BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3765
(592 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|152980394|ref|YP_001352312.1| transcription termination factor Rho [Janthinobacterium sp.
Marseille]
gi|151280471|gb|ABR88881.1| Rho transcription termination factor [Janthinobacterium sp.
Marseille]
Length = 421
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/349 (87%), Positives = 331/349 (94%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP K LLLER++ +ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGESPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGLLVASPKSGKS++LQHIAHAITTNH EA+MIV+LIDERPEEVTEMQR
Sbjct: 162 IDLIAPIGKGQRGLLVASPKSGKSVMLQHIAHAITTNHPEAVMIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D+LQKIWVLRKLLY +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDQLQKIWVLRKLLYGM 390
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 98/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGKS++LQHIAHAITTNH EA+MIV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKSVMLQHIAHAITTNHPEAVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 96/115 (83%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++++ RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 18 AISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN SP++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGESPEASKHRIL 132
>gi|134093951|ref|YP_001099026.1| transcription termination factor Rho [Herminiimonas arsenicoxydans]
gi|133737854|emb|CAL60899.1| transcription termination factor (ATP-dependent helicase rho)
[Herminiimonas arsenicoxydans]
Length = 421
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 302/349 (86%), Positives = 330/349 (94%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP K LLLER++ +ENITGR+
Sbjct: 102 RTPKDGERYFALVKVDKVNGEAPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGLLVASPKSGKS+ILQHIAHAITTNH + +MIV+LIDERPEEVTEMQR
Sbjct: 162 IDLIAPIGKGQRGLLVASPKSGKSVILQHIAHAITTNHPDVVMIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D+LQKIWVLRKLLY +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDQLQKIWVLRKLLYGM 390
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/129 (68%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGKS+ILQHIAHAITTNH + +MIV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKSVILQHIAHAITTNHPDVVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 96/115 (83%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++++ RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 18 AISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN +P++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEAPEASKHRIL 132
>gi|340786064|ref|YP_004751529.1| transcription termination factor Rho [Collimonas fungivorans
Ter331]
gi|340551331|gb|AEK60706.1| Transcription termination factor Rho [Collimonas fungivorans
Ter331]
Length = 420
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/349 (85%), Positives = 330/349 (94%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP K L LER++ +ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGESPEASKHRILFENLTPLHPNKPLPLERDMRGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGKS++LQHIAHAITTNH + +MIV+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ D+LQKIWVLRKLLYS+
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPDQLQKIWVLRKLLYSM 390
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/129 (68%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGKS++LQHIAHAITTNH + +MIV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 96/115 (83%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++++ RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 18 AIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN SP++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGESPEASKHRIL 132
>gi|300310193|ref|YP_003774285.1| transcription termination factor Rho protein [Herbaspirillum
seropedicae SmR1]
gi|409404638|ref|ZP_11253117.1| transcription termination factor Rho protein [Herbaspirillum sp.
GW103]
gi|300072978|gb|ADJ62377.1| transcription termination factor Rho protein [Herbaspirillum
seropedicae SmR1]
gi|386436157|gb|EIJ48980.1| transcription termination factor Rho protein [Herbaspirillum sp.
GW103]
Length = 420
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 297/349 (85%), Positives = 330/349 (94%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP KLL LER++ +ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAP+G+GQRGLLVASPKSGKS++LQHIAHAITTNH + +MIV+LIDERPEEVTEMQR
Sbjct: 162 IDLIAPVGRGQRGLLVASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINL+KSGTRREELLI+ D+LQKIWVLRKL+Y +
Sbjct: 342 EVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKLMYDM 390
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/288 (54%), Positives = 182/288 (63%), Gaps = 83/288 (28%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++ + RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 18 AISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPK--------------NGERYFA----------- 480
DIY+SPSQIRRFNLHTG +GE+R PK NGE A
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASKHRILFENLT 137
Query: 481 ------LLKIKK-------------------------VNVASPKSGKSIILQHIAHAITT 509
LL++++ + VASPKSGKS++LQHIAHAITT
Sbjct: 138 PLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVMLQHIAHAITT 197
Query: 510 NHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------- 548
NH + +MIV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 198 NHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMK 257
Query: 549 ------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIPASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 258 KDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAAR 305
>gi|399017711|ref|ZP_10719900.1| transcription termination factor Rho [Herbaspirillum sp. CF444]
gi|398102478|gb|EJL92658.1| transcription termination factor Rho [Herbaspirillum sp. CF444]
Length = 420
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 296/349 (84%), Positives = 330/349 (94%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP K++ LER++ +ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGEAPEASKHRILFENLTPLHPNKIMQLERDMRGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIG+GQRGLLVASPKSGKS++LQHIAHAITTNH + +MIV+LIDERPEEVTEMQR
Sbjct: 162 IDLIAPIGRGQRGLLVASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINL+KSGTRREELLI+ D+LQKIWVLRKL+Y +
Sbjct: 342 EVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKLMYDM 390
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 88/129 (68%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGKS++LQHIAHAITTNH + +MIV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 110/153 (71%), Gaps = 16/153 (10%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++++ RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 18 AIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN +P++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEAPEASKHRIL---FE 134
Query: 506 AITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 538
+T H P ++ +++R +RGE
Sbjct: 135 NLTPLH-------------PNKIMQLERDMRGE 154
>gi|398836342|ref|ZP_10593679.1| transcription termination factor Rho [Herbaspirillum sp. YR522]
gi|398211976|gb|EJM98587.1| transcription termination factor Rho [Herbaspirillum sp. YR522]
Length = 420
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/349 (84%), Positives = 330/349 (94%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP K+L LER++ +ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGEPPEASKHRILFENLTPLHPNKILQLERDMRGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAP+G+GQRGLLVASPKSGKS++LQHIAHAITTNH + +MIV+LIDERPEEVTEMQR
Sbjct: 162 IDLIAPVGRGQRGLLVASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVI+EEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALIETGSRMDDVIFEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINL+KSGTRREELLI+ D+LQKIWVLRKL+Y +
Sbjct: 342 EVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKLMYDM 390
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/129 (68%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGKS++LQHIAHAITTNH + +MIV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 108/153 (70%), Gaps = 16/153 (10%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++ + RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 18 AISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASKHRIL---FE 134
Query: 506 AITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 538
+T H P ++ +++R +RGE
Sbjct: 135 NLTPLH-------------PNKILQLERDMRGE 154
>gi|415914733|ref|ZP_11553782.1| Transcription termination factor [Herbaspirillum frisingense GSF30]
gi|407761775|gb|EKF70767.1| Transcription termination factor [Herbaspirillum frisingense GSF30]
Length = 407
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 296/349 (84%), Positives = 329/349 (94%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 29 RAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 88
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP KLL LER + +ENITGRI
Sbjct: 89 RTPKDGERYFALVKVDKVNGEPPEASKHRILFENLTPLHPNKLLQLEREMRGEENITGRI 148
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAP+G+GQRGLLVASPKSGKS++LQHIAHAITTNH + +MIV+LIDERPEEVTEMQR
Sbjct: 149 IDLIAPVGRGQRGLLVASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQR 208
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 209 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 268
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVI+EEFKGTGNM
Sbjct: 269 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALIETGSRMDDVIFEEFKGTGNM 328
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINL+KSGTRREELLI+ D+LQKIWVLRKL+Y +
Sbjct: 329 EVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKLMYDM 377
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/288 (53%), Positives = 182/288 (63%), Gaps = 83/288 (28%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++ + RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 5 AISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 64
Query: 446 DIYLSPSQIRRFNLHTGILWKGE-------------IRVPK-NGERYFA----------- 480
DIY+SPSQIRRFNLHTG +GE ++V K NGE A
Sbjct: 65 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASKHRILFENLT 124
Query: 481 ------LLKIKK-------------------------VNVASPKSGKSIILQHIAHAITT 509
LL++++ + VASPKSGKS++LQHIAHAITT
Sbjct: 125 PLHPNKLLQLEREMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVMLQHIAHAITT 184
Query: 510 NHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------- 548
NH + +MIV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 185 NHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMK 244
Query: 549 ------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIPASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 245 KDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAAR 292
>gi|445499390|ref|ZP_21466245.1| transcription termination factor Rho [Janthinobacterium sp. HH01]
gi|444789385|gb|ELX10933.1| transcription termination factor Rho [Janthinobacterium sp. HH01]
Length = 420
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 297/349 (85%), Positives = 328/349 (93%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP + L LER+I ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGESPEASKHRILFENLTPLHPNEPLRLERDINGTENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DLI+PIGKGQRGLLVASPKSGKS++LQHIAHAIT+NH + +IV+LIDERPEEVTEMQR
Sbjct: 162 VDLISPIGKGQRGLLVASPKSGKSVMLQHIAHAITSNHPDVTLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D+LQKIW+LRKLLYS+
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDQLQKIWILRKLLYSM 390
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/129 (66%), Positives = 96/129 (74%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGKS++LQHIAHAIT+NH + +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKSVMLQHIAHAITSNHPDVTLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 96/115 (83%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++++ RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 18 AIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN SP++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGESPEASKHRIL 132
>gi|427400522|ref|ZP_18891760.1| transcription termination factor Rho [Massilia timonae CCUG 45783]
gi|425720347|gb|EKU83269.1| transcription termination factor Rho [Massilia timonae CCUG 45783]
Length = 420
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 294/349 (84%), Positives = 327/349 (93%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP + L LER++ ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGESPEASKHRILFENLTPLHPNEPLRLERDMNGAENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DLI+PIGKGQRGLLVASPKSGKS++LQHIAHAIT NH + +IV+LIDERPEEVTEMQR
Sbjct: 162 VDLISPIGKGQRGLLVASPKSGKSVMLQHIAHAITANHPDVTLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIVATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D+LQKIW+LRKLLYS+
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDQLQKIWILRKLLYSM 390
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/129 (66%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGKS++LQHIAHAIT NH + +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKSVMLQHIAHAITANHPDVTLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 96/115 (83%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++++ RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 18 AIGLDIDNAARLRKQELMFAILKKRAKQGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN SP++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGESPEASKHRIL 132
>gi|395764065|ref|ZP_10444734.1| transcription termination factor Rho [Janthinobacterium lividum
PAMC 25724]
Length = 420
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 297/349 (85%), Positives = 327/349 (93%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP + L LER + +ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGESPEASKHRILFENLTPLHPNEPLRLEREMNGQENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGLLVASPKSGKS+ILQHIAHAIT NH + +IV+LIDERPEEVTEMQR
Sbjct: 162 IDLIAPIGKGQRGLLVASPKSGKSVILQHIAHAITANHPDITLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVI+EEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIFEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ ++LQKIW+LRKLLYS+
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPNELQKIWILRKLLYSM 390
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/129 (67%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGKS+ILQHIAHAIT NH + +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKSVILQHIAHAITANHPDITLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 96/115 (83%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++++ RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 18 AIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN SP++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGESPEASKHRIL 132
>gi|237745453|ref|ZP_04575933.1| transcription termination factor Rho [Oxalobacter formigenes
HOxBLS]
gi|229376804|gb|EEO26895.1| transcription termination factor Rho [Oxalobacter formigenes
HOxBLS]
Length = 420
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 291/349 (83%), Positives = 326/349 (93%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+++GDG+LE+LPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVYGDGALEILPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE SK+R LF+NLTPLHP + L LER+I S+ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGAPPEASKHRMLFENLTPLHPDEPLKLERDISSQENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK++ILQH+AHAIT NH + + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVILQHMAHAITANHPDVTLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVIASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVIASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D+LQKIW+LRKLLY +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDQLQKIWILRKLLYGM 390
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/129 (65%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++ILQH+AHAIT NH + + V+LIDERPEEVTEMQRSVRGEVIASTFDEPA
Sbjct: 177 VASPKSGKTVILQHMAHAITANHPDVTLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 96/115 (83%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
+ L++++ R+RKQELMFAI KK+ K GE+++GDG+LE+LPDGFGFLRS ++YMAS+D
Sbjct: 18 ALSLDIDNAARMRKQELMFAILKKRAKAGEQVYGDGALEILPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN A P++ K +L
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGAPPEASKHRML 132
>gi|237747650|ref|ZP_04578130.1| transcription termination factor Rho [Oxalobacter formigenes
OXCC13]
gi|229379012|gb|EEO29103.1| transcription termination factor Rho [Oxalobacter formigenes
OXCC13]
Length = 420
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/349 (83%), Positives = 326/349 (93%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+++GDG+LE+LPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVYGDGALEILPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE SK+R LF+NLTPLHP + L LER I S+ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGAPPEQSKHRLLFENLTPLHPDEPLKLEREISSQENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQH+AHAITTNH + + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHMAHAITTNHPDVTLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVIASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVIASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ D+LQKIW+LRKLLY +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPDQLQKIWILRKLLYGM 390
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/129 (65%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQH+AHAITTNH + + V+LIDERPEEVTEMQRSVRGEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHMAHAITTNHPDVTLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 95/115 (82%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
+ LE+++ R+RKQELMFAI KK+ K GE+++GDG+LE+LPDGFGFLRS ++YMAS+D
Sbjct: 18 ALGLEIDNAARMRKQELMFAILKKRAKAGEQVYGDGALEILPDGFGFLRSPDASYMASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN A P+ K +L
Sbjct: 78 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGAPPEQSKHRLL 132
>gi|194290038|ref|YP_002005945.1| transcription termination factor rho [Cupriavidus taiwanensis LMG
19424]
gi|193223873|emb|CAQ69882.1| transcription termination factor Rho [Cupriavidus taiwanensis LMG
19424]
Length = 420
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 282/349 (80%), Positives = 323/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQAPEAVKNRIMFENLTPLHPNRPLTLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+K+DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ D LQKIWVLRK + +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPDILQKIWVLRKFISDM 390
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 IRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 97/112 (86%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KK+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN +P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGQAPEAVKNRIM 132
>gi|94311073|ref|YP_584283.1| transcription termination factor Rho [Cupriavidus metallidurans
CH34]
gi|430808290|ref|ZP_19435405.1| transcription termination factor Rho [Cupriavidus sp. HMR-1]
gi|93354925|gb|ABF09014.1| transcription termination factor Rho [Cupriavidus metallidurans
CH34]
gi|429499360|gb|EKZ97791.1| transcription termination factor Rho [Cupriavidus sp. HMR-1]
Length = 420
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 285/370 (77%), Positives = 328/370 (88%), Gaps = 2/370 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE KNR +F+NLTPLHP + L LER+I ++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEAVKNRIMFENLTPLHPNRPLTLERDIRAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+IAPIG+GQR LLVASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEMQR
Sbjct: 162 VDIIAPIGRGQRALLVASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+K+DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFF 360
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D LQKIW+LRK + M F
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDILQKIWILRKFISD--MDEVQAMEFI 399
Query: 361 IKRTIPVEKN 370
+ + P + N
Sbjct: 400 LDKMKPTKNN 409
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 IRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 96/112 (85%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KK+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGQPPEAVKNRIM 132
>gi|390572020|ref|ZP_10252247.1| transcription termination factor Rho [Burkholderia terrae BS001]
gi|420249384|ref|ZP_14752630.1| transcription termination factor Rho [Burkholderia sp. BT03]
gi|389936003|gb|EIM97904.1| transcription termination factor Rho [Burkholderia terrae BS001]
gi|398064003|gb|EJL55704.1| transcription termination factor Rho [Burkholderia sp. BT03]
Length = 421
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 283/349 (81%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K+LLLER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEILQKIWVLRKFIHDM 390
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 133/285 (46%), Positives = 159/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG--------FLRSQGSNY 440
LE+ S RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFG +L S Y
Sbjct: 21 LEIESANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 441 MASS----------DDI------------YLSPSQIRRFN------------------LH 460
++ S D I Y + ++ + N LH
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLH 140
Query: 461 TG--ILWKGEIRVPKN--GERYFALLKIKK----VNVASPKSGKSIILQHIAHAITTNHS 512
+L + E+R +N G + I K + VASPKSGK+++LQHIAHAI NH
Sbjct: 141 PNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 201 DVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAAR 305
>gi|186475714|ref|YP_001857184.1| transcription termination factor Rho [Burkholderia phymatum STM815]
gi|184192173|gb|ACC70138.1| transcription termination factor Rho [Burkholderia phymatum STM815]
Length = 420
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 283/349 (81%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K+LLLER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEILQKIWVLRKFIHDM 390
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/285 (46%), Positives = 159/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG--------FLRSQGSNY 440
LE+ S RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFG +L S Y
Sbjct: 21 LEIESANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 441 MASS----------DDI------------YLSPSQIRRFN------------------LH 460
++ S D I Y + ++ + N LH
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLH 140
Query: 461 TG--ILWKGEIRVPKN--GERYFALLKIKK----VNVASPKSGKSIILQHIAHAITTNHS 512
+L + E+R +N G + I K + VASPKSGK+++LQHIAHAI NH
Sbjct: 141 PNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 201 DVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAAR 305
>gi|17545906|ref|NP_519308.1| transcription termination factor Rho [Ralstonia solanacearum
GMI1000]
gi|17428201|emb|CAD14889.1| probable transcription termination factor rho (helicase) protein
[Ralstonia solanacearum GMI1000]
Length = 420
Score = 600 bits (1546), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 KAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVN + PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNAQPPEAVKNRIMFENLTPLHPNRTLTLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+I+LDSITRLARAYNTV+P S
Sbjct: 222 TVRGEVVASTFDEPAVRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D LQK+W+LRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDILQKVWILRKFIHDM 390
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KKK K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNAQPPEAVKNRIM 132
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGKVLTGGVD+NALQR
Sbjct: 237 VRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|393778465|ref|ZP_10366738.1| Rho protein [Ralstonia sp. PBA]
gi|392714503|gb|EIZ02104.1| Rho protein [Ralstonia sp. PBA]
Length = 420
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 284/349 (81%), Positives = 324/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGYPPEAVKNRIMFENLTPLHPNRPLHLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG GQRGLLVASPKSGK+++LQHIAHAI N+ +A++IV+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGFGQRGLLVASPKSGKTVMLQHIAHAIINNNPDAMLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKR+YPAINLNKSGTRREELLI+ D LQKIWVLRK + +
Sbjct: 342 EVHLERRLAEKRLYPAINLNKSGTRREELLIKPDILQKIWVLRKFISDM 390
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 96/129 (74%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI N+ +A++IV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIINNNPDAMLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 IRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 96/112 (85%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KK+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGYPPEAVKNRIM 132
>gi|421748264|ref|ZP_16185884.1| transcription termination factor Rho [Cupriavidus necator HPC(L)]
gi|409773031|gb|EKN54907.1| transcription termination factor Rho [Cupriavidus necator HPC(L)]
Length = 420
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 323/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEAVKNRIMFENLTPLHPNRPLTLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQH+AHAI NH EA + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGRGQRALLVASPKSGKTVMLQHVAHAIANNHPEADLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+K+DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQKIWVLRK + +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEILQKIWVLRKFISDM 390
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQH+AHAI NH EA + V+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHVAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 IRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 96/112 (85%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KK+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGQPPEAVKNRIM 132
>gi|83749756|ref|ZP_00946732.1| Rho [Ralstonia solanacearum UW551]
gi|207743473|ref|YP_002259865.1| transcription termination factor rho (helicase) protein [Ralstonia
solanacearum IPO1609]
gi|386333844|ref|YP_006030015.1| transcription termination factor Rho [Ralstonia solanacearum Po82]
gi|83723576|gb|EAP70778.1| Rho [Ralstonia solanacearum UW551]
gi|206594870|emb|CAQ61797.1| transcription termination factor rho (helicase) protein [Ralstonia
solanacearum IPO1609]
gi|299067239|emb|CBJ38436.1| transcription termination factor Rho [Ralstonia solanacearum CMR15]
gi|334196293|gb|AEG69478.1| transcription termination factor Rho [Ralstonia solanacearum Po82]
Length = 420
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 KAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVN + PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNTQPPEAVKNRIMFENLTPLHPNRTLTLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+I+LDSITRLARAYNTV+P S
Sbjct: 222 TVRGEVVASTFDEPAVRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D LQK+W+LRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDILQKVWILRKFIHDM 390
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KKK K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNTQPPEAVKNRIM 132
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGKVLTGGVD+NALQR
Sbjct: 237 VRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|187928124|ref|YP_001898611.1| transcription termination factor Rho [Ralstonia pickettii 12J]
gi|241662727|ref|YP_002981087.1| transcription termination factor Rho [Ralstonia pickettii 12D]
gi|309782350|ref|ZP_07677076.1| transcription termination factor Rho [Ralstonia sp. 5_7_47FAA]
gi|404378041|ref|ZP_10983141.1| transcription termination factor Rho [Ralstonia sp. 5_2_56FAA]
gi|187725014|gb|ACD26179.1| transcription termination factor Rho [Ralstonia pickettii 12J]
gi|240864754|gb|ACS62415.1| transcription termination factor Rho [Ralstonia pickettii 12D]
gi|308918886|gb|EFP64557.1| transcription termination factor Rho [Ralstonia sp. 5_7_47FAA]
gi|348615972|gb|EGY65480.1| transcription termination factor Rho [Ralstonia sp. 5_2_56FAA]
Length = 420
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 281/349 (80%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 KAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVN + PE KNR +F+NLTPLHP K L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNTQPPEAVKNRIMFENLTPLHPNKPLTLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAI TNH EA + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAIATNHPEAELFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+I+LDSITRLARAYNTV+P S
Sbjct: 222 TVRGEVVASTFDEPAVRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D LQK+W+LRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDILQKVWILRKFIHDM 390
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KKK K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNTQPPEAVKNRIM 132
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI TNH EA + V+LIDERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIATNHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGKVLTGGVD+NALQR
Sbjct: 237 VRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|300704442|ref|YP_003746045.1| transcription termination factor rho [Ralstonia solanacearum
CFBP2957]
gi|421888561|ref|ZP_16319650.1| transcription termination factor Rho [Ralstonia solanacearum K60-1]
gi|299072106|emb|CBJ43438.1| transcription termination factor Rho [Ralstonia solanacearum
CFBP2957]
gi|378966081|emb|CCF96398.1| transcription termination factor Rho [Ralstonia solanacearum K60-1]
Length = 420
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 KAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVN + PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNTQPPEAVKNRIMFENLTPLHPNRTLTLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+I+LDSITRLARAYNTV+P S
Sbjct: 222 TVRGEVVASTFDEPAVRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D LQK+W+LRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDILQKVWILRKFIHDM 390
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KKK K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNTQPPEAVKNRIM 132
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGKVLTGGVD+NALQR
Sbjct: 237 VRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|91783453|ref|YP_558659.1| transcription termination factor Rho [Burkholderia xenovorans
LB400]
gi|170692331|ref|ZP_02883494.1| transcription termination factor Rho [Burkholderia graminis C4D1M]
gi|187923814|ref|YP_001895456.1| transcription termination factor Rho [Burkholderia phytofirmans
PsJN]
gi|323526151|ref|YP_004228304.1| transcription termination factor Rho [Burkholderia sp. CCGE1001]
gi|385209755|ref|ZP_10036623.1| transcription termination factor Rho [Burkholderia sp. Ch1-1]
gi|407713471|ref|YP_006834036.1| transcription termination factor Rho [Burkholderia phenoliruptrix
BR3459a]
gi|91687407|gb|ABE30607.1| transcription termination factor Rho [Burkholderia xenovorans
LB400]
gi|170142761|gb|EDT10926.1| transcription termination factor Rho [Burkholderia graminis C4D1M]
gi|187715008|gb|ACD16232.1| transcription termination factor Rho [Burkholderia phytofirmans
PsJN]
gi|323383153|gb|ADX55244.1| transcription termination factor Rho [Burkholderia sp. CCGE1001]
gi|385182093|gb|EIF31369.1| transcription termination factor Rho [Burkholderia sp. Ch1-1]
gi|407235655|gb|AFT85854.1| transcription termination factor Rho [Burkholderia phenoliruptrix
BR3459a]
Length = 422
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 281/349 (80%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G+ IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K+LLLER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + ++ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEVLQKIWVLRKFIHDM 390
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 131/285 (45%), Positives = 159/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG--------FLRSQGSNY 440
LE+ S RLRKQELMFAI KK+ K G+ IFGDG+LEVLPDGFG +L S Y
Sbjct: 21 LEIESANRLRKQELMFAILKKRAKTGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 441 MASS----------DDI------------YLSPSQIRRFN------------------LH 460
++ S D I Y + ++ + N LH
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLH 140
Query: 461 TG--ILWKGEIRVPKN--GERYFALLKIKK----VNVASPKSGKSIILQHIAHAITTNHS 512
+L + E+R +N G + I K + VASPKSGK+++LQHIAHAI NH
Sbjct: 141 PNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ ++ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 201 DVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAAR 305
>gi|209519556|ref|ZP_03268349.1| transcription termination factor Rho [Burkholderia sp. H160]
gi|295676456|ref|YP_003604980.1| transcription termination factor Rho [Burkholderia sp. CCGE1002]
gi|209500035|gb|EEA00098.1| transcription termination factor Rho [Burkholderia sp. H160]
gi|295436299|gb|ADG15469.1| transcription termination factor Rho [Burkholderia sp. CCGE1002]
Length = 422
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 281/349 (80%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G+ IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKAGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K+LLLER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + ++ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEVLQKIWVLRKFIHDM 390
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 131/285 (45%), Positives = 159/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG--------FLRSQGSNY 440
LE+ S RLRKQELMFAI KK+ K G+ IFGDG+LEVLPDGFG +L S Y
Sbjct: 21 LEIESANRLRKQELMFAILKKRAKAGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 441 MASS----------DDI------------YLSPSQIRRFN------------------LH 460
++ S D I Y + ++ + N LH
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLH 140
Query: 461 TG--ILWKGEIRVPKN--GERYFALLKIKK----VNVASPKSGKSIILQHIAHAITTNHS 512
+L + E+R +N G + I K + VASPKSGK+++LQHIAHAI NH
Sbjct: 141 PNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ ++ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 201 DVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAAR 305
>gi|421897121|ref|ZP_16327489.1| transcription termination factor rho (helicase) protein [Ralstonia
solanacearum MolK2]
gi|206588327|emb|CAQ35290.1| transcription termination factor rho (helicase) protein [Ralstonia
solanacearum MolK2]
Length = 407
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 29 KAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 88
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVN + PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 89 RTPKDGERYFALVKVDKVNTQPPEAVKNRIMFENLTPLHPNRTLTLERDIKAEENITGRI 148
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR
Sbjct: 149 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQR 208
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+I+LDSITRLARAYNTV+P S
Sbjct: 209 TVRGEVVASTFDEPAVRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTS 268
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 269 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 328
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D LQK+W+LRK ++ +
Sbjct: 329 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDILQKVWILRKFIHDM 377
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KKK K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 8 LEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 67
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 68 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNTQPPEAVKNRIM 119
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 164 VASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPA 223
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGKVLTGGVD+NALQR
Sbjct: 224 VRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQR 283
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 284 PKRFFGAAR 292
>gi|307729574|ref|YP_003906798.1| transcription termination factor Rho [Burkholderia sp. CCGE1003]
gi|307584109|gb|ADN57507.1| transcription termination factor Rho [Burkholderia sp. CCGE1003]
Length = 422
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 281/349 (80%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G+ IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKSGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K+LLLER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + ++ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEVLQKIWVLRKFIHDM 390
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/285 (45%), Positives = 159/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG--------FLRSQGSNY 440
LE+ S RLRKQELMFAI KK+ K G+ IFGDG+LEVLPDGFG +L S Y
Sbjct: 21 LEIESANRLRKQELMFAILKKRAKSGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 441 MASS----------DDI------------YLSPSQIRRFN------------------LH 460
++ S D I Y + ++ + N LH
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLH 140
Query: 461 TG--ILWKGEIRVPKN--GERYFALLKIKK----VNVASPKSGKSIILQHIAHAITTNHS 512
+L + E+R +N G + I K + VASPKSGK+++LQHIAHAI NH
Sbjct: 141 PNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ ++ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 201 DVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKNDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAAR 305
>gi|300691834|ref|YP_003752829.1| transcription termination factor Rho [Ralstonia solanacearum PSI07]
gi|299078894|emb|CBJ51555.1| transcription termination factor Rho [Ralstonia solanacearum PSI07]
