RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3762
(595 letters)
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 979 bits (2533), Expect = 0.0
Identities = 289/589 (49%), Positives = 410/589 (69%), Gaps = 9/589 (1%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
MRT YCG + + Q ++LCGWV+R+R+ G +IFID+RD G+VQ+ FDP+ K+A
Sbjct: 1 MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA 60
Query: 61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV 120
+RNEFC+Q+ G V +R K N ++ +G IE+L L I+N + LP + E
Sbjct: 61 SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-VNTEE 119
Query: 121 TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVP 180
LKYR L LR M + L+ R K+T VR+F+D F++IETP+L+K+TPEGARDYLVP
Sbjct: 120 ARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVP 179
Query: 181 SRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240
SR++ G+F+ALPQSPQLFKQLLM++ FDRYYQI KCFRDEDLR+DRQPEFTQID ETSFM
Sbjct: 180 SRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFM 239
Query: 241 NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300
++R + E ++R ++ + + L FPV+ ++ A + YGSDKPD+ + TD+ ++
Sbjct: 240 TAPQVREVMEALVRHLWLEVKGVDLG-DFPVMTFAEAERRYGSDKPDLRNPMELTDVADL 298
Query: 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKIS 360
+K +F +F+ AN GR+ L++PGG S++R +I+ Y FVK YGAKGL YIK+++ +
Sbjct: 299 LKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERA 358
Query: 361 KEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDF 420
K +G+ SP+ K+ N I+E I+++T AQ+GD+IF G D K IV + M ALR+K+
Sbjct: 359 KGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKV----- 413
Query: 421 GKRNNILN-NKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSK 479
GK + + +KW PLWVI+FPMF+ D A HHPFT+PKD + PE +
Sbjct: 414 GKDLGLTDESKWAPLWVIDFPMFEDDG-EGGLTAMHHPFTSPKDMTAAELKAAPENAVAN 472
Query: 480 AYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIA 539
AYD++ING+E+GGGS+RIH+ ++Q+ +F +L I+ + + +FGFLL++LKYG PPH G+A
Sbjct: 473 AYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLA 532
Query: 540 FGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNI 588
FGLDRL ++TG+ +IRDVIAFPKT +A CL+T APS + L EL+I
Sbjct: 533 FGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSI 581
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 950 bits (2458), Expect = 0.0
Identities = 244/595 (41%), Positives = 364/595 (61%), Gaps = 28/595 (4%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
RTHY G++ E + + + L GWV+R+R+ GG+IF+DLRD GLVQ+V P Y A
Sbjct: 2 RRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHP-ASPAYATA 60
Query: 61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQI-------D 113
+ +R E+ ++ G V RP N L +G +E+ L++L + T PF + +
Sbjct: 61 ERVRPEWVVRAKGLVRLRPEP--NPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEE 118
Query: 114 EKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEG 173
EK E LKYR L LR + MQ+NLRLR++V + FLD + F+++ETP L+KSTPEG
Sbjct: 119 EKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEG 178
Query: 174 ARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQI 233
ARD+LVP R PG F+ALPQSPQLFKQ+LMVA DRY+QI +CFRDEDLR+DRQP+FTQ+
Sbjct: 179 ARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQL 238
Query: 234 DCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLI 293
D E SF+ E++ L E ++ +F + L ++LP PFP + + A++ YGSDKPD+ L
Sbjct: 239 DLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLE 298
Query: 294 FTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTY 353
++ + + S F++F + + L +P SR E+ + K + A+GL +
Sbjct: 299 LKEVGPLFRQSGFRVFQEA-----ESVKALALPKAL--SRKEVAELEEVAKRHKAQGLAW 351
Query: 354 IKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRI 413
++ E G + K+ + E ++ TEA+ GD + + + + A+R+
Sbjct: 352 ARV-----EEGGFSGGVAKFLEP-VREALLQATEARPGDTLLFVAGPRKVAATALGAVRL 405
Query: 414 KIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNP 473
+ + + LWV++FP+ ++D+ W HHPFT+P + +P
Sbjct: 406 RA-----ADLLGLKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDP 460
Query: 474 EKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAP 533
++ + AYDL++NG E+GGGSIRIHD +Q ++F++L I + + +FGF L +L+YGAP
Sbjct: 461 GRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAP 520
Query: 534 PHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNI 588
PHGGIA+GLDRL+ +MTGS SIR+VIAFPK + + LT APS V E+QL EL +
Sbjct: 521 PHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGL 575
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 187 bits (478), Expect = 1e-53
Identities = 81/305 (26%), Positives = 140/305 (45%), Gaps = 45/305 (14%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
R+H+ ++T + + + GWVH R+ GG FI LRD TGL Q+V D + + I+
Sbjct: 2 YRSHFIADVTPEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVD-KNSSAFGIS 60
Query: 61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT-LPFQIDEKNILE 119
+ + E +Q+ G V + IE+ E+ +L+ + LP + K +
Sbjct: 61 QELTQESVIQVRGIVKADKRA-------PRGIELHAEEITLLSKAKAPLPLDVSGKVKAD 113
Query: 120 V-TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYL 178
+ T L+ RVL LR + MQ ++++ R+ L + FIEI TP + S EG
Sbjct: 114 IDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGG---- 169
Query: 179 VPSRINPGEFFA---------LPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-P 228
+ F L QSPQL+K+ LM +R +++ +R E+ +
Sbjct: 170 -------AQLFPVIYFGKEAFLAQSPQLYKE-LMAGVVERVFEVAPAWRAEESDTPFHLA 221
Query: 229 EFTQIDCETSFMNEEEIRNLFEEMIRVIF----------YKTLNIKLP---NPFPVIEWS 275
