Query psy3762
Match_columns 595
No_of_seqs 211 out of 1373
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 16:38:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ah6_A Aspartate--tRNA ligase, 100.0 1E-135 4E-140 1130.3 51.8 573 1-593 10-597 (617)
2 1c0a_A Aspartyl tRNA synthetas 100.0 1E-133 4E-138 1121.0 59.7 581 1-590 1-583 (585)
3 1l0w_A Aspartyl-tRNA synthetas 100.0 3E-133 1E-137 1113.9 57.3 569 1-591 2-578 (580)
4 3nem_A Aspartyl-tRNA synthetas 100.0 2.8E-95 1E-99 785.6 45.2 413 1-567 2-435 (438)
5 1e1o_A Lysyl-tRNA synthetase, 100.0 1.8E-95 6E-100 798.9 43.0 430 2-566 41-502 (504)
6 3a74_A Lysyl-tRNA synthetase; 100.0 4.1E-95 1.4E-99 794.8 42.0 430 2-566 33-492 (493)
7 4ex5_A Lysine--tRNA ligase; st 100.0 9.6E-94 3.3E-98 784.6 42.1 435 1-566 62-527 (529)
8 1eov_A ASPRS, aspartyl-tRNA sy 100.0 2.8E-92 9.6E-97 772.8 47.3 419 2-567 22-484 (487)
9 1wyd_A Hypothetical aspartyl-t 100.0 1.9E-92 6.4E-97 763.1 43.8 408 1-567 2-426 (429)
10 3i7f_A Aspartyl-tRNA synthetas 100.0 2.5E-91 8.7E-96 766.2 47.8 416 3-567 50-545 (548)
11 2xgt_A Asparaginyl-tRNA synthe 100.0 2.9E-92 1E-96 764.0 38.1 411 5-567 2-432 (435)
12 3bju_A Lysyl-tRNA synthetase; 100.0 2.9E-91 9.8E-96 769.1 43.1 434 2-567 33-508 (521)
13 1n9w_A Aspartyl-tRNA synthetas 100.0 1.2E-91 4.2E-96 755.2 39.4 397 3-567 2-419 (422)
14 3m4p_A Ehasnrs, asparaginyl-tR 100.0 1.4E-91 4.8E-96 760.3 38.8 412 3-567 19-453 (456)
15 1x54_A Asparaginyl-tRNA synthe 100.0 2.1E-91 7.1E-96 756.6 39.5 408 1-567 2-431 (434)
16 3a5y_A GENX, putative lysyl-tR 100.0 4.4E-70 1.5E-74 572.8 26.8 303 130-565 28-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 3.4E-62 1.2E-66 504.4 25.7 270 124-566 1-289 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 2.8E-24 9.5E-29 221.3 11.6 148 88-241 23-189 (290)
19 12as_A Asparagine synthetase; 99.8 1.5E-19 5.3E-24 182.1 21.3 272 138-560 4-315 (330)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.7 1E-17 3.5E-22 171.8 14.6 97 142-240 73-182 (288)
21 1b7y_A Phers, protein (phenyla 99.7 4.6E-17 1.6E-21 170.6 15.3 113 143-257 104-245 (350)
22 3pco_A Phenylalanyl-tRNA synth 99.6 1.1E-15 3.8E-20 158.4 6.8 112 143-257 110-235 (327)
23 2rhq_A Phenylalanyl-tRNA synth 99.6 9E-15 3.1E-19 150.5 12.7 113 143-257 56-184 (294)
24 3l4g_A Phenylalanyl-tRNA synth 99.4 1.4E-12 4.7E-17 141.9 14.1 111 143-253 228-395 (508)
25 3cmq_A Phenylalanyl-tRNA synth 99.1 1.6E-10 5.6E-15 123.8 11.4 95 143-239 51-164 (415)
26 1z7m_A ATP phosphoribosyltrans 99.0 1.7E-08 5.9E-13 105.9 19.0 104 138-242 35-152 (344)
27 2du3_A O-phosphoseryl-tRNA syn 98.7 1.5E-08 5.1E-13 110.8 9.3 47 208-254 206-255 (534)
28 2du7_A O-phosphoseryl-tRNA syn 98.7 3.4E-08 1.2E-12 107.9 11.7 64 191-254 197-267 (549)
29 2odr_B Phosphoseryl-tRNA synth 98.7 5.4E-08 1.8E-12 107.1 11.2 68 189-256 202-276 (648)
30 2odr_A Phosphoseryl-tRNA synth 98.7 5.7E-08 2E-12 107.0 11.2 68 189-256 202-276 (665)
31 2odr_D Phosphoseryl-tRNA synth 98.7 6.5E-08 2.2E-12 106.7 11.6 68 189-256 202-276 (685)
32 2odr_C Phosphoseryl-tRNA synth 98.6 7.3E-08 2.5E-12 106.5 10.6 67 190-256 203-276 (701)
33 3rac_A Histidine-tRNA ligase; 98.4 1.5E-06 5E-11 92.1 11.9 116 139-255 37-176 (373)
34 1wu7_A Histidyl-tRNA synthetas 98.4 1.5E-06 5.1E-11 93.9 11.7 104 138-242 19-134 (434)
35 3od1_A ATP phosphoribosyltrans 98.3 1.2E-06 4.1E-11 93.6 10.4 116 138-254 23-154 (400)
36 2dq3_A Seryl-tRNA synthetase; 98.3 9E-07 3.1E-11 95.3 8.8 119 137-256 170-306 (425)
37 3lc0_A Histidyl-tRNA synthetas 98.3 7.2E-07 2.5E-11 96.9 8.0 116 139-255 43-175 (456)
38 1evl_A Threonyl-tRNA synthetas 98.3 7E-07 2.4E-11 95.5 7.7 116 138-254 29-161 (401)
39 1qe0_A Histidyl-tRNA synthetas 98.3 5.4E-07 1.9E-11 96.8 6.2 117 138-254 15-152 (420)
40 2i4l_A Proline-tRNA ligase; al 98.3 9E-07 3.1E-11 96.3 7.7 117 135-252 63-197 (458)
41 1h4v_B Histidyl-tRNA synthetas 98.3 2.9E-06 1E-10 91.1 11.0 104 138-242 16-136 (421)
42 4e51_A Histidine--tRNA ligase; 98.3 1.7E-06 5.8E-11 94.4 9.1 118 138-255 45-182 (467)
43 1htt_A Histidyl-tRNA synthetas 98.2 2.8E-06 9.5E-11 91.3 9.9 104 138-242 17-136 (423)
44 4g84_A Histidine--tRNA ligase, 98.2 6.3E-06 2.2E-10 89.5 11.9 118 137-255 26-159 (464)
45 4g85_A Histidine-tRNA ligase, 98.2 5.2E-06 1.8E-10 91.7 11.3 119 136-255 78-212 (517)
46 3net_A Histidyl-tRNA synthetas 98.2 3E-06 1E-10 92.4 8.5 118 138-256 25-175 (465)
47 1hc7_A Prolyl-tRNA synthetase; 98.1 5.1E-06 1.8E-10 90.7 10.0 120 138-257 43-186 (477)
48 3uh0_A Threonyl-tRNA synthetas 98.1 8.2E-06 2.8E-10 88.7 10.2 120 137-257 62-202 (460)
49 2j3l_A Prolyl-tRNA synthetase; 98.1 9E-06 3.1E-10 90.9 10.3 115 137-252 45-177 (572)
50 2dq0_A Seryl-tRNA synthetase; 98.1 6E-06 2.1E-10 89.4 8.2 119 137-256 191-327 (455)
51 1nj8_A Proline-tRNA synthetase 98.1 1.3E-05 4.4E-10 87.2 10.8 116 138-253 37-175 (459)
52 1nyr_A Threonyl-tRNA synthetas 98.0 5.6E-06 1.9E-10 93.8 7.9 118 136-254 268-404 (645)
53 1ses_A Seryl-tRNA synthetase; 98.0 1.1E-05 3.8E-10 86.5 9.7 119 138-256 165-302 (421)
54 3a32_A Probable threonyl-tRNA 97.9 1.3E-05 4.4E-10 87.5 8.5 102 138-239 48-169 (471)
55 1nj1_A PROR, proline-tRNA synt 97.9 1E-05 3.5E-10 88.9 7.5 117 137-254 69-208 (501)
56 1qf6_A THRRS, threonyl-tRNA sy 97.9 9.8E-06 3.3E-10 91.7 6.7 117 136-255 268-403 (642)
57 4hvc_A Bifunctional glutamate/ 97.9 3.1E-05 1.1E-09 85.1 10.4 120 137-256 59-200 (519)
58 3ial_A Prolyl-tRNA synthetase; 97.8 2.7E-05 9.2E-10 85.5 7.5 120 137-256 53-194 (518)
59 1usy_A ATP phosphoribosyltrans 97.7 2.4E-05 8.4E-10 79.2 5.6 103 145-255 6-119 (275)
60 2rhq_B Phenylalanyl-tRNA synth 97.7 0.00027 9.1E-09 81.7 14.5 96 143-239 496-602 (795)
61 3err_A Fusion protein of micro 97.7 4.7E-05 1.6E-09 83.9 7.9 118 137-256 273-411 (536)
62 1wle_A Seryl-tRNA synthetase; 97.6 0.0001 3.5E-09 80.5 9.1 121 137-257 217-359 (501)
63 3lss_A Seryl-tRNA synthetase; 97.6 4.4E-05 1.5E-09 82.8 5.2 120 136-256 205-346 (484)
64 3vbb_A Seryl-tRNA synthetase, 97.6 5.5E-05 1.9E-09 82.6 5.9 119 137-256 199-348 (522)
65 1ati_A Glycyl-tRNA synthetase; 97.6 0.00011 3.9E-09 80.7 8.2 48 208-256 210-260 (505)
66 2cja_A Seryl-tRNA synthetase; 97.5 4.7E-05 1.6E-09 83.5 4.0 115 137-253 229-393 (522)
67 3qne_A Seryl-tRNA synthetase, 97.4 9.4E-05 3.2E-09 80.2 5.4 116 137-256 183-323 (485)
68 3kf6_A Protein STN1; OB fold, 97.0 0.0075 2.6E-07 55.7 12.2 79 16-104 48-128 (159)
69 2zt5_A Glycyl-tRNA synthetase; 97.0 0.0011 3.6E-08 75.5 7.7 32 137-168 99-131 (693)
70 3mf2_A BLL0957 protein; aminoa 97.0 0.00044 1.5E-08 71.5 4.1 118 138-257 63-218 (346)
71 3kdf_D Replication protein A 3 96.9 0.0069 2.4E-07 54.2 11.2 79 16-104 32-111 (132)
72 3dm3_A Replication factor A; p 96.7 0.016 5.6E-07 49.7 11.5 86 4-106 6-101 (105)
73 2k50_A Replication factor A re 96.6 0.011 3.6E-07 51.4 9.7 88 5-106 9-106 (115)
74 4gop_B Putative uncharacterize 96.5 0.017 5.9E-07 51.8 10.9 79 16-104 37-116 (136)
75 1nnx_A Protein YGIW; structura 96.5 0.011 3.7E-07 51.1 9.0 84 4-104 26-109 (109)
76 3e0e_A Replication protein A; 96.5 0.024 8.1E-07 47.9 10.9 84 4-105 3-96 (97)
77 3ikl_A DNA polymerase subunit 96.3 0.0035 1.2E-07 67.5 5.7 109 138-256 103-227 (459)
78 1ynx_A Replication factor-A pr 96.3 0.024 8.2E-07 49.3 10.0 98 2-106 3-110 (114)
79 3au7_A TIAS, putative uncharac 95.8 0.089 3E-06 55.4 13.5 81 11-105 280-362 (402)
80 1g5h_A Mitochondrial DNA polym 95.8 0.0047 1.6E-07 66.8 3.7 119 138-257 61-218 (454)
81 2pi2_A Replication protein A 3 95.5 0.072 2.5E-06 53.4 11.1 78 17-104 73-151 (270)
82 3l4g_B Phenylalanyl-tRNA synth 95.4 0.055 1.9E-06 60.4 10.7 111 143-256 394-522 (589)
83 3ig2_A Phenylalanyl-tRNA synth 94.9 0.067 2.3E-06 51.7 8.2 113 143-256 7-151 (213)
84 3ica_A Phenylalanyl-tRNA synth 94.6 0.091 3.1E-06 50.7 8.4 113 143-256 7-151 (213)
85 1o7i_A SSB, SSO2364, single st 93.8 0.46 1.6E-05 41.3 10.6 83 5-106 4-97 (119)
86 3kdf_A Replication protein A 1 93.6 0.46 1.6E-05 41.6 10.1 72 11-105 18-90 (121)
87 3kf8_A Protein STN1; OB fold; 93.3 0.39 1.3E-05 46.3 9.9 86 16-105 86-185 (220)
88 1jmc_A Protein (replication pr 93.3 0.24 8.1E-06 48.6 8.7 98 2-106 7-114 (246)
89 4gop_C Putative uncharacterize 92.3 0.25 8.4E-06 53.1 7.8 100 1-106 1-109 (444)
90 1b7y_B Phers, protein (phenyla 92.1 0.47 1.6E-05 54.6 10.2 107 142-256 491-620 (785)
91 2kbn_A Conserved protein; nucl 90.7 1.5 5.1E-05 37.5 9.6 85 5-106 7-95 (109)
92 2hpi_A DNA polymerase III alph 90.1 0.37 1.3E-05 57.7 6.9 88 4-105 1027-1124(1220)
93 2pi2_E Replication protein A 1 89.3 2.4 8.4E-05 38.0 10.1 72 10-104 38-110 (142)
94 2k75_A Uncharacterized protein 89.0 4.4 0.00015 34.3 11.2 82 4-106 4-94 (106)
95 4gop_A Putative uncharacterize 86.5 2 6.9E-05 37.1 7.6 59 6-77 10-69 (114)
96 3fhw_A Primosomal replication 86.0 2.3 7.8E-05 36.8 7.6 52 45-106 49-100 (115)
97 3net_A Histidyl-tRNA synthetas 82.5 0.24 8.1E-06 53.6 -0.3 47 480-552 310-361 (465)
98 3od1_A ATP phosphoribosyltrans 80.7 0.92 3.2E-05 47.9 3.6 47 480-552 282-330 (400)
99 3rac_A Histidine-tRNA ligase; 73.8 0.86 2.9E-05 47.7 0.8 45 480-550 318-364 (373)
100 3k8a_A Putative primosomal rep 73.7 7.8 0.00027 32.7 6.7 77 16-103 8-102 (103)
101 1txy_A Primosomal replication 70.5 11 0.00036 31.7 6.8 53 45-104 50-102 (104)
102 3lc0_A Histidyl-tRNA synthetas 69.8 1.2 4.2E-05 47.8 0.9 47 480-551 301-351 (456)
103 1z9f_A Single-strand binding p 67.6 33 0.0011 30.8 10.0 86 17-105 18-122 (153)
104 3mxn_B RECQ-mediated genome in 67.3 37 0.0013 30.4 9.7 72 16-104 59-130 (150)
105 3f2b_A DNA-directed DNA polyme 66.5 50 0.0017 39.0 13.5 90 5-104 9-103 (1041)
106 1wjj_A Hypothetical protein F2 66.3 64 0.0022 28.8 11.4 85 5-106 18-121 (145)
107 3pco_B Phenylalanyl-tRNA synth 62.8 7 0.00024 44.9 5.4 110 145-256 494-628 (795)
108 1se8_A Single-strand binding p 60.5 41 0.0014 33.8 10.1 84 17-104 131-233 (301)
109 4e51_A Histidine--tRNA ligase; 59.3 7.3 0.00025 41.8 4.6 32 521-552 315-346 (467)
110 1sr3_A APO-CCME; OB fold, beta 57.2 44 0.0015 29.5 8.4 73 12-106 25-102 (136)
111 3tqy_A Single-stranded DNA-bin 56.8 16 0.00056 33.1 5.8 86 17-105 10-115 (158)
112 3vdy_A SSB, single-stranded DN 55.2 17 0.00058 30.9 5.4 86 17-105 7-109 (116)
113 1h4v_B Histidyl-tRNA synthetas 54.8 8.6 0.0003 40.4 4.1 19 534-552 301-319 (421)
114 4gs3_A Single-stranded DNA-bin 53.6 1E+02 0.0035 26.0 9.8 84 15-103 11-106 (107)
115 1j6q_A Cytochrome C maturation 53.0 62 0.0021 28.6 8.7 73 12-106 29-107 (136)
116 3en2_A Probable primosomal rep 52.8 38 0.0013 28.3 7.0 47 45-101 50-96 (101)
117 2fxq_A Single-strand binding p 52.5 30 0.001 34.0 7.4 86 16-105 129-230 (264)
118 2vw9_A Single-stranded DNA bin 52.4 18 0.00061 31.8 5.2 59 44-105 50-108 (134)
119 1qe0_A Histidyl-tRNA synthetas 50.8 5.9 0.0002 41.6 2.1 18 533-550 301-318 (420)
120 3ull_A DNA binding protein; DN 48.7 49 0.0017 28.8 7.5 59 44-105 68-127 (132)
121 1htt_A Histidyl-tRNA synthetas 48.3 11 0.00038 39.6 3.7 18 534-551 300-317 (423)
122 3ulp_A Single-strand binding p 45.8 37 0.0013 29.2 6.1 86 17-105 8-120 (124)
123 4dka_C RNA-editing complex pro 44.8 1.2E+02 0.0042 25.3 8.6 66 15-80 3-78 (105)
124 2b29_A Replication protein A 7 42.0 1.3E+02 0.0044 25.9 9.0 62 35-105 46-108 (123)
125 1v1q_A Primosomal replication 41.4 60 0.0021 28.6 6.8 83 16-105 20-120 (134)
126 2fxq_A Single-strand binding p 40.9 53 0.0018 32.1 7.1 58 44-105 53-110 (264)
127 1j5w_A Glycyl-tRNA synthetase 40.6 14 0.00049 36.2 2.7 57 476-560 134-191 (298)
128 3rf1_A Glycyl-tRNA synthetase 39.5 16 0.00054 36.1 2.8 57 476-560 146-203 (311)
129 2i4l_A Proline-tRNA ligase; al 37.6 10 0.00035 40.5 1.3 20 532-551 329-349 (458)
130 4g84_A Histidine--tRNA ligase, 35.4 13 0.00045 39.4 1.8 19 532-550 334-352 (464)
131 1yfs_A Alanyl-tRNA synthetase; 34.6 72 0.0025 33.9 7.1 99 143-256 6-118 (465)
132 1qvc_A Single stranded DNA bin 33.6 45 0.0015 29.6 4.7 87 16-105 6-115 (145)
133 3koj_A Uncharacterized protein 33.6 1.2E+02 0.0042 25.4 7.2 81 17-100 13-107 (108)
134 1wu7_A Histidyl-tRNA synthetas 33.0 17 0.00058 38.3 2.1 20 533-552 305-324 (434)
135 4g85_A Histidine-tRNA ligase, 33.0 19 0.00065 39.0 2.6 30 521-550 374-405 (517)
136 2ztg_A Alanyl-tRNA synthetase; 32.5 9.8 0.00033 43.2 0.1 29 534-563 239-267 (739)
137 2vl6_A SSO MCM N-TER, minichro 32.1 70 0.0024 31.3 6.4 25 3-27 106-130 (268)
138 2j3l_A Prolyl-tRNA synthetase; 32.0 14 0.00048 40.5 1.3 19 533-551 435-454 (572)
139 1yfs_A Alanyl-tRNA synthetase; 31.7 19 0.00066 38.3 2.2 28 534-561 215-242 (465)
140 3lgj_A Single-stranded DNA-bin 31.5 1.2E+02 0.004 27.7 7.3 87 16-105 24-135 (169)
141 3hy0_A Alanyl-tRNA synthetase; 31.3 88 0.003 33.0 7.1 96 143-254 5-115 (441)
142 2kct_A Cytochrome C-type bioge 31.0 2.2E+02 0.0074 23.4 8.1 74 12-106 5-86 (94)
143 3eiv_A Single-stranded DNA-bin 30.9 1.2E+02 0.0042 28.4 7.5 83 16-101 5-108 (199)
144 3f1z_A Putative nucleic acid-b 30.4 89 0.0031 25.6 5.5 65 11-78 45-118 (133)
145 3kf6_B Protein TEN1; OB fold, 29.8 2.5E+02 0.0085 23.5 9.1 65 4-77 10-74 (105)
146 2d6f_C Glutamyl-tRNA(Gln) amid 29.3 1.6E+02 0.0054 32.6 9.0 102 293-411 276-384 (619)
147 1fr3_A MOP, molybdate/tungstat 28.6 1.7E+02 0.0058 21.2 7.2 50 19-72 8-57 (67)
148 3hy0_A Alanyl-tRNA synthetase; 26.8 22 0.00075 37.6 1.6 28 534-561 232-259 (441)
149 2zze_A Alanyl-tRNA synthetase; 26.2 18 0.00061 41.1 0.8 23 539-562 250-272 (752)
150 1gm5_A RECG; helicase, replica 26.0 31 0.0011 39.4 2.8 62 12-77 162-229 (780)
151 1se8_A Single-strand binding p 25.9 78 0.0027 31.7 5.5 86 17-105 7-112 (301)
152 1zq1_C Glutamyl-tRNA(Gln) amid 25.1 1.6E+02 0.0054 32.7 8.1 105 293-412 285-397 (633)
153 2k52_A Uncharacterized protein 25.1 1.5E+02 0.0052 22.9 6.1 52 13-72 4-55 (80)
154 3pgz_A Single-stranded DNA-bin 22.5 1.3E+02 0.0044 28.1 5.9 87 16-105 27-138 (193)
155 1eqq_A Single stranded DNA bin 20.5 35 0.0012 31.5 1.5 58 44-104 55-115 (178)
No 1
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-135 Score=1130.32 Aligned_cols=573 Identities=38% Similarity=0.685 Sum_probs=524.4
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--HHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
+|||+|++|+.+++|++|+|+|||+++|.+ +|++|||++|.+|||++++.. ++++.++.|+.||+|.|+|+|+.+
T Consensus 10 ~rt~~~~~l~~~~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~ 86 (617)
T 4ah6_A 10 VRTNTCGELRSSHLGQEVTLCGWIQYRRQN---TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISR 86 (617)
T ss_dssp SCSSCGGGCCGGGTTCEEEEEEEECCCCTT---TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEEC
T ss_pred cCceEHHHhHHHhCCCEEEEEEEeeeecCe---EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 589999999999999999999999999975 599999999999999987642 678889999999999999999999
Q ss_pred CCCCCCCCcCCccEEEEEeeEEEeecCCCCCCccccc-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhh-hC
Q psy3762 79 PNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEK-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLD-SK 156 (595)
Q Consensus 79 ~~~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~-~~ 156 (595)
|++..|+++++|++||+|++|+|||+|.++|+++++. ..++++|++|||||+|++.++++|++||.+++++|+||. ++
T Consensus 87 ~~~~~n~~~~tgeiEl~~~~i~vL~~a~~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f~~~~~ 166 (617)
T 4ah6_A 87 PAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLH 166 (617)
T ss_dssp STTCCCTTSTTTTEEEEEEEEEEEECBCCCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCcccccccccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9888888899999999999999999998888887653 457899999999999999999999999999999999996 79
Q ss_pred CCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccccccc
Q psy3762 157 KFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCE 236 (595)
Q Consensus 157 gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e 236 (595)
||+||+||+|++++|+||++|.++++ ..+.+|||+||||+|||+||++|++||||||||||+|+++++|+|||||||||
T Consensus 167 gF~EVeTPiL~~st~~GA~~F~v~~~-~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e 245 (617)
T 4ah6_A 167 GFVDIETPTLFKRTPGGAKEFLVPSR-EPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIE 245 (617)
T ss_dssp CCEECCCCSSBCCCCSSSCCCEEECS-STTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEE
T ss_pred CeEEEeCCeeccCCCCCCcCceeccc-cCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceee
Confidence 99999999999999999999988865 56789999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhcc
Q psy3762 237 TSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMK 316 (595)
Q Consensus 237 ~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (595)
|+|++++|+|+++|+|++++++.+.+ ++..||+||||.|||.+||+||||+|++++++|+++++++++|.+|+..++.+
T Consensus 246 ~af~d~~d~m~~~E~l~~~~~~~~~~-~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~ 324 (617)
T 4ah6_A 246 MSFVDQTGIQSLIEGLLQYSWPNDKD-PVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKP 324 (617)
T ss_dssp EESCCHHHHHHHHHHHHHHHSCSSSC-CCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTST
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHhcC-ccCCCceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcC
Confidence 99999999999999999999876543 56679999999999999999999999999999999999999999999888767
Q ss_pred CCeeEEEecCCCC-ccchhhhHHHHHHHHH-hCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeE
Q psy3762 317 NGRIIGLKIPGGF-SISRNEINYYTQFVKT-YGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDII 394 (595)
Q Consensus 317 ~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~ 394 (595)
+++|++|++|+++ .++|+.++.+.++++. +|..++.++...+ .++++++.+++++++.++|.+.+++++||++
T Consensus 325 ~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d-----~~~~~~I~Kflsee~~~~L~e~l~a~~GDlI 399 (617)
T 4ah6_A 325 HGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNAN-----RNWNSPVANFIMESQRLELIRLMETQEEDVV 399 (617)
T ss_dssp TEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTT-----TTSSCTTHHHHHHHHHHHHHHHHTCCSSEEE
T ss_pred CCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecC-----CccccchhhhcCHHHHHHHHHHhCCCCCCEE
Confidence 8999999999876 4799999999999999 7766655554433 3588999999999999999999999999999
Q ss_pred EecCCchhhHHHHHHHHHHHhcccCccccc-----ccc-cCCCccEEEEecCCCcc-ccccccccccccCCCCCCC-CCC
Q psy3762 395 FLGGDEKNIVNNFMSALRIKIGYSDFGKRN-----NIL-NNKWHPLWVINFPMFKY-DKINNNWIARHHPFTAPKD-GYE 466 (595)
Q Consensus 395 ~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~-----~l~-~~~~~p~~V~dfP~~~~-~~~~~~~~a~~~PF~~~~~-~~~ 466 (595)
||++++...++++||++|..+++ ++ +++ ++.++|+||+|||+|++ ++++++|.|+|||||||+. |.+
T Consensus 400 ff~Ag~~~~v~~~LG~LR~~l~~-----~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~ 474 (617)
T 4ah6_A 400 LLTAGEHNKACSLLGKLRLECAD-----LLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIH 474 (617)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHH-----HHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTST
T ss_pred EEecCChHHHHHHHHHHHHHHHH-----HhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHH
Confidence 99999988999999999999998 55 366 56789999999999955 4577999999999999998 888
Q ss_pred cccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHH-HcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHH
Q psy3762 467 DFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFK-VLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRL 545 (595)
Q Consensus 467 ~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~-~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRL 545 (595)
.|. +||.+.++.+||||+||+||+|||+|+||+++|+++|+ .+|++.+ .|+|||+||+||+|||||||+|||||
T Consensus 475 ~l~-~~p~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~----~~~~~l~a~~~G~pphgG~a~G~dRl 549 (617)
T 4ah6_A 475 LLY-TEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVK----MLSHLLQALDYGAPPHGGIALGLDRL 549 (617)
T ss_dssp HHH-HSTTSSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHH----HHHHHHHHHTBTCCCEEEEEEEHHHH
T ss_pred Hhh-cChhhhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchh----hHHHHHHHHHcCCCCCCceeecHHHH
Confidence 887 89999999999999999999999999999999999999 8888753 69999999999999999999999999
Q ss_pred HHHHcCCCCccccccCCCCCCccccCCCCCCcCChhhhhhcccccccc
Q psy3762 546 ITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKKT 593 (595)
Q Consensus 546 vm~l~g~~~IRdvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 593 (595)
||+++|.+||||||+|||+.+|+|||++||+.|+++||+||||+++.+
T Consensus 550 vml~~g~~~irdvi~fP~~~~~~d~~~~aP~~v~~~qL~el~i~~~~~ 597 (617)
T 4ah6_A 550 ICLVTGSPSIRDVIAFPKSFRGHDLMSNTPDSVPPEELKPYHIRVSKP 597 (617)
T ss_dssp HHHHHTCSSGGGSSSSCCCSSSCCSSSCCSBCCCGGGTTTTC------
T ss_pred HHHHcCCCchheEEecCCCCCccccccCCCCCCCHHHHHhcCeeeccc
Confidence 999999999999999999999999999999999999999999998753
No 2
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=1.1e-133 Score=1120.95 Aligned_cols=581 Identities=50% Similarity=0.931 Sum_probs=541.5
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPN 80 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 80 (595)
||||+|++|..+++|++|+|+|||+++|.+|+++|++|||++|.+|||++++..+.++.++.|+.||+|.|+|+|+.+|+
T Consensus 1 ~rt~~~~~l~~~~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~ 80 (585)
T 1c0a_A 1 MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDE 80 (585)
T ss_dssp CCSSCGGGCCGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCT
T ss_pred CceeEHHHHHHHhCCCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCc
Confidence 79999999999999999999999999999999999999999999999998765567888899999999999999999999
Q ss_pred CCCCCCcCCccEEEEEeeEEEeecCCCCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCee
Q psy3762 81 KTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIE 160 (595)
Q Consensus 81 ~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~E 160 (595)
+..|+++++|++||+|++++|||+|.++||++.+ .+++++|++|||||+|++.++++|++||.|++++|+||.++||+|
T Consensus 81 ~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gFlE 159 (585)
T 1c0a_A 81 KNINRDMATGEIEVLASSLTIINRADVLPLDSNH-VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLD 159 (585)
T ss_dssp TTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ccccccCCCccEEEEEeEEEEEeccCCCCCCccc-cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 8899999999999999999999999888999887 788999999999999999999999999999999999999999999
Q ss_pred ccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccccccccccC
Q psy3762 161 IETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240 (595)
Q Consensus 161 V~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~ 240 (595)
|+||+|++++++||++|.++++.+.+.+|||+||||||||+||++|++||||||||||||+++++||||||||||||+|+
T Consensus 160 VeTPiL~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~ 239 (585)
T 1c0a_A 160 IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFM 239 (585)
T ss_dssp CCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESC
T ss_pred EeCCEEecCCCCCCccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecCC
Confidence 99999999999999999998887888888999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCee
Q psy3762 241 NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRI 320 (595)
Q Consensus 241 ~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (595)
+++|+|+++|+|++++++.+.+.+++. |+||||.||+++||+|+||+|++++++++++.+.+.+|..|...++.+++.+
T Consensus 240 d~~dvm~~~E~li~~i~~~v~~~~~~~-f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~~ 318 (585)
T 1c0a_A 240 TAPQVREVMEALVRHLWLEVKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRV 318 (585)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCS-CCEEEHHHHHHHHSCSSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCccc-cceeeHHHHHHHhcCCCccccCCceeEEehhhhccCCcceehhhhhccCceE
Confidence 999999999999999999999887765 9999999999999999999999999999999999999999988887666789
Q ss_pred EEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCc
Q psy3762 321 IGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDE 400 (595)
Q Consensus 321 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~ 400 (595)
.++.+|.+..++|+.++++.++++..|.+++.|+.+.+.....+++++++++++++++...++++++++.||+++|.++.
T Consensus 319 ~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~~d~~~~~~~~ 398 (585)
T 1c0a_A 319 AALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADN 398 (585)
T ss_dssp EEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEE
T ss_pred EEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEecccccccccccchhhhhcCHHHHHHHHHHhCCCcCcEEEEecCc
Confidence 99999977678999999999999999999998887754100002477899999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHhcccCccccccccc-CCCccEEEEecCCCccccccccccccccCCCCCCC-CCCcccccCcccccc
Q psy3762 401 KNIVNNFMSALRIKIGYSDFGKRNNILN-NKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKD-GYEDFIITNPEKIFS 478 (595)
Q Consensus 401 ~~~~~~~lg~~r~~l~~~~~~~~~~l~~-~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~-~~~~l~~~dp~~~~~ 478 (595)
...++..||++|.++++ ++++++ ..++|+||+|||+++ ++++++|.|+|||||||.+ |.+.+. +||.+.++
T Consensus 399 ~~~~~~~lG~lr~~l~~-----~~~lve~~~~~p~fV~dfP~~~-~~~~~~~~a~~~PFt~~~~~dl~~l~-~dp~~~~a 471 (585)
T 1c0a_A 399 KKIVADAMGALRLKVGK-----DLGLTDESKWAPLWVIDFPMFE-DDGEGGLTAMHHPFTSPKDMTAAELK-AAPENAVA 471 (585)
T ss_dssp HHHHHHHHHHHHHHHHH-----HTTCSCSSCCCEEEEECCBSEE-ECSSSCEEESSCTTBCBSSCCHHHHH-HSCTTCBB
T ss_pred ccchhhhhHHHHHHHHH-----HhCcccccccccEEEEeCCccc-cccccccccccCCccCCCchhhhhhc-cCCcceee
Confidence 88899999999999998 778884 478999999999998 7777899999999999987 555554 57744449
Q ss_pred ceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCcccc
Q psy3762 479 KAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDV 558 (595)
Q Consensus 479 ~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdv 558 (595)
++||||+||+||+|||+|+|||++|+++|+.+|+++++++..|+|||+||+||+|||||||||||||+|+++|.+|||||
T Consensus 472 ~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDRLvmlltg~~sIRdV 551 (585)
T 1c0a_A 472 NAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDV 551 (585)
T ss_dssp SEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred eEEEEEECCEEEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHHHHHHHcCCCcHHhe
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccCCCCCCcCChhhhhhccccc
Q psy3762 559 IAFPKTQSAQCLLTNAPSIVDEKQLNELNILY 590 (595)
Q Consensus 559 i~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~ 590 (595)
|+|||+++|.|||++||+.|+++||+||||++
T Consensus 552 i~FPr~~~~~~~~~~ap~~v~~~ql~~~~~~~ 583 (585)
T 1c0a_A 552 IAFPKTTAAACLMTEAPSFANPTALAELSIQV 583 (585)
T ss_dssp SSSCCCTTSCBTTTTBSCCCCHHHHHHTTCCC
T ss_pred ecCCCCCCccccccCCCCcCCHHHHHHhCCcc
Confidence 99999999999999999999999999999987
No 3
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=3.2e-133 Score=1113.90 Aligned_cols=569 Identities=43% Similarity=0.793 Sum_probs=529.6
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPN 80 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 80 (595)
||||+|++|+.+++|++|+|+|||+++|.+|+++|++|||++|.+|||++++.. .++.++.|+.||+|.|+|+|+.++
T Consensus 2 ~rt~~~~~l~~~~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~-~~~~~~~l~~e~~V~V~G~v~~~~- 79 (580)
T 1l0w_A 2 RRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASP-AYATAERVRPEWVVRAKGLVRLRP- 79 (580)
T ss_dssp CCSSCGGGCCGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTST-THHHHTTCCTTCEEEEEEEEEECS-
T ss_pred CcEEEHHHhHHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCChh-HHHHHhcCCCCcEEEEEEEEEcCC-
Confidence 599999999999999999999999999999999999999999999999987653 677888999999999999999987
Q ss_pred CCCCCCcCCccEEEEEeeEEEeecCCCCCCcccc------c-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHh
Q psy3762 81 KTNNTNLISGNIEILCRELKILNSSITLPFQIDE------K-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFL 153 (595)
Q Consensus 81 ~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~------~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff 153 (595)
..|+++++|++||+|++++|||+|.++||++.+ + .+++++|++|||||+|++.++++|++||.|++++|+||
T Consensus 80 -~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~fl 158 (580)
T 1l0w_A 80 -EPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFL 158 (580)
T ss_dssp -SCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 557777899999999999999999888999865 3 67899999999999999999999999999999999999
Q ss_pred hhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCcccccc
Q psy3762 154 DSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQI 233 (595)
Q Consensus 154 ~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~l 233 (595)
.++||+||+||+|++++++||++|.++++.+.+++|+|+||||||||+||++|++||||||||||||+++++||||||||
T Consensus 159 ~~~gF~EVeTPiL~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~l 238 (580)
T 1l0w_A 159 DREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQL 238 (580)
T ss_dssp HHTTCEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEE
T ss_pred HhCCcEEEeCCEEecCCCCCCCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccce
Confidence 99999999999999999999999999887777888889999999999999999999999999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHh
Q psy3762 234 DCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIA 313 (595)
Q Consensus 234 E~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~ 313 (595)
||||+|++++|+|+++|+|++++++.+.+.+++.||+||||.||+++||+|+||+|+++++.++++++++++|..+..++
T Consensus 239 E~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~ 318 (580)
T 1l0w_A 239 DLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAE 318 (580)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSS
T ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhccccccccccc
Confidence 99999999999999999999999999999888889999999999999999999999999999999999998888876533
Q ss_pred hccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCe
Q psy3762 314 NMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDI 393 (595)
Q Consensus 314 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~ 393 (595)
.++++.+|. .++|+.++.+.++++..|.+|+.|+.+.+ +++++++++++++ +...++++++++.||+
T Consensus 319 -----~v~~i~~~~--~~~r~~~~~l~~~~~~~g~~~~~~~~~~~-----~~~~~~~~k~l~~-~~~~l~~~~~~~~gd~ 385 (580)
T 1l0w_A 319 -----SVKALALPK--ALSRKEVAELEEVAKRHKAQGLAWARVEE-----GGFSGGVAKFLEP-VREALLQATEARPGDT 385 (580)
T ss_dssp -----EEEEEEESS--CCCHHHHHHHHHHHHHTSCSCCEEEEEET-----TEEESTTHHHHGG-GHHHHHHHHCCCTTCE
T ss_pred -----eeEEEeccC--ccCHHHHHHHHHHHHHcCCCcceEEEecC-----ccccchhhhhhhH-HHHHHHHHhCCCcCce
Confidence 688999986 58999999999999999999999988765 1366778888877 6678999999999999
Q ss_pred EEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCCCCC-CCCcccccC
Q psy3762 394 IFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKD-GYEDFIITN 472 (595)
Q Consensus 394 ~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~-~~~~l~~~d 472 (595)
++|.++....+++.||++|.++++ ++++++..++|+||+|||++++++++++|.|+|||||||.+ |.+.+. +|
T Consensus 386 ~~~~~~~~~~~~~~Lg~lr~~l~~-----~~~lve~~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~-~d 459 (580)
T 1l0w_A 386 LLFVAGPRKVAATALGAVRLRAAD-----LLGLKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLE-KD 459 (580)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHH-----HTTCCCCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHH-HC
T ss_pred EEEecCccchhhhhHHHHHHHHHH-----HhcccccccCeEEEEcCCcccccccccccccccCCccCCCchhhhhhc-CC
Confidence 999999888899999999999998 77788557899999999999999899999999999999987 566665 67
Q ss_pred ccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCC
Q psy3762 473 PEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 473 p~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~ 552 (595)
|.+.++++||||+||+||+|||+|+|||++|+++|+.+|++++++++.|+|||+||+||+|||||||||||||+|+++|.