gi|344167023|emb|CCA79214.1| transcription termination factor Rho [blood disease bacterium R229]
gi|344171717|emb|CCA84337.1| transcription termination factor Rho [Ralstonia syzygii R24]
Length = 420
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/349 (79%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVN + PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNTQPPEAVKNRIMFENLTPLHPNRTLTLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+I+LDSITRLARAYNTV+P S
Sbjct: 222 TVRGEVVASTFDEPAVRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ D LQK+W+LRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPDILQKVWILRKFIHDM 390
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAIT NH EA + V+LIDERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGKVLTGGVD+NALQR
Sbjct: 237 VRHVQVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKRAKQGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNTQPPEAVKNRIM 132
>gi|339326427|ref|YP_004686120.1| transcription termination factor Rho [Cupriavidus necator N-1]
gi|338166584|gb|AEI77639.1| transcription termination factor Rho [Cupriavidus necator N-1]
Length = 420
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 322/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K+GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKMGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEAVKNRIMFENLTPLHPNRPLTLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEM R
Sbjct: 162 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMMR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+K+DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQKIW+LRK + +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEILQKIWILRKFISDM 390
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 96/112 (85%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KK+ K+GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKRAKMGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGQPPEAVKNRIM 132
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMMRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 IRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|73541806|ref|YP_296326.1| transcription termination factor Rho [Ralstonia eutropha JMP134]
gi|72119219|gb|AAZ61482.1| transcription termination factor Rho [Ralstonia eutropha JMP134]
Length = 420
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGNPPEAVKNRIMFENLTPLHPNRPLQLERDIKAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+K+DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKS TRREELLI+ D LQKIW+LRK + +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSSTRREELLIKPDILQKIWILRKFISDM 390
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 IRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 96/112 (85%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KK+ K+GE I+GDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGNPPEAVKNRIM 132
>gi|238027054|ref|YP_002911285.1| transcription termination factor Rho [Burkholderia glumae BGR1]
gi|237876248|gb|ACR28581.1| transcription termination factor Rho [Burkholderia glumae BGR1]
Length = 420
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 283/349 (81%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREE+LI+ D LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREEMLIKADILQKIWVLRKFIHDM 390
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 113/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D ++ + K R P S
Sbjct: 129 ----HKIMFENLTPLHPNKPLSLEREMRGEENVTGRIID--MIAPIGKGQRGLLVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|113868369|ref|YP_726858.1| transcription termination factor Rho [Ralstonia eutropha H16]
gi|113527145|emb|CAJ93490.1| transcription termination factor Rho [Ralstonia eutropha H16]
Length = 404
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 322/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K+GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 26 RAKMGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 85
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE KNR +F+NLTPLHP + L LER+I+++ENITGRI
Sbjct: 86 RTPKDGERYFALVKVDKVNGQPPEAVKNRIMFENLTPLHPNRPLTLERDIKAEENITGRI 145
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLVASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEM R
Sbjct: 146 IDMIAPIGRGQRALLVASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMMR 205
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+K+DV+ILLDSITRLARAYNTV+PAS
Sbjct: 206 SVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPAS 265
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 266 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 325
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQKIW+LRK + +
Sbjct: 326 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEILQKIWILRKFISDM 374
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 96/112 (85%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KK+ K+GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 5 LEIDNAQRMRKQELMFAILKKRAKMGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 64
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K+ I+
Sbjct: 65 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGQPPEAVKNRIM 116
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 161 VASPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMMRSVRGEVVASTFDEPA 220
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 221 IRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 280
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 281 PKRFFGAAR 289
>gi|161524617|ref|YP_001579629.1| transcription termination factor Rho [Burkholderia multivorans ATCC
17616]
gi|189350627|ref|YP_001946255.1| transcription termination factor Rho [Burkholderia multivorans ATCC
17616]
gi|221198099|ref|ZP_03571145.1| transcription termination factor Rho [Burkholderia multivorans
CGD2M]
gi|221208410|ref|ZP_03581413.1| transcription termination factor Rho [Burkholderia multivorans
CGD2]
gi|221215162|ref|ZP_03588129.1| transcription termination factor Rho [Burkholderia multivorans
CGD1]
gi|254252240|ref|ZP_04945558.1| Transcription termination factor [Burkholderia dolosa AUO158]
gi|330817184|ref|YP_004360889.1| transcription termination factor Rho [Burkholderia gladioli BSR3]
gi|421467595|ref|ZP_15916201.1| transcription termination factor Rho [Burkholderia multivorans ATCC
BAA-247]
gi|421478525|ref|ZP_15926276.1| transcription termination factor Rho [Burkholderia multivorans CF2]
gi|124894849|gb|EAY68729.1| Transcription termination factor [Burkholderia dolosa AUO158]
gi|160342046|gb|ABX15132.1| transcription termination factor Rho [Burkholderia multivorans ATCC
17616]
gi|189334649|dbj|BAG43719.1| transcription termination factor [Burkholderia multivorans ATCC
17616]
gi|221165098|gb|EED97577.1| transcription termination factor Rho [Burkholderia multivorans
CGD1]
gi|221171823|gb|EEE04267.1| transcription termination factor Rho [Burkholderia multivorans
CGD2]
gi|221182031|gb|EEE14432.1| transcription termination factor Rho [Burkholderia multivorans
CGD2M]
gi|327369577|gb|AEA60933.1| transcription termination factor Rho [Burkholderia gladioli BSR3]
gi|400224609|gb|EJO54831.1| transcription termination factor Rho [Burkholderia multivorans CF2]
gi|400233522|gb|EJO63060.1| transcription termination factor Rho [Burkholderia multivorans ATCC
BAA-247]
Length = 420
Score = 596 bits (1537), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/349 (81%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREE+LI+ D LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREEMLIKPDILQKIWVLRKFIHDM 390
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 113/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D ++ + K R P S
Sbjct: 129 ----HKIMFENLTPLHPNKPLSLEREMRGEENVTGRIID--MIAPIGKGQRGLLVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|413962483|ref|ZP_11401710.1| transcription termination factor Rho [Burkholderia sp. SJ98]
gi|413928315|gb|EKS67603.1| transcription termination factor Rho [Burkholderia sp. SJ98]
Length = 421
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 320/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G+ IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKGGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLPLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+I+PIGKGQRGLLVASPKSGK+++LQHIAHA+ NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMISPIGKGQRGLLVASPKSGKTVMLQHIAHAVKANHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ D LQK+WVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPDLLQKVWVLRKFIHDM 390
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHA+ NH + I+ V+LIDERPEEVTEMQRSVRGEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAVKANHPDVILFVLLIDERPEEVTEMQRSVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 ARHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 114/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K G+ IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKGGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D +S + K R P S
Sbjct: 129 ----HKIMFENLTPLHPNKPLPLEREMRGEENVTGRIID--MISPIGKGQRGLLVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
>gi|377821013|ref|YP_004977384.1| transcription termination factor Rho [Burkholderia sp. YI23]
gi|357935848|gb|AET89407.1| transcription termination factor Rho [Burkholderia sp. YI23]
Length = 421
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 279/349 (79%), Positives = 320/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G+ IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKAGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLPLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+I+PIGKGQRGLLVASPKSGK+++LQHIAHA+ NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMISPIGKGQRGLLVASPKSGKTVMLQHIAHAVKANHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVKGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ D LQK+WVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPDLLQKVWVLRKFIHDM 390
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 114/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K G+ IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKAGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D +S + K R P S
Sbjct: 129 ----HKIMFENLTPLHPNKPLPLEREMRGEENVTGRIID--MISPIGKGQRGLLVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHA+ NH + I+ V+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAVKANHPDVILFVLLIDERPEEVTEMQRSVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 ARHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|78066599|ref|YP_369368.1| transcription termination factor Rho [Burkholderia sp. 383]
gi|107028992|ref|YP_626087.1| transcription termination factor Rho [Burkholderia cenocepacia AU
1054]
gi|116689850|ref|YP_835473.1| transcription termination factor Rho [Burkholderia cenocepacia
HI2424]
gi|134295860|ref|YP_001119595.1| transcription termination factor Rho [Burkholderia vietnamiensis
G4]
gi|167587028|ref|ZP_02379416.1| transcription termination factor Rho [Burkholderia ubonensis Bu]
gi|170733189|ref|YP_001765136.1| transcription termination factor Rho [Burkholderia cenocepacia
MC0-3]
gi|206560265|ref|YP_002231029.1| transcription termination factor Rho [Burkholderia cenocepacia
J2315]
gi|254248055|ref|ZP_04941376.1| Transcription termination factor Rho [Burkholderia cenocepacia
PC184]
gi|387902374|ref|YP_006332713.1| transcription termination factor Rho [Burkholderia sp. KJ006]
gi|402566369|ref|YP_006615714.1| Rho protein [Burkholderia cepacia GG4]
gi|416958410|ref|ZP_11936060.1| transcription termination factor Rho [Burkholderia sp. TJI49]
gi|421866965|ref|ZP_16298627.1| transcription termination factor Rho [Burkholderia cenocepacia
H111]
gi|444359859|ref|ZP_21161141.1| transcription termination factor Rho [Burkholderia cenocepacia BC7]
gi|444371430|ref|ZP_21170989.1| transcription termination factor Rho [Burkholderia cenocepacia
K56-2Valvano]
gi|77967344|gb|ABB08724.1| transcription termination factor Rho [Burkholderia sp. 383]
gi|105898156|gb|ABF81114.1| transcription termination factor Rho [Burkholderia cenocepacia AU
1054]
gi|116647939|gb|ABK08580.1| transcription termination factor Rho [Burkholderia cenocepacia
HI2424]
gi|124872831|gb|EAY64547.1| Transcription termination factor Rho [Burkholderia cenocepacia
PC184]
gi|134139017|gb|ABO54760.1| transcription termination factor Rho [Burkholderia vietnamiensis
G4]
gi|169816431|gb|ACA91014.1| transcription termination factor Rho [Burkholderia cenocepacia
MC0-3]
gi|198036306|emb|CAR52202.1| transcription termination factor rho [Burkholderia cenocepacia
J2315]
gi|325522358|gb|EGD00960.1| transcription termination factor Rho [Burkholderia sp. TJI49]
gi|358073129|emb|CCE49505.1| transcription termination factor Rho [Burkholderia cenocepacia
H111]
gi|387577266|gb|AFJ85982.1| Transcription termination factor Rho [Burkholderia sp. KJ006]
gi|402247566|gb|AFQ48020.1| Rho protein [Burkholderia cepacia GG4]
gi|443595486|gb|ELT64070.1| transcription termination factor Rho [Burkholderia cenocepacia
K56-2Valvano]
gi|443601332|gb|ELT69477.1| transcription termination factor Rho [Burkholderia cenocepacia BC7]
Length = 420
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/349 (80%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREE+LI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREEMLIKPEILQKIWVLRKFIHDM 390
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 113/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D ++ + K R P S
Sbjct: 129 ----HKIMFENLTPLHPNKPLSLEREMRGEENVTGRIID--MIAPIGKGQRGLLVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|145589489|ref|YP_001156086.1| transcription termination factor Rho [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047895|gb|ABP34522.1| transcription termination factor Rho [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 420
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/349 (79%), Positives = 323/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE +FGDG+LEVLPDGFGFLRS ++YMAS DDIY+SP+QIRRFNLHTGD VEGE+
Sbjct: 42 RAKAGETVFGDGTLEVLPDGFGFLRSPEASYMASPDDIYISPAQIRRFNLHTGDSVEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ K+NG PE KNR +F+NLTPLHP +++ LER+I+++EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKINGLAPEALKNRIMFENLTPLHPNRVISLERDIKAEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+I+PIG GQRGL+VASPKSGK++++QHIAHAI N+ EAI+IV+L+DERPEEVTEMQR
Sbjct: 162 IDMISPIGYGQRGLIVASPKSGKTVMMQHIAHAIAANNPEAILIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEM KDVIILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVVASTFDEPAVRHVQVAEMVIEKAKRLVEMGKDVIILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDD+IYEEFKGTGNM
Sbjct: 282 GKVLSGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDLIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAE+RVYP+INLNKSGTRREELL++ + LQKIWVLRKLL +
Sbjct: 342 EVHLERRLAERRVYPSINLNKSGTRREELLVKAENLQKIWVLRKLLADM 390
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 96/129 (74%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAHAI N+ EAI+IV+L+DERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHAIAANNPEAILIVLLVDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVL+GGVD+NALQR
Sbjct: 237 VRHVQVAEMVIEKAKRLVEMGKDVIILLDSITRLARAYNTVVPSSGKVLSGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 94/112 (83%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + +R+RKQELMFAI KK+ K GE +FGDG+LEVLPDGFGFLRS ++YMAS DDIY
Sbjct: 21 LEIENTQRMRKQELMFAILKKRAKAGETVFGDGTLEVLPDGFGFLRSPEASYMASPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SP+QIRRFNLHTG +GE+R PK+GERYFAL+K+ K+N +P++ K+ I+
Sbjct: 81 ISPAQIRRFNLHTGDSVEGEVRTPKDGERYFALVKVDKINGLAPEALKNRIM 132
>gi|167562526|ref|ZP_02355442.1| transcription termination factor Rho [Burkholderia oklahomensis
EO147]
gi|167569712|ref|ZP_02362586.1| transcription termination factor Rho [Burkholderia oklahomensis
C6786]
Length = 420
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/349 (80%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLALEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 VDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREE+LI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREEMLIKPEILQKIWVLRKFIHDM 390
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 112/182 (61%), Gaps = 16/182 (8%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASGK 568
IM L P + ++R +RGE + ++ + K R P SGK
Sbjct: 129 ----HKIMFENLTPLHPNKPLALEREMRGEENVTGRIVDMIAPIGKGQRGLLVASPKSGK 184
Query: 569 VL 570
+
Sbjct: 185 TV 186
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|115351818|ref|YP_773657.1| transcription termination factor Rho [Burkholderia ambifaria AMMD]
gi|170701507|ref|ZP_02892460.1| transcription termination factor Rho [Burkholderia ambifaria
IOP40-10]
gi|171321032|ref|ZP_02910018.1| transcription termination factor Rho [Burkholderia ambifaria MEX-5]
gi|172060789|ref|YP_001808441.1| transcription termination factor Rho [Burkholderia ambifaria
MC40-6]
gi|115281806|gb|ABI87323.1| transcription termination factor Rho [Burkholderia ambifaria AMMD]
gi|170133595|gb|EDT01970.1| transcription termination factor Rho [Burkholderia ambifaria
IOP40-10]
gi|171093711|gb|EDT38856.1| transcription termination factor Rho [Burkholderia ambifaria MEX-5]
gi|171993306|gb|ACB64225.1| transcription termination factor Rho [Burkholderia ambifaria
MC40-6]
Length = 420
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/349 (80%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLALEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + ++ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREE+LI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREEMLIKPEILQKIWVLRKFIHDM 390
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 113/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D ++ + K R P S
Sbjct: 129 ----HKIMFENLTPLHPNKPLALEREMRGEENVTGRIID--MIAPIGKGQRGLLVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + ++ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|53719129|ref|YP_108115.1| transcription termination factor Rho [Burkholderia pseudomallei
K96243]
gi|76811459|ref|YP_333770.1| transcription termination factor Rho [Burkholderia pseudomallei
1710b]
gi|126439336|ref|YP_001059245.1| transcription termination factor Rho [Burkholderia pseudomallei
668]
gi|126452370|ref|YP_001066512.1| transcription termination factor Rho [Burkholderia pseudomallei
1106a]
gi|134277618|ref|ZP_01764333.1| transcription termination factor Rho [Burkholderia pseudomallei
305]
gi|167719242|ref|ZP_02402478.1| transcription termination factor Rho [Burkholderia pseudomallei
DM98]
gi|167738239|ref|ZP_02411013.1| transcription termination factor Rho [Burkholderia pseudomallei 14]
gi|167815429|ref|ZP_02447109.1| transcription termination factor Rho [Burkholderia pseudomallei 91]
gi|167823839|ref|ZP_02455310.1| transcription termination factor Rho [Burkholderia pseudomallei 9]
gi|167845380|ref|ZP_02470888.1| transcription termination factor Rho [Burkholderia pseudomallei
B7210]
gi|167893923|ref|ZP_02481325.1| transcription termination factor Rho [Burkholderia pseudomallei
7894]
gi|167902375|ref|ZP_02489580.1| transcription termination factor Rho [Burkholderia pseudomallei
NCTC 13177]
gi|167910615|ref|ZP_02497706.1| transcription termination factor Rho [Burkholderia pseudomallei
112]
gi|167918640|ref|ZP_02505731.1| transcription termination factor Rho [Burkholderia pseudomallei
BCC215]
gi|217421916|ref|ZP_03453420.1| transcription termination factor Rho [Burkholderia pseudomallei
576]
gi|226197357|ref|ZP_03792934.1| transcription termination factor Rho [Burkholderia pseudomallei
Pakistan 9]
gi|237812569|ref|YP_002897020.1| transcription termination factor Rho [Burkholderia pseudomallei
MSHR346]
gi|242316164|ref|ZP_04815180.1| transcription termination factor Rho [Burkholderia pseudomallei
1106b]
gi|254179531|ref|ZP_04886130.1| transcription termination factor Rho [Burkholderia pseudomallei
1655]
gi|254189077|ref|ZP_04895588.1| transcription termination factor Rho [Burkholderia pseudomallei
Pasteur 52237]
gi|254197202|ref|ZP_04903624.1| transcription termination factor Rho [Burkholderia pseudomallei
S13]
gi|254261910|ref|ZP_04952964.1| transcription termination factor Rho [Burkholderia pseudomallei
1710a]
gi|254297410|ref|ZP_04964863.1| transcription termination factor Rho [Burkholderia pseudomallei
406e]
gi|386861516|ref|YP_006274465.1| transcription termination factor Rho [Burkholderia pseudomallei
1026b]
gi|403518940|ref|YP_006653073.1| transcription termination factor Rho [Burkholderia pseudomallei
BPC006]
gi|418382979|ref|ZP_12966898.1| transcription termination factor Rho [Burkholderia pseudomallei
354a]
gi|418539368|ref|ZP_13104964.1| transcription termination factor Rho [Burkholderia pseudomallei
1026a]
gi|418540660|ref|ZP_13106185.1| transcription termination factor Rho [Burkholderia pseudomallei
1258a]
gi|418546905|ref|ZP_13112091.1| transcription termination factor Rho [Burkholderia pseudomallei
1258b]
gi|418553124|ref|ZP_13117962.1| transcription termination factor Rho [Burkholderia pseudomallei
354e]
gi|52209543|emb|CAH35496.1| transcription termination factor rho [Burkholderia pseudomallei
K96243]
gi|76580912|gb|ABA50387.1| transcription termination factor Rho [Burkholderia pseudomallei
1710b]
gi|126218829|gb|ABN82335.1| transcription termination factor Rho [Burkholderia pseudomallei
668]
gi|126226012|gb|ABN89552.1| transcription termination factor Rho [Burkholderia pseudomallei
1106a]
gi|134251268|gb|EBA51347.1| transcription termination factor Rho [Burkholderia pseudomallei
305]
gi|157807781|gb|EDO84951.1| transcription termination factor Rho [Burkholderia pseudomallei
406e]
gi|157936756|gb|EDO92426.1| transcription termination factor Rho [Burkholderia pseudomallei
Pasteur 52237]
gi|169653943|gb|EDS86636.1| transcription termination factor Rho [Burkholderia pseudomallei
S13]
gi|184210071|gb|EDU07114.1| transcription termination factor Rho [Burkholderia pseudomallei
1655]
gi|217395658|gb|EEC35676.1| transcription termination factor Rho [Burkholderia pseudomallei
576]
gi|225930736|gb|EEH26746.1| transcription termination factor Rho [Burkholderia pseudomallei
Pakistan 9]
gi|237505106|gb|ACQ97424.1| transcription termination factor Rho [Burkholderia pseudomallei
MSHR346]
gi|242139403|gb|EES25805.1| transcription termination factor Rho [Burkholderia pseudomallei
1106b]
gi|254220599|gb|EET09983.1| transcription termination factor Rho [Burkholderia pseudomallei
1710a]
gi|385345992|gb|EIF52685.1| transcription termination factor Rho [Burkholderia pseudomallei
1026a]
gi|385360794|gb|EIF66701.1| transcription termination factor Rho [Burkholderia pseudomallei
1258a]
gi|385362704|gb|EIF68509.1| transcription termination factor Rho [Burkholderia pseudomallei
1258b]
gi|385372058|gb|EIF77190.1| transcription termination factor Rho [Burkholderia pseudomallei
354e]
gi|385376818|gb|EIF81453.1| transcription termination factor Rho [Burkholderia pseudomallei
354a]
gi|385658644|gb|AFI66067.1| transcription termination factor Rho [Burkholderia pseudomallei
1026b]
gi|403074582|gb|AFR16162.1| transcription termination factor Rho [Burkholderia pseudomallei
BPC006]
Length = 420
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/349 (80%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREE+LI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREEMLIKPEILQKIWVLRKFIHDM 390
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 113/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D ++ + K R P S
Sbjct: 129 ----HKIMFENLTPLHPNKPLSLEREMRGEENVTGRIID--MIAPIGKGQRGLLVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|312796072|ref|YP_004028994.1| transcription termination factor rho [Burkholderia rhizoxinica HKI
454]
gi|312167847|emb|CBW74850.1| Transcription termination factor rho [Burkholderia rhizoxinica HKI
454]
Length = 420
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/349 (80%), Positives = 319/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER++ +ENIT RI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLSLERDVRGEENITSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI +NH + + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKSNHPDVTLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVAGEVIASTFDEPASRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEILQKIWVLRKFIHDM 390
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/182 (48%), Positives = 114/182 (62%), Gaps = 16/182 (8%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASGK 568
IM L P + ++R VRGE ++ ++ + K R P SGK
Sbjct: 129 ----HKIMFENLTPLHPNKPLSLERDVRGEENITSRIIDMIAPIGKGQRGLLVASPKSGK 184
Query: 569 VL 570
+
Sbjct: 185 TV 186
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI +NH + + V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIKSNHPDVTLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|171463384|ref|YP_001797497.1| transcription termination factor Rho [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192922|gb|ACB43883.1| transcription termination factor Rho [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 420
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 279/349 (79%), Positives = 323/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE +FGDG+LEVLPDGFGFLRS ++YMAS DDIY+SP+QIRRFNLHTGD VEGE+
Sbjct: 42 RAKAGETVFGDGTLEVLPDGFGFLRSPEASYMASPDDIYISPAQIRRFNLHTGDSVEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ K+NG PE KNR +F+NLTPLHP +++ LER I+++EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKINGLAPEALKNRIMFENLTPLHPNRVIGLERGIKAEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+I+PIG GQRGL+VASPKSGK++++QHIAHAI+ N+ EAI+IV+L+DERPEEVTEMQR
Sbjct: 162 IDMISPIGYGQRGLIVASPKSGKTVMMQHIAHAISANNPEAILIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEM KDVIILLDSITRLARAYNTVIP+S
Sbjct: 222 SVRGEVVASTFDEPAVRHVQVAEMVIEKAKRLVEMGKDVIILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDD+IYEEFKGTGNM
Sbjct: 282 GKVLSGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDLIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAE+RVYP+INLNKSGTRREELLI+ + LQKIWVLRKLL +
Sbjct: 342 EVHLERRLAERRVYPSINLNKSGTRREELLIKTENLQKIWVLRKLLADM 390
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAHAI+ N+ EAI+IV+L+DERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHAISANNPEAILIVLLVDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVL+GGVD+NALQR
Sbjct: 237 VRHVQVAEMVIEKAKRLVEMGKDVIILLDSITRLARAYNTVIPSSGKVLSGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 94/112 (83%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + +R+RKQELMFAI KK+ K GE +FGDG+LEVLPDGFGFLRS ++YMAS DDIY
Sbjct: 21 LEIENTQRMRKQELMFAILKKRAKAGETVFGDGTLEVLPDGFGFLRSPEASYMASPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SP+QIRRFNLHTG +GE+R PK+GERYFAL+K+ K+N +P++ K+ I+
Sbjct: 81 ISPAQIRRFNLHTGDSVEGEVRTPKDGERYFALVKVDKINGLAPEALKNRIM 132
>gi|83718809|ref|YP_442738.1| transcription termination factor Rho [Burkholderia thailandensis
E264]
gi|167581684|ref|ZP_02374558.1| transcription termination factor Rho [Burkholderia thailandensis
TXDOH]
gi|167619801|ref|ZP_02388432.1| transcription termination factor Rho [Burkholderia thailandensis
Bt4]
gi|167836375|ref|ZP_02463258.1| transcription termination factor Rho [Burkholderia thailandensis
MSMB43]
gi|257138950|ref|ZP_05587212.1| transcription termination factor Rho [Burkholderia thailandensis
E264]
gi|83652634|gb|ABC36697.1| transcription termination factor Rho [Burkholderia thailandensis
E264]
Length = 420
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/349 (80%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLWLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREE+LI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREEMLIKPEILQKIWVLRKFIHDM 390
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 113/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D ++ + K R P S
Sbjct: 129 ----HKIMFENLTPLHPNKPLWLEREMRGEENVTGRIID--MIAPIGKGQRGLLVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
>gi|332284683|ref|YP_004416594.1| transcription termination factor Rho [Pusillimonas sp. T7-7]
gi|330428636|gb|AEC19970.1| transcription termination factor Rho [Pusillimonas sp. T7-7]
Length = 418
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 275/349 (78%), Positives = 322/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASPDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG +PE K+R +FDNLTPLHP +++ LERNI+S+EN TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGMQPETIKHRIMFDNLTPLHPDEVMTLERNIKSEENTTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ AP+GKGQR L+VASPKSGK++++QHIAHAI+ N+ +AIMIVML+DERPEEVTEMQR
Sbjct: 162 LDIFAPMGKGQRALIVASPKSGKTVMMQHIAHAISANYPDAIMIVMLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TAL+ETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIGTALVETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ + LQK+WVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPELLQKVWVLRKFIHDM 390
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAHAI+ N+ +AIMIVML+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHAISANYPDAIMIVMLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 117/183 (63%), Gaps = 16/183 (8%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+++ RLRKQELMFAI K++ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS DDI
Sbjct: 20 ELEIDNASRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAI 507
Y+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ I H
Sbjct: 80 YISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGMQPET--------IKH-- 129
Query: 508 TTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASG 567
IM L P+EV ++R+++ E + + M K RA P SG
Sbjct: 130 ------RIMFDNLTPLHPDEVMTLERNIKSEENTTGRILDIFAPMGKGQRALIVASPKSG 183
Query: 568 KVL 570
K +
Sbjct: 184 KTV 186
>gi|422321666|ref|ZP_16402711.1| transcription termination factor Rho [Achromobacter xylosoxidans
C54]
gi|317403445|gb|EFV83956.1| transcription termination factor Rho [Achromobacter xylosoxidans
C54]
Length = 419
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/349 (79%), Positives = 323/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE K+R +F+NLTPLHP + L LER+I+S+EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGVAPEAIKHRIMFENLTPLHPNQPLRLERDIKSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ APIGKGQRGL+VASPKSGK++++QHIAHAITTN+ +A+MIV+L+DERPEEVTEMQR
Sbjct: 162 LDVFAPIGKGQRGLIVASPKSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI D LQK+WVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIAPDLLQKVWVLRKFIHDM 390
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 98/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAHAITTN+ +A+MIV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 93/112 (83%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI K++ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN +P++ K I+
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGVAPEAIKHRIM 132
>gi|163856281|ref|YP_001630579.1| transcription termination factor Rho [Bordetella petrii DSM 12804]
gi|163260009|emb|CAP42310.1| transcription termination factor Rho [Bordetella petrii]
Length = 418
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/349 (79%), Positives = 324/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE K+R +F+NLTPLHP + L LER+I+S+EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGVAPEAIKHRIMFENLTPLHPNQPLRLERDIKSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ APIGKGQRGL+VASPKSGK++++QHIAHAITTN+ +A+MIV+L+DERPEEVTEMQR
Sbjct: 162 MDIFAPIGKGQRGLIVASPKSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ + LQK+WVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPELLQKVWVLRKFIHDM 390
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 98/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAHAITTN+ +A+MIV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 93/112 (83%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI K++ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN +P++ K I+
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGVAPEAIKHRIM 132
>gi|424904640|ref|ZP_18328150.1| transcription termination factor Rho [Burkholderia thailandensis
MSMB43]
gi|390930618|gb|EIP88020.1| transcription termination factor Rho [Burkholderia thailandensis
MSMB43]
Length = 407
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/349 (80%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 29 RAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 88
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 89 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLWLEREMRGEENVTGRI 148
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 149 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 208
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTVIPAS
Sbjct: 209 SVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPAS 268
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 269 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 328
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREE+LI+ + LQKIWVLRK ++ +
Sbjct: 329 EVHLERRLAEKRVYPSINLNKSGTRREEMLIKPEILQKIWVLRKFIHDM 377
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 164 VASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 223
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 224 TRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 283
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 284 PKRFFGAAR 292
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 113/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY
Sbjct: 8 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIY 67
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 68 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 115
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D ++ + K R P S
Sbjct: 116 ----HKIMFENLTPLHPNKPLWLEREMRGEENVTGRIID--MIAPIGKGQRGLLVASPKS 169
Query: 567 GKVL 570
GK +
Sbjct: 170 GKTV 173
>gi|456063444|ref|YP_007502414.1| Transcription termination factor Rho [beta proteobacterium CB]
gi|455440741|gb|AGG33679.1| Transcription termination factor Rho [beta proteobacterium CB]
Length = 420
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 276/349 (79%), Positives = 325/349 (93%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE +FGDG+LEVLPDGFGFLRS ++YMAS DDIY+SP+QIRRFNLHTGD VEGE+
Sbjct: 42 RAKEGESVFGDGTLEVLPDGFGFLRSPDASYMASPDDIYISPAQIRRFNLHTGDSVEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ K+NG PE KNR +F+NLTPLHP +++ LER+I+++EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKINGLPPEALKNRIMFENLTPLHPNRVVQLERDIKAEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+I+PIG GQRGL+V+SPKSGK++++QHIAHAI+ N+ +AI+IV+L+DERPEEVTEMQR
Sbjct: 162 IDMISPIGYGQRGLIVSSPKSGKTVMMQHIAHAISANNPDAILIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDVIILLDSITRLARAYNTVIP+S
Sbjct: 222 SVRGEVVASTFDEPAVRHVQVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDD+IYEEFKGTGNM
Sbjct: 282 GKVLSGGVDANALQRPKRFFGAARNVEEGGSLTIIATALIETGSRMDDLIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAE+RVYP+INLNKSGTRREELL++ + LQKIWVLRKLL +
Sbjct: 342 EVHLERRLAERRVYPSINLNKSGTRREELLVKAENLQKIWVLRKLLADM 390
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+SPKSGK++++QHIAHAI+ N+ +AI+IV+L+DERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 177 VSSPKSGKTVMMQHIAHAISANNPDAILIVLLVDERPEEVTEMQRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVL+GGVD+NALQR
Sbjct: 237 VRHVQVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVIPSSGKVLSGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 103/150 (68%), Gaps = 16/150 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + +R+RKQELMFAI KK+ K GE +FGDG+LEVLPDGFGFLRS ++YMAS DDIY
Sbjct: 21 LEIENTQRMRKQELMFAILKKRAKEGESVFGDGTLEVLPDGFGFLRSPDASYMASPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SP+QIRRFNLHTG +GE+R PK+GERYFAL+K+ K+N P++ K+
Sbjct: 81 ISPAQIRRFNLHTGDSVEGEVRTPKDGERYFALVKVDKINGLPPEALKN----------- 129
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE 538
IM L P V +++R ++ E
Sbjct: 130 -----RIMFENLTPLHPNRVVQLERDIKAE 154
>gi|374366330|ref|ZP_09624411.1| transcription termination factor Rho [Cupriavidus basilensis OR16]
gi|373102114|gb|EHP43154.1| transcription termination factor Rho [Cupriavidus basilensis OR16]
Length = 445
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 279/349 (79%), Positives = 320/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K+GE IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 26 RAKLGEIIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 85
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE KNR +F+NLTPLHP + L LER I ++ENITGRI
Sbjct: 86 RTPKDGERYFALVKVDKVNGQAPEAVKNRIMFENLTPLHPNRPLTLEREIRAEENITGRI 145
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR LLV+SPKSGK+++LQHIAHAI NH EA + V+LIDERPEEVTEM R
Sbjct: 146 IDMIAPIGRGQRALLVSSPKSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMMR 205
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+K+DV+ILLDSITRLARAYNTV+PAS
Sbjct: 206 SVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPAS 265
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 266 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 325
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQK+WVLRK + +
Sbjct: 326 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPEILQKVWVLRKFISDM 374
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 160/291 (54%), Gaps = 95/291 (32%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG--------FLRSQGSNY 440