EF +D E +F + ++ L E+++ I K LN + P P ++++
Sbjct: 222 EFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYT 281
Query: 276 TAIKL 280
AI++
Sbjct: 282 EAIEI 286
Score = 89.5 bits (223), Expect = 3e-19
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 472 NPE-KIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKY 530
E S+++DLI EI GS R H E+ ++ K + F F L Y
Sbjct: 334 KSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLK----PESFEFFLKWFDY 389
Query: 531 GAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKT 564
G PPH G GL RL+ ++TG +S+++++ FP+
Sbjct: 390 GMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRD 423
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 185 bits (472), Expect = 1e-52
Identities = 91/307 (29%), Positives = 139/307 (45%), Gaps = 46/307 (14%)
Query: 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYKI 59
RTHY ITE+L Q + + GWV ++ GGI F+ +RD G+VQI + +++K+
Sbjct: 3 RTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKL 62
Query: 60 AKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT-LPFQIDEKNIL 118
+R+E + + G V P EIL ++ +LN + T LP K
Sbjct: 63 IPKLRSEDVVAVEGVVNFTPKA-------KLGFEILPEKIVVLNRAETPLPLDPTGKVKA 115
Query: 119 EV-TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDY 177
E+ T L R + LR + ++R V VR F FIEI TP + + EG
Sbjct: 116 ELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGG--- 172
Query: 178 LVPSRINPGEFFA---------LPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ- 227
E F L QSPQL+KQ++M + DR Y+I FR E+ + R
Sbjct: 173 --------TELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHL 224
Query: 228 PEFTQIDCETSFM-NEEEIRNLFEEMIRVIFY----------KTLNIKLPN---PFPVIE 273
E ID E +F+ +EEE+ + E ++ LN +L PFP +
Sbjct: 225 NEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVS 284
Query: 274 WSTAIKL 280
+ A+++
Sbjct: 285 YDKALEI 291
Score = 89.6 bits (223), Expect = 3e-19
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 477 FSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHG 536
+A+DL G EI G R H +I + K ++ F F L + +YG PPHG
Sbjct: 349 ICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLN----PESFEFYLKAFRYGMPPHG 404
Query: 537 GIAFGLDRLITIMTGSKSIRDVIAFPKT 564
G G +RLI M +IR+VI FP+
Sbjct: 405 GFGLGAERLIKQMLDLPNIREVILFPRD 432
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 170 bits (434), Expect = 7e-47
Identities = 78/329 (23%), Positives = 125/329 (37%), Gaps = 63/329 (19%)
Query: 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGG-IIFIDLRDYTGLVQIVFDPNDIKIY--- 57
R + K D+ + VH R G + F+ LR L+Q + N
Sbjct: 23 RVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKN 82
Query: 58 --KIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT-LPFQIDE 114
K A + E + + G V + + N+EI ++ ++ + LP +++
Sbjct: 83 MVKWAGSLNLESIVLVRGIVKKVDEPIKSATV--QNLEIHITKIYTISETPEALPILLED 140
Query: 115 KNILEV-------------TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEI 161
+ E T L YRV+ LR Q R++ V R++L +KKF E+
Sbjct: 141 ASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEV 200
Query: 162 ETPILSKSTPEGARDYLVPSRINPGEFFALP---------QSPQLFKQLLMVANFDRYYQ 212
TP L + EG F + QSPQ KQ L+VA+F+R Y+
Sbjct: 201 HTPKLLGAPSEGG-----------SSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 249
Query: 213 ITKCFRDEDLRSDRQ-PEFTQIDCETSFM-NEEEIRNLFEEMIRVIF------------- 257
I FR E+ + R EFT +D E +F + E+ + E+ IF
Sbjct: 250 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIEL 309
Query: 258 ----YKTLNIKLP--NPFPVIEWSTAIKL 280
Y KLP + + I++
Sbjct: 310 VRKQYPVEEFKLPKDGKMVRLTYKEGIEM 338
Score = 90.8 bits (226), Expect = 1e-19
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 472 NPE-KIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKY 530
+P +S +YD + G EI G+ RIHD + ++ K + + + Y
Sbjct: 390 DPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPE--DPGLKDYCDGFSY 447
Query: 531 GAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKT 564
G PPH G GL+R++ K+IR FP+
Sbjct: 448 GCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRD 481
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 166 bits (423), Expect = 7e-46
Identities = 67/308 (21%), Positives = 124/308 (40%), Gaps = 47/308 (15%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYK 58
+ YC + +L + + L GWV+ G IF+ +RD TG+VQ V N + + ++
Sbjct: 2 IEKVYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFE 61
Query: 59 IAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNIL 118
AK + E + + G V + G E+ +L+++ + P + +
Sbjct: 62 KAKKLGRESSVIVEGIVKADERA-------PGGAEVHVEKLEVIQAVSEFPIPENPEQAS 114
Query: 119 EVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYL 178
L YR L++R ++++ + M R++L + E+ PIL EG
Sbjct: 115 PELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGG---- 170
Query: 179 VPSRINPGEFFA---------LPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-P 228
F L QS QL+ + + ++ + +T FR E R+ R
Sbjct: 171 -------ATLFKLKYFDKYAYLSQSAQLYLEAAIFG-LEKVWSLTPSFRAEKSRTRRHLT 222
Query: 229 EFTQIDCETSFMNEEEIRNLFEEMIRVIF----------YKTLNIKLP------NPFPVI 272
EF ++ E ++M+ +I + EE++ + + L PFP I
Sbjct: 223 EFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRI 282
Query: 273 EWSTAIKL 280
+ AI +
Sbjct: 283 SYDEAIDI 290
Score = 76.5 bits (189), Expect = 6e-15
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 478 SKAYDLII-NGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPH 535
A D++ G+ EI GGS R D + +D + + L+ +YG+ PH
Sbjct: 344 VLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMD----PKDYEWYLDLRRYGSVPH 399
