKVGKRVAVYGKVKR 122 (681)
T ss_pred CHHHCCCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccCcH--H-HHhhCCCCCEEEEEEEEEe
Confidence 34444569999999999887543 3 57788999999999999763 222 1 1367999999999999976
No 176
>KOG2509|consensus
Probab=80.52 E-value=1.2 Score=48.24 Aligned_cols=119 Identities=17% Similarity=0.181 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----CCCCcccc--ccccCCCCCeeeccCChHHHHHHHHh------
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----PEGARDYL--VPSRINPGEFFALPQSPQLFKQLLMV------ 204 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~~ga~~f~--~~~~~~~~~~~~L~~Spql~~q~ll~------ 204 (595)
....+-..+++..-+|+.++||+-+.||.+.... |.=-..|- ..+....+.--||.-..|..+..+-+
T Consensus 183 ~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~ 262 (455)
T KOG2509|consen 183 AGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEE 262 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhccccccc
Confidence 3466778899999999999999999999887632 11000010 00001122223454444444433221
Q ss_pred -hCCCceEEEecceecCCC----CCC---CCccccccccccccCCH-------HHHHHHHHHHHHHH
Q psy3762 205 -ANFDRYYQITKCFRDEDL----RSD---RQPEFTQIDCETSFMNE-------EEIRNLFEEMIRVI 256 (595)
Q Consensus 205 -~g~~rvf~i~~~FR~E~~----~~~---r~~EFt~lE~e~~~~~~-------~dl~~~~E~ll~~l 256 (595)
.-..|+-.+++|||.|-. ++. |-+||+-+|.-. ..+- ++++...|++++.+
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it~Pe~S~~~~eEmi~~~eef~qsL 328 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-ITGPEDSWEMLEEMINNQEEFYQSL 328 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ecCcchhHHHHHHHHHHHHHHHHHh
Confidence 112477889999999963 222 556999999853 2333 45555555544443
No 177
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=80.45 E-value=1.3 Score=49.11 Aligned_cols=33 Identities=33% Similarity=0.354 Sum_probs=25.2
Q ss_pred ceEEEecceecCCCC---CCCCccccccccccccCCH
Q psy3762 209 RYYQITKCFRDEDLR---SDRQPEFTQIDCETSFMNE 242 (595)
Q Consensus 209 rvf~i~~~FR~E~~~---~~r~~EFt~lE~e~~~~~~ 242 (595)
-+-|||++||||=+- --|-.||+|+|+|. |++-
T Consensus 167 giaQIGk~FRNEIsPr~~l~R~REF~q~EiE~-Fv~P 202 (539)
T PRK14894 167 GIAQVGKAFRNEINPRNFLFRVREFEQMEIEY-FVMP 202 (539)
T ss_pred eEEeeeccccCccCCCCceeecccchhheEEE-EeCC
Confidence 489999999999332 22566999999996 6654
No 178
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=80.09 E-value=4.6 Score=46.01 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhhCCCeeccCceeecCC-C-C--C--Ccc-ccccccCCCCCeeeccCChHHHHHHHHhhCC-----Cc
Q psy3762 142 RYKVTMEVRKFLDSKKFIEIETPILSKST-P-E--G--ARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANF-----DR 209 (595)
Q Consensus 142 rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-~--g--a~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~-----~r 209 (595)
...+.+.+|++|...||.|+-|-.+++.. . + + ... ..+... ...++-+|++|---.+=..+..+. -|
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NP-is~e~s~lR~SLlp~LL~~~~~N~~~~~~~~ 442 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANP-KTLEYTIVRTSLLPGLLETLSENKHHELPQK 442 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCC-CchhhhHhHhhhHHHHHHHHHhcccCCCCee
Confidence 45667788999999999999999998641 1 0 0 000 000000 011222445443322222223222 27
Q ss_pred eEEEecceecCCCCCCCCcccccccccccc--CCHHHHHHHHHHHHHHH
Q psy3762 210 YYQITKCFRDEDLRSDRQPEFTQIDCETSF--MNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 210 vf~i~~~FR~E~~~~~r~~EFt~lE~e~~~--~~~~dl~~~~E~ll~~l 256 (595)
+||||+||...+.+..+..+|.++-+-+++ .++.|+...+|.++..+
T Consensus 443 lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l 491 (551)
T TIGR00471 443 IFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL 491 (551)
T ss_pred EEEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 999999996533211233355666665554 36889999999888644
No 179
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=78.40 E-value=19 Score=34.88 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=40.3
Q ss_pred eeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 43 GLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 43 g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
..+-|++=....+ ...+.|+.|+.|.|+|.+..+.-...+. .+...+||.|++|.+|++..
T Consensus 49 ~fi~v~~fg~~AE--~~~~~l~KG~~V~VeGrL~~~~y~dkdG-~~r~~~eI~a~~v~~L~~~~ 109 (182)
T PRK08486 49 CFIDIRLFGRTAE--IANQYLSKGSKVLIEGRLTFESWMDQNG-QKRSKHTITAESMQMLDSKS 109 (182)
T ss_pred eEEEEEEEhHHHH--HHHHHcCCCCEEEEEEEEEeCcEECCCC-cEEEEEEEEEeEEEECCCCC
Confidence 3466665544322 2346699999999999998764221111 12346899999999998653
No 180
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=77.65 E-value=15 Score=33.55 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=43.5
Q ss_pred cccccccc--CCCEEEEEEEEE--eEecc--C-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEE
Q psy3762 6 CGNITEKL--LDQVISLCGWVH--RKRNH--G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVC 76 (595)
Q Consensus 6 ~~~l~~~~--~g~~V~i~GwV~--~~R~~--g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~ 76 (595)
.+++.... .|+.|+|.|+|. ++... + .+.| .|.|+...+.|+.....|+ ..+.|..|.|+|++.
T Consensus 39 ~se~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~~~i~V~Y~G~~Pd------~F~eg~~VVv~G~~~ 109 (131)
T PF03100_consen 39 PSELAAEPQKVGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGGKEIPVVYTGPLPD------LFREGQGVVVEGRLG 109 (131)
T ss_dssp TTTTTTTST-TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS-EEEEEEES--CT------T--TTSEEEEEEEEC
T ss_pred HHHHhhccccCCceEEEeeEEccCCEEEcCCCCEEEE-EEEECCcEEEEEECCCCCc------cccCCCeEEEEEEEC
Confidence 45554433 689999999998 55553 3 5776 6789999999999876553 356799999999983
No 181
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=77.56 E-value=4.4 Score=40.29 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred ccceeccHHHHHHHHcCCCCcccc
Q psy3762 535 HGGIAFGLDRLITIMTGSKSIRDV 558 (595)
Q Consensus 535 h~G~glGlDRLvm~l~g~~~IRdv 558 (595)
...+.|++|+|+|+..|.++||+.
T Consensus 189 v~~~Eidl~~l~~~~~~~~~~~~~ 212 (218)
T cd00496 189 GFAFGIGLERLAMLKYGIPDIRLF 212 (218)
T ss_pred EEEEEecHHHHHHHHhCCcHHHHH
Confidence 457899999999999999999974
No 182
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=77.38 E-value=19 Score=40.28 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=77.7
Q ss_pred hcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCc-------cchhhhHHHHHHHHHhCCCCceEEEEeccccccCCC
Q psy3762 294 FTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFS-------ISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGL 366 (595)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 366 (595)
..|++++|.++...++.+.++. +|++.++.+|.-+. --|..=-++.++++.+|..|+... +.|
T Consensus 282 ~~DVTdlF~~TkSkiI~~~l~~-gG~V~A~~l~~f~GlvG~EiqpGrRlGtE~AD~ar~~GvgGlfHs---------DEL 351 (631)
T COG2511 282 VFDVTDLFANTKSKIIRSGLKK-GGKVYAVLLPGFAGLVGREIQPGRRLGTEFADYARAYGVGGLFHS---------DEL 351 (631)
T ss_pred cccHHHHhccCchHHHHHhhcc-CCeEEEEEcCCccccccccccCCcccchHHHHHHHHhCCCccccc---------ccC
Confidence 3499999999999999987764 78899988874432 113333478889999988886521 111
Q ss_pred CcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHH
Q psy3762 367 KSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSAL 411 (595)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~ 411 (595)
+...+++++.+++.+.+++..+|.+...++....+..++-++
T Consensus 352 ---P~YGIteeEV~~v~d~lga~~~Davvlva~~~~~~~~a~~~V 393 (631)
T COG2511 352 ---PGYGITEEEVEAVRDALGAGEEDAVVLVAGEEERAKRALEAV 393 (631)
T ss_pred ---ccCCCCHHHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHH
Confidence 234678899999999999999999999988877666655554
No 183
>PRK00036 primosomal replication protein N; Reviewed
Probab=77.15 E-value=7.2 Score=34.43 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=40.5
Q ss_pred eeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 43 GLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 43 g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
+.+|+++..+ ..+...+++.|+.|.|+|.+..+.. ....+=||++.|+.+.+.
T Consensus 47 ~~i~ava~G~---~a~~~~~l~~Gs~v~v~GFLa~~~~-------~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 47 LTISAVALGD---LALLLADTPLGTEMQVQGFLAPARK-------DSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEEhh---HHHHhcccCCCCEEEEEEEEEECCC-------CCCcEEEEhHHeEEcccc
Confidence 4588887764 4556678999999999999987322 345788999999988654
No 184
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=76.72 E-value=37 Score=29.96 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=39.4
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+.|++=....+ ...+.+..||.|.|+|.+..+.-...+. ......||.++++++|++.
T Consensus 48 ~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~l~~~~~~~~~G-~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 48 FINCVVWRKSAE--NVTEYCTKGSLVGITGRIHTRNYEDDQG-KRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEEehHHHH--HHHHhcCCCCEEEEEEEEEeCccCCCCC-cEEEEEEEEEEEEEECCCC
Confidence 366665544322 2346699999999999999874322211 1223689999999999854
No 185
>PRK14699 replication factor A; Provisional
Probab=76.57 E-value=11 Score=42.16 Aligned_cols=86 Identities=22% Similarity=0.176 Sum_probs=60.5
Q ss_pred cccccccccCCCEEEEEEEEEeEe-------ccC---CeEEEEEEeCCeeEEEEECCCcHHHHHHHh--cCCCCcEEEEE
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKR-------NHG---GIIFIDLRDYTGLVQIVFDPNDIKIYKIAK--IIRNEFCLQII 72 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R-------~~g---~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~--~l~~es~V~V~ 72 (595)
.|++|.. -+..|+|.|+|.++- ..| +++=+.|-|.+|++.+++=.+.. ..+. .|..||+|.|.
T Consensus 59 kI~di~~--~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~ir~tlW~~~a---~~~~~g~l~~GDvv~I~ 133 (484)
T PRK14699 59 KIENITP--ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGKIKLTLWDNMA---DLIKAGKIKAGQTLQIS 133 (484)
T ss_pred cHhHccC--CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCeEEEEEecCcc---chhhhcCCCCCCEEEEc
Confidence 3555543 236799999998883 333 57777899999999999865532 1223 59999999999
Q ss_pred eEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 73 GKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 73 G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
|.++.. .+++||.+.+.+++.++
T Consensus 134 ~~~r~~----------~~g~el~~~~~~~i~~~ 156 (484)
T PRK14699 134 GYAKQG----------YSGVEVNIGNNGVLTES 156 (484)
T ss_pred ceeccC----------CCCceEEeCCCceeecc
Confidence 975432 23478888776666665
No 186
>PRK14699 replication factor A; Provisional
Probab=76.56 E-value=14 Score=41.48 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=65.7
Q ss_pred ccccccccccCCCEEEEEEEEEeEec----------cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEe
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRN----------HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIG 73 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~----------~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G 73 (595)
+.|.+|+. -+..|+|.|+|.++-. .|++.=+.|-|++|.+.+++=.+.. +....+..|+.|.|.+
T Consensus 277 ~~I~~L~~--~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG~Ir~T~W~~~a---~~~~~i~~Gd~v~i~~ 351 (484)
T PRK14699 277 TPIEDIKA--DMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTGKIRLTLWDEKT---NFLDEIDFDETVEVLN 351 (484)
T ss_pred cCHHHcCC--CCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCCeEEEEEeCccc---ccccccCCCceEEEEe
Confidence 45666753 3578999999997632 2467778999999999999855432 3445688999999885
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
.-++.. .-.+.+||.+.+-.++.+|.
T Consensus 352 ~y~~~~-------~~~~~~eL~~~~~t~I~~~~ 377 (484)
T PRK14699 352 AYSREN-------TFSQQVELNLGARGIIQKSE 377 (484)
T ss_pred EEEEec-------cCCccEEEEecCceeEeecC
Confidence 443321 13468999999888888875
No 187
>PRK04036 DNA polymerase II small subunit; Validated
Probab=76.28 E-value=9.8 Score=42.86 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=51.7
Q ss_pred cccccccc-CCCEEEEEEEEEeEeccC-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEE
Q psy3762 6 CGNITEKL-LDQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVC 76 (595)
Q Consensus 6 ~~~l~~~~-~g~~V~i~GwV~~~R~~g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~ 76 (595)
+..|.+.. .++++.|-|-|..+|... +-..+.|-|.+|++++++.++..+..+....+-.|.+|.|.|+..
T Consensus 143 i~~l~~~~~~~~~~~viG~v~~~~~~~~g~~~~~LED~sgrv~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~ 215 (504)
T PRK04036 143 IESLKKLKRGGEEVSIIGMVSDIRSTKNGHKIVELEDTTGTFPVLIMKDREDLAELADELLLDEVIGVEGTLS 215 (504)
T ss_pred HHHHhcCccCCceEEEEEEEEEeecccCCceEEEEECCCCeEEEEeecchhhhhhhhhcccCceEEEEEEEEc
Confidence 44454444 578899999999998543 222467999999999998755323334456789999999999875
No 188
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=75.98 E-value=1.6 Score=46.25 Aligned_cols=35 Identities=26% Similarity=0.645 Sum_probs=28.1
Q ss_pred HHHhhCCCC-CccceeccHHHHHHHHcCCCCccccc
Q psy3762 525 LNSLKYGAP-PHGGIAFGLDRLITIMTGSKSIRDVI 559 (595)
Q Consensus 525 L~al~~G~P-Ph~G~glGlDRLvm~l~g~~~IRdvi 559 (595)
+.+.+||.| |---.|+|+|||.|+|.|.++||...
T Consensus 314 ~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~mv 349 (536)
T COG2024 314 IALAEYGIDYPVMNLGLGVERLAMILHGADDVRSMV 349 (536)
T ss_pred HHHHHcCCCCceeecchhHHHHHHHHhCchHHhhhh
Confidence 445567743 66789999999999999999999753
No 189
>PRK15491 replication factor A; Provisional
Probab=75.32 E-value=14 Score=39.94 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=62.8
Q ss_pred cccccccccCCCEEEEEEEEEeEec-------cC---CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEe-
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRN-------HG---GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIG- 73 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~-------~g---~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G- 73 (595)
.+++|.. -+..|.|.|+|.++-. .| ++.=+.|-|.+|.+.+++=.+..+ .+..|..|++|.+.+
T Consensus 168 ~I~dl~~--~~~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~Ir~t~W~~~a~---~~~~l~~Gd~V~i~~~ 242 (374)
T PRK15491 168 KISDIKD--GDSDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGKIRVTLWDGKTD---LADKLENGDSVEIING 242 (374)
T ss_pred cHHHcCC--CCccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCeEEEEEecchhc---ccccCCCCCEEEEEec
Confidence 4566654 2345999999988753 23 466689999999999987665322 235689999999975
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
.++.+ .-.|.+||.+.+-..+.+|.