LE+++ +R+RKQELMFAI KK+ K+GE IFGDG+LEVLPDGFG +L S Y
Sbjct: 5 LEIDNAQRMRKQELMFAILKKRAKLGEIIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 64
Query: 441 MASS----------DDI------------YLSPSQIRRFN------------------LH 460
++ S D I Y + ++ + N LH
Sbjct: 65 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQAPEAVKNRIMFENLTPLH 124
Query: 461 TG--ILWKGEIRVPKN------------GERYFALLKIKKVNVASPKSGKSIILQHIAHA 506
+ + EIR +N G ALL V+SPKSGK+++LQHIAHA
Sbjct: 125 PNRPLTLEREIRAEENITGRIIDMIAPIGRGQRALL------VSSPKSGKTVMLQHIAHA 178
Query: 507 ITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------ 548
I NH EA + V+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 179 IANNHPEADLFVLLIDERPEEVTEMMRSVRGEVVASTFDEPAIRHVQVAEMVIEKAKRLV 238
Query: 549 ---------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 239 ELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAAR 289
>gi|350543737|ref|ZP_08913433.1| Transcription termination factor Rho [Candidatus Burkholderia
kirkii UZHbot1]
gi|350528486|emb|CCD35506.1| Transcription termination factor Rho [Candidatus Burkholderia
kirkii UZHbot1]
Length = 411
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/349 (79%), Positives = 319/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G+ IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 32 RAKAGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 91
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ PE SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 92 RTPKDGERYFALVKVDKVNGQPPEASKHKIMFENLTPLHPNKPLPLEREMRGEENVTGRI 151
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+I+PIGKGQRGLLVASPKSGK+++LQHIAHAI NH + ++ V+LIDERPEEVTEMQR
Sbjct: 152 IDMISPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDIVLFVLLIDERPEEVTEMQR 211
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTV+PAS
Sbjct: 212 SVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPAS 271
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 272 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 331
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ D LQK+WVLRK ++ +
Sbjct: 332 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPDVLQKVWVLRKFIHDM 380
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 114/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K G+ IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 11 LEIENANRLRKQELMFAILKKRAKAGDTIFGDGTLEVLPDGFGFLRSPETSYLASTDDIY 70
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ K
Sbjct: 71 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK------------ 118
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D +S + K R P S
Sbjct: 119 ----HKIMFENLTPLHPNKPLPLEREMRGEENVTGRIID--MISPIGKGQRGLLVASPKS 172
Query: 567 GKVL 570
GK +
Sbjct: 173 GKTV 176
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + ++ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 167 VASPKSGKTVMLQHIAHAIKQNHPDIVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 226
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 227 ARHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 286
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 287 PKRFFGAAR 295
>gi|187478870|ref|YP_786894.1| transcription termination factor Rho [Bordetella avium 197N]
gi|115423456|emb|CAJ49990.1| transcription termination factor Rho [Bordetella avium 197N]
Length = 418
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/349 (78%), Positives = 324/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE K+R +F+NLTPLHP +++ LER+I+S+EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGVTPETIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ APIGKGQRGL+VA PKSGK++++QHIAHAITTN+ +A+MIV+L+DERPEEVTEMQR
Sbjct: 162 LDVFAPIGKGQRGLIVAPPKSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ + LQK+WVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPELLQKVWVLRKFIHDM 390
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAITTN+ +A+MIV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/185 (47%), Positives = 115/185 (62%), Gaps = 22/185 (11%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI K++ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN +P++ I H
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGVTPET--------IKH--- 129
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVI---PA 565
IM L P +V ++R ++ E L V + + +I P
Sbjct: 130 -----RIMFENLTPLHPNQVMRLERDIKSE---ENLTGRILDVFAPIGKGQRGLIVAPPK 181
Query: 566 SGKVL 570
SGK +
Sbjct: 182 SGKTV 186
>gi|53723584|ref|YP_103024.1| transcription termination factor Rho [Burkholderia mallei ATCC
23344]
gi|67639668|ref|ZP_00438508.1| transcription termination factor Rho [Burkholderia mallei GB8 horse
4]
gi|121599564|ref|YP_993174.1| transcription termination factor Rho [Burkholderia mallei SAVP1]
gi|124385334|ref|YP_001026051.1| transcription termination factor Rho [Burkholderia mallei NCTC
10229]
gi|126448751|ref|YP_001080680.1| transcription termination factor Rho [Burkholderia mallei NCTC
10247]
gi|167003447|ref|ZP_02269233.1| transcription termination factor Rho [Burkholderia mallei PRL-20]
gi|254177513|ref|ZP_04884168.1| transcription termination factor Rho [Burkholderia mallei ATCC
10399]
gi|254199970|ref|ZP_04906336.1| transcription termination factor Rho [Burkholderia mallei FMH]
gi|254206303|ref|ZP_04912655.1| transcription termination factor Rho [Burkholderia mallei JHU]
gi|254358284|ref|ZP_04974557.1| transcription termination factor Rho [Burkholderia mallei
2002721280]
gi|52427007|gb|AAU47600.1| transcription termination factor Rho [Burkholderia mallei ATCC
23344]
gi|121228374|gb|ABM50892.1| transcription termination factor Rho [Burkholderia mallei SAVP1]
gi|124293354|gb|ABN02623.1| transcription termination factor Rho [Burkholderia mallei NCTC
10229]
gi|126241621|gb|ABO04714.1| transcription termination factor Rho [Burkholderia mallei NCTC
10247]
gi|147749566|gb|EDK56640.1| transcription termination factor Rho [Burkholderia mallei FMH]
gi|147753746|gb|EDK60811.1| transcription termination factor Rho [Burkholderia mallei JHU]
gi|148027411|gb|EDK85432.1| transcription termination factor Rho [Burkholderia mallei
2002721280]
gi|160698552|gb|EDP88522.1| transcription termination factor Rho [Burkholderia mallei ATCC
10399]
gi|238520256|gb|EEP83718.1| transcription termination factor Rho [Burkholderia mallei GB8 horse
4]
gi|243061010|gb|EES43196.1| transcription termination factor Rho [Burkholderia mallei PRL-20]
Length = 420
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 281/349 (80%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG+ P+ SK++ +F+NLTPLHP K L LER + +EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGQPPKASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK DV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVAGEVIASTFDEPATRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREE+LI+ + LQKIWVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREEMLIKPEILQKIWVLRKFIHDM 390
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 113/184 (61%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE IFGDG+LEVLPDGFGFLRS +Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPEMSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN PK+ K
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPKASK------------ 128
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P + ++R +RGE V D ++ + K R P S
Sbjct: 129 ----HKIMFENLTPLHPNKPLSLEREMRGEENVTGRIID--MIAPIGKGQRGLLVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + I+ V+LIDERPEEVTEMQRSV GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|293604496|ref|ZP_06686901.1| transcription termination factor rho [Achromobacter piechaudii ATCC
43553]
gi|311105318|ref|YP_003978171.1| transcription termination factor Rho [Achromobacter xylosoxidans
A8]
gi|359799012|ref|ZP_09301581.1| transcription termination factor Rho [Achromobacter arsenitoxydans
SY8]
gi|421486635|ref|ZP_15934172.1| transcription termination factor Rho [Achromobacter piechaudii HLE]
gi|423016714|ref|ZP_17007435.1| transcription termination factor Rho [Achromobacter xylosoxidans
AXX-A]
gi|292817077|gb|EFF76153.1| transcription termination factor rho [Achromobacter piechaudii ATCC
43553]
gi|310760007|gb|ADP15456.1| transcription termination factor Rho [Achromobacter xylosoxidans
A8]
gi|338780230|gb|EGP44644.1| transcription termination factor Rho [Achromobacter xylosoxidans
AXX-A]
gi|359363150|gb|EHK64878.1| transcription termination factor Rho [Achromobacter arsenitoxydans
SY8]
gi|400195095|gb|EJO28094.1| transcription termination factor Rho [Achromobacter piechaudii HLE]
Length = 419
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/349 (78%), Positives = 322/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE K+R +F+NLTPLHP + + LER+I+S+EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGVAPEAIKHRIMFENLTPLHPNRTMRLERDIKSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ APIG GQRGL+VASPKSGK++++QHIAHAITTN+ +A+MIV+L+DERPEEVTEMQR
Sbjct: 162 LDVFAPIGMGQRGLIVASPKSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI D LQK+WVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIAPDLLQKVWVLRKFIHDM 390
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 98/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAHAITTN+ +A+MIV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 93/112 (83%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI K++ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN +P++ K I+
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGVAPEAIKHRIM 132
>gi|424776129|ref|ZP_18203114.1| transcription termination factor Rho [Alcaligenes sp. HPC1271]
gi|422888589|gb|EKU30975.1| transcription termination factor Rho [Alcaligenes sp. HPC1271]
Length = 418
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/347 (79%), Positives = 323/347 (93%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+R
Sbjct: 44 KKGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRT 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFAL+K+ KVNG +PE K+R +F+NLTPLHP + + LER+I+S+ENITGRI+D
Sbjct: 104 PKDGERYFALVKVDKVNGMQPEAIKHRIMFENLTPLHPDQPMRLERDIKSEENITGRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
+ +PIGKGQR L+VASPKSGK++++QH+AHAITTN+ EAIMIV+L+DERPEEVTEMQR+V
Sbjct: 164 IFSPIGKGQRALIVASPKSGKTVMMQHMAHAITTNYPEAIMIVLLVDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVASTFDEPATRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALIETGSRMD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNLEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNSEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HLERRLAEKR+YPAINLNKSGTRREELLI+ D LQK+WVLRK ++ +
Sbjct: 344 HLERRLAEKRIYPAINLNKSGTRREELLIKPDLLQKVWVLRKFIHGM 390
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 98/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QH+AHAITTN+ EAIMIV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHMAHAITTNYPEAIMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 115/184 (62%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ RLRKQELMFAI KK K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNANRLRKQELMFAIMKKHAKKGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ I H
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGMQPEA--------IKH--- 129
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P++ ++R ++ E + D S + K RA P S
Sbjct: 130 -----RIMFENLTPLHPDQPMRLERDIKSEENITGRILD--IFSPIGKGQRALIVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
>gi|393757541|ref|ZP_10346365.1| transcription termination factor Rho [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393165233|gb|EJC65282.1| transcription termination factor Rho [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 418
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/347 (79%), Positives = 322/347 (92%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+R
Sbjct: 44 KKGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRT 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFAL+K+ KVNG +PE K+R +F+NLTPLHP + + LER+I+S+ENITGRI+D
Sbjct: 104 PKDGERYFALVKVDKVNGMQPEAIKHRIMFENLTPLHPDQPMRLERDIKSEENITGRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
+ +PIGKGQR L+VASPKSGK++++QHIAHAITTN+ EA MIV+L+DERPEEVTEMQR+V
Sbjct: 164 IFSPIGKGQRALIVASPKSGKTVMMQHIAHAITTNYPEATMIVLLVDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVASTFDEPATRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALIETGSRMD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNLEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNSEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HLERRLAEKR+YPAINLNKSGTRREELLI+ D LQK+WVLRK ++ +
Sbjct: 344 HLERRLAEKRIYPAINLNKSGTRREELLIKPDLLQKVWVLRKFIHGM 390
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAHAITTN+ EA MIV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHAITTNYPEATMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 115/184 (62%), Gaps = 20/184 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ RLRKQELMFAI KK K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNANRLRKQELMFAIMKKHAKKGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN P++ I H
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGMQPEA--------IKH--- 129
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE--VIASTFDEPALSVMCKLARAYNTVIPAS 566
IM L P++ ++R ++ E + D S + K RA P S
Sbjct: 130 -----RIMFENLTPLHPDQPMRLERDIKSEENITGRILD--IFSPIGKGQRALIVASPKS 182
Query: 567 GKVL 570
GK +
Sbjct: 183 GKTV 186
>gi|257094886|ref|YP_003168527.1| transcription termination factor Rho [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047410|gb|ACV36598.1| transcription termination factor Rho [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 418
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 276/345 (80%), Positives = 319/345 (92%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG+LE L DGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGEIR PK
Sbjct: 46 GETIFGDGTLETLSDGFGFLRSPDTSYLASTDDIYVSPSQIRRFNLHTGDTIEGEIRTPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL+K+ K+NGE PE SKN+ LF+NLTPLHP + L LER+I +ENIT RI+D+I
Sbjct: 106 DGERYFALVKVDKINGEAPEASKNKILFENLTPLHPSEHLKLERDIRGEENITSRIVDII 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQRGLLVASPKSGK++++QHIAHAITTNH + +IV+LIDERPEEVTEM RSVRG
Sbjct: 166 APIGKGQRGLLVASPKSGKTVMMQHIAHAITTNHPDVTLIVLLIDERPEEVTEMTRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQVAEMV+EKAKRL+E K+DV+ILLDSITRLARAYNTV PASGKVL
Sbjct: 226 EVVASTFDEPATRHVQVAEMVIEKAKRLIEHKRDVVILLDSITRLARAYNTVQPASGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQ+PKRFFGAARNIEEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNME+HL
Sbjct: 286 TGGVDANALQKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEIHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRVYPAIN+N+SGTRREELL++ D LQK+WVLRKLLY++
Sbjct: 346 DRRMAEKRVYPAINVNRSGTRREELLLKPDVLQKMWVLRKLLYNM 390
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAHAITTNH + +IV+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHAITTNHPDVTLIVLLIDERPEEVTEMTRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASGKVLTGGVD+NALQ+
Sbjct: 237 TRHVQVAEMVIEKAKRLIEHKRDVVILLDSITRLARAYNTVQPASGKVLTGGVDANALQK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 16/180 (8%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V RLRK EL+FA+ K + + GE IFGDG+LE L DGFGFLRS ++Y+AS+DDIY+S
Sbjct: 23 VEGANRLRKHELIFALLKNQARKGETIFGDGTLETLSDGFGFLRSPDTSYLASTDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAITTN 510
PSQIRRFNLHTG +GEIR PK+GERYFAL+K+ K+N +P++ K+ IL +T
Sbjct: 83 PSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKVDKINGEAPEASKNKIL---FENLTPL 139
Query: 511 HSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASGKVL 570
H P E +++R +RGE ++ ++ + K R P SGK +
Sbjct: 140 H-------------PSEHLKLERDIRGEENITSRIVDIIAPIGKGQRGLLVASPKSGKTV 186
>gi|33592389|ref|NP_880033.1| transcription termination factor Rho [Bordetella pertussis Tohama
I]
gi|33596498|ref|NP_884141.1| transcription termination factor Rho [Bordetella parapertussis
12822]
gi|33602207|ref|NP_889767.1| transcription termination factor Rho [Bordetella bronchiseptica
RB50]
gi|384203691|ref|YP_005589430.1| transcription termination factor Rho [Bordetella pertussis CS]
gi|408415195|ref|YP_006625902.1| transcription termination factor Rho [Bordetella pertussis 18323]
gi|410419709|ref|YP_006900158.1| transcription termination factor Rho [Bordetella bronchiseptica
MO149]
gi|410473530|ref|YP_006896811.1| transcription termination factor Rho [Bordetella parapertussis
Bpp5]
gi|412338357|ref|YP_006967112.1| transcription termination factor Rho [Bordetella bronchiseptica
253]
gi|427814169|ref|ZP_18981233.1| transcription termination factor Rho [Bordetella bronchiseptica
1289]
gi|427821360|ref|ZP_18988423.1| transcription termination factor Rho [Bordetella bronchiseptica
D445]
gi|427823449|ref|ZP_18990511.1| transcription termination factor Rho [Bordetella bronchiseptica
Bbr77]
gi|33566267|emb|CAE37178.1| transcription termination factor Rho [Bordetella parapertussis]
gi|33572034|emb|CAE41558.1| transcription termination factor Rho [Bordetella pertussis Tohama
I]
gi|33576645|emb|CAE33723.1| transcription termination factor Rho [Bordetella bronchiseptica
RB50]
gi|332381805|gb|AEE66652.1| transcription termination factor Rho [Bordetella pertussis CS]
gi|401777365|emb|CCJ62652.1| transcription termination factor Rho [Bordetella pertussis 18323]
gi|408443640|emb|CCJ50317.1| transcription termination factor Rho [Bordetella parapertussis
Bpp5]
gi|408447004|emb|CCJ58676.1| transcription termination factor Rho [Bordetella bronchiseptica
MO149]
gi|408768191|emb|CCJ52951.1| transcription termination factor Rho [Bordetella bronchiseptica
253]
gi|410565169|emb|CCN22721.1| transcription termination factor Rho [Bordetella bronchiseptica
1289]
gi|410572360|emb|CCN20635.1| transcription termination factor Rho [Bordetella bronchiseptica
D445]
gi|410588714|emb|CCN03774.1| transcription termination factor Rho [Bordetella bronchiseptica
Bbr77]
Length = 418
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 272/349 (77%), Positives = 324/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPDTSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE K+R +F+NLTPLHP +++ LER+I+S+EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGSPPEAIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ APIGKGQRGL+VA PKSGK++++QH+AHAITTN+ +A++IV+L+DERPEEVTEMQR
Sbjct: 162 LDIFAPIGKGQRGLIVAPPKSGKTVMMQHVAHAITTNYPDAVLIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYP+INLNKSGTRREELLI+ + LQK+WVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPSINLNKSGTRREELLIKPELLQKVWVLRKFIHDM 390
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QH+AHAITTN+ +A++IV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHVAHAITTNYPDAVLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 104/150 (69%), Gaps = 16/150 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI K++ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPDGFGFLRSPDTSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN + P++ I H
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGSPPEA--------IKH--- 129
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE 538
IM L P +V ++R ++ E
Sbjct: 130 -----RIMFENLTPLHPNQVMRLERDIKSE 154
>gi|452126195|ref|ZP_21938778.1| transcription termination factor Rho [Bordetella holmesii F627]
gi|452129563|ref|ZP_21942138.1| transcription termination factor Rho [Bordetella holmesii H558]
gi|451921290|gb|EMD71435.1| transcription termination factor Rho [Bordetella holmesii F627]
gi|451923198|gb|EMD73340.1| transcription termination factor Rho [Bordetella holmesii H558]
Length = 418
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 274/349 (78%), Positives = 323/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVN PE K+R +F+NLTPLHP +++ LER+I+S+EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNSVTPETIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ APIGKGQRGL+VA PKSGK++++QHIAHAITTN+ +A++IV+L+DERPEEVTEMQR
Sbjct: 162 LDIFAPIGKGQRGLIVAPPKSGKTVMMQHIAHAITTNYPDAVLIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDVIILLDSITRLARAYNTV+PAS
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLERRLAEKRVYPAINLNKSGTRREELLI+ + LQK+WVLRK ++ +
Sbjct: 342 EVHLERRLAEKRVYPAINLNKSGTRREELLIKPELLQKVWVLRKFIHDM 390
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAITTN+ +A++IV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITTNYPDAVLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 104/150 (69%), Gaps = 16/150 (10%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI K++ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN +P++ I H
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNSVTPET--------IKH--- 129
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGE 538
IM L P +V ++R ++ E
Sbjct: 130 -----RIMFENLTPLHPNQVMRLERDIKSE 154
>gi|34497040|ref|NP_901255.1| transcription termination factor Rho [Chromobacterium violaceum
ATCC 12472]
gi|81834688|sp|Q7NXP1.1|RHO_CHRVO RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|34330324|gb|AAQ59261.2| transcription termination factor rho [Chromobacterium violaceum
ATCC 12472]
Length = 418
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 274/349 (78%), Positives = 319/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFG+G+LEVLPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 QAKKGESIFGEGTLEVLPDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK++ LF+NLTPL P + LER I ++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGEAPENSKHKILFENLTPLFPTEQFKLEREIRAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLI+PIGKGQR LLVA PKSGK+++LQHIAHAIT NH EA++IV+LIDERPEEVTEMQR
Sbjct: 162 IDLISPIGKGQRALLVAPPKSGKTVMLQHIAHAITANHPEAVLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATALI+TGSRMDDVIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIVATALIDTGSRMDDVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR++PA+N+N+SGTRREELL+ D+LQ+IWVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRIFPALNINRSGTRREELLVPQDQLQRIWVLRKLLYPM 390
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 96/129 (74%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAHAIT NH EA++IV+LIDERPEEVTEMQRSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTVMLQHIAHAITANHPEAVLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 90/115 (78%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I E++ RLRKQ+L+FA+ K + K GE IFG+G+LEVLPDGFGFLRS ++Y+A D
Sbjct: 18 AISNEIDGANRLRKQDLIFALLKNQAKKGESIFGEGTLEVLPDGFGFLRSPDTSYLAGPD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ KVN +P++ K IL
Sbjct: 78 DIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVNGEAPENSKHKIL 132
>gi|349858719|gb|AEQ20381.1| transcription termination factor Rho [uncultured bacterium CSL11]
Length = 419
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 275/360 (76%), Positives = 326/360 (90%), Gaps = 3/360 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFG+G LEVLPDGFGFLRS ++Y+A +DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 QAKKGESIFGEGVLEVLPDGFGFLRSPDTSYLAGTDDIYISPSQIRRFNLHTGDTIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVN E PE +KN+ LF+NLTPL P + L+LER+I+++ENITGR+
Sbjct: 102 RTPKDGERYFALVKVDKVNSEPPENAKNKILFENLTPLFPDEPLVLERDIKAEENITGRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLV+SPKSGK+++LQH+AH+I N+ + ++IV+LIDERPEEVTEMQR
Sbjct: 162 IDIIAPIGKGQRGLLVSSPKSGKTVMLQHVAHSIAANYPDVVLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 TVRGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY---SLTMTSFTVS 357
E+HL+RR+AEKR+YPAIN+N+SGTR+EELL++ D LQK+WVLRKLLY L T F V
Sbjct: 342 EIHLDRRMAEKRIYPAINVNRSGTRKEELLLKQDVLQKVWVLRKLLYPMDELEATEFLVD 401
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+SPKSGK+++LQH+AH+I N+ + ++IV+LIDERPEEVTEMQR+VRGEV++STFDEPA
Sbjct: 177 VSSPKSGKTVMLQHVAHSIAANYPDVVLIVLLIDERPEEVTEMQRTVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 88/112 (78%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
+E+ R+RK +L+FA+ K + K GE IFG+G LEVLPDGFGFLRS ++Y+A +DDIY
Sbjct: 21 MEIEGANRMRKHDLIFAMLKAQAKKGESIFGEGVLEVLPDGFGFLRSPDTSYLAGTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ KVN P++ K+ IL
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKVDKVNSEPPENAKNKIL 132
>gi|394989357|ref|ZP_10382191.1| transcription termination factor Rho [Sulfuricella denitrificans
skB26]
gi|393791776|dbj|GAB71830.1| transcription termination factor Rho [Sulfuricella denitrificans
skB26]
Length = 418
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 275/370 (74%), Positives = 328/370 (88%), Gaps = 2/370 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+G+G+LEVLPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 QAKKGESIYGEGTLEVLPDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GERYFAL+K+ +VNGE PE SK++ LF+NLTPL P + ++LER+I+++ENITGR+
Sbjct: 102 RTPKEGERYFALVKVDQVNGEPPENSKHKILFENLTPLFPNQPMILERDIKAEENITGRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID++APIGKGQRGLLVASPKSGK+++LQHIAH+I NH E +IV+LIDERPEEVTEMQR
Sbjct: 162 IDMVAPIGKGQRGLLVASPKSGKTVMLQHIAHSIAANHPECYLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVVSSTFDEPATRHVQVAEMVMEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFF 360
E+H++R++AEKR+YPAIN+N+SGTR+EELLI+ D LQKIWVLRKLLY M + F
Sbjct: 342 EIHMDRKMAEKRLYPAINVNRSGTRKEELLIKPDILQKIWVLRKLLYP--MDDLEATEFL 399
Query: 361 IKRTIPVEKN 370
I + + N
Sbjct: 400 IDKIKATKNN 409
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAH+I NH E +IV+LIDERPEEVTEMQRSVRGEV++STFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHSIAANHPECYLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVMEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 90/124 (72%)
Query: 377 MPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQ 436
+P+ I E+ RLRKQ+L+FA+ K + K GE I+G+G+LEVLPDGFGFLRS
Sbjct: 9 LPVTELVEMAITNEIEGASRLRKQDLIFALLKNQAKKGESIYGEGTLEVLPDGFGFLRSP 68
Query: 437 GSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
++Y+A DDIY+SPSQIRRFNLHTG +GEIR PK GERYFAL+K+ +VN P++ K
Sbjct: 69 DTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKEGERYFALVKVDQVNGEPPENSK 128
Query: 497 SIIL 500
IL
Sbjct: 129 HKIL 132
>gi|291613478|ref|YP_003523635.1| transcription termination factor Rho [Sideroxydans lithotrophicus
ES-1]
gi|291583590|gb|ADE11248.1| transcription termination factor Rho [Sideroxydans lithotrophicus
ES-1]
Length = 418
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 273/349 (78%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFG+G+LEVLPDGFGFLRS ++Y+A DDIY+SPSQ+RRFNLHTGD +EGEI
Sbjct: 42 QAKKGESIFGEGTLEVLPDGFGFLRSPDTSYLAGPDDIYVSPSQVRRFNLHTGDSIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GERY AL+K+ KVNGE PE +KN+ LF+NLTPL P + + LER+I ++ENITGRI
Sbjct: 102 RTPKEGERYVALVKVDKVNGEPPENAKNKILFENLTPLFPTQHMTLERDIRAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID++APIGKGQRGLLVASPKSGK+++LQHIAH+I +N+ +AI+IV+LIDERPEEVTEM R
Sbjct: 162 IDIVAPIGKGQRGLLVASPKSGKTVMLQHIAHSIASNNPDAILIVLLIDERPEEVTEMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYNTVIP+S
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR+YPAIN+N+SGTR+EELLI+ D LQ+IWVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRIYPAINVNRSGTRKEELLIKQDLLQRIWVLRKLLYPM 390
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/284 (48%), Positives = 172/284 (60%), Gaps = 83/284 (29%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
++++ R+RKQ+L+FA+ K + K GE IFG+G+LEVLPDGFGFLRS ++Y+A DDIY+
Sbjct: 22 QIDNANRMRKQDLIFALLKNQAKKGESIFGEGTLEVLPDGFGFLRSPDTSYLAGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL--------- 500
SPSQ+RRFNLHTG +GEIR PK GERY AL+K+ KVN P++ K+ IL
Sbjct: 82 SPSQVRRFNLHTGDSIEGEIRTPKEGERYVALVKVDKVNGEPPENAKNKILFENLTPLFP 141
Query: 501 -QH----------------------------------------------IAHAITTNHSE 513
QH IAH+I +N+ +
Sbjct: 142 TQHMTLERDIRAEENITGRIIDIVAPIGKGQRGLLVASPKSGKTVMLQHIAHSIASNNPD 201
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
AI+IV+LIDERPEEVTEM R+VRGEV+ASTFDEPA
Sbjct: 202 AILIVLLIDERPEEVTEMSRTVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEHKKDVV 261
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 262 ILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|91776642|ref|YP_546398.1| transcription termination factor Rho [Methylobacillus flagellatus
KT]
gi|91710629|gb|ABE50557.1| transcription termination factor Rho [Methylobacillus flagellatus
KT]
Length = 419
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 275/349 (78%), Positives = 317/349 (90%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K G+ IFGDG+LEVL DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD ++GEI
Sbjct: 42 KAKKGDSIFGDGTLEVLQDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDTIQGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ VNGE PE SK++ LF+NLTPL P K L+LER+I S+ENITGR+
Sbjct: 102 RTPKDGERYFALVKVDSVNGEAPENSKHKILFENLTPLFPTKPLVLERDIRSEENITGRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQR LLVA PKSGK++++QHIAHAIT NH + ++IV++IDERPEEVTEM R
Sbjct: 162 IDMIAPIGKGQRALLVAPPKSGKTVMMQHIAHAITANHPDVVLIVLMIDERPEEVTEMTR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVKGEVVASTFDEPATRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TAL++TGSRMDDVIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALVDTGSRMDDVIYEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR+YPAIN+NKSGTRREELLI+ D LQKIWVLRKLLY +
Sbjct: 342 ELHLDRRMAEKRIYPAINVNKSGTRREELLIEKDVLQKIWVLRKLLYPM 390
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT NH + ++IV++IDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANHPDVVLIVLMIDERPEEVTEMTRSVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+ R+RKQ+L+FAI K K K G+ IFGDG+LEVL DGFGFLRS ++Y+A DDIY+
Sbjct: 22 EIEGASRIRKQDLIFAILKNKAKKGDSIFGDGTLEVLQDGFGFLRSPDTSYLAGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ VN +P++ K IL
Sbjct: 82 SPSQIRRFNLHTGDTIQGEIRTPKDGERYFALVKVDSVNGEAPENSKHKIL 132
>gi|334131699|ref|ZP_08505461.1| Transcription termination factor [Methyloversatilis universalis
FAM5]
gi|333443172|gb|EGK71137.1| Transcription termination factor [Methyloversatilis universalis
FAM5]
Length = 419
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 273/349 (78%), Positives = 320/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS ++Y+A +DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 RAKKGESIFGDGALEVLPDGFGFLRSPEASYLAGTDDIYVSPSQIRRFNLHTGDTIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ ++N E PE +K++ LF+NLTPLHP + L LER++ +EN T R+
Sbjct: 102 RTPKDGERYFALVKVDRINSEPPEATKHKILFENLTPLHPTEPLKLERDMRGEENTTSRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQR LLVA PK+GK++++QHIAHAIT NH EA++IV+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRALLVAPPKTGKTVMMQHIAHAITVNHPEAMLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV PAS
Sbjct: 222 SVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQ+PKRFFGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQKPKRFFGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYPAIN+N+SGTRREELL++ + LQKIWVLRKLLY++
Sbjct: 342 EIHLDRRMAEKRVYPAINVNRSGTRREELLLKPEILQKIWVLRKLLYNM 390
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK++++QHIAHAIT NH EA++IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 177 VAPPKTGKTVMMQHIAHAITVNHPEAMLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASGKVLTGGVD+NALQ+
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVQPASGKVLTGGVDANALQK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 114/182 (62%), Gaps = 16/182 (8%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
E+ RLRKQEL+FAI + + K GE IFGDG+LEVLPDGFGFLRS ++Y+A +DDIY
Sbjct: 21 FEIEGANRLRKQELVFAILRNRAKKGESIFGDGALEVLPDGFGFLRSPEASYLAGTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ ++N P++ K IL +T
Sbjct: 81 VSPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKVDRINSEPPEATKHKIL---FENLT 137
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASGK 568
H P E +++R +RGE ++ ++ + K RA P +GK
Sbjct: 138 PLH-------------PTEPLKLERDMRGEENTTSRVIDMIAPIGKGQRALLVAPPKTGK 184
Query: 569 VL 570
+
Sbjct: 185 TV 186
>gi|149927012|ref|ZP_01915270.1| transcription termination factor Rho [Limnobacter sp. MED105]
gi|149824233|gb|EDM83453.1| transcription termination factor Rho [Limnobacter sp. MED105]
Length = 418
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 275/349 (78%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKNGEQIFGDGVLEVLPDGFGFLRSPETSYLASPDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK++ LF+NLTPLHP + L LER++ +EN TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGEAPEASKHKILFENLTPLHPNQPLKLERDMRGEENNTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGLLVA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDLVAPIGKGQRGLLVAPPKSGKTVMLQHIAHAITANHPDITLIVLLIDERPEEVTEMMR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVIASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NAL RPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+H+ERR+AEKRVYPAIN+N+S TRREELLI+ D LQKIWVLR+LL+ +
Sbjct: 342 EIHMERRMAEKRVYPAININRSSTRREELLIKPDLLQKIWVLRRLLHDM 390
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 92/112 (82%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + R+RKQELMFAI KK+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS DDIY
Sbjct: 21 LEIENANRMRKQELMFAILKKRAKNGEQIFGDGVLEVLPDGFGFLRSPETSYLASPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN +P++ K IL
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEAPEASKHKIL 132
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEM RSVRGEVIASTFDEPA
Sbjct: 177 VAPPKSGKTVMLQHIAHAITANHPDITLIVLLIDERPEEVTEMMRSVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|119897320|ref|YP_932533.1| transcription termination factor Rho [Azoarcus sp. BH72]
gi|119669733|emb|CAL93646.1| transcription termination factor Rho [Azoarcus sp. BH72]
Length = 483
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/349 (77%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ + GE I+GDG+LEVLPDGFGFLRS ++Y+A +DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 106 RARKGEPIYGDGALEVLPDGFGFLRSPDTSYLAGTDDIYVSPSQIRRFNLHTGDTIEGEI 165
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ K+NG PE K++ LF+NLTPLHP++ L LER I +EN+T RI
Sbjct: 166 RTPKDGERYFALVKLDKINGRPPEECKHKILFENLTPLHPQECLKLEREIRGEENVTSRI 225
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEMQR
Sbjct: 226 IDMIAPIGKGQRGLLVAPPKSGKTVMLQHIAHAITANHPDVELIVLLIDERPEEVTEMQR 285
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMV+EKAKRL E KKDV+ILLDS+TRLARAYNTV+PAS
Sbjct: 286 SVKGEVVASTFDEPASRHVQVAEMVIEKAKRLTEHKKDVVILLDSLTRLARAYNTVVPAS 345
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQ+PKRFFGAARNIEEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNM
Sbjct: 346 GKVLTGGVDANALQKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNM 405
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYPAIN+N+SGTRREELL++ D LQKIW+LRKLLY +
Sbjct: 406 ELHLDRRMAEKRVYPAINVNRSGTRREELLMKPDVLQKIWILRKLLYGM 454
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 241 VAPPKSGKTVMLQHIAHAITANHPDVELIVLLIDERPEEVTEMQRSVKGEVVASTFDEPA 300
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQ+
Sbjct: 301 SRHVQVAEMVIEKAKRLTEHKKDVVILLDSLTRLARAYNTVVPASGKVLTGGVDANALQK 360
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 361 PKRFFGAAR 369
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 113/181 (62%), Gaps = 16/181 (8%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+ RLRKQEL+FA+ K + + GE I+GDG+LEVLPDGFGFLRS ++Y+A +DDIY+
Sbjct: 86 EIEGANRLRKQELVFALLKNRARKGEPIYGDGALEVLPDGFGFLRSPDTSYLAGTDDIYV 145
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAITT 509
SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ K+N P+ K IL +T
Sbjct: 146 SPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKLDKINGRPPEECKHKIL---FENLTP 202
Query: 510 NHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASGKV 569
H P+E +++R +RGE ++ ++ + K R P SGK
Sbjct: 203 LH-------------PQECLKLEREIRGEENVTSRIIDMIAPIGKGQRGLLVAPPKSGKT 249
Query: 570 L 570
+
Sbjct: 250 V 250
>gi|224825639|ref|ZP_03698743.1| transcription termination factor Rho [Pseudogulbenkiania
ferrooxidans 2002]
gi|347540803|ref|YP_004848228.1| transcription termination factor Rho [Pseudogulbenkiania sp. NH8B]
gi|224601863|gb|EEG08042.1| transcription termination factor Rho [Pseudogulbenkiania
ferrooxidans 2002]
gi|345643981|dbj|BAK77814.1| transcription termination factor Rho [Pseudogulbenkiania sp. NH8B]
Length = 418
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 277/349 (79%), Positives = 319/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS S+Y+A DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 QAKKGESIFGDGTLEVLPDGFGFLRSPDSSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PE +K++ LF+NLTPL P + L+LER+I ++ENIT R+
Sbjct: 102 RTPKDGERYFALVKVDKVNGGPPENAKHKILFENLTPLFPTERLVLERDIRAEENITSRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGLLVA PKSGK+++LQ++AHAIT NH E +IV+LIDERPEEVTEM R
Sbjct: 162 IDLIAPIGKGQRGLLVAPPKSGKTVMLQNLAHAITANHPEVELIVLLIDERPEEVTEMTR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 222 SVRGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVDSNALQRPKRFFGAARN+EEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDSNALQRPKRFFGAARNVEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR++PAIN+N+SGTRREELLI D+LQ+IWVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRIFPAININRSGTRREELLIPQDQLQRIWVLRKLLYPM 390
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQ++AHAIT NH E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTVMLQNLAHAITANHPEVELIVLLIDERPEEVTEMTRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVDSNALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDSNALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 93/124 (75%)
