RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3762
(595 letters)
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 181 bits (460), Expect = 2e-52
Identities = 78/169 (46%), Positives = 116/169 (68%)
Query: 424 NNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDL 483
++ + LWV++FP+ ++D+ W HHPFT+P + +P ++ + AYDL
Sbjct: 187 PDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDL 246
Query: 484 IINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLD 543
++NG E+GGGSIRIHD +Q ++F++L I + + +FGF L +L+YGAPPHGGIA+GLD
Sbjct: 247 VLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLD 306
Query: 544 RLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKK 592
RL+ +MTGS SIR+VIAFPK + + LT APS V E+QL EL ++ +
Sbjct: 307 RLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVR 355
Score = 151 bits (382), Expect = 2e-41
Identities = 101/189 (53%), Positives = 134/189 (70%), Gaps = 7/189 (3%)
Query: 107 TLPFQIDEK-------NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFI 159
T PF +D E LKYR L LR + MQ+NLRLR++V + FLD + F+
Sbjct: 1 TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFV 60
Query: 160 EIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRD 219
++ETP L+KSTPEGARD+LVP R PG F+ALPQSPQLFKQ+LMVA DRY+QI +CFRD
Sbjct: 61 QVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRD 120
Query: 220 EDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIK 279
EDLR+DRQP+FTQ+D E SF+ E++ L E ++ +F + L ++LP PFP + + A++
Sbjct: 121 EDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAME 180
Query: 280 LYGSDKPDM 288
YGSDKPD+
Sbjct: 181 RYGSDKPDL 189
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 171 bits (435), Expect = 4e-49
Identities = 85/164 (51%), Positives = 117/164 (71%), Gaps = 1/164 (0%)
Query: 429 NKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGW 488
+KW PLWVI+FPMF+ D A HHPFT+PKD + PE + AYD++ING+
Sbjct: 184 SKWAPLWVIDFPMFE-DDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY 242
Query: 489 EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITI 548
E+GGGS+RIH+ ++Q+ +F +L I+ + + +FGFLL++LKYG PPH G+AFGLDRL +
Sbjct: 243 EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTML 302
Query: 549 MTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKK 592
+TG+ +IRDVIAFPKT +A CL+T APS + L EL+I K
Sbjct: 303 LTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVK 346
Score = 162 bits (410), Expect = 2e-45
Identities = 102/181 (56%), Positives = 134/181 (74%), Gaps = 2/181 (1%)
Query: 108 LPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILS 167
LP + N E LKYR L LR M + L+ R K+T VR+F+D F++IETP+L+
Sbjct: 2 LPLDSNHVNTEE-ARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLT 60
Query: 168 KSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ 227
K+TPEGARDYLVPSR++ G+F+ALPQSPQLFKQLLM++ FDRYYQI KCFRDEDLR+DRQ
Sbjct: 61 KATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ 120
Query: 228 PEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPD 287
PEFTQID ETSFM ++R + E ++R ++ + + L FPV+ ++ A + YGSDKPD
Sbjct: 121 PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDL-GDFPVMTFAEAERRYGSDKPD 179
Query: 288 M 288
+
Sbjct: 180 L 180
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 118 bits (298), Expect = 1e-32
Identities = 47/105 (44%), Positives = 70/105 (66%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
MRT YCG + + Q ++LCGWV+R+R+ G +IFID+RD G+VQ+ FDP+ K+A
Sbjct: 1 MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA 60
Query: 61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105
+RNEFC+Q+ G V +R K N ++ +G IE+L L I+N +
Sbjct: 61 SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain
{Escherichia coli [TaxId: 562]}
Length = 133
Score = 116 bits (291), Expect = 3e-31
Identities = 56/125 (44%), Positives = 88/125 (70%)
Query: 292 LIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGL 351
+ TD+ +++K +F +F+ AN GR+ L++PGG S++R +I+ Y FVK YGAKGL
Sbjct: 3 MELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGL 62
Query: 352 TYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSAL 411