T Consensus 460 p~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~g~ 539 (580)
T 1l0w_A 460 PGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGS 539 (580)
T ss_dssp GGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTC
T ss_pred ccceeeeEEEEEeCCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHcCC
Confidence 75444999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CCccccccCCCCCCccccCCCCCCcCChhhhhhcccccc
Q psy3762 553 KSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYK 591 (595)
Q Consensus 553 ~~IRdvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 591 (595)
+||||||+|||+++|.|||++|||.|+++||+||||++.
T Consensus 540 ~sIRdVi~FP~~~~~~~~~~~aP~~v~~~ql~~~~~~~~ 578 (580)
T 1l0w_A 540 PSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVV 578 (580)
T ss_dssp SSGGGGSSSCCCTTSCBTTTTBSEECCHHHHHHHTEEEC
T ss_pred CcHHeEecCCCCCCccccccCCCCcCCHHHHHhhcceec
Confidence 999999999999999999999999999999999999873
No 4
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=2.8e-95 Score=785.59 Aligned_cols=413 Identities=31% Similarity=0.511 Sum_probs=351.5
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc--HHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND--IKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~--~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
+|||+|++|+.+++|++|+|+|||+++|.+|+++|++|||++|.+|||++++. .++++.+++|+.||+|.|+|+|+++
T Consensus 2 ~rt~~~~~l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~ 81 (438)
T 3nem_A 2 YRTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFT 81 (438)
T ss_dssp CCSCCGGGCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEEC
T ss_pred ceEEEHHHcchhcCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 48999999999999999999999999999999999999999999999998764 3678888999999999999999987
Q ss_pred CCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhC
Q psy3762 79 PNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSK 156 (595)
Q Consensus 79 ~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~ 156 (595)
+. ..|++||+|++++|||+|. ++|+++++. .+++++|+++||||+|++.++++|++||.|++++|+||.++
T Consensus 82 ~~-------~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~~~ 154 (438)
T 3nem_A 82 PK-------AKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHEN 154 (438)
T ss_dssp TT-------STTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC-------CCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 53 3489999999999999997 788887653 47899999999999999999999999999999999999999
Q ss_pred CCeeccCceeecCCCCCCcc-ccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccc
Q psy3762 157 KFIEIETPILSKSTPEGARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQID 234 (595)
Q Consensus 157 gF~EV~TPiL~~~~~~ga~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE 234 (595)
||+||+||+|++++++|+.+ |.+. +.+..+||+||||+|||++|++|++||||||||||||+++++||+ ||||||
T Consensus 155 gF~EVeTPiL~~~~~eg~~~~f~~~---~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le 231 (438)
T 3nem_A 155 GFIEIHTPKIIATATEGGTELFPMK---YFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSID 231 (438)
T ss_dssp TCEECCCCSEESSCSSCSSSCCEEE---ETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEE
T ss_pred CcEEEeCCEEecCCCCCCccceeEe---eCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeee
Confidence 99999999999999888765 3332 357779999999999999999999999999999999999998776 999999
Q ss_pred cccccCC-HHHHHHHHHHHHHHHHHHHcC----------CCC---CCCCccccHHHHHHHhCCCCCccccchhhcchhhh
Q psy3762 235 CETSFMN-EEEIRNLFEEMIRVIFYKTLN----------IKL---PNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300 (595)
Q Consensus 235 ~e~~~~~-~~dl~~~~E~ll~~l~~~~~~----------~~~---~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~ 300 (595)
||++|++ ++|+|+++|+|++++++.+.+ .++ ..||+||||.||++.+..
T Consensus 232 ~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~~~~~pf~rity~eai~~l~~----------------- 294 (438)
T 3nem_A 232 SEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGD----------------- 294 (438)
T ss_dssp EEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHH-----------------
T ss_pred eeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccccCCCCceEEEHHHHHHHHHH-----------------
Confidence 9999999 999999999999999988752 332 358999999999975310
Q ss_pred hhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHH
Q psy3762 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILE 380 (595)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 380 (595)
.|. +..||. ++++. .
T Consensus 295 ---------------------------------------------~g~---------~~~~~~-dl~~~--------~-- 309 (438)
T 3nem_A 295 ---------------------------------------------LGK---------EIPWGE-DIDTE--------G-- 309 (438)
T ss_dssp ---------------------------------------------TTC---------CCCTTS-CCCHH--------H--
T ss_pred ---------------------------------------------cCC---------CCCCCC-CCCcH--------H--
Confidence 000 000010 01111 1
Q ss_pred HHHHHhcCcCCCeEEecCCchhhHHHHHHH-HHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCC
Q psy3762 381 KIINKTEAQNGDIIFLGGDEKNIVNNFMSA-LRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFT 459 (595)
Q Consensus 381 ~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~-~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~ 459 (595)
++.|+. +++. ....|+||+|||.. .+|||
T Consensus 310 ------------------------e~~l~~~~~~~--------------~~~~p~fi~~yP~~------------~~pfy 339 (438)
T 3nem_A 310 ------------------------ERLLGKYMMEN--------------ENAPLYFLYQYPSE------------AKPFY 339 (438)
T ss_dssp ------------------------HHHHHHHHHHH--------------HCCSEEEEESCBGG------------GSCTT
T ss_pred ------------------------HHHHHHHhhhh--------------cCCCCEEEECCchh------------hCccc
Confidence 122222 1111 12579999999985 38998
Q ss_pred CCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCcccee
Q psy3762 460 APKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIA 539 (595)
Q Consensus 460 ~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~g 539 (595)
|+.+ . +|| .++++|||+++|.||+|||+|+|||++|+++|++.|++++ .++|||+|++||+|||||||
T Consensus 340 ~k~~-----~-~~p--~~~~rfdL~~~G~Ei~nG~~el~d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pP~~G~G 407 (438)
T 3nem_A 340 IMKY-----D-NKP--EICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPE----SFEFYLKAFRYGMPPHGGFG 407 (438)
T ss_dssp BCBC-----T-TST--TBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGG----GGHHHHHTTSSCCCCEEEEE
T ss_pred cccC-----C-CCC--CceEEEEEEECCEEEEeCeeecCCHHHHHHHHHHcCCChh----HHHHHHHHHHcCCCCceEEE
Confidence 7653 1 455 6899999999999999999999999999999999999876 47899999999999999999
Q ss_pred ccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 540 FGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 540 lGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
||||||+|+++|.+||||||+|||+++.
T Consensus 408 lGidRLvm~l~g~~~Irdvi~FPr~~~r 435 (438)
T 3nem_A 408 LGAERLIKQMLDLPNIREVILFPRDRRR 435 (438)
T ss_dssp EEHHHHHHHHTTCSCGGGGSSSCCCSSC
T ss_pred EhHHHHHHHHhCCCcHHHcccCCCCccC
Confidence 9999999999999999999999999853
No 5
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=1.8e-95 Score=798.88 Aligned_cols=430 Identities=24% Similarity=0.448 Sum_probs=350.6
Q ss_pred ccccccccccccC----------CCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc--HHHHH-HHhcCCCCcE
Q psy3762 2 RTHYCGNITEKLL----------DQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND--IKIYK-IAKIIRNEFC 68 (595)
Q Consensus 2 ~t~~~~~l~~~~~----------g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~--~~~~~-~~~~l~~es~ 68 (595)
|||+|+++..++. |++|+|+|||+++|.+||++|++|||++|.+|||++++. .+.++ .++.|+.||+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~ 120 (504)
T 1e1o_A 41 RDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDI 120 (504)
T ss_dssp CSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCE
T ss_pred CceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCE
Confidence 8999999998877 889999999999999999999999999999999998653 24566 6788999999
Q ss_pred EEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHHH
Q psy3762 69 LQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKVT 146 (595)
Q Consensus 69 V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i~ 146 (595)
|.|+|+|+++ ++|++||+|++++|||+|. ++|..... ..++++|+++|||||| ++.++++|++||.|+
T Consensus 121 V~V~G~v~~~---------~~ge~ei~~~~i~vl~~a~~plP~k~~~-~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~ 190 (504)
T 1e1o_A 121 IGARGTLFKT---------QTGELSIHCTELRLLTKALRPLPDKFHG-LQDQEVRYRQRYLDLIANDKSRQTFVVRSKIL 190 (504)
T ss_dssp EEEEEEEEEC---------TTCCEEEEEEEEEEEECCSSCCCC--------TTHHHHTHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEec---------CCceEEEEEEEEEEecccCCCCCccccC-CcChhhhhhccchhhhcCHHHHHHHHHHHHHH
Confidence 9999999986 3589999999999999996 56644332 4568999999999996 899999999999999
Q ss_pred HHHHHHhhhCCCeeccCceeecCCCCC--CccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCC
Q psy3762 147 MEVRKFLDSKKFIEIETPILSKSTPEG--ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRS 224 (595)
Q Consensus 147 ~~iR~ff~~~gF~EV~TPiL~~~~~~g--a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~ 224 (595)
+++|+||.++||+||+||+|+++ ++| |+.|.++.. +.+..+||+||||||+|+||++|++||||||||||||++++
T Consensus 191 ~~iR~f~~~~gFlEVeTPiL~~~-~~Ga~ar~F~t~~~-~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~ 268 (504)
T 1e1o_A 191 AAIRQFMVARGFMEVETPMMQVI-PGGASARPFITHHN-ALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV 268 (504)
T ss_dssp HHHHHHHHTTTCEECCCCSEESS-CCSSCCCCCEEEET-TTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC
T ss_pred HHHHHHHHHCCCEEEECCeEEec-CCCCcccceEeccC-CCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCc
Confidence 99999999999999999999965 555 356766532 45778999999999999999999999999999999999999
Q ss_pred CCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC----------CCCCCCccccHHHHHHHhCCCCCccccchhh
Q psy3762 225 DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI----------KLPNPFPVIEWSTAIKLYGSDKPDMCIKLIF 294 (595)
Q Consensus 225 ~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~----------~~~~~f~rity~ea~~~~~~d~p~lr~~~~~ 294 (595)
+|+|||||||||++|++++|+|+++|+|++++++.+.+. ++..||+||||.||+++|++| .|+
T Consensus 269 rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~~~~pf~rity~eAi~~~~~d-~d~------ 341 (504)
T 1e1o_A 269 RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE-TDM------ 341 (504)
T ss_dssp -CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETTSCCEEEEHHHHHHHHSTT-CCG------
T ss_pred cccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeeccCCCceEEeHHHHHHHHcCC-CCc------
Confidence 999999999999999999999999999999999998763 355799999999999999763 111
Q ss_pred cchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCccccccc
Q psy3762 295 TDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYF 374 (595)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 374 (595)
.+. ...+.+.++++..|.+ +.. +
T Consensus 342 ---~~~---------------------------------~~~~~~~~~~~~~g~~------~~~----------~----- 364 (504)
T 1e1o_A 342 ---ADL---------------------------------DNFDAAKALAESIGIT------VEK----------S----- 364 (504)
T ss_dssp ---GGG---------------------------------GSHHHHHHHHHHTTCC------CCT----------T-----
T ss_pred ---ccc---------------------------------CCHHHHHHHHHHcCCC------CCC----------C-----
Confidence 000 1123344445444321 000 0
Q ss_pred CHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccc
Q psy3762 375 NNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIA 453 (595)
Q Consensus 375 ~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a 453 (595)
..+|.+..++.. .++ +....|+||+|||+..
T Consensus 365 -------------------------------~~~g~l~~~~~~-------~~ve~~~~~p~fV~dyP~~~---------- 396 (504)
T 1e1o_A 365 -------------------------------WGLGRIVTEIFD-------EVAEAHLIQPTFITEYPAEV---------- 396 (504)
T ss_dssp -------------------------------CCHHHHHHHHHH-------HHTGGGCCSCEEEECCBGGG----------
T ss_pred -------------------------------cCHhHHHHHHHH-------HHhhccCCCeEEEECCCccc----------
Confidence 011222222221 022 3456799999999963
Q ss_pred cccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc----CCChhhhhhcHHHHHHHhh
Q psy3762 454 RHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL----NIDNKIVKTQFGFLLNSLK 529 (595)
Q Consensus 454 ~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~----g~~~~~~~~~~~~yL~al~ 529 (595)
+||+|+.+ +|| .++++|||++||+||+|||+|+|||++|+++|+.+ +...++....++|||+|++
T Consensus 397 --~pf~~~~~-------~dp--~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~ 465 (504)
T 1e1o_A 397 --SPLARRND-------VNP--EITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALE 465 (504)
T ss_dssp --CTTBCBCS-------SCT--TBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHH
T ss_pred --CcCcCCCC-------CCC--CceEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHh
Confidence 99999975 677 58999999999999999999999999999999864 2223333345699999999
Q ss_pred CCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 530 YGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 530 ~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
||+|||||||||||||+|++||.+||||||+|||++.
T Consensus 466 yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~ 502 (504)
T 1e1o_A 466 YGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 502 (504)
T ss_dssp HHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred cCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 9999999999999999999999999999999999984
No 6
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=4.1e-95 Score=794.82 Aligned_cols=430 Identities=23% Similarity=0.358 Sum_probs=351.4
Q ss_pred ccccccccccccC----------CCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--HHHHHHhcCCCCcEE
Q psy3762 2 RTHYCGNITEKLL----------DQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYKIAKIIRNEFCL 69 (595)
Q Consensus 2 ~t~~~~~l~~~~~----------g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~~~~~~~~l~~es~V 69 (595)
|||+|+++..++. |++|+|+|||+++|.+||++|++|||++|.+|||++++.. +.++.++.|+.||+|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v 112 (493)
T 3a74_A 33 RTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIV 112 (493)
T ss_dssp CSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEE
T ss_pred CceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCEE
Confidence 8999999998876 8899999999999999999999999999999999986532 467777889999999
Q ss_pred EEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHHHH
Q psy3762 70 QIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKVTM 147 (595)
Q Consensus 70 ~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i~~ 147 (595)
.|+|+|.++ ++|++||+|++++|||+|. ++|..... ..++++|+++|||||| ++.+++++++||.|++
T Consensus 113 ~V~G~v~~~---------~~ge~ei~~~~i~vl~~~~~plP~k~~~-~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~~ 182 (493)
T 3a74_A 113 GVRGTMFKT---------KVGELSIKVSSYEFLTKALRPLPEKYHG-LKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQ 182 (493)
T ss_dssp EEEEEEEEC---------TTCCEEEEEEEEEEEECCSSCCCCC------CHHHHHHTHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred EEEEEEEeC---------CCCcEEEEEEEEEEcccccCCCCccccC-CCCHhhhhhcchhhhhcCHHHHHHHHHHHHHHH
Confidence 999999986 3589999999999999995 56644332 4668999999999996 8999999999999999
Q ss_pred HHHHHhhhCCCeeccCceeecCCCCC-CccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCC
Q psy3762 148 EVRKFLDSKKFIEIETPILSKSTPEG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDR 226 (595)
Q Consensus 148 ~iR~ff~~~gF~EV~TPiL~~~~~~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r 226 (595)
++|+||.++||+||+||+|+++.+++ |+.|.++. .+.+..+||+||||+|+|++|++|++||||||||||||+++++|
T Consensus 183 ~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~-~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~rH 261 (493)
T 3a74_A 183 SMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHH-NALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRH 261 (493)
T ss_dssp HHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEE-TTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTB
T ss_pred HHHHHHHhCCeEEEECCeEEecCCCCcccceEecc-cCCCceeEEecCHHHHHHHHhhcccCceEEECccccCCCCCccc
Confidence 99999999999999999999664332 35576542 24577889999999999999999999999999999999999999
Q ss_pred CccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC----------CCCCCCccccHHHHHHHhCCCCCccccchhhcc
Q psy3762 227 QPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI----------KLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTD 296 (595)
Q Consensus 227 ~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~----------~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~ 296 (595)
+|||||||||++|++++|+|+++|+|++++++.+.+. ++..||+||||.||+++|++.+..
T Consensus 262 ~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~~pf~rity~eai~~~~~~d~~--------- 332 (493)
T 3a74_A 262 NPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFW--------- 332 (493)
T ss_dssp CSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEECCSSCEEEEHHHHHHHHTCCCTT---------
T ss_pred CCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeeccCCCcceeeHHHHHHHHhCCCCc---------
Confidence 9999999999999999999999999999999998763 355799999999999999753210
Q ss_pred hhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCH
Q psy3762 297 LTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNN 376 (595)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (595)
+....+.+.++++..|.+ +.+ .
T Consensus 333 -----------------------------------~~~~~~~~~~~~~~~g~~------~~~----------~------- 354 (493)
T 3a74_A 333 -----------------------------------RQMSDEEARELAKEHGVE------VAP----------H------- 354 (493)
T ss_dssp -----------------------------------SCCCHHHHHHHHHHTTCC------CCT----------T-------
T ss_pred -----------------------------------cccCHHHHHHHHHHcCCC------CCC----------C-------
Confidence 000123344445444321 000 0
Q ss_pred HHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccccc
Q psy3762 377 LILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIARH 455 (595)
Q Consensus 377 ~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~~ 455 (595)
..+|.+..++.. .++ +....|+||+|||+..
T Consensus 355 -----------------------------~~~g~l~~~~~~-------~~ve~~~~~p~fv~dyP~~~------------ 386 (493)
T 3a74_A 355 -----------------------------MTFGHIVNEFFE-------QKVEDKLIQPTFIYGHPVEI------------ 386 (493)
T ss_dssp -----------------------------CCHHHHHHHHHH-------HHTGGGCCSCEEEECCBGGG------------
T ss_pred -----------------------------cChhHHHHHHHH-------HHhhcccCCcEEEECCCccc------------
Confidence 001122112221 022 3456799999999963
Q ss_pred cCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc----CCChhhhhhcHHHHHHHhhCC
Q psy3762 456 HPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL----NIDNKIVKTQFGFLLNSLKYG 531 (595)
Q Consensus 456 ~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~----g~~~~~~~~~~~~yL~al~~G 531 (595)
+||||+.+ +|| .++++|||++||+||+|||+|+|||++|+++|+.+ +...++....++|||+|++||
T Consensus 387 ~pf~~~~~-------~dp--~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG 457 (493)
T 3a74_A 387 SPLAKKNP-------DDP--RFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYG 457 (493)
T ss_dssp CTTBCBCS-------SCT--TBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTC
T ss_pred CCccCcCC-------CCC--CeEEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCC
Confidence 99999975 677 58999999999999999999999999999999863 222233334569999999999
Q ss_pred CCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 532 APPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 532 ~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
+|||||||||||||+|++||.+||||||+|||++.
T Consensus 458 ~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 458 MPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp CCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred CCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999999999999999873
No 7
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=9.6e-94 Score=784.61 Aligned_cols=435 Identities=25% Similarity=0.441 Sum_probs=347.7
Q ss_pred CccccccccccccC----------CCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc--HHHHHHHhcCCCCcE
Q psy3762 1 MRTHYCGNITEKLL----------DQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND--IKIYKIAKIIRNEFC 68 (595)
Q Consensus 1 ~~t~~~~~l~~~~~----------g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~--~~~~~~~~~l~~es~ 68 (595)
.|||+|+++..++. |++|+|+|||+++|.+||++|++|||++|.||||++++. .+.++.+++|+.||+
T Consensus 62 ~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~ 141 (529)
T 4ex5_A 62 QPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDI 141 (529)
T ss_dssp CCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCE
T ss_pred cCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCE
Confidence 38999999998776 789999999999999999999999999999999998754 256788889999999
Q ss_pred EEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHHH
Q psy3762 69 LQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKVT 146 (595)
Q Consensus 69 V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i~ 146 (595)
|.|+|+|+++ ++|++||+|++|+|||+|. ++|+.... ..++++|+++|||||| ++.++++|++||.|+
T Consensus 142 V~V~G~v~~t---------~~gelel~~~~i~vLs~a~~plP~k~~~-l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~ 211 (529)
T 4ex5_A 142 VAARGVLFRT---------NKGELSVKCTQLRLLAKALRPLPDKFHG-LADQETRYRQRYVDLIVTPETRTTFRARTKAI 211 (529)
T ss_dssp EEEEEEEEEC---------TTSCEEEEEEEEEEEECCSSCCCC-------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEc---------CCCcEEEEEEEEEEEecCCCCCCccccC-CcChhhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 9999999986 4689999999999999997 67776655 5678999999999997 899999999999999
Q ss_pred HHHHHHhhhCCCeeccCceeecCCCCCC--ccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCC
Q psy3762 147 MEVRKFLDSKKFIEIETPILSKSTPEGA--RDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRS 224 (595)
Q Consensus 147 ~~iR~ff~~~gF~EV~TPiL~~~~~~ga--~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~ 224 (595)
++||+||.++||+||+||+|+++ ++|| ++|.+. ..+.+..+||+||||||||+||++|++||||||||||||++++
T Consensus 212 ~~iR~ff~~~gFlEVeTPiL~~~-~gGA~a~pF~t~-~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~ 289 (529)
T 4ex5_A 212 ASIRKFMGDADFMEVETPMLHPI-PGGAAAKPFVTH-HNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSP 289 (529)
T ss_dssp HHHHHHHHHTTCEECCCCSEESS-CCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBT
T ss_pred HHHHHHHHHCCCEEEeCCeeecc-CCCCcccccccc-cccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCC
Confidence 99999999999999999999965 5555 456432 2345667899999999999999999999999999999999999
Q ss_pred CCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcC----------CCCCCCCccccHHHHHHHhCCC-CCccccchh
Q psy3762 225 DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLN----------IKLPNPFPVIEWSTAIKLYGSD-KPDMCIKLI 293 (595)
Q Consensus 225 ~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~----------~~~~~~f~rity~ea~~~~~~d-~p~lr~~~~ 293 (595)
+|+|||||||||++|+|++|+|+++|+||+++++.+.+ .++..||+||||.||+++|++. .+.
T Consensus 290 rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~id~~~pf~Rity~eAi~~~~~~~~~~------ 363 (529)
T 4ex5_A 290 RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYTDG------ 363 (529)
T ss_dssp TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEETTSCCEEEEHHHHHHHHCTTSCHH------
T ss_pred CcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCceecCceeeccCCCceEEEHHHHHHHHhCCCChh------
Confidence 88999999999999999999999999999999999986 3456799999999999999762 110
Q ss_pred hcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccc
Q psy3762 294 FTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKY 373 (595)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 373 (595)
+ + ...+.+.++++..|.+- ..+.
T Consensus 364 -----~-~--------------------------------~~~~~l~~~~~~~g~~~----------------~~~~--- 386 (529)
T 4ex5_A 364 -----Q-L--------------------------------SDDAFLRSELKRLGVDV----------------TQPA--- 386 (529)
T ss_dssp -----H-H--------------------------------TCHHHHHHHHHHTTCCT----------------TSGG---
T ss_pred -----h-c--------------------------------CCHHHHHHHHHHcCCCC----------------CCcc---
Confidence 0 0 01123333444333210 0000
Q ss_pred cCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccc
Q psy3762 374 FNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIA 453 (595)
Q Consensus 374 ~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a 453 (595)
+.. . ....++.++-..+.+ +....|+||+|||..
T Consensus 387 ~~~---------------------~----~~g~l~~e~~~~~vE----------~~l~~P~FI~dyP~~----------- 420 (529)
T 4ex5_A 387 FLN---------------------A----GIGALQLALFEETAE----------AQLWEPTFIIDYPIE----------- 420 (529)
T ss_dssp GTT---------------------C----CHHHHHHHHHHHHTG----------GGCCSCEEEEEEEGG-----------
T ss_pred cCC---------------------C----CHHHHHHHHHHHHhc----------cccCCCEEEECCchh-----------
Confidence 000 0 000111111011111 234679999999985
Q ss_pred cccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc----CCChhhhhhcHHHHHHHhh
Q psy3762 454 RHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL----NIDNKIVKTQFGFLLNSLK 529 (595)
Q Consensus 454 ~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~----g~~~~~~~~~~~~yL~al~ 529 (595)
.+|||++.+ +|| .++++|||+++|.||+|||+|+|||++|+++|+.. +..+++....++|||+|++
T Consensus 421 -~splak~~~-------~~p--~~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~ale 490 (529)
T 4ex5_A 421 -VSPLARESD-------TVA--GITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALE 490 (529)
T ss_dssp -GCTTBCBCS-------SST--TEEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHH
T ss_pred -hCCCcccCC-------CCC--CceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHH
Confidence 399998764 666 68999999999999999999999999999999753 2222222223489999999
Q ss_pred CCCCCccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 530 YGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 530 ~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
||+|||||||||||||+|++||.+||||||+||+...
T Consensus 491 yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 491 YGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLRR 527 (529)
T ss_dssp TCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCCC
T ss_pred cCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccCC
Confidence 9999999999999999999999999999999999873
No 8
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=2.8e-92 Score=772.84 Aligned_cols=419 Identities=27% Similarity=0.398 Sum_probs=348.3
Q ss_pred ccccccccccc-cCCCEEEEEEEEEeEeccCCe-EEEEEEeCCeeEEEEECCC-----cHHHHHHHhcCCCCcEEEEEeE
Q psy3762 2 RTHYCGNITEK-LLDQVISLCGWVHRKRNHGGI-IFIDLRDYTGLVQIVFDPN-----DIKIYKIAKIIRNEFCLQIIGK 74 (595)
Q Consensus 2 ~t~~~~~l~~~-~~g~~V~i~GwV~~~R~~g~l-~Fi~LrD~~g~lQvv~~~~-----~~~~~~~~~~l~~es~V~V~G~ 74 (595)
++++|++|..+ ++|++|+|+|||+++|.+|++ +|++|||++|.+|||++++ ..+++++++.|+.||+|.|+|+
T Consensus 22 ~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~ 101 (487)
T 1eov_A 22 KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGI 101 (487)
T ss_dssp CCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEE
T ss_pred ceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEE
Confidence 46789999887 899999999999999999997 9999999999999999754 2367788899999999999999
Q ss_pred EEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc-------------CcchhhhccccchhhccHhhHHHHH
Q psy3762 75 VCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK-------------NILEVTNLKYRVLYLRYKHMQKNLR 140 (595)
Q Consensus 75 v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~-------------~~~~~~r~~~r~l~lr~~~~~~~l~ 140 (595)
|++++.+ +++.++|++||+|++++|||+|. ++|+++++. .+++++|+++||||+|++.++++++
T Consensus 102 v~~~~~~--~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~ 179 (487)
T 1eov_A 102 VKKVDEP--IKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFR 179 (487)
T ss_dssp EEECSSC--CTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred EEeCCCC--CcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCHHHHHHHH
Confidence 9998765 44456799999999999999997 688876432 2678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCeeccCceeecCCCC-CCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceec
Q psy3762 141 LRYKVTMEVRKFLDSKKFIEIETPILSKSTPE-GARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRD 219 (595)
Q Consensus 141 ~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~-ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~ 219 (595)
+|+.|++++|+||.++||+||+||+|++++++ ||+.|.++ +.|..+||+||||+|+|++|++|++||||||||||+
T Consensus 180 ~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~---~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~ 256 (487)
T 1eov_A 180 IQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVT---YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 256 (487)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEE---ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceec---cCCccEEcccChHHHHHHHHhcCCCceEEEeccEec
Confidence 99999999999999999999999999998665 46667765 367789999999999999999999999999999999
Q ss_pred CCCCCCCCc-cccccccccccC-CHHHHHHHHHHHHHHHHHHHcCCC-----------------CCC--CCccccHHHHH
Q psy3762 220 EDLRSDRQP-EFTQIDCETSFM-NEEEIRNLFEEMIRVIFYKTLNIK-----------------LPN--PFPVIEWSTAI 278 (595)
Q Consensus 220 E~~~~~r~~-EFt~lE~e~~~~-~~~dl~~~~E~ll~~l~~~~~~~~-----------------~~~--~f~rity~ea~ 278 (595)
|+++++||+ ||||||||++|. +++|+|+++|+|++++++.+.+.+ ... ||++++|.||+
T Consensus 257 E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~ 336 (487)
T 1eov_A 257 ENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGI 336 (487)
T ss_dssp CCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHH
T ss_pred CCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCcceecccCCCeeEEEHHHHH
Confidence 999998887 999999999997 589999999999999998774311 001 44455555544
Q ss_pred HHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEec
Q psy3762 279 KLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHK 358 (595)
Q Consensus 279 ~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (595)
+.
T Consensus 337 ~~------------------------------------------------------------------------------ 338 (487)
T 1eov_A 337 EM------------------------------------------------------------------------------ 338 (487)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 31
Q ss_pred cccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEe
Q psy3762 359 ISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVIN 438 (595)
Q Consensus 359 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~d 438 (595)
+++.+.+.++. .+.....++.||+++.... ...|+||+|
T Consensus 339 ------------------------l~~~g~~~~~~----~d~~~~~e~~l~~~~~~~~-------------~~~~~~v~d 377 (487)
T 1eov_A 339 ------------------------LRAAGKEIGDF----EDLSTENEKFLGKLVRDKY-------------DTDFYILDK 377 (487)
T ss_dssp ------------------------HHHTTCCCCTT----CCCCHHHHHHHHHHHHHHS-------------CCSEEEEEC
T ss_pred ------------------------HHHhCCCCCcc----cchhhHHHHHHHHHHHHHh-------------CCCCEEEEC
Confidence 11111111111 0111223456666543221 235899999
Q ss_pred cCCCccccccccccccccCCC-CCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhh
Q psy3762 439 FPMFKYDKINNNWIARHHPFT-APKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIV 517 (595)
Q Consensus 439 fP~~~~~~~~~~~~a~~~PF~-~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~ 517 (595)
||+. ++||| |+++ +|| .++++|||++||+||+|||+|+|||++|+++|+..|++++..
T Consensus 378 yP~~------------~~pfy~~~~~-------~dp--~~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~ 436 (487)
T 1eov_A 378 FPLE------------IRPFYTMPDP-------ANP--KYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDP 436 (487)
T ss_dssp CBGG------------GSCTTBCBCS-------SCT--TBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTST
T ss_pred Cccc------------cChhhcCcCC-------CCC--CeEEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhh
Confidence 9984 69995 6764 666 579999999999999999999999999999999999988632
Q ss_pred hhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 518 KTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 518 ~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
.++|||+|++||+|||||||||||||+|+++|.+||||||+|||+++.
T Consensus 437 --~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~~r 484 (487)
T 1eov_A 437 --GLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKR 484 (487)
T ss_dssp --TTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBTTB
T ss_pred --hHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHheeecCCCCCC
Confidence 478999999999999999999999999999999999999999999953
No 9
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-92 Score=763.11 Aligned_cols=408 Identities=29% Similarity=0.493 Sum_probs=347.9
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPN 80 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 80 (595)
||||+|++|..+++|++|+|+|||+++|.+|+++|++|||++|.+|||++++. +.++.++.|+.||+|.|+|+|++++.
T Consensus 2 ~~~~~~~~l~~~~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~-~~~~~~~~l~~~~~v~v~G~v~~~~~ 80 (429)
T 1wyd_A 2 YRSHFIADVTPEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNS-SAFGISQELTQESVIQVRGIVKADKR 80 (429)
T ss_dssp CCSSCTTTCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECTTS-TTHHHHTTCCTTCEEEEEEEEEECSS
T ss_pred ceEEEHHHhhHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh-HHHHHHHhCCCCCEEEEEEEEEecCC
Confidence 58999999998899999999999999999999999999999999999998754 46777889999999999999999864
Q ss_pred CCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCC
Q psy3762 81 KTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKF 158 (595)
Q Consensus 81 ~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF 158 (595)
.+|++||+|++++|||+|. ++|+++.+. .+++++|+++||||+|++.+++++++|+.|++++|+||.++||
T Consensus 81 -------~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~gF 153 (429)
T 1wyd_A 81 -------APRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGF 153 (429)
T ss_dssp -------SGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -------CCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3579999999999999994 677766542 3789999999999999999999999999999999999999999
Q ss_pred eeccCceeecCCCCCCcc-ccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccc
Q psy3762 159 IEIETPILSKSTPEGARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCE 236 (595)
Q Consensus 159 ~EV~TPiL~~~~~~ga~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e 236 (595)
+||+||+|++++++|+++ |.+. +.+..+||+||||+|+|+ |++|++||||||||||+|+++++||+ ||||+|||
T Consensus 154 ~eV~TP~l~~~~~e~~~~~f~~~---~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e 229 (429)
T 1wyd_A 154 IEIFTPKIIASATEGGAQLFPVI---YFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVE 229 (429)
T ss_dssp EECCCCSEESSCSSTTCCCCEEE---ETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEE
T ss_pred EEEECCEEEeeCCCCCceeEEEe---cCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccccccceeeEeeee
Confidence 999999999999998876 5543 457789999999999999 78899999999999999999997776 99999999
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHcC----------CCCC---CCCccccHHHHHHHhCCCCCccccchhhcchhhhhhc
Q psy3762 237 TSFMNEEEIRNLFEEMIRVIFYKTLN----------IKLP---NPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKD 303 (595)
Q Consensus 237 ~~~~~~~dl~~~~E~ll~~l~~~~~~----------~~~~---~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~ 303 (595)
++|.+++|+|+++|++++++++.+.+ ..+. .||+||||.||++.|...
T Consensus 230 ~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~l~~pf~rity~eA~~~~~~~------------------- 290 (429)
T 1wyd_A 230 MAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSK------------------- 290 (429)
T ss_dssp EETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHS-------------------
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccccccCCCCccEEEHHHHHHHHHhc-------------------
Confidence 99999999999999999999988753 2233 689999999999876210
Q ss_pred cchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHH
Q psy3762 304 SDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKII 383 (595)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 383 (595)
++. + .||. +++ .+.
T Consensus 291 -g~~-----------------~----------------------------------~~~~-~l~--------~~~----- 304 (429)
T 1wyd_A 291 -GYN-----------------I----------------------------------KFGD-DIG--------TPE----- 304 (429)
T ss_dssp -SCC-----------------C----------------------------------CTTS-CCC--------HHH-----
T ss_pred -CCC-----------------c----------------------------------ccCc-ccC--------cHH-----
Confidence 000 0 0010 011 110
Q ss_pred HHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCCCCC
Q psy3762 384 NKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKD 463 (595)
Q Consensus 384 ~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~ 463 (595)
++.|++. + ..+|+||+|||.. +||||++.+
T Consensus 305 ---------------------e~~l~~~---~--------------~~~p~fv~d~P~~------------~~pfy~~~~ 334 (429)
T 1wyd_A 305 ---------------------LRILNEE---L--------------KEDLYFIVDWPSD------------ARPFYTKSK 334 (429)
T ss_dssp ---------------------HHHHHHH---H--------------CCSEEEEECCBGG------------GSCTTBCBC
T ss_pred ---------------------HHHHHHH---h--------------ccCCEEEecCChh------------hChhhCCcC
Confidence 1122210 1 1269999999985 599977542
Q ss_pred CCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHH
Q psy3762 464 GYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLD 543 (595)
Q Consensus 464 ~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlD 543 (595)
. +|| .++++|||++||+||+|||+|+|||++|+++|+.+|++++ .|+|||+|++||+|||||||||+|
T Consensus 335 -----~-~~p--~~~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~----~~~~yl~al~yG~PP~~G~glGiD 402 (429)
T 1wyd_A 335 -----S-ENP--ELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPE----SFEFFLKWFDYGMPPHAGFGMGLA 402 (429)
T ss_dssp -----C-C-C--CBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGG----GGHHHHGGGGSCCCCEEEEEEEHH
T ss_pred -----C-CCC--CeEEEEEEEECCEEEEeCeeeeCCHHHHHHHHHHcCCChH----HHHHHHHHHhcCCCCceEEEEcHH
Confidence 1 555 5899999999999999999999999999999999999876 489999999999999999999999
Q ss_pred HHHHHHcCCCCccccccCCCCCCc
Q psy3762 544 RLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 544 RLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
||+|+++|.+||||||+|||+++.