Query: 377 MPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQ 436
+P+ + I E++ RLRKQ+L+FA+ K + K GE IFGDG+LEVLPDGFGFLRS
Sbjct: 9 LPVTELVEKAIANEIDGANRLRKQDLIFALLKNQAKKGESIFGDGTLEVLPDGFGFLRSP 68
Query: 437 GSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
S+Y+A DDIY+SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ KVN P++ K
Sbjct: 69 DSSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVNGGPPENAK 128
Query: 497 SIIL 500
IL
Sbjct: 129 HKIL 132
>gi|358638127|dbj|BAL25424.1| transcription termination factor [Azoarcus sp. KH32C]
Length = 419
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/349 (77%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG+LEVLPDGFGFLRS +Y+A +DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 RAKKGEPIYGDGALEVLPDGFGFLRSPDISYLAGTDDIYVSPSQIRRFNLHTGDTIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ K+NGE PE K++ LF+NLTPLHP + L LER+I +EN+T RI
Sbjct: 102 RTPKDGERYFALVKLDKINGEAPENCKHKILFENLTPLHPNECLKLERDIRGEENVTSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+IAPIGKGQRGLLVA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEMQR
Sbjct: 162 VDMIAPIGKGQRGLLVAPPKSGKTVMLQHIAHAITANHPDVSLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMV+EKAKRL E KKDV+ILLDS+TRLARAYNTV+PAS
Sbjct: 222 SVKGEVVASTFDEPASRHVQVAEMVIEKAKRLTEHKKDVVILLDSLTRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQ+PKRFFGAARN+EEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQKPKRFFGAARNLEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYPAIN+N+SGTRREELL++ D LQK+WVLRKLLY +
Sbjct: 342 ELHLDRRMAEKRVYPAINVNRSGTRREELLMKADVLQKVWVLRKLLYGM 390
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVMLQHIAHAITANHPDVSLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQ+
Sbjct: 237 SRHVQVAEMVIEKAKRLTEHKKDVVILLDSLTRLARAYNTVVPASGKVLTGGVDANALQK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 113/181 (62%), Gaps = 16/181 (8%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+ RLRKQEL+FA+ K + K GE I+GDG+LEVLPDGFGFLRS +Y+A +DDIY+
Sbjct: 22 EIEGANRLRKQELVFALLKNRAKKGEPIYGDGALEVLPDGFGFLRSPDISYLAGTDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAITT 509
SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ K+N +P++ K IL +T
Sbjct: 82 SPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKLDKINGEAPENCKHKIL---FENLTP 138
Query: 510 NHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASGKV 569
H P E +++R +RGE ++ ++ + K R P SGK
Sbjct: 139 LH-------------PNECLKLERDIRGEENVTSRIVDMIAPIGKGQRGLLVAPPKSGKT 185
Query: 570 L 570
+
Sbjct: 186 V 186
>gi|348618113|ref|ZP_08884645.1| transcription termination factor (ATP-dependent helicase rho)
[Candidatus Glomeribacter gigasporarum BEG34]
gi|347816625|emb|CCD29311.1| transcription termination factor (ATP-dependent helicase rho)
[Candidatus Glomeribacter gigasporarum BEG34]
Length = 420
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/349 (78%), Positives = 316/349 (90%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ + GE IFGDG+LEVLPDGFGFLRS ++Y+AS DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RARTGETIFGDGTLEVLPDGFGFLRSPETSYLASPDDIYISPSQIRRFNLHTGDTIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ K+NG PE SK++ +F+NLTPLHP L+LER++ +EN TGRI
Sbjct: 102 RTPKDGERYFALVKVDKINGFPPEASKHKIMFENLTPLHPDTPLILERDLRGEENNTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGL+VASPKSGK++I QHIAHAITTN + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLIVASPKSGKTVIQQHIAHAITTNSPGVTLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEVIASTFDEPA RHVQVAEMV+EKAKRLVEMK+DV+ILLDSITRLARAYNTVIP S
Sbjct: 222 SVKGEVIASTFDEPALRHVQVAEMVIEKAKRLVEMKRDVVILLDSITRLARAYNTVIPTS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKR FGAARNIEEGGSLT+I TA+IETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRIFGAARNIEEGGSLTMIGTAMIETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHLER+LAEKRVYPAINLNKSGTRREELLI+ D LQK+W+LRKL++ +
Sbjct: 342 EVHLERKLAEKRVYPAINLNKSGTRREELLIKPDILQKVWILRKLIHDM 390
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 156/285 (54%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF------GFLRSQGSNY 440
LE+ S RLRKQELMFAI KK+ + GE IFGDG+LEVLPD GF +L S Y
Sbjct: 21 LEIESANRLRKQELMFAILKKRARTGETIFGDGTLEVLPDGFGFLRSPETSYLASPDDIY 80
Query: 441 MASS----------DDI------------YLSPSQIRRFN------------------LH 460
++ S D I Y + ++ + N LH
Sbjct: 81 ISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKINGFPPEASKHKIMFENLTPLH 140
Query: 461 --TGILWKGEIRVPKN--GERYFALLKIKK----VNVASPKSGKSIILQHIAHAITTNHS 512
T ++ + ++R +N G + I K + VASPKSGK++I QHIAHAITTN
Sbjct: 141 PDTPLILERDLRGEENNTGRIIDMIAPIGKGQRGLIVASPKSGKTVIQQHIAHAITTNSP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL----------------------- 549
+ V+LIDERPEEVTEMQRSV+GEVIASTFDEPAL
Sbjct: 201 GVTLFVLLIDERPEEVTEMQRSVKGEVIASTFDEPALRHVQVAEMVIEKAKRLVEMKRDV 260
Query: 550 ----SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYNTVIP SGKVLTGGVD+NALQRPKR FGAAR
Sbjct: 261 VILLDSITRLARAYNTVIPTSGKVLTGGVDANALQRPKRIFGAAR 305
>gi|226940611|ref|YP_002795685.1| transcription termination factor Rho [Laribacter hongkongensis
HLHK9]
gi|226715538|gb|ACO74676.1| Rho [Laribacter hongkongensis HLHK9]
Length = 418
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 272/349 (77%), Positives = 319/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG+LEVLPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 QAKKGESIFGDGTLEVLPDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GERYFAL+K+ ++N E PE SKN+ LF+NLTPLHP + L LER+I ++ENITGRI
Sbjct: 102 RTPKEGERYFALVKVDRINSELPEKSKNKILFENLTPLHPTERLTLERDIRAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVA PKSGK+++LQ+IAHAIT NH + ++IV+LIDERPEEVTEM R
Sbjct: 162 IDMIAPIGKGQRGLLVAPPKSGKTVMLQNIAHAITANHPDVVLIVLLIDERPEEVTEMTR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIA+ALI+TGSRMDDVIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIASALIDTGSRMDDVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR++PAIN+N+SGTRREELLI ++LQ++WVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRIFPAININRSGTRREELLIPQEQLQRMWVLRKLLYPM 390
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 146/284 (51%), Gaps = 83/284 (29%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGF 432
++ RLRKQ+L+FA+ K + K GE I FG D S PD
Sbjct: 22 DIEGANRLRKQDLIFALLKGQAKKGESIFGDGTLEVLPDGFGFLRSPDTSYLAGPDDIYV 81
Query: 433 LRSQGSNY-MASSDDI------------YLSPSQIRRFN------------------LHT 461
SQ + + + D I Y + ++ R N LH
Sbjct: 82 SPSQIRRFNLHTGDSIEGEIRTPKEGERYFALVKVDRINSELPEKSKNKILFENLTPLHP 141
Query: 462 G--ILWKGEIRVPKN--GERYFALLKIKK----VNVASPKSGKSIILQHIAHAITTNHSE 513
+ + +IR +N G + I K + VA PKSGK+++LQ+IAHAIT NH +
Sbjct: 142 TERLTLERDIRAEENITGRIIDMIAPIGKGQRGLLVAPPKSGKTVMLQNIAHAITANHPD 201
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
++IV+LIDERPEEVTEM R+VRGEV+ASTFDEPA
Sbjct: 202 VVLIVLLIDERPEEVTEMTRTVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVV 261
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 262 ILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|253997393|ref|YP_003049457.1| transcription termination factor Rho [Methylotenera mobilis JLW8]
gi|253984072|gb|ACT48930.1| transcription termination factor Rho [Methylotenera mobilis JLW8]
Length = 419
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 276/349 (79%), Positives = 317/349 (90%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE IFGDG+LEVL DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD ++GEI
Sbjct: 42 KAKKGESIFGDGTLEVLQDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIQGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R+PK+GERYFAL+K+ VNGE PE +K++ LF+NLTPL P L LER+I+ ENIT R+
Sbjct: 102 RIPKDGERYFALVKVDMVNGEAPENTKHKILFENLTPLFPTIPLTLERDIKGAENITSRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVASPKSGK++++Q+IAHAIT NH + I+IV+LIDERPEEVTEM R
Sbjct: 162 IDMIAPIGKGQRGLLVASPKSGKTVMMQNIAHAITANHPDVILIVLLIDERPEEVTEMTR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYNTVIP+S
Sbjct: 222 SVKGEVVASTFDEPATRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR YPAIN+NKSGTRREELLI+ D LQKIWVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRQYPAINVNKSGTRREELLIEKDVLQKIWVLRKLLYPM 390
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++Q+IAHAIT NH + I+IV+LIDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQNIAHAITANHPDVILIVLLIDERPEEVTEMTRSVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 89/111 (80%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+++ R+RKQ+L+FAI K K K GE IFGDG+LEVL DGFGFLRS ++Y+A DDIY+
Sbjct: 22 EIDNASRMRKQDLIFAILKNKAKKGESIFGDGTLEVLQDGFGFLRSPDTSYLAGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG +GEIR+PK+GERYFAL+K+ VN +P++ K IL
Sbjct: 82 SPSQIRRFNLHTGDSIQGEIRIPKDGERYFALVKVDMVNGEAPENTKHKIL 132
>gi|372489826|ref|YP_005029391.1| transcription termination factor Rho [Dechlorosoma suillum PS]
gi|359356379|gb|AEV27550.1| transcription termination factor Rho [Dechlorosoma suillum PS]
Length = 420
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/347 (78%), Positives = 315/347 (90%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGEIR
Sbjct: 44 KKGESIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYVSPSQIRRFNLHTGDTIEGEIRT 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFAL+K+ K+N E PE K++ LF+NLTPLHP L LER I ++EN T R+ID
Sbjct: 104 PKDGERYFALVKVDKINYESPEACKSKILFENLTPLHPSSHLHLERPIRAEENTTSRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
+IAPIGKGQRGLLVA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEMQR+V
Sbjct: 164 MIAPIGKGQRGLLVAPPKSGKTVMLQHIAHAITANHPDVQLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHV VAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV PASGK
Sbjct: 224 RGEVVASTFDEPATRHVIVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVQPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQ+PKRFFGAARNIEEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQKPKRFFGAARNIEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR+YPAIN+N+SGTRREELL++ D LQK+WVLRKLLY++
Sbjct: 344 HLDRRMAEKRIYPAINVNRSGTRREELLLKPDVLQKMWVLRKLLYNM 390
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 90/111 (81%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+ RLRKQEL+FA+ KK K GE IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+
Sbjct: 22 EIEGANRLRKQELIFALLKKHAKKGESIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ K+N SP++ KS IL
Sbjct: 82 SPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKVDKINYESPEACKSKIL 132
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVMLQHIAHAITANHPDVQLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASGKVLTGGVD+NALQ+
Sbjct: 237 TRHVIVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVQPASGKVLTGGVDANALQK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|254000027|ref|YP_003052090.1| transcription termination factor Rho [Methylovorus glucosetrophus
SIP3-4]
gi|313202003|ref|YP_004040661.1| transcription termination factor rho [Methylovorus sp. MP688]
gi|253986706|gb|ACT51563.1| transcription termination factor Rho [Methylovorus glucosetrophus
SIP3-4]
gi|312441319|gb|ADQ85425.1| transcription termination factor Rho [Methylovorus sp. MP688]
Length = 419
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/349 (78%), Positives = 315/349 (90%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K G+ IFGDG+LEVL DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD + GEI
Sbjct: 42 KAKKGDSIFGDGTLEVLQDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIMGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ VNGE PE +K++ LF+NLTPL P K L+LER+I +EN+TGR+
Sbjct: 102 RTPKDGERYFALVKVDSVNGEAPENTKHKILFENLTPLFPTKPLVLERDIRGEENVTGRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQR LLVA PKSGK++++QHIAHAIT NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDMIAPIGKGQRALLVAPPKSGKTVMMQHIAHAITANHPDVSLIVLLIDERPEEVTEMTR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVKGEVVASTFDEPATRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR YPAIN+NKSGTRREELLI+ D LQKIWVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRQYPAINVNKSGTRREELLIEKDILQKIWVLRKLLYPM 390
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT NH + +IV+LIDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANHPDVSLIVLLIDERPEEVTEMTRSVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 85/111 (76%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+ R+RKQ+L+FA+ K K K G+ IFGDG+LEVL DGFGFLRS ++Y+A DDIY+
Sbjct: 22 EIEGASRMRKQDLIFALLKNKAKKGDSIFGDGTLEVLQDGFGFLRSPDTSYLAGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG GEIR PK+GERYFAL+K+ VN +P++ K IL
Sbjct: 82 SPSQIRRFNLHTGDSIMGEIRTPKDGERYFALVKVDSVNGEAPENTKHKIL 132
>gi|379335267|gb|AFD03252.1| transcription termination factor Rho [uncultured bacterium W4-87b]
Length = 419
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/345 (79%), Positives = 317/345 (91%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFG+G+LEVL DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD ++GEIR PK
Sbjct: 46 GESIFGEGTLEVLQDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIDGEIRTPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
NGERYFAL+K+ KVN E PE SK++ LF+NLTPL P + LLLER+I+++EN+T RIIDLI
Sbjct: 106 NGERYFALVKVDKVNNEPPENSKHKILFENLTPLFPTQRLLLERDIKAEENVTSRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIG GQRGLLV+SPKSGK+++LQHIAHAI +NH E I++V+LIDERPEEVTEM RSVRG
Sbjct: 166 APIGMGQRGLLVSSPKSGKTVMLQHIAHAIASNHPEVILMVLLIDERPEEVTEMIRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIPASGKVL
Sbjct: 226 EVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNME+HL
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKR YPAIN+N+SGTR+EELLI+ D LQKIWVLRKLLY +
Sbjct: 346 DRRMAEKRTYPAINVNRSGTRKEELLIKPDVLQKIWVLRKLLYPM 390
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+SPKSGK+++LQHIAHAI +NH E I++V+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VSSPKSGKTVMLQHIAHAIASNHPEVILMVLLIDERPEEVTEMIRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 VRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 85/111 (76%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
+++ RLRKQ+L+FA+ K + GE IFG+G+LEVL DGFGFLRS ++Y+A DDIY+
Sbjct: 22 QIDGANRLRKQDLIFAVLKNHARKGESIFGEGTLEVLQDGFGFLRSPDTSYLAGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG GEIR PKNGERYFAL+K+ KVN P++ K IL
Sbjct: 82 SPSQIRRFNLHTGDSIDGEIRTPKNGERYFALVKVDKVNNEPPENSKHKIL 132
>gi|319779374|ref|YP_004130287.1| transcription termination factor Rho [Taylorella equigenitalis
MCE9]
gi|397661612|ref|YP_006502312.1| transcription termination factor Rho [Taylorella equigenitalis ATCC
35865]
gi|317109398|gb|ADU92144.1| Transcription termination factor Rho [Taylorella equigenitalis
MCE9]
gi|394349791|gb|AFN35705.1| transcription termination factor Rho [Taylorella equigenitalis ATCC
35865]
gi|399115006|emb|CCG17802.1| transcription termination factor Rho [Taylorella equigenitalis
14/56]
Length = 418
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/349 (77%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS S+Y+AS+DDIY+SPSQ+R+FNLHTGD +EG++
Sbjct: 42 RAKNGEQIFGDGVLEVLPDGFGFLRSPYSSYLASTDDIYISPSQMRKFNLHTGDHIEGQV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
RVPK+GERYFAL+K++KVNG +PE ++R +F+NLTPLHP + L LER+I S+EN TGRI
Sbjct: 102 RVPKDGERYFALVKVEKVNGLEPEKVQHRIMFENLTPLHPDEPLRLERDIRSEENYTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ APIGKGQR L+VASPKSGK++++QHIAH+IT N+ EA +IV+L+DERPEEVTEMQR
Sbjct: 162 LDIFAPIGKGQRALIVASPKSGKTVMMQHIAHSITANYPEATLIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERRLAEKRVYPAINLNKSGTRREELL++ + LQK WVLRK ++ +
Sbjct: 342 EIHLERRLAEKRVYPAINLNKSGTRREELLMRPEDLQKTWVLRKFIHDM 390
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 96/129 (74%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAH+IT N+ EA +IV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHSITANYPEATLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 116/188 (61%), Gaps = 22/188 (11%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
+ LE+ + R RKQELMF I KK+ K GE+IFGDG LEVLPDGFGFLRS S+Y+AS+D
Sbjct: 18 ALGLEIENANRFRKQELMFQIMKKRAKNGEQIFGDGVLEVLPDGFGFLRSPYSSYLASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
DIY+SPSQ+R+FNLHTG +G++RVPK+GERYFAL+K++KVN P+ +QH
Sbjct: 78 DIYISPSQMRKFNLHTGDHIEGQVRVPKDGERYFALVKVEKVNGLEPEK-----VQH--- 129
Query: 506 AITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVI-- 563
IM L P+E ++R +R E + L + + + +I
Sbjct: 130 --------RIMFENLTPLHPDEPLRLERDIRSE---ENYTGRILDIFAPIGKGQRALIVA 178
Query: 564 -PASGKVL 570
P SGK +
Sbjct: 179 SPKSGKTV 186
>gi|348589998|ref|YP_004874460.1| transcription termination factor Rho [Taylorella asinigenitalis
MCE3]
gi|347973902|gb|AEP36437.1| Transcription termination factor Rho [Taylorella asinigenitalis
MCE3]
gi|399116871|emb|CCG19682.1| transcription termination factor Rho [Taylorella asinigenitalis
14/45]
Length = 418
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/349 (77%), Positives = 320/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS S+Y+AS+DDIY+SPSQ+R+FNLHTGD +EG++
Sbjct: 42 RAKNGEQIFGDGVLEVLPDGFGFLRSPYSSYLASTDDIYISPSQMRKFNLHTGDHIEGQV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
RVPK+GERYFAL+K++KVNG PE ++R +F+NLTPLHP + L LER+I S+EN TGRI
Sbjct: 102 RVPKDGERYFALVKVEKVNGLDPEKVQHRIMFENLTPLHPDEPLKLERDIRSEENYTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ APIGKGQR L+VASPKSGK++++QHIAH+IT N+ EA +IV+L+DERPEEVTEMQR
Sbjct: 162 LDIFAPIGKGQRALIVASPKSGKTVMMQHIAHSITANYPEATLIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE+KKDV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 TVRGEVVASTFDEPATRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERRLAEKRVYPAINLNKSGTRREELL++ + LQK WVLRK ++ +
Sbjct: 342 EIHLERRLAEKRVYPAINLNKSGTRREELLMRPEDLQKTWVLRKFIHDM 390
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 96/129 (74%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAH+IT N+ EA +IV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQHIAHSITANYPEATLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 116/185 (62%), Gaps = 22/185 (11%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + R RKQELMF I KK+ K GE+IFGDG LEVLPDGFGFLRS S+Y+AS+DDIY
Sbjct: 21 LEIENANRFRKQELMFQIMKKRAKNGEQIFGDGVLEVLPDGFGFLRSPYSSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQ+R+FNLHTG +G++RVPK+GERYFAL+K++KVN P+ +QH
Sbjct: 81 ISPSQMRKFNLHTGDHIEGQVRVPKDGERYFALVKVEKVNGLDPEK-----VQH------ 129
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVI---PA 565
IM L P+E +++R +R E + L + + + +I P
Sbjct: 130 -----RIMFENLTPLHPDEPLKLERDIRSE---ENYTGRILDIFAPIGKGQRALIVASPK 181
Query: 566 SGKVL 570
SGK +
Sbjct: 182 SGKTV 186
>gi|297539612|ref|YP_003675381.1| transcription termination factor Rho [Methylotenera versatilis 301]
gi|297258959|gb|ADI30804.1| transcription termination factor Rho [Methylotenera versatilis 301]
Length = 419
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/349 (78%), Positives = 317/349 (90%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE IFGDG+LEVL DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD ++GEI
Sbjct: 42 KAKKGESIFGDGTLEVLQDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIQGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R+PK+GERYFAL+K+ VNGE PE +K++ LF+NLTPL P L LER+I+ ENIT R+
Sbjct: 102 RIPKDGERYFALVKVDVVNGEAPENTKHKILFENLTPLFPTIPLTLERDIKGVENITSRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQRGLLVASPKSGK++++Q+IAHAIT NH + I+IV+LIDERPEEVTEM R
Sbjct: 162 IDMIAPIGRGQRGLLVASPKSGKTVMMQNIAHAITANHPDVILIVLLIDERPEEVTEMTR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYNTVIP+S
Sbjct: 222 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+R++AEKR YPAIN+NKSGTRREELLI+ D LQKIWVLRKLLY +
Sbjct: 342 EIHLDRKMAEKRQYPAINVNKSGTRREELLIEKDVLQKIWVLRKLLYPM 390
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++Q+IAHAIT NH + I+IV+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQNIAHAITANHPDVILIVLLIDERPEEVTEMTRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 89/111 (80%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+++ R+RKQ+L+FAI K K K GE IFGDG+LEVL DGFGFLRS ++Y+A DDIY+
Sbjct: 22 EIDNASRMRKQDLIFAILKHKAKKGESIFGDGTLEVLQDGFGFLRSPDTSYLAGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG +GEIR+PK+GERYFAL+K+ VN +P++ K IL
Sbjct: 82 SPSQIRRFNLHTGDSIQGEIRIPKDGERYFALVKVDVVNGEAPENTKHKIL 132
>gi|429462713|ref|YP_007184176.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811532|ref|YP_007447987.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338227|gb|AFZ82650.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776690|gb|AGF47689.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 418
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 271/349 (77%), Positives = 317/349 (90%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRR NLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRMNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GERYFAL+K++KVNG PE+ K+R +F+NLTPLHP + LER I S+EN+TGRI
Sbjct: 102 RTPKEGERYFALVKVEKVNGVLPEVVKHRIMFENLTPLHPCHNIKLEREIRSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ +PIGKGQRGL+VASPKSGK+I++QHIAHAI +N EA +IV+L+DERPEEVTEMQR
Sbjct: 162 LDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIASNMPEATLIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDVIILLDSITRLARAYNTVIP+S
Sbjct: 222 TVRGEVVASTFDEPANRHVQVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGG+D+NAL RPKRFFGAARNIEEGGSLTI+ TALI+TGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGIDANALHRPKRFFGAARNIEEGGSLTILGTALIDTGSRMDEVIYEEFKGTGNA 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERR+AEKRVYPAINLNKSGTRREELL++ D LQKIWVLRK ++ +
Sbjct: 342 EIHLERRMAEKRVYPAINLNKSGTRREELLVKQDILQKIWVLRKFIHDM 390
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/286 (49%), Positives = 170/286 (59%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+++ RLRKQELMFAI KK+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDI
Sbjct: 20 NLEIDNANRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL------Q 501
Y+SPSQIRR NLHTG +GE+R PK GERYFAL+K++KVN P+ K I+
Sbjct: 80 YISPSQIRRMNLHTGDSIEGEVRTPKEGERYFALVKVEKVNGVLPEVVKHRIMFENLTPL 139
Query: 502 HIAHAI--------------------------------------------------TTNH 511
H H I +N
Sbjct: 140 HPCHNIKLEREIRSEENLTGRILDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIASNM 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
EA +IV+L+DERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 200 PEATLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPANRHVQVAEMVIEKAKRLVEMKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGG+D+NAL RPKRFFGAAR
Sbjct: 260 VIILLDSITRLARAYNTVIPSSGKVLTGGIDANALHRPKRFFGAAR 305
>gi|56478117|ref|YP_159706.1| transcription termination factor Rho [Aromatoleum aromaticum EbN1]
gi|56314160|emb|CAI08805.1| Transcription termination factor rho [Aromatoleum aromaticum EbN1]
Length = 419
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/349 (76%), Positives = 317/349 (90%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG+LEVLPDGFGFLRS +Y+A +DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 RAKKGEPIYGDGALEVLPDGFGFLRSPDISYLAGTDDIYVSPSQIRRFNLHTGDTIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ K+N E PE K++ LF+NLTPLHP + L LER+I +ENIT R+
Sbjct: 102 RTPKDGERYFALVKLDKINSEPPEACKHKILFENLTPLHPNECLKLERDIRGEENITSRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGL+V+ PKSGK+++LQHIAH+I NH + ++IV+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRGLIVSPPKSGKTVMLQHIAHSIVANHPDVVVIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMV+EKAKRL E KKDV+ILLDS+TRLARAYNTV+PAS
Sbjct: 222 SVKGEVVASTFDEPASRHVQVAEMVIEKAKRLTEHKKDVVILLDSLTRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQ+PKRFFGAARNIEEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYPAIN+N+SGTRREELL++ D LQK+W+LRKLLY +
Sbjct: 342 ELHLDRRMAEKRVYPAINVNRSGTRREELLLKPDVLQKVWILRKLLYGM 390
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PKSGK+++LQHIAH+I NH + ++IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 177 VSPPKSGKTVMLQHIAHSIVANHPDVVVIVLLIDERPEEVTEMQRSVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQ+
Sbjct: 237 SRHVQVAEMVIEKAKRLTEHKKDVVILLDSLTRLARAYNTVVPASGKVLTGGVDANALQK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 113/181 (62%), Gaps = 16/181 (8%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E++ RLRKQEL+FA+ K + K GE I+GDG+LEVLPDGFGFLRS +Y+A +DDIY+
Sbjct: 22 EIDGANRLRKQELVFALLKNRAKKGEPIYGDGALEVLPDGFGFLRSPDISYLAGTDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAITT 509
SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ K+N P++ K IL +T
Sbjct: 82 SPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKLDKINSEPPEACKHKIL---FENLTP 138
Query: 510 NHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASGKV 569
H P E +++R +RGE ++ ++ + K R P SGK
Sbjct: 139 LH-------------PNECLKLERDIRGEENITSRVIDMIAPIGKGQRGLIVSPPKSGKT 185
Query: 570 L 570
+
Sbjct: 186 V 186
>gi|82703205|ref|YP_412771.1| transcription termination factor Rho [Nitrosospira multiformis ATCC
25196]
gi|82411270|gb|ABB75379.1| transcription termination factor Rho [Nitrosospira multiformis ATCC
25196]
Length = 419
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/349 (78%), Positives = 319/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ + GE IFG+G+LEVL DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 QARKGESIFGEGTLEVLQDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK++ LF+NLTPL P + L LER I+++EN+T RI
Sbjct: 102 RTPKDGERYFALVKVDKVNGEPPENSKHKILFENLTPLFPTERLQLEREIKAEENVTSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGLLVASPKSGK+++LQHIAHAI N+ + +++V+LIDERPEEVTEM R
Sbjct: 162 IDLIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIAANYPDVMLMVLLIDERPEEVTEMIR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVISSTFDEPAVRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR+YPAIN+N+SGTRREELLI+ D LQKIWVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRIYPAINVNRSGTRREELLIKPDVLQKIWVLRKLLYPM 390
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI N+ + +++V+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHAIAANYPDVMLMVLLIDERPEEVTEMIRSVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 VRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 87/111 (78%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E++ RLRKQ+L+FA+ K + + GE IFG+G+LEVL DGFGFLRS ++Y+A DDIY+
Sbjct: 22 EIDGANRLRKQDLIFALLKNQARKGESIFGEGTLEVLQDGFGFLRSPDTSYLAGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ KVN P++ K IL
Sbjct: 82 SPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVNGEPPENSKHKIL 132
>gi|302879646|ref|YP_003848210.1| transcription termination factor Rho [Gallionella capsiferriformans
ES-2]
gi|302582435|gb|ADL56446.1| transcription termination factor Rho [Gallionella capsiferriformans
ES-2]
Length = 418
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 269/347 (77%), Positives = 319/347 (91%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG+LE+LPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EGEIR
Sbjct: 44 KKGESIYGDGTLEILPDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRT 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERY AL+K+ KVN E PE +KN+ LF+NLTPL P + L+LER+I ++ENITGR+ID
Sbjct: 104 PKDGERYVALVKVDKVNDEPPENAKNKILFENLTPLFPTRPLILERDIRAEENITGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
++APIGKGQRGLLVASPKSGK+++LQHIAH+I+ N+ +A +IV+LIDERPEEVTEM R+V
Sbjct: 164 IVAPIGKGQRGLLVASPKSGKTVMLQHIAHSISANNPDATLIVLLIDERPEEVTEMTRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPASRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIEEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR+YPAIN+N+SGTR+EELL++ D LQ+IW+LRKLLY +
Sbjct: 344 HLDRRMAEKRIYPAININRSGTRKEELLLKPDVLQRIWLLRKLLYPM 390
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAH+I+ N+ +A +IV+LIDERPEEVTEM R+VRGEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMLQHIAHSISANNPDATLIVLLIDERPEEVTEMTRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 87/111 (78%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
++ + R+RKQ+LMFA+ K K GE I+GDG+LE+LPDGFGFLRS ++Y+A DDIY+
Sbjct: 22 QIENANRMRKQDLMFALLKSHAKKGESIYGDGTLEILPDGFGFLRSPDTSYLAGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG +GEIR PK+GERY AL+K+ KVN P++ K+ IL
Sbjct: 82 SPSQIRRFNLHTGDSIEGEIRTPKDGERYVALVKVDKVNDEPPENAKNKIL 132
>gi|451936496|ref|YP_007460350.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777419|gb|AGF48394.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 418
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/349 (76%), Positives = 322/349 (92%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRR NLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRINLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PEL K+R +F++LTPLHP + +LLER I+S+EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGVTPELLKHRIMFEDLTPLHPCQHMLLEREIKSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ +PIGKGQRGL+VASPKSGK+I++QHIAHAI +++ +A++I +L+DERPEEVTEM+R
Sbjct: 162 LDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIASSYPDAVLIALLVDERPEEVTEMRR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+I+LDSITRLARAYNTV+P+S
Sbjct: 222 TVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVIILDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERR+AEKRVYPAINLNKSGTRREELLI+ D LQK+WVLRK ++ +
Sbjct: 342 EIHLERRIAEKRVYPAINLNKSGTRREELLIKPDILQKVWVLRKFIHDM 390
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/287 (49%), Positives = 177/287 (61%), Gaps = 83/287 (28%)
Query: 387 IDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDD 446
+ LE+++ RLRKQELMFAI KK+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DD
Sbjct: 19 LSLEIDNANRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDD 78
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL------ 500
IY+SPSQIRR NLHTG +GE+R PK+GERYFAL+K+ KVN +P+ K I+
Sbjct: 79 IYISPSQIRRINLHTGDSIEGEVRTPKDGERYFALVKVDKVNGVTPELLKHRIMFEDLTP 138
Query: 501 ----QH----------------------------------------------IAHAITTN 510
QH IAHAI ++
Sbjct: 139 LHPCQHMLLEREIKSEENLTGRILDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIASS 198
Query: 511 HSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------- 548
+ +A++I +L+DERPEEVTEM+R+V+GEV+ASTFDEPA
Sbjct: 199 YPDAVLIALLVDERPEEVTEMRRTVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKK 258
Query: 549 -----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 259 DVVIILDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|451823114|ref|YP_007459388.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775914|gb|AGF46955.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 418
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/349 (76%), Positives = 317/349 (90%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRR NLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRMNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GERYFAL+K++KVNG PE+ K+R +F+NLTPLHP K + LER I+ +EN+TGRI
Sbjct: 102 RTPKEGERYFALVKVEKVNGVSPEVVKHRIMFENLTPLHPCKHITLEREIKGEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ +PIGKGQRGL+VASPKSGK++++QHIAHAI N +A +IV+L+DERPEEVTEMQR
Sbjct: 162 LDVFSPIGKGQRGLIVASPKSGKTVMMQHIAHAIAANMPDATLIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+ILLDSITRLARAYNTVIP+S
Sbjct: 222 TVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NAL RPKRFFGAARNIEEGGSLTI+ TALI+TGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALHRPKRFFGAARNIEEGGSLTILGTALIDTGSRMDEVIYEEFKGTGNA 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERR+AEKRVYPAINLNKSGTRREELLI+ + LQK+WVLRK ++ +
Sbjct: 342 EIHLERRMAEKRVYPAINLNKSGTRREELLIKQELLQKVWVLRKFIHDM 390
Score = 265 bits (676), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 174/286 (60%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+++ RLRKQELMFAI KK+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDI
Sbjct: 20 NLEIDNANRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL------- 500
Y+SPSQIRR NLHTG +GE+R PK GERYFAL+K++KVN SP+ K I+
Sbjct: 80 YISPSQIRRMNLHTGDSIEGEVRTPKEGERYFALVKVEKVNGVSPEVVKHRIMFENLTPL 139
Query: 501 ---QHI----------------------------------------------AHAITTNH 511
+HI AHAI N
Sbjct: 140 HPCKHITLEREIKGEENLTGRILDVFSPIGKGQRGLIVASPKSGKTVMMQHIAHAIAANM 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
+A +IV+L+DERPEEVTEMQR+V+GEV+ASTFDEPA
Sbjct: 200 PDATLIVLLVDERPEEVTEMQRTVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|451812256|ref|YP_007448710.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778158|gb|AGF49106.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 418
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/349 (76%), Positives = 321/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRR NLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYMSPSQIRRINLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PEL K+R +F++LTPLHP + + LER+I+S+EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGVAPELLKHRIMFEDLTPLHPCQHMRLERDIKSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ +PIGKGQRGL+VASPKSGK+I++QHIAHAI +N +A++I +L+DERPEEVTEM+R
Sbjct: 162 LDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIASNFPDAVLIALLVDERPEEVTEMRR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+I+LDSITRLARAYNTV+P+S
Sbjct: 222 TVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVIILDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERR+AEKRVYPAINLNKSGTRREELLI+ D LQK+WVLRK ++ +
Sbjct: 342 EIHLERRIAEKRVYPAINLNKSGTRREELLIKPDILQKVWVLRKFIHDM 390
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/288 (49%), Positives = 176/288 (61%), Gaps = 83/288 (28%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
+ LE+++ RLRKQELMFAI KK+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+D
Sbjct: 18 ALSLEIDNANRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL----- 500
DIY+SPSQIRR NLHTG +GE+R PK+GERYFAL+K+ KVN +P+ K I+
Sbjct: 78 DIYMSPSQIRRINLHTGDSIEGEVRTPKDGERYFALVKVDKVNGVAPELLKHRIMFEDLT 137
Query: 501 -----QH----------------------------------------------IAHAITT 509
QH IAHAI +
Sbjct: 138 PLHPCQHMRLERDIKSEENLTGRILDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIAS 197
Query: 510 NHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------- 548
N +A++I +L+DERPEEVTEM+R+V+GEV+ASTFDEPA
Sbjct: 198 NFPDAVLIALLVDERPEEVTEMRRTVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMK 257
Query: 549 ------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 258 KDVVIILDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|329911421|ref|ZP_08275521.1| Transcription termination factor Rho protein [Oxalobacteraceae
bacterium IMCC9480]
gi|327545898|gb|EGF31002.1| Transcription termination factor Rho protein [Oxalobacteraceae
bacterium IMCC9480]
Length = 364
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/321 (85%), Positives = 300/321 (93%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 44 RAKTGEQIFGDGALEVLPDGFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEV 103
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK+R LF+NLTPLHP + L LER + +ENITGRI
Sbjct: 104 RTPKDGERYFALVKVDKVNGESPEASKHRILFENLTPLHPNQPLRLEREMNGQENITGRI 163
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGLLVASPKSGKS+ILQH+AHAIT NH + +IV+LIDERPEEVTEMQR
Sbjct: 164 IDLIAPIGKGQRGLLVASPKSGKSVILQHMAHAITANHPDCTLIVLLIDERPEEVTEMQR 223
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV+ASTFDEPA RHVQVAEMVLEKAKRLVEMKKDV+ILLDSITRLARAYNTVIPAS
Sbjct: 224 SVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPAS 283
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVI+EEFKGTGNM
Sbjct: 284 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIFEEFKGTGNM 343
Query: 301 EVHLERRLAEKRVYPAINLNK 321
EVHLERRLAEKRVYPAINLNK
Sbjct: 344 EVHLERRLAEKRVYPAINLNK 364
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 96/115 (83%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I L++++ RLRKQELMFAI KK+ K GE+IFGDG+LEVLPDGFGFLRS ++YMAS+D
Sbjct: 20 AIGLDIDNAARLRKQELMFAILKKRAKTGEQIFGDGALEVLPDGFGFLRSPDASYMASTD 79
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ KVN SP++ K IL
Sbjct: 80 DIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGESPEASKHRIL 134
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/129 (66%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGKS+ILQH+AHAIT NH + +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 179 VASPKSGKSVILQHMAHAITANHPDCTLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPA 238
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 239 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 298
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 299 PKRFFGAAR 307
>gi|451812982|ref|YP_007449435.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|451778951|gb|AGF49831.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 418
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/349 (76%), Positives = 320/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRR NLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRINLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PEL K+R +F++LTPLHP + + LER I+S+EN+TGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGVTPELLKHRIMFEDLTPLHPCQHMRLEREIKSEENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ +PIGKGQRGL+VASPKSGK+I++QHIAHAI +N +AI+I +L+DERPEEVTEM+R
Sbjct: 162 LDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIASNFPDAILIALLVDERPEEVTEMRR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+I+LDSITRLARAYNTV+P+S
Sbjct: 222 TVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVIILDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERR+AEKRVYPAINLNKSGTRREELLI+ + LQK+WVLRK ++ +
Sbjct: 342 EIHLERRIAEKRVYPAINLNKSGTRREELLIKPEILQKVWVLRKFIHDM 390
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 143/287 (49%), Positives = 176/287 (61%), Gaps = 83/287 (28%)