YIK+++ +K +G+ SP+ K+ N I+E I+++T AQ+GD+IF G D K IV + M AL
Sbjct: 63 AYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGAL 122
Query: 412 RIKIG 416
R+K+G
Sbjct: 123 RLKVG 127
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 120 bits (302), Expect = 4e-31
Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 13/175 (7%)
Query: 128 LYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILS----KSTPEGARDYLVPSRI 183
+ + + + L ++ K+ + F + F + I+S P+ A + + P+ +
Sbjct: 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62
Query: 184 NP-GEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSD---RQPEFTQIDCETSF 239
G L S L KQL + + + ++ R E + D EFTQ+D E
Sbjct: 63 EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER 122
Query: 240 MNEEEIRNLFEEMIRVIFYKTLNI-----KLPNPFPVIEWSTAIKLYGSDKPDMC 289
E+I L E ++ +F K F V E+S ++ +GSD+
Sbjct: 123 AKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKASQ 177
Score = 104 bits (259), Expect = 2e-25
Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 5/144 (3%)
Query: 429 NKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGW 488
K ++ + + ++ PF E + + L
Sbjct: 154 TKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYG 213
Query: 489 EIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGA-PPHGGIAFGLDRLIT 547
E+ G R + E + ++ + F L K G P G G++RL+
Sbjct: 214 EVASGGEREWEYEKIVAKIRKAGLN----EDSFRPYLEIAKAGKLKPSAGAGIGVERLVR 269
Query: 548 IMTGSKSIRDVIAFPKTQSAQCLL 571
+ G+K I +V FP+ ++
Sbjct: 270 FIVGAKHIAEVQPFPRIPGIPAVI 293
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 118 bits (297), Expect = 3e-30
Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 20/153 (13%)
Query: 410 ALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFI 469
L +G + +L W ++ ++ R+ P F
Sbjct: 172 ELGYPVGQDLSEEAERLLGEYAKERWGSDWL----------FVTRYPRSVRP------FY 215
Query: 470 ITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLK 529
E ++++DL+ G EI G RIH E + K +D + F L K
Sbjct: 216 TYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPE----AFHGYLEVFK 271
Query: 530 YGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFP 562
YG PPHGG A G +RL + G ++R AFP
Sbjct: 272 YGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304
Score = 118 bits (296), Expect = 4e-30
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 18/206 (8%)
Query: 125 YRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRIN 184
YR + LR + + L+++ + R++LD + F EI TP + ++ EG
Sbjct: 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFE 60
Query: 185 PGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQ-PEFTQIDCETSF-MNE 242
L QSPQL+KQ +MV F+R Y++ +R E+ + R E+ +D E F +E
Sbjct: 61 K--RAYLAQSPQLYKQ-IMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADE 117
Query: 243 EEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDK---PDMCIKLIFTDLTN 299
E++ L E ++ + + LN I+L G+ P +L +
Sbjct: 118 EDLMRLEEALLAEMLEEALN----------TAGDEIRLLGATWPSFPQDIPRLTHAEAKR 167
Query: 300 IMKDSDFKLFSKIANMKNGRIIGLKI 325
I+K+ + + + R++G
Sbjct: 168 ILKEELGYPVGQDLSEEAERLLGEYA 193
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 116 bits (290), Expect = 5e-29
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 5/163 (3%)
Query: 405 NNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDG 464
M+ L + I K L I +F + I P +
Sbjct: 178 ETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDE-VAEAHLIQPTFITEYPAEV 236
Query: 465 YEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGF- 523
+ + ++ I G EIG G ++DAE Q + F+ + F
Sbjct: 237 SPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFY 296
Query: 524 ---LLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPK 563
+ +L+YG PP G+ G+DR+I + T S +IRDVI FP
Sbjct: 297 DEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
Score = 114 bits (286), Expect = 1e-28
Identities = 42/216 (19%), Positives = 94/216 (43%), Gaps = 13/216 (6%)
Query: 121 TNLKYRVLYL-RYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGA--RDY 177
+ R L L ++ +R K+ +R+F+ ++ F+E+ETP++ + P GA R +