T Consensus 403 RLvmll~g~~~Irdvi~FP~~~~~ 426 (429)
T 1wyd_A 403 RLMVMLTGIQSVKEIVPFPRDKKR 426 (429)
T ss_dssp HHHHHHHCCCCGGGTSSSCCBTTB
T ss_pred HHHHHHcCCCcHHhEEecCCCCCC
Confidence 999999999999999999999953
No 10
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=2.5e-91 Score=766.23 Aligned_cols=416 Identities=25% Similarity=0.392 Sum_probs=335.0
Q ss_pred cccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCC---cHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 3 THYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPN---DIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 3 t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~---~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
.++|++|+.+++|++|+|+|||+++|.+|+++|++|||++|++|||++.+ ..++++++++|+.||+|.|+|+|++++
T Consensus 50 ~~~i~~l~~~~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 129 (548)
T 3i7f_A 50 YTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVE 129 (548)
T ss_dssp BCCGGGCSGGGTTCEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECS
T ss_pred eEEhhhcchhcCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCC
Confidence 47899999999999999999999999999999999999999999999863 236788899999999999999999987
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecCC-CCCCccccc-------------------------------------------
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEK------------------------------------------- 115 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~------------------------------------------- 115 (595)
.+.. ++++|++||+|++|+|||+|. ++|+++++.
T Consensus 130 ~~~~--~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 207 (548)
T 3i7f_A 130 KPIE--KATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYA 207 (548)
T ss_dssp SCCT--TSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC--------------------------
T ss_pred cccc--cCCCCcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 6432 346799999999999999995 789886431
Q ss_pred -------------CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCC-CCccccccc
Q psy3762 116 -------------NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPE-GARDYLVPS 181 (595)
Q Consensus 116 -------------~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~-ga~~f~~~~ 181 (595)
.+++++|++|||||||++.++++|++||.+++++|+||.++||+||+||+|++++++ ||+.|.+++
T Consensus 208 ~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~~ 287 (548)
T 3i7f_A 208 KLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKY 287 (548)
T ss_dssp -----CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------
T ss_pred ccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEec
Confidence 246899999999999999999999999999999999999999999999999999988 466787654
Q ss_pred cCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccccccC-CHHHHHHHHHHHHHHHHHH
Q psy3762 182 RINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFM-NEEEIRNLFEEMIRVIFYK 259 (595)
Q Consensus 182 ~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~-~~~dl~~~~E~ll~~l~~~ 259 (595)
.+..+||+||||||||++|++|++||||||||||||+++++||+ |||||||||+|. +++|+|+++|+|++++++.
T Consensus 288 ---~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~ 364 (548)
T 3i7f_A 288 ---FDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDE 364 (548)
T ss_dssp -------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHH
T ss_pred ---CCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 45567999999999999999999999999999999999988776 999999999998 6999999999999999987
Q ss_pred HcCC---------------CCC-CCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEE
Q psy3762 260 TLNI---------------KLP-NPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGL 323 (595)
Q Consensus 260 ~~~~---------------~~~-~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (595)
+.+. .+. .||+||||.||++.+.
T Consensus 365 ~~~~~~~el~~~~~~~~~~~~~~~pf~rit~~eai~~l~----------------------------------------- 403 (548)
T 3i7f_A 365 IPKRFPDELKVIRKQYPFEDLIYRPFLRLTYKEAIEMLR----------------------------------------- 403 (548)
T ss_dssp HHHHCHHHHHHHHHHSCCCCCCCCSCEEEEHHHHHHHHH-----------------------------------------
T ss_pred HHHhhhHHHHHhhhcCCccccccCCcceeEHHHHHHHHH-----------------------------------------
Confidence 7421 111 5788899988887531
Q ss_pred ecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhh
Q psy3762 324 KIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNI 403 (595)
Q Consensus 324 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~ 403 (595)
..|.+ + .++. +++ . .
T Consensus 404 ---------------------~~g~~------~---~~~~-dl~--------~--------------------------~ 418 (548)
T 3i7f_A 404 ---------------------ASGET------I---GDYD-DFT--------T--------------------------P 418 (548)
T ss_dssp ---------------------HTTCC------C---CTTC-CCC--------H--------------------------H
T ss_pred ---------------------HcCCC------C---CCcc-ccc--------h--------------------------H
Confidence 00000 0 0000 011 1 1
Q ss_pred HHHHHHHH-HHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCccccccceee
Q psy3762 404 VNNFMSAL-RIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYD 482 (595)
Q Consensus 404 ~~~~lg~~-r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fD 482 (595)
.++.||++ ++.++ ..++||+|||.. .+||||..+ . +|| .++++||
T Consensus 419 ~e~~l~~~i~~~~~--------------~~~~~i~~yP~~------------~~pfYak~~-----~-~dp--~~~~rFD 464 (548)
T 3i7f_A 419 QEVKLGELIKAKYN--------------TDFYILDKFPAA------------IRPFYTMPD-----I-DDP--NYSNSYD 464 (548)
T ss_dssp HHHHHHHHHHHHHC--------------CSEEEEECCBGG------------GSCTTBCBC-----S-SCT--TBBSEEE
T ss_pred HHHHHHHHHHHHcC--------------CCeEEEecCccc------------cCchhhccC-----C-CCC--CeEEEEE
Confidence 12334442 22222 235677899985 389987542 1 565 6899999
Q ss_pred EEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCC
Q psy3762 483 LIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562 (595)
Q Consensus 483 l~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FP 562 (595)
|+++|.||+|||+|+|||++|+++|+..|++++ .++|||+|++||+|||||||||||||+|+++|.+||||||+||
T Consensus 465 L~i~G~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~----~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FP 540 (548)
T 3i7f_A 465 VFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPA----TLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFP 540 (548)
T ss_dssp EEETTEEEEEEEEECCCHHHHHHHHHHTTCCGG----GGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSC
T ss_pred EEECCEEEeeCeeecCCHHHHHHHHHHcCCChH----HHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCC
Confidence 999999999999999999999999999999886 4899999999999999999999999999999999999999999
Q ss_pred CCCCc
Q psy3762 563 KTQSA 567 (595)
Q Consensus 563 r~~~~ 567 (595)
|+++.
T Consensus 541 R~p~r 545 (548)
T 3i7f_A 541 RDPIR 545 (548)
T ss_dssp CBTTB
T ss_pred CCCCC
Confidence 99964
No 11
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=2.9e-92 Score=764.05 Aligned_cols=411 Identities=25% Similarity=0.402 Sum_probs=333.2
Q ss_pred cccccccccCCCEEEEEEEEEeEeccC-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTN 83 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~~g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~ 83 (595)
.|+++. +++|++|+|+|||+++|.+| +++|++|||++|.+|||++++..+.++.. +|+.||+|.|+|+|++++.+
T Consensus 2 ~i~~~~-~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~-~l~~~~~v~v~G~v~~~~~~-- 77 (435)
T 2xgt_A 2 KIRDLV-KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDAL-TVNTECTVEIYGAIKEVPEG-- 77 (435)
T ss_dssp CGGGGG-GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGGSSHHHH-HCCTTCEEEEEEEEEECC----
T ss_pred chhhhh-hcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcchhHHHHh-cCCCCCEEEEEEEEEecCCC--
Confidence 477884 68899999999999999996 79999999999999999975433334433 69999999999999998753
Q ss_pred CCCcCCccEEEEEeeEEEeecCCC-CCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeecc
Q psy3762 84 NTNLISGNIEILCRELKILNSSIT-LPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIE 162 (595)
Q Consensus 84 ~~~~~~g~iEl~v~~i~vls~~~~-lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~ 162 (595)
++++|++||+|++++|||++.+ .++++.++.+++++|+++||||+|++.++++|++||.|++++|+||.++||+||+
T Consensus 78 --~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVe 155 (435)
T 2xgt_A 78 --KEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVA 155 (435)
T ss_dssp ------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred --cCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 2467999999999999998632 2344444467899999999999999999999999999999999999999999999
Q ss_pred CceeecCCCCCC-ccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccccccC
Q psy3762 163 TPILSKSTPEGA-RDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCETSFM 240 (595)
Q Consensus 163 TPiL~~~~~~ga-~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e~~~~ 240 (595)
||+|++++++|+ +.|.+. +.+..+||+||||||||++|+ |++||||||||||||+++++||+ ||||||||++|+
T Consensus 156 TPiL~~s~~eG~~~~F~~~---~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~ 231 (435)
T 2xgt_A 156 PPTLVQTQVEGGSTLFNLD---YFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFI 231 (435)
T ss_dssp CCSEESCCSSCTTSCCEEE---ETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESC
T ss_pred CCeEeeccCCCchhceeec---cCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCCccccccceeEEEEEEecC
Confidence 999999888886 446554 467788999999999999874 79999999999999999997777 999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCC------------CC---CCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccc
Q psy3762 241 NEEEIRNLFEEMIRVIFYKTLNI------------KL---PNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSD 305 (595)
Q Consensus 241 ~~~dl~~~~E~ll~~l~~~~~~~------------~~---~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~ 305 (595)
+++|+|+++|+|++++++.+.+. ++ ..||+||||.||++.+.....+
T Consensus 232 d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~~~------------------ 293 (435)
T 2xgt_A 232 TLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVE------------------ 293 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTTCB------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchhhhhhccccccccCCCceEEEHHHHHHHHHhcCCC------------------
Confidence 99999999999999999987642 22 2589999999999865211000
Q ss_pred hhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHH
Q psy3762 306 FKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINK 385 (595)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 385 (595)
.+.+. ...+|. .+...
T Consensus 294 -------------------~~~~~----------------------------~~~~g~---------~l~~~-------- 309 (435)
T 2xgt_A 294 -------------------NEFGN----------------------------TFTYGE---------DIAEA-------- 309 (435)
T ss_dssp -------------------CTTSC----------------------------BCCTTS---------CCCHH--------
T ss_pred -------------------ccccc----------------------------ccchhh---------HHHHH--------
Confidence 00000 000010 01010
Q ss_pred hcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCCCCCCC
Q psy3762 386 TEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGY 465 (595)
Q Consensus 386 ~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~ 465 (595)
.++. +.. ...+|+||+|||+. .+||||+.+
T Consensus 310 ------------------~e~~-------l~~-----------~~~~p~fv~d~P~~------------~~~f~a~~~-- 339 (435)
T 2xgt_A 310 ------------------AERF-------MTD-----------TINKPILLNRFPSE------------IKAFYMQRD-- 339 (435)
T ss_dssp ------------------HHHH-------HHH-----------HHTSCEEEECCBGG------------GSCTTBCBC--
T ss_pred ------------------HHHH-------HHH-----------hcCCcEEEECCChh------------hCcccCCCC--
Confidence 0111 111 12569999999984 389998864
Q ss_pred CcccccCccccccceeeEEecCE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHH
Q psy3762 466 EDFIITNPEKIFSKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDR 544 (595)
Q Consensus 466 ~~l~~~dp~~~~~~~fDl~~~G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDR 544 (595)
. +|| .++++|||++||+ ||+|||+|+|||++|+++|++.|++++ .|+|||+|++||+|||||||||+||
T Consensus 340 ---~-~~p--~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~----~~~~yl~a~~yG~pPhgG~glGiDR 409 (435)
T 2xgt_A 340 ---A-QDN--TLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPK----PYYWYLDQRLYGTCPHGGYGLGLER 409 (435)
T ss_dssp ---S-SCT--TBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCG----GGHHHHHHHHSSCCCEEEEEEEHHH
T ss_pred ---C-CCc--CeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHH----HHHHHHHHHhCCCCCCceEEEhHHH
Confidence 1 455 5799999999996 999999999999999999999999886 4899999999999999999999999
Q ss_pred HHHHHcCCCCccccccCCCCCCc
Q psy3762 545 LITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 545 Lvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
|+|+++|.+||||||+|||+++.
T Consensus 410 Lvmll~g~~~Irdvi~FPr~~~~ 432 (435)
T 2xgt_A 410 FICWLTNTNHIRDVCLYPRFVGR 432 (435)
T ss_dssp HHHHHHTCSCGGGGSSSCCBTTB
T ss_pred HHHHHcCCCcHHhEecccCCcCC
Confidence 99999999999999999999953
No 12
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-91 Score=769.11 Aligned_cols=434 Identities=20% Similarity=0.343 Sum_probs=344.9
Q ss_pred cccccccccc---------ccCCCEEEEEEEEEeEeccC-CeEEEEEEeCCeeEEEEECCCcH---HHHHH-HhcCCCCc
Q psy3762 2 RTHYCGNITE---------KLLDQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDI---KIYKI-AKIIRNEF 67 (595)
Q Consensus 2 ~t~~~~~l~~---------~~~g~~V~i~GwV~~~R~~g-~l~Fi~LrD~~g~lQvv~~~~~~---~~~~~-~~~l~~es 67 (595)
+||++.++.. ...|++|+|+|||+++|.+| |++|++|||++|.||||++++.. +.++. .+.|+.||
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd 112 (521)
T 3bju_A 33 VDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD 112 (521)
T ss_dssp CCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTC
T ss_pred CccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCC
Confidence 5788887742 23478899999999999999 99999999999999999976532 34543 46799999
Q ss_pred EEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhc-cHhhHHHHHHHHHH
Q psy3762 68 CLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLR-YKHMQKNLRLRYKV 145 (595)
Q Consensus 68 ~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr-~~~~~~~l~~rs~i 145 (595)
+|.|+|+|.++ ++|++||+|++|++||+|. ++|..... ..++++|+++||||+| ++.++++|++||.|
T Consensus 113 ~V~V~G~v~~t---------~~ge~ei~~~~i~~l~~~~~~lP~~~~~-~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i 182 (521)
T 3bju_A 113 IIGVQGNPGKT---------KKGELSIIPYEITLLSPCLHMLPHLHFG-LKDKETRYRQRYLDLILNDFVRQKFIIRSKI 182 (521)
T ss_dssp EEEEEEEEEEC---------TTCCEEEEEEEEEEEECCCSCCCCC-----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHH
T ss_pred EEEEEEEEEec---------CCCCEEEEEeEEEEeecCCCCCCCcccc-ccChhhhhhhhhhhHhcCHHHHHHHHHHHHH
Confidence 99999999987 3689999999999999996 56765443 5678999999999999 79999999999999
Q ss_pred HHHHHHHhhhCCCeeccCceeecCCCCC-CccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCC
Q psy3762 146 TMEVRKFLDSKKFIEIETPILSKSTPEG-ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRS 224 (595)
Q Consensus 146 ~~~iR~ff~~~gF~EV~TPiL~~~~~~g-a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~ 224 (595)
++++|+||.++||+||+||+|+++.+++ |+.|.++. .+.+..+||+||||||+|+++++|++||||||||||||++++
T Consensus 183 ~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~-~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~t 261 (521)
T 3bju_A 183 ITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYH-NELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL 261 (521)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEE-TTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBT
T ss_pred HHHHHHHHHHCCCEEEeCceeeccCCCccccceeeec-ccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCC
Confidence 9999999999999999999999764433 45676543 345778999999999999999999999999999999999999
Q ss_pred CCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC-----------------CCCCCCccccHHHHHHHhCC-CCC
Q psy3762 225 DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI-----------------KLPNPFPVIEWSTAIKLYGS-DKP 286 (595)
Q Consensus 225 ~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~-----------------~~~~~f~rity~ea~~~~~~-d~p 286 (595)
+|+|||||||||++|+|++|+|+++|+||+++++.+.+. ++..||+|+||.||++.+.+ +.+
T Consensus 262 rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~~~d~~~pf~rit~~eai~~~~g~~~~ 341 (521)
T 3bju_A 262 THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLP 341 (521)
T ss_dssp TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCEEEECCSSCEEEEHHHHHHHHHTSCCC
T ss_pred ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCceEEecccccccccceeccCCCcccccHHHHHHHHhCCCCC
Confidence 888899999999999999999999999999999998752 24569999999999998733 221
Q ss_pred ccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccch-hhhHHHHHHHHHhCCCCceEEEEeccccccCC
Q psy3762 287 DMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISR-NEINYYTQFVKTYGAKGLTYIKIHKISKEFDG 365 (595)
Q Consensus 287 ~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 365 (595)
. +..++. ...+.+.+++++.|..
T Consensus 342 ~----------------------------------------~~~l~~~~~~~~l~~~~~~~~~~---------------- 365 (521)
T 3bju_A 342 E----------------------------------------TNLFETEETRKILDDICVAKAVE---------------- 365 (521)
T ss_dssp C----------------------------------------GGGTTSHHHHHHHHHHHHHTTCC----------------
T ss_pred c----------------------------------------cccCCcHHHHHHHHHHHHHcCCC----------------
Confidence 0 000000 0122333334333311
Q ss_pred CCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccc
Q psy3762 366 LKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYD 445 (595)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~ 445 (595)
+..+. .....+++++++ .+. +....|+||+|||...
T Consensus 366 ~~~~~----------------------------~~~~~l~~~~e~---~ve-----------~~l~~P~fI~dyP~~~-- 401 (521)
T 3bju_A 366 CPPPR----------------------------TTARLLDKLVGE---FLE-----------VTCINPTFICDHPQIM-- 401 (521)
T ss_dssp CCSCC----------------------------CHHHHHHHHHHH---HTG-----------GGCCSCEEEECCBGGG--
T ss_pred CCCCC----------------------------CHHHHHHHHHHH---HHH-----------HhcCCcEEEECCcccc--
Confidence 00000 000011111111 111 2346799999999853
Q ss_pred cccccccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc------CCChhhhhh
Q psy3762 446 KINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL------NIDNKIVKT 519 (595)
Q Consensus 446 ~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~------g~~~~~~~~ 519 (595)
+||+++.+ +|| .++++|||+++|.||+|||+|+|||++|+++|+.+ |.+++ ..
T Consensus 402 ----------spla~~~~-------~dp--~~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~--~~ 460 (521)
T 3bju_A 402 ----------SPLAKWHR-------SKE--GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEA--MF 460 (521)
T ss_dssp ----------CTTBCBCS-------SST--TBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTS--CC
T ss_pred ----------CcccccCC-------CCC--CeeeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHHHhcCCChh--hc
Confidence 99999875 676 68999999999999999999999999999999864 65443 22
Q ss_pred cHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 520 QFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 520 ~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
.++|||+|++||+|||||||||||||+|++||++||||||+|||++..
T Consensus 461 ~d~~yl~al~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 461 IDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp CCHHHHHHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred chHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 378999999999999999999999999999999999999999999953
No 13
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=1.2e-91 Score=755.25 Aligned_cols=397 Identities=27% Similarity=0.478 Sum_probs=292.2
Q ss_pred cccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCC-CCcEEEEEeEEEeCCCC
Q psy3762 3 THYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIR-NEFCLQIIGKVCSRPNK 81 (595)
Q Consensus 3 t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~-~es~V~V~G~v~~~~~~ 81 (595)
+|+|++|+ +++|++|+|+|||+++|.+|+++|++|||++|.+|||+++ +.|+ .||+|.|+|+|++++.
T Consensus 2 ~~~~~~l~-~~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~---------~~l~~~~~~v~v~G~v~~~~~- 70 (422)
T 1n9w_A 2 RVLVRDLK-AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG---------LKLPLPESALRVRGLVVENAK- 70 (422)
T ss_dssp BCCGGGGG-GCTTSEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEES---------CCCCCTTCEEEEEEEEEECTT-
T ss_pred eEEHHHHH-hcCCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEc---------cccCCCCCEEEEEEEEEecCC-
Confidence 48999999 8899999999999999999999999999999999999975 5699 9999999999999864
Q ss_pred CCCCCcCCccEEEEEeeEEEeecCC-CCCCcccc--cCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCC
Q psy3762 82 TNNTNLISGNIEILCRELKILNSSI-TLPFQIDE--KNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKF 158 (595)
Q Consensus 82 ~~~~~~~~g~iEl~v~~i~vls~~~-~lP~~~~~--~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF 158 (595)
.+|++||+|++++|||+|. ++|+++.+ ..+++++|+++||||+|++.+++++++|+.|++++|+||.++||
T Consensus 71 ------~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF 144 (422)
T 1n9w_A 71 ------APGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDF 144 (422)
T ss_dssp ------STTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------CCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3579999999999999995 67776543 24789999999999999999999999999999999999999999
Q ss_pred eeccCceeecCCCCCCcc-ccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccc
Q psy3762 159 IEIETPILSKSTPEGARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCE 236 (595)
Q Consensus 159 ~EV~TPiL~~~~~~ga~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e 236 (595)
+||+||+|++++++|+++ |.+. +.+..+||+||||+|+|+++ +|++||||||||||+|+++++||+ ||||+|+|
T Consensus 145 ~EV~TPil~~~~~e~~~~~f~~~---~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e 220 (422)
T 1n9w_A 145 TEIFTPKVVRAGAEGGSGLFGVD---YFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVE 220 (422)
T ss_dssp EECCCC-------------------------------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEE
T ss_pred EEEECCEEEEeCCCCCceeEEEe---eCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeee
Confidence 999999999998988876 5443 45677899999999999986 779999999999999999998776 99999999
Q ss_pred cccC-CHHHHHHHHHHHHHHHHHHHcC----------CCCC---CCCccccHHHHHHHhCCCCCccccchhhcchhhhhh
Q psy3762 237 TSFM-NEEEIRNLFEEMIRVIFYKTLN----------IKLP---NPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMK 302 (595)
Q Consensus 237 ~~~~-~~~dl~~~~E~ll~~l~~~~~~----------~~~~---~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~ 302 (595)
++|+ +++|+|+++|+|++++++.+.+ ..+. .||+||||.||++.|.... ++
T Consensus 221 ~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~~~pf~rity~eA~~~~~~~~-~~-------------- 285 (422)
T 1n9w_A 221 MGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEEL-GY-------------- 285 (422)
T ss_dssp EESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTS-CC--------------
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCccccccCCCcceeEHHHHHHHHHhcC-Cc--------------
Confidence 9999 9999999999999999987753 2333 6899999999998762100 00
Q ss_pred ccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHH
Q psy3762 303 DSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKI 382 (595)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 382 (595)
. ||. ++.++ .
T Consensus 286 -----------------------~----------------------------------~~~-dl~~~--------~---- 295 (422)
T 1n9w_A 286 -----------------------P----------------------------------VGQ-DLSEE--------A---- 295 (422)
T ss_dssp -----------------------C----------------------------------CCS-SCCHH--------H----
T ss_pred -----------------------c----------------------------------ccc-ccCcH--------H----
Confidence 0 000 01111 0
Q ss_pred HHHhcCcCCCeEEecCCchhhHHHHHHH-HHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCCC
Q psy3762 383 INKTEAQNGDIIFLGGDEKNIVNNFMSA-LRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAP 461 (595)
Q Consensus 383 ~~~~~~~~gd~~~~~~~~~~~~~~~lg~-~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~ 461 (595)
++.|++ +.+.++ ..|+||+|||+. ++||||+
T Consensus 296 ----------------------e~~l~~~~~~~~~--------------~~p~fv~d~P~~------------~~pf~~~ 327 (422)
T 1n9w_A 296 ----------------------ERLLGEYAKERWG--------------SDWLFVTRYPRS------------VRPFYTY 327 (422)
T ss_dssp ----------------------HHHHHHHHHHHTC--------------CSEEEEECCBGG------------GSCTTBC
T ss_pred ----------------------HHHHHHHHHhhhC--------------CceEEEECCChh------------hCcCcCC
Confidence 111111 111222 359999999985 5999998
Q ss_pred CCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceecc
Q psy3762 462 KDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFG 541 (595)
Q Consensus 462 ~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glG 541 (595)
.+ +| .++++|||++||+||+|||+|+|||++|+++|+.+|++++ .|+|||+|++||+|||||||||
T Consensus 328 ~~-------~d---~~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~----~~~~yl~a~~yG~PPhgG~glG 393 (422)
T 1n9w_A 328 PE-------ED---GTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPE----AFHGYLEVFKYGMPPHGGFAIG 393 (422)
T ss_dssp BC-------TT---SBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGG----GGHHHHGGGGBCCCSEEEEEEE
T ss_pred CC-------CC---CEEEEEEEEECCEEEEeCEeecCCHHHHHHHHHHcCCCHH----HHHHHHHHHhcCCCCceEEEEc
Confidence 64 33 5799999999999999999999999999999999999886 4899999999999999999999
Q ss_pred HHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 542 LDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 542 lDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
+|||+|+++|.+||||||+|||+++.
T Consensus 394 iDRLvm~l~g~~~Irdvi~FPr~~~~ 419 (422)
T 1n9w_A 394 AERLTQKLLGLPNVRYARAFPRDRHR 419 (422)
T ss_dssp HHHHHHHHTTCSSGGGGCSCC-----
T ss_pred HHHHHHHHhCCCcHHhEEecCCCCCC
Confidence 99999999999999999999999853
No 14
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=1.4e-91 Score=760.25 Aligned_cols=412 Identities=24% Similarity=0.412 Sum_probs=336.7
Q ss_pred cccccccccccCCCEEEEEEEEEeEeccC-CeEEEEEEeCCeeEEEEECCCc-HHHHHHHhcCCCCcEEEEEeEEEeCCC
Q psy3762 3 THYCGNITEKLLDQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPND-IKIYKIAKIIRNEFCLQIIGKVCSRPN 80 (595)
Q Consensus 3 t~~~~~l~~~~~g~~V~i~GwV~~~R~~g-~l~Fi~LrD~~g~lQvv~~~~~-~~~~~~~~~l~~es~V~V~G~v~~~~~ 80 (595)
...|.++ .+++|++|+|+|||+++|.+| +++|++|||++|.+|||++++. .+.+ .+..|+.||+|.|+|+|++++.
T Consensus 19 ~~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~~ 96 (456)
T 3m4p_A 19 VCNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPE-KVKLLTRECSLEITGRLNAYAG 96 (456)
T ss_dssp CEECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHH-HHTTCCTTCEEEEEEEEECCCS
T ss_pred EEEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhH-HhhcCCCccEEEEEeEEEecCC
Confidence 3568888 578999999999999999997 6999999999999999998732 2223 3568999999999999999887
Q ss_pred CCCCCCcCC-ccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCC
Q psy3762 81 KTNNTNLIS-GNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKF 158 (595)
Q Consensus 81 ~~~~~~~~~-g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF 158 (595)
+..++++.+ |++||+|++++|||+|. ++|++.++ ..++++|+++||||+|++.++++|++||.|++++|+||.++||
T Consensus 97 ~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~-~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff~~~gF 175 (456)
T 3m4p_A 97 KNHPPEIADILNLEMQVTEWKVIGESPIDLENIINK-DSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHF 175 (456)
T ss_dssp SSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCT-TCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCcccCCCCcEEEEEeEEEEEecCCCCCcccccc-cCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 666665555 99999999999999996 45555444 6788999999999999999999999999999999999999999
Q ss_pred eeccCceeecCCCCCCcc-ccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccc
Q psy3762 159 IEIETPILSKSTPEGARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCE 236 (595)
Q Consensus 159 ~EV~TPiL~~~~~~ga~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e 236 (595)
+||+||+|++++++|+.+ |.+. +.+..+||+||||||||++++ |++||||||||||||+++++||+ ||||||||
T Consensus 176 ~EVeTPiL~~s~~eGg~~~f~~~---~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e 251 (456)
T 3m4p_A 176 TEIQPPTIVKTQCEGGSTLFKLQ---YFNEPAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAE 251 (456)
T ss_dssp EECCCCSEEC------CCCCEEE---ETTEEEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEE
T ss_pred EEEeCCeeecCCCCCcccccccc---ccCCCcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHH
Confidence 999999999998887654 5432 457778999999999999875 69999999999999999987776 99999999
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHcCC----------C---CCCCCccccHHHHHHHh---CCCCCccccchhhcchhhh
Q psy3762 237 TSFMNEEEIRNLFEEMIRVIFYKTLNI----------K---LPNPFPVIEWSTAIKLY---GSDKPDMCIKLIFTDLTNI 300 (595)
Q Consensus 237 ~~~~~~~dl~~~~E~ll~~l~~~~~~~----------~---~~~~f~rity~ea~~~~---~~d~p~lr~~~~~~~~~~~ 300 (595)
++|++++|+|+++|+|++++++.+.+. + ...||+||||.||++.. +.+..+
T Consensus 252 ~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~------------- 318 (456)
T 3m4p_A 252 LPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKD------------- 318 (456)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSS-------------
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccc-------------
Confidence 999999999999999999999987542 1 24689999999998743 110000
Q ss_pred hhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHH
Q psy3762 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILE 380 (595)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 380 (595)
....||. . +...
T Consensus 319 --------------------------------------------------------~~~~~g~-~--------l~~~--- 330 (456)
T 3m4p_A 319 --------------------------------------------------------KPFEYGE-D--------ISEK--- 330 (456)
T ss_dssp --------------------------------------------------------SCCCTTC-C--------CCHH---
T ss_pred --------------------------------------------------------cCcchHH-H--------HHHH---
Confidence 0000111 0 1110
Q ss_pred HHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCC
Q psy3762 381 KIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTA 460 (595)
Q Consensus 381 ~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~ 460 (595)
.++.+ +. ....|+||+|||.. .+||||
T Consensus 331 -----------------------~e~~l-------~~-----------~~~~P~fv~~yP~~------------~~pfy~ 357 (456)
T 3m4p_A 331 -----------------------PERQM-------TD-----------EIGCPIFMIHFPSK------------MKAFYM 357 (456)
T ss_dssp -----------------------HHHHH-------HH-----------HHTSCEEEECCBGG------------GSCTTB
T ss_pred -----------------------HHHHH-------HH-----------HhCceEEEECCCch------------hCcccc
Confidence 11111 11 12469999999985 389987
Q ss_pred CCCCCCcccccCccccccceeeEEecCE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCcccee
Q psy3762 461 PKDGYEDFIITNPEKIFSKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIA 539 (595)
Q Consensus 461 ~~~~~~~l~~~dp~~~~~~~fDl~~~G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~g 539 (595)
+.+ . +|| .++++|||+++|+ ||+|||+|+|||++|+++|++.|++++ .++|||++++||+|||||||
T Consensus 358 k~~-----~-~dp--~~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yld~~~~G~pP~gG~G 425 (456)
T 3m4p_A 358 SKV-----P-GHP--DLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPD----PYYWYTQQRKYGSCPHGGYG 425 (456)
T ss_dssp CEE-----T-TEE--EEECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCG----GGHHHHGGGTSSCCCEEEEE
T ss_pred ccC-----C-CCC--CeeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHH----HHHHHHHHHHcCCCcccEEE
Confidence 643 1 455 6899999999996 999999999999999999999999887 47899999999999999999
Q ss_pred ccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 540 FGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 540 lGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
||||||+|+++|.+||||||+|||+++.
T Consensus 426 lGidRLvm~ltg~~~Irdvi~FPr~~~r 453 (456)
T 3m4p_A 426 LGVERLVMWLLGEDHIRKVCLYPRYLER 453 (456)
T ss_dssp EEHHHHHHHHHTCSCGGGGSSSCBBTTB
T ss_pred EcHHHHHHHHcCCccHHHeeccCCCCCC
Confidence 9999999999999999999999999953
No 15
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=2.1e-91 Score=756.61 Aligned_cols=408 Identities=25% Similarity=0.408 Sum_probs=346.8
Q ss_pred CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCc--HHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND--IKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~--~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
||||+|++|..+++|++|+|+|||+++|.+|+++|++|||++|.+|||++++. .+.++.++.|+.||+|.|+|+|+++
T Consensus 2 ~~~~~~~~l~~~~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~ 81 (434)
T 1x54_A 2 IEKVYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKAD 81 (434)
T ss_dssp CCCCCGGGCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred ceEEEHHHhhHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEec
Confidence 58999999998999999999999999999999999999999999999997643 2567888899999999999999998
Q ss_pred CCCCCCCCcCCccEEEEEeeEEEeecCCCCCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCC
Q psy3762 79 PNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKF 158 (595)
Q Consensus 79 ~~~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF 158 (595)
+. .+|++||+|++++|||+|.++|+....+.+++++|+++||||+|++.+++++++|+.|++++|+||.++||
T Consensus 82 ~~-------~~~~~el~~~~~~vl~~~~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF 154 (434)
T 1x54_A 82 ER-------APGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGW 154 (434)
T ss_dssp TT-------SGGGEEEEEEEEEEEECCSCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CC-------CCccEEEEEeEEEEeecCCCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 64 35799999999999999965776212225789999999999999999999999999999999999999999
Q ss_pred eeccCceeecCCCCCCcc-ccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCc-cccccccc
Q psy3762 159 IEIETPILSKSTPEGARD-YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCE 236 (595)
Q Consensus 159 ~EV~TPiL~~~~~~ga~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~-EFt~lE~e 236 (595)
+||+||+|++++++|+++ |.+. +.+..+||+||||+|+|+ |++|++|||+||||||+|+++++||+ ||||+|+|
T Consensus 155 ~eVeTP~l~~~~~e~~~~~f~~~---~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e 230 (434)
T 1x54_A 155 HEVFPPILVTGAVEGGATLFKLK---YFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELE 230 (434)
T ss_dssp EECCCCSEESCCSSCGGGCCEEE---ETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEE
T ss_pred EEEeCcEEEeecCCCCceeEEEe---ecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEEEEeeEE
Confidence 999999999999998877 5442 457788999999999999 77889999999999999999997776 99999999
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHcCC----------C------CCCCCccccHHHHHHHhCCCCCccccchhhcchhhh
Q psy3762 237 TSFMNEEEIRNLFEEMIRVIFYKTLNI----------K------LPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300 (595)
Q Consensus 237 ~~~~~~~dl~~~~E~ll~~l~~~~~~~----------~------~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~ 300 (595)
++|.+++|+|+++|++++++++.+.+. . +..||+|+||.||++.|....
T Consensus 231 ~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~g--------------- 295 (434)
T 1x54_A 231 AAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSKG--------------- 295 (434)
T ss_dssp EETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHHTT---------------
T ss_pred EcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccccccccCCCCcEEEHHHHHHHHHhcC---------------
Confidence 999999999999999999999887531 1 134899999999998762100
Q ss_pred hhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHH
Q psy3762 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILE 380 (595)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 380 (595)
+. + .+|. ++. .+.
T Consensus 296 -----~~-----------------~----------------------------------~~~~-dl~--------~~~-- 308 (434)
T 1x54_A 296 -----VN-----------------V----------------------------------EWGD-DLG--------ADE-- 308 (434)
T ss_dssp -----CC-----------------C----------------------------------CTTC-CCC--------HHH--
T ss_pred -----CC-----------------c----------------------------------ccCC-ccC--------hHH--
Confidence 00 0 0010 010 000
Q ss_pred HHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccccCCCccEEEEecCCCccccccccccccccCCCC
Q psy3762 381 KIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTA 460 (595)
Q Consensus 381 ~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~ 460 (595)
++ .+++ ...+|+||+|||.. +||||+
T Consensus 309 ------------------------e~-------~l~~-----------~~~~p~fv~d~P~~------------~~pfy~ 334 (434)
T 1x54_A 309 ------------------------ER-------VLTE-----------EFDRPFFVYGYPKH------------IKAFYM 334 (434)
T ss_dssp ------------------------HH-------HHHT-----------TCSSCEEEEEEEGG------------GSCTTB
T ss_pred ------------------------HH-------HHHH-----------HhCCcEEEEcCChh------------hCcccC
Confidence 01 1222 23569999999985 599976
Q ss_pred CCCCCCcccccCccccccceeeEEec-CE-EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccce
Q psy3762 461 PKDGYEDFIITNPEKIFSKAYDLIIN-GW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGI 538 (595)
Q Consensus 461 ~~~~~~~l~~~dp~~~~~~~fDl~~~-G~-Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~ 538 (595)
+.+ . +|| .++++|||++| |+ ||+|||+|+|||++|+++|+.+|++++ .|+|||+|++||+||||||
T Consensus 335 ~~~-----~-~~p--~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~----~~~~yl~al~yG~PP~~G~ 402 (434)
T 1x54_A 335 KED-----P-NDP--RKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPK----DYEWYLDLRRYGSVPHSGF 402 (434)
T ss_dssp CBC-----S-SCT--TEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGG----GGHHHHHTTTSSCCCEEEE
T ss_pred CcC-----C-CCC--CeEEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChH----HHHHHHHHHhcCCCCceEE
Confidence 532 1 566 58999999999 98 999999999999999999999999886 4899999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccCCCCCCc
Q psy3762 539 AFGLDRLITIMTGSKSIRDVIAFPKTQSA 567 (595)
Q Consensus 539 glGlDRLvm~l~g~~~IRdvi~FPr~~~~ 567 (595)
|||+|||+|+++|.+||||||+|||+++.