Query: 387 IDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDD 446
+ LE+++ RLRKQELMFAI KK+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DD
Sbjct: 19 LSLEIDNANRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDD 78
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL------ 500
IY+SPSQIRR NLHTG +GE+R PK+GERYFAL+K+ KVN +P+ K I+
Sbjct: 79 IYISPSQIRRINLHTGDSIEGEVRTPKDGERYFALVKVDKVNGVTPELLKHRIMFEDLTP 138
Query: 501 ----QH----------------------------------------------IAHAITTN 510
QH IAHAI +N
Sbjct: 139 LHPCQHMRLEREIKSEENLTGRILDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIASN 198
Query: 511 HSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------- 548
+AI+I +L+DERPEEVTEM+R+V+GEV+ASTFDEPA
Sbjct: 199 FPDAILIALLVDERPEEVTEMRRTVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKK 258
Query: 549 -----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 259 DVVIILDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|438000053|ref|YP_007183786.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|429339287|gb|AFZ83709.1| transcription termination factor Rho [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
Length = 405
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/349 (76%), Positives = 320/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRR NLHTGD +EGE+
Sbjct: 29 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTDDIYISPSQIRRINLHTGDSIEGEV 88
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNG PEL K+R +F++LTPLHP + + LER I+S+EN+TGRI
Sbjct: 89 RTPKDGERYFALVKVDKVNGVTPELLKHRIMFEDLTPLHPCQHMRLEREIKSEENLTGRI 148
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+D+ +PIGKGQRGL+VASPKSGK+I++QHIAHAI +N +AI+I +L+DERPEEVTEM+R
Sbjct: 149 LDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIASNFPDAILIALLVDERPEEVTEMRR 208
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVEMKKDV+I+LDSITRLARAYNTV+P+S
Sbjct: 209 TVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVIILDSITRLARAYNTVVPSS 268
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTI+ TALIETGSRMD+VIYEEFKGTGN
Sbjct: 269 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNS 328
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERR+AEKRVYPAINLNKSGTRREELLI+ + LQK+WVLRK ++ +
Sbjct: 329 EIHLERRIAEKRVYPAINLNKSGTRREELLIKPEILQKVWVLRKFIHDM 377
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/288 (49%), Positives = 176/288 (61%), Gaps = 83/288 (28%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
+ LE+++ RLRKQELMFAI KK+ K GE+IFGDG LEVLPDGFGFLRS ++Y+AS+D
Sbjct: 5 ALSLEIDNANRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPDGFGFLRSPETSYLASTD 64
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL----- 500
DIY+SPSQIRR NLHTG +GE+R PK+GERYFAL+K+ KVN +P+ K I+
Sbjct: 65 DIYISPSQIRRINLHTGDSIEGEVRTPKDGERYFALVKVDKVNGVTPELLKHRIMFEDLT 124
Query: 501 -----QH----------------------------------------------IAHAITT 509
QH IAHAI +
Sbjct: 125 PLHPCQHMRLEREIKSEENLTGRILDVFSPIGKGQRGLIVASPKSGKTIMMQHIAHAIAS 184
Query: 510 NHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------- 548
N +AI+I +L+DERPEEVTEM+R+V+GEV+ASTFDEPA
Sbjct: 185 NFPDAILIALLVDERPEEVTEMRRTVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMK 244
Query: 549 ------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 245 KDVVIILDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 292
>gi|303256845|ref|ZP_07342859.1| transcription termination factor Rho [Burkholderiales bacterium
1_1_47]
gi|330998907|ref|ZP_08322634.1| transcription termination factor Rho [Parasutterella
excrementihominis YIT 11859]
gi|302860336|gb|EFL83413.1| transcription termination factor Rho [Burkholderiales bacterium
1_1_47]
gi|329576121|gb|EGG57640.1| transcription termination factor Rho [Parasutterella
excrementihominis YIT 11859]
Length = 418
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 272/370 (73%), Positives = 319/370 (86%), Gaps = 2/370 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG+LE+LPDGFGFLRS S+Y+AS++DIY+SPSQIRRFNLHTGD VEGE+
Sbjct: 42 RAKAGEQIFGDGTLEILPDGFGFLRSPVSSYLASTEDIYISPSQIRRFNLHTGDTVEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R+PK+GERYFAL+K+ KVNG PE K+R LF+NLTPL P + L LERNI EN+TGR+
Sbjct: 102 RIPKDGERYFALVKVDKVNGLPPEALKHRILFENLTPLFPNQPLKLERNISGDENLTGRL 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID++APIGKGQR LLVASPKSGK++++QHIAHAIT N+ + I++V+LIDERPEEVTEM+R
Sbjct: 162 IDILAPIGKGQRALLVASPKSGKTVLMQHIAHAITANYPDVILMVLLIDERPEEVTEMER 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEVIASTFDEPA RHVQVAEMV+EKAKRL E KKDV+ILLDSITRLARAYNTV+P S
Sbjct: 222 SVKGEVIASTFDEPATRHVQVAEMVIEKAKRLAESKKDVVILLDSITRLARAYNTVVPTS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVDSNALQRPKR GAARN+EEGGSLTII TAL+ETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDSNALQRPKRILGAARNLEEGGSLTIIGTALVETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFF 360
E+HL+RRLAEKRVYPAIN+ KSGTR+EELL+ +LQ IW+LRK LY M F
Sbjct: 342 EIHLDRRLAEKRVYPAINVAKSGTRKEELLLAPQELQNIWILRKFLYD--MDEIQAMEFL 399
Query: 361 IKRTIPVEKN 370
+ + P + N
Sbjct: 400 LDKMRPTKNN 409
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 97/115 (84%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
++L+V++ RLRKQELMFAI KK+ K GE+IFGDG+LE+LPDGFGFLRS S+Y+AS++
Sbjct: 18 ALELDVDNASRLRKQELMFAILKKRAKAGEQIFGDGTLEILPDGFGFLRSPVSSYLASTE 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GE+R+PK+GERYFAL+K+ KVN P++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDTVEGEVRIPKDGERYFALVKVDKVNGLPPEALKHRIL 132
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++QHIAHAIT N+ + I++V+LIDERPEEVTEM+RSV+GEVIASTFDEPA
Sbjct: 177 VASPKSGKTVLMQHIAHAITANYPDVILMVLLIDERPEEVTEMERSVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGKVLTGGVDSNALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLAESKKDVVILLDSITRLARAYNTVVPTSGKVLTGGVDSNALQR 296
Query: 582 PKRFFGAAR 590
PKR GAAR
Sbjct: 297 PKRILGAAR 305
>gi|74316055|ref|YP_313795.1| transcription termination factor Rho [Thiobacillus denitrificans
ATCC 25259]
gi|74055550|gb|AAZ95990.1| transcription termination factor Rho [Thiobacillus denitrificans
ATCC 25259]
Length = 419
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 269/347 (77%), Positives = 315/347 (90%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LEVLPDGFGFLRS ++Y+A++DDIY+SPSQIRRFNLHTGD +EGEIR
Sbjct: 44 KRGESIYGDGVLEVLPDGFGFLRSPETSYLANTDDIYVSPSQIRRFNLHTGDKIEGEIRT 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERY A+ K+ +NGE PE SKN+ LF+NLTPLHP K L LER I+++ENIT R+ID
Sbjct: 104 PKDGERYSAMTKLDLINGEPPEASKNKILFENLTPLHPDKPLKLEREIKAEENITSRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
++APIGKGQRGLLVA PKSGK+++LQHIAHAI++NH E ++ V+LIDERPEEVTEM R+V
Sbjct: 164 IVAPIGKGQRGLLVAPPKSGKTVMLQHIAHAISSNHPEVVLFVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYNTV PASGK
Sbjct: 224 RGEVVASTFDEPASRHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNTVQPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQ+PKRFFGAARNIEEGGSLTI+ATALIETGSRMDDVIYEEFKGTGN+E+
Sbjct: 284 VLTGGVDANALQKPKRFFGAARNIEEGGSLTILATALIETGSRMDDVIYEEFKGTGNLEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+R++AEKR YPAIN+N+SGTRREELL+ D LQK+WVLRKLLY +
Sbjct: 344 HLDRKMAEKRQYPAINVNRSGTRREELLMPHDILQKVWVLRKLLYPM 390
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAHAI++NH E ++ V+LIDERPEEVTEM R+VRGEV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVMLQHIAHAISSNHPEVVLFVLLIDERPEEVTEMSRTVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASGKVLTGGVD+NALQ+
Sbjct: 237 SRHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNTVQPASGKVLTGGVDANALQK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+++ R RKQEL+F I K K GE I+GDG LEVLPDGFGFLRS ++Y+A++DDIY+S
Sbjct: 23 IDNANRFRKQELIFTILKTLAKRGESIYGDGVLEVLPDGFGFLRSPETSYLANTDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNLHTG +GEIR PK+GERY A+ K+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLHTGDKIEGEIRTPKDGERYSAMTKLDLINGEPPEASKNKIL 132
>gi|254468423|ref|ZP_05081829.1| transcription termination factor Rho [beta proteobacterium KB13]
gi|207087233|gb|EDZ64516.1| transcription termination factor Rho [beta proteobacterium KB13]
Length = 419
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 271/349 (77%), Positives = 314/349 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE ++G G+LEVLPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD V GEI
Sbjct: 42 KAKNGETLYGQGTLEVLPDGFGFLRSADTSYLAGPDDIYVSPSQIRRFNLHTGDTVAGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+K++KVN E PE +KN+ LF+NLTPL P + L LER+I S+ENITGRI
Sbjct: 102 RTPKDSERYFALVKVEKVNEEPPENTKNKILFENLTPLFPTERLNLERDISSEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGL+VASPKSGK++++Q+IAHAIT NH E +IV+LIDERPEEVTEM R
Sbjct: 162 IDMIAPIGKGQRGLIVASPKSGKTVMMQNIAHAITANHPETELIVLLIDERPEEVTEMTR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTVIP+S
Sbjct: 222 SVKGEVVASTFDEPATRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NAL +PKRFFGAARN EE GSLTI+ATALI+TGS+MDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALHKPKRFFGAARNTEESGSLTILATALIDTGSKMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR+YPAIN+NKSGTRREELLI D LQKIWVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRLYPAINVNKSGTRREELLISQDVLQKIWVLRKLLYPM 390
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/297 (47%), Positives = 172/297 (57%), Gaps = 87/297 (29%)
Query: 381 LAETQTIDL----EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQ 436
L T IDL +V++ R+RKQ+L+FAI K K K GE ++G G+LEVLPDGFGFLRS
Sbjct: 9 LPVTNLIDLANESKVDNAGRMRKQDLIFAILKNKAKNGETLYGQGTLEVLPDGFGFLRSA 68
Query: 437 GSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRV--------------------PKNG- 475
++Y+A DDIY+SPSQIRRFNLHTG GEIR P+N
Sbjct: 69 DTSYLAGPDDIYVSPSQIRRFNLHTGDTVAGEIRTPKDSERYFALVKVEKVNEEPPENTK 128
Query: 476 -----ERYFALLKIKKVN------------------------------VASPKSGKSIIL 500
E L +++N VASPKSGK++++
Sbjct: 129 NKILFENLTPLFPTERLNLERDISSEENITGRIIDMIAPIGKGQRGLIVASPKSGKTVMM 188
Query: 501 QHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------ 548
Q+IAHAIT NH E +IV+LIDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 189 QNIAHAITANHPETELIVLLIDERPEEVTEMTRSVKGEVVASTFDEPATRHVQVAEMVIE 248
Query: 549 ---------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFFGAAR
Sbjct: 249 KAKRMVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAAR 305
>gi|296136200|ref|YP_003643442.1| transcription termination factor Rho [Thiomonas intermedia K12]
gi|410694010|ref|YP_003624632.1| Transcription termination factor rho (ATP-dependent helicase rho)
[Thiomonas sp. 3As]
gi|294340435|emb|CAZ88816.1| Transcription termination factor rho (ATP-dependent helicase rho)
[Thiomonas sp. 3As]
gi|295796322|gb|ADG31112.1| transcription termination factor Rho [Thiomonas intermedia K12]
Length = 420
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 265/348 (76%), Positives = 317/348 (91%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+ GE++FGDG LEVLPDGFGFLR+ S+YMAS DDIY+SPSQIRRFNLHTGD +EGE+R
Sbjct: 43 ARTGEQVFGDGCLEVLPDGFGFLRAPESSYMASPDDIYISPSQIRRFNLHTGDSIEGEVR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
VPK+GERYFAL+K+ +VNG PE +KN+ +F+NLTPL P + + LER+I+ +ENI GR+I
Sbjct: 103 VPKDGERYFALVKVDRVNGVTPEENKNKIMFENLTPLFPTEHMRLERDIKGEENIIGRVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++APIGKGQRGLLVA PKSGK+++LQ +AHAIT NH E ++IV+LIDERPEEVTEMQRS
Sbjct: 163 DIVAPIGKGQRGLLVAPPKSGKTVMLQALAHAITNNHPEVVLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV++STFDEPA RHVQVAEMV+EKAKRLVE+KKDV+ILLDSITRLARAYNTVIP SG
Sbjct: 223 VRGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVIPTSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+LTGGVD+NALQRPKRFFGAARNIEEGGSLTII TAL++TGSRMD+VIYEEFKGTGNME
Sbjct: 283 KILTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALVDTGSRMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL+RRL+EKRVYPA+ +N+SGTRREELL++ + LQK W+LRKLLY +
Sbjct: 343 IHLDRRLSEKRVYPAMLINRSGTRREELLLKPEILQKAWILRKLLYPM 390
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 134/285 (47%), Positives = 163/285 (57%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
E+ + RLRKQELMFAI KK + GE++FGDG LEVLPDGFGFLR+ S+YMAS DDIY
Sbjct: 21 FEIENASRLRKQELMFAILKKHARTGEQVFGDGCLEVLPDGFGFLRAPESSYMASPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKS-IILQHIAHAI 507
+SPSQIRRFNLHTG +GE+RVPK+GERYFAL+K+ +VN +P+ K+ I+ +++
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRVPKDGERYFALVKVDRVNGVTPEENKNKIMFENLTPLF 140
Query: 508 TTNH--------SEAIMIVMLID----------------------------------ERP 525
T H E +I +ID P
Sbjct: 141 PTEHMRLERDIKGEENIIGRVIDIVAPIGKGQRGLLVAPPKSGKTVMLQALAHAITNNHP 200
Query: 526 EEV-------------TEMQRSVRGEVIASTFDEPA------------------------ 548
E V TEMQRSVRGEV++STFDEPA
Sbjct: 201 EVVLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVELKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP SGK+LTGGVD+NALQRPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVIPTSGKILTGGVDANALQRPKRFFGAAR 305
>gi|319944211|ref|ZP_08018487.1| transcription termination factor rho [Lautropia mirabilis ATCC
51599]
gi|319742506|gb|EFV94917.1| transcription termination factor rho [Lautropia mirabilis ATCC
51599]
Length = 419
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/350 (75%), Positives = 323/350 (92%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K + G++IFGDG LEVLPDGFGFLR+ ++Y+AS DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 KARNGDQIFGDGVLEVLPDGFGFLRTPETSYLASPDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLER-NIESKENITGR 119
R PK+GERYFAL+K+ ++NG PE SK++ LF+NLTPLHP ++L LER ++ + EN+TGR
Sbjct: 102 RTPKDGERYFALVKVDRINGAPPEHSKHKILFENLTPLHPDEVLRLERPDLLTDENVTGR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
IID+IAPIGKGQRGL+VA PKSGK++++QHIAHAITTNH +A++IV+LIDERPEEVTEMQ
Sbjct: 162 IIDIIAPIGKGQRGLIVAPPKSGKTVMMQHIAHAITTNHPDAVVIVLLIDERPEEVTEMQ 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RS+RGEV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+
Sbjct: 222 RSIRGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPS 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTI+ATALI+TGSRMD+VIYEEFKGTGN
Sbjct: 282 SGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTILATALIDTGSRMDEVIYEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
ME+HL RR+ EKR++PA+++N+SGTRREELLI+ + LQK+W+LR+LL+ +
Sbjct: 342 MEIHLNRRMMEKRIFPAMDINRSGTRREELLIKPEILQKVWILRRLLHDM 391
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 97/129 (75%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAITTNH +A++IV+LIDERPEEVTEMQRS+RGEV++STFDEPA
Sbjct: 178 VAPPKSGKTVMMQHIAHAITTNHPDAVVIVLLIDERPEEVTEMQRSIRGEVVSSTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 238 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 120/182 (65%), Gaps = 15/182 (8%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI K+K + G++IFGDG LEVLPDGFGFLR+ ++Y+AS DDIY
Sbjct: 21 LEIEAANRLRKQELMFAILKRKARNGDQIFGDGVLEVLPDGFGFLRTPETSYLASPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+K+ ++N A P+ K IL +T
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDRINGAPPEHSKHKIL---FENLT 137
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASGK 568
H + ++ + ERP+ +T+ +V G +I ++ + K R P SGK
Sbjct: 138 PLHPDEVLRL----ERPDLLTD--ENVTGRIID------IIAPIGKGQRGLIVAPPKSGK 185
Query: 569 VL 570
+
Sbjct: 186 TV 187
>gi|389700744|ref|ZP_10185221.1| transcription termination factor Rho [Leptothrix ochracea L12]
gi|388591176|gb|EIM31438.1| transcription termination factor Rho [Leptothrix ochracea L12]
Length = 420
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 269/349 (77%), Positives = 315/349 (90%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IFGDG LEVLPDGFGFLRS ++++AS+DDIYLSPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKQGEQIFGDGVLEVLPDGFGFLRSPETSFLASTDDIYLSPSQIRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
RVPK+GERYFAL+K+ +VNG PE SKN+ +F+NLTPL PK+ LER I + ENIT RI
Sbjct: 102 RVPKDGERYFALVKVDRVNGLTPEESKNKIMFENLTPLFPKEQFRLEREIRNDENITSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQR LLVA PKSGK++++Q +AHAIT NH +A MIV+L+DERPEEVTEMQR
Sbjct: 162 IDLIAPIGKGQRALLVAPPKSGKTVMMQQLAHAITANHPDAHMIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE+KKDVIILLDSITRLARAYN V+P+S
Sbjct: 222 TVRGEVISSTFDEPAARHVQVAEMVIERAKRLVELKKDVIILLDSITRLARAYNNVLPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TAL++TGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALVDTGSRMDEVIYEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYP+I LNKSGTRREELL++ + LQK W+LRKLLY +
Sbjct: 342 EIHLDRRMAEKRVYPSILLNKSGTRREELLLKAEILQKTWILRKLLYPM 390
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + RLRKQELMFAI KK+ K GE+IFGDG LEVLPDGFGFLRS ++++AS+DDIY
Sbjct: 21 LEIENTSRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPDGFGFLRSPETSFLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
LSPSQIRRFNLHTG + +GE+RVPK+GERYFAL+K+ +VN +P+ K+ I+
Sbjct: 81 LSPSQIRRFNLHTGDMIEGEVRVPKDGERYFALVKVDRVNGLTPEESKNKIM 132
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++Q +AHAIT NH +A MIV+L+DERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 177 VAPPKSGKTVMMQQLAHAITANHPDAHMIVLLVDERPEEVTEMQRTVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 237 ARHVQVAEMVIERAKRLVELKKDVIILLDSITRLARAYNNVLPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|30249038|ref|NP_841108.1| transcription termination factor Rho [Nitrosomonas europaea ATCC
19718]
gi|30138655|emb|CAD84946.1| rho; Transcription termination factor [Nitrosomonas europaea ATCC
19718]
Length = 419
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/360 (76%), Positives = 320/360 (88%), Gaps = 1/360 (0%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
E IFG+G+LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD V+GEIR PK
Sbjct: 47 ESIFGEGTLEILQDGFGFLRSPDTSYLAGPDDIYISPSQIRRFNLHTGDSVDGEIRPPKE 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
GERYFAL+KI KVN E PE SK + LF+NLTPL P + L LER+I+S+ENITGRIIDLIA
Sbjct: 107 GERYFALVKIDKVNNEPPENSKRKILFENLTPLFPTERLTLERDIKSEENITGRIIDLIA 166
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
PIGKGQRGLLVASPKSGK+++LQHIAH+I NH + +++V+LIDERPEEVTEM RSV+GE
Sbjct: 167 PIGKGQRGLLVASPKSGKTVMLQHIAHSIAANHPDVVLMVLLIDERPEEVTEMVRSVKGE 226
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VI+STFDE A RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNT++PASGKVLT
Sbjct: 227 VISSTFDESAARHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTIVPASGKVLT 286
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNME+HL+
Sbjct: 287 GGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHLD 346
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT-MTSFTVSLFFIKRT 364
RR+AEKR+YPAIN+N+SGTRREELLI + LQKIW+LRKLLY + M + + L IK T
Sbjct: 347 RRMAEKRIYPAINVNRSGTRREELLIPSEILQKIWILRKLLYPMDEMDAMSFLLDKIKAT 406
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAH+I NH + +++V+LIDERPEEVTEM RSV+GEVI+STFDE A
Sbjct: 177 VASPKSGKTVMLQHIAHSIAANHPDVVLMVLLIDERPEEVTEMVRSVKGEVISSTFDESA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNT++PASGKVLTGGVD+NALQR
Sbjct: 237 ARHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTIVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 83/111 (74%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
++ R+RKQ+L+FA+ K + + E IFG+G+LE+L DGFGFLRS ++Y+A DDIY+
Sbjct: 22 DIEGANRMRKQDLVFALLKNQARKSESIFGEGTLEILQDGFGFLRSPDTSYLAGPDDIYI 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG GEIR PK GERYFAL+KI KVN P++ K IL
Sbjct: 82 SPSQIRRFNLHTGDSVDGEIRPPKEGERYFALVKIDKVNNEPPENSKRKIL 132
>gi|114332430|ref|YP_748652.1| transcription termination factor Rho [Nitrosomonas eutropha C91]
gi|114309444|gb|ABI60687.1| transcription termination factor Rho [Nitrosomonas eutropha C91]
Length = 419
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/361 (76%), Positives = 319/361 (88%), Gaps = 1/361 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFG+G+LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD V+GEIR PK
Sbjct: 46 GESIFGEGTLEILQDGFGFLRSPDTSYLAGPDDIYISPSQIRRFNLHTGDSVDGEIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFAL+KI KVN E PE SK + LF+NLTPL P + L LER+ +S+ENITGRIIDLI
Sbjct: 106 EGERYFALVKIDKVNNEPPENSKRKILFENLTPLFPTERLTLERDNKSEENITGRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQRGLLVASPKSGK+++LQHIAH+I NH + +++V+LIDERPEEVTEM RSVRG
Sbjct: 166 APIGKGQRGLLVASPKSGKTVMLQHIAHSIAANHPDVVLMVLLIDERPEEVTEMVRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDE A RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYN ++PASGKVL
Sbjct: 226 EVISSTFDESAARHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNMIVPASGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNME+HL
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT-MTSFTVSLFFIKR 363
+RR+AEKR+YPAIN+N+SGTRREELLI + LQKIW+LRKLLY + M + + L IK
Sbjct: 346 DRRMAEKRIYPAINVNRSGTRREELLISSEILQKIWILRKLLYPMDEMDAMSFLLDKIKA 405
Query: 364 T 364
T
Sbjct: 406 T 406
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/284 (45%), Positives = 165/284 (58%), Gaps = 83/284 (29%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
++ R+RKQ+L+FA+ K + + GE IFG+G+LE+L DGFGFLRS ++Y+A DDIY+
Sbjct: 22 DIEGANRMRKQDLVFALLKNQARKGESIFGEGTLEILQDGFGFLRSPDTSYLAGPDDIYI 81
Query: 450 SPSQIRRFNLHTGILWKGEIRV--------------------PKNGERYFAL-------- 481
SPSQIRRFNLHTG GEIR P+N +R
Sbjct: 82 SPSQIRRFNLHTGDSVDGEIRPPKEGERYFALVKIDKVNNEPPENSKRKILFENLTPLFP 141
Query: 482 ---LKIKKVN-------------------------VASPKSGKSIILQHIAHAITTNHSE 513
L +++ N VASPKSGK+++LQHIAH+I NH +
Sbjct: 142 TERLTLERDNKSEENITGRIIDLIAPIGKGQRGLLVASPKSGKTVMLQHIAHSIAANHPD 201
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+++V+LIDERPEEVTEM RSVRGEVI+STFDE A
Sbjct: 202 VVLMVLLIDERPEEVTEMVRSVRGEVISSTFDESAARHVQVADMVIEKAKRLVEHKKDVV 261
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN ++PASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 262 ILLDSITRLARAYNMIVPASGKVLTGGVDANALQRPKRFFGAAR 305
>gi|378823239|ref|ZP_09845910.1| transcription termination factor Rho [Sutterella parvirubra YIT
11816]
gi|378597941|gb|EHY31158.1| transcription termination factor Rho [Sutterella parvirubra YIT
11816]
Length = 418
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 262/349 (75%), Positives = 312/349 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE I+GDG+LE+LPDGFGFLRS S+Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 KAKSGETIYGDGTLEILPDGFGFLRSPDSSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+++ VNG PE K+R LF+NLTP+ P + L LERN+ EN+TGRI
Sbjct: 102 RTPKDGERYFALVRVDTVNGLPPEAVKHRILFENLTPIFPNQPLTLERNLRGDENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQR L+VA PKSGK+++LQHIAHAIT NH + +++V+L++ERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRALVVAPPKSGKTVLLQHIAHAITANHPDVVLMVLLVNERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+A+TFDEPA RHVQVAEMV+EKAKRL E KKDV++LLDSITRLARAYN VIP+S
Sbjct: 222 TVRGEVVAATFDEPALRHVQVAEMVIEKAKRLAESKKDVVVLLDSITRLARAYNQVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NAL+RPKR FGAARN+EEGGSLTI+ TAL++TGSRMDDVIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALERPKRIFGAARNLEEGGSLTIVGTALVDTGSRMDDVIYEEFKGTGNN 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERRLAEKRVYPAINLN+SGTRREELL++ D LQK+WVLRK LY +
Sbjct: 342 EIHLERRLAEKRVYPAINLNRSGTRREELLLKPDVLQKVWVLRKFLYDM 390
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 93/112 (83%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV++ +RLRKQELMFAI KKK K GE I+GDG+LE+LPDGFGFLRS S+Y+AS+DDIY
Sbjct: 21 LEVDNAQRLRKQELMFAILKKKAKSGETIYGDGTLEILPDGFGFLRSPDSSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+++ VN P++ K IL
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVRVDTVNGLPPEAVKHRIL 132
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAHAIT NH + +++V+L++ERPEEVTEMQR+VRGEV+A+TFDEPA
Sbjct: 177 VAPPKSGKTVLLQHIAHAITANHPDVVLMVLLVNERPEEVTEMQRTVRGEVVAATFDEPA 236
Query: 549 L---------------------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN VIP+SGKVLTGGVD+NAL+R
Sbjct: 237 LRHVQVAEMVIEKAKRLAESKKDVVVLLDSITRLARAYNQVIPSSGKVLTGGVDANALER 296
Query: 582 PKRFFGAAR 590
PKR FGAAR
Sbjct: 297 PKRIFGAAR 305
>gi|422350564|ref|ZP_16431448.1| transcription termination factor Rho [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657167|gb|EKB30070.1| transcription termination factor Rho [Sutterella wadsworthensis
2_1_59BFAA]
Length = 418
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 264/349 (75%), Positives = 311/349 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE+IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 KAKSGEQIFGDGTLEVLPDGFGFLRSPDTSYLASTDDIYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+++ VNG PE K+R LF+NLTPL P + L+LER++ EN+TGRI
Sbjct: 102 RTPKDGERYFALVRVDSVNGLPPESIKHRMLFENLTPLFPNEHLVLERDMRGDENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQR L+VA PKSGK++++QHIAHAI NH + + V+LIDERPEEVTEMQR
Sbjct: 162 IDMIAPIGKGQRALIVAPPKSGKTVLMQHIAHAIIANHPDVTLFVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+ EV+ASTFDEPA RHVQVAEMV+EKAKRL E K+DV+ILLDSITRLARAYNTVIP+S
Sbjct: 222 SVKAEVVASTFDEPAARHVQVAEMVIEKAKRLAESKRDVVILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKR FGAARN+EEGGSLTII TAL++TGSRMDDVIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRIFGAARNLEEGGSLTIIGTALVDTGSRMDDVIYEEFKGTGNN 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERR+AEKRVYPAINLN+SGTRREELL++ D LQK+W+LRK LY +
Sbjct: 342 EIHLERRMAEKRVYPAINLNRSGTRREELLLKPDVLQKVWILRKFLYDM 390
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 94/112 (83%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+++ +R+RKQELMFAI KKK K GE+IFGDG+LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 21 LEIDNAQRMRKQELMFAILKKKAKSGEQIFGDGTLEVLPDGFGFLRSPDTSYLASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R PK+GERYFAL+++ VN P+S K +L
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVRVDSVNGLPPESIKHRML 132
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAI NH + + V+LIDERPEEVTEMQRSV+ EV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVLMQHIAHAIIANHPDVTLFVLLIDERPEEVTEMQRSVKAEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 237 ARHVQVAEMVIEKAKRLAESKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKR FGAAR
Sbjct: 297 PKRIFGAAR 305
>gi|237653742|ref|YP_002890056.1| transcription termination factor Rho [Thauera sp. MZ1T]
gi|237624989|gb|ACR01679.1| transcription termination factor Rho [Thauera sp. MZ1T]
Length = 484
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/349 (75%), Positives = 311/349 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ + GE I GDG+LEVLPDGFGFLRS ++Y+A +DDIY+SPSQIRRFNL TGD +EGEI
Sbjct: 105 RARRGEPICGDGALEVLPDGFGFLRSPDTSYLAGTDDIYVSPSQIRRFNLRTGDTIEGEI 164
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ K+NG PE K + LF+NLTPLHP++ L LER + +EN+T RI
Sbjct: 165 RTPKDGERYFALTKLDKINGRPPEECKTKILFENLTPLHPQECLKLEREVRGEENVTSRI 224
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQRGLLVA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEM R
Sbjct: 225 IDMIAPIGKGQRGLLVAPPKSGKTVMLQHIAHAITANHPDVKLIVLLIDERPEEVTEMLR 284
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMV+EKAKRL E K DV+ILLDS+TRLARAYNTV+PAS
Sbjct: 285 SVKGEVVASTFDEPATRHVQVAEMVIEKAKRLTEHKYDVVILLDSLTRLARAYNTVVPAS 344
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQ+PKRFFGAARNIEEGGSLTIIAT L++TGSRMDDVIYEEFKGTGNM
Sbjct: 345 GKVLTGGVDANALQKPKRFFGAARNIEEGGSLTIIATTLVDTGSRMDDVIYEEFKGTGNM 404
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYPAIN+N+SGTRREELL++ D LQK+W+LRKLLY +
Sbjct: 405 ELHLDRRMAEKRVYPAINVNRSGTRREELLLKADVLQKVWILRKLLYGM 453
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAHAIT NH + +IV+LIDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 240 VAPPKSGKTVMLQHIAHAITANHPDVKLIVLLIDERPEEVTEMLRSVKGEVVASTFDEPA 299
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQ+
Sbjct: 300 TRHVQVAEMVIEKAKRLTEHKYDVVILLDSLTRLARAYNTVVPASGKVLTGGVDANALQK 359
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 360 PKRFFGAAR 368
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 112/184 (60%), Gaps = 16/184 (8%)
Query: 387 IDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDD 446
+D V RLRKQEL+FA+ + + + GE I GDG+LEVLPDGFGFLRS ++Y+A +DD
Sbjct: 82 MDAGVEGANRLRKQELVFALLRNRARRGEPICGDGALEVLPDGFGFLRSPDTSYLAGTDD 141
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHA 506
IY+SPSQIRRFNL TG +GEIR PK+GERYFAL K+ K+N P+ K+ IL
Sbjct: 142 IYVSPSQIRRFNLRTGDTIEGEIRTPKDGERYFALTKLDKINGRPPEECKTKIL---FEN 198
Query: 507 ITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPAS 566
+T H P+E +++R VRGE ++ ++ + K R P S
Sbjct: 199 LTPLH-------------PQECLKLEREVRGEENVTSRIIDMIAPIGKGQRGLLVAPPKS 245
Query: 567 GKVL 570
GK +
Sbjct: 246 GKTV 249
>gi|383759163|ref|YP_005438148.1| transcription termination factor Rho [Rubrivivax gelatinosus IL144]
gi|381379832|dbj|BAL96649.1| transcription termination factor Rho [Rubrivivax gelatinosus IL144]
Length = 421
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 266/350 (76%), Positives = 317/350 (90%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++FGDG LEVLPDGFGFLRS ++YMAS+DDIYLSPSQIRRFNLHTGD VEGE+
Sbjct: 42 RAKAGEQVFGDGVLEVLPDGFGFLRSIEASYMASTDDIYLSPSQIRRFNLHTGDMVEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLER-NIESKENITGR 119
RVPK+GERYFAL+K+ +VNG PE SK++ +F+NLTPL PK+ LER N++++ENITGR
Sbjct: 102 RVPKDGERYFALVKVDRVNGVTPEESKHKIMFENLTPLFPKEQFKLERDNLKAEENITGR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
IIDLIAPIGKGQR LLVA PK+GK++++QH+AHAI NH E +IV+L+DERPEEVTEM
Sbjct: 162 IIDLIAPIGKGQRALLVAQPKTGKTVMMQHLAHAIVANHPEVHLIVLLVDERPEEVTEML 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
R+VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+
Sbjct: 222 RTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPS 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALI+TGSRMD+VIYEEFKGTGN
Sbjct: 282 SGKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIGTALIDTGSRMDEVIYEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYP+I +NKSGTRREELL++ + LQK W+LRKLLY +
Sbjct: 342 CEIHLDRRMAEKRVYPSILINKSGTRREELLLKPEILQKTWILRKLLYPM 391
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ +V RLRKQELMFAI KK+ K GE++FGDG LEVLPDGFGFLRS ++YMAS+DDIY
Sbjct: 21 LEIENVARLRKQELMFAIMKKRAKAGEQVFGDGVLEVLPDGFGFLRSIEASYMASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
LSPSQIRRFNLHTG + +GE+RVPK+GERYFAL+K+ +VN +P+ K I+
Sbjct: 81 LSPSQIRRFNLHTGDMVEGEVRVPKDGERYFALVKVDRVNGVTPEESKHKIM 132
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK++++QH+AHAI NH E +IV+L+DERPEEVTEM R+VRGEVI+STFDEPA
Sbjct: 178 VAQPKTGKTVMMQHLAHAIVANHPEVHLIVLLVDERPEEVTEMLRTVRGEVISSTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 238 ARHVQVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
>gi|339482644|ref|YP_004694430.1| transcription termination factor Rho [Nitrosomonas sp. Is79A3]
gi|338804789|gb|AEJ01031.1| transcription termination factor Rho [Nitrosomonas sp. Is79A3]
Length = 419
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/361 (75%), Positives = 320/361 (88%), Gaps = 1/361 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+G G+LEVL DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD ++GEIR PK
Sbjct: 46 GENIYGHGTLEVLQDGFGFLRSPDTSYLAGPDDIYISPSQIRRFNLHTGDSIDGEIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL+K+ KVN E PE SK + LF+NLTPL P + L+LER+I+++ENIT RIIDLI
Sbjct: 106 DGERYFALVKVDKVNNEPPENSKQKILFENLTPLFPDERLILERDIKAEENITSRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQRGLLVASPKSGK+++LQHIAHAI N+ + I+IV+LIDERPEEVTEM RSVRG
Sbjct: 166 APIGKGQRGLLVASPKSGKTVMLQHIAHAIAANYPDVILIVLLIDERPEEVTEMIRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDE A RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASGKVL
Sbjct: 226 EVISSTFDESAMRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++ALQRPKRFFGAARN+EEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNME+HL
Sbjct: 286 TGGVDASALQRPKRFFGAARNVEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEIHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKR 363
+R++AEKR+YPAIN+N+SGTRREELLI + LQKIWVLRKLL+ + M + L IK
Sbjct: 346 DRKMAEKRIYPAINVNRSGTRREELLIPPEVLQKIWVLRKLLHPMDDMDAMAFLLDKIKA 405
Query: 364 T 364
T
Sbjct: 406 T 406
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI N+ + I+IV+LIDERPEEVTEM RSVRGEVI+STFDE A
Sbjct: 177 VASPKSGKTVMLQHIAHAIAANYPDVILIVLLIDERPEEVTEMIRSVRGEVISSTFDESA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD++ALQR
Sbjct: 237 MRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDASALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 87/115 (75%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I+ E++ R+RKQ+L+FA+ K + + GE I+G G+LEVL DGFGFLRS ++Y+A D
Sbjct: 18 AIENEIDGANRMRKQDLIFALLKNQARKGENIYGHGTLEVLQDGFGFLRSPDTSYLAGPD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG GEIR PK+GERYFAL+K+ KVN P++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIDGEIRPPKDGERYFALVKVDKVNNEPPENSKQKIL 132
>gi|332526132|ref|ZP_08402270.1| transcription termination factor Rho [Rubrivivax benzoatilyticus
JA2]
gi|332109975|gb|EGJ10603.1| transcription termination factor Rho [Rubrivivax benzoatilyticus
JA2]
Length = 421
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 266/350 (76%), Positives = 316/350 (90%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++FGDG LEVLPDGFGFLRS ++YMAS+DDIYLSPSQIRRFNLHTGD VEGE+
Sbjct: 42 RAKAGEQVFGDGVLEVLPDGFGFLRSIEASYMASTDDIYLSPSQIRRFNLHTGDMVEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLER-NIESKENITGR 119
RVPK+GERYFAL+K+ +VNG PE SK++ +F+NLTPL PK+ LER N++ +ENITGR
Sbjct: 102 RVPKDGERYFALVKVDRVNGVTPEESKHKIMFENLTPLFPKEQFKLERDNLKGEENITGR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
IIDLIAPIGKGQR LLVA PK+GK++++QH+AHAI NH E +IV+L+DERPEEVTEM
Sbjct: 162 IIDLIAPIGKGQRALLVAQPKTGKTVMMQHLAHAIVANHPEVHLIVLLVDERPEEVTEML 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
R+VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+
Sbjct: 222 RTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPS 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALI+TGSRMD+VIYEEFKGTGN
Sbjct: 282 SGKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIGTALIDTGSRMDEVIYEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYP+I +NKSGTRREELL++ + LQK W+LRKLLY +
Sbjct: 342 CEIHLDRRMAEKRVYPSILINKSGTRREELLLKPEILQKTWILRKLLYPM 391
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ +V RLRKQELMFAI KK+ K GE++FGDG LEVLPDGFGFLRS ++YMAS+DDIY
Sbjct: 21 LEIENVARLRKQELMFAIMKKRAKAGEQVFGDGVLEVLPDGFGFLRSIEASYMASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
LSPSQIRRFNLHTG + +GE+RVPK+GERYFAL+K+ +VN +P+ K I+
Sbjct: 81 LSPSQIRRFNLHTGDMVEGEVRVPKDGERYFALVKVDRVNGVTPEESKHKIM 132
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK++++QH+AHAI NH E +IV+L+DERPEEVTEM R+VRGEVI+STFDEPA
Sbjct: 178 VAQPKTGKTVMMQHLAHAIVANHPEVHLIVLLVDERPEEVTEMLRTVRGEVISSTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 238 ARHVQVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
>gi|118594397|ref|ZP_01551744.1| transcription termination factor Rho [Methylophilales bacterium
HTCC2181]
gi|118440175|gb|EAV46802.1| transcription termination factor Rho [Methylophilales bacterium
HTCC2181]
Length = 419
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/349 (76%), Positives = 311/349 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G+ +FG G+LEVL DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 QAKNGQVLFGSGTLEVLSDGFGFLRSAEASYLAGPDDIYVSPSQIRRFNLHTGDTIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+K+ KVN + PE +KN+ LF+NLTPL P + L LER+ E EN T R+
Sbjct: 102 RTPKDSERYFALVKVDKVNNDAPENTKNKILFENLTPLFPTEPLTLERDTEGVENYTSRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+I+P+GKGQRGLLVASPKSGK++++Q+IAHAIT NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDMISPVGKGQRGLLVASPKSGKTVMMQNIAHAITANHPDVSLIVLLIDERPEEVTEMTR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV+ASTFDEPA RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYNTVIP+S
Sbjct: 222 SVKGEVLASTFDEPATRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQ+PKRFFGAARNIEEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQKPKRFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYPAIN+NKS TRREELLI D LQKIWVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRVYPAINVNKSSTRREELLIPADVLQKIWVLRKLLYPM 390
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK++++Q+IAHAIT NH + +IV+LIDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 177 VASPKSGKTVMMQNIAHAITANHPDVSLIVLLIDERPEEVTEMTRSVKGEVLASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQ+
Sbjct: 237 TRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 87/111 (78%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
++ + R+RKQ+L+FA+ K + K G+ +FG G+LEVL DGFGFLRS ++Y+A DDIY+
Sbjct: 22 KIENTGRMRKQDLIFALLKNQAKNGQVLFGSGTLEVLSDGFGFLRSAEASYLAGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SPSQIRRFNLHTG +GEIR PK+ ERYFAL+K+ KVN +P++ K+ IL
Sbjct: 82 SPSQIRRFNLHTGDTIEGEIRTPKDSERYFALVKVDKVNNDAPENTKNKIL 132
>gi|124266475|ref|YP_001020479.1| transcription termination factor Rho [Methylibium petroleiphilum
PM1]
gi|124259250|gb|ABM94244.1| transcription termination factor Rho [Methylibium petroleiphilum
PM1]
Length = 430
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 261/349 (74%), Positives = 318/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++FGDG LEVLPDGFGFLRS ++Y+AS+DDIYLSPSQIRRFNLHTGD +EGE+
Sbjct: 52 RAKQGEQVFGDGVLEVLPDGFGFLRSPEASYLASTDDIYLSPSQIRRFNLHTGDMIEGEV 111
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
RVPK+GERYFAL+K+ VNG PE +K + +F+NLTPL PK+ LER+I+++ENIT RI
Sbjct: 112 RVPKDGERYFALVKVDIVNGITPEENKQKIMFENLTPLFPKEQFKLERDIKAEENITSRI 171
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DLIAP+GKGQR LLV++PKSGK++++Q++AHAIT N+ E +IV+L+DERPEEVTEMQR
Sbjct: 172 VDLIAPLGKGQRALLVSAPKSGKTVMMQNLAHAITANYPEVHLIVLLVDERPEEVTEMQR 231