Query: 536 GGIAFGLDRLITIMTGSKSIRDVIAFPKT 564
G G++RL+ + IR FP+T
Sbjct: 400 SGFGLGVERLVAWVLKLDHIRWAALFPRT 428
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 166 bits (422), Expect = 9e-46
Identities = 74/308 (24%), Positives = 139/308 (45%), Gaps = 58/308 (18%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
MR ++ + + Q + L G++H +R+ G I F+ LRD +G+VQ+V
Sbjct: 1 MRV-LVRDL-KAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG--------L 50
Query: 61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT-LPFQIDEKNI-- 117
K+ E L++ G V G +E+ +E+++L+ ++ P +I ++
Sbjct: 51 KLPLPESALRVRGLVVENAKA-------PGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 118 -LEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARD 176
+ T L+YR + LR + + L+++ + R++LD + F EI TP + ++ EG
Sbjct: 104 NPD-TLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGG-- 160
Query: 177 YLVPSRINPGEFFA---------LPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ 227
F L QSPQL+KQ +MV F+R Y++ +R E+ + R
Sbjct: 161 ---------SGLFGVDYFEKRAYLAQSPQLYKQ-IMVGVFERVYEVAPVWRMEEHHTSRH 210
Query: 228 -PEFTQIDCETSFM-NEEEIRNLFEEMIRVIF----------YKTLNIKLP---NPFPVI 272
E+ +D E F+ +EE++ L E ++ + + L P P +
Sbjct: 211 LNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRL 270
Query: 273 EWSTAIKL 280
+ A ++
Sbjct: 271 THAEAKRI 278
Score = 90.7 bits (226), Expect = 1e-19
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 462 KDGYEDFIITN-PEKI-----------FSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKV 509
+ G + +T P + ++++DL+ G EI G RIH E + K
Sbjct: 306 RWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKA 365
Query: 510 LNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKT 564
+D F L KYG PPHGG A G +RL + G ++R AFP+
Sbjct: 366 KGMD----PEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRD 416
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 153 bits (390), Expect = 5e-41
Identities = 65/296 (21%), Positives = 130/296 (43%), Gaps = 37/296 (12%)
Query: 10 TEKLLDQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFC 68
L ++++ GW + R +IF++LRD +G Q V ++ + K++ E
Sbjct: 25 AAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECS 84
Query: 69 LQIIGKVCSRPNKTNNTNLIS-GNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRV 127
L+I G++ + K + + N+E+ E K++ S I K+ ++ R
Sbjct: 85 LEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRH 144
Query: 128 LYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGE 187
+ +R +H Q+ L+LR ++ RK+ F EI+ P + K+ EG
Sbjct: 145 IVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGG-----------ST 193
Query: 188 FFA---------LPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQP-EFTQIDCET 237
F L QS QL+ + ++ + + + + +R E R+ R E+ ++ E
Sbjct: 194 LFKLQYFNEPAYLTQSSQLYLESVIAS-LGKSFCMLSSYRAEQSRTVRHLAEYLHLEAEL 252
Query: 238 SFMNEEEIRNLFEEMIRVIFYKTL------------NIKLPN-PFPVIEWSTAIKL 280
F++ E++ N E+++ + + ++KLP PF + ++ AIK
Sbjct: 253 PFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKY 308
Score = 75.4 bits (186), Expect = 1e-14
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 478 SKAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHG 536
+++ DL++ G EI GGS+RI + + +K ++ + + KYG+ PHG
Sbjct: 367 TESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLN----PDPYYWYTQQRKYGSCPHG 422
Query: 537 GIAFGLDRLITIMTGSKSIRDVIAFPKT 564
G G++RL+ + G IR V +P+
Sbjct: 423 GYGLGVERLVMWLLGEDHIRKVCLYPRY 450
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 146 bits (370), Expect = 2e-38
Identities = 62/297 (20%), Positives = 113/297 (38%), Gaps = 44/297 (14%)
Query: 11 EKLLDQVISLCGWVHRKRNHG-GIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCL 69
K ++ + + GW+HR R G ++F LRD TG +Q++ + Y + E +
Sbjct: 7 VKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNT-ECTV 65
Query: 70 QIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV-TNLKYRVL 128
+I G + P E++ KI+ ++ V L R L
Sbjct: 66 EIYGAIKEVPEGKE----APNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHL 121
Query: 129 YLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEF 188
+R ++ LRLR T +R+ + ++E+ P L ++ EG
Sbjct: 122 VIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGG-----------STL 170
Query: 189 FA---------LPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCETS 238
F L QS QL+ + + + I + +R E R+ R E+ ++ E
Sbjct: 171 FNLDYFGEQSFLTQSSQLYLETCIPT-LGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECP 229
Query: 239 FMNEEEIRNLFEEMIRVIFYKTL--------------NIKLPN-PFPVIEWSTAIKL 280
F+ +++ EE++ + L + P PF +E+ AIK
Sbjct: 230 FITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKW 286
Score = 74.2 bits (183), Expect = 3e-14
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 479 KAYDLIINGW-EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGG 537
++ DL++ G EI GGS+RI + K FK + ID + + L+ YG PHGG
Sbjct: 347 ESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEID----PKPYYWYLDQRLYGTCPHGG 402
Query: 538 IAFGLDRLITIMTGSKSIRDVIAFPKT 564
GL+R I +T + IRDV +P+
Sbjct: 403 YGLGLERFICWLTNTNHIRDVCLYPRF 429
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 142 bits (360), Expect = 1e-36
Identities = 65/365 (17%), Positives = 126/365 (34%), Gaps = 96/365 (26%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPND------- 53
++ + + ++ +++ V R G ++F+ LR Q + ++
Sbjct: 48 LKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETISKEFV 107
Query: 54 ----------------------------------IKIYKIAKIIRNEFCLQIIGKVCSRP 79
I + IA + E+ L + + + P