T Consensus 243 ~~r~~--------~~~g~~El~~~~~s~I~~~~ 267 (374)
T PRK15491 243 YARTN--------NYSQEVEIQIGNHGSLRKTD 267 (374)
T ss_pred eEEEe--------ccCCCEEEEeCCCceEEECC
Confidence 46542 13578999997766677764
No 190
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=75.12 E-value=37 Score=32.68 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=40.2
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+.|++=.... -...+.|+.|+.|.|+|.++.+.-..... .+...+||.|+.|++|.+.
T Consensus 48 wi~~v~wgk~A--e~~~~~l~KG~~V~VeGrL~~r~yedkdG-~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 48 FINCVIWRKQA--ENVANYLKKGSLAGVDGRLQTRNYEGQDG-KRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEEeCcHH--HHHHHHcCCCCEEEEEEEEEeCccCCCCC-cEEEEEEEEEEEEEeCcCC
Confidence 47777665532 23456699999999999999875322211 1223689999999998754
No 191
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=75.02 E-value=30 Score=32.92 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=53.5
Q ss_pred EEEEEEEEEe---Eec--cC-CeEEEEEE------e--C---CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 17 VISLCGWVHR---KRN--HG-GIIFIDLR------D--Y---TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 17 ~V~i~GwV~~---~R~--~g-~l~Fi~Lr------D--~---~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
.|.|.|||.+ +|. .| .++-+.|- + + +..+.|++=....+. ..+.|+.|+.|.|+|.++.+.
T Consensus 4 ~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk~Ae~--~~~~l~KG~~V~VeGrl~~r~ 81 (162)
T PRK07275 4 NVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAEN--LANWAKKGALIGVTGRIQTRN 81 (162)
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcHHHHH--HHHHcCCCCEEEEEEEEEece
Confidence 5778888864 343 34 34434441 1 1 234777776654332 346699999999999998764
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
-...+. .+....||.|+++++|++.
T Consensus 82 y~dkdG-~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 82 YENQQG-QRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EECCCC-CEEEEEEEEEeEEEECCCC
Confidence 221111 1234689999999998754
No 192
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=74.64 E-value=3.1 Score=45.25 Aligned_cols=42 Identities=31% Similarity=0.631 Sum_probs=31.1
Q ss_pred eeeEEecCE--EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCC-CCCccceeccHHHHHHH
Q psy3762 480 AYDLIINGW--EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYG-APPHGGIAFGLDRLITI 548 (595)
Q Consensus 480 ~fDl~~~G~--Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G-~PPh~G~glGlDRLvm~ 548 (595)
-|+.+.+|. -|+||+. |..+++.+ | -.|..|||+|+|||+.+
T Consensus 275 vFe~~~~~~~~~i~~GGR-------------------------YD~L~~~f--g~~~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 275 VFEGYVDGVGNPIASGGR-------------------------YDDLLGRF--GRARPATGFSLDLDRLLEL 319 (391)
T ss_pred EEEEEECCCCCcccCCcc-------------------------hhhHHHHc--CCCCCCceEEeeHHHHHhh
Confidence 477777764 4888876 44555555 4 44789999999999984
No 193
>PRK08402 replication factor A; Reviewed
Probab=74.04 E-value=21 Score=38.31 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=56.2
Q ss_pred ccccccccCCCEEEEEEEEEeE---ec----cC---CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE-eE
Q psy3762 6 CGNITEKLLDQVISLCGWVHRK---RN----HG---GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII-GK 74 (595)
Q Consensus 6 ~~~l~~~~~g~~V~i~GwV~~~---R~----~g---~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~-G~ 74 (595)
|++|... .+.|++.|+|.++ |. .| ++.=+.|-|.+|++.+++=.+.. -+.+..+..|++|.|. +.
T Consensus 65 I~dl~~g--~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~ir~TlW~~~a--~~~~~~l~~Gdvi~I~~a~ 140 (355)
T PRK08402 65 ISDLVPG--MRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGRARVVLWDAKV--AKYYNKINVGDVIKVIDAQ 140 (355)
T ss_pred HHHccCC--CceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCeEEEEEechhh--hhhcccCCCCCEEEEECCE
Confidence 5555432 2679999999887 31 23 35558999999999888755432 1224569999999998 55
Q ss_pred EEeCCCCCCCCCcCCccEEEEEeeEEEe
Q psy3762 75 VCSRPNKTNNTNLISGNIEILCRELKIL 102 (595)
Q Consensus 75 v~~~~~~~~~~~~~~g~iEl~v~~i~vl 102 (595)
|+.. ..|.+||.+-+-..+
T Consensus 141 V~e~---------~~G~~eLsvg~~s~i 159 (355)
T PRK08402 141 VRES---------LSGLPELHINFRARI 159 (355)
T ss_pred Eeec---------CCCcEEEEECCCceE
Confidence 5532 246679988655433
No 194
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=73.97 E-value=28 Score=28.78 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=40.8
Q ss_pred EEEEEEEeEeccC-CeEEEEEEeCCe-----eEE-EEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCcc
Q psy3762 19 SLCGWVHRKRNHG-GIIFIDLRDYTG-----LVQ-IVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGN 91 (595)
Q Consensus 19 ~i~GwV~~~R~~g-~l~Fi~LrD~~g-----~lQ-vv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~ 91 (595)
+|.|.|......+ .-.|. |+|... +-. +.+.... ...+..||.|.|+|+|.+- .|.
T Consensus 1 ~v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~~------~~~~~~Gd~V~vtG~v~ey----------~g~ 63 (78)
T cd04486 1 TVEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTGS------GADVAVGDLVRVTGTVTEY----------YGL 63 (78)
T ss_pred CeEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecCC------CCCCCCCCEEEEEEEEEee----------CCe
Confidence 3678888887753 23454 676521 111 2221110 2568999999999999874 455
Q ss_pred EEEEEee-EEEee
Q psy3762 92 IEILCRE-LKILN 103 (595)
Q Consensus 92 iEl~v~~-i~vls 103 (595)
.+|...+ +++++
T Consensus 64 tql~~~~~~~~~~ 76 (78)
T cd04486 64 TQLTAVSAIEVLG 76 (78)
T ss_pred EEEccCCceEEec
Confidence 6666644 56554
No 195
>PRK07211 replication factor A; Reviewed
Probab=73.91 E-value=18 Score=40.30 Aligned_cols=88 Identities=17% Similarity=0.222 Sum_probs=63.1
Q ss_pred ccccccccccCCCEEEEEEEEEeEec----------cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE-
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRN----------HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII- 72 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~----------~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~- 72 (595)
+.|++|+. -+..|.|.|+|.++-. .|++.=+.|-|.+|.|.+++=.+..+ .+..|..|++|.|.
T Consensus 162 ~~I~dL~~--~~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~IR~TlW~d~Ad---~~~~le~G~Vv~I~~ 236 (485)
T PRK07211 162 YTVEDLSL--GLSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGRVRVTLWDDRAD---LAEELDAGESVEIVD 236 (485)
T ss_pred ccHHHcCC--CCCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCeEEEEEechhhh---hhccCCCCCEEEEEe
Confidence 34566653 2466999999984422 24677799999999999998665432 23569999999997
Q ss_pred eEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 73 GKVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 73 G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
|.|+.. .+.+||.+.+-..+.++.
T Consensus 237 a~Vre~----------~g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 237 GYVRER----------DGSLELHVGDRGAVEEVD 260 (485)
T ss_pred eEEEec----------CCcEEEEECCCceEEECC
Confidence 555542 478999998777777664
No 196
>PRK12366 replication factor A; Reviewed
Probab=73.44 E-value=14 Score=42.97 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=57.0
Q ss_pred ccccccccccCCCEEEEEEEEEeE---e----c---cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEe
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRK---R----N---HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIG 73 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~---R----~---~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G 73 (595)
..|++|+... ..|+|.|+|.++ | . -|++.=+.|-|.+|.+.+++=.+..+ .+..|..|+++.|.|
T Consensus 64 ~~I~dl~p~~--~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG~Ir~t~W~~~~~---~~~~le~G~v~~i~~ 138 (637)
T PRK12366 64 FKISDIEEGQ--INVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGTIRLTLWNDNAK---LLKGLKEGDVIKIEN 138 (637)
T ss_pred eEHHHCcCCC--cceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCCEEEEEEEchhhh---hhccCCCCCEEEEec
Confidence 3466675422 459999999766 3 2 25688899999999999998765432 356899999999998
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEe
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCR 97 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~ 97 (595)
...+. -.+.+||.+.
T Consensus 139 ~~v~~---------~~~~~el~~~ 153 (637)
T PRK12366 139 ARSRK---------WNNDVELNSG 153 (637)
T ss_pred cEecc---------cCCceEEEcC
Confidence 65542 2456777653
No 197
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=70.51 E-value=55 Score=31.10 Aligned_cols=59 Identities=7% Similarity=0.043 Sum_probs=38.9
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+.|++=.+.. -...+.|+.|+.|.|+|.++.+.-...+. .+...+||.|++|++|+-.
T Consensus 44 wi~v~awg~~A--e~v~~yL~KG~~V~VeGrL~~~~y~dkdG-~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 44 WCRCNIWGNRY--DKMLPYLKKGSGVIVAGEMSPESYVDKDG-SPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEEhHHH--HHHHHhCCCCCEEEEEEEEEeCccCCCCC-CEEEEEEEEEeEEEECcCC
Confidence 46666654322 22345699999999999998764221111 1234689999999999754
No 198
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=70.35 E-value=54 Score=31.27 Aligned_cols=86 Identities=19% Similarity=0.131 Sum_probs=51.7
Q ss_pred EEEEEEEEEe---Eecc--C-CeEEEEEE------eC-------CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 17 VISLCGWVHR---KRNH--G-GIIFIDLR------DY-------TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 17 ~V~i~GwV~~---~R~~--g-~l~Fi~Lr------D~-------~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
+|.|.|+|-+ +|.. | .++-+.|- |. +..+.|++-....+ .....|+.|+.|.|+|.+..
T Consensus 7 kv~LiGrLg~DPelr~t~~G~~va~fsVA~~~~~k~~~G~~~e~t~w~~Vv~fgk~Ae--~v~~~L~KGs~V~VeGrL~~ 84 (164)
T PRK08763 7 KVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDREGNTQERTEWHRVKFFGKLGE--IAGEYLRKGSQCYIEGSIRY 84 (164)
T ss_pred EEEEEEEecCCCeEEEcCCCCeEEEEEEEeccceecCCCCeeccceEEEEEEehHHHH--HHHHhcCCCCEEEEEEEEEe
Confidence 5888888866 4442 3 33333332 11 11266665543222 23456999999999999987
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
+.-...+. .+...+||.|++|.+|+..
T Consensus 85 ~~y~dkdG-~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 85 DKFTGQDG-QERYVTEIVADEMQMLGGR 111 (164)
T ss_pred ceeECCCC-CEEEEEEEEEeEEEECCCC
Confidence 63211111 1234689999999999864
No 199
>PRK07218 replication factor A; Provisional
Probab=70.08 E-value=32 Score=37.83 Aligned_cols=78 Identities=15% Similarity=0.000 Sum_probs=55.7
Q ss_pred cccccccccCCCEEEEEEEEEeEe-----c---cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEE
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKR-----N---HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVC 76 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R-----~---~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~ 76 (595)
.|++|+.. ++.|.|.|+|-++- . .|.+.=+.|-|.+|++.+++=.+. .|..|++|.|.+...
T Consensus 60 kI~Di~~~--~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~Ir~tlW~~~--------~l~~Gdvv~I~na~v 129 (423)
T PRK07218 60 DIKELSTD--DKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGTISYTAWKDF--------GLSPGDTVTIGNAGV 129 (423)
T ss_pred cHhhCCCC--CceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCeEEEEEECCC--------CCCCCCEEEEeccEe
Confidence 57777654 47799999998873 1 235777888888888888875431 399999999997665
Q ss_pred eCCCCCCCCCcCCccEEEEEeeEEE
Q psy3762 77 SRPNKTNNTNLISGNIEILCRELKI 101 (595)
Q Consensus 77 ~~~~~~~~~~~~~g~iEl~v~~i~v 101 (595)
.. -.|.+||.+.+-.-
T Consensus 130 re---------~~g~~el~ig~~t~ 145 (423)
T PRK07218 130 RE---------WDGRPELNIGESTT 145 (423)
T ss_pred ec---------cCCceEEeccCcce
Confidence 43 34678888754433
No 200
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=69.59 E-value=7 Score=43.07 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=21.1
Q ss_pred HHHHHHHhhCCCCCccceeccHHHHHHHHcC
Q psy3762 521 FGFLLNSLKYGAPPHGGIAFGLDRLITIMTG 551 (595)
Q Consensus 521 ~~~yL~al~~G~PPh~G~glGlDRLvm~l~g 551 (595)
|..|+..+.--.-|-.||++|+|||++++..
T Consensus 287 YD~L~~~fg~~~~PavGfa~g~erl~~~l~~ 317 (430)
T CHL00201 287 YDSLIHQLGGPKTPAVGCAIGLERLLLIAKD 317 (430)
T ss_pred hHHHHHHhCCCCCCeeEEEecHHHHHHHHhc
Confidence 4445555521133677999999999998854
No 201
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=69.46 E-value=1.3 Score=50.09 Aligned_cols=33 Identities=39% Similarity=0.418 Sum_probs=25.4
Q ss_pred ceEEEecceecCCC-C--CCCCccccccccccccCCH
Q psy3762 209 RYYQITKCFRDEDL-R--SDRQPEFTQIDCETSFMNE 242 (595)
Q Consensus 209 rvf~i~~~FR~E~~-~--~~r~~EFt~lE~e~~~~~~ 242 (595)
.+-|||++||||=+ + --|-.||+|.|+|. |++-
T Consensus 185 giaQiGk~fRNEIsPr~~l~R~REF~q~EiE~-F~~p 220 (551)
T TIGR00389 185 GVAQIGKSFRNEISPRNGLFRVREFEQAEIEF-FVHP 220 (551)
T ss_pred eehhhhHhhhcccCcccceEEeehhhhchhhe-ecCc
Confidence 58999999999932 2 23666999999996 6554
No 202
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=69.01 E-value=17 Score=30.60 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=37.9
Q ss_pred eeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEe
Q psy3762 43 GLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKIL 102 (595)
Q Consensus 43 g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vl 102 (595)
..++|.+-.+. .-..++.++.||.|.|+|.+..+.-...+. .....+++.++++.++
T Consensus 44 ~~~~v~~~g~~--a~~~~~~~~kG~~V~v~G~l~~~~~~~~~g-~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 44 DWIRVVAFGKL--AENAAKYLKKGDLVYVEGRLRTRSWEDKDG-QKRYGTEVVADRIEFL 100 (100)
T ss_pred EEEEEEEEhHH--HHHHHHHhCCCCEEEEEEEEEeceeECCCC-CEEEEEEEEEEEEEEC
Confidence 35777776552 223456799999999999998765322211 1234688898888764
No 203
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=68.64 E-value=24 Score=35.52 Aligned_cols=118 Identities=16% Similarity=0.246 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhh-----hCCCeeccCceeecCCCC-----CCcccccccc--CCCCCeeeccCChHHHHHHHHhh-CC--
Q psy3762 143 YKVTMEVRKFLD-----SKKFIEIETPILSKSTPE-----GARDYLVPSR--INPGEFFALPQSPQLFKQLLMVA-NF-- 207 (595)
Q Consensus 143 s~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~~-----ga~~f~~~~~--~~~~~~~~L~~Spql~~q~ll~~-g~-- 207 (595)
...+..|+++|. +.+.+.|..|+++....+ ++.+-.|.|. ...+..+-.-+|---||.+.+.. |+
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~ 86 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPP 86 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCC
Confidence 445566666664 469999999999874221 1211112221 22344555678888888887652 34
Q ss_pred -CceEEEeccee-cCC-CCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHH
Q psy3762 208 -DRYYQITKCFR-DED-LRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKT 260 (595)
Q Consensus 208 -~rvf~i~~~FR-~E~-~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~ 260 (595)
.-+|+=.++.| .|+ .+..|..=.-|-|||......+--+..+.+.++.+++.+
T Consensus 87 geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~ai 142 (244)
T PF03590_consen 87 GEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAI 142 (244)
T ss_dssp T-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHH
T ss_pred CceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHH
Confidence 57999999999 775 789999989999999987765555555555665555544
No 204
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=68.07 E-value=7.5 Score=42.14 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=33.1
Q ss_pred eeeEEecC----EEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCC
Q psy3762 480 AYDLIING----WEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 480 ~fDl~~~G----~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~ 552 (595)
-|+.+..+ .-|+||+. |..++..+.-...|..||++|+|||+.++...