T Consensus 403 glGiDRLvmll~g~~~Irdvi~FP~~~~~ 431 (434)
T 1x54_A 403 GLGVERLVAWVLKLDHIRWAALFPRTPAR 431 (434)
T ss_dssp EEEHHHHHHHHTTCSSGGGGSSSCCBTTB
T ss_pred EEcHHHHHHHHcCCCcHHhEEEccCcCCC
Confidence 99999999999999999999999999953
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=4.4e-70 Score=572.85 Aligned_cols=303 Identities=20% Similarity=0.327 Sum_probs=232.5
Q ss_pred hccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCCC--ccccccccC---CCCCeeeccCChHHHHHHHHh
Q psy3762 130 LRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGA--RDYLVPSRI---NPGEFFALPQSPQLFKQLLMV 204 (595)
Q Consensus 130 lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga--~~f~~~~~~---~~~~~~~L~~Spql~~q~ll~ 204 (595)
.|++ .++++++||.|+++||+||.++||+||+||+|++++++|+ ..|.+.+.. ..+..+||+||||||||++|+
T Consensus 28 ~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~ 106 (345)
T 3a5y_A 28 QPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLV 106 (345)
T ss_dssp SCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHH
T ss_pred CCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHH
Confidence 3555 7899999999999999999999999999999999887754 345443211 112457899999999999999
Q ss_pred hCCCceEEEecceecCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHh-CC
Q psy3762 205 ANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLY-GS 283 (595)
Q Consensus 205 ~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~-~~ 283 (595)
+|++||||||||||||+++++|+|||||||||++|++++|+|+++|+||+++++ ..||+||||.||+++| |.
T Consensus 107 ~g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-------~~~~~rity~ea~~~~~g~ 179 (345)
T 3a5y_A 107 AGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-------CPAAESLSYQQAFLRYLEI 179 (345)
T ss_dssp TTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-------CCCCEEEEHHHHHHHHTCC
T ss_pred cCCCcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-------CCCCcEeeHHHHHHHHhCC
Confidence 999999999999999999888888999999999999999999999999999986 1389999999999999 66
Q ss_pred CCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEecccccc
Q psy3762 284 DKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEF 363 (595)
Q Consensus 284 d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (595)
|+|.. ..+++.++++..| +.++.. +.
T Consensus 180 d~~~~----------------------------------------------~~~~l~~~~~~~g---~~~~~~-----~~ 205 (345)
T 3a5y_A 180 DPLSA----------------------------------------------DKTQLREVAAKLD---LSNVAD-----TE 205 (345)
T ss_dssp CTTCC----------------------------------------------C----------------------------
T ss_pred CCCCC----------------------------------------------CHHHHHHHHHHcC---CcccCC-----Cc
Confidence 55421 0111122222222 000000 00
Q ss_pred CCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHH-HHHhcccCcccccccccCCCccEEEEecCCC
Q psy3762 364 DGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSAL-RIKIGYSDFGKRNNILNNKWHPLWVINFPMF 442 (595)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~-r~~l~~~~~~~~~~l~~~~~~p~~V~dfP~~ 442 (595)
++. ....++++++. ++.++ ..+|+||+|||+.
T Consensus 206 -------------~~~---------------------~~~~e~~l~~~ve~~lg-------------~~~p~fv~dyP~~ 238 (345)
T 3a5y_A 206 -------------EDR---------------------DTLLQLLFTFGVEPNIG-------------KEKPTFVYHFPAS 238 (345)
T ss_dssp --------------------------------------HHHHHHHHHHTGGGSS-------------SSSCEEEECCBGG
T ss_pred -------------CCH---------------------hHHHHHHHHHHHHHHcC-------------CCCEEEEECCChh
Confidence 000 01112233221 11111 2579999999997
Q ss_pred ccccccccccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHHHc-------CCChh
Q psy3762 443 KYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL-------NIDNK 515 (595)
Q Consensus 443 ~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~-------g~~~~ 515 (595)
. .||+++.+ ++| .++++|||++||+||+|||+|+||+++|+++|+.. |++++
T Consensus 239 ~------------~~~~~~~~-------~~~--~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~ 297 (345)
T 3a5y_A 239 Q------------ASLAQIST-------EDH--RVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQH 297 (345)
T ss_dssp G------------CTTBCBCS-------SCT--TBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred h------------ChhhCCCC-------CCC--CeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChh
Confidence 4 78987753 555 57999999999999999999999999999999875 77765
Q ss_pred hhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCC
Q psy3762 516 IVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQ 565 (595)
Q Consensus 516 ~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~ 565 (595)
++ .+|||+|++||+|||||||||||||+|+++|.+||||||+|||+.
T Consensus 298 ~~---d~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 298 PI---DQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp CC---CHHHHHHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred hH---HHHHHHHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 42 369999999999999999999999999999999999999999985
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=3.4e-62 Score=504.36 Aligned_cols=270 Identities=26% Similarity=0.411 Sum_probs=236.5
Q ss_pred cccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecC--------CCCCCccccccccCCCCCeeeccCCh
Q psy3762 124 KYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKS--------TPEGARDYLVPSRINPGEFFALPQSP 195 (595)
Q Consensus 124 ~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~--------~~~ga~~f~~~~~~~~~~~~~L~~Sp 195 (595)
+||++|+|++ +++++++|+.|++++|+||.++||+||+||+|+++ ++++++.|.+. +.+..++|++||
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~a~~f~~~---~~~~~~~L~~Sp 76 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVE---IYGVKMRLTHSM 76 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEE---ETTEEEEECSCS
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCcceeEEEE---cCCCCEEeccCh
Confidence 4899999999 99999999999999999999999999999999998 88887767654 346678999999
Q ss_pred HHHHHHHHhhCCCceEEEecceecCC--CCCCCCc-cccccccccccCCHHHHHHHHHHHHHHHHHHHc---CCCCC--C
Q psy3762 196 QLFKQLLMVANFDRYYQITKCFRDED--LRSDRQP-EFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTL---NIKLP--N 267 (595)
Q Consensus 196 ql~~q~ll~~g~~rvf~i~~~FR~E~--~~~~r~~-EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~---~~~~~--~ 267 (595)
|+|+|+++++|++|||+||||||+|+ +++.||+ ||||+|+|++|++++|+|+++|++++++++.+. +..+. .
T Consensus 77 e~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~~~~i~~~~ 156 (294)
T 1nnh_A 77 ILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK 156 (294)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCS
T ss_pred HHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Confidence 99999999999999999999999999 8876666 999999999999999999999999999998775 22222 2
Q ss_pred CCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhC
Q psy3762 268 PFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYG 347 (595)
Q Consensus 268 ~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 347 (595)
+|+|+||.||++.||..
T Consensus 157 ~~~r~~y~ea~~~~g~~--------------------------------------------------------------- 173 (294)
T 1nnh_A 157 RFEVFEYSEVLEEFGSD--------------------------------------------------------------- 173 (294)
T ss_dssp SCEEEEHHHHHHHTSSH---------------------------------------------------------------
T ss_pred CceEeEHHHHHHHhCCh---------------------------------------------------------------
Confidence 39999999999876420
Q ss_pred CCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc
Q psy3762 348 AKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL 427 (595)
Q Consensus 348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~ 427 (595)
.+ + ++
T Consensus 174 -----------------------------~e---------------------------r---------~~---------- 178 (294)
T 1nnh_A 174 -----------------------------EK---------------------------A---------SQ---------- 178 (294)
T ss_dssp -----------------------------HH---------------------------H---------HH----------
T ss_pred -----------------------------Hh---------------------------h---------hh----------
Confidence 00 0 00
Q ss_pred cCCCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCccccccceeeEEec-CE-EEeecccccCCHHHHHH
Q psy3762 428 NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIIN-GW-EIGGGSIRIHDAEIQKK 505 (595)
Q Consensus 428 ~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~-G~-Ei~gGs~R~~d~~~~~~ 505 (595)
...+|+||+||| +|||++. || .++++||++++ |+ ||+|||+|+|||++|.+
T Consensus 179 -~~~~P~~v~~~P---------------~pf~~~~---------d~--~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~ 231 (294)
T 1nnh_A 179 -EMEEPFWIINIP---------------REFYDRE---------VD--GFWRNYDLILPYGYGEVASGGEREWEYEKIVA 231 (294)
T ss_dssp -HCSSCEEEECCC---------------CCTTBCE---------ET--TEECEEEEEETTTTEEEEEEEEBCCCHHHHHH
T ss_pred -hcCCCEEEEcCC---------------hHHhCCC---------CC--CeEEEEEEEECCCcEEEecCeeecCCHHHHHH
Confidence 014599999999 4788873 34 57999999999 98 99999999999999999
Q ss_pred HHHHcCCChhhhhhcHHHHHHHhhCCCC-CccceeccHHHHHHHHcCCCCccccccCCCCCC
Q psy3762 506 IFKVLNIDNKIVKTQFGFLLNSLKYGAP-PHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQS 566 (595)
Q Consensus 506 ~~~~~g~~~~~~~~~~~~yL~al~~G~P-Ph~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~ 566 (595)
+|+..|++++ .|+|||+|++||+| ||||||||+|||+|+++|++||||||+|||+++
T Consensus 232 ~~~~~g~~~~----~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~ 289 (294)
T 1nnh_A 232 KIRKAGLNED----SFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 289 (294)
T ss_dssp HHHHTTCCGG----GGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTT
T ss_pred HHHHcCCCcc----CHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCC
Confidence 9999999886 49999999999999 999999999999999999999999999999995
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.90 E-value=2.8e-24 Score=221.34 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=116.1
Q ss_pred CCccEEEEEeeEEEeecCC-CCCCcccccCcchhhhccccchhhccHhhHHHHHH-----HHHHHHHHHHHhhhCCCeec
Q psy3762 88 ISGNIEILCRELKILNSSI-TLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRL-----RYKVTMEVRKFLDSKKFIEI 161 (595)
Q Consensus 88 ~~g~iEl~v~~i~vls~~~-~lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~-----rs~i~~~iR~ff~~~gF~EV 161 (595)
..|++||+|++|+|||+|. ++|+++++. ..++++||||+|++.++++++. ++.+.+.+|++|.++||.||
T Consensus 23 ~~~~~ei~~~~~~vl~~a~~~~P~~~~~~----~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV 98 (290)
T 3qtc_A 23 APALTKSQTDRLEVLLNPKDEISLNSGKP----FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEI 98 (290)
T ss_dssp -CCCCHHHHHHHHHHCCTTCC----CCSC----HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEEhhhhhhhccCCCCCCCCcchh----hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEE
Confidence 4689999999999999996 678876542 3489999999999999999999 99999999999999999999
Q ss_pred cCceeecCCCC------CCccc-cccccCCCCCeeecc--CChHHHHHHHHh----hCCCceEEEecceecCCCCCCCCc
Q psy3762 162 ETPILSKSTPE------GARDY-LVPSRINPGEFFALP--QSPQLFKQLLMV----ANFDRYYQITKCFRDEDLRSDRQP 228 (595)
Q Consensus 162 ~TPiL~~~~~~------ga~~f-~~~~~~~~~~~~~L~--~Spql~~q~ll~----~g~~rvf~i~~~FR~E~~~~~r~~ 228 (595)
.||+|++.... +..++ ...+. .++.++|+ +||++++++... .+..|+||||+|||+|+.+.+|.+
T Consensus 99 ~Tp~l~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~ 176 (290)
T 3qtc_A 99 KSPILIPLEYIERMGIDNDTELSKQIFR--VDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLE 176 (290)
T ss_dssp CCCSEEETHHHHHTTCCTTSSGGGGCCE--ETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCS
T ss_pred ECCceeeHHHHHhcCCCcCCchhhhhee--eCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCCCCcCcc
Confidence 99999975321 11111 11111 13567888 999999776542 455799999999999988777878
Q ss_pred cccccccccccCC
Q psy3762 229 EFTQIDCETSFMN 241 (595)
Q Consensus 229 EFt~lE~e~~~~~ 241 (595)
||||+|+++++.+
T Consensus 177 Ef~ql~~~~~g~~ 189 (290)
T 3qtc_A 177 EFTMLVFWQMGSG 189 (290)
T ss_dssp EEEEEEEEEESTT
T ss_pred hheEEEEEEEcCC
Confidence 9999999998865
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.84 E-value=1.5e-19 Score=182.08 Aligned_cols=272 Identities=17% Similarity=0.171 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHHhh-----hCCCeeccCceeecCCCC-----CCcccccccc--CCCCCeeeccCChHHHHHHHHhh
Q psy3762 138 NLRLRYKVTMEVRKFLD-----SKKFIEIETPILSKSTPE-----GARDYLVPSR--INPGEFFALPQSPQLFKQLLMVA 205 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~~-----ga~~f~~~~~--~~~~~~~~L~~Spql~~q~ll~~ 205 (595)
.++.....+..+++||. +.|+++|..|+++..+.+ .+.+-.+.+. ...+..+-+.+|.-.||++++..
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~ 83 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQ 83 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHh
Confidence 35667788999999999 899999999999974322 1112122222 23366788999999999998775
Q ss_pred -CC---CceEEEecceecCC--CCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC------------CCCC
Q psy3762 206 -NF---DRYYQITKCFRDED--LRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNI------------KLPN 267 (595)
Q Consensus 206 -g~---~rvf~i~~~FR~E~--~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~------------~~~~ 267 (595)
|+ ..+|+-.++.|.|+ .+..|..+|.|.|||.+....+..++.++++++.++..+... .++.
T Consensus 84 y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~~~~~~y~l~p~Lp~ 163 (330)
T 12as_A 84 HDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPD 163 (330)
T ss_dssp TTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSCS
T ss_pred CCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCC
Confidence 47 89999999999855 345555599999999999988888889999887776654321 1223
Q ss_pred CCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhC
Q psy3762 268 PFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYG 347 (595)
Q Consensus 268 ~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 347 (595)
++..||.+|+.++|+...|
T Consensus 164 ~i~fitsqeL~~~YP~lt~------------------------------------------------------------- 182 (330)
T 12as_A 164 QIHFVHSQELLSRYPDLDA------------------------------------------------------------- 182 (330)
T ss_dssp SCEEEEHHHHHHHSSSSCH-------------------------------------------------------------
T ss_pred ceEEEeHHHHHHHcCCCCh-------------------------------------------------------------
Confidence 3444444444444322111
Q ss_pred CCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc
Q psy3762 348 AKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL 427 (595)
Q Consensus 348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~ 427 (595)
.+. +..+.+
T Consensus 183 -----------------------------keR--------------------------------E~~i~k---------- 191 (330)
T 12as_A 183 -----------------------------KGR--------------------------------ERAIAK---------- 191 (330)
T ss_dssp -----------------------------HHH--------------------------------HHHHHH----------
T ss_pred -----------------------------HHH--------------------------------HHHHHH----------
Confidence 000 001121
Q ss_pred cCCCccEEEEecCCCccccccccccccccCCCCCCCC---CCcccccCccccccceeeEEe-c----CE-EEeecccccC
Q psy3762 428 NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDG---YEDFIITNPEKIFSKAYDLII-N----GW-EIGGGSIRIH 498 (595)
Q Consensus 428 ~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~---~~~l~~~dp~~~~~~~fDl~~-~----G~-Ei~gGs~R~~ 498 (595)
.+++|||++.+....+ -.|.-.+.+| -.... .+ .-.+...||++ | +. ||.|+++| .
T Consensus 192 --e~gaVFii~IG~~L~~---------g~~HD~RaPDYDDW~t~~-~~--~~~gLNGDilvw~~vl~~a~ElSSMGIR-V 256 (330)
T 12as_A 192 --DLGAVFLVGIGGKLSD---------GHRHDVRAPDYDDWSTPS-EL--GHAGLNGDILVWNPVLEDAFELSSMGIR-V 256 (330)
T ss_dssp --HHSEEEEECCSSCCSS---------SCCSSCCCTTTBCCSSBC-TT--SSBCSEEEEEEEETTTTEEEEEEEEEEB-C
T ss_pred --hhCCEEEEecCCccCC---------CCcCcCcCCCCCCccccc-cc--cccCccceEEEeccccCceeEEecceEE-e
Confidence 3568899998753211 1222222111 11111 11 13458999988 5 44 99999999 9
Q ss_pred CHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCC-CCCccceeccHHHHHHHHcCCCCcccccc
Q psy3762 499 DAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYG-APPHGGIAFGLDRLITIMTGSKSIRDVIA 560 (595)
Q Consensus 499 d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G-~PPh~G~glGlDRLvm~l~g~~~IRdvi~ 560 (595)
|++.+.+.++..|..+. .+-+|.+++..| +|++.|.|||.+||+|+|++..+|-+|.+
T Consensus 257 d~~~L~~QL~~~g~~er----~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 257 DADTLKHQLALTGDEDR----LELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp CHHHHHHHHHHHTCTTG----GGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSC
T ss_pred CHHHHHHHHHHcCCChh----hccHHHHHHHcCCCCccccccccHHHHHHHHhccchhheeec
Confidence 99999999999998665 355799999999 79999999999999999999999999876
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.74 E-value=1e-17 Score=171.77 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhhCCCeeccCceeecCC---CCC--Cc-ccc-ccccCCCCCeeeccC--ChHHHH-HHHHhhCC---C
Q psy3762 142 RYKVTMEVRKFLDSKKFIEIETPILSKST---PEG--AR-DYL-VPSRINPGEFFALPQ--SPQLFK-QLLMVANF---D 208 (595)
Q Consensus 142 rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~g--a~-~f~-~~~~~~~~~~~~L~~--Spql~~-q~ll~~g~---~ 208 (595)
...+.+.+|++|...||.||.||.|++.. ..| .. ++. ..+.. ++-+.|++ +|.+.. -+.....- -
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl--~e~~~LRp~l~p~l~~~~r~~~~~~~~Pl 150 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWL--DGKKCLRPMLAPNLYTLWRELERLWDKPI 150 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEE--ETTEEECSCSHHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeeccc--ccchhhhhcChHHHHHHHHHHHhCCCCCE
Confidence 46899999999999999999999998621 111 11 121 11111 12256774 465542 11111212 3
Q ss_pred ceEEEecceecCCCCCCCCccccccccccccC
Q psy3762 209 RYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240 (595)
Q Consensus 209 rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~ 240 (595)
|+|++|+|||+|..+..|.+||+|+|+++.+.
T Consensus 151 rlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~ 182 (288)
T 3dsq_A 151 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGT 182 (288)
T ss_dssp EEEEEEEEECSCCSSSCCCSEEEEEEEEEETC
T ss_pred EEEEEeeEEecCCCCCCcCccEEEEEEEEEcC
Confidence 89999999999999999999999999998654
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.72 E-value=4.6e-17 Score=170.58 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecC--------CC--CCCccccccccCC---------------CCCeeeccCChHH
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKS--------TP--EGARDYLVPSRIN---------------PGEFFALPQSPQL 197 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~--------~~--~ga~~f~~~~~~~---------------~~~~~~L~~Spql 197 (595)
+.+.+.||++|..+||.||.+|.+.+. .+ ..|++...+++.. ....++.++||.+
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~l 183 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ 183 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHH
Confidence 678899999999999999999999761 11 1233322222211 2234577788887
Q ss_pred HHHHHHhhC--CCceEEEecceecCCCCCCCCccccccccccccC--CHHHHHHHHHHHHHHHH
Q psy3762 198 FKQLLMVAN--FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 198 ~~q~ll~~g--~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~~l~ 257 (595)
. ++|+.+ ..|+|+||+|||+|+.+++|+|||+|+|+++++. ++.|++..++.+++.++
T Consensus 184 l--r~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lf 245 (350)
T 1b7y_A 184 V--RYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALF 245 (350)
T ss_dssp H--HHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHS
T ss_pred H--HHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhc
Confidence 6 333443 3589999999999988888888999999999886 67888888887776653
No 22
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.58 E-value=1.1e-15 Score=158.35 Aligned_cols=112 Identities=14% Similarity=0.221 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCC--------CCC--CccccccccCCCCCeeeccCChHHHHHHHHhhCC--Cce
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKST--------PEG--ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANF--DRY 210 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~--------~~g--a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~--~rv 210 (595)
+.+.+.||++|...||.|+.+|.+.+.. +.+ +++...+++......++.++||.+..- |..+. -|+
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~lr~--l~~~~~piri 187 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRT--MKAQQPPIRI 187 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHHHH--HTTCCSSCCB
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHHHH--HHhCCCCeeE
Confidence 6788999999999999999999986521 111 333333333333445677788887333 34333 499
Q ss_pred EEEecceecCCCCCCCCcccccccccccc--CCHHHHHHHHHHHHHHHH
Q psy3762 211 YQITKCFRDEDLRSDRQPEFTQIDCETSF--MNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 211 f~i~~~FR~E~~~~~r~~EFt~lE~e~~~--~~~~dl~~~~E~ll~~l~ 257 (595)
|++|+|||.+ .+.+|.|+|+|+|+.+.+ +++.++...++.+++.++
T Consensus 188 feiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lf 235 (327)
T 3pco_A 188 IAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFF 235 (327)
T ss_dssp CCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EeeccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 9999999998 688999999999987764 357888888887777664
No 23
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.57 E-value=9e-15 Score=150.47 Aligned_cols=113 Identities=13% Similarity=0.155 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCC--------CC--CCccccccccCCCCCeeeccCChHHHHHHHHhhC----CC
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKST--------PE--GARDYLVPSRINPGEFFALPQSPQLFKQLLMVAN----FD 208 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~--------~~--ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g----~~ 208 (595)
+.+.+.+|++|...||.||++|.+.+.. +. .|++...+++.. +...|++|.--.+..+++.+ ..
T Consensus 56 ~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~--e~~vLRtsl~p~ll~~l~~N~~~~~~ 133 (294)
T 2rhq_A 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT--DEILMRTHTSPVQARTMEKRNGQGPV 133 (294)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS--SSEEECSSSHHHHHHHHHHTTTCSCE
T ss_pred HHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc--CcceeeccCHHHHHHHHHhcCCCCCc
Confidence 6788999999999999999999887621 11 011111111111 33456666666666667777 67
Q ss_pred ceEEEecceecCCCCCCCCcccccccccccc--CCHHHHHHHHHHHHHHHH
Q psy3762 209 RYYQITKCFRDEDLRSDRQPEFTQIDCETSF--MNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 209 rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~--~~~~dl~~~~E~ll~~l~ 257 (595)
|+|+||+|||+|+.+++|.|||+||++++++ +++.+++..+|.+++.++
T Consensus 134 riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 134 KIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLF 184 (294)
T ss_dssp EEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999987777777899999999998 567888888888777664
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=141.89 Aligned_cols=111 Identities=20% Similarity=0.283 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhhCCCeeccC-ceeec--------CCC--CCCccccccccCCC--------------------------
Q psy3762 143 YKVTMEVRKFLDSKKFIEIET-PILSK--------STP--EGARDYLVPSRINP-------------------------- 185 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~T-PiL~~--------~~~--~ga~~f~~~~~~~~-------------------------- 185 (595)
+.+.+.||++|...||.||.| |.+.. +.+ +.|++..++++...
T Consensus 228 ~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~~~s 307 (508)
T 3l4g_A 228 LKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGS 307 (508)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTTB
T ss_pred HHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccccCC
Confidence 688899999999999999875 76665 222 34665544443321
Q ss_pred -------------CCeeeccCChHHHHHHHH-hh----CCCceEEEecceecCCCCCCCCccccccccccccC--CHHHH
Q psy3762 186 -------------GEFFALPQSPQLFKQLLM-VA----NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM--NEEEI 245 (595)
Q Consensus 186 -------------~~~~~L~~Spql~~q~ll-~~----g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~--~~~dl 245 (595)
...++-++||.+..-+.- .. ..-|+|+||+|||+|..+.+|.|+|+|+|+.++.. ++.++
T Consensus 308 ~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~f~dL 387 (508)
T 3l4g_A 308 QGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHL 387 (508)
T ss_dssp CCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCCHHHH
T ss_pred ccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCCHHHH
Confidence 112344556655433321 11 23589999999999999999999999999987643 45666
Q ss_pred HHHHHHHH
Q psy3762 246 RNLFEEMI 253 (595)
Q Consensus 246 ~~~~E~ll 253 (595)
+.+++.++
T Consensus 388 Kg~Le~~l 395 (508)
T 3l4g_A 388 MGVLREFF 395 (508)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 25
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=99.12 E-value=1.6e-10 Score=123.77 Aligned_cols=95 Identities=16% Similarity=0.275 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhhC--------CCeeccC-ceeec--------CCC--CCCccccccccCCCCCeeeccCChHHHHHHHH
Q psy3762 143 YKVTMEVRKFLDSK--------KFIEIET-PILSK--------STP--EGARDYLVPSRINPGEFFALPQSPQLFKQLLM 203 (595)
Q Consensus 143 s~i~~~iR~ff~~~--------gF~EV~T-PiL~~--------~~~--~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll 203 (595)
+.+.+.||++|... ||.|+++ |.+.+ +.+ +.|++...+++......+..++||.+..-+
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~l-- 128 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLL-- 128 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHHH--
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHHH--
Confidence 56777788888776 9999999 66655 122 235555555555445556667888776544
Q ss_pred hhCCCceEEEecceecCCCCCCCCcccccccccccc
Q psy3762 204 VANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSF 239 (595)
Q Consensus 204 ~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~ 239 (595)
..+..|+|++|.|||.+..++.|.++|+|+|--..|
T Consensus 129 ~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 129 HAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp HTTCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEEE
T ss_pred HHCCCCEEEeeeEEeccchhhhhhHHhcCCCcEEEE
Confidence 566779999999999999999999999999976554
No 26
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.97 E-value=1.7e-08 Score=105.87 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC-------CCC---CccccccccCCCCCeeeccCChHHHHHHHHhhC-
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST-------PEG---ARDYLVPSRINPGEFFALPQSPQLFKQLLMVAN- 206 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-------~~g---a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g- 206 (595)
-.+++..|.+.+|+.|.+.||.||.||++.... ..+ ..++. .+.+..|+.+.|+.-.....-++.+..
T Consensus 35 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my-~~~D~~g~~l~LRpd~T~~~aR~~~~~~ 113 (344)
T 1z7m_A 35 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMF-QFIKHEGQSITLRYDFTLPLVRLYSQIK 113 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCC-EEECTTCCEEEECCCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEE-EEECCCCCEEecCCCCcHHHHHHHHhcC
Confidence 366788999999999999999999999998731 111 11211 112345677888866666666654432
Q ss_pred ---CCceEEEecceecCCCCCCCCccccccccccccCCH
Q psy3762 207 ---FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE 242 (595)
Q Consensus 207 ---~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~ 242 (595)
.-|.|+||+|||+|..+..|..||+|+++|..+.+.
T Consensus 114 ~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 114 DSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESA 152 (344)
T ss_dssp SCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCH
T ss_pred CCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCC
Confidence 359999999999998888888899999999987764
No 27
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.75 E-value=1.5e-08 Score=110.79 Aligned_cols=47 Identities=19% Similarity=0.383 Sum_probs=36.2
Q ss_pred CceEEEecceecCCC-CCCCCccccccccccccC--CHHHHHHHHHHHHH
Q psy3762 208 DRYYQITKCFRDEDL-RSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIR 254 (595)
Q Consensus 208 ~rvf~i~~~FR~E~~-~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~ 254 (595)
-|+|++|+|||.|.. +.+|.+||+|++..+.+. ++.|++..++.+++
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~ 255 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLR 255 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHG
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 389999999998776 677778999999998874 45666666655444
No 28
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=3.4e-08 Score=107.89 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=42.8
Q ss_pred ccCChHHHHHHHHh--h--CCCceEEEecceecCCC-CCCCCccccccccccccC--CHHHHHHHHHHHHH
Q psy3762 191 LPQSPQLFKQLLMV--A--NFDRYYQITKCFRDEDL-RSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIR 254 (595)
Q Consensus 191 L~~Spql~~q~ll~--~--g~~rvf~i~~~FR~E~~-~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~ 254 (595)
.+.+|.+..+.-.. . ..-|+|++|+|||.+.. +++|.+||+|++.-+++. ++.|+...+|.+++
T Consensus 197 TsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~ 267 (549)
T 2du7_A 197 SHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLA 267 (549)
T ss_dssp STTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHG
T ss_pred cccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 34666665554322 1 12489999999998765 666667999999998774 35566655555444
No 29
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.68 E-value=5.4e-08 Score=107.08 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=46.5
Q ss_pred eeccCChHHHHHHHHh----hCCCceEEEecceecCCC-CCCCCccccccccccccC--CHHHHHHHHHHHHHHH
Q psy3762 189 FALPQSPQLFKQLLMV----ANFDRYYQITKCFRDEDL-RSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIRVI 256 (595)
Q Consensus 189 ~~L~~Spql~~q~ll~----~g~~rvf~i~~~FR~E~~-~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~~l 256 (595)
++.+.+|.+..+.-.. ...-|+|++|+|||.+.. +.+|.+||+|++.-+++. ++.|+...+|.+++.+
T Consensus 202 LRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 202 LRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp ECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred ccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3445677665555322 123489999999998765 677778999999988774 4566666666554433
No 30
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.68 E-value=5.7e-08 Score=106.97 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=46.5
Q ss_pred eeccCChHHHHHHHHh----hCCCceEEEecceecCCC-CCCCCccccccccccccC--CHHHHHHHHHHHHHHH
Q psy3762 189 FALPQSPQLFKQLLMV----ANFDRYYQITKCFRDEDL-RSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIRVI 256 (595)
Q Consensus 189 ~~L~~Spql~~q~ll~----~g~~rvf~i~~~FR~E~~-~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~~l 256 (595)
++.+.+|.+..+.-.. ...-|+|++|+|||.+.. +.+|.+||+|++.-+++. ++.|+...+|.+++.+
T Consensus 202 LRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 202 LRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp ECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred ccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3445677665555322 123489999999998765 677778999999988774 4566666666654433
No 31
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.68 E-value=6.5e-08 Score=106.67 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=46.5
Q ss_pred eeccCChHHHHHHHHh----hCCCceEEEecceecCCC-CCCCCccccccccccccC--CHHHHHHHHHHHHHHH
Q psy3762 189 FALPQSPQLFKQLLMV----ANFDRYYQITKCFRDEDL-RSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIRVI 256 (595)
Q Consensus 189 ~~L~~Spql~~q~ll~----~g~~rvf~i~~~FR~E~~-~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~~l 256 (595)
++.+.+|.+..+.-.. ...-|+|++|+|||.+.. +.+|.+||+|++.-+++. ++.|+...+|.+++.+
T Consensus 202 LRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 202 LRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp ECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred ccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3445677665555322 123489999999998765 677778999999988774 4566666666654433
No 32
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.64 E-value=7.3e-08 Score=106.49 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=45.9
Q ss_pred eccCChHHHHHHHHh----hCCCceEEEecceecCCC-CCCCCccccccccccccC--CHHHHHHHHHHHHHHH
Q psy3762 190 ALPQSPQLFKQLLMV----ANFDRYYQITKCFRDEDL-RSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIRVI 256 (595)
Q Consensus 190 ~L~~Spql~~q~ll~----~g~~rvf~i~~~FR~E~~-~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~~l 256 (595)
+.+.+|.+..+.-.. ...-|+|++|+|||.+.. +.+|.+||+|++.-+++. ++.|+...+|.+++.+
T Consensus 203 RTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 203 RSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp CCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 445677665555322 123489999999998765 677778999999988774 4566666666655433
No 33
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=98.38 E-value=1.5e-06 Score=92.09 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCC---C-ccccccccCCCCCeeeccCChHHHHHHHHhh------
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEG---A-RDYLVPSRINPGEFFALPQSPQLFKQLLMVA------ 205 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~g---a-~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~------ 205 (595)
.+++..|.+.+|+.|.++||.||.||++.... ..| . .++. .+.+..|+.+.|+.-.....-++++.
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my-~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 115 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWI-RLFDGGGDAVALRPEMTPSIARMAAPRVAAGR 115 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCC-BCCCCSSSCEEECSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceE-EEECCCCCEEEECCcCHHHHHHHHHhccccCC
Confidence 66788999999999999999999999998631 111 1 1211 12233567778875554444443332
Q ss_pred CCCceEEEecceecCCC------CCCCCccccccccccccCC-H----HHHHHHHHHHHHH
Q psy3762 206 NFDRYYQITKCFRDEDL------RSDRQPEFTQIDCETSFMN-E----EEIRNLFEEMIRV 255 (595)
Q Consensus 206 g~~rvf~i~~~FR~E~~------~~~r~~EFt~lE~e~~~~~-~----~dl~~~~E~ll~~ 255 (595)
..-|.|++|+|||+|.. ...|..||+|+++|..+.+ . .+++.++.++++.
T Consensus 116 ~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~ 176 (373)
T 3rac_A 116 TPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAA 176 (373)
T ss_dssp CCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 34699999999999987 6677669999999987766 2 3455555444443
No 34
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.36 E-value=1.5e-06 Score=93.86 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---C-CCC---ccccccccCCCCCeeeccCChHHHHHHHHhhC----
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---P-EGA---RDYLVPSRINPGEFFALPQSPQLFKQLLMVAN---- 206 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~-~ga---~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g---- 206 (595)
-.+++..|.+.+|+.|.+.||.||.||++.+.. . .|. .++. .+.+..|+.+.|+.-.....-+..+..
T Consensus 19 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~-~~~D~~g~~l~LrPd~t~~~aR~~~~~~~~~ 97 (434)
T 1wu7_A 19 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTY-SFVDKGGREVTLIPEATPSTVRMVTSRKDLQ 97 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSC-EEECTTSCEEEECSCSHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceE-EEECCCCCEEEeCCCChHHHHHHHHhcCCCC
Confidence 467889999999999999999999999998842 1 121 1111 112345677888876666666655532
Q ss_pred -CCceEEEecceecCCCCCCCCccccccccccccCCH
Q psy3762 207 -FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE 242 (595)
Q Consensus 207 -~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~ 242 (595)
.-|.|+||+|||+|..+..|.-||+|+++|..+.+.
T Consensus 98 lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~ 134 (434)
T 1wu7_A 98 RPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDS 134 (434)
T ss_dssp SSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCS
T ss_pred CCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCC
Confidence 359999999999998888888899999999987764
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.35 E-value=1.2e-06 Score=93.64 Aligned_cols=116 Identities=14% Similarity=0.114 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC---CC---CccccccccCCCCCeeeccCChHHHHHHHHhhC-----
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP---EG---ARDYLVPSRINPGEFFALPQSPQLFKQLLMVAN----- 206 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~g---a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g----- 206 (595)
-.+++..|.+.+|+.|.++||.||.||++....- .| ..++ ..+.+..|+.+.|+.-.....-+.++..
T Consensus 23 ~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~m-y~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 101 (400)
T 3od1_A 23 WYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQL-FKLLDQQGNTLVLRPDMTAPIARLVASSLKDRA 101 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGS-CEEECTTSCEEEECSCSHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccce-EEEECCCCCEEEECCCCHHHHHHHHHhhcccCC
Confidence 4677899999999999999999999999976421 01 1111 1112335677888866555555544432
Q ss_pred -CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHH
Q psy3762 207 -FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIR 254 (595)
Q Consensus 207 -~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~ 254 (595)
.-|.|++|+|||.|.....|..||+|+++|..+.+. .+++.++.++++
T Consensus 102 ~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~ 154 (400)
T 3od1_A 102 YPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALK 154 (400)
T ss_dssp SCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHH
Confidence 348999999999999888888899999999977653 344444444433
No 36
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.32 E-value=9e-07 Score=95.25 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC---CCC-ccccccccCCCCCeeeccCChHHHHHHHHhh-------
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP---EGA-RDYLVPSRINPGEFFALPQSPQLFKQLLMVA------- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~ga-~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~------- 205 (595)
.-.+++..|.+.+++.|.+.||.||.||+|..... .|. ..|....+...+..++|....+...-.+.+.
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~ 249 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEEN 249 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhcccccc
Confidence 45778899999999999999999999999987421 111 1121111111244567765555444333221
Q ss_pred CCCceEEEecceecCCCCCC-------CCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 206 NFDRYYQITKCFRDEDLRSD-------RQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 206 g~~rvf~i~~~FR~E~~~~~-------r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
-.-|+|++|+|||+|....+ |..||+|+|++. |.+.++..+..++++...
T Consensus 250 LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~ 306 (425)
T 2dq3_A 250 LPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDA 306 (425)
T ss_dssp CCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred CCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHH
Confidence 14599999999999986522 778999999976 555555555555555444
No 37
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=98.32 E-value=7.2e-07 Score=96.95 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeccCceeecCCC----CCCc---cccccccCCCCCeeeccCChHHHHHHHHhhC-----
Q psy3762 139 LRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP----EGAR---DYLVPSRINPGEFFALPQSPQLFKQLLMVAN----- 206 (595)
Q Consensus 139 l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----~ga~---~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g----- 206 (595)
.+++..|.+.+|+.|.++||.||.||++....- .|.. ++. .+.+..|+.+.|+.-.....-++++..
T Consensus 43 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my-~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 121 (456)
T 3lc0_A 43 MRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMF-NFITKGGHRVALRPEMTPSLARLLLGKGRSLL 121 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCE-EEECSSSCEEEECSCSHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceE-EEEcCCCCEEecCCcCHHHHHHHHHhcCcccC
Confidence 577899999999999999999999999987431 1211 110 112345677888876666665655543
Q ss_pred -CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHH
Q psy3762 207 -FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRV 255 (595)
Q Consensus 207 -~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~ 255 (595)
.-|.|++|+|||+|.....|..||+|+++|..+.+. .+++.++.++++.