Sbjct: 108 QFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFP 167
Query: 80 --------------NKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV---TN 122
++ L + L + + L + + ++V T
Sbjct: 168 SSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTR 227
Query: 123 LKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSR 182
L R+L LR R++ R+FL S+KF+EI TP L + EG
Sbjct: 228 LDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGG-------- 279
Query: 183 INPGEFFALP---------QSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQ 232
F + QSPQL+KQ+ ++ +F + +++ FR E+ + R EF
Sbjct: 280 ---SNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEG 336
Query: 233 IDCETSFM-NEEEIRNLFEEMIRVIF----------YKTLNIKLPN------PFPVIEWS 275
+D E + N E ++ E++ IF K + + P PF + +
Sbjct: 337 LDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRPFLRLTYK 396
Query: 276 TAIKL 280
AI++
Sbjct: 397 EAIEM 401
Score = 91.0 bits (226), Expect = 2e-19
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 477 FSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHG 536
+S +YD+ + G EI G+ RIHD E K +D + S ++G+ PH
Sbjct: 459 YSNSYDVFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPA----TLKDYIESFRFGSWPHA 514
Query: 537 GIAFGLDRLITIMTGSKSIRDVIAFPKT 564
G GL+R+ + G +IR V FP+
Sbjct: 515 GCGIGLERITMLYLGIPNIRKVTLFPRD 542
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 104 bits (261), Expect = 6e-25
Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 27/179 (15%)
Query: 126 RVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTP--------EGARDY 177
+ + + + L ++ K+ + F + F + I+S T EG
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPA 61
Query: 178 LVPSRINPGEFFA----LPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ---PEF 230
E + L S L KQL + + + ++ R E + D EF
Sbjct: 62 -------EVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEF 114
Query: 231 TQIDCETSFMNEEEIRNLFEEMIRVIFYKTLN-----IKLPNPFPVIEWSTAIKLYGSD 284
TQ+D E E+I L E ++ +F K F V E+S ++ +GSD
Sbjct: 115 TQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSD 173
Score = 79.6 bits (197), Expect = 2e-16
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 24/141 (17%)
Query: 438 NFPMFKYDKINNNW---IARHHPFTAPKDGYEDFIITNPEKIF--------SKAYDLII- 485
F +F+Y ++ + P F I N + F + YDLI+
Sbjct: 157 RFEVFEYSEVLEEFGSDEKASQEMEEP------FWIINIPREFYDREVDGFWRNYDLILP 210
Query: 486 -NGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGA-PPHGGIAFGLD 543
E+ G R + E + ++ + F L K G P G G++
Sbjct: 211 YGYGEVASGGEREWEYEKIVAKIRKAGLN----EDSFRPYLEIAKAGKLKPSAGAGIGVE 266
Query: 544 RLITIMTGSKSIRDVIAFPKT 564
RL+ + G+K I +V FP+
Sbjct: 267 RLVRFIVGAKHIAEVQPFPRI 287
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 83.8 bits (208), Expect = 4e-17
Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 68/290 (23%)
Query: 2 RTHYCGNITEK---------LLDQVISLCGWVHRKRNHGG-IIFIDLRDYTGLVQIVFDP 51
+ +K L D + + G +H KR GG +IF DLR +Q++ +
Sbjct: 33 VDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANS 92
Query: 52 NDIK----IYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSI- 106
+ K I +R IIG V P KT G + I+ E+ +L+ +
Sbjct: 93 RNYKSEEEFIHINNKLRRG---DIIG-VQGNPGKTK-----KGELSIIPYEITLLSPCLH 143
Query: 107 TLPFQIDEKNILEVTNLKYRVLYLRY------KHMQKNLRLRYKVTMEVRKFLDSKKFIE 160
LP L+ +YR RY +++ +R K+ +R FLD F+E
Sbjct: 144 MLP---HLHFGLKDKETRYR---QRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLE 197
Query: 161 IETPILSKSTPEGAR-----------D---YLVPSRINPGEFFALPQSPQLFKQLLMVAN 206
IETP+++ P GA D Y+ RI +P+L+ ++L+V
Sbjct: 198 IETPMMN-IIPGGAVAKPFITYHNELDMNLYM---RI----------APELYHKMLVVGG 243
Query: 207 FDRYYQITKCFRDEDLRSDRQ--PEFTQIDCETSFMNEEEIRNLFEEMIR 254
DR Y+I + FR+E + D PEFT + ++ + ++ + E+M+
Sbjct: 244 IDRVYEIGRQFRNEGI--DLTHNPEFTTCEFYMAYADYHDLMEITEKMVS 291
Score = 59.5 bits (145), Expect = 2e-09
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 525 LNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
+L+YG PP G G+DR+ +T S +I++V+ FP
Sbjct: 466 CTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 82.9 bits (206), Expect = 5e-17
Identities = 71/333 (21%), Positives = 127/333 (38%), Gaps = 90/333 (27%)
Query: 2 RTHYCGNITEKL----------LDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDP 51
RTH + E +++ G + KR G F ++D TG +QI
Sbjct: 33 RTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQ 92
Query: 52 NDI--KIYKIAK------IIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILN 103
+D+ + Y++ K I+ + G + KT G + I + L
Sbjct: 93 DDVGEQQYELFKISDLGDIV------GVRGTMF----KTK-----VGELSIKVSSYEFLT 137
Query: 104 SSI-TLPFQIDEK-NILEVTNLKYRVLYLRY------KHMQKNLRLRYKVTMEVRKFLDS 155
++ LP EK + L+ +YR RY +K R + +R++LDS
Sbjct: 138 KALRPLP----EKYHGLKDIEQRYR---QRYLDLIMNPESKKTFITRSLIIQSMRRYLDS 190
Query: 156 KKFIEIETPILSKSTPEGA-------------RD-YLVPSRINPGEFFALPQSPQLFKQL 201
++E+ETP++ + GA Y+ RI + +L +
Sbjct: 191 HGYLEVETPMMH-AVAGGAAARPFITHHNALDMTLYM---RI----------AIELHLKR 236
Query: 202 LMVANFDRYYQITKCFRDEDLRSDRQ--PEFTQIDCETSFMNEEEIRNLFEEMIR----- 254
L+V ++ Y+I + FR+E + + PEFT ++ ++ + +I L E +I
Sbjct: 237 LIVGGLEKVYEIGRVFRNEGI--STRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATE 294
Query: 255 -----VIFYKTLNIKLPNPFPVIEWSTAIKLYG 282
I Y + L + + AIK Y
Sbjct: 295 VLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYV 327
Score = 62.1 bits (152), Expect = 2e-10
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 16/90 (17%)
Query: 483 LIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFG----------FLLNSLKYGA 532