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
++RGEVI+STFDEPA RHVQVAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 232 TIRGEVISSTFDEPAARHVQVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPSS 291
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TAL++TGSRMD+VIYEEFKGTGN
Sbjct: 292 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALVDTGSRMDEVIYEEFKGTGNC 351
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYP+I LNKSGTRREELL++ + LQK W+LRKLLYS+
Sbjct: 352 EIHLDRRMAEKRVYPSILLNKSGTRREELLLKPEILQKTWILRKLLYSM 400
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 16/182 (8%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + R+RKQELMFAI KK+ K GE++FGDG LEVLPDGFGFLRS ++Y+AS+DDIY
Sbjct: 31 LEIENSARMRKQELMFAIMKKRAKQGEQVFGDGVLEVLPDGFGFLRSPEASYLASTDDIY 90
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
LSPSQIRRFNLHTG + +GE+RVPK+GERYFAL+K+ VN +P+ K
Sbjct: 91 LSPSQIRRFNLHTGDMIEGEVRVPKDGERYFALVKVDIVNGITPEENK------------ 138
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVIPASGK 568
+ IM L P+E +++R ++ E ++ ++ + K RA P SGK
Sbjct: 139 ----QKIMFENLTPLFPKEQFKLERDIKAEENITSRIVDLIAPLGKGQRALLVSAPKSGK 194
Query: 569 VL 570
+
Sbjct: 195 TV 196
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V++PKSGK++++Q++AHAIT N+ E +IV+L+DERPEEVTEMQR++RGEVI+STFDEPA
Sbjct: 187 VSAPKSGKTVMMQNLAHAITANYPEVHLIVLLVDERPEEVTEMQRTIRGEVISSTFDEPA 246
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 247 ARHVQVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQR 306
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 307 PKRFFGAAR 315
>gi|325982322|ref|YP_004294724.1| transcription termination factor Rho [Nitrosomonas sp. AL212]
gi|325531841|gb|ADZ26562.1| transcription termination factor Rho [Nitrosomonas sp. AL212]
Length = 419
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 269/345 (77%), Positives = 312/345 (90%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+G G+LEVL DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD ++GEIR PK
Sbjct: 46 GENIYGHGTLEVLQDGFGFLRSPDTSYLAGPDDIYISPSQIRRFNLHTGDSIDGEIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL+K+ KVN E PE SK + LF+NLTPL P + L+LER+I+++ENIT RIIDLI
Sbjct: 106 DGERYFALVKVDKVNNEPPENSKQKILFENLTPLFPDERLILERDIKAEENITSRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQRGLLVASPKSGK+++LQHIAHAI NH + I++V+LIDERPEEVTEM RSV+G
Sbjct: 166 APIGKGQRGLLVASPKSGKTVMLQHIAHAIAANHPDVILMVLLIDERPEEVTEMIRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDE A RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYN V+PASGKVL
Sbjct: 226 EVISSTFDESAARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNAVVPASGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++ALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNME+HL
Sbjct: 286 TGGVDASALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEIHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKR+YPAIN+N+S TRREELLI + LQKIWVLRKLL+ +
Sbjct: 346 DRRMAEKRIYPAINVNRSSTRREELLIAAEVLQKIWVLRKLLHPM 390
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VASPKSGK+++LQHIAHAI NH + I++V+LIDERPEEVTEM RSV+GEVI+STFDE A
Sbjct: 177 VASPKSGKTVMLQHIAHAIAANHPDVILMVLLIDERPEEVTEMIRSVKGEVISSTFDESA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+PASGKVLTGGVD++ALQR
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNAVVPASGKVLTGGVDASALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 87/115 (75%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I+ E++ R+RKQ+L+FA+ K + + GE I+G G+LEVL DGFGFLRS ++Y+A D
Sbjct: 18 AIENEIDGANRMRKQDLIFALLKNQARKGENIYGHGTLEVLQDGFGFLRSPDTSYLAGPD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG GEIR PK+GERYFAL+K+ KVN P++ K IL
Sbjct: 78 DIYISPSQIRRFNLHTGDSIDGEIRPPKDGERYFALVKVDKVNNEPPENSKQKIL 132
>gi|71908611|ref|YP_286198.1| transcription termination factor Rho [Dechloromonas aromatica RCB]
gi|71848232|gb|AAZ47728.1| transcription termination factor Rho [Dechloromonas aromatica RCB]
Length = 419
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/349 (75%), Positives = 313/349 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K G+ I+GDG+LEVLPDGFGFLRS ++Y+A+ DDIY+SPSQIRRFNL TGD VEGEI
Sbjct: 42 KAKNGDTIYGDGTLEVLPDGFGFLRSSDTSYLANPDDIYVSPSQIRRFNLRTGDTVEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERY AL K+ ++NG PE +KN+ +F+NLTPLHP + L LER I+S+ENIT R+
Sbjct: 102 RTPKDGERYVALTKLDRINGFSPEANKNKIMFENLTPLHPTRHLKLEREIKSEENITSRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG GQRGLLVA PK+GK+++LQ+IAHAIT NH E ++IV+LIDERPEEVTEM R
Sbjct: 162 IDMIAPIGCGQRGLLVAPPKTGKTVMLQNIAHAITANHPEVVLIVLLIDERPEEVTEMTR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEPA RHV VAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV PAS
Sbjct: 222 TVKGEVVASTFDEPASRHVAVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQ+PKRFFGAARNIEEGGSLTI+ATALI+TGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQKPKRFFGAARNIEEGGSLTILATALIDTGSRMDEVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR+YPA+N+N+SGTRREELL++ D LQK+WVLRKL Y +
Sbjct: 342 EIHLDRRMAEKRMYPAVNVNRSGTRREELLLKPDVLQKMWVLRKLCYPM 390
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 153/286 (53%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF------GFLRSQGSN 439
+L + + R+RK EL++AI K K K G+ I+GDG+LEVLPD GF +L +
Sbjct: 20 ELVIENANRMRKMELIYAILKAKAKNGDTIYGDGTLEVLPDGFGFLRSSDTSYLANPDDI 79
Query: 440 YMASSD----------------------DIYLSPSQIRRFNLHTGILWKGEIR----VPK 473
Y++ S + Y++ +++ R N + K +I P
Sbjct: 80 YVSPSQIRRFNLRTGDTVEGEIRTPKDGERYVALTKLDRINGFSPEANKNKIMFENLTPL 139
Query: 474 NGERYFALLKIKKVN----------------------VASPKSGKSIILQHIAHAITTNH 511
+ R+ L + K VA PK+GK+++LQ+IAHAIT NH
Sbjct: 140 HPTRHLKLEREIKSEENITSRVIDMIAPIGCGQRGLLVAPPKTGKTVMLQNIAHAITANH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E ++IV+LIDERPEEVTEM R+V+GEV+ASTFDEPA
Sbjct: 200 PEVVLIVLLIDERPEEVTEMTRTVKGEVVASTFDEPASRHVAVAEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGKVLTGGVD+NALQ+PKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVQPASGKVLTGGVDANALQKPKRFFGAAR 305
>gi|171059487|ref|YP_001791836.1| transcription termination factor Rho [Leptothrix cholodnii SP-6]
gi|170776932|gb|ACB35071.1| transcription termination factor Rho [Leptothrix cholodnii SP-6]
Length = 420
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 260/349 (74%), Positives = 314/349 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ + GE+IFGDG LEVLPDGFGFLRS ++++AS+DDIYLSPSQIRRFNLHTGD +EGE+
Sbjct: 42 RARQGEQIFGDGVLEVLPDGFGFLRSLDASFLASTDDIYLSPSQIRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
RVPK+GERYFAL+K+ +VN PE SKN+ +F+NLTPL PK+ LER+++++ENIT RI
Sbjct: 102 RVPKDGERYFALVKVDRVNELTPEESKNKIMFENLTPLFPKEQFRLERDVKNEENITSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQR LLVA PKSGK++++QH AHA+ NH + +IV+L+DERPEEVTEMQR
Sbjct: 162 IDLIAPIGKGQRALLVAPPKSGKTVMMQHFAHALIANHPDVHLIVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE++KDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVRGEVISSTFDEPAARHVQVAEMVIERAKRLVELRKDVVILLDSITRLARAYNNVLPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+ ALQRPKRFFGAARN+EEGGSLTII TALI+TGSRMD+VIYEEFKGTGN
Sbjct: 282 GKVLTGGVDAGALQRPKRFFGAARNVEEGGSLTIIGTALIDTGSRMDEVIYEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYP+I LNKSGTRREELL++ + LQK W+LRKLLY +
Sbjct: 342 EIHLDRRMAEKRVYPSILLNKSGTRREELLLKPEILQKTWILRKLLYPM 390
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 157/293 (53%), Gaps = 87/293 (29%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG--------F 432
+AET LE+ + RLRKQELMFAI KK+ + GE+IFGDG LEVLPDGFG F
Sbjct: 17 MAET----LEIENASRLRKQELMFAIMKKRARQGEQIFGDGVLEVLPDGFGFLRSLDASF 72
Query: 433 LRSQGSNYMASSD----------------------DIYLSPSQIRRFNLHTGILWKGEI- 469
L S Y++ S + Y + ++ R N T K +I
Sbjct: 73 LASTDDIYLSPSQIRRFNLHTGDMIEGEVRVPKDGERYFALVKVDRVNELTPEESKNKIM 132
Query: 470 ----------------RVPKNGE----RYFALLKI-----KKVNVASPKSGKSIILQHIA 504
R KN E R L+ + + VA PKSGK++++QH A
Sbjct: 133 FENLTPLFPKEQFRLERDVKNEENITSRIIDLIAPIGKGQRALLVAPPKSGKTVMMQHFA 192
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------- 548
HA+ NH + +IV+L+DERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 193 HALIANHPDVHLIVLLVDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKR 252
Query: 549 -----------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN V+P+SGKVLTGGVD+ ALQRPKRFFGAAR
Sbjct: 253 LVELRKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDAGALQRPKRFFGAAR 305
>gi|319942679|ref|ZP_08016986.1| transcription termination factor Rho [Sutterella wadsworthensis
3_1_45B]
gi|319803762|gb|EFW00697.1| transcription termination factor Rho [Sutterella wadsworthensis
3_1_45B]
Length = 418
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 254/349 (72%), Positives = 311/349 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K+GE I+GDG+LE+LPDGFGFLRS ++YMAS+DD+Y+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 KAKLGETIYGDGTLEILPDGFGFLRSPETSYMASTDDVYISPSQIRRFNLHTGDSIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R+PK+GERYFAL+++ VN PE K+R LF+NLTP+ P K L+LER++ EN+TGRI
Sbjct: 102 RIPKDGERYFALVRVDTVNDLPPEALKHRMLFENLTPIFPNKQLVLERDMRGDENLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+ APIGKGQR L+VA PKSGK+++LQHIAH+I+ N+ +A+++V+L++ERPEEVTEMQR
Sbjct: 162 IDMFAPIGKGQRSLIVAPPKSGKTVLLQHIAHSISANYPDAVLMVLLVNERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
++RGEV+A+TFDEPA RHVQVAEMV+EKAKRL E K+DV+ILLDSITRLARAYN VIP+S
Sbjct: 222 TIRGEVVAATFDEPAVRHVQVAEMVIEKAKRLAESKRDVVILLDSITRLARAYNQVIPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NAL+RPKR FGAARNIEEGGSLTII TALI+TGSRMDDVIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALERPKRIFGAARNIEEGGSLTIIGTALIDTGSRMDDVIYEEFKGTGNN 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HLERR+AEKRV+PAINL +SGTRREELL+ + LQK WVLRK +Y +
Sbjct: 342 EIHLERRMAEKRVFPAINLTRSGTRREELLLAPEVLQKTWVLRKFIYDM 390
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV++ +R+RKQELM+AI KKK K+GE I+GDG+LE+LPDGFGFLRS ++YMAS+DD+Y
Sbjct: 21 LEVDNAQRMRKQELMYAILKKKAKLGETIYGDGTLEILPDGFGFLRSPETSYMASTDDVY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG +GE+R+PK+GERYFAL+++ VN P++ K +L
Sbjct: 81 ISPSQIRRFNLHTGDSIEGEVRIPKDGERYFALVRVDTVNDLPPEALKHRML 132
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAH+I+ N+ +A+++V+L++ERPEEVTEMQR++RGEV+A+TFDEPA
Sbjct: 177 VAPPKSGKTVLLQHIAHSISANYPDAVLMVLLVNERPEEVTEMQRTIRGEVVAATFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN VIP+SGKVLTGGVD+NAL+R
Sbjct: 237 VRHVQVAEMVIEKAKRLAESKRDVVILLDSITRLARAYNQVIPSSGKVLTGGVDANALER 296
Query: 582 PKRFFGAAR 590
PKR FGAAR
Sbjct: 297 PKRIFGAAR 305
>gi|212213529|ref|YP_002304465.1| transcription termination factor Rho [Coxiella burnetii CbuG_Q212]
gi|212011939|gb|ACJ19320.1| transcription termination factor rho [Coxiella burnetii CbuG_Q212]
Length = 418
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/361 (73%), Positives = 311/361 (86%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 44 KKGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK ERYFALL++ ++N EKPE SK + LF+NLTPL P + + +E S E+IT RIID
Sbjct: 104 PKESERYFALLQVNEINLEKPEASKGKILFENLTPLFPNEQISMETGNGSTEDITARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQRGL+V+ PK+GK+++LQ+IAH+ITTNH E ++IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRGLIVSPPKAGKTMMLQNIAHSITTNHPECVLIVLLIDERPEEVTEMDRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIPASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL+ETGS+MDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+RR+AEKR +PAIN+N+SGTRREEL++ D LQK+W+LRK+L+ M S F I
Sbjct: 344 HLDRRIAEKRTFPAININRSGTRREELMMPQDVLQKVWILRKILHP--MDELAASEFLID 401
Query: 363 R 363
R
Sbjct: 402 R 402
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 162/302 (53%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++ Q ++LE V R RKQ+++FA+ K K GE IFGDG LE+L DGFG
Sbjct: 6 LKQKSVPELMQIAQEMNLEY--VSRTRKQDIIFAVLKAHAKKGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDI------------------------------YLSPSQIRRFNLHT 461
FLRS S+Y+A DDI Y + Q+ NL
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRPPKESERYFALLQVNEINLEK 123
Query: 462 GILWKGEIRVPK---------------NGERYFALLKI-----------KKVNVASPKSG 495
KG+I NG +I + + V+ PK+G
Sbjct: 124 PEASKGKILFENLTPLFPNEQISMETGNGSTEDITARIIDLISPIGKGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IAH+ITTNH E ++IV+LIDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 184 KTMMLQNIAHSITTNHPECVLIVLLIDERPEEVTEMDRSVKGEVVASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIPASGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|29655364|ref|NP_821056.1| transcription termination factor Rho [Coxiella burnetii RSA 493]
gi|153206897|ref|ZP_01945715.1| transcription termination factor Rho [Coxiella burnetii 'MSU Goat
Q177']
gi|154707044|ref|YP_001425486.1| transcription termination factor Rho [Coxiella burnetii Dugway
5J108-111]
gi|161830205|ref|YP_001597820.1| transcription termination factor Rho [Coxiella burnetii RSA 331]
gi|212219583|ref|YP_002306370.1| transcription termination factor Rho [Coxiella burnetii CbuK_Q154]
gi|29542636|gb|AAO91570.1| transcription termination factor rho [Coxiella burnetii RSA 493]
gi|120576970|gb|EAX33594.1| transcription termination factor Rho [Coxiella burnetii 'MSU Goat
Q177']
gi|154356330|gb|ABS77792.1| transcription termination factor rho [Coxiella burnetii Dugway
5J108-111]
gi|161762072|gb|ABX77714.1| transcription termination factor Rho [Coxiella burnetii RSA 331]
gi|212013845|gb|ACJ21225.1| transcription termination factor rho [Coxiella burnetii CbuK_Q154]
Length = 418
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/361 (73%), Positives = 311/361 (86%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 44 KKGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK ERYFALL++ ++N EKPE SK + LF+NLTPL P + + +E S E+IT RIID
Sbjct: 104 PKESERYFALLQVNEINLEKPEASKGKILFENLTPLFPNEQIRMETGNGSTEDITARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQRGL+V+ PK+GK+++LQ+IAH+ITTNH E ++IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRGLIVSPPKAGKTMMLQNIAHSITTNHPECVLIVLLIDERPEEVTEMDRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIPASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL+ETGS+MDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+RR+AEKR +PAIN+N+SGTRREEL++ D LQK+W+LRK+L+ M S F I
Sbjct: 344 HLDRRIAEKRTFPAININRSGTRREELMMPQDVLQKVWILRKILHP--MDELAASEFLID 401
Query: 363 R 363
R
Sbjct: 402 R 402
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 162/302 (53%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++ Q ++LE V R RKQ+++FA+ K K GE IFGDG LE+L DGFG
Sbjct: 6 LKQKSVPELMQIAQEMNLEY--VSRTRKQDIIFAVLKAHAKKGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDI------------------------------YLSPSQIRRFNLHT 461
FLRS S+Y+A DDI Y + Q+ NL
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRPPKESERYFALLQVNEINLEK 123
Query: 462 GILWKGEIRVPK---------------NGERYFALLKI-----------KKVNVASPKSG 495
KG+I NG +I + + V+ PK+G
Sbjct: 124 PEASKGKILFENLTPLFPNEQIRMETGNGSTEDITARIIDLISPIGKGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IAH+ITTNH E ++IV+LIDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 184 KTMMLQNIAHSITTNHPECVLIVLLIDERPEEVTEMDRSVKGEVVASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIPASGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|349573697|ref|ZP_08885671.1| transcription termination factor Rho [Neisseria shayeganii 871]
gi|348014751|gb|EGY53621.1| transcription termination factor Rho [Neisseria shayeganii 871]
Length = 419
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 255/347 (73%), Positives = 311/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K G+ G+LE+LPDGFGFLRS ++Y+AS DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KQGQSFNCSGTLEILPDGFGFLRSTDTSYLASPDDIYVSPNQIRRFNLHTGDTIEGTVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PKN ERYFAL+++ +NG+ PE+ K++ LF+NLTPL P + LER+I+++EN+T R ID
Sbjct: 104 PKNDERYFALVRLDSINGDPPEVCKHKILFENLTPLFPTQQFKLERDIKAEENLTSRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ EA +IV+LIDERPEEVTEM RSV
Sbjct: 164 LVSPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEAELIVLLIDERPEEVTEMTRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVASTFDEPAARHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGSRMDDVI+EEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HLERRLAEKRV+PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLERRLAEKRVFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQ+IAHAIT N+ EA +IV+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 177 VAPPKSGKTVMLQNIAHAITANYPEAELIVLLIDERPEEVTEMTRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGK+LTGGVD+NAL R
Sbjct: 237 ARHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + RLRKQ+L+FAI + K G+ G+LE+LPDGFGFLRS ++Y+AS DDIY+S
Sbjct: 23 IENANRLRKQDLVFAIVRHLMKQGQSFNCSGTLEILPDGFGFLRSTDTSYLASPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
P+QIRRFNLHTG +G +RVPKN ERYFAL+++ +N P+ K IL
Sbjct: 83 PNQIRRFNLHTGDTIEGTVRVPKNDERYFALVRLDSINGDPPEVCKHKIL 132
>gi|345875969|ref|ZP_08827751.1| transcription termination factor Rho [Neisseria weaveri LMG 5135]
gi|417957017|ref|ZP_12599947.1| transcription termination factor Rho [Neisseria weaveri ATCC 51223]
gi|343967902|gb|EGV36141.1| transcription termination factor Rho [Neisseria weaveri LMG 5135]
gi|343969342|gb|EGV37558.1| transcription termination factor Rho [Neisseria weaveri ATCC 51223]
Length = 422
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 255/347 (73%), Positives = 309/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EG +RV
Sbjct: 44 KQGEAFNCSGTLEILPDGFGFLRSSDTSYLAGPDDIYVSPSQIRRFNLHTGDTIEGTVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+KPE+ K++ LF+NLTPL P K LER+I ++ENIT R ID
Sbjct: 104 PKDNERYFALVRLDSINGDKPEVCKHKILFENLTPLFPTKQFKLERDIRAEENITSRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIG+GQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LVSPIGRGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVSSTFDEPATRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGK+LTGGVD+NAL R
Sbjct: 237 TRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 86/122 (70%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE Q I+ + RLRKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEQGIE----NANRLRKQDLVFAIVRQLMKQGEAFNCSGTLEILPDGFGFLRSSDT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y+A DDIY+SPSQIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+ K
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLHTGDTIEGTVRVPKDNERYFALVRLDSINGDKPEVCKHK 130
Query: 499 IL 500
IL
Sbjct: 131 IL 132
>gi|261401404|ref|ZP_05987529.1| transcription termination factor Rho [Neisseria lactamica ATCC
23970]
gi|313668898|ref|YP_004049182.1| transcription termination factor [Neisseria lactamica 020-06]
gi|421863542|ref|ZP_16295238.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|269208529|gb|EEZ74984.1| transcription termination factor Rho [Neisseria lactamica ATCC
23970]
gi|309378980|emb|CBX22433.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006360|emb|CBN87823.1| transcription termination factor [Neisseria lactamica 020-06]
Length = 419
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 254/347 (73%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P K L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHAIE----NANRFRKQDLVFAIVRQMMKKGESFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTKQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHAIT N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAITANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|261377966|ref|ZP_05982539.1| transcription termination factor Rho [Neisseria cinerea ATCC 14685]
gi|269145829|gb|EEZ72247.1| transcription termination factor Rho [Neisseria cinerea ATCC 14685]
Length = 419
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 254/347 (73%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P K L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHAIE----NANRFRKQDLVFAIVRQMMKKGESFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTKQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHAIT N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAITANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|375105785|ref|ZP_09752046.1| transcription termination factor Rho [Burkholderiales bacterium
JOSHI_001]
gi|374666516|gb|EHR71301.1| transcription termination factor Rho [Burkholderiales bacterium
JOSHI_001]
Length = 421
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 257/350 (73%), Positives = 312/350 (89%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++FGDG LEVLPDGFGFLRS ++YMAS+DDIYLSPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFGDGVLEVLPDGFGFLRSIEASYMASTDDIYLSPSQIRRFNLHTGDLIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLER-NIESKENITGR 119
RVPK+GERYFAL+K+ +VNG PE +K++ +F+NLTPL PK LER ++ +E++TGR
Sbjct: 102 RVPKDGERYFALVKVDRVNGLTPEENKHKIMFENLTPLFPKSAFKLEREGLKGEESVTGR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
IDLIAPIGKGQR LLVA PK+GK++++QHIAH++ NH E +IV+L+DERPEEVTEM
Sbjct: 162 TIDLIAPIGKGQRALLVAQPKTGKTMMMQHIAHSLVANHPEIHLIVLLVDERPEEVTEMV 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
R VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE+ KDV+ILLDSITRLARAYN V+P+
Sbjct: 222 RGVRGEVISSTFDEPAARHVQVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPS 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTII TALI+TGSRMD+VIYEEFKGTGN
Sbjct: 282 SGKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIGTALIDTGSRMDEVIYEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKRVYP+I +NK+GTRREELL++ + LQK W+LRKLLY++
Sbjct: 342 CEIHLDRRMAEKRVYPSILINKTGTRREELLLKPEILQKTWILRKLLYNM 391
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 95/112 (84%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ +V RLRKQELMFAI KK+ K GE++FGDG LEVLPDGFGFLRS ++YMAS+DDIY
Sbjct: 21 LEIENVSRLRKQELMFAIMKKRAKAGEQVFGDGVLEVLPDGFGFLRSIEASYMASTDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
LSPSQIRRFNLHTG L +GE+RVPK+GERYFAL+K+ +VN +P+ K I+
Sbjct: 81 LSPSQIRRFNLHTGDLIEGEVRVPKDGERYFALVKVDRVNGLTPEENKHKIM 132
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK++++QHIAH++ NH E +IV+L+DERPEEVTEM R VRGEVI+STFDEPA
Sbjct: 178 VAQPKTGKTMMMQHIAHSLVANHPEIHLIVLLVDERPEEVTEMVRGVRGEVISSTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 238 ARHVQVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
>gi|421556722|ref|ZP_16002632.1| transcription termination factor Rho [Neisseria meningitidis 80179]
gi|402335976|gb|EJU71238.1| transcription termination factor Rho [Neisseria meningitidis 80179]
Length = 419
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 311/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T+N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 169/295 (57%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHAIE----NANRFRKQDLVFAIVRQMMKKGESFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T+N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTSNYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|319763164|ref|YP_004127101.1| transcription termination factor rho [Alicycliphilus denitrificans
BC]
gi|330825227|ref|YP_004388530.1| transcription termination factor Rho [Alicycliphilus denitrificans
K601]
gi|317117725|gb|ADV00214.1| transcription termination factor Rho [Alicycliphilus denitrificans
BC]
gi|329310599|gb|AEB85014.1| transcription termination factor Rho [Alicycliphilus denitrificans
K601]
Length = 420
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/349 (72%), Positives = 309/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS S+Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDSSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ VNG PE +K++ +F+NLTPL PK+ + LER+I+S ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDSVNGGPPEQNKHKVMFENLTPLFPKEQMRLERDIKSDENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT NH + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTMMMQHIAHAITANHPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 SVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVDSNALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDSNALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLSRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYNM 390
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 94/130 (72%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT NH + ++V+L+DERPEEVTEMQRSV+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTMMMQHIAHAITANHPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVDSNALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 96/131 (73%), Gaps = 2/131 (1%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ + R+RKQELMFAI KK+ K GE++F DG LE+LPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENGGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y AS+DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN
Sbjct: 62 FGFLRSPDSSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVNG 121
Query: 490 ASPKSGKSIIL 500
P+ K ++
Sbjct: 122 GPPEQNKHKVM 132
>gi|433481545|ref|ZP_20438811.1| transcription termination factor Rho [Neisseria meningitidis
2006087]
gi|432217760|gb|ELK73626.1| transcription termination factor Rho [Neisseria meningitidis
2006087]
Length = 419
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTQQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHAIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTQQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|388566948|ref|ZP_10153388.1| transcription termination factor Rho [Hydrogenophaga sp. PBC]
gi|388265780|gb|EIK91330.1| transcription termination factor Rho [Hydrogenophaga sp. PBC]
Length = 420
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 250/349 (71%), Positives = 313/349 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+I+ DG LEVLPDGFGFLR+ ++Y AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGEQIYADGVLEVLPDGFGFLRAPDTSYTASTDDIYISPSQIRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R+PK+GERYFAL K+ K+NG PE +K++ +F+NLTPL PK+ + LER+I+S+ENITGR+
Sbjct: 102 RIPKDGERYFALNKLDKINGLAPEENKHKIMFENLTPLFPKEQMRLERDIKSEENITGRV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHI HAIT NH + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTVMMQHICHAITANHPDVELMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEVIASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+I+LDSITRLARAYN V+P+S
Sbjct: 222 TVRGEVIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVIMLDSITRLARAYNNVLPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+P+I LN+SGTRREELL+Q + LQK +LR+ +Y++
Sbjct: 342 EIHLDRRLYEKRVFPSIQLNRSGTRREELLLQPEILQKTRILRQFMYNM 390
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHI HAIT NH + ++V+L+DERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHICHAITANHPDVELMVLLVDERPEEVTEMQRTVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVIMLDSITRLARAYNNVLPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/116 (61%), Positives = 92/116 (79%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q LE+ + R+RKQELMFAI KK+ K GE+I+ DG LEVLPDGFGFLR+ ++Y AS+
Sbjct: 17 QAEALEIENTGRMRKQELMFAIIKKRAKTGEQIYADGVLEVLPDGFGFLRAPDTSYTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQIRRFNLHTG + +GE+R+PK+GERYFAL K+ K+N +P+ K I+
Sbjct: 77 DDIYISPSQIRRFNLHTGDMIEGEVRIPKDGERYFALNKLDKINGLAPEENKHKIM 132
>gi|294669318|ref|ZP_06734397.1| transcription termination factor Rho [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308728|gb|EFE49971.1| transcription termination factor Rho [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 419
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/356 (71%), Positives = 312/356 (87%), Gaps = 3/356 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RVPK
Sbjct: 46 GEDFNCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPNQIRRFNLHTGDTIEGTVRVPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
N ERYFAL+++ +NG+ PE+ K++ LF+NLTPL P K LER+I+++EN+T R IDL+
Sbjct: 106 NDERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTSRAIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIG+GQR LLVA PKSGK+++LQ+IAHAIT N+ +A +IV+LIDERPEEVTEM RSVRG
Sbjct: 166 SPIGRGQRALLVAPPKSGKTVMLQNIAHAITANYPDAELIVLLIDERPEEVTEMSRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK+L
Sbjct: 226 EVVSSTFDEPATRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGKIL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL
Sbjct: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY---SLTMTSFTVS 357
+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ L T F V
Sbjct: 346 DRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPMDDLEATEFLVD 401
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQ+IAHAIT N+ +A +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTVMLQNIAHAITANYPDAELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGK+LTGGVD+NAL R
Sbjct: 237 TRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 82/116 (70%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q L + + RLRKQ+L+FAI ++ + GE G+LE+LPDGFGFLRS ++Y+A
Sbjct: 17 QAEQLGIENANRLRKQDLVFAIVRQLMRQGEDFNCSGTLEILPDGFGFLRSADTSYLAGP 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SP+QIRRFNLHTG +G +RVPKN ERYFAL+++ +N P+ K IL
Sbjct: 77 DDIYVSPNQIRRFNLHTGDTIEGTVRVPKNDERYFALVRLDSINGDHPEVCKHKIL 132
>gi|225024211|ref|ZP_03713403.1| hypothetical protein EIKCOROL_01083 [Eikenella corrodens ATCC
23834]
gi|224943236|gb|EEG24445.1| hypothetical protein EIKCOROL_01083 [Eikenella corrodens ATCC
23834]
Length = 419
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/357 (71%), Positives = 313/357 (87%), Gaps = 3/357 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+AS DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KQGESFSCSGTLEILPDGFGFLRSTDTSYLASPDDIYVSPNQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ K+NG+ PE+ K++ LF+NLTPL P + + LER+I+++ENIT R ID
Sbjct: 104 PKDNERYFALVRLDKINGDDPEVCKHKILFENLTPLFPTRPIKLERDIKAEENITARAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIG GQR LLVA PK+GK+++LQ+IAHAIT N+ E ++IV+LIDERPEEVTEM RSV
Sbjct: 164 LVSPIGMGQRALLVAPPKTGKTVMLQNIAHAITANYPEVVLIVLLIDERPEEVTEMTRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV P SGK
Sbjct: 224 RGEVVASTFDEPAARHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVAPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGG+D+NAL RPKRFFGAARNIEEGGSLTIIATAL+ETGSRMDDVI+EEFKGTGNME+
Sbjct: 284 ILTGGMDANALHRPKRFFGAARNIEEGGSLTIIATALVETGSRMDDVIFEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY---SLTMTSFTV 356
HL+RR+AEKRV+PAIN+NKSGTRREE+L+ +D+LQ++W+LRK L+ L T F V
Sbjct: 344 HLDRRMAEKRVFPAININKSGTRREEMLVSNDRLQRMWLLRKFLHPMDDLEATEFLV 400
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IAHAIT N+ E ++IV+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 177 VAPPKTGKTVMLQNIAHAITANYPEVVLIVLLIDERPEEVTEMTRSVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P SGK+LTGG+D+NAL R
Sbjct: 237 ARHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVAPTSGKILTGGMDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + RLRKQ+L+F+I + K GE G+LE+LPDGFGFLRS ++Y+AS DDIY+S
Sbjct: 23 IENANRLRKQDLVFSIVRHMMKQGESFSCSGTLEILPDGFGFLRSTDTSYLASPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
P+QIRRFNLHTG +G +RVPK+ ERYFAL+++ K+N P+ K IL
Sbjct: 83 PNQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDKINGDDPEVCKHKIL 132
>gi|308743488|gb|ADO40163.1| transcription termination factor Rho [Neisseriaceae bacterium
NB-13]
Length = 380
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/347 (73%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 26 KQGEAFTCSGTLEILPDGFGFLRSSDTSYLAGPDDIYVSPNQIRRFNLHTGDTIEGSVRV 85
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ K+N + PE+ K++ LF+NLTPL P + L LER+I+++ENIT R ID
Sbjct: 86 PKDNERYFALVRLDKINDDPPEVCKHKILFENLTPLFPTRQLKLERDIKAEENITSRAID 145
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIG GQRGLLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 146 LVSPIGMGQRGLLVAPPKSGKTVMLQNIAHAITANNPEVELIVLLIDERPEEVTEMTRSV 205
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 206 RGEVVSSTFDEPATRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 265
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARNIEEGGSLTIIATAL+ETGSRMDDVI+EEFKGTGNME+
Sbjct: 266 ILTGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVETGSRMDDVIFEEFKGTGNMEL 325
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RRLAEKRV+PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 326 HLDRRLAEKRVFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 372
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 159 VAPPKSGKTVMLQNIAHAITANNPEVELIVLLIDERPEEVTEMTRSVRGEVVSSTFDEPA 218
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGK+LTGGVD+NAL R
Sbjct: 219 TRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHR 278
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 279 PKRFFGAAR 287
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + RLRKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+S
Sbjct: 5 IENANRLRKQDLVFAIVRQMMKQGEAFTCSGTLEILPDGFGFLRSSDTSYLAGPDDIYVS 64
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
P+QIRRFNLHTG +G +RVPK+ ERYFAL+++ K+N P+ K IL
Sbjct: 65 PNQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDKINDDPPEVCKHKIL 114
>gi|161869550|ref|YP_001598717.1| transcription termination factor Rho [Neisseria meningitidis
053442]
gi|161595103|gb|ABX72763.1| transcription termination factor [Neisseria meningitidis 053442]
Length = 419
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 311/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T+N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 169/295 (57%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T+N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTSNYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|218767751|ref|YP_002342263.1| transcription termination factor Rho [Neisseria meningitidis Z2491]
gi|385337590|ref|YP_005891463.1| transcription termination factor Rho [Neisseria meningitidis WUE
2594]
gi|385339586|ref|YP_005893458.1| transcription termination factor Rho [Neisseria meningitidis G2136]
gi|385854769|ref|YP_005901282.1| transcription termination factor Rho [Neisseria meningitidis
M01-240355]
gi|416214194|ref|ZP_11622789.1| transcription termination factor Rho [Neisseria meningitidis
M01-240013]
gi|433475235|ref|ZP_20432576.1| transcription termination factor Rho [Neisseria meningitidis 88050]
gi|433479295|ref|ZP_20436590.1| transcription termination factor Rho [Neisseria meningitidis 63041]
gi|433496372|ref|ZP_20453414.1| transcription termination factor Rho [Neisseria meningitidis M7089]
gi|433498434|ref|ZP_20455443.1| transcription termination factor Rho [Neisseria meningitidis M7124]
gi|433500404|ref|ZP_20457390.1| transcription termination factor Rho [Neisseria meningitidis NM174]
gi|433512983|ref|ZP_20469777.1| transcription termination factor Rho [Neisseria meningitidis 63049]
gi|433515396|ref|ZP_20472168.1| transcription termination factor Rho [Neisseria meningitidis
2004090]
gi|433517130|ref|ZP_20473879.1| transcription termination factor Rho [Neisseria meningitidis 96023]
gi|433519352|ref|ZP_20476073.1| transcription termination factor Rho [Neisseria meningitidis 65014]
gi|433523636|ref|ZP_20480301.1| transcription termination factor Rho [Neisseria meningitidis 97020]
gi|433527739|ref|ZP_20484350.1| transcription termination factor Rho [Neisseria meningitidis
NM3652]
gi|433529914|ref|ZP_20486507.1| transcription termination factor Rho [Neisseria meningitidis
NM3642]
gi|433532172|ref|ZP_20488738.1| transcription termination factor Rho [Neisseria meningitidis
2007056]
gi|433533987|ref|ZP_20490533.1| transcription termination factor Rho [Neisseria meningitidis
2001212]
gi|433540483|ref|ZP_20496938.1| transcription termination factor Rho [Neisseria meningitidis 63006]
gi|121051759|emb|CAM08065.1| transcription termination factor [Neisseria meningitidis Z2491]
gi|319410004|emb|CBY90335.1| transcription termination factor Rho [Neisseria meningitidis WUE
2594]
gi|325143997|gb|EGC66307.1| transcription termination factor Rho [Neisseria meningitidis
M01-240013]
gi|325197830|gb|ADY93286.1| transcription termination factor Rho [Neisseria meningitidis G2136]
gi|325203710|gb|ADY99163.1| transcription termination factor Rho [Neisseria meningitidis
M01-240355]
gi|432211053|gb|ELK67008.1| transcription termination factor Rho [Neisseria meningitidis 88050]
gi|432217695|gb|ELK73562.1| transcription termination factor Rho [Neisseria meningitidis 63041]
gi|432234268|gb|ELK89888.1| transcription termination factor Rho [Neisseria meningitidis M7124]
gi|432235456|gb|ELK91069.1| transcription termination factor Rho [Neisseria meningitidis M7089]
gi|432235695|gb|ELK91304.1| transcription termination factor Rho [Neisseria meningitidis NM174]
gi|432248660|gb|ELL04084.1| transcription termination factor Rho [Neisseria meningitidis 63049]
gi|432253984|gb|ELL09320.1| transcription termination factor Rho [Neisseria meningitidis
2004090]
gi|432254139|gb|ELL09474.1| transcription termination factor Rho [Neisseria meningitidis 96023]
gi|432255343|gb|ELL10672.1| transcription termination factor Rho [Neisseria meningitidis 65014]
gi|432260535|gb|ELL15793.1| transcription termination factor Rho [Neisseria meningitidis 97020]
gi|432266046|gb|ELL21234.1| transcription termination factor Rho [Neisseria meningitidis
NM3652]
gi|432267842|gb|ELL23014.1| transcription termination factor Rho [Neisseria meningitidis
NM3642]
gi|432268117|gb|ELL23288.1| transcription termination factor Rho [Neisseria meningitidis
2007056]
gi|432272907|gb|ELL28010.1| transcription termination factor Rho [Neisseria meningitidis
2001212]