T Consensus 122 ~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~ 175 (456)
T 3lc0_A 122 LPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRS 175 (456)
T ss_dssp SSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 358999999999999888888899999999877652 3444444444433
No 38
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.31 E-value=7e-07 Score=95.47 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCCc-cccc-cc-cCCCCCeeeccCChHHHHHHHHhhC-----
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGAR-DYLV-PS-RINPGEFFALPQSPQLFKQLLMVAN----- 206 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga~-~f~~-~~-~~~~~~~~~L~~Spql~~q~ll~~g----- 206 (595)
-.+++..|.+.+|+.|.+.||.||.||+|.... ..|.- .|.. .+ .+..++.++|+...+...-++.+..
T Consensus 29 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 108 (401)
T 1evl_A 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYR 108 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhh
Confidence 477889999999999999999999999998742 01210 0110 01 1224567889877776665544422
Q ss_pred --CCceEEEecceecCCC--CCC--CCccccccccccccCCHHHHHHHHHHHHH
Q psy3762 207 --FDRYYQITKCFRDEDL--RSD--RQPEFTQIDCETSFMNEEEIRNLFEEMIR 254 (595)
Q Consensus 207 --~~rvf~i~~~FR~E~~--~~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~ 254 (595)
.-|+|+||+|||+|.. ... |..||+|.|+|. |.+.++.....++++.
T Consensus 109 ~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~e~i~ 161 (401)
T 1evl_A 109 DLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIR 161 (401)
T ss_dssp GCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hCChhhccccceecCCCCcccccccccCcEEecceEE-eCCHHHHHHHHHHHHH
Confidence 2489999999999986 445 888999999995 6666555554444443
No 39
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.29 E-value=5.4e-07 Score=96.75 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----C-CCCcc-ccc-ccc--CCCCCeeeccCChHHHHHHHHhh---
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----P-EGARD-YLV-PSR--INPGEFFALPQSPQLFKQLLMVA--- 205 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~-~ga~~-f~~-~~~--~~~~~~~~L~~Spql~~q~ll~~--- 205 (595)
-.+++..|.+.+|+.|.+.||.||.||+|.... . +|..+ +.. .+. +..|+.++|+.-.....-++++.
T Consensus 15 ~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~~ 94 (420)
T 1qe0_A 15 DSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKM 94 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhccc
Confidence 467889999999999999999999999998732 1 12111 110 011 11345677876555554444331
Q ss_pred -----CCCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHH
Q psy3762 206 -----NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIR 254 (595)
Q Consensus 206 -----g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~ 254 (595)
..-|+|++|+|||+|..+..|..||+|+|+|..+.+. .+++.++.++++
T Consensus 95 ~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~ 152 (420)
T 1qe0_A 95 QGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQ 152 (420)
T ss_dssp GGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHH
Confidence 2359999999999998888887899999999877763 344444444433
No 40
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.28 E-value=9e-07 Score=96.33 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC---CC-----CccccccccCCCCCeeeccCCh-HH--HHHHHH
Q psy3762 135 MQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP---EG-----ARDYLVPSRINPGEFFALPQSP-QL--FKQLLM 203 (595)
Q Consensus 135 ~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~g-----a~~f~~~~~~~~~~~~~L~~Sp-ql--~~q~ll 203 (595)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.+..- .| ..++. .+....++.++|+... +. .+-+..
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~-~~~d~~~~~~~LrPt~ee~t~~i~r~~ 141 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEML-RIADRHKRELLYGPTNEEMITEIFRAY 141 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSE-EEECTTCCEEEECSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceE-EEEeCCCCeEEECCCChHHHHHHHHHH
Confidence 3346888999999999999999999999999987420 12 11111 1112345677887642 22 222211
Q ss_pred hh----CCCceEEEecceecC-CCCCC--CCccccccccccccCCHHHHHHHHHHH
Q psy3762 204 VA----NFDRYYQITKCFRDE-DLRSD--RQPEFTQIDCETSFMNEEEIRNLFEEM 252 (595)
Q Consensus 204 ~~----g~~rvf~i~~~FR~E-~~~~~--r~~EFt~lE~e~~~~~~~dl~~~~E~l 252 (595)
+. -.-|+||||+|||+| ..... |..||+|+|+|..+.+..+.-..+..+
T Consensus 142 ~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 142 IKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp CCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 21 235999999999999 55555 888999999999777766554444443
No 41
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.26 E-value=2.9e-06 Score=91.12 Aligned_cols=104 Identities=20% Similarity=0.293 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CC-CC------ccccccccCCCCCeeeccCChHHHHHHHHhh--
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PE-GA------RDYLVPSRINPGEFFALPQSPQLFKQLLMVA-- 205 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~-ga------~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~-- 205 (595)
-.+++..|.+.+|+.|.+.||.||.||++.+.. .. |. .++. .+.+..|+.+.|+.-.....-+..+.
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~-~~~D~~g~~l~Lrpd~t~~~ar~~~~~~ 94 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMF-TFQDRGGRSLTLRPEGTAAMVRAYLEHG 94 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceE-EEECCCCCEEeeCCcchHHHHHHHHhcc
Confidence 367789999999999999999999999998732 11 21 1111 11233567788876555554444332
Q ss_pred -----CCCceEEEecceecCCCCCCCCccccccccccccCCH
Q psy3762 206 -----NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE 242 (595)
Q Consensus 206 -----g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~ 242 (595)
..-|.|+||++||+|..+..|..||+|+++|.-+.+.
T Consensus 95 ~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~ 136 (421)
T 1h4v_B 95 MKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSEN 136 (421)
T ss_pred ccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCC
Confidence 1359999999999998888888899999999877664
No 42
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=98.25 E-value=1.7e-06 Score=94.36 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----CCCC-cc-cc-c--cccCCC-CCeeeccCChHHHHHHHHhhC-
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----PEGA-RD-YL-V--PSRINP-GEFFALPQSPQLFKQLLMVAN- 206 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~~ga-~~-f~-~--~~~~~~-~~~~~L~~Spql~~q~ll~~g- 206 (595)
-.+++..|.+.+|+.|.++||.||.||+|.... .-|. .+ +. . .+.+.. |+.+.|+.-.....-++++..
T Consensus 45 ~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~ 124 (467)
T 4e51_A 45 DAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHN 124 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcc
Confidence 467889999999999999999999999998732 1121 11 10 1 111234 778889866665555554432
Q ss_pred -----CCceEEEecceecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHH
Q psy3762 207 -----FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRV 255 (595)
Q Consensus 207 -----~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~ 255 (595)
.-|.|++|+|||+|.....|..||+|+++|..+.+. .+++.++.++++.
T Consensus 125 ~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~ 182 (467)
T 4e51_A 125 MLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWED 182 (467)
T ss_dssp TTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHH
Confidence 358999999999999888888899999999876653 3455444444443
No 43
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=98.22 E-value=2.8e-06 Score=91.34 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CC-CC------ccccccccCCCCCeeeccCChHHHHHHHHh-hC
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PE-GA------RDYLVPSRINPGEFFALPQSPQLFKQLLMV-AN 206 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~-ga------~~f~~~~~~~~~~~~~L~~Spql~~q~ll~-~g 206 (595)
-.+++..|.+.+|+.|.+.||.||.||++.+.. .. |. .++. .+.+..|+.+.|+.-.....-+..+ ..
T Consensus 17 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~-~~~D~~g~~l~Lrpd~t~~~aR~~~~~~ 95 (423)
T 1htt_A 17 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMY-TFEDRNGDSLTLRPEGTAGCVRAGIEHG 95 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCE-EEECTTSCEEEECSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheE-EEEcCCCCEEEeCCCchHHHHHHHHhcc
Confidence 367889999999999999999999999998732 01 21 1111 1123456778888665555555444 22
Q ss_pred -----CCceEEEecceecCCCCCCCCccccccccccccCCH
Q psy3762 207 -----FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE 242 (595)
Q Consensus 207 -----~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~ 242 (595)
.-|.|+||+|||+|..+..|..||+|+++|..+.+.
T Consensus 96 ~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~ 136 (423)
T 1htt_A 96 LLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQG 136 (423)
T ss_dssp CSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCS
T ss_pred cccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCC
Confidence 359999999999998888888899999999977764
No 44
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=98.19 E-value=6.3e-06 Score=89.54 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecC----CCCC--CccccccccCCCCCeeeccCChHHHHHHHHhhC---C
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKS----TPEG--ARDYLVPSRINPGEFFALPQSPQLFKQLLMVAN---F 207 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~----~~~g--a~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g---~ 207 (595)
.-.+++..|.+.+|+.|.++||.||.||++... ..-| ...+ ..+.+..|+.+.|+.-.....-+.++.. .
T Consensus 26 ~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~-y~f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p 104 (464)
T 4g84_A 26 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLI-YDLKDQGGELLSLRYDLTVPFARYLAMNKLTN 104 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CC-CBBCCCSSCCEEECSCSHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCccee-EEEECCCCCEEEeCCcCcHHHHHHHHhcCCCC
Confidence 346788999999999999999999999999763 1112 1121 1223345777888865444444544432 3
Q ss_pred CceEEEecceecCCCCC--CCCccccccccccccC-C--H--HHHHHHHHHHHHH
Q psy3762 208 DRYYQITKCFRDEDLRS--DRQPEFTQIDCETSFM-N--E--EEIRNLFEEMIRV 255 (595)
Q Consensus 208 ~rvf~i~~~FR~E~~~~--~r~~EFt~lE~e~~~~-~--~--~dl~~~~E~ll~~ 255 (595)
-|.|+||++||.|..+. .|.-||+|+++|..+. + . .+++.++-++++.
T Consensus 105 ~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 159 (464)
T 4g84_A 105 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 159 (464)
T ss_dssp EEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHH
T ss_pred ceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHH
Confidence 48999999999997643 4556999999998764 2 1 3455555444443
No 45
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=98.19 E-value=5.2e-06 Score=91.68 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeecC----C--CCCCccccccccCCCCCeeeccCChHHHHHHHHhhC---
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKS----T--PEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVAN--- 206 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~----~--~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g--- 206 (595)
-.-.++|..|.+.+|+.|.++||.||.||++... . .+....+ ..+.+..|+.+.|+.-.....-+.++..
T Consensus 78 P~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~m-y~f~D~~g~~l~LRPd~T~~~aR~~~~~~~~ 156 (517)
T 4g85_A 78 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLI-YDLKDQGGELLSLRYDLTVPFARYLAMNKLT 156 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CS-CBBCCTTSCCEEECSCSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCccee-EEEECCCCCEEEeCCcCcHHHHHHHHhCCCC
Confidence 3457888999999999999999999999999762 1 1111111 1223346777888865554455544432
Q ss_pred CCceEEEecceecCCCCC--CCCccccccccccccC-C--H--HHHHHHHHHHHHH
Q psy3762 207 FDRYYQITKCFRDEDLRS--DRQPEFTQIDCETSFM-N--E--EEIRNLFEEMIRV 255 (595)
Q Consensus 207 ~~rvf~i~~~FR~E~~~~--~r~~EFt~lE~e~~~~-~--~--~dl~~~~E~ll~~ 255 (595)
.-|.|+||+|||.|.... .|.-||+|+++|..+. + . .+++.++-++++.
T Consensus 157 p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 212 (517)
T 4g85_A 157 NIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 212 (517)
T ss_dssp CEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHH
T ss_pred CceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHh
Confidence 348999999999997643 5666999999998764 2 1 3455555444443
No 46
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.16 E-value=3e-06 Score=92.36 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecC----C-CCCCcc-ccccccCC---------------CCCeeeccCChH
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKS----T-PEGARD-YLVPSRIN---------------PGEFFALPQSPQ 196 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~----~-~~ga~~-f~~~~~~~---------------~~~~~~L~~Spq 196 (595)
-.+++..|.+.+|+.|..+||.||.||++... . .+...+ +. .+.+. .|..+.|+.-..
T Consensus 25 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~-~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T 103 (465)
T 3net_A 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIY-GLEPILPPNRQAEKDKSGDTGSEARALKFDQT 103 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEE-EEEEEC----------------CCEEECSCSH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceE-EEecccccccccccccccCCCCCEEEeCCCCh
Confidence 36778999999999999999999999999652 1 111122 11 11111 256788886666
Q ss_pred HHHHHHHhh------CCCceEEEecceecCCCCCCCCccccccccccccCCH--H----HHHHHHHHHHHHH
Q psy3762 197 LFKQLLMVA------NFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNE--E----EIRNLFEEMIRVI 256 (595)
Q Consensus 197 l~~q~ll~~------g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~--~----dl~~~~E~ll~~l 256 (595)
...-++++. ..-|.|++|+|||.|.....|..||+|+++|..+.+. . |++.++-++++.+
T Consensus 104 ~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l 175 (465)
T 3net_A 104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV 175 (465)
T ss_dssp HHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc
Confidence 655554442 2349999999999999888888899999999877652 2 4566655555544
No 47
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.14 E-value=5.1e-06 Score=90.73 Aligned_cols=120 Identities=11% Similarity=0.076 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC----CCC-cccccc-cc-CCC-----CCeeeccCChHH-----HHH
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP----EGA-RDYLVP-SR-INP-----GEFFALPQSPQL-----FKQ 200 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----~ga-~~f~~~-~~-~~~-----~~~~~L~~Spql-----~~q 200 (595)
-.+++..|.+.+|+.|.+.||.||.||+|.+..- .|. ..|... +. +.. ++.++|+...+. |.+
T Consensus 43 g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~ 122 (477)
T 1hc7_A 43 GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHh
Confidence 4778899999999999999999999999987531 121 011110 10 111 456788766553 333
Q ss_pred HHHh--hCCCceEEEecceecCCCCCC--CCccccccccccccCCHHHHHHHHHHH---HHHHH
Q psy3762 201 LLMV--ANFDRYYQITKCFRDEDLRSD--RQPEFTQIDCETSFMNEEEIRNLFEEM---IRVIF 257 (595)
Q Consensus 201 ~ll~--~g~~rvf~i~~~FR~E~~~~~--r~~EFt~lE~e~~~~~~~dl~~~~E~l---l~~l~ 257 (595)
.+.. .-.-|+||||+|||+|..-.. |..||+|.|++..+++.++....+..+ ...++
T Consensus 123 ~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~ 186 (477)
T 1hc7_A 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLA 186 (477)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 3111 123599999999999965446 888999999999999887766666555 44555
No 48
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.09 E-value=8.2e-06 Score=88.68 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHh-hhCCCeeccCceeecCC---CCCC-cccccc-ccC-C---CCCeeeccCChHHHHHHHHhhC
Q psy3762 137 KNLRLRYKVTMEVRKFL-DSKKFIEIETPILSKST---PEGA-RDYLVP-SRI-N---PGEFFALPQSPQLFKQLLMVAN 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~---~~ga-~~f~~~-~~~-~---~~~~~~L~~Spql~~q~ll~~g 206 (595)
.-.+++..|.+.+|+.+ .+.||.||.||+|.... ..|. ..|... +.. . .++.++|+...+...-.+....
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~ 141 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKK 141 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhc
Confidence 45788999999999999 99999999999998732 0121 112111 110 1 2456888766655544443332
Q ss_pred -------CCceEEEecceecCCCC--CC--CCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 207 -------FDRYYQITKCFRDEDLR--SD--RQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 207 -------~~rvf~i~~~FR~E~~~--~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
.-|+|++|+|||+|... .. |..||+|.|.+. |++.++..+.+++++..+.
T Consensus 142 ~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~ 202 (460)
T 3uh0_A 142 DRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLID 202 (460)
T ss_dssp CCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred cccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHHHHHH
Confidence 24899999999999885 45 888999999996 6666666666666555444
No 49
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.07 E-value=9e-06 Score=90.86 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-----ccccccccCCCCCeeeccCChHHHHHHHHhh---
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-----RDYLVPSRINPGEFFALPQSPQLFKQLLMVA--- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-----~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~--- 205 (595)
.-.+++..|.+.+|+.|.+.||.||.||+|.... ..|. .++. .+....++.++|+...+...-++.+.
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~-~~~d~~~~~~~LrP~~~~~~~~~~~~~~~ 123 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLY-RLKDRNDRDYILGPTHEETFTELIRDEIN 123 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSC-EEECTTCCEEEECSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheE-EEecCCCCeEEEccccHHHHHHHHHhhcc
Confidence 4578899999999999999999999999998742 0121 1111 11123456788875554433332222
Q ss_pred ----CCCceEEEecceecCCCC-CC--CCccccccccccccCCHHHHHHHHHHH
Q psy3762 206 ----NFDRYYQITKCFRDEDLR-SD--RQPEFTQIDCETSFMNEEEIRNLFEEM 252 (595)
Q Consensus 206 ----g~~rvf~i~~~FR~E~~~-~~--r~~EFt~lE~e~~~~~~~dl~~~~E~l 252 (595)
-.-|+|++|+|||+|... .. |..||+|.|+|..+.+..+....++.+
T Consensus 124 s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 124 SYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDY 177 (572)
T ss_dssp BGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHH
Confidence 234999999999999874 33 778999999999777666655555543
No 50
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=98.05 E-value=6e-06 Score=89.43 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-ccccccccCCCCCeeeccCChHHHHHHHHhh-------
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-RDYLVPSRINPGEFFALPQSPQLFKQLLMVA------- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~------- 205 (595)
.-.+++..|.+.+++.+.+.||.||.||+|.... ..|. ..|....+...+..++|....+...-.+...
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~LrPt~e~~~~~~~~~~~~s~~~ 270 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGKD 270 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTTSSCEECSSTHHHHHHTTTTEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecCCcEEEcCcCcHHHHHHHHhCccCchh
Confidence 4577889999999999999999999999998732 1131 1132111111234567876666655443331
Q ss_pred CCCceEEEecceecCCCCCC-------CCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 206 NFDRYYQITKCFRDEDLRSD-------RQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 206 g~~rvf~i~~~FR~E~~~~~-------r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
-.-|+|++|+|||+|....+ |..||+|.|++ .|++.++..+..++++...
T Consensus 271 LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~~ 327 (455)
T 2dq0_A 271 LPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRNA 327 (455)
T ss_dssp CSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHHH
T ss_pred CCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHHH
Confidence 13489999999999986443 77899999999 5666677777777666544
No 51
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.05 E-value=1.3e-05 Score=87.16 Aligned_cols=116 Identities=21% Similarity=0.180 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----CCCC-ccccc-ccc-CCC-----CCeeeccCChHHHHHHHHhh
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----PEGA-RDYLV-PSR-INP-----GEFFALPQSPQLFKQLLMVA 205 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~~ga-~~f~~-~~~-~~~-----~~~~~L~~Spql~~q~ll~~ 205 (595)
-.+++..|.+.+|+.|.+.||.||.||++.+.. ..|. ..|.. .+. +.. +..++|+...+...-++.+.
T Consensus 37 g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~ 116 (459)
T 1nj8_A 37 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 116 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHH
Confidence 477889999999999999999999999998732 1121 11110 011 112 45678886666555554342
Q ss_pred C-------CCceEEEecceecCCC-CCC--CCcccc-ccccccccCCHHHHHHHHHHHH
Q psy3762 206 N-------FDRYYQITKCFRDEDL-RSD--RQPEFT-QIDCETSFMNEEEIRNLFEEMI 253 (595)
Q Consensus 206 g-------~~rvf~i~~~FR~E~~-~~~--r~~EFt-~lE~e~~~~~~~dl~~~~E~ll 253 (595)
. .-|+||||+|||+|.. ... |..||+ |.|.+..+++.++.....++++
T Consensus 117 ~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i 175 (459)
T 1nj8_A 117 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAI 175 (459)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHH
Confidence 1 3499999999999987 445 778999 9999998998766655544333
No 52
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.04 E-value=5.6e-06 Score=93.82 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCCc-cccc-cc--cCCCC-CeeeccCChHHHHHHHHhhC-
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGAR-DYLV-PS--RINPG-EFFALPQSPQLFKQLLMVAN- 206 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga~-~f~~-~~--~~~~~-~~~~L~~Spql~~q~ll~~g- 206 (595)
-.-.+++..|.+.+|+.|.+.||.||.||+|.... ..|.- .|.. .+ ....+ +.++|+.......-++.+..
T Consensus 268 P~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~ 347 (645)
T 1nyr_A 268 PNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhh
Confidence 35688999999999999999999999999998742 01211 0111 11 11245 67888876665555544432
Q ss_pred ------CCceEEEecceecCCCCC--C--CCccccccccccccCCHHHHHHHHHHHHH
Q psy3762 207 ------FDRYYQITKCFRDEDLRS--D--RQPEFTQIDCETSFMNEEEIRNLFEEMIR 254 (595)
Q Consensus 207 ------~~rvf~i~~~FR~E~~~~--~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~ 254 (595)
.-|+|+||+|||+|.+++ . |..||||.|+|. |.+.+++.+...+++.
T Consensus 348 ~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~ 404 (645)
T 1nyr_A 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVN 404 (645)
T ss_dssp CBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHH
Confidence 248999999999999863 3 778999999997 6665555444444443
No 53
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=98.03 E-value=1.1e-05 Score=86.54 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-ccccccccCCCCCeeeccCChHHHHHHHHhhC-------
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-RDYLVPSRINPGEFFALPQSPQLFKQLLMVAN------- 206 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g------- 206 (595)
-.+++..|.+.+++.+.+.||.||.||+|.... ..|. ..|....+...+.-++|....+...-.++...
T Consensus 165 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~L~Pt~e~~~~~~~~~~~~s~~~L 244 (421)
T 1ses_A 165 LALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEAL 244 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHHHHTTTTCEEEGGGC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcCCeEEEeecCcHHHHHHhcccccCchhC
Confidence 477889999999999999999999999998731 0121 11221111112345678776666555543321
Q ss_pred CCceEEEecceecCCCC-----CC--CCccccccccccccCC-HHHHHHHHHHHHHHH
Q psy3762 207 FDRYYQITKCFRDEDLR-----SD--RQPEFTQIDCETSFMN-EEEIRNLFEEMIRVI 256 (595)
Q Consensus 207 ~~rvf~i~~~FR~E~~~-----~~--r~~EFt~lE~e~~~~~-~~dl~~~~E~ll~~l 256 (595)
.-|+|++|+|||+|-.+ .. |..||+|.|++..... .++..+..++++...
T Consensus 245 Plr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 245 PLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp SEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 34899999999999532 23 7789999999875444 366666666665544
No 54
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.95 E-value=1.3e-05 Score=87.45 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCCc-cccc-ccc-CCCCCeeeccCChHHHHHHHHh-------
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGAR-DYLV-PSR-INPGEFFALPQSPQLFKQLLMV------- 204 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga~-~f~~-~~~-~~~~~~~~L~~Spql~~q~ll~------- 204 (595)
-.+++..|.+.+|+.|.+.||.||.||+|.... ..|.. .|.. .+. +..++.++|+...+...-++.+
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r 127 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHR 127 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhcc
Confidence 377889999999999999999999999998742 11211 1111 011 2346678887555443322211
Q ss_pred ---hCCCceEEEecceecCCCC--CC--CCcccccccccccc
Q psy3762 205 ---ANFDRYYQITKCFRDEDLR--SD--RQPEFTQIDCETSF 239 (595)
Q Consensus 205 ---~g~~rvf~i~~~FR~E~~~--~~--r~~EFt~lE~e~~~ 239 (595)
.-.-|+|++|+|||+|... .. |..||+|.|+|...
T Consensus 128 ~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~ 169 (471)
T 3a32_A 128 SKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV 169 (471)
T ss_dssp GGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE
T ss_pred ccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc
Confidence 1246999999999999876 56 88899999999854
No 55
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.94 E-value=1e-05 Score=88.90 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---C-CCC-ccccc-ccc-CCC-----CCeeeccCChHHHHHHHHh
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---P-EGA-RDYLV-PSR-INP-----GEFFALPQSPQLFKQLLMV 204 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~-~ga-~~f~~-~~~-~~~-----~~~~~L~~Spql~~q~ll~ 204 (595)
.-.+++..|.+.+|+.|.+ ||.||.||+|.+.. . .|. ..|.. .+. +.. +..++|+...+...-.+.+
T Consensus 69 ~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~ 147 (501)
T 1nj1_A 69 HGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFA 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHH
Confidence 3477888999999999999 99999999998742 1 110 01111 011 111 3467887666555444433
Q ss_pred hC-------CCceEEEecceecCCC-CCC--CCcccc-ccccccccCCHHHHHHHHHHHHH
Q psy3762 205 AN-------FDRYYQITKCFRDEDL-RSD--RQPEFT-QIDCETSFMNEEEIRNLFEEMIR 254 (595)
Q Consensus 205 ~g-------~~rvf~i~~~FR~E~~-~~~--r~~EFt-~lE~e~~~~~~~dl~~~~E~ll~ 254 (595)
.. .-|+|++|+|||+|.. ... |..||+ |.|.+..+++.++....+++++.
T Consensus 148 ~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~ 208 (501)
T 1nj1_A 148 LWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVE 208 (501)
T ss_dssp HHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHH
Confidence 21 2489999999999987 445 788999 99999889988777666655544
No 56
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.90 E-value=9.8e-06 Score=91.71 Aligned_cols=117 Identities=19% Similarity=0.248 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CCCC-----ccccccccCCCCCeeeccCChHHHHHHHHhhC-
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PEGA-----RDYLVPSRINPGEFFALPQSPQLFKQLLMVAN- 206 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~ga-----~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g- 206 (595)
-.-.+++..|.+.+|+.+.+.||.||.||+|.... ..|. .++.. ....++.++|+...+...-++....
T Consensus 268 P~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~--~d~~~~~~~LrP~~~~~~~~~~~~~~ 345 (642)
T 1qf6_A 268 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGL 345 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE--EEETTEEEEECSSSHHHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee--eecCCceEEecCCCCHHHHHHHHhhh
Confidence 35678999999999999999999999999998742 0121 11111 1123566788766655444433322
Q ss_pred ------CCceEEEecceecCCC--CCC--CCccccccccccccCCHHHHHHHHHHHHHH
Q psy3762 207 ------FDRYYQITKCFRDEDL--RSD--RQPEFTQIDCETSFMNEEEIRNLFEEMIRV 255 (595)
Q Consensus 207 ------~~rvf~i~~~FR~E~~--~~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~ 255 (595)
.-|+|++|+|||+|.+ ... |-.||+|.|.+. |.+.+++...+++++..
T Consensus 346 ~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~ 403 (642)
T 1qf6_A 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRL 403 (642)
T ss_dssp EEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred hhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHH
Confidence 2489999999999998 334 888999999997 66665555554444443
No 57
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.90 E-value=3.1e-05 Score=85.08 Aligned_cols=120 Identities=11% Similarity=0.031 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC----CCCC-cccccc-cc-CCC-----CCeeeccCChHHHHHHHHh
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST----PEGA-RDYLVP-SR-INP-----GEFFALPQSPQLFKQLLMV 204 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~~ga-~~f~~~-~~-~~~-----~~~~~L~~Spql~~q~ll~ 204 (595)
.-.+++..|.+.+++.+.+.||.||.||+|.+.. ..|. ..|... +. +.. ++.++|+...+...-.+..
T Consensus 59 ~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~ 138 (519)
T 4hvc_A 59 WAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYA 138 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHH
Confidence 3477889999999999999999999999997632 1221 112111 00 111 1347786554433332222
Q ss_pred h-------CCCceEEEecceecCCCC-CC--CCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 205 A-------NFDRYYQITKCFRDEDLR-SD--RQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 205 ~-------g~~rvf~i~~~FR~E~~~-~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
. -.-|+|++|+|||.|-.. .. |..||+|.|.+..|++.++..+.++.++...
T Consensus 139 ~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~ 200 (519)
T 4hvc_A 139 KWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLY 200 (519)
T ss_dssp HHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHH
Confidence 2 135899999999999443 34 7779999999998999888887777765443
No 58
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.79 E-value=2.7e-05 Score=85.46 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCC---CC-C-----Ccc-ccccccCC--CCCeeeccCChHHHHHHHHh
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST---PE-G-----ARD-YLVPSRIN--PGEFFALPQSPQLFKQLLMV 204 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~---~~-g-----a~~-f~~~~~~~--~~~~~~L~~Spql~~q~ll~ 204 (595)
.-.+++..|.+.+|+.|.+.||.||.||+|.+.. .+ | +.+ |.+...-. .++.++|+...+...-.+..
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~ 132 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFS 132 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHH
Confidence 4578889999999999999999999999998743 11 1 111 11111000 03467887655544333332
Q ss_pred h-------CCCceEEEecceecCC-CCCC--CCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 205 A-------NFDRYYQITKCFRDED-LRSD--RQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 205 ~-------g~~rvf~i~~~FR~E~-~~~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
. -.-|+||+|+|||+|- .... |..||+|.|.+..+++.++..+.++.++...
T Consensus 133 ~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~ 194 (518)
T 3ial_A 133 KWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVI 194 (518)
T ss_dssp HHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHH
Confidence 2 1348999999999994 4444 8889999999987789888888888776443
No 59
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.73 E-value=2.4e-05 Score=79.24 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=67.3
Q ss_pred HHHHHH--HHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCC--hHHHHHHHHh--h-CCCceEEEecce
Q psy3762 145 VTMEVR--KFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQS--PQLFKQLLMV--A-NFDRYYQITKCF 217 (595)
Q Consensus 145 i~~~iR--~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~S--pql~~q~ll~--~-g~~rvf~i~~~F 217 (595)
|.+.+| +.|.++||.||.||++.....-.. + .+.+..|+.+.|+.- |... +.-+. . ..-|.|++|+||
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d---~f~d~~g~~l~LRpd~T~~~a-~~~~~~~~~~p~R~~y~g~vf 80 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-N---FFLDRKGNLFSIREDFTKTVL-NHRKRYSPDSQIKVWYADFVY 80 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-S---CEEETTSCEEEECCCHHHHHH-HHHTTCTTCCCEEEECCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-c---ccCCCCCCEEEeCCcChHHHH-HHHhhcCCCCceEEEEeceEE
Confidence 344455 999999999999999987432111 1 222345677778733 2333 22222 1 346999999999
Q ss_pred ecCCCCCCCCccccccccccccCCH----HHHHHHHHHHHHH
Q psy3762 218 RDEDLRSDRQPEFTQIDCETSFMNE----EEIRNLFEEMIRV 255 (595)
Q Consensus 218 R~E~~~~~r~~EFt~lE~e~~~~~~----~dl~~~~E~ll~~ 255 (595)
|.|.... -||+|+++|..+.+. .+++.++-++++.
T Consensus 81 R~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~ 119 (275)
T 1usy_A 81 RYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp EEETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHH
Confidence 9998766 799999999977652 3455555444443
No 60
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=97.71 E-value=0.00027 Score=81.70 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCCCC-----Cc-cccccccCCC-CCeeeccCChHHHHHHHH--hhCC--CceE
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTPEG-----AR-DYLVPSRINP-GEFFALPQSPQLFKQLLM--VANF--DRYY 211 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~g-----a~-~f~~~~~~~~-~~~~~L~~Spql~~q~ll--~~g~--~rvf 211 (595)
..+.+.+|+.|...||.|+.|..+++..... .. .+........ ...++.+..|.+..-+.- ..+. -|+|
T Consensus 496 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlF 575 (795)
T 2rhq_B 496 QHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLY 575 (795)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEE
Confidence 5678889999999999999999888653111 11 1111111111 122333444554433321 1222 4899
Q ss_pred EEecceecCCCCCCCCcccccccccccc
Q psy3762 212 QITKCFRDEDLRSDRQPEFTQIDCETSF 239 (595)
Q Consensus 212 ~i~~~FR~E~~~~~r~~EFt~lE~e~~~ 239 (595)
++|+|||.+.....| .||+|+..-+++
T Consensus 576 EiG~Vf~~d~~~~~~-~e~~~la~l~~G 602 (795)
T 2rhq_B 576 EIGRVFFGNGEGELP-DEVEYLSGILTG 602 (795)
T ss_dssp EEEEEEECCCTTSCC-EEEEEEEEEEES
T ss_pred EEeeEEecCCcccCc-chhhEEEEEEEe
Confidence 999999975433234 899999986543
No 61
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.71 E-value=4.7e-05 Score=83.93 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC---CCC-ccccc-cccCCCCCeeeccCChHHHHHHHHhhC-----
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP---EGA-RDYLV-PSRINPGEFFALPQSPQLFKQLLMVAN----- 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~ga-~~f~~-~~~~~~~~~~~L~~Spql~~q~ll~~g----- 206 (595)
.-.+++..|++.+++.+.++||.||.||.|..... .|- ..|.. .+.. .+.-+||....+..+-.+....
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~-~~~~~~L~PT~E~~~~~l~~~~i~s~~ 351 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI-AETDLYLTGTAEVVLNALHSGEILPYE 351 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEE-TTTTEEECSSTHHHHHHHTTTCEEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEe-cCCCEEEccCCcHHHHHHHhcccccHh
Confidence 45888999999999999999999999999987321 111 01111 1111 1244678666655544432221
Q ss_pred --CCceEEEecceecCCCCC-------CCCccccccccccccCCHH--HHHHHHHHHHHHH
Q psy3762 207 --FDRYYQITKCFRDEDLRS-------DRQPEFTQIDCETSFMNEE--EIRNLFEEMIRVI 256 (595)
Q Consensus 207 --~~rvf~i~~~FR~E~~~~-------~r~~EFt~lE~e~~~~~~~--dl~~~~E~ll~~l 256 (595)
.-|+|++|+|||+|.... -|..||+|.|.+. |+..+ +..+..++++...
T Consensus 352 ~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 352 ALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENA 411 (536)
T ss_dssp GCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHH
T ss_pred hCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHH
Confidence 248999999999997422 3677999999995 55544 7777777776654
No 62
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.64 E-value=0.0001 Score=80.49 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC---CC-Ccccc--ccccCC--CCCeeeccCChHHHHHHHHhh---
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP---EG-ARDYL--VPSRIN--PGEFFALPQSPQLFKQLLMVA--- 205 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~g-a~~f~--~~~~~~--~~~~~~L~~Spql~~q~ll~~--- 205 (595)
.-.+++..|++.+++.+.+.||.||.||.|..... .| ...|. ..+... .+.-+||....+...-.+...
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~ 296 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSV 296 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccC
Confidence 45788899999999999999999999999987321 11 10111 111111 134577887777665554332
Q ss_pred ----CCCceEEEecceecCCC------CCCCCccccccccccccCCH-HHHHHHHHHHHHHHH
Q psy3762 206 ----NFDRYYQITKCFRDEDL------RSDRQPEFTQIDCETSFMNE-EEIRNLFEEMIRVIF 257 (595)
Q Consensus 206 ----g~~rvf~i~~~FR~E~~------~~~r~~EFt~lE~e~~~~~~-~dl~~~~E~ll~~l~ 257 (595)
-.-|+|++|+|||+|-. +--|..||+|.|.+....+. ++..+..++++....
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~ 359 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQM 359 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 13489999999999966 23367799999999755454 688887777776543
No 63
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.58 E-value=4.4e-05 Score=82.83 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC-C--CC-ccccc-cccC-CCCCeeeccCChHHHHHHHHhhC---
Q psy3762 136 QKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP-E--GA-RDYLV-PSRI-NPGEFFALPQSPQLFKQLLMVAN--- 206 (595)
Q Consensus 136 ~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-~--ga-~~f~~-~~~~-~~~~~~~L~~Spql~~q~ll~~g--- 206 (595)
-.-.+++..|++.+++.+.++||.||.||.|..... . |- ..|.. .+.. ..+.-+||....+..+-.+....
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~s 284 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFT 284 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEES
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccc
Confidence 346888999999999999999999999999987421 1 21 01111 1111 12455788766666654432221
Q ss_pred ----CCceEEEecceecCCCCC-------CCCccccccccccccCCHHH--HHHHHHHHHHHH
Q psy3762 207 ----FDRYYQITKCFRDEDLRS-------DRQPEFTQIDCETSFMNEEE--IRNLFEEMIRVI 256 (595)
Q Consensus 207 ----~~rvf~i~~~FR~E~~~~-------~r~~EFt~lE~e~~~~~~~d--l~~~~E~ll~~l 256 (595)
.-|+|++++|||+|.... -|..||+|.|.+. |+..++ ..+..++++...
T Consensus 285 y~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 285 ELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp CCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred hhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHHHHH
Confidence 237999999999997322 3777999999985 655554 777777766544
No 64
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.58 E-value=5.5e-05 Score=82.63 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC---CC-----Ccc-ccccccC------CCCCeeeccCChHHHHHH
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP---EG-----ARD-YLVPSRI------NPGEFFALPQSPQLFKQL 201 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~g-----a~~-f~~~~~~------~~~~~~~L~~Spql~~q~ 201 (595)
.-.+++..|++.+++.+.++||.||.||.|..... .| ..+ |.+.... ..+.-+||....+..+-.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 45788999999999999999999999999987321 11 111 2221100 013457787666665433
Q ss_pred HHhhC-------CCceEEEecceecCCCCC-------CCCccccccccccccCCHH--HHHHHHHHHHHHH
Q psy3762 202 LMVAN-------FDRYYQITKCFRDEDLRS-------DRQPEFTQIDCETSFMNEE--EIRNLFEEMIRVI 256 (595)
Q Consensus 202 ll~~g-------~~rvf~i~~~FR~E~~~~-------~r~~EFt~lE~e~~~~~~~--dl~~~~E~ll~~l 256 (595)
+.... .-|+|++++|||+|.... -|..||+|.|.+. |+..+ +..+..++++...