L I G E ++D Q++ F+ ++ + + G FL +L+YG
Sbjct: 405 LFIVGREHANAFTELNDPIDQRQRFE-----EQLKEREQGNDEAHEMDEDFL-EALEYGM 458
Query: 533 PPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
PP GG+ G+DRL+ ++T S SIRDV+ FP
Sbjct: 459 PPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 83.0 bits (206), Expect = 6e-17
Identities = 75/341 (21%), Positives = 134/341 (39%), Gaps = 93/341 (27%)
Query: 2 RTHYCGNITEK----------LLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDP 51
TH+ ++ +++ G + KR G F ++D +G +Q P
Sbjct: 63 PTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSGQIQFFVTP 122
Query: 52 NDI--KIYKIAK------IIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILN 103
D+ + Y K I+ G + +TN G + + C +L++L
Sbjct: 123 ADVGAETYDAFKKWDLGDIV------AARGVLF----RTN-----KGELSVKCTQLRLLA 167
Query: 104 SSIT-LPFQIDEK-NILEVTNLKYRVLYLRY------KHMQKNLRLRYKVTMEVRKFLDS 155
++ LP +K + L +YR RY + R R K +RKF+
Sbjct: 168 KALRPLP----DKFHGLADQETRYR---QRYVDLIVTPETRTTFRARTKAIASIRKFMGD 220
Query: 156 KKFIEIETPILSKSTPEGA-------------RD-YLVPSRINPGEFFALPQSPQLF-KQ 200
F+E+ETP+L P GA + +L RI +P+L+ K+
Sbjct: 221 ADFMEVETPMLH-PIPGGAAAKPFVTHHNALDMEMFL---RI----------APELYLKR 266
Query: 201 LLMVANFDRYYQITKCFRDEDLRSDRQ--PEFTQIDCETSFMNEEEIRNLFEEMIR---- 254
L+ V F+R ++I + FR+E + + PEFT ++ ++ + + + E +IR
Sbjct: 267 LI-VGGFERVFEINRNFRNEGV--SPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAV 323
Query: 255 ------VIFYKTLNIKLPNPFPVIEWSTAIKLY-GSDKPDM 288
I Y+ + L PF + + AI+ Y S
Sbjct: 324 DALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQ 364
Score = 61.8 bits (151), Expect = 3e-10
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 525 LNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
+ +L+YG PP GG G+DRL+ ++T S +IRDV+ FP
Sbjct: 486 IRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 82.6 bits (205), Expect = 8e-17
Identities = 74/336 (22%), Positives = 137/336 (40%), Gaps = 91/336 (27%)
Query: 2 RTHYCGNITEK----------LLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDP 51
R H + E+ L+ +S+ G + +R G F+ L+D G +Q+
Sbjct: 41 RDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVAR 100
Query: 52 NDI---------KIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKIL 102
+ + K + + II G + KT +G + I C EL++L
Sbjct: 101 DSLPEGVYNDQFKKWDLGDII------GARGTLF----KTQ-----TGELSIHCTELRLL 145
Query: 103 NSSIT-LPFQIDEK-NILEVTNLKYRVLYLRY------KHMQKNLRLRYKVTMEVRKFLD 154
++ LP +K + L+ ++YR RY ++ +R K+ +R+F+
Sbjct: 146 TKALRPLP----DKFHGLQDQEVRYR---QRYLDLIANDKSRQTFVVRSKILAAIRQFMV 198
Query: 155 SKKFIEIETPILSKSTPEGA-------------RD-YLVPSRINPGEFFALPQSPQLFKQ 200
++ F+E+ETP++ P GA D YL RI +P+L+ +
Sbjct: 199 ARGFMEVETPMMQ-VIPGGASARPFITHHNALDLDMYL---RI----------APELYLK 244
Query: 201 LLMVANFDRYYQITKCFRDEDLRSDRQ--PEFTQIDCETSFMNEEEIRNLFEEMIR---- 254
L+V F+R ++I + FR+E + + PEFT ++ ++ + ++ L E + R
Sbjct: 245 RLVVGGFERVFEINRNFRNEGI--SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQ 302
Query: 255 ------VIFYKTLNIKLPNPFPVIEWSTAIKLYGSD 284
+ Y PF + AIK Y +
Sbjct: 303 EVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE 338
Score = 61.8 bits (151), Expect = 3e-10
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)
Query: 483 LIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFG----------FLLNSLKYGA 532
I G EIG G ++DAE Q + F+ ++ G ++ +L+YG
Sbjct: 415 FFIGGREIGNGFSELNDAEDQAERFQ-----EQVNAKAAGDDEAMFYDEDYV-TALEYGL 468
Query: 533 PPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
PP G+ G+DR+I + T S +IRDVI FP
Sbjct: 469 PPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 71.1 bits (175), Expect = 2e-13
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 25/135 (18%)
Query: 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVP------SRINPGEFFA 190
NL R + E+R+F + +E+ETP +S++T +LVP + +
Sbjct: 34 PNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDI--HLVPFETRFVGPGH-----S 86
Query: 191 LPQ------SPQLF-KQLLMVANFDRYYQITKCFRDEDLRSDRQ--PEFTQIDCETSFMN 241
SP+ K+LL VA +Q+ + FR+E++ R PEFT ++ +
Sbjct: 87 QGMNLWLMTSPEYHMKRLL-VAGCGPVFQLCRSFRNEEM--GRYHNPEFTMLEWYRPHYD 143
Query: 242 EEEIRNLFEEMIRVI 256
+ N +++++ +
Sbjct: 144 MYRLMNEVDDLLQQV 158
Score = 67.6 bits (166), Expect = 2e-12
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 483 LIINGWEIGGGSIRIHDAEIQKKIFKVLN------------IDNKIVKTQFGFLLNSLKY 530
+ G E+ G + DA Q++ F+ N ID L+ +LK
Sbjct: 258 VYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQ--------NLIEALKV 309
Query: 531 GAPPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
G P G+A G+DRL+ + G++++ +VIAF
Sbjct: 310 GMPDCSGVALGVDRLVMLALGAETLAEVIAFS 341
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 6e-12
Identities = 80/664 (12%), Positives = 178/664 (26%), Gaps = 209/664 (31%)
Query: 41 YTGLVQIVFDPN---DIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCR 97
Y ++ VF+ + + + ++ + I + + + T + L
Sbjct: 18 YKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLS 73
Query: 98 ELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDS-- 155
+ + F + EV + Y+ L K Q+ + ++ +E R L +
Sbjct: 74 K----QEEMVQKF------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 156 -----------KKFIEIETPILS----------------KS--TPEGARDYLVPSRINPG 186
+ ++++ +L K+ + Y V +++
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 187 EF---FALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEE 243
F SP+ L M+ YQI + S + + +
Sbjct: 184 IFWLNLKNCNSPET--VLEMLQKL--LYQIDPNWTSRSDHSSNIK----LRIHSI---QA 232