Sbjct: 4 VRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMM-QVIPGGASARPF 62
Query: 178 LVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCET 237
+ + + L +P+L+ + L+V F+R ++I + FR+E + PEFT ++
Sbjct: 63 ITHHNALDLDMY-LRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYM 121
Query: 238 SFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDL 297
++ + ++ L E + R + + L + + ++ KP + +
Sbjct: 122 AYADYHDLIELTESLFRTLAQEVLG--------TTKVTYGEHVFDFGKPFEKLTMREAIK 173
Query: 298 TNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISR 333
+ L + A IG+ + + + R
Sbjct: 174 KYRPETDMADLDNFDAAKALAESIGITVEKSWGLGR 209
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 115 bits (288), Expect = 6e-29
Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 7/189 (3%)
Query: 381 KIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFP 440
+ + A+ DI+ +E + +S + D GK + +
Sbjct: 153 NYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGK 212
Query: 441 MFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDA 500
++ + +P A + + + +A+DL G EI G R H
Sbjct: 213 YMMENENAPLYFLYQYPSEAKPFYIMKY---DNKPEICRAFDLEYRGVEISSGGQREHRH 269
Query: 501 EIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIA 560
+I + K ++ F F L + +YG PPHGG G +RLI M +IR+VI
Sbjct: 270 DILVEQIKEKGLN----PESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVIL 325
Query: 561 FPKTQSAQC 569
FP+ +
Sbjct: 326 FPRDRRRLT 334
Score = 111 bits (279), Expect = 1e-27
Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 18/197 (9%)
Query: 108 LPFQIDEKNILEV-TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPIL 166
LP K E+ T L R + LR + ++R V VR F FIEI TP +
Sbjct: 2 LPLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKI 61
Query: 167 SKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDR 226
+ EG + F +SPQL+K+++M + DR Y+I FR E+ + R
Sbjct: 62 IATATEGGTELFPMKYFEEDAFL--AESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTR 119
Query: 227 QPEFTQIDCETS--FMNEEEIRNLFEEMIRVIF----------YKTLNIKLPN---PFPV 271
+EEE+ + E ++ LN +L PFP
Sbjct: 120 HLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPR 179
Query: 272 IEWSTAIKLYGSDKPDM 288
+ + A+++ G ++
Sbjct: 180 VSYDKALEILGDLGKEI 196
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 108 bits (270), Expect = 7e-29
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
RTHY G++ E + + + L GWV+R+R+ GG+IF+DLRD GLVQ+V P Y A
Sbjct: 2 RRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASP-AYATA 60
Query: 61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSS 105
+ +R E+ ++ G V RP N L +G +E+ L++L +
Sbjct: 61 ERVRPEWVVRAKGLVRLRPEP--NPRLATGRVEVELSALEVLAEA 103
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 113 bits (284), Expect = 3e-28
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 16/213 (7%)
Query: 109 PFQIDEKNILEV-------------TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDS 155
P +++ + E T L YRV+ LR Q R++ V R++L +
Sbjct: 1 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 60
Query: 156 KKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITK 215
KKF E+ TP L + EG + + L QSPQ KQ L+VA+F+R Y+I
Sbjct: 61 KKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAY--LAQSPQFNKQQLIVADFERVYEIGP 118
Query: 216 CFRDEDLRSDRQ-PEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEW 274
FR E+ + R EFT +D E +F + V + L + + ++
Sbjct: 119 VFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRK 178
Query: 275 STAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFK 307
++ + K ++L + + +++ + +
Sbjct: 179 QYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKE 211
Score = 110 bits (275), Expect = 5e-27
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 11/156 (7%)
Query: 413 IKIGYSDFGKRNNILNNKWHPLWVINFPMFKYD-KINNNWIARHHPFTAPKDGYEDFIIT 471
++ + G ++ L + + D I + + PF D
Sbjct: 205 LRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPD-------- 256
Query: 472 NPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYG 531
+S +YD + G EI G+ RIHD + ++ K + + + YG
Sbjct: 257 PANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPE--DPGLKDYCDGFSYG 314