T Consensus 262 vFe~~~~~~~~~~~i~~GGR-------------------------YD~L~~~f~~~~~~avGfs~~~~~l~~~l~~~ 313 (397)
T TIGR00442 262 VFEFVTDELGAQGTICGGGR-------------------------YDGLVEELGGPPTPAVGFAIGIERLLLLLEEL 313 (397)
T ss_pred EEEEEECCCCccceeeeccc-------------------------hHHHHHHhCCCCCceEEeeecHHHHHHHHHhc
Confidence 57777763 45888874 33344444322467889999999999998754
No 205
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=67.70 E-value=9.5 Score=32.59 Aligned_cols=56 Identities=13% Similarity=0.206 Sum_probs=33.4
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEe
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKIL 102 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vl 102 (595)
.++|++-.+.. -.....++.||.|.|+|.+..+.-...+ ..+...++|.|++|++|
T Consensus 49 ~~~v~~~g~~A--~~~~~~l~kG~~V~V~G~l~~~~~~~~~-G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 49 WINVVAWGKLA--ENVAEYLKKGDRVYVEGRLRTRTYEDKD-GQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEEHHHH--HHHHHH--TT-EEEEEEEEEEEEEESTT-SSEEEEEEEEEEEEEE-
T ss_pred EEEEEeeeecc--cccceEEcCCCEEEEEEEEEeeEEECCC-CCEEEEEEEEEEEEEeC
Confidence 37777665422 2234569999999999999876422211 11334689999999875
No 206
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=67.34 E-value=22 Score=35.79 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHh---hCCCceEEEecceec
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMV---ANFDRYYQITKCFRD 219 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~---~g~~rvf~i~~~FR~ 219 (595)
++|-+.+-+||.++|...|..-.|.+.. + ...++..-+++.++...+- ....|+-..-+|.|.
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~d--D------------ptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR~ 67 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRD--D------------PTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRA 67 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCC--C------------CchheeccchhhhhHHhcCCCCCCCCceeeeeeceec
Confidence 4566778899999999998866665321 0 0112223333444444311 123588999999998
Q ss_pred CC---CC-CCCCc-cccccccccccCCH--HHHHHHHHHHHHHH
Q psy3762 220 ED---LR-SDRQP-EFTQIDCETSFMNE--EEIRNLFEEMIRVI 256 (595)
Q Consensus 220 E~---~~-~~r~~-EFt~lE~e~~~~~~--~dl~~~~E~ll~~l 256 (595)
-+ .. +.||+ =|.|| .-.+|.+| ++.+..+-+++-..
T Consensus 68 ~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT~~ 110 (232)
T cd00673 68 GDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLTEV 110 (232)
T ss_pred CChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHHhh
Confidence 54 33 56777 77777 45577776 78888887776554
No 207
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=67.12 E-value=7.6 Score=42.28 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=32.6
Q ss_pred eeeEEecC----EEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCC
Q psy3762 480 AYDLIING----WEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 480 ~fDl~~~G----~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~ 552 (595)
-|+.+.++ .-|+||+. |..++..+.-...|-.||++|+|||+.++...
T Consensus 263 vFe~~~~~~g~~~~i~~GGR-------------------------YD~L~~~f~~~~~pavGfs~~le~l~~~l~~~ 314 (412)
T PRK00037 263 VFEFVTDDLGAQGTVCGGGR-------------------------YDGLVEQFGGPPTPAVGFAIGVERLLLLLEEL 314 (412)
T ss_pred EEEEEECCCCccceeeeccc-------------------------hhHHHHHhCCCCCceEEEEEcHHHHHHHHHhc
Confidence 48888763 26888876 33344443212457779999999999888654
No 208
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=66.90 E-value=55 Score=32.71 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=56.3
Q ss_pred CEEEEEEEEEe---Eec--cC-CeEEEEEE-eC----CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCC
Q psy3762 16 QVISLCGWVHR---KRN--HG-GIIFIDLR-DY----TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNN 84 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~--~g-~l~Fi~Lr-D~----~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~ 84 (595)
..|.|.|++.+ .|. .| .++-+.|- +. +..+.|++=....+ .+..++.||-|.|+|.++.+.-....
T Consensus 110 N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~~Ae---~~~~l~KG~~V~V~GrL~sr~y~~k~ 186 (219)
T PRK05813 110 NEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGRNAR---FCKTLEVGDNIRVWGRVQSREYQKKL 186 (219)
T ss_pred cEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhHHhH---HHhhCCCCCEEEEEEEEEecceEcCC
Confidence 46899999964 344 34 35544443 21 34688887665433 34569999999999999887432111
Q ss_pred C---CcCCccEEEEEeeEEEeecC
Q psy3762 85 T---NLISGNIEILCRELKILNSS 105 (595)
Q Consensus 85 ~---~~~~g~iEl~v~~i~vls~~ 105 (595)
. ..+....||.|++++.+++.
T Consensus 187 g~~~g~kr~~~eV~v~~i~~l~~~ 210 (219)
T PRK05813 187 SEGEVVTKVAYEVSISKMEKVEKE 210 (219)
T ss_pred CCccceEEEEEEEEEEEEEEcCCh
Confidence 1 01223689999999999864
No 209
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=66.89 E-value=30 Score=32.37 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=47.1
Q ss_pred cccccc--cCCCEEEEEEEEE--eEec-cC-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEE
Q psy3762 7 GNITEK--LLDQVISLCGWVH--RKRN-HG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVC 76 (595)
Q Consensus 7 ~~l~~~--~~g~~V~i~GwV~--~~R~-~g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~ 76 (595)
+|+... ..|+.|+|.|+|. ++.. .+ .+.| .|.|++..+.|+.....|+. .+.|..|-|+|++.
T Consensus 41 se~~~~~~~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~~~i~V~Y~G~lPd~------F~eg~~VVv~G~~~ 109 (148)
T PRK13254 41 SEVAEGEAPAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGNATVPVVYTGILPDL------FREGQGVVAEGRLQ 109 (148)
T ss_pred HHHhcCCccCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCCeEEEEEECCCCCcc------ccCCCEEEEEEEEC
Confidence 344433 4689999999995 4443 44 5777 78999989999998766643 46699999999985
No 210
>PRK07080 hypothetical protein; Validated
Probab=66.76 E-value=5.6 Score=41.66 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=35.7
Q ss_pred ceEE-EecceecCCCC-CCCCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 209 RYYQ-ITKCFRDEDLR-SDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 209 rvf~-i~~~FR~E~~~-~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
++|. .|.|||+|++. ..|.-||+|-|+...+ +-+.+.+.-+..+....
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~~ 202 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRIG-TPEQIVAFRQSWIERGT 202 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEec-CHHHHHHHHHHHHHHHH
Confidence 6665 58899999964 4455599999998765 66778777777666553
No 211
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=66.73 E-value=5.2 Score=41.48 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=29.7
Q ss_pred eeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHc
Q psy3762 480 AYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMT 550 (595)
Q Consensus 480 ~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~ 550 (595)
-|+.+.+|..|+||+. |+ + . --|-.|||+|+|||+.+|.
T Consensus 242 vFe~~~~~~~i~~GGR----YD---------~------------------~-~~PAvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 242 FFRFFDGNSTLASGGN----YE---------I------------------D-GISSSGFALYTDNLIEILL 280 (281)
T ss_pred EEEEEECCceeccccC----CC---------C------------------C-CCCcceEEeeHHHHHHHhh
Confidence 5888888888999987 11 0 1 1278999999999998875
No 212
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=65.54 E-value=1e+02 Score=27.70 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=54.2
Q ss_pred cccccccc--ccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCC
Q psy3762 4 HYCGNITE--KLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNK 81 (595)
Q Consensus 4 ~~~~~l~~--~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 81 (595)
+++.|++. ...|+.|++.|++++.-..-.++=+.=...++.-|+.++-+..+. -..+.||.+.+-|.+...+
T Consensus 8 ~~l~Evs~~~~~~g~svR~~GrL~~yD~~~~~a~l~~~~~~~~~~l~V~t~~l~~----~~~~~gslyq~iGEl~~~~-- 81 (118)
T PF15490_consen 8 VFLWEVSSGFVPEGKSVRTFGRLQSYDVATSRATLTAQHESDQHSLKVDTKLLEP----FQARVGSLYQFIGELEHQP-- 81 (118)
T ss_pred EehHHhcCccccCCCeEEEEEEEEEEeccCCEEEEEeeccCCCcEEEEEeeEccc----cccCCCCEEEEEEEEEEEc--
Confidence 34556643 457899999999999987776664422333333444444332111 1247999999999998762
Q ss_pred CCCCCcCCccEEEEEeeEEEee
Q psy3762 82 TNNTNLISGNIEILCRELKILN 103 (595)
Q Consensus 82 ~~~~~~~~g~iEl~v~~i~vls 103 (595)
..++..|++.=.+.+.
T Consensus 82 ------~~~~~~L~ARV~r~Vd 97 (118)
T PF15490_consen 82 ------QDGGIVLKARVLRCVD 97 (118)
T ss_pred ------CCCcEEEEEEEEEecC
Confidence 2355666665555444
No 213
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=65.35 E-value=43 Score=38.83 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=49.6
Q ss_pred ccccccCCCEEEEEEEEEeEec--c--CCeEEEEEEe-CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 8 NITEKLLDQVISLCGWVHRKRN--H--GGIIFIDLRD-YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 8 ~l~~~~~g~~V~i~GwV~~~R~--~--g~l~Fi~LrD-~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
.+.+-..|+.|+|.|.|.+... . .++.-+.+.| +++.+++++-. .+ + ..+.++.|..+.|.|+|...
T Consensus 25 ~i~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~F~-~~--~-~~~~~~~g~~~~~~Gk~~~~ 96 (630)
T TIGR00643 25 TIGELLPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKKLELRFFN-RA--F-LKKKFKVGSKVVVYGKVKSS 96 (630)
T ss_pred CHHHcCCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCEEEEEEEC-CH--H-HHhhCCCCCEEEEEEEEEee
Confidence 3444456999999999875422 1 2466788999 99999999875 22 1 23669999999999999764
No 214
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=65.10 E-value=19 Score=41.41 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhhCCCeeccCceeecCCC----CC---C-ccc-cccccCCCCCeeeccCChHHHHHHHHhhCC-----
Q psy3762 142 RYKVTMEVRKFLDSKKFIEIETPILSKSTP----EG---A-RDY-LVPSRINPGEFFALPQSPQLFKQLLMVANF----- 207 (595)
Q Consensus 142 rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----~g---a-~~f-~~~~~~~~~~~~~L~~Spql~~q~ll~~g~----- 207 (595)
...+.+.+|+.|...||.||-|-.|++... .+ . ... .+... ...++=.|++|---.+=..++.+.
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP-~s~e~~vlRtSLlPgLL~~l~~N~~~~~p 477 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNP-RSADFEVVRTSLLPGLLKTLGHNKDAPKP 477 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCC-cchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence 456677889999999999999999986421 00 0 000 00000 011122345443322222223222
Q ss_pred CceEEEecceecCCCCCCCCcccccccccccc--CCHHHHHHHHHHHHHHH
Q psy3762 208 DRYYQITKCFRDEDLRSDRQPEFTQIDCETSF--MNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 208 ~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~--~~~~dl~~~~E~ll~~l 256 (595)
-|+||||+||-.+........|-..+=+-.++ +++.++..+++.++..+
T Consensus 478 ~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l 528 (597)
T PLN02265 478 IKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVL 528 (597)
T ss_pred eeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHc
Confidence 37999999995432110100144444444444 36788888888887543
No 215
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.60 E-value=34 Score=33.09 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=53.3
Q ss_pred CEEEEEEEEEeEeccC--C-eEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 16 QVISLCGWVHRKRNHG--G-IIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 16 ~~V~i~GwV~~~R~~g--~-l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
..|-|.|-|.++-.-| . ..=+.+.|.+|.+=|+...-+|+..+.+..+...|.|.|+|++..
T Consensus 46 nRifivGtltek~~i~ed~~~~R~rVvDpTGsF~Vyag~yqPEa~a~l~~ve~~~~VaViGKi~~ 110 (196)
T COG3390 46 NRIFIVGTLTEKEGIGEDREYWRIRVVDPTGSFYVYAGQYQPEAKAFLEDVEVPDLVAVIGKIRT 110 (196)
T ss_pred eEEEEEEEEEeccCcCCcccEEEEEEecCCceEEEEcCCCChHHHHHHHhccCCceEEEecccce
Confidence 3588999999988777 3 778899999999888877767888888999999999999999865
No 216
>PRK06386 replication factor A; Reviewed
Probab=59.85 E-value=60 Score=34.95 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=55.1
Q ss_pred ccccccccCCCEEEEEEEEEeEec--------cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 6 CGNITEKLLDQVISLCGWVHRKRN--------HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 6 ~~~l~~~~~g~~V~i~GwV~~~R~--------~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
|++|... ..-|.|.|+|..+=. .|.+.=+.|-|.+|++.+++= ...|..|++|.|.+.++.
T Consensus 110 I~DL~~g--~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGrIr~TlW---------~~~l~eGd~v~i~na~v~ 178 (358)
T PRK06386 110 IRDLSLV--TPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTARVRISSF---------GKPLEDNRFVRIENARVS 178 (358)
T ss_pred eEeccCC--CCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCeEEEEEc---------cccccCCCEEEEeeeEEE
Confidence 5566432 344788888865411 134666677777777777753 335899999999997765
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
. -.|.+||++.+...+.+.
T Consensus 179 e---------~~G~~el~v~~~t~I~~~ 197 (358)
T PRK06386 179 Q---------YNGYIEISVGNKSVIKEV 197 (358)
T ss_pred c---------cCCeEEEEeCCeEEEEEC
Confidence 3 368899999888777764
No 217
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=59.37 E-value=95 Score=36.04 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=56.5
Q ss_pred cccCCCEEEEEEEEEeEecc---C-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCC
Q psy3762 11 EKLLDQVISLCGWVHRKRNH---G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTN 86 (595)
Q Consensus 11 ~~~~g~~V~i~GwV~~~R~~---g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~ 86 (595)
....|+.|++.|.|.+.-.. + +..=+.+.|+++.+-+++-...+ -..+.++.|..|.|+|+|...