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHHHHH
Confidence 22211 247999999999998532 3777999999985 55543 3666666666544
No 65
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.56 E-value=0.00011 Score=80.66 Aligned_cols=48 Identities=29% Similarity=0.279 Sum_probs=37.1
Q ss_pred CceEEEecceecC-CCCCC--CCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 208 DRYYQITKCFRDE-DLRSD--RQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 208 ~rvf~i~~~FR~E-~~~~~--r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
-|+||||+|||+| ..... |-.||+|.|.| .|++.++..+..+.++...
T Consensus 210 ~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~~~ 260 (505)
T 1ati_A 210 FGIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVEER 260 (505)
T ss_dssp EEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHHHH
T ss_pred EEEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEECHHHHHHHHHHHHHHH
Confidence 5999999999999 44444 88899999999 7888776665555555443
No 66
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.50 E-value=4.7e-05 Score=83.52 Aligned_cols=115 Identities=17% Similarity=0.108 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHH-HhhhCCCeeccCceeecCCC---CCC-----cc-ccccc-c--C--------------------
Q psy3762 137 KNLRLRYKVTMEVRK-FLDSKKFIEIETPILSKSTP---EGA-----RD-YLVPS-R--I-------------------- 183 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~-ff~~~gF~EV~TPiL~~~~~---~ga-----~~-f~~~~-~--~-------------------- 183 (595)
.-.+++..|.+.+++ ++.+.||.||.||+|.+... .|. .+ |.+.. . .
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 346778899999996 68899999999999987310 111 11 11110 0 0
Q ss_pred -----CCCCeeeccCChHHHHHHHHhh-------CCCceEE-EecceecCCCC----CCCCccccccccccccCCHHHHH
Q psy3762 184 -----NPGEFFALPQSPQLFKQLLMVA-------NFDRYYQ-ITKCFRDEDLR----SDRQPEFTQIDCETSFMNEEEIR 246 (595)
Q Consensus 184 -----~~~~~~~L~~Spql~~q~ll~~-------g~~rvf~-i~~~FR~E~~~----~~r~~EFt~lE~e~~~~~~~dl~ 246 (595)
..+..++|+...+...=.+... -.-++|+ +|+|||+| .+ -.|..||+|.|++. |.+.++..
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~s~ 386 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEEVL 386 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHHHH
Confidence 0234567765444332221111 1348999 99999999 44 25778999999997 77888888
Q ss_pred HHHHHHH
Q psy3762 247 NLFEEMI 253 (595)
Q Consensus 247 ~~~E~ll 253 (595)
+..++++
T Consensus 387 ee~ee~i 393 (522)
T 2cja_A 387 KCAEELH 393 (522)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777777
No 67
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.44 E-value=9.4e-05 Score=80.16 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCC---CCC-----cc-ccccccCCCCCeeeccCChHHHHHHHHhhC-
Q psy3762 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP---EGA-----RD-YLVPSRINPGEFFALPQSPQLFKQLLMVAN- 206 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~ga-----~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g- 206 (595)
.-.+++..+++.+++.+.+.||.||.||.|..... .|- .+ |.+. ..+.-+||....+..+-.++...
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~---~~~~~~~LipTaE~pl~~l~~~ei 259 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVI---DGEDEKYLIATSEQPISAYHAGEW 259 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEE---ETTEEEEECSSTHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEe---CCCCeEEEeccccHHHHHHHhccc
Confidence 56788999999999999999999999999987421 121 11 2211 11344667655555554443321
Q ss_pred --------CCceEEEecceecCCCC-------CCCCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 207 --------FDRYYQITKCFRDEDLR-------SDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 207 --------~~rvf~i~~~FR~E~~~-------~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
.-|+|++++|||+|... --|..||+|.|.+. |+..++..+..++++...
T Consensus 260 ~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 260 FESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp ESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred cccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 34799999999999753 13677999999996 667677777777766544
No 68
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.97 E-value=0.0075 Score=55.75 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=63.9
Q ss_pred CEEEEEEEEEeEeccCCeEEEEEEeCCe-eEEEEECCCc-HHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEE
Q psy3762 16 QVISLCGWVHRKRNHGGIIFIDLRDYTG-LVQIVFDPND-IKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIE 93 (595)
Q Consensus 16 ~~V~i~GwV~~~R~~g~l~Fi~LrD~~g-~lQvv~~~~~-~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iE 93 (595)
+.|+|.|.|.+++...+-..+.|-|+|| .+.|++-.+. .+.-.....+..|++|.|.|.|.. -.|+.+
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~----------fr~~rq 117 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINS----------FRSEVE 117 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEEC----------SSSSCE
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEe----------eCCEEE
Confidence 4589999999999988888899999999 5999987553 222223445899999999999975 357889
Q ss_pred EEEeeEEEeec
Q psy3762 94 ILCRELKILNS 104 (595)
Q Consensus 94 l~v~~i~vls~ 104 (595)
|.++++.++..
T Consensus 118 I~~~~i~~v~d 128 (159)
T 3kf6_A 118 LIAQSFEELRD 128 (159)
T ss_dssp EEEEEEEEECS
T ss_pred EEEEEEEECCC
Confidence 99999999883
No 69
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.95 E-value=0.0011 Score=75.47 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhh-hCCCeeccCceeec
Q psy3762 137 KNLRLRYKVTMEVRKFLD-SKKFIEIETPILSK 168 (595)
Q Consensus 137 ~~l~~rs~i~~~iR~ff~-~~gF~EV~TPiL~~ 168 (595)
.=.+++..|.+.+|+.|. ..||.||.||+|++
T Consensus 99 ~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 99 VGCALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred ChHHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 457888999999999998 56999999999987
No 70
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.95 E-value=0.00044 Score=71.50 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeccCceeecCC-CCCCc-------c-ccccccC----------------------CCC
Q psy3762 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKST-PEGAR-------D-YLVPSRI----------------------NPG 186 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~~ga~-------~-f~~~~~~----------------------~~~ 186 (595)
..+++..|.+.+++ ..+.||.||.||.|.... -++.+ . |.+.... -.+
T Consensus 63 ~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~ 141 (346)
T 3mf2_A 63 YESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSP 141 (346)
T ss_dssp HHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEE
T ss_pred HHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCC
Confidence 45667888899999 888999999999887632 11111 1 1110000 012
Q ss_pred CeeeccCChHHHHHHHHh------hCCCceEEEecceecCCC-CCCCCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 187 EFFALPQSPQLFKQLLMV------ANFDRYYQITKCFRDEDL-RSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 187 ~~~~L~~Spql~~q~ll~------~g~~rvf~i~~~FR~E~~-~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
.-+||....+..+=.+.. ....|+-.+|+|||.|.+ +-.|..+|+|.|+-. +++.+++.+..++++..+-
T Consensus 142 ~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae 218 (346)
T 3mf2_A 142 ADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQ 218 (346)
T ss_dssp EEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHH
T ss_pred CCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHH
Confidence 246776555544433333 223467779999999996 556778999999975 6788999999998887764
No 71
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.91 E-value=0.0069 Score=54.17 Aligned_cols=79 Identities=10% Similarity=0.156 Sum_probs=59.4
Q ss_pred CEEEEEEEEEeEeccCCeEEEEEEeCCe-eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEE
Q psy3762 16 QVISLCGWVHRKRNHGGIIFIDLRDYTG-LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEI 94 (595)
Q Consensus 16 ~~V~i~GwV~~~R~~g~l~Fi~LrD~~g-~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl 94 (595)
..|++.|+|.+++....-.-+.|.|++| .|.|..=.+..+.......+..|++|.|.|.++. -.|...|
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~----------f~g~~qi 101 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS----------FQNKKSL 101 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEE----------ETTEEEE
T ss_pred EEEEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEe----------ECCEEEE
Confidence 3589999999999888777789999999 8999975432211123567899999999999976 2467889
Q ss_pred EEeeEEEeec
Q psy3762 95 LCRELKILNS 104 (595)
Q Consensus 95 ~v~~i~vls~ 104 (595)
.+..+..+..
T Consensus 102 ~~~~ir~v~d 111 (132)
T 3kdf_D 102 VAFKIMPLED 111 (132)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEEcCC
Confidence 9999887764
No 72
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.70 E-value=0.016 Score=49.67 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=67.3
Q ss_pred ccccccccccCCCEEEEEEEEEeEec-------c---CCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEe
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRN-------H---GGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIG 73 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~-------~---g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G 73 (595)
..|++|.. +..|.|.|+|.++.. . |++.=+.|.|.+|.+.+++=.+..+ ..+.+|++|.|.|
T Consensus 6 ~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~-----~~l~~Gdvv~i~g 77 (105)
T 3dm3_A 6 YNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD-----IDVGRGDYVRVRG 77 (105)
T ss_dssp ECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG-----SCCCTTCEEEEEE
T ss_pred eEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccc-----cccCCCCEEEEEE
Confidence 46788876 378999999987642 2 3466689999999999986544321 1799999999999
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
.++.. ..|++||++.+-..+.+|.
T Consensus 78 ~vk~~---------~~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 78 YIREG---------YYGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEEEC---------TTSSEEEEEEEEEEEECCC
T ss_pred EEEEc---------cCCCEEEEeCCceEEEecc
Confidence 99874 2468999999999999885
No 73
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.59 E-value=0.011 Score=51.42 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=65.8
Q ss_pred cccccccccCCCEEEEEEEEEeE---e----ccC---CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeE
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRK---R----NHG---GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGK 74 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~---R----~~g---~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~ 74 (595)
.|++|. .|+.|.+.|.|.++ | +.| .+..+.|.|++|.|.+++=.+..+ ....+..|++|.|+|.
T Consensus 9 ~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~---~~~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 9 TISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIK---LLKKFREGDVIRIKDV 82 (115)
T ss_dssp CTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGG---GGGTCCTTSEEEEEEE
T ss_pred EHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhh---hhhcCCCCCEEEEEee
Confidence 466665 48999999999988 2 233 588999999999999987655322 2357999999999998
Q ss_pred EEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 75 VCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 75 v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
+.... -.|.++|.+.+...+.+++
T Consensus 83 ~v~~~--------f~g~~qL~~~~~~~i~~~~ 106 (115)
T 2k50_A 83 NIRGG--------FGGRKEAHLMPRSTVEVLD 106 (115)
T ss_dssp EECCC--------SSSSCEEEECTTCCEEEES
T ss_pred EEccc--------cCCeEEEEECCCceEEECC
Confidence 86431 2467888888776666553
No 74
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.53 E-value=0.017 Score=51.82 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=59.5
Q ss_pred CEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHH-HHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEE
Q psy3762 16 QVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIK-IYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEI 94 (595)
Q Consensus 16 ~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~-~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl 94 (595)
..|++.|+|.+++....-.-+.|.|++|.|.|..=.+..+ .......+..|++|.|.|.++. -.|...|
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~----------f~g~~qi 106 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKS----------FQNRRSI 106 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEE----------ETTEEEE
T ss_pred EEEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEE----------eCCEEEE
Confidence 4599999999999888766789999999999886433211 1123567999999999999975 3567889
Q ss_pred EEeeEEEeec
Q psy3762 95 LCRELKILNS 104 (595)
Q Consensus 95 ~v~~i~vls~ 104 (595)
.+..+..+..
T Consensus 107 ~~~~ir~v~d 116 (136)
T 4gop_B 107 SSGHMRPVID 116 (136)
T ss_dssp EESEEEECSS
T ss_pred EEEEEEECCC
Confidence 9998887753
No 75
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=96.52 E-value=0.011 Score=51.09 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=63.2
Q ss_pred ccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCC
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTN 83 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~ 83 (595)
.++.+......+..|+|.|.|.+.-..-. +..+|++|.|+|-++.+. + .-..+++++-|.|.|.|-+.
T Consensus 26 ~TV~~a~~~~Dd~~V~L~G~Iv~~~~~d~---Y~F~D~TG~I~VeId~~~---w-~g~~v~p~~~Vri~GevDkd----- 93 (109)
T 1nnx_A 26 TTVESAKSLRDDTWVTLRGNIVERISDDL---YVFKDASGTINVDIDHKR---W-NGVTVTPKDTVEIQGEVDKD----- 93 (109)
T ss_dssp CCHHHHTTSCSSEEEEEEEEEEEEEETTE---EEEEETTEEEEEECCGGG---S-TTCCCCTTSCEEEEEEEEEE-----
T ss_pred EeHHHHhhCcCCCeEEEEEEEEEEeCCCe---EEEECCCccEEEEEChhh---c-CCcccCCCCEEEEEEEECCC-----
Confidence 46777777778899999999976543323 457999999999998652 1 12468999999999999864
Q ss_pred CCCcCCccEEEEEeeEEEeec
Q psy3762 84 NTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 84 ~~~~~~g~iEl~v~~i~vls~ 104 (595)
-...||.|.+|+++.+
T Consensus 94 -----~~~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 94 -----WNSVEIDVKQIRKVNP 109 (109)
T ss_dssp -----TTEEEEEEEEEEEC--
T ss_pred -----CCceEEEEEEEEEccC
Confidence 2346999999998753
No 76
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.49 E-value=0.024 Score=47.86 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=63.5
Q ss_pred ccccccccccCCCEEEEEEEEEeEe---c----cC---CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEe
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKR---N----HG---GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIG 73 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R---~----~g---~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G 73 (595)
..|++|.. |+.|+|.|+|.++- . .| ++.=+.|.|.+|.+.+++=.+..+. .+..||+|.|.|
T Consensus 3 ~kI~dl~~---g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~-----~i~~Gdvv~i~g 74 (97)
T 3e0e_A 3 YKISELMP---NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADF-----EVKKGDIAEVSG 74 (97)
T ss_dssp ECGGGCCT---TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGC-----CCCTTCEEEEEE
T ss_pred eEHHHCCC---CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCcccc-----ccCCCCEEEEEE
Confidence 35888875 47899999998764 1 23 4667899999999999975543321 699999999999
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.++.. .|.+||.+.+...+.+|
T Consensus 75 ~v~~~----------~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 75 YVKQG----------YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEEEC------------CEEEEEEEEEEEECC
T ss_pred EEEEc----------CCeEEEEECCCcEEEEC
Confidence 98763 46899999998887766
No 77
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.30 E-value=0.0035 Score=67.54 Aligned_cols=109 Identities=11% Similarity=-0.028 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHhh-hCC-CeeccCceeecCCCCCCccccccccCCCCCeeeccC-ChHHHHHHH---Hhh---C-C
Q psy3762 138 NLRLRYKVTMEVRKFLD-SKK-FIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQ-SPQLFKQLL---MVA---N-F 207 (595)
Q Consensus 138 ~l~~rs~i~~~iR~ff~-~~g-F~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~-Spql~~q~l---l~~---g-~ 207 (595)
=..+|+.|++..+.-|. ++| +.||+||+....-..|.-+ . +. +||+. +-|-++..+ +-. . .
T Consensus 103 G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d---~----~~--~~LRPeTaqg~~~nfk~~~~s~r~~LP 173 (459)
T 3ikl_A 103 GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDS---A----FR--GGLRENLLHGALEHYVNCLDLVNKRLP 173 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCS---C----CT--TB-CSCSHHHHHHHTTTTTGGGTTBSS
T ss_pred HHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchh---h----hc--ceECCCCChhHHHHHhhhhhhccccCC
Confidence 35788999985555554 355 7779999955433333211 0 11 56765 444443331 111 1 2
Q ss_pred CceEEEecceecCC--CCC----CCCccccccccccccCCHHHHHHHHHHHHHHH
Q psy3762 208 DRYYQITKCFRDED--LRS----DRQPEFTQIDCETSFMNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 208 ~rvf~i~~~FR~E~--~~~----~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l 256 (595)
-++.|||+|||+|. +.+ -|-.||+|.|++. |++-++..+..+.++...
T Consensus 174 ~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 174 YGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp EEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 37999999999995 333 3556999999984 777766666666655544
No 78
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.024 Score=49.30 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=70.0
Q ss_pred ccccccccccccCCCEEEEEEEEEeEe---------ccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE
Q psy3762 2 RTHYCGNITEKLLDQVISLCGWVHRKR---------NHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII 72 (595)
Q Consensus 2 ~t~~~~~l~~~~~g~~V~i~GwV~~~R---------~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~ 72 (595)
+.+.|++|+...- ..+|+|||.++- ..|++.=++|.|.+|.|++++-.+.. -++...|..|+++.|+
T Consensus 3 ~~~~Is~L~p~~~--~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~--~~f~~~l~eG~vy~Is 78 (114)
T 1ynx_A 3 PIFAIEQLSPYQN--VWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFA--TKFNEILQEGKVYYVS 78 (114)
T ss_dssp CBCCGGGCCTTTC--CCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHH--HHHHHHSCSSSEEEEE
T ss_pred ceEEHHHCCCCCC--ceEEEEEEEEeccceEEecCCCCceEEEEEEECCCCeEEEEECHHHH--HHHHhhcccCcEEEEC
Confidence 3577899976432 488999998652 13578888999999999999976532 2345669999999999
Q ss_pred e-EEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 73 G-KVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 73 G-~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
+ .|+.. .+.- +...+.+||....-+.+.+|.
T Consensus 79 ~~~V~~a-~~~y--~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 79 KAKLQPA-KPQF--TNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp SCEEEEC-CTTT--SSSSSCEEEEECSSCEEEESC
T ss_pred CcEEEEC-CCCc--ccCCCCEEEEECCCCEEEECC
Confidence 6 45443 2222 224578999998888888774
No 79
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=95.82 E-value=0.089 Score=55.43 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=66.3
Q ss_pred cccCCCEEEEEEEEEeE-ec-cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcC
Q psy3762 11 EKLLDQVISLCGWVHRK-RN-HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLI 88 (595)
Q Consensus 11 ~~~~g~~V~i~GwV~~~-R~-~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~ 88 (595)
+-...+.++|.|.|.+. +. .|+=+|+.|.|+++.+.|++=.....+-+.+..|.+||.|.|.|.++.
T Consensus 280 ~~~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~----------- 348 (402)
T 3au7_A 280 RLENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK----------- 348 (402)
T ss_dssp SCCTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET-----------
T ss_pred ccccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC-----------
Confidence 33456889999999987 44 578899999999999999986543346677889999999999999753
Q ss_pred CccEEEEEeeEEEeecC
Q psy3762 89 SGNIEILCRELKILNSS 105 (595)
Q Consensus 89 ~g~iEl~v~~i~vls~~ 105 (595)
| .|.++++++++-+
T Consensus 349 -g--tLnvEk~~v~~l~ 362 (402)
T 3au7_A 349 -D--TINLEKIQIVELA 362 (402)
T ss_dssp -T--EEEEEEEEEEECC
T ss_pred -C--EEEEEEEEEcccC
Confidence 3 7999999999865
No 80
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=95.78 E-value=0.0047 Score=66.78 Aligned_cols=119 Identities=12% Similarity=0.026 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHH-h-hhCCCeeccCceeecCC-CCC---Cc-----ccccc-----------cc---CCCCCeeecc
Q psy3762 138 NLRLRYKVTMEVRKF-L-DSKKFIEIETPILSKST-PEG---AR-----DYLVP-----------SR---INPGEFFALP 192 (595)
Q Consensus 138 ~l~~rs~i~~~iR~f-f-~~~gF~EV~TPiL~~~~-~~g---a~-----~f~~~-----------~~---~~~~~~~~L~ 192 (595)
=.+++..|.+.+++. + .+.|+.||.||+|.+.. -.. .+ .+... +. ...+..+||+
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 477889999988877 4 58899999999998753 111 11 11100 00 0012235676
Q ss_pred C--ChHH---HHHHHHhh--C-CCceEEEeccee---cCCCC---CCCCccccccccccccCCHHHHHHHHHHHHHHHH
Q psy3762 193 Q--SPQL---FKQLLMVA--N-FDRYYQITKCFR---DEDLR---SDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIF 257 (595)
Q Consensus 193 ~--Spql---~~q~ll~~--g-~~rvf~i~~~FR---~E~~~---~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~ 257 (595)
. +|.. |+..+-.. . .-+++|||+||| ||-+. -.|-.||+|.|.+. |++.++..+..+.++....
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~~ 218 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHRL 218 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHHHHHH
Confidence 4 2222 22222111 1 348999999999 68643 13555999999995 7887776666665555443
No 81
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=95.53 E-value=0.072 Score=53.42 Aligned_cols=78 Identities=10% Similarity=0.158 Sum_probs=58.9
Q ss_pred EEEEEEEEEeEeccCCeEEEEEEeCCe-eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEE
Q psy3762 17 VISLCGWVHRKRNHGGIIFIDLRDYTG-LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEIL 95 (595)
Q Consensus 17 ~V~i~GwV~~~R~~g~l~Fi~LrD~~g-~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~ 95 (595)
.|++.|+|.++...+.-.-+.|.|++| .|.|.+=.+..+.-.....+..|++|.|.|.|+. -.+...|.
T Consensus 73 ~V~ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~----------f~g~~qi~ 142 (270)
T 2pi2_A 73 QVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS----------FQNKKSLV 142 (270)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEE----------ETTEEEEE
T ss_pred EEEEEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEe----------cCCeeEEE
Confidence 599999999998877767789999999 8998865432111112456899999999999976 34678899
Q ss_pred EeeEEEeec
Q psy3762 96 CRELKILNS 104 (595)
Q Consensus 96 v~~i~vls~ 104 (595)
+..|..+..
T Consensus 143 i~~ir~v~d 151 (270)
T 2pi2_A 143 AFKIMPLED 151 (270)
T ss_dssp EEEEEECSC
T ss_pred EEEEEecCC
Confidence 998887764
No 82
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.40 E-value=0.055 Score=60.35 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCC--------CCC-CccccccccCCCCCeeeccCC--hHHHHHHHHhhC-----
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKST--------PEG-ARDYLVPSRINPGEFFALPQS--PQLFKQLLMVAN----- 206 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~--------~~g-a~~f~~~~~~~~~~~~~L~~S--pql~~q~ll~~g----- 206 (595)
..+.+.+|+.|...||.|+.|+.+++.. +.+ ...+...... ..+.-.|++| |.+-.- ++.+
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPi-s~e~svmRtsLlpgLL~~--l~~N~~~~~ 470 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPK-TAEFQVARTTLLPGLLKT--IAANRKMPL 470 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCS-SGGGSEECSCSHHHHHHH--HHHTTTSCS
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCC-chhHhHHHHHHHHHHHHH--HHHHhcCCC
Confidence 4567889999999999999999998631 111 1111111000 1122235554 444332 2322
Q ss_pred CCceEEEecceecCCCCCCCCccccccccccccC--CHHHHHHHHHHHHHHH
Q psy3762 207 FDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM--NEEEIRNLFEEMIRVI 256 (595)
Q Consensus 207 ~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~--~~~dl~~~~E~ll~~l 256 (595)
.-|+|++|+|||.++.+..|.+|+.|+..-+.+. ++.++...++.++..+
T Consensus 471 ~vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 471 PLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp CEEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred ceEEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 2479999999998765555555999998876654 4788888888766554
No 83
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=94.87 E-value=0.067 Score=51.68 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCCC---C--C-cc-ccccccCCCCCeeeccCChHHHHHHHHhhC----C--Cc
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTPE---G--A-RD-YLVPSRINPGEFFALPQSPQLFKQLLMVAN----F--DR 209 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~---g--a-~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~~g----~--~r 209 (595)
..+.+.+|+.|...||.||-|-.+++...- + . .. ..+.... ..+.-.|++|---.+=..++.+ . -|
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~ 85 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPL-SADLNCMRQTLLFGGLESIAHNANRKNADLK 85 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGG-GCSCCEECSCSHHHHHHHHHHC------CCE
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCc-chhHHHHHHHhHHHHHHHHHHHhcCCCCCee
Confidence 467789999999999999999999874210 0 0 01 1111001 1122346666443333323332 2 38
Q ss_pred eEEEecceecCCCCC-----CCCc-ccccccccccc-------------CCHHHHHHHHHHHHHHH
Q psy3762 210 YYQITKCFRDEDLRS-----DRQP-EFTQIDCETSF-------------MNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 210 vf~i~~~FR~E~~~~-----~r~~-EFt~lE~e~~~-------------~~~~dl~~~~E~ll~~l 256 (595)
+||||+||+.++.+. ..++ |..++-+-+++ +|+.|+...+|.++..+
T Consensus 86 lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 86 FFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred EEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999865331 1234 77777776655 35678888888877655
No 84
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=94.59 E-value=0.091 Score=50.72 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCCC---C--C-cc-ccccccCCCCCeeeccCChHHHHHHHHh----hCCC--c
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTPE---G--A-RD-YLVPSRINPGEFFALPQSPQLFKQLLMV----ANFD--R 209 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~---g--a-~~-f~~~~~~~~~~~~~L~~Spql~~q~ll~----~g~~--r 209 (595)
..+.+.+|+.|...||.||-|-.+++...- + . .. ..+.... ..+.-.|++|---.+=..++ .+.. |
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~ 85 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPL-SQELNCMRQTLLFGGLETLSHNLRRKHLSLY 85 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBS-CSSEEEECSSSHHHHHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCc-cHHHHHHHHHhHHHHHHHHHHHHcCCCCCee
Confidence 467789999999999999999999874210 1 0 01 1111001 12334567665433322222 3343 8
Q ss_pred eEEEecceecCCCCC-----CCCc-ccccccccccc-------------CCHHHHHHHHHHHHHHH
Q psy3762 210 YYQITKCFRDEDLRS-----DRQP-EFTQIDCETSF-------------MNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 210 vf~i~~~FR~E~~~~-----~r~~-EFt~lE~e~~~-------------~~~~dl~~~~E~ll~~l 256 (595)
+||||+||+.++.+. ..++ |..++-..+++ +|+.|+...+|.++..+
T Consensus 86 lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 86 LFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999765321 1234 77777666544 47899999999888765
No 85
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=93.82 E-value=0.46 Score=41.31 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=61.7
Q ss_pred cccccccccCCC-EEEEEEEEEeE---e----ccC--CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE-e
Q psy3762 5 YCGNITEKLLDQ-VISLCGWVHRK---R----NHG--GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII-G 73 (595)
Q Consensus 5 ~~~~l~~~~~g~-~V~i~GwV~~~---R----~~g--~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~-G 73 (595)
.|++|.. |+ .|.+.|.|.++ | ..| .+.=+.|.|.+|.|.+.+=.+.. ..+..|++|.|. |
T Consensus 4 ~I~dL~~---~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~------~~~~~G~vv~i~~g 74 (119)
T 1o7i_A 4 KVGNLKP---NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA------GSIKEGQVVKIENA 74 (119)
T ss_dssp CGGGCCT---TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT------TCCCTTCEEEEEEE
T ss_pred EHHHCcC---CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh------hcCCCCCEEEEEeE
Confidence 4777765 43 69999999887 4 234 47778999999999888754432 358999999999 8
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
.+.. -.|.++|.+.+...+.++.
T Consensus 75 ~v~~----------~~g~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 75 WTTA----------FKGQVQLNAGSKTKIAEAS 97 (119)
T ss_dssp EEEE----------ETTEEEEEECTTCEEEECC
T ss_pred EEEE----------eCCEEEEEECCCEEEEEcC
Confidence 8765 3578999998865555543
No 86
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=93.56 E-value=0.46 Score=41.63 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=52.1
Q ss_pred cccCCCEEEEEEEEEeEeccCCeEEEEEEe-CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCC
Q psy3762 11 EKLLDQVISLCGWVHRKRNHGGIIFIDLRD-YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLIS 89 (595)
Q Consensus 11 ~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD-~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~ 89 (595)
.+++|+.|++.|+|.+++..|+.+ .|.. +.+.++|.+..... ...+.+|.|.|+|..
T Consensus 18 ~~fvgk~VrivGkV~~~~~~g~~~--~l~s~Dg~~Vtv~l~~p~~--------~~l~~~vEViG~V~~------------ 75 (121)
T 3kdf_A 18 AQFIDKPVCFVGRLEKIHPTGKMF--ILSDGEGKNGTIELMEPLD--------EEISGIVEVVGRVTA------------ 75 (121)
T ss_dssp GGGTTCEEEEEEEEEEECTTSSEE--EEECTTSCEEEEECSSCCS--------SCCCSEEEEEEEECT------------
T ss_pred HhhCCCeEEEEEEEEEEcCCCCEE--EEEeCCCCEEEEEeCCCCC--------cccCcEEEEEEEECC------------
Confidence 478999999999999999878743 3554 45689999876311 122559999999963
Q ss_pred ccEEEEEeeEEEeecC
Q psy3762 90 GNIEILCRELKILNSS 105 (595)
Q Consensus 90 g~iEl~v~~i~vls~~ 105 (595)
...|.+.++.-++..
T Consensus 76 -~~tI~~~~~~~fg~~ 90 (121)
T 3kdf_A 76 -KATILCTSYVQFKED 90 (121)
T ss_dssp -TSCEEEEEEEECCCS
T ss_pred -CCeEEEEEEEecCCC
Confidence 235888887777754
No 87
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=93.33 E-value=0.39 Score=46.30 Aligned_cols=86 Identities=9% Similarity=0.254 Sum_probs=57.8
Q ss_pred CEEEEEEEEEeEeccC--------CeEEEEEEeCCee---EEEEECCCcHHHHHHH---hcCCCCcEEEEEeEEEeCCCC
Q psy3762 16 QVISLCGWVHRKRNHG--------GIIFIDLRDYTGL---VQIVFDPNDIKIYKIA---KIIRNEFCLQIIGKVCSRPNK 81 (595)
Q Consensus 16 ~~V~i~GwV~~~R~~g--------~l~Fi~LrD~~g~---lQvv~~~~~~~~~~~~---~~l~~es~V~V~G~v~~~~~~ 81 (595)
+.|.|.|.|-..+-.- ...|+.|-|.||. +.|.++... ..... .....|.+|.|+|++..-...
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~--~~~~gl~l~~~~~G~iV~VkG~i~~~r~~ 163 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ--FKEVGLTLDKKNYGKIVELEGEIYNWYDS 163 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH--HHTTTCCTTSCCTTCEEEEEEEEEECCCS
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH--hhccCccccccCCCeEEEEEEEEEeeccc
Confidence 4699999999887653 3589999999984 777666431 11111 123479999999999864221
Q ss_pred CCCCCcCCccEEEEEeeEEEeecC
Q psy3762 82 TNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 82 ~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.-+. ..-+-||+|+++.+++..
T Consensus 164 ~~~~--~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 164 INVS--KKPDRELKVSKITVLSHR 185 (220)
T ss_dssp TTTT--SCCCEEEEEEEEEEEESS
T ss_pred cccc--cccceEEEEEEEEEeccC
Confidence 1110 111569999999999864
No 88
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=93.29 E-value=0.24 Score=48.58 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=68.7
Q ss_pred ccccccccccccCCCEEEEEEEEEeE---ec------cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE
Q psy3762 2 RTHYCGNITEKLLDQVISLCGWVHRK---RN------HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII 72 (595)
Q Consensus 2 ~t~~~~~l~~~~~g~~V~i~GwV~~~---R~------~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~ 72 (595)
..+.|++|+... ..++|+|||.++ |. .|++.-++|.|.+|.|++++-.+. .-++...|..|+++.++
T Consensus 7 ~~~~I~~L~p~~--~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~--~~~~~~~l~~G~vy~i~ 82 (246)
T 1jmc_A 7 KVVPIASLTPYQ--SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQ--VDKFFPLIEVNKVYYFS 82 (246)
T ss_dssp CBCCGGGCCTTC--CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHH--HHHHGGGCCTTCEEEEE
T ss_pred ceEEHHHCCCCC--CceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHH--HHHhhhhcccCCEEEEC
Confidence 457799997643 358999999876 32 346777899999999999987542 23345679999999999
Q ss_pred e-EEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 73 G-KVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 73 G-~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
+ .|+.. .+. .+...+.+||....-+.+.+|.
T Consensus 83 ~~~v~~~-~~~--y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 83 KGTLKIA-NKQ--FTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CCEEEEC-CGG--GCCCCCSEEEECCTTCEEEECC
T ss_pred CCEEEEc-ccC--cccCCCCEEEEEcCCcEEEEcc
Confidence 6 44432 111 1224578999998776666664
No 89
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.25 E-value=0.25 Score=53.06 Aligned_cols=100 Identities=12% Similarity=0.123 Sum_probs=69.1
Q ss_pred CccccccccccccCCCEEEEEEEEEeE---ec------cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEE
Q psy3762 1 MRTHYCGNITEKLLDQVISLCGWVHRK---RN------HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQI 71 (595)
Q Consensus 1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~---R~------~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V 71 (595)
++.+.|++|+... ..++|.|||.++ |. .|++.-++|.|.+|.|++++-.+. .-++...|..|+++.|
T Consensus 1 ~~~~~I~~L~p~~--~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G~I~at~~~~~--~~~f~~~l~eG~vy~I 76 (444)
T 4gop_C 1 MPIYPIEGLSPYQ--NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDA--VDRFYPLLQENHVYLI 76 (444)
T ss_dssp --CCCSTTCCTTC--CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEETHH--HHHHTTTCCTTCEEEE
T ss_pred CCceeHHHCCCCC--cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCCEEEEEEeHHH--HHHHHHheecCCEEEE
Confidence 4678899998754 358999999854 32 257788899999999999998663 2234467999999999
Q ss_pred EeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 72 IGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 72 ~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
++.-++...+. .+...+.+||....-+.+.++.
T Consensus 77 s~~~V~~~~~~--y~~~~~~~ei~~~~~T~V~~~~ 109 (444)
T 4gop_C 77 SKARVNIAKKQ--FSNLQNEYEITFENSTEIEECT 109 (444)
T ss_dssp ESCEEEECCGG--GCSCCCSEEEEECTTCEEEECS
T ss_pred cCCEEEecCCc--cccCCCCEEEEEcCCcEEEEcc
Confidence 96433332221 1224568999997766666654
No 90
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=92.10 E-value=0.47 Score=54.57 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhhCCCeeccCceeecCCC-----CCCccccccccCCCC-CeeeccCChHHHHHHH--HhhC---CCce
Q psy3762 142 RYKVTMEVRKFLDSKKFIEIETPILSKSTP-----EGARDYLVPSRINPG-EFFALPQSPQLFKQLL--MVAN---FDRY 210 (595)
Q Consensus 142 rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-----~ga~~f~~~~~~~~~-~~~~L~~Spql~~q~l--l~~g---~~rv 210 (595)
...+.+.+|+.|...||.|+.|-.+++... .+...+........+ ..++.+..|.+..-+. ...+ --|+
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrl 570 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALL 570 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEE
Confidence 456788999999999999999888876421 011112111111111 2233344555543332 1123 2489
Q ss_pred EEEecceecCCCCCCCCcccccccccccc------------CCHHHHHHHHHHHHHHH
Q psy3762 211 YQITKCFRDEDLRSDRQPEFTQIDCETSF------------MNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 211 f~i~~~FR~E~~~~~r~~EFt~lE~e~~~------------~~~~dl~~~~E~ll~~l 256 (595)
|++|+||| + .||+|+..-+++ +++.|+...+|.++..+
T Consensus 571 FEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 571 FEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 99999999 2 788888876665 47899999999998876
No 91
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=90.66 E-value=1.5 Score=37.48 Aligned_cols=85 Identities=13% Similarity=0.010 Sum_probs=62.7
Q ss_pred cccccccccCCCEEEEEEEEEeEecc--C-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE-eEEEeCCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKRNH--G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII-GKVCSRPN 80 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R~~--g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~-G~v~~~~~ 80 (595)
.|.+|... ++.|.+.|+|.++-.. | ....+.|.|.+|+|-+++=.+. .+..+..|++|.|. |.+..
T Consensus 7 kI~dl~~~--~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~-----~~~~~~~G~~V~i~n~~v~~--- 76 (109)
T 2kbn_A 7 KIVDIVEN--GQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNA-----ELPLLEQGESYLLRSVVVGE--- 76 (109)
T ss_dssp CTTTCCST--TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGG-----CCCCCCTTCEEEEEEEEEEE---
T ss_pred EHHHCCCC--CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECcc-----cccccCCCCEEEEEEEEEEE---
Confidence 36666542 6789999999887543 2 3446899999999998875421 23578999999999 67765
Q ss_pred CCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 81 KTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 81 ~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
-.|.++|.+.+...+.+..