gi|432277498|gb|ELL32544.1| transcription termination factor Rho [Neisseria meningitidis 63006]
Length = 419
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 311/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T+N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 169/295 (57%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T+N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTSNYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|254804499|ref|YP_003082720.1| transcription termination factor Rho [Neisseria meningitidis
alpha14]
gi|296314988|ref|ZP_06864929.1| transcription termination factor Rho [Neisseria polysaccharea ATCC
43768]
gi|254668041|emb|CBA04461.1| transcription termination factor Rho [Neisseria meningitidis
alpha14]
gi|296838189|gb|EFH22127.1| transcription termination factor Rho [Neisseria polysaccharea ATCC
43768]
Length = 419
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHAIT N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAITANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|421554421|ref|ZP_16000363.1| transcription termination factor Rho [Neisseria meningitidis 98008]
gi|402332720|gb|EJU68042.1| transcription termination factor Rho [Neisseria meningitidis 98008]
Length = 419
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHAIT N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAITANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|304388141|ref|ZP_07370266.1| transcription termination factor Rho [Neisseria meningitidis ATCC
13091]
gi|421542015|ref|ZP_15988126.1| transcription termination factor Rho [Neisseria meningitidis NM255]
gi|254673995|emb|CBA09779.1| transcription termination factor Rho [Neisseria meningitidis
alpha275]
gi|304337868|gb|EFM04012.1| transcription termination factor Rho [Neisseria meningitidis ATCC
13091]
gi|389606320|emb|CCA45233.1| transcription termination factor rho ATP-dependent helicase rho
[Neisseria meningitidis alpha522]
gi|402318500|gb|EJU54022.1| transcription termination factor Rho [Neisseria meningitidis NM255]
Length = 419
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 311/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T+N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 169/295 (57%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T+N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTSNYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|418290098|ref|ZP_12902283.1| transcription termination factor Rho [Neisseria meningitidis NM220]
gi|421539776|ref|ZP_15985931.1| transcription termination factor Rho [Neisseria meningitidis 93004]
gi|372202186|gb|EHP16035.1| transcription termination factor Rho [Neisseria meningitidis NM220]
gi|402320568|gb|EJU56055.1| transcription termination factor Rho [Neisseria meningitidis 93004]
Length = 419
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHAIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|385324627|ref|YP_005879066.1| transcription termination factor Rho [Neisseria meningitidis 8013]
gi|421560785|ref|ZP_16006639.1| transcription termination factor Rho [Neisseria meningitidis
NM2657]
gi|254670797|emb|CBA07141.1| transcription termination factor Rho [Neisseria meningitidis
alpha153]
gi|261393014|emb|CAX50603.1| transcription termination factor Rho [Neisseria meningitidis 8013]
gi|402339639|gb|EJU74852.1| transcription termination factor Rho [Neisseria meningitidis
NM2657]
Length = 419
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTQQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTQQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|433468375|ref|ZP_20425812.1| transcription termination factor Rho [Neisseria meningitidis 98080]
gi|432206461|gb|ELK62468.1| transcription termination factor Rho [Neisseria meningitidis 98080]
Length = 419
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|15676520|ref|NP_273661.1| transcription termination factor Rho [Neisseria meningitidis MC58]
gi|385327951|ref|YP_005882254.1| transcription termination factor [Neisseria meningitidis alpha710]
gi|385342383|ref|YP_005896254.1| transcription termination factor Rho [Neisseria meningitidis
M01-240149]
gi|385851712|ref|YP_005898227.1| transcription termination factor Rho [Neisseria meningitidis
M04-240196]
gi|385853692|ref|YP_005900206.1| transcription termination factor Rho [Neisseria meningitidis
H44/76]
gi|385856772|ref|YP_005903284.1| transcription termination factor Rho [Neisseria meningitidis
NZ-05/33]
gi|416173281|ref|ZP_11608939.1| transcription termination factor Rho [Neisseria meningitidis
OX99.30304]
gi|416183985|ref|ZP_11612891.1| transcription termination factor Rho [Neisseria meningitidis
M13399]
gi|416188530|ref|ZP_11614844.1| transcription termination factor Rho [Neisseria meningitidis M0579]
gi|416197866|ref|ZP_11618765.1| transcription termination factor Rho [Neisseria meningitidis CU385]
gi|421537834|ref|ZP_15984016.1| transcription termination factor Rho [Neisseria meningitidis 93003]
gi|421562844|ref|ZP_16008667.1| transcription termination factor Rho [Neisseria meningitidis
NM2795]
gi|421564941|ref|ZP_16010728.1| transcription termination factor Rho [Neisseria meningitidis
NM3081]
gi|421567792|ref|ZP_16013526.1| transcription termination factor Rho [Neisseria meningitidis
NM3001]
gi|421906427|ref|ZP_16336321.1| Transcription termination factor rho [Neisseria meningitidis
alpha704]
gi|427826888|ref|ZP_18993934.1| transcription termination factor Rho [Neisseria meningitidis
H44/76]
gi|433464596|ref|ZP_20422082.1| transcription termination factor Rho [Neisseria meningitidis NM422]
gi|433487795|ref|ZP_20444964.1| transcription termination factor Rho [Neisseria meningitidis
M13255]
gi|433489964|ref|ZP_20447096.1| transcription termination factor Rho [Neisseria meningitidis NM418]
gi|433504564|ref|ZP_20461504.1| transcription termination factor Rho [Neisseria meningitidis 9506]
gi|433506374|ref|ZP_20463292.1| transcription termination factor Rho [Neisseria meningitidis 9757]
gi|433508793|ref|ZP_20465668.1| transcription termination factor Rho [Neisseria meningitidis 12888]
gi|433510878|ref|ZP_20467713.1| transcription termination factor Rho [Neisseria meningitidis 4119]
gi|433521433|ref|ZP_20478129.1| transcription termination factor Rho [Neisseria meningitidis 61103]
gi|433536292|ref|ZP_20492803.1| transcription termination factor Rho [Neisseria meningitidis 77221]
gi|7225847|gb|AAF41043.1| transcription termination factor Rho [Neisseria meningitidis MC58]
gi|308388803|gb|ADO31123.1| transcription termination factor [Neisseria meningitidis alpha710]
gi|316985273|gb|EFV64224.1| transcription termination factor Rho [Neisseria meningitidis
H44/76]
gi|325129747|gb|EGC52556.1| transcription termination factor Rho [Neisseria meningitidis
OX99.30304]
gi|325133867|gb|EGC56523.1| transcription termination factor Rho [Neisseria meningitidis
M13399]
gi|325135788|gb|EGC58400.1| transcription termination factor Rho [Neisseria meningitidis M0579]
gi|325139831|gb|EGC62363.1| transcription termination factor Rho [Neisseria meningitidis CU385]
gi|325200696|gb|ADY96151.1| transcription termination factor Rho [Neisseria meningitidis
H44/76]
gi|325202589|gb|ADY98043.1| transcription termination factor Rho [Neisseria meningitidis
M01-240149]
gi|325206535|gb|ADZ01988.1| transcription termination factor Rho [Neisseria meningitidis
M04-240196]
gi|325207661|gb|ADZ03113.1| transcription termination factor Rho [Neisseria meningitidis
NZ-05/33]
gi|393292399|emb|CCI72253.1| Transcription termination factor rho [Neisseria meningitidis
alpha704]
gi|402317871|gb|EJU53398.1| transcription termination factor Rho [Neisseria meningitidis 93003]
gi|402342228|gb|EJU77397.1| transcription termination factor Rho [Neisseria meningitidis
NM2795]
gi|402343825|gb|EJU78971.1| transcription termination factor Rho [Neisseria meningitidis
NM3001]
gi|402345546|gb|EJU80662.1| transcription termination factor Rho [Neisseria meningitidis
NM3081]
gi|432204467|gb|ELK60508.1| transcription termination factor Rho [Neisseria meningitidis NM422]
gi|432224826|gb|ELK80588.1| transcription termination factor Rho [Neisseria meningitidis
M13255]
gi|432228806|gb|ELK84501.1| transcription termination factor Rho [Neisseria meningitidis NM418]
gi|432242079|gb|ELK97603.1| transcription termination factor Rho [Neisseria meningitidis 9506]
gi|432244007|gb|ELK99508.1| transcription termination factor Rho [Neisseria meningitidis 9757]
gi|432248368|gb|ELL03795.1| transcription termination factor Rho [Neisseria meningitidis 12888]
gi|432249231|gb|ELL04646.1| transcription termination factor Rho [Neisseria meningitidis 4119]
gi|432261212|gb|ELL16467.1| transcription termination factor Rho [Neisseria meningitidis 61103]
gi|432274889|gb|ELL29969.1| transcription termination factor Rho [Neisseria meningitidis 77221]
Length = 419
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|418287838|ref|ZP_12900377.1| transcription termination factor Rho [Neisseria meningitidis NM233]
gi|372203013|gb|EHP16753.1| transcription termination factor Rho [Neisseria meningitidis NM233]
Length = 419
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|121634410|ref|YP_974655.1| transcription termination factor Rho [Neisseria meningitidis FAM18]
gi|416178878|ref|ZP_11610835.1| transcription termination factor Rho [Neisseria meningitidis M6190]
gi|416192903|ref|ZP_11616924.1| transcription termination factor Rho [Neisseria meningitidis
ES14902]
gi|416206370|ref|ZP_11620772.1| transcription termination factor Rho [Neisseria meningitidis
961-5945]
gi|421550165|ref|ZP_15996170.1| transcription termination factor Rho [Neisseria meningitidis 69166]
gi|421558823|ref|ZP_16004701.1| transcription termination factor Rho [Neisseria meningitidis 92045]
gi|433466756|ref|ZP_20424214.1| transcription termination factor Rho [Neisseria meningitidis 87255]
gi|433470952|ref|ZP_20428345.1| transcription termination factor Rho [Neisseria meningitidis 68094]
gi|433477100|ref|ZP_20434423.1| transcription termination factor Rho [Neisseria meningitidis 70012]
gi|433492114|ref|ZP_20449208.1| transcription termination factor Rho [Neisseria meningitidis NM586]
gi|433494194|ref|ZP_20451264.1| transcription termination factor Rho [Neisseria meningitidis NM762]
gi|433502606|ref|ZP_20459572.1| transcription termination factor Rho [Neisseria meningitidis NM126]
gi|433525608|ref|ZP_20482242.1| transcription termination factor Rho [Neisseria meningitidis 69096]
gi|433538491|ref|ZP_20494971.1| transcription termination factor Rho [Neisseria meningitidis 70030]
gi|120866116|emb|CAM09855.1| transcription termination factor [Neisseria meningitidis FAM18]
gi|325131931|gb|EGC54631.1| transcription termination factor Rho [Neisseria meningitidis M6190]
gi|325137602|gb|EGC60179.1| transcription termination factor Rho [Neisseria meningitidis
ES14902]
gi|325141875|gb|EGC64319.1| transcription termination factor Rho [Neisseria meningitidis
961-5945]
gi|402330380|gb|EJU65727.1| transcription termination factor Rho [Neisseria meningitidis 69166]
gi|402337566|gb|EJU72814.1| transcription termination factor Rho [Neisseria meningitidis 92045]
gi|432203883|gb|ELK59931.1| transcription termination factor Rho [Neisseria meningitidis 87255]
gi|432210237|gb|ELK66199.1| transcription termination factor Rho [Neisseria meningitidis 68094]
gi|432216322|gb|ELK72203.1| transcription termination factor Rho [Neisseria meningitidis 70012]
gi|432228903|gb|ELK84596.1| transcription termination factor Rho [Neisseria meningitidis NM586]
gi|432230868|gb|ELK86538.1| transcription termination factor Rho [Neisseria meningitidis NM762]
gi|432241829|gb|ELK97357.1| transcription termination factor Rho [Neisseria meningitidis NM126]
gi|432261799|gb|ELL17044.1| transcription termination factor Rho [Neisseria meningitidis 69096]
gi|432274499|gb|ELL29586.1| transcription termination factor Rho [Neisseria meningitidis 70030]
Length = 419
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|340364000|ref|ZP_08686302.1| transcription termination factor Rho [Neisseria macacae ATCC 33926]
gi|339884330|gb|EGQ74128.1| transcription termination factor Rho [Neisseria macacae ATCC 33926]
Length = 498
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 309/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 123 KQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 182
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ K++ LF+NLTPL P K LER+I+++EN+TGR ID
Sbjct: 183 PKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTGRAID 242
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIG+GQR LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSV
Sbjct: 243 LVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSV 302
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 303 RGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 362
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 363 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 422
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 423 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 469
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 187/336 (55%), Gaps = 90/336 (26%)
Query: 341 VLRKLLYSLTMTS-FTVSLFFIKRTIPVEKNLLKDACMP--LVLAETQTIDLEVNSVKRL 397
++R + YS TS F + F I+ + + + L+ + L +AE I+ + R
Sbjct: 53 IVRSVHYSFQTTSVFRIPFFPIQLSKIMHVSELQTLHISKLLEMAEEHGIE----NANRF 108
Query: 398 RKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRF 457
RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRF
Sbjct: 109 RKQDLVFAIVRQMMKQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRF 168
Query: 458 NLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK------------------------ 493
NLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 169 NLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLER 228
Query: 494 --------SGKSI------------------------ILQHIAHAITTNHSEAIMIVMLI 521
+G++I +LQ+IAHAIT N+ + +IV+LI
Sbjct: 229 DIKAEENLTGRAIDLVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLI 288
Query: 522 DERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCK 554
DERPEEVTEM RSVRGEV++STFDEPA L + +
Sbjct: 289 DERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITR 348
Query: 555 LARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 349 LARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 384
>gi|268685968|ref|ZP_06152830.1| transcription termination factor Rho [Neisseria gonorrhoeae
SK-93-1035]
gi|268626252|gb|EEZ58652.1| transcription termination factor Rho [Neisseria gonorrhoeae
SK-93-1035]
Length = 419
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PK GK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKIGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 169/295 (57%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKIGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGAAR 305
>gi|59800652|ref|YP_207364.1| transcription termination factor Rho [Neisseria gonorrhoeae FA
1090]
gi|194097908|ref|YP_002000953.1| transcription termination factor Rho [Neisseria gonorrhoeae
NCCP11945]
gi|240015945|ref|ZP_04722485.1| transcription termination factor Rho [Neisseria gonorrhoeae FA6140]
gi|254493103|ref|ZP_05106274.1| transcription termination factor Rho [Neisseria gonorrhoeae 1291]
gi|268594242|ref|ZP_06128409.1| transcription termination factor rho [Neisseria gonorrhoeae 35/02]
gi|268596241|ref|ZP_06130408.1| transcription termination factor rho [Neisseria gonorrhoeae FA19]
gi|268598361|ref|ZP_06132528.1| transcription termination factor Rho [Neisseria gonorrhoeae MS11]
gi|268600717|ref|ZP_06134884.1| transcription termination factor Rho [Neisseria gonorrhoeae PID18]
gi|268603023|ref|ZP_06137190.1| transcription termination factor Rho [Neisseria gonorrhoeae PID1]
gi|268681498|ref|ZP_06148360.1| transcription termination factor Rho [Neisseria gonorrhoeae PID332]
gi|268683728|ref|ZP_06150590.1| transcription termination factor Rho [Neisseria gonorrhoeae
SK-92-679]
gi|293397610|ref|ZP_06641816.1| transcription termination factor Rho [Neisseria gonorrhoeae F62]
gi|385335127|ref|YP_005889074.1| transcription termination factor Rho [Neisseria gonorrhoeae
TCDC-NG08107]
gi|59717547|gb|AAW88952.1| transcription termination factor rho [Neisseria gonorrhoeae FA
1090]
gi|193933198|gb|ACF29022.1| transcription termination factor Rho [Neisseria gonorrhoeae
NCCP11945]
gi|226512143|gb|EEH61488.1| transcription termination factor Rho [Neisseria gonorrhoeae 1291]
gi|268547631|gb|EEZ43049.1| transcription termination factor rho [Neisseria gonorrhoeae 35/02]
gi|268550029|gb|EEZ45048.1| transcription termination factor rho [Neisseria gonorrhoeae FA19]
gi|268582492|gb|EEZ47168.1| transcription termination factor Rho [Neisseria gonorrhoeae MS11]
gi|268584848|gb|EEZ49524.1| transcription termination factor Rho [Neisseria gonorrhoeae PID18]
gi|268587154|gb|EEZ51830.1| transcription termination factor Rho [Neisseria gonorrhoeae PID1]
gi|268621782|gb|EEZ54182.1| transcription termination factor Rho [Neisseria gonorrhoeae PID332]
gi|268624012|gb|EEZ56412.1| transcription termination factor Rho [Neisseria gonorrhoeae
SK-92-679]
gi|291611556|gb|EFF40625.1| transcription termination factor Rho [Neisseria gonorrhoeae F62]
gi|317163670|gb|ADV07211.1| transcription termination factor Rho [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 419
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PK GK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKIGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 169/295 (57%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKIGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGAAR 305
>gi|291044474|ref|ZP_06570183.1| transcription termination factor rho [Neisseria gonorrhoeae DGI2]
gi|291011368|gb|EFE03364.1| transcription termination factor rho [Neisseria gonorrhoeae DGI2]
Length = 421
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 310/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 46 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 105
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 106 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 165
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PK GK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 166 LISPIGKGQRALLVAPPKIGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 225
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 226 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 285
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 286 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 345
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 346 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 392
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 169/295 (57%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 17 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 72
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 73 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 132
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 133 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKIGKTVMLQN 192
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 193 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 252
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 253 KRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGAAR 307
>gi|89901670|ref|YP_524141.1| transcription termination factor Rho [Rhodoferax ferrireducens
T118]
gi|89346407|gb|ABD70610.1| transcription termination factor Rho [Rhodoferax ferrireducens
T118]
Length = 420
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/349 (72%), Positives = 310/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ + GE+IF DG LE+LPDGFGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RARAGEQIFADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K++KVNG PE +K++ +F+NLTPL P K + LE++I++ ENITGRI
Sbjct: 102 RTPKDGERYFALNKLEKVNGGGPEENKHKVMFENLTPLFPNKQMRLEQDIKTDENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQR LLVA PKSGK++++QHIAHAI N+ E M+V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGKGQRALLVAPPKSGKTVMMQHIAHAIAANYPEIHMMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEVIASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGEVIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVDSNALQRPKRF GAARN+EEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLTGGVDSNALQRPKRFLGAARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+P+I LN+SGTRREELL+ + LQK +LR+ LY++
Sbjct: 342 EIHLDRRLYEKRVFPSIQLNRSGTRREELLLAPEILQKTRILRQFLYNM 390
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 92/116 (79%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ + GE+IF DG LE+LPDGFGFLRS ++Y AS+
Sbjct: 17 QAEELEIENTGRMRKQELMFAIIKKRARAGEQIFADGVLEILPDGFGFLRSPDTSYTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K++KVN P+ K ++
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALNKLEKVNGGGPEENKHKVM 132
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAI N+ E M+V+L+DERPEEVTEMQR+V+GEVIASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAIAANYPEIHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVDSNALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQR 296
Query: 582 PKRFFGAAR 590
PKRF GAAR
Sbjct: 297 PKRFLGAAR 305
>gi|421543962|ref|ZP_15990044.1| transcription termination factor Rho [Neisseria meningitidis NM140]
gi|421546085|ref|ZP_15992136.1| transcription termination factor Rho [Neisseria meningitidis NM183]
gi|421548352|ref|ZP_15994378.1| transcription termination factor Rho [Neisseria meningitidis
NM2781]
gi|421552157|ref|ZP_15998137.1| transcription termination factor Rho [Neisseria meningitidis NM576]
gi|402324471|gb|EJU59904.1| transcription termination factor Rho [Neisseria meningitidis NM183]
gi|402324833|gb|EJU60257.1| transcription termination factor Rho [Neisseria meningitidis NM140]
gi|402326283|gb|EJU61686.1| transcription termination factor Rho [Neisseria meningitidis
NM2781]
gi|402332705|gb|EJU68029.1| transcription termination factor Rho [Neisseria meningitidis NM576]
Length = 419
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/338 (73%), Positives = 307/338 (90%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RVPK+ ERYFA
Sbjct: 53 GTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFA 112
Query: 72 LLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQ 131
L+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR IDLI+PIGKGQ
Sbjct: 113 LVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQ 172
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
R LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STF
Sbjct: 173 RALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTF 232
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK+LTGGVD+N
Sbjct: 233 DEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDAN 292
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
AL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEK
Sbjct: 293 ALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEK 352
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 353 RLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 166/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKQNVSFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|264679317|ref|YP_003279224.1| Ktermination factor Rho [Comamonas testosteroni CNB-2]
gi|262209830|gb|ACY33928.1| Ktermination factor Rho [Comamonas testosteroni CNB-2]
Length = 420
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/349 (72%), Positives = 310/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R+PK+GERYFAL K+ KVNG PE +K++ LF+NLTPL PK+ + LER+I+ +ENITGRI
Sbjct: 102 RIPKDGERYFALTKLDKVNGNSPEQNKHKVLFENLTPLFPKEQMRLERDIKGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++Q IAHAIT NH + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTMMMQSIAHAITANHPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+ KDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 SVKGEIIASTFDEPATRHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVDSNALQRPKRFFGAARN+EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDSNALQRPKRFFGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 ELHLNRRLYEKRVFPAIELNKSGTRREELLLPPEILQKTRILRQFMYNM 390
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 100/131 (76%), Gaps = 2/131 (1%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ +V R+RKQELMFAI KK+ K GE++F DG LE+LPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTG + +GE+R+PK+GERYFAL K+ KVN
Sbjct: 62 FGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRIPKDGERYFALTKLDKVNG 121
Query: 490 ASPKSGKSIIL 500
SP+ K +L
Sbjct: 122 NSPEQNKHKVL 132
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++Q IAHAIT NH + ++V+L+DERPEEVTEMQRSV+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTMMMQSIAHAITANHPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVDSNALQR
Sbjct: 237 TRHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|255065610|ref|ZP_05317465.1| transcription termination factor Rho [Neisseria sicca ATCC 29256]
gi|349611228|ref|ZP_08890531.1| transcription termination factor Rho [Neisseria sp. GT4A_CT1]
gi|419798850|ref|ZP_14324237.1| transcription termination factor Rho [Neisseria sicca VK64]
gi|255050435|gb|EET45899.1| transcription termination factor Rho [Neisseria sicca ATCC 29256]
gi|348614256|gb|EGY63809.1| transcription termination factor Rho [Neisseria sp. GT4A_CT1]
gi|385693437|gb|EIG24084.1| transcription termination factor Rho [Neisseria sicca VK64]
Length = 419
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 309/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ K++ LF+NLTPL P K LER+I+++EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIG+GQR LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSV
Sbjct: 164 LVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/283 (44%), Positives = 163/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENANRFRKQDLVFAIVRQMMKQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----------------- 493
P+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 83 PTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPT 142
Query: 494 ---------------SGKSI------------------------ILQHIAHAITTNHSEA 514
+G++I +LQ+IAHAIT N+ +
Sbjct: 143 KQFKLERDIKAEENLTGRAIDLVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDV 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 203 ELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|350571606|ref|ZP_08939925.1| transcription termination factor Rho [Neisseria wadsworthii 9715]
gi|349791460|gb|EGZ45343.1| transcription termination factor Rho [Neisseria wadsworthii 9715]
Length = 419
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 253/347 (72%), Positives = 309/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EG +RV
Sbjct: 44 KQGEDFSCSGTLEILPDGFGFLRSSDTSYLAGPDDIYVSPSQIRRFNLHTGDTIEGTVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+KPE+ K++ LF+NLTPL P K LER+I+++EN+T R ID
Sbjct: 104 PKDNERYFALVRLDAINGDKPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTSRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+APIG GQR L+VA PKSGK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSV
Sbjct: 164 LVAPIGFGQRALVVAPPKSGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMIRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVSSTFDEPASRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMIRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 82/116 (70%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q L + + RLRKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS ++Y+A
Sbjct: 17 QAEQLGIENANRLRKQDLVFAIVRQLMKQGEDFSCSGTLEILPDGFGFLRSSDTSYLAGP 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+ K IL
Sbjct: 77 DDIYVSPSQIRRFNLHTGDTIEGTVRVPKDNERYFALVRLDAINGDKPEVCKHKIL 132
>gi|261364136|ref|ZP_05977019.1| transcription termination factor Rho [Neisseria mucosa ATCC 25996]
gi|288567721|gb|EFC89281.1| transcription termination factor Rho [Neisseria mucosa ATCC 25996]
Length = 419
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 309/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ K++ LF+NLTPL P K LER+I+++EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIG+GQR LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSV
Sbjct: 164 LVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/283 (44%), Positives = 163/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENANRFRKQDLVFAIVRQMMKQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----------------- 493
P+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 83 PTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPT 142
Query: 494 ---------------SGKSI------------------------ILQHIAHAITTNHSEA 514
+G++I +LQ+IAHAIT N+ +
Sbjct: 143 KQFKLERDIKAEENLTGRAIDLVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDV 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 203 ELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|240013507|ref|ZP_04720420.1| transcription termination factor Rho [Neisseria gonorrhoeae DGI18]
gi|240120579|ref|ZP_04733541.1| transcription termination factor Rho [Neisseria gonorrhoeae
PID24-1]
Length = 419
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 309/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +N + PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINDDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PK GK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKIGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 169/295 (57%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINDDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKIGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGAAR 305
>gi|114319529|ref|YP_741212.1| transcription termination factor Rho [Alkalilimnicola ehrlichii
MLHE-1]
gi|114225923|gb|ABI55722.1| transcription termination factor Rho [Alkalilimnicola ehrlichii
MLHE-1]
Length = 418
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/349 (72%), Positives = 310/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG LE+L DGFGFLRS S+YMA DDIY+SPSQIRRF L TGD + G+I
Sbjct: 42 QAKGGEPIYGDGVLEILQDGFGFLRSADSSYMAGPDDIYVSPSQIRRFALRTGDTIAGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ ++N E PE +K++ LF+NLTPLH + + +ER S E++T RI
Sbjct: 102 RPPKDGERYFALLKVNEINFEPPENAKHKVLFENLTPLHATERMRMERGNGSTEDLTARI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGLLV+ PK+GK+++LQHIA +IT NH E +IV+LIDERPEEVTEMQR
Sbjct: 162 IDLIAPIGKGQRGLLVSPPKAGKTMLLQHIAQSITANHPETYLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NAL RPKRFFGAARN+EEGGSL+IIAT+L++TGSRMD+VIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALHRPKRFFGAARNVEEGGSLSIIATSLVDTGSRMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR++EKR+YPA+N+N+SGTRREELL++ D+LQK+W+LRKLL+ +
Sbjct: 342 ELHLDRRISEKRIYPAVNINRSGTRREELLMKPDELQKVWILRKLLHPM 390
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQHIA +IT NH E +IV+LIDERPEEVTEMQRSVRGEV++STFDEPA
Sbjct: 177 VSPPKAGKTMLLQHIAQSITANHPETYLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 82/113 (72%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V R RKQ+++F+I K + K GE I+GDG LE+L DGFGFLRS S+YMA DDI
Sbjct: 20 ELGVEGTARSRKQDVIFSILKSQAKGGEPIYGDGVLEILQDGFGFLRSADSSYMAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRF L TG G+IR PK+GERYFALLK+ ++N P++ K +L
Sbjct: 80 YVSPSQIRRFALRTGDTIAGKIRPPKDGERYFALLKVNEINFEPPENAKHKVL 132
>gi|416158907|ref|ZP_11605607.1| transcription termination factor Rho [Neisseria meningitidis N1568]
gi|433472995|ref|ZP_20430360.1| transcription termination factor Rho [Neisseria meningitidis 97021]
gi|433483536|ref|ZP_20440767.1| transcription termination factor Rho [Neisseria meningitidis
2002038]
gi|433485705|ref|ZP_20442907.1| transcription termination factor Rho [Neisseria meningitidis 97014]
gi|325129209|gb|EGC52053.1| transcription termination factor Rho [Neisseria meningitidis N1568]
gi|432211316|gb|ELK67270.1| transcription termination factor Rho [Neisseria meningitidis 97021]
gi|432221884|gb|ELK77687.1| transcription termination factor Rho [Neisseria meningitidis
2002038]
gi|432223701|gb|ELK79480.1| transcription termination factor Rho [Neisseria meningitidis 97014]
Length = 419
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 309/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T+N+ E +IV+LIDERPEEVTEM SV
Sbjct: 164 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEMSHSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFG ARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGTARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 167/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +LQ+
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKSGKTVMLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHA+T+N+ E +IV+LIDERPEEVTEM SVRGEV++STFDEPA
Sbjct: 191 IAHAVTSNYPEVELIVLLIDERPEEVTEMSHSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFG AR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGTAR 305
>gi|121594699|ref|YP_986595.1| transcription termination factor Rho [Acidovorax sp. JS42]
gi|120606779|gb|ABM42519.1| transcription termination factor Rho [Acidovorax sp. JS42]
Length = 420
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/349 (71%), Positives = 308/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IF DG LE+LPDGFGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQIFADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ VNG PE +K++ +F+NLTPL PK+ + LER I+ +ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDSVNGGPPEQNKHKVMFENLTPLFPKEQMRLEREIKGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 SVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVDSNALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDSNALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLSRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYNM 390
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 113/189 (59%), Gaps = 22/189 (11%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q DLE+ + R+RKQELMFAI KK+ K GE+IF DG LE+LPDGFGFLRS ++Y AS+
Sbjct: 17 QAEDLEIENGGRMRKQELMFAIIKKRAKAGEQIFADGVLEILPDGFGFLRSPDTSYTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIA 504
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN P+ K
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVNGGPPEQNK-------- 128
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVI- 563
+M L P+E ++R ++GE + ++ + R +I
Sbjct: 129 --------HKVMFENLTPLFPKEQMRLEREIKGE---ENITGRIIDIIAPIGRGQRALIV 177
Query: 564 --PASGKVL 570
P SGK +
Sbjct: 178 APPKSGKTV 186
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 94/130 (72%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQRSV+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVDSNALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|222110697|ref|YP_002552961.1| transcription termination factor rho [Acidovorax ebreus TPSY]
gi|221730141|gb|ACM32961.1| transcription termination factor Rho [Acidovorax ebreus TPSY]
Length = 420
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/349 (71%), Positives = 308/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+IF DG LE+LPDGFGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQIFADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ VNG PE +K++ +F+NLTPL PK+ + LER I+ +ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDSVNGGPPEQNKHKVMFENLTPLFPKEQMRLEREIKGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 SVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVDSNALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDSNALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLSRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYNM 390
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 113/189 (59%), Gaps = 22/189 (11%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q DLE+ + R+RKQELMFAI KK+ K GE+IF DG LE+LPDGFGFLRS ++Y AS+
Sbjct: 17 QAEDLEIENGGRMRKQELMFAIIKKRAKAGEQIFADGVLEILPDGFGFLRSPDTSYTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIA 504
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN P+ K
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVNGGPPEQNK-------- 128
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVI- 563
+M L P+E ++R ++GE + ++ + R +I
Sbjct: 129 --------HKVMFENLTPLFPKEQMRLEREIKGE---ENITGRIIDIIAPIGRGQRALIV 177
Query: 564 --PASGKVL 570
P SGK +
Sbjct: 178 APPKSGKTV 186
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 94/130 (72%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQRSV+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVDSNALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|221066135|ref|ZP_03542240.1| transcription termination factor Rho [Comamonas testosteroni KF-1]
gi|299532277|ref|ZP_07045670.1| transcription termination factor Rho [Comamonas testosteroni S44]
gi|418532337|ref|ZP_13098245.1| transcription termination factor Rho [Comamonas testosteroni ATCC
11996]
gi|220711158|gb|EED66526.1| transcription termination factor Rho [Comamonas testosteroni KF-1]
gi|298719685|gb|EFI60649.1| transcription termination factor Rho [Comamonas testosteroni S44]
gi|371450568|gb|EHN63612.1| transcription termination factor Rho [Comamonas testosteroni ATCC
11996]
Length = 420
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/349 (71%), Positives = 309/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R+PK+GERYFAL K+ KVNG PE +K++ LF+NLTPL PK+ + LER+I+ +ENITGRI