Query: 532 APPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSA 567
PPH G GL+R++ K+IR FP+
Sbjct: 315 CPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKR 350
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 100 bits (251), Expect = 3e-26
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYK 58
RTHY ITE+L Q + + GWV ++ GGI F+ +RD G+VQI + +++K
Sbjct: 2 YRTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFK 61
Query: 59 IAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT 107
+ +R+E + + G V P EIL ++ +LN + T
Sbjct: 62 LIPKLRSEDVVAVEGVVNFTPKAK-------LGFEILPEKIVVLNRAET 103
>d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase
subunit E, GatE, insert domain {Pyrococcus abyssi
[TaxId: 29292]}
Length = 131
Score = 99.6 bits (248), Expect = 2e-25
Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 290 IKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAK 349
IK F D+T+I +++ K+ +++ K G+++ +K+P + EI + + +
Sbjct: 6 IKEEFYDVTDIFENTKSKIIARVIK-KGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADR 64
Query: 350 GLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMS 409
Y+ F + P + + K+I + D L E+ N +
Sbjct: 65 AKKYVPG-----IFHIDELP-NYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALR 118
Query: 410 ALRIKI 415
+ +
Sbjct: 119 EVIKRA 124
>d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 120
Score = 90.4 bits (224), Expect = 3e-22
Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 294 FTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTY 353
++ + + S F++F + ++K L +P S R E+ + K + A+GL +
Sbjct: 5 LKEVGPLFRQSGFRVFQEAESVK-----ALALPKALS--RKEVAELEEVAKRHKAQGLAW 57
Query: 354 IKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRI 413
++ +G S + F + E ++ TEA+ GD + + + + A+R+
Sbjct: 58 ARVE------EGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRL 111
Query: 414 KIG 416
+
Sbjct: 112 RAA 114
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 87.4 bits (216), Expect = 4e-21
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 2 RTHYCGNITEKLLDQVISLCGWVHRKRNHGG-IIFIDLRDYTGLVQIVFDPNDI-----K 55
R + K D+ + VH R G + F+ LR L+Q + N
Sbjct: 23 RVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKN 82
Query: 56 IYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT 107
+ K A + E + + G V + N+EI ++ ++ +
Sbjct: 83 MVKWAGSLNLESIVLVRGIVKKVDEPIKSAT--VQNLEIHITKIYTISETPE 132
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 83.4 bits (206), Expect = 3e-20
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
MR ++ + Q + L G++H +R+ G I F+ LRD +G+VQ+V
Sbjct: 1 MRV-LVRDLKAHV-GQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGL-------- 50
Query: 61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT-LP 109
K+ E L++ G V G +E+ +E+++L+ ++ P
Sbjct: 51 KLPLPESALRVRGLVVENAKAP-------GGLEVQAKEVEVLSPALEPTP 93
>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase
subunit E, GatE, insert domain {Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 125
Score = 83.1 bits (205), Expect = 1e-19
Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 289 CIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGL--KIPGGFSISRNEINYYTQFVKTY 346
++ D++ + D++ ++ S ++ ++ G I R + K
Sbjct: 2 VVEDKIFDVSEVFADTESRIISSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADYAKKR 61
Query: 347 GAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNN 406
G G+ + + + + A GD + + E+ N
Sbjct: 62 GVSGIFHTD------------ELPAYGITEEEVRGLRDAVGASQGDAVVMVAHERVTAEN 109
Query: 407 FMSALRIKI 415
+ + +
Sbjct: 110 ALREVIRRA 118
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 143
Score = 47.0 bits (111), Expect = 6e-07
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
Query: 2 RTHYCGNITEKL----------LDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDP 51
R H + E+ L+ +S+ G + +R G F+ L+D G +Q+
Sbjct: 31 RDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVAR 90
Query: 52 NDIKIYKIA---KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSIT- 107
+ + K + G + +T G + I C EL++L ++
Sbjct: 91 DSLPEGVYNDQFKKWDLGDIIGARGTLFKT--QT-------GELSIHCTELRLLTKALRP 141