T Consensus 77 -------~~G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 77 -------YNDRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp -------ETTEEEEEECSSSEEEECS
T ss_pred -------ECCEEEEEECCceEEEECC
Confidence 3688999998877666643
No 92
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=90.08 E-value=0.37 Score=57.70 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=53.6
Q ss_pred cccccccc----ccCCCEEEEEEEEEeEecc----C-CeEEEEEEeCCeeEEEEECCCcHHHHHHH-hcCCCCcEEEEEe
Q psy3762 4 HYCGNITE----KLLDQVISLCGWVHRKRNH----G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIA-KIIRNEFCLQIIG 73 (595)
Q Consensus 4 ~~~~~l~~----~~~g~~V~i~GwV~~~R~~----g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~-~~l~~es~V~V~G 73 (595)
.++++|.. ...|+.|+|+|.|.++|.. | .++|+.|.|.+|.+.|++-++. ++.. ..|..+.+|.|+|
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~---~~~~~~~l~~~~~~~v~G 1103 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRA---YEGVSPKLKEDIPLLVLA 1103 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC------------CEEEEETTEEEEEC----------------CTTCEEEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHH---HHHHHHHhccCCEEEEEE
Confidence 45677752 3468899999999887753 3 4999999999999999988763 3333 3479999999999
Q ss_pred EEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 74 KVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 74 ~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
+|..+ . .+.|.++++.-++.+
T Consensus 1104 ~v~~~----------~-~~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1104 EVEKG----------E-ELRVLAQAVWTLEEV 1124 (1220)
T ss_dssp EEC----------------CEEEEEEEEHHHH
T ss_pred EEEEC----------C-CcEEEEeeeecHHHH
Confidence 99753 1 356888888766543
No 93
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=89.25 E-value=2.4 Score=38.04 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=49.5
Q ss_pred ccccCCCEEEEEEEEEeEeccCCeEEEEEEeC-CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcC
Q psy3762 10 TEKLLDQVISLCGWVHRKRNHGGIIFIDLRDY-TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLI 88 (595)
Q Consensus 10 ~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~-~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~ 88 (595)
-.+++|++|+|.|+|.+.-..|+.+ .|... ++.|+|..++.. .-..+-+|.|.|+|..
T Consensus 38 L~~fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg~~VtV~l~~pL--------~~~~~~~VEViG~V~~----------- 96 (142)
T 2pi2_E 38 LAQFIDKPVCFVGRLEKIHPTGKMF--ILSDGEGKNGTIELMEPL--------DEEISGIVEVVGRVTA----------- 96 (142)
T ss_dssp GGGSTTCEEEEEEEEEEECTTSSEE--EEECTTSCEEEEECSSCC--------SSCCCSEEEEEEEECT-----------
T ss_pred HHhhCCCEEEEEEEEeEEcCCCCEE--EEEeCCCcEEEEEeCCCC--------CccCCCEEEEEEEECC-----------
Confidence 3578999999999999995556533 35544 558998876431 1234779999999953
Q ss_pred CccEEEEEeeEEEeec
Q psy3762 89 SGNIEILCRELKILNS 104 (595)
Q Consensus 89 ~g~iEl~v~~i~vls~ 104 (595)
...|.+.++.-++.
T Consensus 97 --~~tI~~~~~~~fGd 110 (142)
T 2pi2_E 97 --KATILCTSYVQFKE 110 (142)
T ss_dssp --TSCEEEEEEEECCC
T ss_pred --CCcEEEEEEEecCC
Confidence 13467777666664
No 94
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=88.96 E-value=4.4 Score=34.31 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=60.0
Q ss_pred ccccccccccCCCEEEEEEEEEeEe-----ccCC---eEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE-eE
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKR-----NHGG---IIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII-GK 74 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R-----~~g~---l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~-G~ 74 (595)
..|++|... ...|.+.|.|.++- ..|+ ++=+.|.|.+|.|.+.+=.+. +..|++|.|. |.
T Consensus 4 ~kI~dl~pg--~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~---------l~~Gdvv~i~ng~ 72 (106)
T 2k75_A 4 VKIRDVSLS--TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ---------LQDSDVVRIDNAR 72 (106)
T ss_dssp CCSTTCCTT--CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC---------CCTTEEEEEEEEE
T ss_pred EEHHHcCCC--CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc---------cCCCCEEEEEeeE
Confidence 357777653 24578888886542 3454 777899999999988875542 9999999999 77
Q ss_pred EEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 75 VCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 75 v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
+.. -.|.++|.+.+...+.+..
T Consensus 73 v~~----------~~g~~~L~v~~~~~I~~~~ 94 (106)
T 2k75_A 73 VAQ----------FNGYLSLSVGDSSRIESVN 94 (106)
T ss_dssp EEE----------ETTEEEEEECTTSEEEECC
T ss_pred EeE----------ECCEEEEEECCcEEEEECC
Confidence 765 3678999998776666654
No 95
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=86.48 E-value=2 Score=37.07 Aligned_cols=59 Identities=19% Similarity=0.381 Sum_probs=42.7
Q ss_pred ccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeC-CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 6 CGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDY-TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 6 ~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~-~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
.+.| .+++|++|+|-|+|.+.+. + . +.|... .+.++|.++... .+..+.+|.|.|+|..
T Consensus 10 ~~~L-~~~~g~~VrivGkV~~~~g--~-~-~~l~s~d~~~Vtv~l~~~~--------~~~~~~~vEViG~V~~ 69 (114)
T 4gop_A 10 SSML-GQYVGQTVRIVGKVHKVTG--N-T-LLMQTSDLGNVEIAMTPDS--------DVSSSTFVEVTGKVSD 69 (114)
T ss_dssp TTTG-GGGTTSEEEEEEEEEEEET--T-E-EEEECTTSCEEEEECCSSC--------CGGGCSEEEEEEEECT
T ss_pred HHHH-HhhCCCeEEEEEEEeeeCC--C-E-EEEEeCCCCEEEEEeCCCC--------CcccCcEEEEEEEEcC
Confidence 3444 4689999999999999985 3 3 345543 457888877542 2446899999999964
No 96
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=85.97 E-value=2.3 Score=36.83 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=40.4
Q ss_pred EEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 45 VQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 45 lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
++||+-.+.. +.++.++.|+-|.|+|.+..+.. + ...++|++++|+.++...
T Consensus 49 i~vv~~Gk~A---E~~~~l~kGs~V~VeGrL~trs~---~----G~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 49 ISAVALGDLA---LLLADTPLGTEMQVQGFLAPARK---D----SVKVKLHLQQARRIAGSM 100 (115)
T ss_dssp EEEEEETHHH---HHHTTCCTTCEEEEEEEEEESST---T----CSSEEEEEEEEEECCCSC
T ss_pred EEEEEEhHHH---HhhhccCCCCEEEEEEEEEECCC---C----CCEEEEEEEEEEEcCCCC
Confidence 8888876543 33477999999999999998631 1 247999999999998754
No 97
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=82.52 E-value=0.24 Score=53.58 Aligned_cols=47 Identities=30% Similarity=0.518 Sum_probs=33.4
Q ss_pred eeeEEecCE----EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCC-CCCccceeccHHHHHHHHcCC
Q psy3762 480 AYDLIINGW----EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYG-APPHGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 480 ~fDl~~~G~----Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G-~PPh~G~glGlDRLvm~l~g~ 552 (595)
-|+.+.+|. -|+||+. |..++..|. | -.|..|||||+|||+.+|...
T Consensus 310 vFe~~~~~~~~~~~i~~GGR-------------------------YD~L~~~f~-g~~~pavGfaiGieRli~~L~e~ 361 (465)
T 3net_A 310 VYETTLIGHEALGSICSGGR-------------------------YEELVGTFI-GEKMPGVGISIGLTRLISRLLKA 361 (465)
T ss_dssp EEEEEETTCGGGCCSSEEEE-------------------------ESSSSGGGT-CSCCCEEEEEEEHHHHHHHHHHT
T ss_pred EEEEEECCCCccceeccccc-------------------------HHHHhhhhc-CCCCceeeeeccHHHHHHHHHHc
Confidence 377777762 6788876 333455444 4 358999999999999988754
No 98
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=80.75 E-value=0.92 Score=47.93 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=34.9
Q ss_pred eeeEEecCE--EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCC
Q psy3762 480 AYDLIINGW--EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 480 ~fDl~~~G~--Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~ 552 (595)
-|+.+.+|. .|+||+. |..+++.+. |--|..|||+|+|||+.++...
T Consensus 282 vFe~~~~~~g~~i~~GGR-------------------------YD~L~~~fG-~~~pavGfaiglerL~~~l~~~ 330 (400)
T 3od1_A 282 VFEGYGNRLGVPLCSGGR-------------------------YDELLSKFH-RPAQATGFGVRIDLLVEALNGE 330 (400)
T ss_dssp EEEEEETTCSSEEEEEEE-------------------------CTTHHHHTT-CCCCEEEEEEEHHHHHHHHCC-
T ss_pred EEEEEECCCCCeeecccc-------------------------cchhhhccC-CCCCEEEEEeeHHHHHHHHHhc
Confidence 478888764 8899877 334566653 2478999999999999988754
No 99
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=73.79 E-value=0.86 Score=47.72 Aligned_cols=45 Identities=22% Similarity=0.538 Sum_probs=31.9
Q ss_pred eeeEEecCE--EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHc
Q psy3762 480 AYDLIINGW--EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMT 550 (595)
Q Consensus 480 ~fDl~~~G~--Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~ 550 (595)
-|+.+.+|. .|+||+. |..+++.+. |-.|..|||+|+|||+.+|-
T Consensus 318 vFe~~~~~~g~~i~~GGR-------------------------YD~L~~~fG-~~~pAvGFaiglerL~~~l~ 364 (373)
T 3rac_A 318 VFEMFAPGVGAPIAQGGR-------------------------YDELLAQFG-AGAPAVGFAFEVERVMAVLE 364 (373)
T ss_dssp EEEEECTTCSSCSEEEEE-------------------------CTTTTGGGT-CCCCCEEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCCeEeeccc-------------------------ccHHHHhhC-CCCCeEEEEEEHHHHHHHHH
Confidence 478888764 7888876 222344442 24689999999999998874
No 100
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=73.67 E-value=7.8 Score=32.67 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=50.2
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEEEe-------CC-----eeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDLRD-------YT-----GLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~LrD-------~~-----g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
..|.+.|++.+ +|-. | .++=+.|-- +. ..++||+-.+ ..+ +..|+.|+-|.|+|.+..
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk---~Ae-~~~l~KG~~v~veGrL~~ 83 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGR---QAE-EWQYRQGDCATVEGFLAQ 83 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHH---HHH-HSTTCTTCEEEEEEEEEE
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhH---Hhh-hhccCCCCEEEEEEEEEE
Confidence 56888999875 4543 4 233222221 11 1266776544 334 566999999999999998
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEee
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKILN 103 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vls 103 (595)
+.- +...+.|++++++.+.
T Consensus 84 rs~-------~~~~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 84 KSR-------RSLMPMLRIQNIKEYK 102 (103)
T ss_dssp SSS-------SCCCEEEEEEEEEECC
T ss_pred Ccc-------CCccEEEEEEEEEEcC
Confidence 743 2337999999998763
No 101
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=70.53 E-value=11 Score=31.72 Aligned_cols=53 Identities=11% Similarity=0.297 Sum_probs=34.4
Q ss_pred EEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeec
Q psy3762 45 VQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 45 lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~ 104 (595)
++|++-....+ ...+.|+.|+.|.|+|.+..+ .. .+. .+ ..||++++++.|+.
T Consensus 50 ~~vv~~g~~Ae--~~~~~l~KG~~V~V~G~L~~~-~~-~~G--~~-r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQ--AITHSITVGSRITVQGFISCH-KA-KNG--LS-KMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTH--HHHTTCCTTCEEEEEEEEEC-------------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHHH--HHHhhCCCCCEEEEEEEEEec-cC-CCC--CE-EEEEEEEEEEECcC
Confidence 88887765432 224569999999999999986 21 111 11 28999999999864
No 102
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=69.76 E-value=1.2 Score=47.81 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=32.3
Q ss_pred eeeEEec-CE--EEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCC-CCCccceeccHHHHHHHHcC
Q psy3762 480 AYDLIIN-GW--EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYG-APPHGGIAFGLDRLITIMTG 551 (595)
Q Consensus 480 ~fDl~~~-G~--Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G-~PPh~G~glGlDRLvm~l~g 551 (595)
-|+.+.+ |. -|+||+. |..+++.+.-. ..|..|||+|+|||+.+|-.
T Consensus 301 vFE~~~~~g~~~~I~~GGR-------------------------YD~Lv~~fg~~~~~PavGFaig~eRl~~~l~~ 351 (456)
T 3lc0_A 301 VFEGFDREGKFRALCGGGR-------------------------YDNLLTTYGSPTPIPCAGFGFGDCVIVELLQE 351 (456)
T ss_dssp EEEEEETTSCSSCSEEEEE-------------------------CSSHHHHTTCSSCCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCcceEeeccc-------------------------HHHHHHHhCCCCCCCEEEEEeEHHHHHHHHHh
Confidence 4677764 32 6888876 33355554322 25899999999999998854
No 103
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=67.64 E-value=33 Score=30.85 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=49.9
Q ss_pred EEEEEEEEEe---Eecc--C-CeEEEEE-EeC------------CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 17 VISLCGWVHR---KRNH--G-GIIFIDL-RDY------------TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 17 ~V~i~GwV~~---~R~~--g-~l~Fi~L-rD~------------~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
.|+|.|+|.+ +|.. | .++-+.| .+. +..+.|++-....+ ...+.|+.|+.|.|+|.++.
T Consensus 18 ~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~VeGrL~~ 95 (153)
T 1z9f_A 18 KIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAE--FARTYLTKGRLVLVEGEMRM 95 (153)
T ss_dssp CEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHH--HHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHH--HHHhhCCCCCEEEEEEEEEe
Confidence 4889999866 4543 4 2332233 122 22466776543222 23355999999999999988
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
+.-...+. .+...+||.|++|++|+..
T Consensus 96 ~~~~dkdG-~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 96 RRWETPTG-EKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EC--------CCCEEEEEEEEEEECC--
T ss_pred ceEECCCC-CEEEEEEEEEEEEEEccCC
Confidence 64221111 1234589999999999754
No 104
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=67.30 E-value=37 Score=30.39 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=49.8
Q ss_pred CEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEE
Q psy3762 16 QVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEIL 95 (595)
Q Consensus 16 ~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~ 95 (595)
+.|++.|-|-.. ..|. +.|+|++|.+-+.--.+.+. --..++.|.+|-|.|.+... +.+-.|+
T Consensus 59 s~VWmQG~VV~~-~~g~---~~LdDgTG~~~v~g~~~vp~---g~p~l~~G~YVMV~G~v~~~----------s~eP~i~ 121 (150)
T 3mxn_B 59 AAVWMQGRVVMA-DRGE---ARLRDPSGDFSVRGLERVPR---GRPCLVPGKYVMVMGVVQAC----------SPEPCLQ 121 (150)
T ss_dssp SEEEEEEEEEEE-ETTE---EEEEETTEEEEEECGGGSCC---CSCCCSTTCEEEEEEEEEEC----------SSSCEEE
T ss_pred EEEEEEeEEEEe-CCCe---EEEECCCceEEEeeccccCC---CCcccCCCCEEEEEEEEEec----------CCCceEE
Confidence 569999999886 4453 56999999866532222110 01237899999999999863 3356788
Q ss_pred EeeEEEeec
Q psy3762 96 CRELKILNS 104 (595)
Q Consensus 96 v~~i~vls~ 104 (595)
+-++.=||.
T Consensus 122 AvKm~DLS~ 130 (150)
T 3mxn_B 122 AVKMTDLSD 130 (150)
T ss_dssp EEEEEECCS
T ss_pred EEEeeeCCC
Confidence 888777775
No 105
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=66.49 E-value=50 Score=38.97 Aligned_cols=90 Identities=14% Similarity=0.301 Sum_probs=61.6
Q ss_pred cccccccccCCCEEEEEEEEEeE--ec--cCC-eEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRK--RN--HGG-IIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~--R~--~g~-l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
.+.++.. ....|+|.|.|-.+ |. .|+ +.-+.+.|.++.+.|..-.+..+..+....|+.|+.|.|.|.+....
T Consensus 9 ~~~~~~~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~ 86 (1041)
T 3f2b_A 9 RLETIVE--EERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDT 86 (1041)
T ss_dssp CGGGCCS--CEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEET
T ss_pred cHHHhhc--ccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEecc
Confidence 4555543 23569999999654 32 354 56678999999877754333333445667899999999999998752
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeec
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~ 104 (595)
-.+++.+.+.+|..+.+
T Consensus 87 --------~~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 87 --------FVRDLVIIANDLNEIAA 103 (1041)
T ss_dssp --------TTTEEEEEEEEEEEECC
T ss_pred --------CCcceEEEeeeeEEecc
Confidence 24567788877766654
No 106
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=66.27 E-value=64 Score=28.80 Aligned_cols=85 Identities=8% Similarity=0.035 Sum_probs=58.2
Q ss_pred cccccccccCCCEEEEEEEEEeEe----------c---------cCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCC
Q psy3762 5 YCGNITEKLLDQVISLCGWVHRKR----------N---------HGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRN 65 (595)
Q Consensus 5 ~~~~l~~~~~g~~V~i~GwV~~~R----------~---------~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~ 65 (595)
.|.+|....- .|.|.|+|-.+- . .+.++=+.|-|.+|.|-+++=.+. +..+..
T Consensus 18 kI~dL~pg~~--~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~------~~~l~~ 89 (145)
T 1wjj_A 18 KVEQLKPGTT--GHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQ------VDLMKP 89 (145)
T ss_dssp CSTTCCTTCC--CEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTH------HHHTCT
T ss_pred EHHHcCCCCC--ceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCC------cCcCCC
Confidence 3677765433 388888885542 1 335888899999999988887653 234789
Q ss_pred CcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecCC
Q psy3762 66 EFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 66 es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
|++|.+++-...- -.|.++|.+.+..-+.+..
T Consensus 90 Gd~v~i~na~v~~---------~~G~~~L~vgk~g~Ie~~~ 121 (145)
T 1wjj_A 90 GATVILRNSRIDM---------FKGTMRLGVDKWGRIEATG 121 (145)
T ss_dssp TCEEEEEEEEEEE---------ETTEEEEEECTTCCBCCCS
T ss_pred CCEEEEeccEEEe---------ECCEEEEEECCCEEEEECC
Confidence 9999999643321 3578999997665555443
No 107
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=62.78 E-value=7 Score=44.94 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhCCCeeccCceeecCCC-----CCCccccccccCCCCCeeeccCChHHHHHHHHh----hCC--CceEEE
Q psy3762 145 VTMEVRKFLDSKKFIEIETPILSKSTP-----EGARDYLVPSRINPGEFFALPQSPQLFKQLLMV----ANF--DRYYQI 213 (595)
Q Consensus 145 i~~~iR~ff~~~gF~EV~TPiL~~~~~-----~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~----~g~--~rvf~i 213 (595)
..+.+|+.|...||.|+-|-.+++... ............ ..+.-.|++|---.+=..++ .+. -|+|||
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPi-s~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEi 572 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPI-SVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFES 572 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCS-CSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCC-chhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEe
Confidence 456789999999999999999986310 011111111111 12223466665433322222 233 489999
Q ss_pred ecceecCCCCCCCCc-ccccccccccc-------------CCHHHHHHHHHHHHHHH
Q psy3762 214 TKCFRDEDLRSDRQP-EFTQIDCETSF-------------MNEEEIRNLFEEMIRVI 256 (595)
Q Consensus 214 ~~~FR~E~~~~~r~~-EFt~lE~e~~~-------------~~~~dl~~~~E~ll~~l 256 (595)
|+||+.++... ..+ |..++-+-+++ +|+.++...+|.++..+
T Consensus 573 G~Vf~~~~~~~-~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 573 GLRFVPDTQAP-LGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEEECTTSS-TTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eeEEecCCCcc-cCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 99998754321 233 55555443332 46889888888877654
No 108
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=60.50 E-value=41 Score=33.77 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=51.6
Q ss_pred EEEEEEEEEe---Eecc--C-CeEEEEEE------eC-------CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 17 VISLCGWVHR---KRNH--G-GIIFIDLR------DY-------TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 17 ~V~i~GwV~~---~R~~--g-~l~Fi~Lr------D~-------~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
.|+|.|+|.+ +|.. | .++-+.|- |. +..++|++-... .+.+.+|+.|+.|.|+|.+..
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~---Ae~~~~l~KG~~V~V~GrL~~ 207 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDL---AENMKELRKGDPVMIMGRLVN 207 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHH---HHHHTTCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHH---HHHHHhcCCCCEEEEEEEEee
Confidence 4889999976 5643 4 23322331 11 224778776653 233333999999999999987
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEeec
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKILNS 104 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vls~ 104 (595)
+.-...+. .+...+||.+++|++|..
T Consensus 208 ~~y~dkdG-~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 208 EGWTDKDG-NKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EECC-------CEEEEEEEEEEEECCC
T ss_pred eeEECCCC-cEEEEEEEEEEEEEEecc
Confidence 64221111 122358999999999975
No 109
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=59.30 E-value=7.3 Score=41.80 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=22.2
Q ss_pred HHHHHHHhhCCCCCccceeccHHHHHHHHcCC
Q psy3762 521 FGFLLNSLKYGAPPHGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 521 ~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~ 552 (595)
|..|++.+.----|-.||++|+|||+.+|...
T Consensus 315 YD~Lv~~~g~~~~PavGfa~gleRl~~~l~~~ 346 (467)
T 4e51_A 315 YDPLIEQLGGKPTAACGWAMGIERILELLKEE 346 (467)
T ss_dssp CTHHHHHTTSSCCCEEEEEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCceeehHHHHHHHHHHHhc
Confidence 44455555321456779999999999998753
No 110
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=57.18 E-value=44 Score=29.54 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=53.5
Q ss_pred ccCCCEEEEEEEEE--eE-ecc-C-CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCC
Q psy3762 12 KLLDQVISLCGWVH--RK-RNH-G-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTN 86 (595)
Q Consensus 12 ~~~g~~V~i~GwV~--~~-R~~-g-~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~ 86 (595)
...|+.|+|-|.|. ++ |.. + .+.| .|.|+...+.|+.....|+ ..+.|.-|-|+|++...
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilPD------lFrEGqgVVa~G~l~~~-------- 89 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAEGSVDVSYEGILPD------LFREGQGVVVQGELEKG-------- 89 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSSCEEEEEEESCCCT------TCCTTSEEEEEEEECSS--------
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCCcEEEEEECCCCCc------cccCCCeEEEEEEECCC--------
Confidence 34689999999997 34 432 3 4776 6789988999999876653 35779999999998532
Q ss_pred cCCccEEEEEeeEEEeecCC
Q psy3762 87 LISGNIEILCRELKILNSSI 106 (595)
Q Consensus 87 ~~~g~iEl~v~~i~vls~~~ 106 (595)
| .+.+++ ||.+|+
T Consensus 90 ---g--~F~A~e--VLAKhd 102 (136)
T 1sr3_A 90 ---N--HILAKE--VLAKHD 102 (136)
T ss_dssp ---S--EEEESS--CBCCSC
T ss_pred ---C--eEEEEE--EEecCC
Confidence 2 255555 888886
No 111
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=56.79 E-value=16 Score=33.08 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=51.6
Q ss_pred EEEEEEEEEe---Eecc--C-CeEEEEE------EeC--------CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEE
Q psy3762 17 VISLCGWVHR---KRNH--G-GIIFIDL------RDY--------TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVC 76 (595)
Q Consensus 17 ~V~i~GwV~~---~R~~--g-~l~Fi~L------rD~--------~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~ 76 (595)
.|+|.|+|.+ +|.. | .++-+.| +|. +..+.|++-....+ ...+.|+.|+.|.|+|.+.
T Consensus 10 ~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae--~~~~~l~KG~~V~VeG~L~ 87 (158)
T 3tqy_A 10 KVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAE--IVGEYLRKGSKIYIEGSLR 87 (158)
T ss_dssp EEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHH--HHHHHCCTTCEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHH--HHHhhcCCCCEEEEEEEEE
Confidence 5889999865 5543 4 2332222 121 22477777654322 2234599999999999998
Q ss_pred eCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 77 SRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 77 ~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+.-...+. .+...+||.|++|++|...
T Consensus 88 ~~~~~dkdG-~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 88 TRKWQDKNG-VDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEECSSS-CEEEEEEEEEEEEEECC--
T ss_pred eeeEECCCC-CEEEEEEEEEeEEEEccCC
Confidence 763211111 1223589999999999854
No 112
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=55.17 E-value=17 Score=30.94 Aligned_cols=86 Identities=13% Similarity=0.229 Sum_probs=50.6
Q ss_pred EEEEEEEEEe---Eecc--C-CeEEEEE-EeC----------CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 17 VISLCGWVHR---KRNH--G-GIIFIDL-RDY----------TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 17 ~V~i~GwV~~---~R~~--g-~l~Fi~L-rD~----------~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
.|+|.|+|.+ +|.. | .++-+.| .+. +..++|++-....+ ...+.|+.|+.|.|+|.+..+.
T Consensus 7 ~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~l~~~~ 84 (116)
T 3vdy_A 7 QVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAE--NTALYCQKGSLVGVSGRIQTRS 84 (116)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHH--HHHHHCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHH--HHHHhCCCCCEEEEEEEEEeeE
Confidence 4888899865 4543 4 2442223 221 12477777654222 2334599999999999998763
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
-...+. .+...+||.|++|++|++.
T Consensus 85 ~~d~dG-~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 85 YENEEG-VNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EC-----CCEEEEEEEEEEEEECC--
T ss_pred EECCCC-CEEEEEEEEEEEEEEccCC
Confidence 211111 1223589999999999764
No 113
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=54.84 E-value=8.6 Score=40.35 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=15.8
Q ss_pred CccceeccHHHHHHHHcCC
Q psy3762 534 PHGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 534 Ph~G~glGlDRLvm~l~g~ 552 (595)
|.-|||||+|||+..+...
T Consensus 301 pa~Gf~igieRl~~~l~e~ 319 (421)
T 1h4v_B 301 PGVGFAFGVERVALALEAE 319 (421)
T ss_pred CeEEEeecHHHHHHHHHhc
Confidence 4568999999999998753
No 114
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=53.58 E-value=1e+02 Score=26.00 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=47.8
Q ss_pred CCEEEEEEEEEe---Eec--cC-CeE-EEEEEe----CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe-CCCCC
Q psy3762 15 DQVISLCGWVHR---KRN--HG-GII-FIDLRD----YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS-RPNKT 82 (595)
Q Consensus 15 g~~V~i~GwV~~---~R~--~g-~l~-Fi~LrD----~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~-~~~~~ 82 (595)
...|.|.|+|.+ .|- .| +++ |-.-.+ ....+.|++-....+ ...+..|+-|.|+|.++. +.-..
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe----~~~~~kG~~v~v~G~lrsy~~~~~ 86 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFE----GMNLEVGTRVKIEGQLRSYNRKSP 86 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGST----TCCCCTTCEEEEEEEEEEEECC--
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhh----HHhhcCCCEEEEEEEEEecceEEC
Confidence 445899999854 222 34 222 222222 233688888755432 223568999999999964 21111
Q ss_pred CCCCcCCccEEEEEeeEEEee
Q psy3762 83 NNTNLISGNIEILCRELKILN 103 (595)
Q Consensus 83 ~~~~~~~g~iEl~v~~i~vls 103 (595)
.+. .+.--+||.|++++.|+
T Consensus 87 ~dG-~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 87 EEG-KNKLILTVFARDISVVP 106 (107)
T ss_dssp -------EEEEEEEEEEEEEC
T ss_pred CCC-CEEEEEEEEEEEEEEcc
Confidence 111 12335899999999886
No 115
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=52.95 E-value=62 Score=28.62 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=52.9
Q ss_pred ccCCCEEEEEEEEE--eE-ec-cC-CeEEEEEEe-CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCC
Q psy3762 12 KLLDQVISLCGWVH--RK-RN-HG-GIIFIDLRD-YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNT 85 (595)
Q Consensus 12 ~~~g~~V~i~GwV~--~~-R~-~g-~l~Fi~LrD-~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~ 85 (595)
...|+.|+|-|.|. ++ |. .+ .+.| .|.| +...+.|+.....|+ ..+.|.-|-|+|++...
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~v~V~Y~GilPD------lFrEGqgVVa~G~l~~~------- 94 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLGGEILVTYDDLLPD------LFREGQGIVAQGVLGED------- 94 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTCCCEEEEECSCCTT------SCCSSSEEEEEEEECST-------
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCCCEEEEEECCCCCc------cccCCCeEEEEEEECCC-------
Confidence 35789999999995 34 43 24 5777 6788 888999999877653 35779999999998532
Q ss_pred CcCCccEEEEEeeEEEeecCC
Q psy3762 86 NLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 86 ~~~~g~iEl~v~~i~vls~~~ 106 (595)
| .+++++ ||.+|+
T Consensus 95 ----g--~F~A~e--VLaKhd 107 (136)
T 1j6q_A 95 ----G--KLAATE--VLAKHD 107 (136)
T ss_dssp ----T--SEEEEE--EECCC-
T ss_pred ----C--eEEEEE--EEecCC
Confidence 2 155655 888886
No 116
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=52.76 E-value=38 Score=28.33 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=32.7
Q ss_pred EEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEE
Q psy3762 45 VQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKI 101 (595)
Q Consensus 45 lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~v 101 (595)
++||+-.+. .+.+.++..|+-|.|+|.+..+.- ....+=++++.++.
T Consensus 50 i~vv~wGk~---AE~~~~~~kGs~V~VeGrL~trs~-------~s~~lvlhi~~~~~ 96 (101)
T 3en2_A 50 IEALGAGKM---ASVLDRIAPGTVLECVGFLARKHR-------SSKALVFHISGLEH 96 (101)
T ss_dssp EEEEEETHH---HHHHTTSCTTCEEEEEEEEEECC-----------CEEEEEEEEEE
T ss_pred EEEEEEhHH---HHHHhhcCCCCEEEEEEEEEeCcC-------CCCeeEEEEecccc
Confidence 888887653 344556899999999999997642 34457777777653
No 117
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=52.46 E-value=30 Score=33.96 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=52.7
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEE-Ee---------CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDL-RD---------YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRP 79 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~L-rD---------~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 79 (595)
..|+|.|+|.+ +|.. | .++-+.| .+ .+..++|++-.... +.+..|+.|+.|.|+|.+..+.
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~A---e~~~~l~KG~~V~V~G~l~~~~ 205 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELA---EWASELRKGDGLLVIGRLVNDS 205 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHH---HHHTTCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHH---HHhhhcCCCCEEEEEEEEEeeE
Confidence 46889999976 4543 4 2343333 22 22358888765422 2223899999999999998763
Q ss_pred CCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 80 NKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 80 ~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
-...+. .+...+||.|++|++|+..
T Consensus 206 ~~~~dG-~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 206 WTSSSG-ERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp EECTTS-CEEEEEEEEEEEEECCCC-
T ss_pred EECCCC-CEEEEEEEEEEEEEECccc
Confidence 211111 1123589999999999753
No 118
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=52.41 E-value=18 Score=31.81 Aligned_cols=59 Identities=7% Similarity=0.077 Sum_probs=38.0
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.++|++-....+ ...+.|+.||.|.|+|.+..+.-...+. .+...+||.|++|+.|...
T Consensus 50 ~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~L~~~~~~dkdG-~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 50 FIDARLFGRTAE--IANQYLSKGSSVLIEGRLTYESWMDQTG-KKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEEHHHHH--HHHHHCCTTCEEEEEEEEEEEEEECTTS-CEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEEcHHHH--HHHHhCCCCCEEEEEEEEEeeeEECCCC-CEEEEEEEEEEEEEEccCC
Confidence 477776544222 2234599999999999998763211111 1123589999999999753
No 119
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=50.76 E-value=5.9 Score=41.57 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=15.1
Q ss_pred CCccceeccHHHHHHHHc
Q psy3762 533 PPHGGIAFGLDRLITIMT 550 (595)
Q Consensus 533 PPh~G~glGlDRLvm~l~ 550 (595)
-|.-|||+|+|||+.++-
T Consensus 301 ~P~vg~~igveRl~~~le 318 (420)
T 1qe0_A 301 ETGIGFALSIERLLLALE 318 (420)
T ss_dssp CEEEEEEEEHHHHHHHHH
T ss_pred CCEEEEEecHHHHHHHHH
Confidence 355799999999999873
No 120
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=48.69 E-value=49 Score=28.75 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=37.4
Q ss_pred eEEEEECCC-cHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 44 LVQIVFDPN-DIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 44 ~lQvv~~~~-~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+.|++-.+ ..+ ...+.|+.|+.|.|+|.+..+.-...+. .+....||.|++|++|++.
T Consensus 68 w~~v~~wg~~~Ae--~~~~~l~KG~~V~V~G~L~~~~~~d~dG-~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 68 WHRISVFRPGLRD--VAYQYVKKGSRIYLEGKIDYGEYMDKNN-VRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEEECSTTHHH--HHHHHCCTTCEEEEEEEEECCCEESSSS-EECCCEEEEEEEEECC---
T ss_pred EEEEEEEchHHHH--HHHhhCCCCCEEEEEEEEEeeEEECCCC-CEEEEEEEEEEEEEEccCC
Confidence 367776652 322 2235599999999999998764211111 1234689999999999864
No 121
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=48.30 E-value=11 Score=39.55 Aligned_cols=18 Identities=39% Similarity=0.811 Sum_probs=15.2
Q ss_pred CccceeccHHHHHHHHcC
Q psy3762 534 PHGGIAFGLDRLITIMTG 551 (595)
Q Consensus 534 Ph~G~glGlDRLvm~l~g 551 (595)
|..|||||+|||+..+..
T Consensus 300 pavGf~igveRl~~~l~e 317 (423)
T 1htt_A 300 PAVGFAMGLERLVLLVQA 317 (423)
T ss_dssp CEEEEEEEHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHh
Confidence 445899999999998864
No 122
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=45.83 E-value=37 Score=29.16 Aligned_cols=86 Identities=28% Similarity=0.291 Sum_probs=51.1
Q ss_pred EEEEEEEEEe---Eec--cC-CeEEEEE------Ee---C-----CeeEEEEECC-CcHHHHHHHhcCCCCcEEEEEeEE
Q psy3762 17 VISLCGWVHR---KRN--HG-GIIFIDL------RD---Y-----TGLVQIVFDP-NDIKIYKIAKIIRNEFCLQIIGKV 75 (595)
Q Consensus 17 ~V~i~GwV~~---~R~--~g-~l~Fi~L------rD---~-----~g~lQvv~~~-~~~~~~~~~~~l~~es~V~V~G~v 75 (595)
.|+|.|+|.+ +|. .| .++-+.| +| | +..+.|++=. ...+ ...+.|+.|+.|.|+|.+
T Consensus 8 ~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae--~~~~~l~KG~~V~V~G~L 85 (124)
T 3ulp_A 8 KIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVD--LIDKYLRKGRRVYVQGSL 85 (124)
T ss_dssp EEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHH--HHHHHCCTTCEEEEEEEE
T ss_pred EEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHH--HHHhhcCCCCEEEEEEEE
Confidence 5888888865 454 24 2333333 11 1 2248888776 4322 223459999999999999
Q ss_pred EeCCCCCC--CCCcCCccEEEEEe----eEEEeecC
Q psy3762 76 CSRPNKTN--NTNLISGNIEILCR----ELKILNSS 105 (595)
Q Consensus 76 ~~~~~~~~--~~~~~~g~iEl~v~----~i~vls~~ 105 (595)
..+.-... +. .+....||.|+ ++++|+.-
T Consensus 86 ~~~~~~d~~~dG-~~~~~~ev~a~~~g~~i~~l~~k 120 (124)
T 3ulp_A 86 HTRKWHTNDMNS-QPKQITEIILSYNKGDLIFLDDK 120 (124)
T ss_dssp EEEEECC----C-CCEEEEEEEECTTTCEEEECC--
T ss_pred EeEEEeCCCCCC-CEEEEEEEEEEcCCCcEEEecCc
Confidence 87632211 11 12346899998 89988753
No 123
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=44.79 E-value=1.2e+02 Score=25.32 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=37.2
Q ss_pred CCEEEEEEEEEeEecc--C--C-eEEEEEEeCCe-----eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCC
Q psy3762 15 DQVISLCGWVHRKRNH--G--G-IIFIDLRDYTG-----LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPN 80 (595)
Q Consensus 15 g~~V~i~GwV~~~R~~--g--~-l~Fi~LrD~~g-----~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 80 (595)
|..+++-|+|+.+..- + + .-|....|+.+ .+-|-+-.+....-..-..|+.|++|.|+|+++..|.
T Consensus 3 ~sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~ 78 (105)
T 4dka_C 3 GSNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRH 78 (105)
T ss_dssp -CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCE
T ss_pred ccceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeec
Confidence 6678999999999761 2 2 33555555543 1222222322101112356999999999999998763
No 124
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=42.02 E-value=1.3e+02 Score=25.90 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=44.2
Q ss_pred EEEEEeCCeeEEE-EECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 35 FIDLRDYTGLVQI-VFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 35 Fi~LrD~~g~lQv-v~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
=+.|.||...+|. ++........+ -..|+.+++|.++=.....- +.+.--+.+-+++|+.++
T Consensus 46 Rl~lSDG~~~~~~~mLatqln~~v~-~g~l~~~sIirl~~y~~~~v--------~~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 46 RLLMSDGLNTLSSFMLATQLNPLVE-EEQLSSNCVCQIHRFIVNTL--------KDGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEEECSSEEEEEEEECGGGHHHHH-TTSSCTTCEEEEEEEEEEEC--------SSSCEEEEEEEEEEEECS
T ss_pred EEEEECcchheeeehhHHHHHHHHh-cCCccCCCEEEEEEEEEEEe--------cCCcEEEEEEeeEEeecc
Confidence 3789999999998 88765433222 24699999999986644321 114567889999999874
No 125
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=41.43 E-value=60 Score=28.57 Aligned_cols=83 Identities=13% Similarity=0.218 Sum_probs=51.2
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEEE-----eCC-------eeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDLR-----DYT-------GLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~Lr-----D~~-------g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
..|.|.|+|.+ +|.. | .++=+.|- +.. ..++||+-....+. ..+-|+.|+-|.|+|.+..