T Consensus 56 ~~~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~~l~l~fFn~~~---~l~~~~~~G~~v~v~Gk~~~~-------- 124 (677)
T COG1200 56 EARPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTGVLTLVFFNFPA---YLKKKLKVGERVIVYGKVKRF-------- 124 (677)
T ss_pred hcCCCceEEEEEEEEeeeccCCCCCceEEEEEecCcEEEEEEEECccH---HHHhhCCCCCEEEEEEEEeec--------
Confidence 34578999999999665544 3 45567899999999988765532 134669999999999999873
Q ss_pred cCCccEEEEEeeEEEee
Q psy3762 87 LISGNIEILCRELKILN 103 (595)
Q Consensus 87 ~~~g~iEl~v~~i~vls 103 (595)
.+..++.--++.+.+
T Consensus 125 --~~~~~~~hpe~~~~~ 139 (677)
T COG1200 125 --KGGLQITHPEYIVND 139 (677)
T ss_pred --cCceEEEcceEEecC
Confidence 344555544444443
No 218
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=59.32 E-value=10 Score=41.01 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=29.4
Q ss_pred eeeEEecC---EEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhC-CCCCccceeccHHHHHHH
Q psy3762 480 AYDLIING---WEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKY-GAPPHGGIAFGLDRLITI 548 (595)
Q Consensus 480 ~fDl~~~G---~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~-G~PPh~G~glGlDRLvm~ 548 (595)
=|+++.+| ..|+||+. |..++..+.. .--|-.||++|+|||+.+
T Consensus 323 VFe~~~~~~~~~~I~~GGR-------------------------YD~Li~~fg~~~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 323 VFEIRAAGNGDPPLAGGGR-------------------------YDGLLTRLGAGEPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred EEEEEECCCCCCcccCCcC-------------------------HHHHHHHhCCCCCCCeeEEEEcHHHHHhh
Confidence 47777754 36888876 4445555432 145788999999998654
No 219
>PRK02801 primosomal replication protein N; Provisional
Probab=58.69 E-value=47 Score=28.84 Aligned_cols=52 Identities=10% Similarity=0.253 Sum_probs=33.7
Q ss_pred EEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEee
Q psy3762 45 VQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILN 103 (595)
Q Consensus 45 lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls 103 (595)
++||+-.+..+ ...+.++.|+-|.|+|.+..... .+ ....+.|++++++.++
T Consensus 50 i~~va~G~~Ae--~~~~~l~kGs~v~V~G~L~~~~~--~~---g~~~~~v~~~~i~~l~ 101 (101)
T PRK02801 50 MPVIVSGNQFQ--AITQSITVGSKITVQGFISCHQG--RN---GLSKLVLHAEQIELID 101 (101)
T ss_pred EEEEEEcHHHH--HHHhhcCCCCEEEEEEEEEEeEC--CC---CCEEEEEEEEEEEECC
Confidence 77887665322 23346999999999999986211 11 1123568999888653
No 220
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=58.12 E-value=59 Score=29.57 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=40.1
Q ss_pred CCEEEEEEEEEeEeccC-C-eEEE-EE----EeC-----CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 15 DQVISLCGWVHRKRNHG-G-IIFI-DL----RDY-----TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 15 g~~V~i~GwV~~~R~~g-~-l~Fi-~L----rD~-----~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
++.+++.|.|.+..... + ..|. .+ ..+ ++++++..+++.. ..+..||.+.++|++...+
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~Gd~i~~~g~l~~~~ 145 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ------PRLQPGDRIRVRGKLKPPS 145 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccc------cccCCCCEEEEEEEEecCC
Confidence 88999999998886653 3 3232 21 111 2357877776642 1689999999999997643
No 221
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=57.33 E-value=58 Score=30.87 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=46.1
Q ss_pred cCCCEEEEEEEEE--eEeccC---CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 13 LLDQVISLCGWVH--RKRNHG---GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 13 ~~g~~V~i~GwV~--~~R~~g---~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
..|+.++|-|.|. ++...+ .+.| .|.|+...+.|......|++ .+.|.-|.++|++..
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilPDl------FrEG~gVVveG~~~~ 117 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEGSVTVSYEGILPDL------FREGQGVVVQGTLEK 117 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCcEEEEEEeccCCcc------ccCCCeEEEEEEECC
Confidence 3689999999997 777653 3566 88999999999988766543 467999999999853
No 222
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=51.43 E-value=66 Score=24.78 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=38.5
Q ss_pred EEEEEEEeEeccCCeEEEEEEeCCee-EEEEECCCcHHHHHHHhcCCCCcEEEEE
Q psy3762 19 SLCGWVHRKRNHGGIIFIDLRDYTGL-VQIVFDPNDIKIYKIAKIIRNEFCLQII 72 (595)
Q Consensus 19 ~i~GwV~~~R~~g~l~Fi~LrD~~g~-lQvv~~~~~~~~~~~~~~l~~es~V~V~ 72 (595)
.+.|.|..+...|...++.+.-+.+. +-+.++.+.. .-.+|.+|+-|.+.
T Consensus 6 ~l~g~V~~ie~~g~~~~v~~~~~~~~~l~a~it~~~~----~~L~L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLGSEVEVTLDLGGGETLTARITPESA----EELGLKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESSSEEEEEEEETTSEEEEEEEEHHHH----HHCT-STT-EEEEE
T ss_pred EEEEEEEEEEECCCeEEEEEEECCCCEEEEEEcHHHH----HHcCCCCCCEEEEE
Confidence 58899999999999999999999987 9999876532 12358899988753
No 223
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=51.21 E-value=1e+02 Score=29.21 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=45.8
Q ss_pred cCCCEEEEEEEEE--eEeccCC---eEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 13 LLDQVISLCGWVH--RKRNHGG---IIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 13 ~~g~~V~i~GwV~--~~R~~g~---l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
..|+.++|-|.|. ++...++ +.| .|.|+...+.|......|++ .+.|.-|.|+|.+..
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~~v~V~Y~GilPDl------FrEG~gVVveG~~~~ 117 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGGSVTVTYEGILPDL------FREGQGIVAQGVLEE 117 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCeEEEEEEcccCCcc------ccCCCeEEEEEEECC
Confidence 3689999999997 7776542 566 78999999999988765543 466999999999853
No 224
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=49.85 E-value=53 Score=31.85 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=39.6
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+.|++-.... -...+.|+.|+.|.|+|.+..+.-...+. .+...+||.|++|++|+..
T Consensus 53 w~~V~~fGk~A--E~v~~~LkKGs~V~VeGrL~~~~yeDkdG-~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 53 WHRVAFFGRLA--EIVGEYLKKGSSVYIEGRIRTRKWQGQDG-QDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred EEEEEEehHHH--HHHHHHhCCCCEEEEEEEEEeCceECCCC-cEEEEEEEEEeEEEECCCC
Confidence 46666654422 23456799999999999998764221111 1234689999999999854
No 225
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=49.72 E-value=1.8e+02 Score=29.08 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCCEEEEEEEEEe---Eec-cCCeEEEEE-------EeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCC
Q psy3762 14 LDQVISLCGWVHR---KRN-HGGIIFIDL-------RDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKT 82 (595)
Q Consensus 14 ~g~~V~i~GwV~~---~R~-~g~l~Fi~L-------rD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 82 (595)
.+..|.|.|+|.+ .|- ..+-.|... .+....+.|++.....+ .+. +..|+.|.|+|.++ +-...
T Consensus 7 ~~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~D~i~v~v~~rlae---~~~-l~kG~~v~VeGqlr-sy~~~ 81 (219)
T PRK05813 7 ENNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSKDILPVTVSERLLA---GMD-LKVGTLVIVEGQLR-SYNKF 81 (219)
T ss_pred hcCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCccEEEEEEEhhhhh---hhc-ccCCCEEEEEEEEE-EeccC
Confidence 4678999999964 232 123333322 24445689998876432 223 99999999999998 22111
Q ss_pred CCCCcCCccEEEEEeeEEEeecC
Q psy3762 83 NNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 83 ~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+ ..+.--+||.+.+++.+++.
T Consensus 82 ~~-G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 82 ID-GKNRLILTVFARNIEYCDER 103 (219)
T ss_pred CC-CcEEEEEEEEEEEEEEccCC
Confidence 01 11234689999999999864
No 226
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=48.38 E-value=44 Score=38.38 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHh---hCCCceEEEecceec
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMV---ANFDRYYQITKCFRD 219 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~---~g~~rvf~i~~~FR~ 219 (595)
++|-+.+-+||.++|...|..-.|.+.. ....++..-++..++...+- ....|+=..-+|.|.
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~~--------------d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~ 69 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPEN--------------DPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLRT 69 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCCC--------------CCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc
Confidence 4566778899999999988866555421 11223333344444444321 113578888999999
Q ss_pred ---CCCCCCCCc-cccccccccccCCH--HHHHHHHHHHHHH
Q psy3762 220 ---EDLRSDRQP-EFTQIDCETSFMNE--EEIRNLFEEMIRV 255 (595)
Q Consensus 220 ---E~~~~~r~~-EFt~lE~e~~~~~~--~dl~~~~E~ll~~ 255 (595)
|++++.||+ =|-||- -.+|.+| ++.+..+-+|+-.
T Consensus 70 ~Dle~VG~~rHhTfFEMlG-nfSfgdYfK~eai~~awe~lt~ 110 (594)
T PRK01584 70 GDIDEVGDLSHLTFFEMLG-NWSLGAYFKEESIKYSFEFLTS 110 (594)
T ss_pred ccccccCCCcchhHHHhhc-cccHhhhhHHHHHHHHHHHhcc
Confidence 556778888 555543 3456676 7777777777754
No 227
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=48.10 E-value=32 Score=38.61 Aligned_cols=32 Identities=25% Similarity=0.554 Sum_probs=25.3
Q ss_pred CccceeccHHHHHHHHcCCCCcccc--ccCCCCC
Q psy3762 534 PHGGIAFGLDRLITIMTGSKSIRDV--IAFPKTQ 565 (595)
Q Consensus 534 Ph~G~glGlDRLvm~l~g~~~IRdv--i~FPr~~ 565 (595)
|...|+|++|||+|...+.++||+. -.||+.|
T Consensus 317 pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFP 350 (529)
T PRK06253 317 PVMNLGLGVERLAMILYGAEDVREMVYPQFYEWE 350 (529)
T ss_pred ceEEEEEeHHHHHhhhcCcccccccCcCCCCCCC
Confidence 4578999999999999998999984 2444544
No 228
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=48.10 E-value=1.9e+02 Score=27.07 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=51.4
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEEE-e--------C-----CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEE
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDLR-D--------Y-----TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKV 75 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~Lr-D--------~-----~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v 75 (595)
..|+|.|||-+ +|.. | .++-+.|- + | +..+.|++=.+.. +-...+.|+.|+.|.|+|.+
T Consensus 6 N~V~LiGrLg~DPElr~t~~G~~v~~fslAv~~~~k~~~~G~~~~~T~w~~v~~~g~~~-Ae~~~~~l~KG~~V~V~GrL 84 (152)
T PRK06642 6 NKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEGL-VSVVERYVTKGSKLYIEGSL 84 (152)
T ss_pred eEEEEEEEccCCceEEECCCCCEEEEEEEEeccccccccCCccccceeEEEEEEeChHH-HHHHHHhCCCCCEEEEEEEE
Confidence 46889999976 6653 4 23333332 1 1 1236777654311 12234569999999999999
Q ss_pred EeCCCCCCCCCcCCccEEEEEeeE----EEeecC
Q psy3762 76 CSRPNKTNNTNLISGNIEILCREL----KILNSS 105 (595)
Q Consensus 76 ~~~~~~~~~~~~~~g~iEl~v~~i----~vls~~ 105 (595)
+.+.-...+. .+....||.|+++ ..|++.
T Consensus 85 ~~~~y~dkdG-~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 85 QTRKWNDNSG-QEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred EeCeeECCCC-CEEEEEEEEEEecccceEeccCC
Confidence 8764221111 1233578988876 666643
No 229
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=46.34 E-value=36 Score=27.69 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=32.4
Q ss_pred EEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE
Q psy3762 19 SLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII 72 (595)
Q Consensus 19 ~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~ 72 (595)
.+.|+|.++..+| +|+++ +-+-+...++.+.. .+-..++.|+.|.+.
T Consensus 7 ~v~g~V~si~d~G--~~v~~--g~~gv~Gfl~~~~~---~~~~~~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHG--YILDI--GIPGTTGFLPKKDA---GNFSKLKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCE--EEEEe--CCCCcEEEEEHHHC---CcccccCCCCEEEEE
Confidence 4899999999999 88888 32225666664421 111568899988765
No 230
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=45.39 E-value=2.2e+02 Score=26.60 Aligned_cols=82 Identities=7% Similarity=0.092 Sum_probs=49.8
Q ss_pred cccccCCCEEEEEEEEEeEeccC-Ce-EEEEEEeC-Ce----------eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEE
Q psy3762 9 ITEKLLDQVISLCGWVHRKRNHG-GI-IFIDLRDY-TG----------LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKV 75 (595)
Q Consensus 9 l~~~~~g~~V~i~GwV~~~R~~g-~l-~Fi~LrD~-~g----------~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v 75 (595)
...+..|+.|+|.|+|.-.-..+ ++ -|+-+.+- .| .|.|...+.. .--..-+.|.|+|++
T Consensus 49 ~v~~L~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqiV~V~~~~~~-------~~~~~~~pv~V~G~l 121 (146)
T PF11736_consen 49 VVKALDGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQIVHVKMPKPI-------PVDSLYDPVWVEGTL 121 (146)
T ss_pred hhHHhCCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccEEEEEeCCCc-------cccccceeEEEEEEE
Confidence 34456799999999999988654 55 48877773 33 1333333221 111235799999999
Q ss_pred EeCCCCCCCCCcCCccEEEEEeeEE
Q psy3762 76 CSRPNKTNNTNLISGNIEILCRELK 100 (595)
Q Consensus 76 ~~~~~~~~~~~~~~g~iEl~v~~i~ 100 (595)
+...... ......+.+.+.+|+
T Consensus 122 ~~~~~~~---~~~~~~Y~m~a~~v~ 143 (146)
T PF11736_consen 122 KVERSSS---DLGTSGYSMDADSVE 143 (146)
T ss_pred Eeccccc---hheeEEEEEEeeEEE
Confidence 8764321 122335666666665
No 231
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.96 E-value=79 Score=29.97 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=52.0
Q ss_pred CEEEEEEEEEe---Eecc--C-CeE-EEEEEe------------CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEE
Q psy3762 16 QVISLCGWVHR---KRNH--G-GII-FIDLRD------------YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVC 76 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~-Fi~LrD------------~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~ 76 (595)
..|+|.|+|.+ +|.. | .++ |-...+ .+..+.|++-.+. .-...+.|+.|+.|.|+|.++
T Consensus 5 N~V~L~G~l~~dPe~r~t~~G~~v~~fsvA~~~~~~~~~G~~~~~t~~~~v~~wg~~--Ae~~~~~l~KG~~V~V~G~L~ 82 (164)
T TIGR00621 5 NKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRL--AEVAAQYLKKGSLVYVEGRLR 82 (164)
T ss_pred cEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCceecCCCCEeccceEEEEEEehHH--HHHHHHhCCCCCEEEEEEEEE
Confidence 35778888866 4543 3 233 333222 1234666655442 223456799999999999998
Q ss_pred eCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 77 SRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 77 ~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+.-...+. .+...+||.|++|..|...