Query: 244 EIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWST-AIKLYGSDKPDM-CIKLIFT----DL 297
E+R L + + L + L N V + A + ++ C K++ T +
Sbjct: 233 ELRRLLKSKP---YENCLLV-LLN---V--QNAKAWNAF-----NLSC-KILLTTRFKQV 277
Query: 298 TNIM------------------KDSDFKLFSKIANMK-----------NGRIIGLKIPGG 328
T+ + D L K + + N R + + I
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAES 336
Query: 329 FSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIK-YFNNL-ILEKIINKT 386
+ + K LT I + L+ + F+ L +
Sbjct: 337 IRDGLATWDNW----KHVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFPP----- 383
Query: 387 EAQNGDI------IFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFP 440
+ I + K+ V ++ L YS K+ ++
Sbjct: 384 ---SAHIPTILLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTISIPSIY----- 432
Query: 441 MFKYDKINNNWIARH----------------HPFTAPKDGYEDFIITNPEKIFSKAYDLI 484
+ N A H D Y +
Sbjct: 433 -LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY----------FY------- 474
Query: 485 INGWEIGGGSIRIHDAEIQK----KIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAF 540
IG H I+ +F+++ +D F FL +++ +
Sbjct: 475 ---SHIG-----HHLKNIEHPERMTLFRMVFLD-------FRFLEQKIRHDSTAWNASGS 519
Query: 541 GLDRLITIMTGSKSI-----------RDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNIL 589
L+ L + I ++ F + + ++ + E +
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 590 YKKT 593
+++
Sbjct: 580 FEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 1e-07
Identities = 98/606 (16%), Positives = 183/606 (30%), Gaps = 199/606 (32%)
Query: 75 VCSRPNKTNNTNLISGNIE----------ILCRELK-ILNSSITLP---FQIDEK--NIL 118
+RP L G++E + +L+ N + P F D++
Sbjct: 4 YSTRP-----LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 119 EVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYL 178
E L ++ L Y V+ V +F ++ L+ E YL
Sbjct: 59 E--------LVGKF--------LGY-VSSLVEP-SKVGQFDQV----LNLCLTEFENCYL 96
Query: 179 VPSRINPGEFFA--LPQSPQ--LFKQLLMVANFDRYYQ--------ITKCFRDEDLRSDR 226
+ I+ A L Q L K ++ N Y K R+
Sbjct: 97 EGNDIHA---LAAKLLQENDTTLVKTKELIKN---YITARIMAKRPFDKKSNSALFRAVG 150
Query: 227 QPEFT-------QIDCETSFMNEEEIRNLFE-------EMIRVIFYKTLNIKLPNP---- 268
+ Q + + F EE+R+L++ ++I+ +TL+ +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYF---EELRDLYQTYHVLVGDLIKFSA-ETLSELIRTTLDAE 206
Query: 269 ------FPVIEWSTAIKLYG-SDKPD---MC-----IKLIF-TDLTNIMKDSDFKLFSKI 312
++EW L S+ PD + LI L + + + +K+
Sbjct: 207 KVFTQGLNILEW-----LENPSNTPDKDYLLSIPISCPLIGVIQLAH------YVVTAKL 255
Query: 313 ANMKNG----RIIGLKIPGG-------FSISRNEINYYTQFVKTYGAKGLTYI------- 354
G + G + + + +++ K L +I
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV--LFFIGVRCYEA 313
Query: 355 --------KIHKISKEFD-GLKSPI--IKYFNNLILEKIINKTEAQ--NGDIIFLG---G 398
I + S E + G+ SP+ I ++ +NKT + G + + G
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 399 DEKNIV-------NNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINF-PM---FKYDKI 447
+ +V LR K ++ I ++ + F P+ F
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLR-KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF----- 427
Query: 448 NNNWIARHHPFTAPKDGYEDFIITN--PEKIFSKAYDLIINGWEIGGGS-IRIHDAEIQK 504
H P D I + + A D+ I ++ GS +R+ I +
Sbjct: 428 -------HSHLLVP---ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 505 KIFK---VLNID-NKIVKTQ------FGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKS 554
+I L + + + FG P GG + GL L
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFG----------P--GGAS-GLGVLTHRNKDGTG 524
Query: 555 IRDVIA 560
+R ++A
Sbjct: 525 VRVIVA 530
Score = 43.9 bits (103), Expect = 2e-04
Identities = 50/308 (16%), Positives = 95/308 (30%), Gaps = 117/308 (37%)
Query: 116 NILEV--TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLD----SKKFIEIETPILSKS 169
+IL++ N ++ + ++ +R Y M +D ++K + +
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKR-IRENY-SAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 170 TPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSD--RQ 227
T + L + +F P L L+ A F EDL+S
Sbjct: 1718 TFRSEKGLL-----SATQF----TQPALT--LMEKAAF------------EDLKSKGLIP 1754
Query: 228 P----------EFTQIDCETSFMNEEEIRNLFEEMIRVIFY--KTLNIKLPNPFPVIEWS 275
E+ + M+ E ++ V+FY T+ + +P
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMS-------IESLVEVVFYRGMTMQVAVPR-------- 1799
Query: 276 TAIKLYGSDKPDMC------IKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGF 329
G M + F+ ++ + ++ + G ++
Sbjct: 1800 ---DELGRSNYGMIAINPGRVAASFSQ------EALQYVVERVGK-RTGWLV-------- 1841
Query: 330 SISRNEI-NY---YTQFVKTYGAKG-----------LTYIKIHKISKEFDGLKSPIIKYF 374
EI NY Q+V A G L +IK+ KI II+
Sbjct: 1842 -----EIVNYNVENQQYV----AAGDLRALDTVTNVLNFIKLQKI---------DIIELQ 1883
Query: 375 NNLILEKI 382
+L LE++
Sbjct: 1884 KSLSLEEV 1891
Score = 40.0 bits (93), Expect = 0.003
Identities = 69/405 (17%), Positives = 116/405 (28%), Gaps = 167/405 (41%)
Query: 4 HYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDY----TGLVQ-IV---------- 48
HY +T KLL G+ G +LR Y TG Q +V
Sbjct: 248 HYV--VTAKLL-------GF-----TPG-----ELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 49 ---FDPNDIKIYKIAKII--RNEFCLQIIGKVCSRPN-----KTNNTNL------ISG-N 91
F + K + I R C + P+ NN + IS
Sbjct: 289 WESFFVSVRKAITVLFFIGVR---CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 92 IEILCRELKILNSSITLPFQIDEKNI-LEVTN-------------LKYRVLYLRYKHMQK 137
E + + NS LP K + + + N L L LR
Sbjct: 346 QEQVQDYVNKTNSH--LP---AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 138 NLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQL 197