T Consensus 20 NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~--~~~yl~KGs~V~VeGrL~t 97 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQA--ITHSITVGSRITVQGFISC 97 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGG--GGTTCCTTCEEEEEEEEEE
T ss_pred eEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHH--HHHhcCCCCEEEEEEEEEE
Confidence 46888898864 5542 4 23322331 111 23788877654321 2345999999999999998
Q ss_pred CCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 78 RPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 78 ~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
+.. .+. ...+.+++++++.|+..
T Consensus 98 r~~--k~G---~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 98 HKA--KNG---LSKMVLHAEQIELIDSV 120 (134)
T ss_dssp ECT--TTT---SCEEEEEEEEEEETTSC
T ss_pred EEC--CCC---CEEEEEEEEEEEECcCC
Confidence 632 111 12567799999999753
No 126
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=40.89 E-value=53 Score=32.11 Aligned_cols=58 Identities=5% Similarity=0.079 Sum_probs=36.9
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.++|++-....+ ...+.|+.|+.|.|+|.+..+.-.. +. .+...+||.|++|.+|+..
T Consensus 53 ~~~v~~~g~~Ae--~~~~~l~KG~~V~V~G~L~~~~~~~-dG-~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 53 YHRVRLLGRQAE--MWGDLLEKGQLIFVEGRLEYRQWEK-DG-EKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEEETHHHH--HHTTTCCTTCEEEEEEEEEEC-----------CCEEEEEEEEEECCCC
T ss_pred EEEEEEEchHHH--HHHHhCCCCCEEEEEEEEEeeeEEe-CC-EEEEEEEEEEEEEEECcCC
Confidence 477777654222 2335699999999999998764321 11 1234589999999999753
No 127
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=40.63 E-value=14 Score=36.19 Aligned_cols=57 Identities=19% Similarity=0.357 Sum_probs=41.0
Q ss_pred cccceeeEEecCEEEeecccccCCHHHHHHHHHHc-CCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCC
Q psy3762 476 IFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL-NIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554 (595)
Q Consensus 476 ~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~-g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~ 554 (595)
.++..+++.+||+||.== .-|... |++- -|..+=+--|+|||.|.+-|.+|
T Consensus 134 AwGLGWEVWldGMEITQF-----------TYFQQvGGi~c-----------------~pv~~EITYGLERiamylQ~vd~ 185 (298)
T 1j5w_A 134 AWGVGWEVWLDGMEITQF-----------TYFQQIGGISL-----------------KDIPLEITYGLERIAMYLQGVDN 185 (298)
T ss_dssp EEEEEEEEEETTEEEEEE-----------EEEEEBTTBCC-----------------SSCCEEEEEEHHHHHHHHHTCSS
T ss_pred cccccceeeEcceeeehh-----------hhhhhcCCccc-----------------CccceeecccHHHHHHHHhCCCc
Confidence 468899999999999610 000000 1211 46677799999999999999999
Q ss_pred cccccc
Q psy3762 555 IRDVIA 560 (595)
Q Consensus 555 IRdvi~ 560 (595)
|-|..-
T Consensus 186 vydl~w 191 (298)
T 1j5w_A 186 VYEVQW 191 (298)
T ss_dssp GGGCEE
T ss_pred eecccc
Confidence 999764
No 128
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=39.47 E-value=16 Score=36.11 Aligned_cols=57 Identities=16% Similarity=0.377 Sum_probs=41.0
Q ss_pred cccceeeEEecCEEEeecccccCCHHHHHHHHHHc-CCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCC
Q psy3762 476 IFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVL-NIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554 (595)
Q Consensus 476 ~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~-g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~ 554 (595)
.++..+++.++|+||.== .-|... |++- -|..+=+--|+|||.|.+-|.+|
T Consensus 146 AWGLGWEVWldGMEVTQF-----------TYFQQvGGi~c-----------------~pv~~EITYGLERlamylQ~vd~ 197 (311)
T 3rf1_A 146 AWGLGWEVWLDGMEVTQF-----------TYFQQVGGIAV-----------------DLVSAEITYGLERIAMYLQNVDN 197 (311)
T ss_dssp EEEEEEEEEETTEEEEEE-----------EEEEEETTEEC-----------------SSCCEEEEEEHHHHHHHHTTCSS
T ss_pred ccccceEEEEcCeeEeee-----------eeeeeeCCccc-----------------cccceeeehhHHHHHHHHhCCCe
Confidence 568899999999999610 000000 1111 46677799999999999999999
Q ss_pred cccccc
Q psy3762 555 IRDVIA 560 (595)
Q Consensus 555 IRdvi~ 560 (595)
|-|..-
T Consensus 198 vyDl~w 203 (311)
T 3rf1_A 198 VYDIVW 203 (311)
T ss_dssp GGGSEE
T ss_pred eeeccc
Confidence 999764
No 129
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=37.62 E-value=10 Score=40.52 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=16.4
Q ss_pred CCC-ccceeccHHHHHHHHcC
Q psy3762 532 APP-HGGIAFGLDRLITIMTG 551 (595)
Q Consensus 532 ~PP-h~G~glGlDRLvm~l~g 551 (595)
.|+ .+|||||+|||+..+..
T Consensus 329 ~p~~~~gfgiGveRli~al~e 349 (458)
T 2i4l_A 329 APIHGGSYGVGVSRLLGAIIE 349 (458)
T ss_dssp EECEEEEEEEEHHHHHHHHHH
T ss_pred eceEEeeecccHHHHHHHHHH
Confidence 466 45999999999998754
No 130
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=35.40 E-value=13 Score=39.39 Aligned_cols=19 Identities=26% Similarity=0.683 Sum_probs=16.1
Q ss_pred CCCccceeccHHHHHHHHc
Q psy3762 532 APPHGGIAFGLDRLITIMT 550 (595)
Q Consensus 532 ~PPh~G~glGlDRLvm~l~ 550 (595)
.-|..|||+|+|||++++.
T Consensus 334 ~~pavGfaigieRl~~~l~ 352 (464)
T 4g84_A 334 KVPCVGLSIGVERIFSIVE 352 (464)
T ss_dssp CCCEEEEEECHHHHHHHHH
T ss_pred CCCCccccccHHHHHHHHH
Confidence 4478899999999999884
No 131
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=34.57 E-value=72 Score=33.93 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHh---hCCCceEEEecceec
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMV---ANFDRYYQITKCFRD 219 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~---~g~~rvf~i~~~FR~ 219 (595)
++|-+.+-+||.++|.+.|..--|.+...+ ..++..-++..++...+- ....|+-..-+|.|+
T Consensus 6 ~eiR~~Fl~FF~~kgH~~vpSsslvp~~Dp--------------tLLftnAGM~~FKp~flG~~~p~~~r~t~sQkCiRa 71 (465)
T 1yfs_A 6 HEIRELFLSFFEKKGHTRVKSAPLVPENDP--------------TLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRV 71 (465)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCCSSCTTCT--------------TCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECE
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcccCCCC--------------CcceeccchhhhhHHhcCCCCCCCCceecccccccc
Confidence 456667778999999999886666542110 111122223333333321 124688999999994
Q ss_pred -------CCCC-CCCCc-cccccccccccCCH--HHHHHHHHHHHHHH
Q psy3762 220 -------EDLR-SDRQP-EFTQIDCETSFMNE--EEIRNLFEEMIRVI 256 (595)
Q Consensus 220 -------E~~~-~~r~~-EFt~lE~e~~~~~~--~dl~~~~E~ll~~l 256 (595)
|+++ +.||+ =|-||- -.+|.+| ++.+..+-+++-..
T Consensus 72 g~~hNDlenVG~t~rHhTfFEMLG-NfSFGDYFK~eAI~~AwE~LT~~ 118 (465)
T 1yfs_A 72 SGKHNDLEQVGYTSRHHTFFEMLG-NFSFGDYFKKEAIEYAWEFVTEV 118 (465)
T ss_dssp ETTEECGGGBTTBSSCCSEEEEEE-EEESSSCCHHHHHHHHHHHHHHT
T ss_pred CCCcccHhhcCCCCCccchheecc-ccchhhhhHHHHHHHHHHHHHhh
Confidence 3333 56777 555653 4578886 88998888888554
No 132
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=33.62 E-value=45 Score=29.61 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=53.3
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEEE-e-------------CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEE
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDLR-D-------------YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKV 75 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~Lr-D-------------~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v 75 (595)
..|+|.|+|.+ +|.. | .++-+.|- + .+..+.|++-....+ ...+.|+.|+.|.|+|.+
T Consensus 6 N~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~L 83 (145)
T 1qvc_A 6 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE--VASEYLRKGSQVYIEGQL 83 (145)
T ss_dssp EEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHH--HHHHHCCTTCEEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHH--HHHHhcCCCCEEEEEEEE
Confidence 35889999965 5543 4 34544442 1 123588887665322 233459999999999999
Q ss_pred EeCCCCCCCCCcCCccEEE---EEeeEEEeecC
Q psy3762 76 CSRPNKTNNTNLISGNIEI---LCRELKILNSS 105 (595)
Q Consensus 76 ~~~~~~~~~~~~~~g~iEl---~v~~i~vls~~ 105 (595)
..+.-...+. .+...+|| .+++|++|...
T Consensus 84 ~~~~~~d~dG-~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 84 RTRKWTDQSG-QDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp EEEEECSSSS-CEEEEEEEECTTCEEEECCCCS
T ss_pred EeeEEECCCC-cEEEEEEEeeeEeCEEEEccCC
Confidence 8764211111 11234688 78899888754
No 133
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=33.57 E-value=1.2e+02 Score=25.45 Aligned_cols=81 Identities=9% Similarity=-0.058 Sum_probs=47.2
Q ss_pred EEEEEEEEEe---Eecc--CC--eEEEEEE-e------CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCC
Q psy3762 17 VISLCGWVHR---KRNH--GG--IIFIDLR-D------YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKT 82 (595)
Q Consensus 17 ~V~i~GwV~~---~R~~--g~--l~Fi~Lr-D------~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 82 (595)
.|.+.|+|.+ +|.. |+ ++=+.|- + .+..+.|++=.+..+. ..+-|+.||-|.|+|.++.+.-..
T Consensus 13 ~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~--~~~yl~KG~~V~VeGrL~~r~y~~ 90 (108)
T 3koj_A 13 SCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQE--LQDRCRLNDEVVLEGRLRINSLLK 90 (108)
T ss_dssp EEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHH--HHHHCCTTCEEEEEEEEEEEC---
T ss_pred eEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHH--HHHhCCCCCEEEEEEEEEeeeEEC
Confidence 5889999964 4542 42 3322221 1 2335888876653321 235599999999999998764322
Q ss_pred CCCCcCCccEEEEEeeEE
Q psy3762 83 NNTNLISGNIEILCRELK 100 (595)
Q Consensus 83 ~~~~~~~g~iEl~v~~i~ 100 (595)
.+. .+....||.|++|.
T Consensus 91 kdG-~kr~~tEVva~~i~ 107 (108)
T 3koj_A 91 PDG-NREKQTELTVTRVH 107 (108)
T ss_dssp ------CCEEEEEEEEEE
T ss_pred CCC-CEEEEEEEEEEEEE
Confidence 111 13346899998875
No 134
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=32.99 E-value=17 Score=38.30 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=16.5
Q ss_pred CCccceeccHHHHHHHHcCC
Q psy3762 533 PPHGGIAFGLDRLITIMTGS 552 (595)
Q Consensus 533 PPh~G~glGlDRLvm~l~g~ 552 (595)
.|..|||||+|||+.++...
T Consensus 305 ~pa~Gf~igveRl~~~l~e~ 324 (434)
T 1wu7_A 305 VPAVGFGMGDAVISLLLKRE 324 (434)
T ss_dssp CCEEEEEEEHHHHHHHHHHT
T ss_pred CCeEEEEEcHHHHHHHHHhc
Confidence 35678999999999998754
No 135
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=32.97 E-value=19 Score=38.95 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=21.9
Q ss_pred HHHHHHHhhCC--CCCccceeccHHHHHHHHc
Q psy3762 521 FGFLLNSLKYG--APPHGGIAFGLDRLITIMT 550 (595)
Q Consensus 521 ~~~yL~al~~G--~PPh~G~glGlDRLvm~l~ 550 (595)
|..++..+..| .-|..|||+|+|||++++-
T Consensus 374 YD~Lv~~f~~~G~~~pavGfa~gierl~~~le 405 (517)
T 4g85_A 374 YDGLVGMFDPKGRKVPCVGLSIGVERIFSIVE 405 (517)
T ss_dssp CHHHHHTTSSSCCCCCEEEEEECHHHHHHHHH
T ss_pred hhHHHHHhccCCCCCCcccccchHHHHHHHHH
Confidence 44556665433 4578899999999999885
No 136
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=32.53 E-value=9.8 Score=43.16 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=26.1
Q ss_pred CccceeccHHHHHHHHcCCCCccccccCCC
Q psy3762 534 PHGGIAFGLDRLITIMTGSKSIRDVIAFPK 563 (595)
Q Consensus 534 Ph~G~glGlDRLvm~l~g~~~IRdvi~FPr 563 (595)
+|--.|+|||||+|++-|.+|+=|+ .|+-
T Consensus 239 ~~iDtG~GlER~~~~lqg~~s~yd~-~f~p 267 (739)
T 2ztg_A 239 YIVDTGYGLERFVWASKGTPTVYDA-IFPE 267 (739)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HCHH
T ss_pred CeEecCcCHHHHHHHHcCCCchHHh-hHHH
Confidence 6788999999999999999999999 6653
No 137
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=32.12 E-value=70 Score=31.26 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=21.2
Q ss_pred cccccccccccCCCEEEEEEEEEeE
Q psy3762 3 THYCGNITEKLLDQVISLCGWVHRK 27 (595)
Q Consensus 3 t~~~~~l~~~~~g~~V~i~GwV~~~ 27 (595)
+..+.+|+.+++|+-|+|.|-|.+.
T Consensus 106 ~~~iR~l~~~~igkLV~v~GiV~r~ 130 (268)
T 2vl6_A 106 VIELRKIRSTDIGKLITIDGILVKV 130 (268)
T ss_dssp EECGGGCCGGGTTSEEEEEEEEEEE
T ss_pred CCccccCChhHCCCeEEEEEEEEEc
Confidence 3467889999999999999998774
No 138
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=31.96 E-value=14 Score=40.51 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=15.8
Q ss_pred CCcc-ceeccHHHHHHHHcC
Q psy3762 533 PPHG-GIAFGLDRLITIMTG 551 (595)
Q Consensus 533 PPh~-G~glGlDRLvm~l~g 551 (595)
+|+. |||||+|||++++..
T Consensus 435 ~p~~g~~giGveRli~~l~e 454 (572)
T 2j3l_A 435 SVIMGCYGIGVSRLLSAIVE 454 (572)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred eeeeeccccCHHHHHHHHHH
Confidence 5764 899999999998764
No 139
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=31.72 E-value=19 Score=38.26 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=24.9
Q ss_pred CccceeccHHHHHHHHcCCCCccccccC
Q psy3762 534 PHGGIAFGLDRLITIMTGSKSIRDVIAF 561 (595)
Q Consensus 534 Ph~G~glGlDRLvm~l~g~~~IRdvi~F 561 (595)
+|---|+|||||++++-|.+|.=|+=+|
T Consensus 215 k~IDTGmGLERla~vlQg~~snYdtDlf 242 (465)
T 1yfs_A 215 PNIDTGMGLERIASVLQGKNSNFEIDII 242 (465)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSTTT
T ss_pred CceecCcCHHHHHHHHcCCCccchhhhH
Confidence 6778999999999999999999998555
No 140
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=31.53 E-value=1.2e+02 Score=27.69 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=50.9
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEE-Ee--------C-----CeeEEEEECCC-cHHHHHHHhcCCCCcEEEEEeE
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDL-RD--------Y-----TGLVQIVFDPN-DIKIYKIAKIIRNEFCLQIIGK 74 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~L-rD--------~-----~g~lQvv~~~~-~~~~~~~~~~l~~es~V~V~G~ 74 (595)
..|+|.|+|.+ +|.. | .++-+.| .+ | +..+.|++-.. ..+ ...+.|+.|+.|.|+|.
T Consensus 24 NkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe--~~~~~l~KG~~V~VeGr 101 (169)
T 3lgj_A 24 NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAK--IALQYLHKGSKVYIEGK 101 (169)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHH--HHHHHCCTTCEEEEEEE
T ss_pred eEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHH--HHHHhCCCCCEEEEEEE
Confidence 46999999975 5643 4 2332222 11 1 22477887654 322 22355999999999999
Q ss_pred EEeCCCCCCCCCcCCccEEEEE----eeEEEeecC
Q psy3762 75 VCSRPNKTNNTNLISGNIEILC----RELKILNSS 105 (595)
Q Consensus 75 v~~~~~~~~~~~~~~g~iEl~v----~~i~vls~~ 105 (595)
+..+.-...+. .+....||.| .+|++|+..
T Consensus 102 L~~r~~~dkdG-~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 102 LQTRKWQDKNG-HDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEECC---------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEECCCC-CEEEEEEEEEEeccCcEEEccCC
Confidence 98764322221 1234578887 589999764
No 141
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=31.27 E-value=88 Score=33.03 Aligned_cols=96 Identities=16% Similarity=0.237 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCCeeeccCC-hHHHHHHHHh---hCCCceEEEeccee
Q psy3762 143 YKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQS-PQLFKQLLMV---ANFDRYYQITKCFR 218 (595)
Q Consensus 143 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~S-pql~~q~ll~---~g~~rvf~i~~~FR 218 (595)
++|-+.+-+||.++|...|..-.|.+... .. +.++.| +..++...+- ....|+-...+|.|
T Consensus 5 ~eiR~~Fl~FF~~kgH~~v~Ssslvp~~D--------------pt-LLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR 69 (441)
T 3hy0_A 5 AEIRQAFLDFFHSKGHQVVASSSLVPHND--------------PT-LLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVR 69 (441)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSCSSC--------------TT-CSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCeEcCCCCccCCCC--------------CC-ceeecccchhhhhhhcCCCCCCCCCcccccccee
Confidence 45667778899999999887655554210 01 112223 3333443221 12468999999999
Q ss_pred c-------CCCC-CCCCc-cccccccccccCCH--HHHHHHHHHHHH
Q psy3762 219 D-------EDLR-SDRQP-EFTQIDCETSFMNE--EEIRNLFEEMIR 254 (595)
Q Consensus 219 ~-------E~~~-~~r~~-EFt~lE~e~~~~~~--~dl~~~~E~ll~ 254 (595)
. |+++ +.||+ =|-||- -.+|.+| ++.+..+-+|+-
T Consensus 70 ~gGKHnDlenVG~t~rHhTfFEMLG-NfSFGDYFK~eAI~~Awe~LT 115 (441)
T 3hy0_A 70 AGGKHNDLENVGYTARHHTFFEMLG-NFSFGDYFKLDAILFAWLLLT 115 (441)
T ss_dssp EETTEECGGGBTTBSSCCSEEEEEE-EEESSSCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHhhCCCCccccceeecc-ccccchhhHHHHHHHHHHHhC
Confidence 7 3343 56777 566653 4567786 788887777764
No 142
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=31.04 E-value=2.2e+02 Score=23.38 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=52.3
Q ss_pred ccCCCEEEEEEEEE---eEecc-C-CeEEEEEEeC---CeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCC
Q psy3762 12 KLLDQVISLCGWVH---RKRNH-G-GIIFIDLRDY---TGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTN 83 (595)
Q Consensus 12 ~~~g~~V~i~GwV~---~~R~~-g-~l~Fi~LrD~---~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~ 83 (595)
...++.++|.|-|. -.|.. + .+.| .|.|+ ...+.|......|+ ..+.|.-|.++|++...
T Consensus 5 ~~~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~~~v~V~Y~GilPD------lFrEGqgVV~~G~l~~~----- 72 (94)
T 2kct_A 5 QDKLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTSKTVWVLYKGAVPD------TFKPGVEVIIEGGLAPG----- 72 (94)
T ss_dssp SCTTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTTCEEEEEEESCCCT------TCCTTCEEEEEEEECTT-----
T ss_pred CCCCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCCcEEEEEECCCCCc------cccCCCeEEEEEEEeCC-----
Confidence 35688999999996 34442 4 5776 67888 77899999876553 35779999999998530
Q ss_pred CCCcCCccEEEEEeeEEEeecCC
Q psy3762 84 NTNLISGNIEILCRELKILNSSI 106 (595)
Q Consensus 84 ~~~~~~g~iEl~v~~i~vls~~~ 106 (595)
.| .+.+++ ||.+|+
T Consensus 73 -----~g--~F~A~e--vLaKh~ 86 (94)
T 2kct_A 73 -----ED--TFKART--LMTKCP 86 (94)
T ss_dssp -----CS--EEEEEE--EEESSC
T ss_pred -----CC--EEEEeE--EEEeCC
Confidence 12 255555 777775
No 143
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=30.88 E-value=1.2e+02 Score=28.42 Aligned_cols=83 Identities=12% Similarity=0.148 Sum_probs=48.3
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEEEe---------------CCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeE
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDLRD---------------YTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGK 74 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~LrD---------------~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~ 74 (595)
..|+|.|+|.+ +|.. | .++-+.|-- .+..+.|++=.+..+ ...+.|+.|+.|.|+|.
T Consensus 5 N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE--~v~~~L~KG~~V~VeGr 82 (199)
T 3eiv_A 5 TVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAE--NVAESLQRGMRVIVQGR 82 (199)
T ss_dssp CEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHH--HHHHHCCTTCEEEEEEE
T ss_pred cEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHH--HHHHhcCCCCEEEEEEE
Confidence 46888898864 4432 3 244333321 123477777654322 23456999999999999
Q ss_pred EEeCCCCCCCCCcCCccEEEEEeeEEE
Q psy3762 75 VCSRPNKTNNTNLISGNIEILCRELKI 101 (595)
Q Consensus 75 v~~~~~~~~~~~~~~g~iEl~v~~i~v 101 (595)
++.+.-...+. .+...+||.|++|.+
T Consensus 83 L~~rswedkdG-~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 83 LKQRSYEDREG-VKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEC---------CCEEEEEEEEEEE
T ss_pred EEeeEEECCCC-CEEEEEEEEEEEEec
Confidence 99764322111 133468999998864
No 144
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=30.36 E-value=89 Score=25.59 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=44.5
Q ss_pred cccCCCEEEEEEEEEeEeccC----CeEEE-EEEeCCe----eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762 11 EKLLDQVISLCGWVHRKRNHG----GIIFI-DLRDYTG----LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSR 78 (595)
Q Consensus 11 ~~~~g~~V~i~GwV~~~R~~g----~l~Fi-~LrD~~g----~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 78 (595)
...+|+-|.++|-|..+|... ..-|| .+||... .+-.-+...+ ......|..||+-.|.|.|..-
T Consensus 45 sdylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshn---sadvealsngsvativgqvhqv 118 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHN---SADVEALSNGSVATIVGQVHQV 118 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGG---HHHHTTCCTTSEEEEEEECCCC
T ss_pred hhhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCc---chhhHhhcCCceeeEeeeeeee
Confidence 456899999999999998863 34454 4666543 2443333222 2346789999999999998654
No 145
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=29.78 E-value=2.5e+02 Score=23.54 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=47.5
Q ss_pred ccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEe
Q psy3762 4 HYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCS 77 (595)
Q Consensus 4 ~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 77 (595)
...++|.....|.+|+.=|-|++-. .|- +.|.+...+ +-++-+.. .+.+ .++.|..|-|.|.+++
T Consensus 10 ~~Ls~lp~~~~G~KVRFLGCV~sY~-tg~---L~Le~~~~~--v~VDV~lv--L~~l-~~~vGeWvNVvGYir~ 74 (105)
T 3kf6_B 10 IFINQINDCKDGQKLRFLGCVQSYK-NGI---LRLIDGSSS--VTCDVTVV--LPDV-SIQKHEWLNIVGRKRQ 74 (105)
T ss_dssp CCGGGGGGSCTTCEEEEEEEEEEEE-TTE---EEEEETTEE--EEEECTTS--CCSS-CCCTTCEEEEEEEEEE
T ss_pred eehhhccCCCCCCEEEEEEEeeeec-cEE---EEEccCCcE--EEEEHHHh--hchh-eeecccEEEEEEEEec
Confidence 5678999999999999999999998 553 456655544 44443321 1122 7899999999999986
No 146
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=29.33 E-value=1.6e+02 Score=32.62 Aligned_cols=102 Identities=16% Similarity=0.250 Sum_probs=72.9
Q ss_pred hhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccc-------hhhhHHHHHHHHHhCCCCceEEEEeccccccCC
Q psy3762 293 IFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSIS-------RNEINYYTQFVKTYGAKGLTYIKIHKISKEFDG 365 (595)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 365 (595)
++.|++++|.++..+++++ .|++.++..|+-..+. |..--++.++++.++..|+.- . +.
T Consensus 276 ~i~dvt~~f~~t~s~vi~~-----~g~v~a~~~~gf~g~~g~~~q~~rr~~te~~d~~k~~~~~g~~h----t-----de 341 (619)
T 2d6f_C 276 KIFDVSEVFADTESRIISS-----AESVLAVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRGVSGIFH----T-----DE 341 (619)
T ss_dssp EEECTTGGGTTCSCHHHHT-----SSEEEEEEETTCTTTSSSEEETTEEHHHHHHHHHHTTSCSCCEE----T-----TT
T ss_pred ccchhhhhhccccchhhhc-----cceeEEeeccCcccccccccccCcccchhhhHHHHhhccCcccc----c-----cc
Confidence 4568889998888777764 3889999888543322 222237788888887666541 1 11
Q ss_pred CCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHH
Q psy3762 366 LKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSAL 411 (595)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~ 411 (595)
| +...++.++.+.|...+++..+|.+...++.++.+..++..+
T Consensus 342 l---p~ygi~~~ev~~l~~~~~~~~~da~~~v~~~~~~~~~a~~~v 384 (619)
T 2d6f_C 342 L---PAYGITEEEVRGLRDAVGASQGDAVVMVAHERVTAENALREV 384 (619)
T ss_dssp T---TCSSCCHHHHHHHHHHTTCCSSSEEEEEEECHHHHHHHHHHH
T ss_pred c---cccCccHHHHHHHHHHhcCCcccceEEeccchhhhhhhhhhH
Confidence 1 234577889999999999999999998888887777777775
No 147
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=28.58 E-value=1.7e+02 Score=21.23 Aligned_cols=50 Identities=6% Similarity=-0.170 Sum_probs=35.6
Q ss_pred EEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE
Q psy3762 19 SLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII 72 (595)
Q Consensus 19 ~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~ 72 (595)
.+.|.|.+++..|..+-+.|.-+++.+-+.+.... .+ -..|..|+-|.+.
T Consensus 8 ~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s---~~-~l~L~~G~~V~~~ 57 (67)
T 1fr3_A 8 KLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDS---VA-DLDLVPGDKVTAL 57 (67)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHH---HH-HHTCCTTCEEEEE
T ss_pred EEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHH---HH-hCCCCCCCEEEEE
Confidence 48999999998887777777766666666665432 12 2468999988764
No 148
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=26.78 E-value=22 Score=37.60 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.7
Q ss_pred CccceeccHHHHHHHHcCCCCccccccC
Q psy3762 534 PHGGIAFGLDRLITIMTGSKSIRDVIAF 561 (595)
Q Consensus 534 Ph~G~glGlDRLvm~l~g~~~IRdvi~F 561 (595)
+|---|+|||||++++-|.+|+=|+=+|
T Consensus 232 k~IDTGmGLERla~vlQg~~snYdtDlf 259 (441)
T 3hy0_A 232 PSVDTAMGLERIAAVLQHVNSNYDIDLF 259 (441)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSHHH
T ss_pred CceecCCCHHHHHHHHcCCCccccchhH
Confidence 5677899999999999999999988555
No 149
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=26.19 E-value=18 Score=41.12 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=0.0
Q ss_pred eccHHHHHHHHcCCCCccccccCC
Q psy3762 539 AFGLDRLITIMTGSKSIRDVIAFP 562 (595)
Q Consensus 539 glGlDRLvm~l~g~~~IRdvi~FP 562 (595)
|+|||||++++-|.+|.=|+ .|+
T Consensus 250 GmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 250 GYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred ccCHHHHHHHHcCCCchHHH-HHH
No 150
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=25.96 E-value=31 Score=39.42 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=44.3
Q ss_pred ccCCCEEEEEEEEEeEec--cC--CeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCC--CcEEEEEeEEEe
Q psy3762 12 KLLDQVISLCGWVHRKRN--HG--GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRN--EFCLQIIGKVCS 77 (595)
Q Consensus 12 ~~~g~~V~i~GwV~~~R~--~g--~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~--es~V~V~G~v~~ 77 (595)
-..|+.|+|.|.|.+... .| +..=+.+.|++|.++++.-... + ..+.++. |..+.|.|+|..
T Consensus 162 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~---~-~~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 162 LLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQD---Y-LQTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp CCSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCC---T-THHHHHTTCSSCEEEEEEECS
T ss_pred cCCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcH---H-HHhhCccCCCCEEEEEEEEEE
Confidence 345889999999977532 23 3444678899999999976531 1 1234567 999999999975
No 151
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=25.91 E-value=78 Score=31.70 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=51.0
Q ss_pred EEEEEEEEEe---Eecc--C-CeEEEEE-Ee-------C-----CeeEEEEECCCcHHHHHHHhc-CCCCcEEEEEeEEE
Q psy3762 17 VISLCGWVHR---KRNH--G-GIIFIDL-RD-------Y-----TGLVQIVFDPNDIKIYKIAKI-IRNEFCLQIIGKVC 76 (595)
Q Consensus 17 ~V~i~GwV~~---~R~~--g-~l~Fi~L-rD-------~-----~g~lQvv~~~~~~~~~~~~~~-l~~es~V~V~G~v~ 76 (595)
.|+|.|+|.+ +|.. | .++-+.| .+ | +..++|++-....+ ...+. |+.|+.|.|+|.+.
T Consensus 7 ~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae--~~~~~~l~KG~~V~VeG~L~ 84 (301)
T 1se8_A 7 HVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAE--WQAERNLKGGDAVVVEGTLE 84 (301)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHH--HHHHTCCCTTCEEEEEEEEE
T ss_pred EEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHH--HHHhhCCCCCCEEEEEEEEE
Confidence 5888888854 4543 4 2332233 11 1 12477887654322 23456 89999999999998
Q ss_pred eCCCCCCCCCcCCccEEEEEeeEEEeecC
Q psy3762 77 SRPNKTNNTNLISGNIEILCRELKILNSS 105 (595)
Q Consensus 77 ~~~~~~~~~~~~~g~iEl~v~~i~vls~~ 105 (595)
.+.-...+. .+...+||.+++|++|...
T Consensus 85 ~r~~~dkdG-~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 85 YRQWEAPEG-GKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEC------CEEEEEEEEEEEEECSSC
T ss_pred eeeEECCCC-CEEEEEEEEEeEEEEeecc
Confidence 753211111 1123589999999999753
No 152
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=25.14 E-value=1.6e+02 Score=32.71 Aligned_cols=105 Identities=17% Similarity=0.292 Sum_probs=75.1
Q ss_pred hhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccc-------hhhhHHHHHHHHHhCCCCceEEEEeccccccCC
Q psy3762 293 IFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSIS-------RNEINYYTQFVKTYGAKGLTYIKIHKISKEFDG 365 (595)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 365 (595)
++.|++++|.++...++++.++. ++++.++..|+-..+. |..--++.++++.+ ..|+..
T Consensus 285 ~~~dvt~~f~~t~s~vi~~~l~~-Gg~v~~~~~~gf~g~~g~e~q~trr~~te~~d~~k~~-~ggi~h------------ 350 (633)
T 1zq1_C 285 EFYDVTDIFENTKSKIIARVIKK-GGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKY-VPGIFH------------ 350 (633)
T ss_dssp CCEECTTTTTTCSCHHHHHHHHT-TCEEEECEETTCTTTSSSEEETTEEHHHHHHHHHTTT-CSCCEE------------
T ss_pred cccchhhhhcccchHhhhhhhcc-CCeEEEEeccCcccccccccccccccchhHHHHHHHh-hcCccc------------
Confidence 45689999999999999988764 5788888887543332 22223666777766 555431
Q ss_pred CCccc-ccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHH
Q psy3762 366 LKSPI-IKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALR 412 (595)
Q Consensus 366 ~~~~~-~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r 412 (595)
+.++ ...++.++.+.|...+++..+|.+...++.++.+..++..+.
T Consensus 351 -sdelp~ygi~~~ev~~lr~~~~~~~~da~~~v~~~~~~~~~a~~~v~ 397 (633)
T 1zq1_C 351 -IDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVI 397 (633)
T ss_dssp -GGGCSBTTBCHHHHHHHHHHTTCCSSCEEEEEEESHHHHHHHHHHHH
T ss_pred -cccccccCccHHHHHHHHHhhccCcccceEEeccchhhhhhhhhHHH
Confidence 1111 235678899999999999999999998888887878877753
No 153
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=25.06 E-value=1.5e+02 Score=22.88 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=34.2
Q ss_pred cCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcHHHHHHHhcCCCCcEEEEE
Q psy3762 13 LLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQII 72 (595)
Q Consensus 13 ~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~~~~~~~~~l~~es~V~V~ 72 (595)
.+|+. +.|.|.++...| +|++|.++ +...+..+... ......++.||.|.|.
T Consensus 4 ~~G~i--v~G~V~~v~~~G--~fV~l~~~---~~Gllh~sel~-~~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 4 EPGKF--YKGVVTRIEKYG--AFINLNEQ---VRGLLRPRDMI-SLRLENLNVGDEIIVQ 55 (80)
T ss_dssp CTTCE--EEEEEEEEETTE--EEEEEETT---EEEEECGGGCS-SCCGGGCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEeCCE--EEEEECCC---CEEEEEHHHCC-cccceeeCCCCEEEEE
Confidence 34554 789999999888 89999753 55666543210 0011468999998765
No 154
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=22.53 E-value=1.3e+02 Score=28.12 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=51.3
Q ss_pred CEEEEEEEEEe---Eecc--C-CeEEEEEE-e--------C-----CeeEEEEECCCcHHHHHHH-hcCCCCcEEEEEeE
Q psy3762 16 QVISLCGWVHR---KRNH--G-GIIFIDLR-D--------Y-----TGLVQIVFDPNDIKIYKIA-KIIRNEFCLQIIGK 74 (595)
Q Consensus 16 ~~V~i~GwV~~---~R~~--g-~l~Fi~Lr-D--------~-----~g~lQvv~~~~~~~~~~~~-~~l~~es~V~V~G~ 74 (595)
..|+|.|+|.+ +|.. | .++-+.|- + + +..+.|++=.+. ..+.+ +.|+.|+.|.|+|.
T Consensus 27 NkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~--lAe~~~~yL~KGs~V~VeGr 104 (193)
T 3pgz_A 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNEN--LVKVVEQYLKKGSKIYIEGQ 104 (193)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHH--HHHHHHHHCCTTCEEEEEEE
T ss_pred CEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHH--HHHHHHhhcCCCCEEEEEEE
Confidence 45999999976 6653 4 24322221 1 1 123777776531 22333 45999999999999
Q ss_pred EEeCCCCCCCCCcCCccEEEEEe----eEEEeecC
Q psy3762 75 VCSRPNKTNNTNLISGNIEILCR----ELKILNSS 105 (595)
Q Consensus 75 v~~~~~~~~~~~~~~g~iEl~v~----~i~vls~~ 105 (595)
++.+.-...+. .+....||.|+ +|++|+..
T Consensus 105 L~trswedkdG-~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 105 LQTRKWQDQNG-NDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEEECTTS-CEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEeECCCC-CEEEEEEEEEEeccCceEECcCC
Confidence 98763211111 12345889998 57888753
No 155
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=20.52 E-value=35 Score=31.53 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=35.0
Q ss_pred eEEEEECCCcHHHHHHHhcCCCCcEEEEEeEEEeCCCCCCCCCcCCccEEE---EEeeEEEeec
Q psy3762 44 LVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEI---LCRELKILNS 104 (595)
Q Consensus 44 ~lQvv~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~g~iEl---~v~~i~vls~ 104 (595)
.+.|++-....+ ...+.|+.|+.|.|+|.+..+.-...+. .+...+|| .+++|++|..
T Consensus 55 ~i~vv~wg~~Ae--~~~~~l~KG~~V~VeGrL~~r~~~dkdG-~~r~~~eI~v~va~~i~~l~~ 115 (178)
T 1eqq_A 55 WHRVVLFGKLAE--VASEYLRKGSQVYIEGQLRTRKWTDQSG-QDRYTTEVVVNVGGTMQMLGG 115 (178)
T ss_dssp EEEEEECHHHHH--HHHHHCCTTCEEEECCEEEEEEEECSSS-EEEEEEEEECSSSCCEECSCC
T ss_pred EEEEEEccHHHH--HHHHhcCCCCEEEEEEEEEeeeEECCCC-CEEEEEEEeeeecCeEEEccc
Confidence 477777654322 2335599999999999998753211111 01123677 6677777764
Done!