T Consensus 83 ~~~~~~kdG-~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 83 TRKWEDQNG-QKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred eceEECCCC-cEEEEEEEEEEEEeecccc
Confidence 764321111 1234689999999887754
No 232
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=43.85 E-value=98 Score=28.90 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=38.3
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeec
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~ 104 (595)
.+.|++=.... -...+.|+.|+.|.|+|.+..+.-...+. .....+||.+++|.++..
T Consensus 55 w~~V~~wg~~A--e~v~~~l~KG~~V~V~GrL~~~~w~dkdG-~~r~~~eI~a~~i~~l~~ 112 (148)
T PRK08182 55 WAPVELWHRDA--EHWARLYQKGMRVLVEGRMERDEWTDNED-NERVTFKVEARRVGILPY 112 (148)
T ss_pred EEEEEEEhHHH--HHHHHhcCCCCEEEEEEEEEecccCCCCC-CEEEEEEEEEeEEEEcCC
Confidence 46666654422 22346699999999999998764322211 123368999999998764
No 233
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=43.75 E-value=1.5e+02 Score=22.80 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=38.2
Q ss_pred EEEEEEEeEeccCCeEEEEEEeC-C-eeEEEEECCCcHHHHHHHhcCCCCcEEEEE
Q psy3762 19 SLCGWVHRKRNHGGIIFIDLRDY-T-GLVQIVFDPNDIKIYKIAKIIRNEFCLQII 72 (595)
Q Consensus 19 ~i~GwV~~~R~~g~l~Fi~LrD~-~-g~lQvv~~~~~~~~~~~~~~l~~es~V~V~ 72 (595)
.+.|.|.+++..|..+.++|... + ..+.|-++.+. .-..+..|+.|.+.
T Consensus 6 ~l~a~V~~v~~~G~~vRlEl~~~~~~~~iEvel~~~~-----~~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVGPEVRLELKRLDDGEPIEVELPRER-----RQLGLQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecCCeEEEEEEECCCCCEEEEEeCHhH-----HhcCCCCCCEEEEE
Confidence 57899999999999999999665 3 37999888762 22456779998764
No 234
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=43.45 E-value=1.4e+02 Score=23.24 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=36.5
Q ss_pred EEEEEEEeEeccCCeEEEEEEeCCe-eEEEEECCCcHHHHHHHhcCCCCcEEEEE
Q psy3762 19 SLCGWVHRKRNHGGIIFIDLRDYTG-LVQIVFDPNDIKIYKIAKIIRNEFCLQII 72 (595)
Q Consensus 19 ~i~GwV~~~R~~g~l~Fi~LrD~~g-~lQvv~~~~~~~~~~~~~~l~~es~V~V~ 72 (595)
.+.|.|.++...|..+-+.++-+.+ .+.+.++.... .-..|+.|+.|.+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~~~l~a~i~~~~~----~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGGTKLTAVITLESV----AELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCCCEEEEEecHHHH----hhCCCCCCCEEEEE
Confidence 6899999998888777777776655 78888876431 12457889987653
No 235
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=43.21 E-value=54 Score=29.89 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=37.7
Q ss_pred EEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeec
Q psy3762 45 VQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 45 lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~ 104 (595)
+-|++=... +-...+.|+.|+.|.|+|.++.+.- ..+. ......||.++++.+|..
T Consensus 49 ~~v~~fg~~--Ae~v~~~l~KG~~V~V~Grl~~~~y-~kdG-~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 49 INVVLWGKL--AETLASYASKGSLISIDGELRTRKY-EKDG-QTHYVTEVLCQSFQLLES 104 (131)
T ss_pred EEEEEehHH--HHHHHHHcCCCCEEEEEEEEEeccC-ccCC-cEEEEEEEEEEEEEECcC
Confidence 555554332 2224566999999999999998754 2222 123468999999999874
No 236
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=43.12 E-value=44 Score=38.98 Aligned_cols=113 Identities=17% Similarity=0.068 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhhCCCeeccCceeecCCC----CCCcc--ccccccCCCCCeeeccCChHHHHHHHHhhC-----C-C
Q psy3762 141 LRYKVTMEVRKFLDSKKFIEIETPILSKSTP----EGARD--YLVPSRINPGEFFALPQSPQLFKQLLMVAN-----F-D 208 (595)
Q Consensus 141 ~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----~ga~~--f~~~~~~~~~~~~~L~~Spql~~q~ll~~g-----~-~ 208 (595)
..+...+.+|+++...||.||-|-.|++... ....+ ..+... ...+.-.+++|---.|-..++-+ . -
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~~~~l~NP-iS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~ 430 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDEALELANP-ISEEYSVLRTSLLPGLLEALSYNKNRKNPDV 430 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCcceEecCC-cchhHHHHHHHHHHHHHHHHHHhhccCCCCe
Confidence 4567788899999999999999999986310 01000 000000 00112234555443333333311 1 4
Q ss_pred ceEEEecceecCCCCCCC--C----------ccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 209 RYYQITKCFRDEDLRSDR--Q----------PEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 209 rvf~i~~~FR~E~~~~~r--~----------~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
++|+||.||-.++..... | .+-|+-. .-+++.++...++.++..+-
T Consensus 431 ~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~~~~w~~~---~~v~f~d~Kg~ve~ll~~lg 488 (650)
T COG0072 431 RIFEIGDVFVKDEEAERETRHLAGLAAGLAGEESWQGK---RPVDFYDAKGDLEALLEALG 488 (650)
T ss_pred eEEEeeeeEecCCcccchhHHHHHHhhccccccccccC---CCcCHHHHHHHHHHHHHHhC
Confidence 799999999986332111 1 2223322 24567888888888887763
No 237
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=42.50 E-value=2.1e+02 Score=27.83 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=32.2
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeE
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCREL 99 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i 99 (595)
.+.|++=.+..+ ...+.|+.|+.|.|+|.+..+.-...+. .+...+||.|++|
T Consensus 54 fi~V~~Wg~~Ae--~va~~L~KGd~V~V~GrL~~r~wedkdG-~~rt~~eV~a~~V 106 (186)
T PRK07772 54 FLRCSIWRQAAE--NVAESLTKGMRVIVTGRLKQRSYETREG-EKRTVVELEVDEI 106 (186)
T ss_pred EEEEEEecHHHH--HHHHhcCCCCEEEEEEEEEcCceECCCC-CEEEEEEEEEEEc
Confidence 466776554322 2456799999999999998764321111 1122467777664
No 238
>PRK07218 replication factor A; Provisional
Probab=42.37 E-value=1.2e+02 Score=33.36 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=50.9
Q ss_pred CEEEEEEEEEeE--ec----cC--CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCc
Q psy3762 16 QVISLCGWVHRK--RN----HG--GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNL 87 (595)
Q Consensus 16 ~~V~i~GwV~~~--R~----~g--~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~ 87 (595)
..|+|.|+|..+ |. -| .+.=..|-|.+|++.+++=.+ ...|..|++|.|.+..+..
T Consensus 173 ~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~Ir~tlW~~-------~~~l~~Gd~v~I~na~v~e--------- 236 (423)
T PRK07218 173 RGVNVEARVLELEHREIDGRDGETTILSGVLADETGRLPFTDWDP-------LPEIEIGASIRIEDAYVRE--------- 236 (423)
T ss_pred CceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCceEEEEEecc-------cccCCCCCEEEEeeeEEec---------
Confidence 448999999876 11 12 355556888888888876443 2358999999999877654
Q ss_pred CCccEEEEEeeEEEeec
Q psy3762 88 ISGNIEILCRELKILNS 104 (595)
Q Consensus 88 ~~g~iEl~v~~i~vls~ 104 (595)
-.|.+||.+.+-.-+..
T Consensus 237 ~~G~~elnv~~~t~I~~ 253 (423)
T PRK07218 237 FRGVPSVNVSEFTTVEA 253 (423)
T ss_pred cCCeEEEEECCceEEEE
Confidence 35789999985544443
No 239
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=42.12 E-value=1.9e+02 Score=36.29 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=54.4
Q ss_pred CCEEEEEEEEEeEec----cCC-eEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCC
Q psy3762 15 DQVISLCGWVHRKRN----HGG-IIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLIS 89 (595)
Q Consensus 15 g~~V~i~GwV~~~R~----~g~-l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~ 89 (595)
...|+|.|-|-.+-. .|+ +.-+.|.|.+..+-|..-....+..+....|+.|+.|.|.|.+.... -.
T Consensus 7 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~--------~~ 78 (1213)
T TIGR01405 7 ENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDSLILKKFLKSEEDPEKFDGIKIGKWVRARGKIELDN--------FS 78 (1213)
T ss_pred CCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCCEEEEEecccccchHHHhhcCCCcEEEEEEEEeccC--------CC
Confidence 467999999865433 354 44578999988766554322112234557799999999999997642 24
Q ss_pred ccEEEEEeeEEEee
Q psy3762 90 GNIEILCRELKILN 103 (595)
Q Consensus 90 g~iEl~v~~i~vls 103 (595)
+++.+.+.++..+.
T Consensus 79 ~~~~~~~~~~~~~~ 92 (1213)
T TIGR01405 79 RDLQMIIKDIEEIP 92 (1213)
T ss_pred CceEEEeeeeeecC
Confidence 57777777776543
No 240
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=42.00 E-value=19 Score=36.71 Aligned_cols=57 Identities=25% Similarity=0.482 Sum_probs=37.9
Q ss_pred cccceeeEEecCEEEeecccccCCHHHHHHHHHHc-CCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCC
Q psy3762 476 IFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL-NIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554 (595)
Q Consensus 476 ~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~-g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~ 554 (595)
.++..+++.+||+||.== .-|... |++- -|..+=+.-|+|||.|.+-|.+|
T Consensus 120 AwGlGWEVWldGMEITQf-----------TYFQQvGGi~~-----------------~pv~~EITYGLERiamylQ~vdn 171 (284)
T PF02091_consen 120 AWGLGWEVWLDGMEITQF-----------TYFQQVGGIDC-----------------KPVSVEITYGLERIAMYLQGVDN 171 (284)
T ss_dssp EEEEEEEEEETTCEEEEE-----------EEEEEETTEE------------------SS--EEEEEEHHHHHHHHCT-SS
T ss_pred ccccccEEEECCEEEEEe-----------eeeeeeCCccc-----------------cccceehhhhHHHHHHHHhCCCe
Confidence 467889999999999610 000000 1111 35566799999999999999999
Q ss_pred cccccc
Q psy3762 555 IRDVIA 560 (595)
Q Consensus 555 IRdvi~ 560 (595)
|-|++-
T Consensus 172 v~dl~w 177 (284)
T PF02091_consen 172 VYDLIW 177 (284)
T ss_dssp GGGSEE
T ss_pred eEeeee
Confidence 999864
No 241
>KOG1637|consensus
Probab=40.89 E-value=50 Score=36.49 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCC-----Ccc-ccccccCCCCCeeec------------cCChHH
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEG-----ARD-YLVPSRINPGEFFAL------------PQSPQL 197 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~g-----a~~-f~~~~~~~~~~~~~L------------~~Spql 197 (595)
.++.+.++..||.=...+||.||-||.|-... ..| +.+ |.+. . .++.|.| ..-+--
T Consensus 192 ~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e--~-eke~~~LKPMNCPgHcLmf~~r~rS 268 (560)
T KOG1637|consen 192 TRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFE--V-EKEEFALKPMNCPGHCLMFAHRDRS 268 (560)
T ss_pred chHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeee--e-chhhhccCccCCCccccccccCCcc
Confidence 36779999999999999999999999887531 112 111 1110 0 1111111 111111
Q ss_pred HHHHHHhhCCCceEEEecceecCCCCC----CCCccccccccccccCCH---HHHHHHHHHHHHHHHHHHcC
Q psy3762 198 FKQLLMVANFDRYYQITKCFRDEDLRS----DRQPEFTQIDCETSFMNE---EEIRNLFEEMIRVIFYKTLN 262 (595)
Q Consensus 198 ~~q~ll~~g~~rvf~i~~~FR~E~~~~----~r~~EFt~lE~e~~~~~~---~dl~~~~E~ll~~l~~~~~~ 262 (595)
|+++ .-|.--+|..-|||-+++ +|-.+|.|=|.-. |.+. .+-+.-+-++++++.. +++
T Consensus 269 ~reL-----PlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHI-FCt~~Qi~~Eik~~l~fl~~vY~-~fg 333 (560)
T KOG1637|consen 269 YREL-----PLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHI-FCTPDQVKEEIKGCLDFLDYVYG-VFG 333 (560)
T ss_pred HhhC-----CccccCcceeeeccccccccccceeeeecccCceE-EecCccHHHHHHHHHHHHHHHHH-hcc
Confidence 2222 246667899999998654 5666999999876 5554 4444444455556655 444
No 242
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=40.45 E-value=2.2e+02 Score=24.61 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=42.8
Q ss_pred eEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEee
Q psy3762 33 IIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILN 103 (595)
Q Consensus 33 l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls 103 (595)
--=+.|.||....|.++.....++++ -..|+.|++|.++-.....- ..+.--+.+-+++|+.
T Consensus 39 RyR~~lSDG~~~~~amLatqln~lv~-~g~l~~~siirl~~y~~n~v--------~~~k~iiiil~leVv~ 100 (101)
T PF04057_consen 39 RYRLVLSDGVHSIQAMLATQLNHLVE-SGELQKGSIIRLKQYTCNTV--------KNGKKIIIILDLEVVQ 100 (101)
T ss_dssp EEEEEEESSSEEEEEEESGGGHHHHH-TTSSSTT-EEEEEEEEEEES--------TTSSEEEEEEEEEEEE
T ss_pred eEEEEEEChHHHHHHHhHHHhHHHHh-cCCcccCCEEEEeEEEEeec--------cCCCEEEEEEeeEEEe
Confidence 33478999999999999876433332 24699999999998766431 1144557888888875
No 243
>PRK07217 replication factor A; Reviewed
Probab=38.69 E-value=2.5e+02 Score=29.66 Aligned_cols=84 Identities=13% Similarity=0.064 Sum_probs=60.6
Q ss_pred ccccccccCCCEEEEEEEEEeEe--ccCCeEE-EEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCC
Q psy3762 6 CGNITEKLLDQVISLCGWVHRKR--NHGGIIF-IDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKT 82 (595)
Q Consensus 6 ~~~l~~~~~g~~V~i~GwV~~~R--~~g~l~F-i~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 82 (595)
|.+|+. .++.|+|.|+|...= .++.+.. -.|-|.+|+|..+.=.+. ....|..|++|.+.+.++..
T Consensus 75 I~Di~~--~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG~IkfT~W~~s-----~~~~leeGd~~rI~na~v~e---- 143 (311)
T PRK07217 75 IADIDE--PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETGTIKFTKWAKS-----DLPELEEGKSYLLKNVVTDE---- 143 (311)
T ss_pred eeecCC--CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCceEEEEEccCC-----CCCcccCCCEEEEEeEEEee----
Confidence 445542 356799999998763 2456666 678899999998865431 12458999999999987764
Q ss_pred CCCCcCCccEEEEEeeEEEeecC
Q psy3762 83 NNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 83 ~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
-.|.++|.+.+...+...