L + ++ RK S +F+ + +P S LVP+ L
Sbjct: 401 GLD-QSRIPFSERKLKFSNRFLPVASPFHS--------HLLVPAS-------------DL 438
Query: 198 FKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIR----NLFEEMI 253
+ L+ N F +D++ P + + ++R ++ E ++
Sbjct: 439 INKDLVKNNVS--------FNAKDIQI---PVY-------DTFDGSDLRVLSGSISERIV 480
Query: 254 RVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDF------- 306
I + W T + T+I+ DF
Sbjct: 481 DCIIRLPVK-----------WETTTQ---------------FKATHIL---DFGPGGASG 511
Query: 307 --KLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAK 349
L + K+G + + + G I+ ++ YG K
Sbjct: 512 LGVLTHRN---KDGTGVRVIVAGTLDINPDD---------DYGFK 544
Score = 33.5 bits (76), Expect = 0.27
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 23/79 (29%)
Query: 1 MRTHYCGNITEKLLDQVISL-CGW---VHRKRNH------GGI-----IFIDLRDYTGLV 45
+R G+I+E+++D +I L W K H GG + +D TG V
Sbjct: 468 LRV-LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG-V 525
Query: 46 QIVF------DPNDIKIYK 58
+++ +P+D +K
Sbjct: 526 RVIVAGTLDINPDDDYGFK 544
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 48.7 bits (116), Expect = 2e-06
Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 25/186 (13%)
Query: 98 ELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQ-----KNLRLRYKVTMEVRKF 152
+ L + +I + L+ +L R K +Q + K+ E+ +F
Sbjct: 30 QTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRF 89
Query: 153 LDSKKFIEIETPIL------SKSTPEGARDYLVPSRINPGEFFAL-----PQSPQLFKQL 201
+ F+EI++PIL + + L + F L P ++L
Sbjct: 90 FVDRGFLEIKSPILIPLEYIERMGIDN-DTELSKQIFRVDKNFCLRPMLTPNLYNYLRKL 148
Query: 202 LMVANF-DRYYQITKCFRDEDLRSDRQPEFTQIDCET--SFMNEEEIRNLFEEMIRVIFY 258
+ ++I C+R E + EFT + S E + ++ + F
Sbjct: 149 DRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITD-----FL 203
Query: 259 KTLNIK 264
L I
Sbjct: 204 NHLGID 209
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 37.5 bits (87), Expect = 0.007
Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 20/132 (15%)
Query: 148 EVRKFLDSKKFIEIETP-ILSKSTPE----GARDYLVPSRINPGEFFAL-----PQSPQL 197
++ K L + F+++ TP I++KS G L L P L
Sbjct: 79 KLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTL 138
Query: 198 FKQLLMVANFD---RYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIR 254
+++L +D R ++I C+R E + EFT ++ E R + +
Sbjct: 139 WRELE--RLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTE-LGTPLEER--HQRLED 193
Query: 255 VI--FYKTLNIK 264
+ + I+
Sbjct: 194 MARWVLEAAGIR 205
Score = 36.0 bits (83), Expect = 0.028
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 26/96 (27%)
Query: 464 GYEDF-IITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFG 522
G +F ++T ++ D++ E+ G++ H + + +IF
Sbjct: 203 GIREFELVTESSVVYGDTVDVMKGDLELASGAMGPHFLDEKWEIFD-------------- 248
Query: 523 FLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDV 558
P G+ FGL+RL+ I G++ ++ +
Sbjct: 249 -----------PWVGLGFGLERLLMIREGTQHVQSM 273
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 35.3 bits (81), Expect = 0.059
Identities = 24/204 (11%), Positives = 50/204 (24%), Gaps = 42/204 (20%)
Query: 112 IDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTME-VRKFLDSKKFIEIETPILSK-- 168
+D L L + L ++ E ++K L K ++ L
Sbjct: 109 LDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEI 168
Query: 169 ----STPEGARDYLVPSRINPGEFFALPQ--------------SPQLFKQLLMVANFD-- 208
+ +I F + F + + N
Sbjct: 169 SNALEISSE-----MGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPL 223
Query: 209 --RYYQITKCFRDEDLRSDRQ--PEFTQIDCETSFMNEEEI--RNL---FEEMIRVIFYK 259
+ + I +CFR E D+ + C + E + + E ++ +
Sbjct: 224 PFKLFSIDRCFRREQK-EDKSHLMTYHSASC---AIAGEGVDINDGKAIAEGLLSQFGFT 279
Query: 260 TLNIKL-PNPFPVIEWSTAIKLYG 282
T ++Y
Sbjct: 280 NFKFIPDEKKSKYYTPETQTEVYA 303
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 33.8 bits (77), Expect = 0.19
Identities = 24/204 (11%), Positives = 50/204 (24%), Gaps = 42/204 (20%)
Query: 112 IDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTME-VRKFLDSKKFIEIETPILSK-- 168
+D L L + L ++ E ++K L K ++ L
Sbjct: 109 LDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEI 168
Query: 169 ----STPEGARDYLVPSRINPGEFFALPQ--------------SPQLFKQLLMVANFD-- 208
+ +I F + F + + N
Sbjct: 169 SNALEISSE-----MGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPL 223
Query: 209 --RYYQITKCFRDEDLRSDRQ--PEFTQIDCETSFMNEEEI--RNL---FEEMIRVIFYK 259
+ + I +CFR E D+ + C + E + + E ++ +
Sbjct: 224 PFKLFSIDRCFRREQK-EDKSHLMTYHSASC---AIAGEGVDINDGKAIAEGLLSQFGFT 279
Query: 260 TLNIKL-PNPFPVIEWSTAIKLYG 282
T ++Y
Sbjct: 280 NFKFIPDEKKSKYYTPETQTEVYA 303
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.21
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 272 IEWSTAIKLYGSDK-PDMCIK 291
++ ++KLY D P + IK
Sbjct: 25 LQ--ASLKLYADDSAPALAIK 43
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 33.4 bits (76), Expect = 0.23
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 16/101 (15%)
Query: 194 SPQLFKQLLMVANFD----RYYQITKCFRDEDLRSDRQ--PEFTQIDCETSFMNEEEI-- 245
+ F + + N + + I +CFR E D+ + C + E +
Sbjct: 207 TSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQK-EDKSHLMTYHSASC---AIAGEGVDI 262
Query: 246 RNL---FEEMIRVIFYKTLNIKL-PNPFPVIEWSTAIKLYG 282
+ E ++ + T ++Y
Sbjct: 263 NDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYA 303
Score = 28.8 bits (64), Expect = 6.6
Identities = 17/151 (11%), Positives = 38/151 (25%), Gaps = 39/151 (25%)
Query: 144 KVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLM 203
+R+ F E P++ + + +