Query: 108 LP 109
LP
Sbjct: 142 LP 143
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 33.3 bits (75), Expect = 0.085
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 464 GYEDFIITNPEKIFSKAYDLIINGWEIGGGS 494
G E ++T+P+ + + D II GGG
Sbjct: 1 GIEASLLTDPKDVSGRTVDYII----AGGGL 27
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 30.3 bits (67), Expect = 0.74
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 469 IITNPEKIFSKAYDLIINGWEIGGGS 494
++++P K+ K YD II GGG
Sbjct: 13 LLSDPSKVAGKTYDYII----AGGGL 34
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 29.5 bits (65), Expect = 0.98
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 449 NNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSI 495
N W R DG E +I N ++ + YD I IGGG+
Sbjct: 13 NQWATRIDEILEAPDGGE--VIYNVDENDPREYDAIF----IGGGAA 53
>d1gqoa_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase
{Bacillus subtilis [TaxId: 1423]}
Length = 141
Score = 28.7 bits (64), Expect = 1.2
Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 220 EDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIK 279
D+ +D + + +F +L + + + + P ++
Sbjct: 28 TDIETDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDA 87
Query: 280 LYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPG 327
+ P ++ L+N+ +F+ S IA + G+I+GL G
Sbjct: 88 VSSISLP-----VVEVHLSNLYAREEFRHQSVIAPVAKGQIVGLGAEG 130
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21
{Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 1/80 (1%)
Query: 411 LRIKIGYSDFGKRNNILNNKWHPLW-VINFPMFKYDKINNNWIARHHPFTAPKDGYEDFI 469
L + +D GKR W ++ V+ K
Sbjct: 7 LHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLID 66
Query: 470 ITNPEKIFSKAYDLIINGWE 489
I+ E + L + E
Sbjct: 67 ISYSETKRKNVFRLTTSDCE 86
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 28.4 bits (62), Expect = 2.5
Identities = 26/206 (12%), Positives = 54/206 (26%), Gaps = 25/206 (12%)
Query: 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPIL-----------------SKSTPEGARDYLV 179
++ + + ++ + + + EI TPI K
Sbjct: 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDR 73
Query: 180 PSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETS- 238
+ P A+ +S K + Y FR E + R +F Q E
Sbjct: 74 SITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIG 133
Query: 239 -------FMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIK 291
+ ++++ +N +K + + C
Sbjct: 134 AENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSD 193
Query: 292 LIFTDLTNIMKDSDFKLFSKIANMKN 317
T+ M+ D K+ +K
Sbjct: 194 CQSRLHTDPMRILDCKVDRDKEAIKT 219
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 27.8 bits (61), Expect = 3.9
Identities = 18/159 (11%), Positives = 42/159 (26%), Gaps = 22/159 (13%)
Query: 137 KNLRLRYKVTMEVRKFLDSKKFIEIETPILSKST--------PEGARDYLVPSRINPGEF 188
+R ++ + S + + TP+L+ D P +++ E
Sbjct: 28 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETES 87
Query: 189 FALPQSP-----QLFKQLLMVANFD--RYYQITKCFRDEDLRSDR----QPEFTQIDCET 237
L ++ R ++ R E + T D
Sbjct: 88 MVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDS-H 146
Query: 238 SFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWST 276
F+ ++I+ F+ ++ + S
Sbjct: 147 IFVRPDQIKEEFKRVVN--MIIDVYKDFGFEDYSFRLSY 183
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.1 bits (56), Expect = 9.5
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 201 LLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKT 260
+++V N + E R + + ETS ++ LF+E++ + +T
Sbjct: 111 IMLVGNKCDESPSREVQSSEAEALARTWKCAFM--ETSAKLNHNVKELFQELLNLEKRRT 168
Query: 261 LNI 263
+++
Sbjct: 169 VSL 171
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.422
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,377,041
Number of extensions: 123171
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 68
Length of query: 595
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 505
Effective length of database: 1,171,896
Effective search space: 591807480
Effective search space used: 591807480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)