T Consensus 144 -----y~G~~~lnlg~~t~I~~~ 161 (311)
T PRK07217 144 -----YQGRFSVKLNRTTSIEEL 161 (311)
T ss_pred -----ECCEEEEEeCCceEEEeC
Confidence 467899999887766654
No 244
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=38.26 E-value=1.3e+02 Score=28.33 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=44.4
Q ss_pred cCCCEEEEEEEEE--eEeccC---CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEE
Q psy3762 13 LLDQVISLCGWVH--RKRNHG---GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVC 76 (595)
Q Consensus 13 ~~g~~V~i~GwV~--~~R~~g---~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~ 76 (595)
..++.+++-|.|. |+...+ .+.| .+.|+...+.|....-.|++ .+.|.-|-++|.+.
T Consensus 49 ~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilPDl------FrEGqgVVaeG~~~ 110 (155)
T PRK13159 49 AGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNAATQVEYTGILPDL------FRDNQSVIANGRMQ 110 (155)
T ss_pred ccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCcEEEEEEccCCCcc------ccCCCeEEEEEEEc
Confidence 3468899999997 776654 3566 77899999999988765543 36789999999984
No 245
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=37.99 E-value=69 Score=38.30 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCC-C--C--CccccccccCCCCCeeeccCChHHHHHHHHh----hCC--CceE
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTP-E--G--ARDYLVPSRINPGEFFALPQSPQLFKQLLMV----ANF--DRYY 211 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-~--g--a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~----~g~--~rvf 211 (595)
....+.+|++|...||.|+-|-.+++... . + .......... ..+.=.|++|---.+=..+. .+. -++|
T Consensus 490 ~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~~~~i~l~NPi-s~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lF 568 (791)
T PRK00629 490 QRLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLNPEPLLLLNPI-SEELSVMRTSLLPGLLEAVAYNLNRGNKDVALF 568 (791)
T ss_pred HHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCCCCeEEEeCCC-chHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEE
Confidence 44567789999999999999999976311 0 0 0000000000 01111344443222222112 222 3899
Q ss_pred EEecceecCCCCCCCCc-ccccccccccc------------CCHHHHHHHHHHHHHHH
Q psy3762 212 QITKCFRDEDLRSDRQP-EFTQIDCETSF------------MNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 212 ~i~~~FR~E~~~~~r~~-EFt~lE~e~~~------------~~~~dl~~~~E~ll~~l 256 (595)
|||+||...+. .+ |-+.+=+-+++ .++.++...++.++..+
T Consensus 569 EiG~Vf~~~~~----~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l 622 (791)
T PRK00629 569 EIGRVFLPDGD----LPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEAL 622 (791)
T ss_pred eeeeeeCCCCC----CCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHc
Confidence 99999965310 12 33333222222 47788888888888644
No 246
>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding.
Probab=37.61 E-value=1.8e+02 Score=24.53 Aligned_cols=68 Identities=12% Similarity=0.009 Sum_probs=46.2
Q ss_pred EEEEeCCe-eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCCC
Q psy3762 36 IDLRDYTG-LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT 107 (595)
Q Consensus 36 i~LrD~~g-~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~~ 107 (595)
+.|-|..| .+|+.+.+.. ..+....|..|++..++-..+....+. .+.......|....-+.+.++.+
T Consensus 2 mvL~De~G~~I~A~I~~~~--~~~f~~~l~Eg~~y~i~~F~V~~~~~~--yr~t~h~y~I~f~~~T~V~~~~~ 70 (95)
T PF02721_consen 2 MVLVDEKGDKIQATIPKEL--VDKFKDSLKEGSWYTISNFTVSPNSGS--YRPTDHKYKINFMPNTKVTEIDP 70 (95)
T ss_pred EEEEecCCCEEEEEECHHH--HHHHHhhcccCCEEEeEeEEEEeCCCc--eeccCCCEEEEECCcCeEEECCC
Confidence 35778777 7999998653 234456789999999987655543322 23345677787777777777753
No 247
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=37.53 E-value=23 Score=35.87 Aligned_cols=57 Identities=21% Similarity=0.442 Sum_probs=41.6
Q ss_pred cccceeeEEecCEEEeecccccCCHHHHHHHHHHc-CCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCC
Q psy3762 476 IFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL-NIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554 (595)
Q Consensus 476 ~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~-g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~ 554 (595)
.++...++.++|+||. |-.-|... |++- -|..+=+.-|+|||.|.+-|.+|
T Consensus 121 AwGLGWEVWldGMEIT-----------QFTYFQQvGGi~~-----------------~pv~~EiTYGLERiamylQ~vd~ 172 (279)
T cd00733 121 AWGLGWEVWLDGMEVT-----------QFTYFQQVGGIPC-----------------KPISVEITYGLERIAMYLQGVDN 172 (279)
T ss_pred ccccccEEEECCeeee-----------eeeeeeeeCCeec-----------------cccceeeehhHHHHHHHHhCCCc
Confidence 4678899999999995 22223222 2221 35666789999999999999999
Q ss_pred cccccc
Q psy3762 555 IRDVIA 560 (595)
Q Consensus 555 IRdvi~ 560 (595)
|-|..-
T Consensus 173 v~dl~w 178 (279)
T cd00733 173 VYDIEW 178 (279)
T ss_pred eecccc
Confidence 998764
No 248
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=37.38 E-value=17 Score=37.91 Aligned_cols=40 Identities=35% Similarity=0.623 Sum_probs=28.1
Q ss_pred eeeEEecCE--EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHH
Q psy3762 480 AYDLIINGW--EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRL 545 (595)
Q Consensus 480 ~fDl~~~G~--Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRL 545 (595)
-|+++.+|. .|++|+. |..+++.+. .-.|-.||++++|||
T Consensus 270 vFe~~~~~~~~~ia~GGR-------------------------YD~L~~~fg-~~~~AvGfai~ld~L 311 (311)
T PF13393_consen 270 VFEVYAPGRGSPIAGGGR-------------------------YDNLLEQFG-KPIPAVGFAIGLDRL 311 (311)
T ss_dssp EEEEEETTSSSESEEEEE-------------------------ETTHHHHTT-SS-EEEEEEEEHHHH
T ss_pred EEEEEEcCCCceEecccC-------------------------hhHHHHHhC-CCCceEEEEEEeccC
Confidence 578888743 8999977 333455551 255889999999997
No 249
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=37.28 E-value=23 Score=35.94 Aligned_cols=58 Identities=24% Similarity=0.529 Sum_probs=42.3
Q ss_pred cccceeeEEecCEEEeecccccCCHHHHHHHHHHc-CCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCC
Q psy3762 476 IFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL-NIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554 (595)
Q Consensus 476 ~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~-g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~ 554 (595)
.++...++.++|+||. |-.-|... |++- -|..+=+.-|+|||.|.+-|.+|
T Consensus 125 AwGlGWEVWldGMEIT-----------QFTYFQQvGGi~~-----------------~pv~~EITYGLERiamylQ~vd~ 176 (283)
T PRK09348 125 AWGLGWEVWLDGMEVT-----------QFTYFQQVGGIEC-----------------KPVTGEITYGLERLAMYLQGVDN 176 (283)
T ss_pred ccccceEEEECCeeee-----------eeeeeeeeCCeec-----------------cccceeeehhHHHHHHHHhCCCc
Confidence 4678899999999995 22223222 2222 35666789999999999999999
Q ss_pred ccccccC
Q psy3762 555 IRDVIAF 561 (595)
Q Consensus 555 IRdvi~F 561 (595)
|-|+.-=
T Consensus 177 v~dl~w~ 183 (283)
T PRK09348 177 VYDLVWN 183 (283)
T ss_pred eeeeecC
Confidence 9998653
No 250
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.94 E-value=35 Score=27.05 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhCCCeeccC
Q psy3762 140 RLRYKVTMEVRKFLDSKKFIEIET 163 (595)
Q Consensus 140 ~~rs~i~~~iR~ff~~~gF~EV~T 163 (595)
+.|.+|++.||+||...|=++|.-
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAVLY 25 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEEEE
Confidence 468899999999999999777653
No 251
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=36.55 E-value=1.2e+02 Score=37.55 Aligned_cols=62 Identities=26% Similarity=0.450 Sum_probs=46.1
Q ss_pred CCEEEEEEEEEeEecc-----C-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 15 DQVISLCGWVHRKRNH-----G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 15 g~~V~i~GwV~~~R~~-----g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
+..+++.|-|..+|.. | +++|+.|.|.+|.+-+|+-+.. ..+.-..+..+..+.|+|.+...
T Consensus 976 ~~~~~~~~~i~~vr~~~tk~~G~~~~f~tl~D~~g~~e~v~f~~~--~~~~~~~l~~~~~~~v~g~v~~~ 1043 (1139)
T COG0587 976 GRRVVLAGGIVAVRQRPTKAKGNKMAFLTLEDETGILEVVVFPSE--YERYRRLLLEGRLLIVKGKVQRR 1043 (1139)
T ss_pred cceeEEEEEEEEEEEeeccCCCCEEEEEEEecCCCcEEEEEcHHH--HHHHHHHhccCcEEEEEEEEEec
Confidence 3347788888777763 3 3999999999999999987652 23333456667899999999874
No 252
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=36.50 E-value=74 Score=37.50 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecC
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKS 169 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~ 169 (595)
..+.+.+|++|...||.|+-|-.+++.
T Consensus 401 ~~~~~~ir~~L~~~Gf~Evitysf~s~ 427 (704)
T CHL00192 401 YNTRDKIRSYLRNLGLTELIHYSLVKQ 427 (704)
T ss_pred HHHHHHHHHHHHhCCCceEecccccCh
Confidence 456777899999999999999999764
No 253
>COG3689 Predicted membrane protein [Function unknown]
Probab=36.14 E-value=96 Score=31.74 Aligned_cols=90 Identities=11% Similarity=0.106 Sum_probs=57.2
Q ss_pred cccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHH---HHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCc
Q psy3762 11 EKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIK---IYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNL 87 (595)
Q Consensus 11 ~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~---~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~ 87 (595)
++..|++|.+.|+|-+=-..++--++.. +-|.+=|+++...-. ..+...+++..+.|.|+|++...--. ..
T Consensus 171 def~Gk~Ie~tGFVy~~~~~~~N~lfla--RFgiicC~ADa~vygl~v~~~~~~~y~ndtWltvkGtl~~e~~~----~~ 244 (271)
T COG3689 171 DEFAGKKIEFTGFVYNDESFPKNYLFLA--RFGIICCAADAGVYGLLVELDNQTDYKNDTWLTVKGTLSSEYLS----DF 244 (271)
T ss_pred hhhcCceEEEEEEEECCCCCCcceeehh--hhheeeeeccceeEEEEEEccccccCCCCceEEEEeEEEeeecC----ch
Confidence 4567999999999987444443222222 345566666543210 01123568999999999999864321 12
Q ss_pred CCccEEEEEeeEEEeecCC
Q psy3762 88 ISGNIEILCRELKILNSSI 106 (595)
Q Consensus 88 ~~g~iEl~v~~i~vls~~~ 106 (595)
+..-.-|+|.+++++-++.
T Consensus 245 ~~~ipvi~v~sv~~I~kP~ 263 (271)
T COG3689 245 KKRIPVIEVDSVEVIPKPA 263 (271)
T ss_pred hhcCcEEEeeeeeecCCCC
Confidence 3345678999999998765
No 254
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=35.96 E-value=23 Score=42.88 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=43.5
Q ss_pred cccceeeEEecCEEEeecccccCCHHHHHHHHHHcC-CChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCC
Q psy3762 476 IFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLN-IDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554 (595)
Q Consensus 476 ~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g-~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~ 554 (595)
.++..+++.+||+||. |-.-|...| ++- -|..+=+.-|+|||.|.+-|.+|
T Consensus 126 a~glgwevw~~gmeit-----------qftyfqq~gg~~~-----------------~~~~~eitygler~~m~~q~~~~ 177 (1000)
T PRK14908 126 AWGLGWEVWLDGMEIT-----------QFTYFQQAGGKPL-----------------DPISGEITYGIERIAMYLQKVNH 177 (1000)
T ss_pred ccccccEEEECCeeee-----------eeeeehhcCCeec-----------------cccceeeeccHHHHHHHHhCCCe
Confidence 5688899999999995 333333322 221 46677799999999999999999
Q ss_pred ccccccC
Q psy3762 555 IRDVIAF 561 (595)
Q Consensus 555 IRdvi~F 561 (595)
|-|+..=
T Consensus 178 ~~~~~~~ 184 (1000)
T PRK14908 178 FKDIAWN 184 (1000)
T ss_pred eeeeecC
Confidence 9998754
No 255
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=35.26 E-value=62 Score=38.73 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=20.5
Q ss_pred HHHHHHhhhCCCeeccCceeecC
Q psy3762 147 MEVRKFLDSKKFIEIETPILSKS 169 (595)
Q Consensus 147 ~~iR~ff~~~gF~EV~TPiL~~~ 169 (595)
+.+|++|...||.|+-|-.+++.
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~ 520 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSS 520 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCH
Confidence 57899999999999999999764
No 256
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=34.49 E-value=1.6e+02 Score=25.62 Aligned_cols=41 Identities=5% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEe
Q psy3762 57 YKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKIL 102 (595)
Q Consensus 57 ~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vl 102 (595)
-.+..+|+.|+.|.|.|.+...... | .-..+-|+++.++.+
T Consensus 62 ~~lt~~i~~Gs~i~v~GFla~~~~~--s---g~~~lvlha~qi~~i 102 (103)
T COG2965 62 EELTQSITVGSYILVVGFLACHKRR--S---GLSKLVLHAEQIEFI 102 (103)
T ss_pred hhhhhccccccEEEEEEEEEeeccc--C---CccEEEEEeeEEEec
Confidence 3455679999999999999875321 1 223567777777654
No 257
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=33.41 E-value=2.6e+02 Score=35.92 Aligned_cols=80 Identities=14% Similarity=0.241 Sum_probs=53.5
Q ss_pred CCCEEEEEEEEEeEec----cCC-eEEEEEEeCCeeEE--EEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCC
Q psy3762 14 LDQVISLCGWVHRKRN----HGG-IIFIDLRDYTGLVQ--IVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTN 86 (595)
Q Consensus 14 ~g~~V~i~GwV~~~R~----~g~-l~Fi~LrD~~g~lQ--vv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~ 86 (595)
.+..|+|.|.|-.+-. .|+ +.=+.|.|.++.+- .....+ +..+....|+.|+.|.|+|.+....
T Consensus 235 ~~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~--~~~~~~~~~~~g~~v~~~g~~~~d~------- 305 (1437)
T PRK00448 235 EERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDK--EDLKKFDEIKKGDWVKVRGSVQNDT------- 305 (1437)
T ss_pred cCCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCc--chhHHHhcCCCCCEEEEEEEEeccC-------
Confidence 3467999999966532 343 44468899988644 444322 2234557799999999999997642
Q ss_pred cCCccEEEEEeeEEEee
Q psy3762 87 LISGNIEILCRELKILN 103 (595)
Q Consensus 87 ~~~g~iEl~v~~i~vls 103 (595)
-.+++.+.+..+..+.