Sbjct: 69 DTIENLRQAYLRMGFEEYINPVIVDE----------------RDIYKQFGPEAM------ 106
Query: 204 VANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEM---------IR 254
A DR + + R + SD + + ++E ++ + +
Sbjct: 107 -AVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLV 165
Query: 255 VIFYKTLNIKLPNP-------FPVIEWSTAI 278
+ L I FP + TA+
Sbjct: 166 LEISNALEISSEMGLKILEDVFPEFKDLTAV 196
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 32.6 bits (75), Expect = 0.40
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 209 RYYQITKCFRDEDLRSDRQPEFTQIDCE 236
R + +R + + EF Q+ E
Sbjct: 105 RLAYQSNVYRAQQNEGGKPAEFEQLGVE 132
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 32.6 bits (74), Expect = 0.40
Identities = 23/204 (11%), Positives = 49/204 (24%), Gaps = 42/204 (20%)
Query: 112 IDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTME-VRKFLDSKKFIEIETPILSK-- 168
+D L L + L ++ E ++K L K ++ L
Sbjct: 109 LDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEI 168
Query: 169 ----STPEGARDYLVPSRINPGEFFALPQ--------------SPQLFKQLLMVANFD-- 208
+ +I F + F + + N
Sbjct: 169 SNALEISSE-----MGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPL 223
Query: 209 --RYYQITKCFRDEDLRSDRQ--PEFTQIDC-----ETSFMNEEEIRNLFEEMIRVIFYK 259
+ + I +CFR E D+ + C + + + E ++ +
Sbjct: 224 PFKLFSIDRCFRREQK-EDKSHLMTYHSASCAIAGEGVDI---NDGKAIAEGLLSQFGFT 279
Query: 260 TLNIKL-PNPFPVIEWSTAIKLYG 282
T ++Y
Sbjct: 280 NFKFIPDEKKSKYYTPETQTEVYA 303
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 32.2 bits (74), Expect = 0.43
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 209 RYYQITKCFRDEDLRSDRQPEFTQIDCET----SFMNEEEIRNLFEEMIRVIFYKTLNIK 264
++Y I +C+R E + R+ E Q + + S E E+ ++L +
Sbjct: 125 KWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACW-----AMRSLGLS 179
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 31.0 bits (71), Expect = 1.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 209 RYYQITKCFRDEDLRSDRQPEFTQIDCET 237
R+Y K +R E+ ++ R E Q + +
Sbjct: 101 RWYSFPKVWRYEEPQAGRYREHYQFNADI 129
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 30.4 bits (69), Expect = 1.5
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 209 RYYQITKCFRDEDLRSDRQP------EFTQIDCET 237
R+ + +R D + E TQ+ E
Sbjct: 119 RWCYCERVYRRTDDPASLSWASGKAAESTQVGIER 153
>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex,
SOX system, sulfa oxidation, molybdenum cofactor, heme,
electron transfer; HET: MTE HEC; 1.33A {Paracoccus
pantotrophus}
Length = 390
Score = 29.7 bits (67), Expect = 3.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 28 RNHGGIIFIDLRDYT----GLVQ--IVFDPNDIK 55
R+H G I + +DY GLV+ +VF D+
Sbjct: 74 RHHSGAIELSKQDYRLMINGLVEKPLVFTFEDLL 107
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 29.5 bits (67), Expect = 3.5
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 469 IITNPEKIFSKAYDLIINGWEIGGGS 494
++++P K+ K YD II GGG
Sbjct: 13 LLSDPSKVAGKTYDYII----AGGGL 34
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 29.5 bits (67), Expect = 4.1
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 469 IITNPEKIFSKAYDLIINGWEIGGGS 494
++T+P+ + + D II GGG
Sbjct: 8 LLTDPKDVSGRTVDYII----AGGGL 29
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET:
MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1
PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
Length = 372
Score = 28.9 bits (65), Expect = 5.0
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 28 RNHGGIIFIDLRDYT----GLVQ--IVFDPNDIK 55
RNH + ++ Y G + +++
Sbjct: 44 RNHLPVPAVEPSSYRLRVDGPGGRTLSLSLAELR 77
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA,
nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Length = 455
Score = 28.6 bits (63), Expect = 7.7
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 177 YLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLR 223
Y++P+ + G+ + L D + + K R +++
Sbjct: 270 YMIPTGLILGKMV----KWGPLRPFLSQETIDNWSVLYKHVRYGNIQ 312
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19,
conformational changes, chitin-binding, glycosidase,
hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A
Length = 204
Score = 27.9 bits (61), Expect = 8.2
Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 14/105 (13%)
Query: 411 LRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFII 470
L Y GK + +P V + W+ + +A G
Sbjct: 105 LSWNYNYGAAGKSIGF-DGLNNPEKVGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGT 163
Query: 471 TNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQ--KKIFKVLNID 513
IN E GG+ + + KKI L +D
Sbjct: 164 IK-----------AINSMECNGGNSGEVSSRVNYYKKICSQLGVD 197
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 28.0 bits (63), Expect = 8.8
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 211 YQITKCFRDEDLRSDRQPEFTQIDCET------SFMNEEEIRNLFEEMIRVIFYKTLNIK 264
YQ+ FR E + R +F Q D + S + + ++ + E ++ +NI
Sbjct: 124 YQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITE-----IFEAVNIG 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.422
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,422,899
Number of extensions: 594341
Number of successful extensions: 1608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1518
Number of HSP's successfully gapped: 73
Length of query: 595
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 496
Effective length of database: 3,937,614
Effective search space: 1953056544
Effective search space used: 1953056544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)