T Consensus 306 -~~~~~~~~~~~~~~~~ 321 (1437)
T PRK00448 306 -FTRDLVMNAQDINEIK 321 (1437)
T ss_pred -CCCceEEEeeeeeecC
Confidence 2457777777776543
No 258
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=33.35 E-value=40 Score=28.36 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=35.6
Q ss_pred cCCCEEEEEEEEEeE---eccCCeEEEEEEeCCeeEEEEECCCc-HHHHHHHhcCCCCcEEEEEeE
Q psy3762 13 LLDQVISLCGWVHRK---RNHGGIIFIDLRDYTGLVQIVFDPND-IKIYKIAKIIRNEFCLQIIGK 74 (595)
Q Consensus 13 ~~g~~V~i~GwV~~~---R~~g~l~Fi~LrD~~g~lQvv~~~~~-~~~~~~~~~l~~es~V~V~G~ 74 (595)
.-||-|.|...+... |.. +.+..-+..+.+++.+.... ..+-.++.+++.||.|.|+|=
T Consensus 31 ~pGQ~v~v~~~~~~~~~~R~y---S~~s~~~~~~~~~~~ik~~~~G~~S~~L~~l~~Gd~v~i~gP 93 (99)
T PF00970_consen 31 KPGQFVSVRVPINGKQVSRPY---SPASSPDDKGYLEFAIKRYPNGRVSRYLHQLKPGDEVEIRGP 93 (99)
T ss_dssp TTT-EEEEEEEETTEEEEEEE---EBCSSTTSSSEEEEEEEECTTSHHHHHHHTSCTTSEEEEEEE
T ss_pred CcceEEEEEEccCCcceecce---eEeeecCCCCcEEEEEEeccCCHHHHHHHhCCCCCEEEEEEc
Confidence 458888888884322 221 11122233456777776442 135567888999999999984
No 259
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=32.65 E-value=1.8e+02 Score=28.16 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=37.1
Q ss_pred EEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEe---eEEEeecC
Q psy3762 45 VQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCR---ELKILNSS 105 (595)
Q Consensus 45 lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~---~i~vls~~ 105 (595)
+.|++=....+ ...+.|+.||.|.|+|.+..+.-...+. .....+||.+. ++++|++.
T Consensus 56 ~~V~~fgk~Ae--~~~~~L~KGs~V~VeGrL~~~~yedkdG-~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 56 HRVVLFGKLAE--VAGEYLRKGSQVYIEGQLRTRKWTDQSG-QDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred EEEEEehhHHH--HHHHhcCCCCEEEEEEEEEeccccCCCC-CEEEEEEEEEecCCcEEEccCC
Confidence 56666544222 2356699999999999998764321111 12235788877 78888754
No 260
>KOG2298|consensus
Probab=32.16 E-value=13 Score=40.92 Aligned_cols=31 Identities=39% Similarity=0.486 Sum_probs=23.7
Q ss_pred eEEEecceecCCCCCC---CCccccccccccccCC
Q psy3762 210 YYQITKCFRDEDLRSD---RQPEFTQIDCETSFMN 241 (595)
Q Consensus 210 vf~i~~~FR~E~~~~~---r~~EFt~lE~e~~~~~ 241 (595)
.-|||++||||=+... |-.||||.|+|- |++
T Consensus 212 ~AqiG~~fRNEISpRsGLlRvrEF~maEIEH-Fvd 245 (599)
T KOG2298|consen 212 SAQIGKSFRNEISPRSGLLRVREFTMAEIEH-FVD 245 (599)
T ss_pred HHHhchHhhhccCcccCceeEEEeehHHhhc-cCC
Confidence 5789999999965433 445999999984 554
No 261
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=31.39 E-value=1.6e+02 Score=28.42 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=52.8
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEEE-eC-------------CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEE
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDLR-DY-------------TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKV 75 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~Lr-D~-------------~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v 75 (595)
..|+|.|||-+ +|.. | .++-+.|- +. +..+.|++=....+ ...+.|+.|+.|.|+|.+
T Consensus 7 N~V~LiGrLg~DPElR~t~nG~~va~fslAvn~~~kd~~~Ge~~e~t~w~~Vv~wgk~Ae--~v~~~L~KG~~V~VeGrL 84 (175)
T PRK13732 7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAE--VAGEYLRKGAQVYIEGQL 84 (175)
T ss_pred eEEEEEEEecCCCEEEEcCCCCEEEEEEEEEcCccccCCCCceecceeEEEEEEecHHHH--HHHHhcCCCCEEEEEEEE
Confidence 36899999975 4442 4 33433332 11 11355665544222 234569999999999999
Q ss_pred EeCCCCCCCCCcCCccEEEEEe---eEEEeecCC
Q psy3762 76 CSRPNKTNNTNLISGNIEILCR---ELKILNSSI 106 (595)
Q Consensus 76 ~~~~~~~~~~~~~~g~iEl~v~---~i~vls~~~ 106 (595)
..+.-.. + ..+....||.|+ ++.+|++..
T Consensus 85 ~~r~ye~-d-G~kr~~~eIiv~~~g~~~fL~~~~ 116 (175)
T PRK13732 85 RTRSWED-N-GITRYVTEILVKTTGTMQMLGRAP 116 (175)
T ss_pred EeeeEcc-C-CeEEEEEEEEEeecCeEEEecCCC
Confidence 8763211 1 122346899998 899998763
No 262
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=29.99 E-value=34 Score=34.95 Aligned_cols=58 Identities=21% Similarity=0.437 Sum_probs=41.6
Q ss_pred cccceeeEEecCEEEeecccccCCHHHHHHHHHHc-CCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCC
Q psy3762 476 IFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL-NIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554 (595)
Q Consensus 476 ~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~-g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~ 554 (595)
.++...++.+||+||. |-.-|... |++- -|..+=+.-|+|||.|.+-|.+|
T Consensus 122 AwGlGWEVWldGMEIT-----------QFTYFQQvGGi~~-----------------~pv~~EITYGLERiaMylQ~vd~ 173 (293)
T TIGR00388 122 AWGLGWEVWLDGMEVT-----------QFTYFQQVGGLEC-----------------KPVSVEITYGLERLAMYIQGVEN 173 (293)
T ss_pred ccccccEEEECCeeee-----------eeeeeeeeCCeec-----------------cccceeeehhHHHHHHHHhCCCe
Confidence 4678899999999995 22222222 2221 24556688999999999999999
Q ss_pred ccccccC
Q psy3762 555 IRDVIAF 561 (595)
Q Consensus 555 IRdvi~F 561 (595)
|-|..-=
T Consensus 174 v~dl~w~ 180 (293)
T TIGR00388 174 VYDLEWS 180 (293)
T ss_pred eeeeeec
Confidence 9997654
No 263
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=29.85 E-value=1.1e+02 Score=23.82 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=31.9
Q ss_pred EEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--H-HHHHHhcCCCCcEEEEE
Q psy3762 19 SLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--K-IYKIAKIIRNEFCLQII 72 (595)
Q Consensus 19 ~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~-~~~~~~~l~~es~V~V~ 72 (595)
.+.|+|.++...| +|+.|-++ +...++.... + .-+....++.|+.|.+.
T Consensus 3 ~v~g~V~~v~~~G--v~V~l~~~---~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG--VFVTLGRG---VDARVRVSELSDSYLKDWKKRFKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc--EEEEeCCC---CEEEEEHHHCCchhhcCHhhccCCCCEEEEE
Confidence 4789999999888 89999754 5555543211 1 11123447889988875
No 264
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=29.55 E-value=98 Score=24.15 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=32.8
Q ss_pred EEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--H-HHHHHhcCCCCcEEEEE
Q psy3762 19 SLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--K-IYKIAKIIRNEFCLQII 72 (595)
Q Consensus 19 ~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~-~~~~~~~l~~es~V~V~ 72 (595)
.+.|+|.++...| +|+.|-++ ++..++.+.. + ..+.-..++.|+.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~V~l~~~---~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG--CIVSFYNN---VKGFLPKSELSEAFIKDPEEHFRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc--EEEEECCC---CEEEEEHHHcChhhcCCHHHcccCCCEEEEE
Confidence 3789999999888 88888543 6777664321 1 11122447889988876
No 265
>PLN02900 alanyl-tRNA synthetase
Probab=29.20 E-value=1.3e+02 Score=36.72 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHh--------hCCCceEEEe
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMV--------ANFDRYYQIT 214 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~--------~g~~rvf~i~ 214 (595)
++|-+.+-+||.++|.+.|..--|.+... ...++..-++..++...+. +...|+=..-
T Consensus 14 ~eiR~~Fl~FF~~~gH~~v~s~slvp~~d--------------ptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Q 79 (936)
T PLN02900 14 DRIRRTFLSFFESKGHTFLPSSPLVPVDD--------------PTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQ 79 (936)
T ss_pred HHHHHHHHHHHHhCCCEEeCCCCcCCCCC--------------CCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeec
Confidence 45556667899999999988766655211 1112222233333333221 0235788899
Q ss_pred cceec----C---CCC-CCCCc-cccccccccccCCH--HHHHHHHHHHHHHH
Q psy3762 215 KCFRD----E---DLR-SDRQP-EFTQIDCETSFMNE--EEIRNLFEEMIRVI 256 (595)
Q Consensus 215 ~~FR~----E---~~~-~~r~~-EFt~lE~e~~~~~~--~dl~~~~E~ll~~l 256 (595)
+|.|. . +++ +.||+ =|-||-= .+|.+| ++.+..+-+++-..
T Consensus 80 kCiR~gGKHnDlenVG~t~rHhTfFEMlGn-fSfgdYfK~eaI~~awe~lT~~ 131 (936)
T PLN02900 80 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKKEAIGWAWELLTKV 131 (936)
T ss_pred ccccCCCCCCCHhhccCCCCchHHHHhhhc-cchhhhhHHHHHHHHHHHHHHh
Confidence 99999 3 343 66777 5555533 467776 78888888877654
No 266
>KOG2783|consensus
Probab=28.88 E-value=1.1e+02 Score=33.20 Aligned_cols=55 Identities=22% Similarity=0.488 Sum_probs=42.5
Q ss_pred eeeEEecCE--EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccc
Q psy3762 480 AYDLIINGW--EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRD 557 (595)
Q Consensus 480 ~fDl~~~G~--Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRd 557 (595)
.-++.+.|. |+.|.+. .....++..|+.. .-+|+ ||||+|||.|+|.++++||=
T Consensus 263 eleI~~~~~wlevlgcgv------i~~~il~~ag~~~-----~igwa-------------fglgLerLAMll~~IpDiRl 318 (436)
T KOG2783|consen 263 ELEIYFKGEWLEVLGCGV------MRQRLLKRAGLNN-----YIGWA-------------FGLGLERLAMLLFDIPDIRL 318 (436)
T ss_pred EEEEEecCCcHhhhccch------hHHHHHhhccccc-----eeeee-------------eeccHHHHHHHHhcCcchhe
Confidence 345566664 9999988 6667777778752 34565 99999999999999999995
Q ss_pred c
Q psy3762 558 V 558 (595)
Q Consensus 558 v 558 (595)
.
T Consensus 319 f 319 (436)
T KOG2783|consen 319 F 319 (436)
T ss_pred e
Confidence 4
No 267
>cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA). BRCA2DBD OB1 binds DNA weakly.
Probab=27.58 E-value=2.5e+02 Score=24.54 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=37.2
Q ss_pred EEEEEeEecc----CCeEEEEEEeCCeeEEEEECCCcHHHHHHH--hcCCCCcEEEEEe
Q psy3762 21 CGWVHRKRNH----GGIIFIDLRDYTGLVQIVFDPNDIKIYKIA--KIIRNEFCLQIIG 73 (595)
Q Consensus 21 ~GwV~~~R~~----g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~--~~l~~es~V~V~G 73 (595)
.-.|.+++.. +...-+.|.||-..+++.++... .+.+ .+|+.|+-+.|.|
T Consensus 6 VL~Vs~I~~~~~~~~~~~~lEltDGWYsi~a~lD~~L---~~~l~~gkl~vGqKL~i~G 61 (100)
T cd04493 6 VLCVSGINSEERLSPHMPIIELTDGWYSIRAQLDPPL---TNLVRKGKLRVGQKLRICG 61 (100)
T ss_pred EEEEEEEeeccCCCCcccEEEEecCeEEEEEEeCHHH---HHHHHcCCeecccEEEEEC
Confidence 3455556543 34678999999999999998753 3444 4599999999998
No 268
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=27.03 E-value=31 Score=39.36 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.3
Q ss_pred ccceeccHHHHHHHHcCC
Q psy3762 535 HGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 535 h~G~glGlDRLvm~l~g~ 552 (595)
|.||++|+|||++++...
T Consensus 442 ~~Gfa~gieRli~~l~e~ 459 (563)
T TIGR00418 442 HRAILGSIERFIAILLEK 459 (563)
T ss_pred EeeccCcHHHHHHHHHHh
Confidence 579999999999988643
No 269
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=26.61 E-value=2e+02 Score=27.59 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=37.6
Q ss_pred EEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEe---eEEEeecC
Q psy3762 45 VQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCR---ELKILNSS 105 (595)
Q Consensus 45 lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~---~i~vls~~ 105 (595)
+.|++=....+ ...+.|+.|+.|.|+|.+..+.-. .+ ......+||.|+ .+.+|+..
T Consensus 55 ~~Vv~fgk~Ae--~v~~~l~KGs~V~VeGrLr~~~y~-kd-G~~r~~~eVvvd~~g~v~~L~~~ 114 (172)
T PRK05733 55 HRVSLFGKVAE--IAGEYLRKGSQVYIEGKLQTREWE-KD-GIKRYTTEIVVDMQGTMQLLGGR 114 (172)
T ss_pred EEEEEehHHHH--HHHHHhCCCCEEEEEEEEEeCcEe-cC-CEEEEEEEEEEeecCeEEECcCC
Confidence 66665544322 345669999999999999887432 11 122346889998 78888743
No 270
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=26.23 E-value=5.8e+02 Score=24.35 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=48.6
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEEEe------C--------CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEE
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDLRD------Y--------TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKV 75 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~LrD------~--------~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v 75 (595)
..|+|.|+|-+ +|.. | .++-+.|-- . +..+.|++=.+. ..-...+.|+.|+.|.|+|.+
T Consensus 6 N~V~LiGrLg~DPElR~t~sG~~v~~fsVAvn~~~kd~~~Ge~~e~T~w~~Vv~fg~~-~Ae~~~~~LkKG~~V~VeGrL 84 (166)
T PRK06341 6 NKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHRVVIFNEG-LCKVAEQYLKKGAKVYIEGQL 84 (166)
T ss_pred eEEEEEEEecCCCEEEEcCCCCEEEEEEEEEccceecCCCCcccccceEEEEEEeChH-HHHHHHHhcCCCCEEEEEEEE
Confidence 46889999876 4543 3 233222221 1 123566654321 112234679999999999999
Q ss_pred EeCCCCCCCCCcCCccEEEEEee----EEEeecC
Q psy3762 76 CSRPNKTNNTNLISGNIEILCRE----LKILNSS 105 (595)
Q Consensus 76 ~~~~~~~~~~~~~~g~iEl~v~~----i~vls~~ 105 (595)
..+.-...+. .+...+||.+++ ++.|++.
T Consensus 85 ~~r~w~dkdG-~~r~~~eIiv~~~~~~l~~l~~~ 117 (166)
T PRK06341 85 QTRKWTDQSG-VERYSTEVVLQGFNSTLTMLDGR 117 (166)
T ss_pred EeCcEECCCC-CEEEEEEEEEEecccceEEcccC
Confidence 8763211111 122357888865 4666643
No 271
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=26.18 E-value=76 Score=35.77 Aligned_cols=48 Identities=17% Similarity=0.431 Sum_probs=31.3
Q ss_pred ceEEEecceecCCC-CCCCCcccccccccc--ccCCHHHHHHHHHHHHHHH
Q psy3762 209 RYYQITKCFRDEDL-RSDRQPEFTQIDCET--SFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 209 rvf~i~~~FR~E~~-~~~r~~EFt~lE~e~--~~~~~~dl~~~~E~ll~~l 256 (595)
|+|+||+|||.+.. ...|.-.+.+..+-. ...++.|+...++.+++.+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 89999999988642 333333554443212 1246889999999988754
No 272
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=24.36 E-value=30 Score=41.83 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=24.8
Q ss_pred CccceeccHHHHHHHHcCCCCccccccCCC
Q psy3762 534 PHGGIAFGLDRLITIMTGSKSIRDVIAFPK 563 (595)
Q Consensus 534 Ph~G~glGlDRLvm~l~g~~~IRdvi~FPr 563 (595)
+|-=-|+|||||++++-|.+|+=|+ .|+-
T Consensus 235 k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ 263 (902)
T TIGR03683 235 KIVDTGYGLERFVWASQGTPTAYDA-IFPE 263 (902)
T ss_pred CceecCCCHHHHHHHHcCCCchHHH-HHHH
Confidence 4556799999999999999999999 6653
No 273
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=23.40 E-value=1.1e+02 Score=34.14 Aligned_cols=64 Identities=27% Similarity=0.265 Sum_probs=41.7
Q ss_pred ccCCCEEEEEEEEEeEeccCCeEEEEEE-eCCeeEEEE----ECCCcHHHHHHHhcCCCCcEEEEEeEE
Q psy3762 12 KLLDQVISLCGWVHRKRNHGGIIFIDLR-DYTGLVQIV----FDPNDIKIYKIAKIIRNEFCLQIIGKV 75 (595)
Q Consensus 12 ~~~g~~V~i~GwV~~~R~~g~l~Fi~Lr-D~~g~lQvv----~~~~~~~~~~~~~~l~~es~V~V~G~v 75 (595)
+.++..++|||-|.+.=.-|+=-|.+-. ||+-++||+ ++.++++..+.+++-+.=-.|.+.+-+
T Consensus 371 ~kLnRPiRVCGMVkNeGEPGGGPFwv~~~dG~~SLQIvEssQId~~~~~q~~if~~~THFNPVDLVCgv 439 (513)
T PF14134_consen 371 EKLNRPIRVCGMVKNEGEPGGGPFWVKNEDGTVSLQIVESSQIDMSNPEQKEIFKNSTHFNPVDLVCGV 439 (513)
T ss_pred HHcCCCceeeeccccCCCCCCCCeEEECCCCCEeeeeehhhhcCCCCHHHHHHHHcCCCCCccceEeec
Confidence 3568889999999999888877888776 667799999 444454333333333333334444444
No 274
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=23.24 E-value=1.8e+02 Score=35.18 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHh---hCCCceEEEecceec
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMV---ANFDRYYQITKCFRD 219 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~---~g~~rvf~i~~~FR~ 219 (595)
++|-+.+-+||.++|.+.|..--+.+.. ....++..-+...++...+. ....|+=..-+|.|.
T Consensus 5 ~eiR~~fl~fF~~~~H~~v~s~~lvp~~--------------d~~llf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~ 70 (865)
T PRK00252 5 AEIRQKFLDFFESKGHTVVPSASLVPKN--------------DPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCIRT 70 (865)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcCCCC--------------CCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc
Confidence 4566778899999998888755554411 11122223333344443221 123688889999999
Q ss_pred CCC----CCCCCc-cccccccccccCCH--HHHHHHHHHHHHHH
Q psy3762 220 EDL----RSDRQP-EFTQIDCETSFMNE--EEIRNLFEEMIRVI 256 (595)
Q Consensus 220 E~~----~~~r~~-EFt~lE~e~~~~~~--~dl~~~~E~ll~~l 256 (595)
.+. .+.||+ =|.||-= .+|.+| ++.++.+-+|+-.+
T Consensus 71 nDld~VG~t~rHhTfFEMlGn-~sfgdYfK~eai~~awe~lt~~ 113 (865)
T PRK00252 71 NDLENVGYTARHHTFFEMLGN-FSFGDYFKEEAIEWAWELLTSV 113 (865)
T ss_pred cchhhccCCCCchHHHHHhcc-cchhhhhHHHHHHHHHHHHHHH
Confidence 653 366777 5666543 467776 89999999988553
No 275
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=22.73 E-value=1.1e+02 Score=34.12 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=50.7
Q ss_pred CCCEEEEEEEEEeEeccC-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 14 LDQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 14 ~g~~V~i~GwV~~~R~~g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
-|+.|+|.|-|..+|.-. +=.-+.+-|-+|.+++++.+ +.+..+.+..+-..-+|.+.|.+..+
T Consensus 137 ~g~dv~Iig~v~~~r~t~~gh~ii~~ed~tG~v~vvl~k-~~e~~~~~~dvl~d~vig~~g~~t~~ 201 (481)
T COG1311 137 GGSDVKIIGEVNDVRETKNGHFIISLEDTTGVVTVVLGK-DREAGRFVVDVLFDEVIGVSGPVTPR 201 (481)
T ss_pred cCCCcEEEEEEccceeeecccEEEEcccccceEEEEecc-chhhhhhHHhhcCCccccccCccCCc
Confidence 355699999999999875 32346899999999999998 44566666677888899999998765
No 276
>KOG0480|consensus
Probab=22.64 E-value=2e+02 Score=33.39 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=26.7
Q ss_pred cccccccccccCCCEEEEEEEEEeEecc----CCeEEE
Q psy3762 3 THYCGNITEKLLDQVISLCGWVHRKRNH----GGIIFI 36 (595)
Q Consensus 3 t~~~~~l~~~~~g~~V~i~GwV~~~R~~----g~l~Fi 36 (595)
.|.+.+|+.+.+|+-|+|+|-|.+...- -+.+|+
T Consensus 122 ~~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~ 159 (764)
T KOG0480|consen 122 RHKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFL 159 (764)
T ss_pred ccccccccHhhhcceEEEEEEEEEeecccceeeeeEEE
Confidence 4789999999999999999988766542 255663
No 277
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=22.04 E-value=36 Score=41.14 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=0.0
Q ss_pred eccHHHHHHHHcCCCCccccccCC
Q psy3762 539 AFGLDRLITIMTGSKSIRDVIAFP 562 (595)
Q Consensus 539 glGlDRLvm~l~g~~~IRdvi~FP 562 (595)
|+|||||++++-|.+|+=|+ .|+
T Consensus 236 G~GLER~~~v~qg~~t~ydt-~f~ 258 (900)
T PRK13902 236 GYGLERIAWASQGTPTAYDA-IFG 258 (900)
T ss_pred CcCHHHHHHHHcCCCchHHH-HHH
No 278
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=22.03 E-value=1.6e+02 Score=28.89 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=40.1
Q ss_pred EEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 17 VISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
..+|.|||--+- .+..+|.-...+..+||.++.. ..++.||.|.++|.+..
T Consensus 39 ~~tiEGrVvEV~--~~~i~iesk~yn~~v~i~~d~~--------~nvKVGD~VKaTG~m~r 89 (213)
T PRK06763 39 FSTIEGRVVEVD--NGVIVIKSKQYEEPVSVYIDSL--------SNVKVGDEVKATGSMMR 89 (213)
T ss_pred cceeeeEEEEEe--CCEEEEEeccCCCceEEEecCC--------CCcccCcEEEEchHHHH
Confidence 358999998875 4556777777777899998754 45899999999998755
No 279
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=21.88 E-value=58 Score=32.94 Aligned_cols=57 Identities=23% Similarity=0.515 Sum_probs=41.4
Q ss_pred cccceeeEEecCEEEeecccccCCHHHHHHHHHHc-CCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCC
Q psy3762 476 IFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL-NIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554 (595)
Q Consensus 476 ~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~-g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~ 554 (595)
..+...++.++|+||. |-.-|... |++- -|-.+-+--|+|||.|.+-|.+|
T Consensus 126 awGlGWEVWldGMEvT-----------QFTYFQQvGGiec-----------------~pV~~EITYGlERlAmYiQ~vdn 177 (298)
T COG0752 126 AWGLGWEVWLDGMEVT-----------QFTYFQQVGGLEC-----------------KPVSGEITYGLERLAMYIQGVDN 177 (298)
T ss_pred ccccceeEEEcCeeee-----------eeehhhhhCCeec-----------------cceeeeeehhHHHHHHHHhCccc
Confidence 4677899999999985 33333332 2322 23455688899999999999999
Q ss_pred cccccc
Q psy3762 555 IRDVIA 560 (595)
Q Consensus 555 IRdvi~ 560 (595)
|-|+.-
T Consensus 178 Vydl~W 183 (298)
T COG0752 178 VYDLEW 183 (298)
T ss_pred eeEEee
Confidence 999865
No 280
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=21.24 E-value=81 Score=36.04 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecC----
Q psy3762 145 VTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDE---- 220 (595)
Q Consensus 145 i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E---- 220 (595)
|-+.+-+||.++|.+.|..--|.+..... -+.+..-...=+.++|... ......|+=..-+|.|..
T Consensus 2 iR~~fl~fF~~~gH~~v~s~~lvp~~d~~--llf~~Agm~~fkp~f~g~~--------~~p~~~r~~~~Q~CiR~~Gkhn 71 (552)
T PF01411_consen 2 IREKFLDFFEKKGHTIVPSSSLVPRWDPT--LLFTNAGMNQFKPYFLGGE--------VPPPANRLVSSQKCIRTGGKHN 71 (552)
T ss_dssp HHHHHHHHHHTTT-EEE----SS-TT-TT--BSS--SGGGGGCCCCTTSS--------S--SSSCEEEEEEEE-EETTEE
T ss_pred HHHHHHHHHHHCCCEEeccCCcccCCCCC--ceeeHhhHHHHHHHhcCCC--------CCCCCCcccccceeeccCCCcc
Confidence 44567789999999988866555421111 0000000000011222221 113347999999999998
Q ss_pred CC----CCCCCc-cccccccccccCCH--HHHHHHHHHHHHHH
Q psy3762 221 DL----RSDRQP-EFTQIDCETSFMNE--EEIRNLFEEMIRVI 256 (595)
Q Consensus 221 ~~----~~~r~~-EFt~lE~e~~~~~~--~dl~~~~E~ll~~l 256 (595)
+. .+.||+ =|.||- -.+|.+| ++.+..+.+++...
T Consensus 72 Dld~VG~t~rH~T~FEMlG-n~sfgdYfK~eai~~awe~lt~~ 113 (552)
T PF01411_consen 72 DLDNVGRTGRHHTFFEMLG-NFSFGDYFKEEAIEYAWEFLTEV 113 (552)
T ss_dssp CGGGTTTSSS--SEEEEEE-EEEECSS-HHHHHHHHHHHHHCT
T ss_pred hhhhcCCCceEeeehhhcc-ccccccccHHHHHHHHHHHHHhh
Confidence 43 367777 666664 3467776 88888888887744
No 281
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.09 E-value=1.6e+02 Score=23.57 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=32.5
Q ss_pred EEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH-----HHHHHHhcCCCCcEEEEE
Q psy3762 19 SLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI-----KIYKIAKIIRNEFCLQII 72 (595)
Q Consensus 19 ~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~-----~~~~~~~~l~~es~V~V~ 72 (595)
.|.|.|.++-..| +|+.|.++ +...++.... ..-+..+.++.|+.|.+.
T Consensus 3 ~V~g~V~~i~~~g--~~V~l~~~---i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~k 56 (73)
T cd05703 3 EVTGFVNNVSKEF--VWLTISPD---VKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAK 56 (73)
T ss_pred EEEEEEEEEeCCE--EEEEeCCC---cEEEEEHHHcCCccccccCHHHhCCCCCEEEEE
Confidence 4689999998777 89999654 5555542211 012345668999988765
No 282
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=20.71 E-value=4.8e+02 Score=21.38 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=37.6
Q ss_pred EEEEEeEeccCCeEEEEEEeCCe-eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 21 CGWVHRKRNHGGIIFIDLRDYTG-LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 21 ~GwV~~~R~~g~l~Fi~LrD~~g-~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
+=|.......|...=+.|.|..| .+|+.+.+.. ..++...|+.|.+..+++.-+.
T Consensus 8 r~W~~~~~~~~~~~~miL~De~G~~I~a~i~~~~--~~~f~~~L~eg~vy~is~f~v~ 63 (86)
T cd04480 8 RLWDVYNNASGESLEMVLVDEKGNRIHATIPKRL--AAKFRPLLKEGKWYTISNFEVA 63 (86)
T ss_pred EEEcCcCCCCCcEEEEEEEcCCCCEEEEEECHHH--HHhhhhhceeCCEEEEeeEEEE
Confidence 33443333356555567899888 8999998764 3445567999999999964443
No 283
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=20.65 E-value=7.9e+02 Score=26.35 Aligned_cols=90 Identities=17% Similarity=0.318 Sum_probs=59.8
Q ss_pred ecccccCCHHHHHHHHHH-cCCChhhhhhcHHHHHHHh-----hCCC--------CCccceeccHHHHHHHHcCCCCccc
Q psy3762 492 GGSIRIHDAEIQKKIFKV-LNIDNKIVKTQFGFLLNSL-----KYGA--------PPHGGIAFGLDRLITIMTGSKSIRD 557 (595)
Q Consensus 492 gGs~R~~d~~~~~~~~~~-~g~~~~~~~~~~~~yL~al-----~~G~--------PPh~G~glGlDRLvm~l~g~~~IRd 557 (595)
-|..+..+-+.+++.|+. .+++.+...+.+.|||++- +.|. ||.. =+|+.|++.-..+.+-+.+
T Consensus 160 PG~~~~~tl~~~~~~~~~y~~Id~~~L~~nL~yFL~~ViPVAEe~gVkmaiHPDDPP~p--i~GLpRIvst~ed~~~ll~ 237 (362)
T COG1312 160 PGWEEGYTLDQFRELLELYGGIDEEKLWENLAYFLKEVIPVAEEVGVKMAIHPDDPPWP--IFGLPRIVSTIEDYQRLLE 237 (362)
T ss_pred CCCcccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcchHHhcCceEEeCCCCCCcc--ccCcchhcCCHHHHHHHHH
Confidence 456667778888888885 5789998888999999864 4553 7777 6788888755444444433
Q ss_pred cccCCCCCCccccCCCCCCcCChhhhhh
Q psy3762 558 VIAFPKTQSAQCLLTNAPSIVDEKQLNE 585 (595)
Q Consensus 558 vi~FPr~~~~~~~~~~~p~~~~~~~l~~ 585 (595)
..-= -..|-.+-|+|=+.-++++|-+
T Consensus 238 ~vdS--p~NGiTlCtGS~G~~~dnDl~~ 263 (362)
T COG1312 238 MVDS--PYNGITLCTGSLGARADNDLPE 263 (362)
T ss_pred hccC--ccCCEEEeccccccCccccHHH
Confidence 3333 3445666666666655555543
Done!