Sbjct: 102 RIPKDGERYFALTKLDKVNGGPPEQNKHKVLFENLTPLFPKEQMRLERDIKGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++Q IAHAIT NH + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTMMMQSIAHAITANHPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+ KDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 SVKGEIIASTFDEPATRHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVDSNALQRPKRFFGAARN+EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDSNALQRPKRFFGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI L KSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 ELHLNRRLYEKRVFPAIELTKSGTRREELLLAPEILQKTRILRQFMYNM 390
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 99/131 (75%), Gaps = 2/131 (1%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ +V R+RKQELMFAI KK+ K GE++F DG LE+LPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTG + +GE+R+PK+GERYFAL K+ KVN
Sbjct: 62 FGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRIPKDGERYFALTKLDKVNG 121
Query: 490 ASPKSGKSIIL 500
P+ K +L
Sbjct: 122 GPPEQNKHKVL 132
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++Q IAHAIT NH + ++V+L+DERPEEVTEMQRSV+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTMMMQSIAHAITANHPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVDSNALQR
Sbjct: 237 TRHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|548731|sp|Q06447.1|RHO_NEIGO RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|49365|emb|CAA79853.1| /Rho factor [Neisseria gonorrhoeae]
Length = 419
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 309/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PK GK+++L++IAH +T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKIGKTVMLENIAHEVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRIAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +L++
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKIGKTVMLEN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH +T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHEVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGAAR 305
>gi|3421338|emb|CAA11675.1| rho [Neisseria polysaccharea]
Length = 342
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/338 (74%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P K L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELLI +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLIPNDQLQRMW 342
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 151/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHAIT N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|3421248|emb|CAA11638.1| rho [Neisseria lactamica]
gi|3421250|emb|CAA11639.1| rho [Neisseria lactamica]
gi|3421268|emb|CAA11676.1| rho [Neisseria lactamica]
gi|3421270|emb|CAA11677.1| rho [Neisseria lactamica]
gi|3421272|emb|CAA11678.1| rho [Neisseria lactamica]
gi|3421330|emb|CAA11671.1| rho [Neisseria polysaccharea]
gi|3425935|emb|CAA11644.1| rho [Neisseria cinerea]
gi|3425937|emb|CAA11645.1| rho [Neisseria cinerea]
gi|3425941|emb|CAA11666.1| rho [Neisseria cinerea]
Length = 342
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P K L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 151/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHAIT N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|239815305|ref|YP_002944215.1| transcription termination factor Rho [Variovorax paradoxus S110]
gi|239801882|gb|ACS18949.1| transcription termination factor Rho [Variovorax paradoxus S110]
Length = 421
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/350 (72%), Positives = 310/350 (88%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERN-IESKENITGR 119
R PK+GERYFAL K+ KVN PE +K++ +F+NLTPL PK+ + LER+ I+S ENITGR
Sbjct: 102 RTPKDGERYFALTKLDKVNDGPPEQNKHKVMFENLTPLFPKEQMKLERDGIKSDENITGR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
IID+IAPIGKGQR LLVA PKSGK++++QHIAHAI+ N+ E M+V+L+DERPEEVTEMQ
Sbjct: 162 IIDIIAPIGKGQRALLVAPPKSGKTVMMQHIAHAISANYPEVHMMVLLVDERPEEVTEMQ 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
R+V+GEVIASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+
Sbjct: 222 RTVKGEVIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPS 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVDSNALQRPKRF GAARN+EEGGSLTII TALI+TGSRMD+VI+EEFKGTGN
Sbjct: 282 SGKVLTGGVDSNALQRPKRFLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+P+I LN+SGTRREELL+ + LQK +LR+L+Y++
Sbjct: 342 SEIHLDRRLYEKRVFPSIQLNRSGTRREELLLAPEILQKTRILRQLMYNM 391
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 98/131 (74%), Gaps = 2/131 (1%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ +V R+RKQELMFAI KK+ K GE++F DG LE+LPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS +++ AS+DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ KVN
Sbjct: 62 FGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVND 121
Query: 490 ASPKSGKSIIL 500
P+ K ++
Sbjct: 122 GPPEQNKHKVM 132
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAI+ N+ E M+V+L+DERPEEVTEMQR+V+GEVIASTFDEPA
Sbjct: 178 VAPPKSGKTVMMQHIAHAISANYPEVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVDSNALQR
Sbjct: 238 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQR 297
Query: 582 PKRFFGAAR 590
PKRF GAAR
Sbjct: 298 PKRFLGAAR 306
>gi|298369405|ref|ZP_06980723.1| transcription termination factor Rho [Neisseria sp. oral taxon 014
str. F0314]
gi|298283408|gb|EFI24895.1| transcription termination factor Rho [Neisseria sp. oral taxon 014
str. F0314]
Length = 419
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 306/347 (88%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EG +RV
Sbjct: 44 KQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPSQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +N + PE K++ LF+NLTPL P K LER+I+++EN+T R ID
Sbjct: 104 PKDNERYFALVRLDSINCDDPEACKHKILFENLTPLFPTKQFKLERDIKAEENLTSRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIG+GQR LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSV
Sbjct: 164 LVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGK+LTGGVD+NAL R
Sbjct: 237 QRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + RLRKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENANRLRKQDLVFAIVRQMMKQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P++ K IL
Sbjct: 83 PSQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINCDDPEACKHKIL 132
>gi|3421254|emb|CAA11641.1| rho [Neisseria lactamica]
Length = 342
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 249/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P K L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 151/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHA+T N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|225076611|ref|ZP_03719810.1| hypothetical protein NEIFLAOT_01661 [Neisseria flavescens
NRL30031/H210]
gi|241759413|ref|ZP_04757517.1| transcription termination factor Rho [Neisseria flavescens SK114]
gi|261379970|ref|ZP_05984543.1| transcription termination factor Rho [Neisseria subflava NJ9703]
gi|224952111|gb|EEG33320.1| hypothetical protein NEIFLAOT_01661 [Neisseria flavescens
NRL30031/H210]
gi|241320195|gb|EER56528.1| transcription termination factor Rho [Neisseria flavescens SK114]
gi|284797169|gb|EFC52516.1| transcription termination factor Rho [Neisseria subflava NJ9703]
Length = 419
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 245/338 (72%), Positives = 307/338 (90%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RVPK+ ERYFA
Sbjct: 53 GTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFA 112
Query: 72 LLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQ 131
L+++ +NG++PE+ K++ LF+NLTPL P + LER+I+++EN+TGR IDL++PIGKGQ
Sbjct: 113 LVRLDTINGDQPEVCKHKILFENLTPLFPTEQFKLERDIKAEENLTGRAIDLVSPIGKGQ 172
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
R LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STF
Sbjct: 173 RALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTF 232
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK+LTGGVD+N
Sbjct: 233 DEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDAN 292
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
AL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEK
Sbjct: 293 ALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEK 352
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R++PAI++NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 353 RLFPAISINKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/283 (43%), Positives = 161/283 (56%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+L+FAI ++ K G+LE+LPDGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENANRFRKQDLVFAIVRQMMKQNVSFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----------------- 493
P+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 83 PTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDQPEVCKHKILFENLTPLFPT 142
Query: 494 ---------------SGKSI------------------------ILQHIAHAITTNHSEA 514
+G++I +LQ+IAHAIT N+ +
Sbjct: 143 EQFKLERDIKAEENLTGRAIDLVSPIGKGQRALLVAPPKTGKTVMLQNIAHAITANYPDV 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 203 ELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|3581830|emb|CAA11640.1| rho [Neisseria lactamica]
Length = 341
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 249/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 4 KKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 63
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P K L LER+++S+EN+TGR ID
Sbjct: 64 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTGRAID 123
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 124 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 183
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 184 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 243
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 244 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 303
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 304 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 341
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 149/262 (56%), Gaps = 83/262 (31%)
Query: 412 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRV 471
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G +RV
Sbjct: 4 KKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 63
Query: 472 PKNGERYFALLKIKKVNVASPK--------------------------------SGKSI- 498
PK+ ERYFAL+++ +N P+ +G++I
Sbjct: 64 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTGRAID 123
Query: 499 -----------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 535
+LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 124 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 183
Query: 536 RGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIPASGK 568
RGEV++STFDEPA L + +LARAYNTV+P SGK
Sbjct: 184 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 243
Query: 569 VLTGGVDSNALQRPKRFFGAAR 590
+LTGGVD+NAL RPKRFFGAAR
Sbjct: 244 ILTGGVDANALHRPKRFFGAAR 265
>gi|3421306|emb|CAA11663.1| rho [Neisseria meningitidis]
Length = 342
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LERN++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERNLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 151/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERNLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHAIT N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|404379199|ref|ZP_10984265.1| transcription termination factor Rho [Simonsiella muelleri ATCC
29453]
gi|294483544|gb|EFG31229.1| transcription termination factor Rho [Simonsiella muelleri ATCC
29453]
Length = 440
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 308/347 (88%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K G G+LE+LPDG+GFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KDGREFICSGTLEILPDGYGFLRSSITSYLACPDDIYVSPNQIRRFNLHTGDTIEGTVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PKN E+YFAL+++ VNG+ PE +++ LF+NLTPL P K L LER+I+S +NITGRIID
Sbjct: 104 PKNDEKYFALVRLDTVNGDHPEKCRHKILFENLTPLFPNKQLKLERDIQSVDNITGRIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIG GQR LLVA PK+GK+++LQ+IAHAIT N+ + ++IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGLGQRALLVAPPKTGKTVMLQNIAHAITANNPDVMLIVLLIDERPEEVTEMMRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVI+EEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIFEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+LERRLAEKR++PAIN+NKSGTRREELL+ ++LQ++W LR++++S+
Sbjct: 344 NLERRLAEKRIFPAININKSGTRREELLVPQEQLQRMWALRRVVHSM 390
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IAHAIT N+ + ++IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VAPPKTGKTVMLQNIAHAITANNPDVMLIVLLIDERPEEVTEMMRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGKVLTGGVD+NAL R
Sbjct: 237 QRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 81/117 (69%)
Query: 384 TQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMAS 443
TQ + + + RLRKQ+L+F I ++ K G G+LE+LPDG+GFLRS ++Y+A
Sbjct: 16 TQAEQMGIENANRLRKQDLVFTIVREMMKDGREFICSGTLEILPDGYGFLRSSITSYLAC 75
Query: 444 SDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SP+QIRRFNLHTG +G +RVPKN E+YFAL+++ VN P+ + IL
Sbjct: 76 PDDIYVSPNQIRRFNLHTGDTIEGTVRVPKNDEKYFALVRLDTVNGDHPEKCRHKIL 132
>gi|88812431|ref|ZP_01127680.1| transcription termination factor Rho [Nitrococcus mobilis Nb-231]
gi|88790217|gb|EAR21335.1| transcription termination factor Rho [Nitrococcus mobilis Nb-231]
Length = 418
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/349 (73%), Positives = 309/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG LE+L DGFGFLRS S+YMA DDIY+SPSQIRRF+L TGD V G+I
Sbjct: 42 QAKKGEDIWGDGVLEILQDGFGFLRSADSSYMAGPDDIYVSPSQIRRFSLRTGDTVAGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GERYFALLK+ ++N EKPE ++++ LF+NLTPL K L +ER S E++T RI
Sbjct: 102 RPPKEGERYFALLKVNEINFEKPEAARHKVLFENLTPLFAKSRLKMERGNGSTEDLTARI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGL+V+ PK+GK+++LQ+IA +IT+N+ E +IV+LIDERPEEVTEMQR
Sbjct: 162 IDLVAPIGKGQRGLVVSPPKAGKTMMLQNIAQSITSNYPECYVIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR++EKR+YP+IN+N+SGTRREELL+ D+LQK W+LRKLL+ +
Sbjct: 342 ELHLDRRISEKRIYPSININRSGTRREELLMGPDELQKAWILRKLLHPM 390
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/285 (47%), Positives = 169/285 (59%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + + R RKQ+++F+I K + K GE I+GDG LE+L DGFGFLRS S+YMA DDIY
Sbjct: 21 LGIEGMARSRKQDVIFSILKAQAKKGEDIWGDGVLEILQDGFGFLRSADSSYMAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL--------------------------- 481
+SPSQIRRF+L TG G+IR PK GERYFAL
Sbjct: 81 VSPSQIRRFSLRTGDTVAGKIRPPKEGERYFALLKVNEINFEKPEAARHKVLFENLTPLF 140
Query: 482 ----LKIKKVN-------------------------VASPKSGKSIILQHIAHAITTNHS 512
LK+++ N V+ PK+GK+++LQ+IA +IT+N+
Sbjct: 141 AKSRLKMERGNGSTEDLTARIIDLVAPIGKGQRGLVVSPPKAGKTMMLQNIAQSITSNYP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVTEMQRSVRGEV++STFDEPA
Sbjct: 201 ECYVIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKQDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|332530637|ref|ZP_08406570.1| transcription termination factor Rho [Hylemonella gracilis ATCC
19624]
gi|332039920|gb|EGI76313.1| transcription termination factor Rho [Hylemonella gracilis ATCC
19624]
Length = 421
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/350 (71%), Positives = 310/350 (88%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE ++ DG LE+LPDGFGFLRS S+Y AS+DDIY+SPSQ+RRFNLHTGD +EG++
Sbjct: 42 RAKAGETVYADGVLEILPDGFGFLRSPDSSYTASTDDIYISPSQVRRFNLHTGDLIEGDV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERN-IESKENITGR 119
R PK+GERYFAL K+ KVNG PE +K++ +F+NLTPL PK + LE++ ++S ENITGR
Sbjct: 102 RTPKDGERYFALNKLDKVNGGAPEQNKHKVMFENLTPLFPKVQMKLEQDGLKSDENITGR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
IID+IAPIGKGQR LLVA PKSGK++++QHIAHAI+ N+ E M+V+L+DERPEEVTEMQ
Sbjct: 162 IIDIIAPIGKGQRALLVAPPKSGKTVMMQHIAHAISANYPETYMMVLLVDERPEEVTEMQ 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
R+V+GEVIASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+
Sbjct: 222 RTVKGEVIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPS 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRF GAARN+EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 SGKVLTGGVDANALQRPKRFLGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+P+I L++SGTRREELL+Q + LQK +LR+ LY++
Sbjct: 342 SEIHLDRRLYEKRVFPSIQLSRSGTRREELLLQPEILQKTRILRQFLYNM 391
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 90/116 (77%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q LE+ + R+RKQELMFAI KK+ K GE ++ DG LE+LPDGFGFLRS S+Y AS+
Sbjct: 17 QAEALEIENTGRMRKQELMFAIIKKRAKAGETVYADGVLEILPDGFGFLRSPDSSYTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQ+RRFNLHTG L +G++R PK+GERYFAL K+ KVN +P+ K ++
Sbjct: 77 DDIYISPSQVRRFNLHTGDLIEGDVRTPKDGERYFALNKLDKVNGGAPEQNKHKVM 132
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAI+ N+ E M+V+L+DERPEEVTEMQR+V+GEVIASTFDEPA
Sbjct: 178 VAPPKSGKTVMMQHIAHAISANYPETYMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 238 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRF GAAR
Sbjct: 298 PKRFLGAAR 306
>gi|120611306|ref|YP_970984.1| transcription termination factor Rho [Acidovorax citrulli AAC00-1]
gi|120589770|gb|ABM33210.1| transcription termination factor Rho [Acidovorax citrulli AAC00-1]
Length = 420
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 249/349 (71%), Positives = 308/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ VNG PE +K++ +F+NLTPL PK+ + LER+++ ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDAVNGGPPEQNKHKVMFENLTPLFPKEQMKLERDMKGDENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTMMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVDSNALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDSNALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ LY++
Sbjct: 342 EIHLNRRLYEKRVFPAIELNKSGTRREELLLPPEILQKTRILRQFLYNM 390
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 114/189 (60%), Gaps = 22/189 (11%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ K GE++F DG LE+LPDGFGFLRS ++Y AS+
Sbjct: 17 QAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDGFGFLRSPDTSYTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIA 504
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN P+ K
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDAVNGGPPEQNK-------- 128
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVI- 563
+M L P+E +++R ++G+ + ++ + R +I
Sbjct: 129 --------HKVMFENLTPLFPKEQMKLERDMKGD---ENITGRIIDIIAPIGRGQRALIV 177
Query: 564 --PASGKVL 570
P SGK +
Sbjct: 178 APPKSGKTM 186
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 94/130 (72%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR+V+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTMMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVDSNALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|3425939|emb|CAA11646.1| rho [Neisseria cinerea]
Length = 342
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/338 (73%), Positives = 302/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P K L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV +STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVFSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 150/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTKQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHAIT N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV +STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVFSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|386829359|ref|ZP_10116466.1| transcription termination factor Rho [Beggiatoa alba B18LD]
gi|386430243|gb|EIJ44071.1| transcription termination factor Rho [Beggiatoa alba B18LD]
Length = 418
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/348 (73%), Positives = 300/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNLHTGD V G+IR
Sbjct: 43 AKKGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLHTGDTVSGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ ++N E PE +KN+ LF+NLTPL LE S E++T RII
Sbjct: 103 PPKEGERYFALLKVSEINFEAPEQAKNKVLFENLTPLFANDRFRLELGNGSTEDVTPRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DLIAPIGKGQRG++V+SPKSGK+++LQ IAH+I NH E +IV+LIDERPEEVTEM RS
Sbjct: 163 DLIAPIGKGQRGMIVSSPKSGKTMMLQSIAHSIAINHPECYLIVLLIDERPEEVTEMMRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNT++P+SG
Sbjct: 223 VKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMDDVIYEEFKGTGN E
Sbjct: 283 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNNE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL+R +AEKR+YPAIN+N+SGTRREELL+ D LQK W+LRKLL +
Sbjct: 343 LHLDREIAEKRIYPAININRSGTRREELLVSADDLQKTWILRKLLQPM 390
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+SPKSGK+++LQ IAH+I NH E +IV+LIDERPEEVTEM RSV+GEV++STFDEPA
Sbjct: 177 VSSPKSGKTMMLQSIAHSIAINHPECYLIVLLIDERPEEVTEMMRSVKGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNT++P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 83/113 (73%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL + R RKQ+++FA+ K K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 DLGLEGTARARKQDIIFALLKAHAKKGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNLHTG G+IR PK GERYFALLK+ ++N +P+ K+ +L
Sbjct: 80 YVSPSQIRRFNLHTGDTVSGKIRPPKEGERYFALLKVSEINFEAPEQAKNKVL 132
>gi|319639322|ref|ZP_07994073.1| transcription termination factor rho [Neisseria mucosa C102]
gi|317399506|gb|EFV80176.1| transcription termination factor rho [Neisseria mucosa C102]
Length = 419
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 245/338 (72%), Positives = 306/338 (90%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RVPK+ ERYFA
Sbjct: 53 GTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFA 112
Query: 72 LLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQ 131
L+++ +NG+ PE+ K++ LF+NLTPL P + LER+I+++EN+TGR IDL++PIGKGQ
Sbjct: 113 LVRLDTINGDPPEVCKHKILFENLTPLFPTEQFKLERDIKAEENLTGRAIDLVSPIGKGQ 172
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
R LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STF
Sbjct: 173 RALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTF 232
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK+LTGGVD+N
Sbjct: 233 DEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDAN 292
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
AL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEK
Sbjct: 293 ALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEK 352
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R++PAI++NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 353 RLFPAISINKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/283 (43%), Positives = 161/283 (56%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+L+FAI ++ K G+LE+LPDGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENANRFRKQDLVFAIVRQMMKQNVSFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----------------- 493
P+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 83 PTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTINGDPPEVCKHKILFENLTPLFPT 142
Query: 494 ---------------SGKSI------------------------ILQHIAHAITTNHSEA 514
+G++I +LQ+IAHAIT N+ +
Sbjct: 143 EQFKLERDIKAEENLTGRAIDLVSPIGKGQRALLVAPPKTGKTVMLQNIAHAITANYPDV 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 203 ELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|3425943|emb|CAA11670.1| rho [Neisseria animalis]
Length = 342
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 250/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EG +RV
Sbjct: 5 KQGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPSQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ K++ LF+NLTPL P K L LER+I+++ENITGR ID
Sbjct: 65 PKDNERYFALVRLDSINGDNPEVCKHKILFENLTPLFPTKQLKLERDIKAEENITGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIGKGQR LLVA PK+GK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LVSPIGKGQRALLVAPPKTGKTVMLQNIAHAITGNYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPATRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAI++NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAISINKSGTRREELLVPNDQLQRMW 342
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 152/266 (57%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTG +G
Sbjct: 1 RQMMKQGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPSQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N +P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDNPEVCKHKILFENLTPLFPTKQLKLERDIKAEENITG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHAIT N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLVSPIGKGQRALLVAPPKTGKTVMLQNIAHAITGNYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPATRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|3421332|emb|CAA11672.1| rho [Neisseria polysaccharea]
gi|3421334|emb|CAA11673.1| rho [Neisseria polysaccharea]
gi|3421336|emb|CAA11674.1| rho [Neisseria polysaccharea]
Length = 342
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHAIT N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 151/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHAIT N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAITANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|3421290|emb|CAA11643.1| rho [Neisseria meningitidis]
gi|3421298|emb|CAA11659.1| rho [Neisseria meningitidis]
gi|3421300|emb|CAA11660.1| rho [Neisseria meningitidis]
Length = 342
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/338 (73%), Positives = 304/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T+N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 152/266 (57%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHA+T+N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|160900338|ref|YP_001565920.1| transcription termination factor Rho [Delftia acidovorans SPH-1]
gi|333913588|ref|YP_004487320.1| transcription termination factor Rho [Delftia sp. Cs1-4]
gi|160365922|gb|ABX37535.1| transcription termination factor Rho [Delftia acidovorans SPH-1]
gi|333743788|gb|AEF88965.1| transcription termination factor Rho [Delftia sp. Cs1-4]
Length = 420
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 250/349 (71%), Positives = 306/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ VNG PE +K++ LF+NLTPL P + L LER I+ +ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDSVNGGSPEQNKHKVLFENLTPLFPTQQLRLEREIKGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++Q IAH+IT NH + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTMMMQSIAHSITANHPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 SVKGEIIASTFDEPATRHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVDSNALQRPKRFFGAARN+EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDSNALQRPKRFFGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+ L RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 ELALNRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYNM 390
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 98/131 (74%), Gaps = 2/131 (1%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ +V R+RKQELMFAI KK+ K GE++F DG LE+LPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN
Sbjct: 62 FGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVNG 121
Query: 490 ASPKSGKSIIL 500
SP+ K +L
Sbjct: 122 GSPEQNKHKVL 132
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++Q IAH+IT NH + ++V+L+DERPEEVTEMQRSV+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTMMMQSIAHSITANHPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVDSNALQR
Sbjct: 237 TRHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|3421310|emb|CAA11665.1| rho [Neisseria meningitidis]
Length = 342
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTQQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 151/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTQQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHA+T N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|329119370|ref|ZP_08248056.1| transcription termination factor Rho [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464515|gb|EGF10814.1| transcription termination factor Rho [Neisseria bacilliformis ATCC
BAA-1200]
Length = 419
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 306/345 (88%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RVPK
Sbjct: 46 GEDFNCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPNQIRRFNLHTGDTIEGTVRVPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
N ERYFAL+ + +NG+ PE+ +++ LF+NLTPL P K LER+I+++EN+T R IDL+
Sbjct: 106 NDERYFALVYLNSINGDDPEVCRHKILFENLTPLFPTKQFKLERDIKAEENLTSRAIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIG+GQR LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRG
Sbjct: 166 SPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK+L
Sbjct: 226 EVVSSTFDEPATRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKIL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL
Sbjct: 286 TGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 346 DRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGK+LTGGVD++AL R
Sbjct: 237 TRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDAHALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 81/116 (69%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +L + + RLRKQ+L+FAI ++ GE G+LE+LPDGFGFLRS ++Y+A
Sbjct: 17 QAEELGIENANRLRKQDLVFAIVRQLMMQGEDFNCSGTLEILPDGFGFLRSADTSYLAGP 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SP+QIRRFNLHTG +G +RVPKN ERYFAL+ + +N P+ + IL
Sbjct: 77 DDIYVSPNQIRRFNLHTGDTIEGTVRVPKNDERYFALVYLNSINGDDPEVCRHKIL 132
>gi|292493698|ref|YP_003529137.1| transcription termination factor Rho [Nitrosococcus halophilus Nc4]
gi|291582293|gb|ADE16750.1| transcription termination factor Rho [Nitrosococcus halophilus Nc4]
Length = 418
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/344 (74%), Positives = 301/344 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+G G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD +EG+IR
Sbjct: 44 KNGEDIYGSGVLELLQDGFGFLRSASASYLAGPDDIYVSPSQIRRFGLRTGDTIEGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N E PE S+N+ LF+NLTPL + L+LER S E++T R+ID
Sbjct: 104 PKEGERYFALLKVNNINFEPPEQSRNKVLFENLTPLFANERLVLERGNGSTEDLTPRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LIAPIGKGQRGL+V+SPKSGK+++LQ+IA +IT NH E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LIAPIGKGQRGLIVSSPKSGKTVMLQNIAQSITANHPECYLIVLLIDERPEEVTEMARSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HLER+L+EKR+YPAIN+N+SGTRREELL + LQK W+L KLL
Sbjct: 344 HLERKLSEKRIYPAININRSGTRREELLTNPEDLQKTWILHKLL 387
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+SPKSGK+++LQ+IA +IT NH E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VSSPKSGKTVMLQNIAQSITANHPECYLIVLLIDERPEEVTEMARSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 87/129 (67%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +L Q++ LE + RLR+Q+L+FA+ K K GE I+G G LE+L DGFG
Sbjct: 6 LKTKSASELLDIAQSMGLE--GMSRLRRQDLIFALLKAHAKNGEDIYGSGVLELLQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +N
Sbjct: 64 FLRSASASYLAGPDDIYVSPSQIRRFGLRTGDTIEGKIRPPKEGERYFALLKVNNINFEP 123
Query: 492 PKSGKSIIL 500
P+ ++ +L
Sbjct: 124 PEQSRNKVL 132
>gi|407789704|ref|ZP_11136803.1| transcription termination factor Rho [Gallaecimonas xiamenensis
3-C-1]
gi|407205911|gb|EKE75874.1| transcription termination factor Rho [Gallaecimonas xiamenensis
3-C-1]
Length = 421
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/348 (72%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE S+N+ LF+NLTPLH + +ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKVSEVNFDRPESSRNKILFENLTPLHANSRMRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+I+LQ+IA +IT NH EA +IV+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTILLQNIAQSITYNHPEASLIVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++D+LQK+W+LRK+L+ +
Sbjct: 343 LHLSRKIAEKRVFPAIDFNRSGTRREELLCREDELQKMWILRKILHPM 390
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +IT NH EA +IV+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAQSITYNHPEASLIVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A + LE ++ R RKQ+++FAI K K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELVALADQMGLE--NMARARKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVSEVNFDR 123
Query: 492 PKSGKSIIL 500
P+S ++ IL
Sbjct: 124 PESSRNKIL 132
>gi|319793171|ref|YP_004154811.1| transcription termination factor rho [Variovorax paradoxus EPS]
gi|315595634|gb|ADU36700.1| transcription termination factor Rho [Variovorax paradoxus EPS]
Length = 421
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 250/350 (71%), Positives = 310/350 (88%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERN-IESKENITGR 119
R PK+GERYFAL K+ KVN PE +K++ +F+NLTPL PK+ + LER+ ++ +ENITGR
Sbjct: 102 RTPKDGERYFALTKLDKVNDGPPEQNKHKVMFENLTPLFPKEQMKLERDGVKGEENITGR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
IID+IAPIGKGQR LLVA PKSGK++++QHIAHAI+ N+ + M+V+L+DERPEEVTEMQ
Sbjct: 162 IIDIIAPIGKGQRALLVAPPKSGKTVMMQHIAHAISANYPDVHMMVLLVDERPEEVTEMQ 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
R+V+GEVIASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+
Sbjct: 222 RTVKGEVIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPS 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVDSNALQRPKRF GAARN+EEGGSLTII TALI+TGSRMD+VI+EEFKGTGN
Sbjct: 282 SGKVLTGGVDSNALQRPKRFLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+P+I LN+SGTRREELL+ + LQK +LR+L+Y++
Sbjct: 342 SEIHLDRRLYEKRVFPSIQLNRSGTRREELLLAPEILQKTRILRQLMYNM 391
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 98/131 (74%), Gaps = 2/131 (1%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ +V R+RKQELMFAI KK+ K GE++F DG LE+LPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS +++ AS+DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ KVN
Sbjct: 62 FGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVND 121
Query: 490 ASPKSGKSIIL 500
P+ K ++
Sbjct: 122 GPPEQNKHKVM 132
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAI+ N+ + M+V+L+DERPEEVTEMQR+V+GEVIASTFDEPA
Sbjct: 178 VAPPKSGKTVMMQHIAHAISANYPDVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVDSNALQR
Sbjct: 238 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQR 297
Query: 582 PKRFFGAAR 590
PKRF GAAR
Sbjct: 298 PKRFLGAAR 306
>gi|398811551|ref|ZP_10570347.1| transcription termination factor Rho [Variovorax sp. CF313]
gi|398080376|gb|EJL71191.1| transcription termination factor Rho [Variovorax sp. CF313]
Length = 421
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/350 (71%), Positives = 309/350 (88%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERN-IESKENITGR 119
R PK+GERYFAL K+ KVN PE +K++ +F+NLTPL PK+ + LER+ I+ ENITGR
Sbjct: 102 RTPKDGERYFALTKLDKVNDGPPEQNKHKVMFENLTPLFPKEQMKLERDGIKGDENITGR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
IID+IAPIGKGQR LLVA PKSGK++++QHIAHAI+ N+ + M+V+L+DERPEEVTEMQ
Sbjct: 162 IIDIIAPIGKGQRALLVAPPKSGKTVMMQHIAHAISANYPDVHMMVLLVDERPEEVTEMQ 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
R+V+GEVIASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+
Sbjct: 222 RTVKGEVIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPS 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVDSNALQRPKRF GAARN+EEGGSLTII TALI+TGSRMD+VI+EEFKGTGN
Sbjct: 282 SGKVLTGGVDSNALQRPKRFLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+P+I LN+SGTRREELL+ + LQK +LR+L+Y++
Sbjct: 342 SEIHLDRRLYEKRVFPSIQLNRSGTRREELLLAPEILQKTRILRQLMYNM 391
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 98/131 (74%), Gaps = 2/131 (1%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ +V R+RKQELMFAI KK+ K GE++F DG LE+LPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS +++ AS+DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ KVN
Sbjct: 62 FGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVND 121
Query: 490 ASPKSGKSIIL 500
P+ K ++
Sbjct: 122 GPPEQNKHKVM 132
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAI+ N+ + M+V+L+DERPEEVTEMQR+V+GEVIASTFDEPA
Sbjct: 178 VAPPKSGKTVMMQHIAHAISANYPDVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVDSNALQR
Sbjct: 238 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQR 297
Query: 582 PKRFFGAAR 590
PKRF GAAR
Sbjct: 298 PKRFLGAAR 306
>gi|381401691|ref|ZP_09926584.1| transcription termination factor Rho [Kingella kingae PYKK081]
gi|380833250|gb|EIC13125.1| transcription termination factor Rho [Kingella kingae PYKK081]
Length = 454
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 256/348 (73%), Positives = 303/348 (87%), Gaps = 1/348 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K G+ G+LE LPDG+GFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KDGQEFICSGTLETLPDGYGFLRSAATSYLACPDDIYVSPNQIRRFNLHTGDTIEGTVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLER-NIESKENITGRII 121
PKN E+YFAL+++ VN PE S+++ LF+NLTPL P K L LER N S ENITGRII
Sbjct: 104 PKNDEKYFALVRVDSVNSNNPESSRHKILFENLTPLFPTKQLKLERENDLSAENITGRII 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DLI+PIG GQR LLVA PKSGK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RS
Sbjct: 164 DLISPIGLGQRALLVAPPKSGKTVMLQNIAHAITANNPDVELIVLLIDERPEEVTEMTRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SG
Sbjct: 224 VRGEVVASTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN EEGGSLTIIATAL++TGSRMDDVI+EEFKGTGNME
Sbjct: 284 KVLTGGVDANALHRPKRFFGAARNTEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++LERRLAEKRV+PAIN+NKSGTRREELL+ D+LQ+IWVLR++L+ +
Sbjct: 344 LNLERRLAEKRVFPAININKSGTRREELLVPSDQLQRIWVLRRVLHPM 391
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/295 (45%), Positives = 172/295 (58%), Gaps = 86/295 (29%)
Query: 380 VLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSN 439
+LA+ + + +E + RLRKQ+L+F I ++ K G+ G+LE LPDG+GFLRS ++
Sbjct: 14 LLAQAEQMGIE--NANRLRKQDLVFTIVRELMKDGQEFICSGTLETLPDGYGFLRSAATS 71
Query: 440 YMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL------------------ 481
Y+A DDIY+SP+QIRRFNLHTG +G +RVPKN E+YFAL
Sbjct: 72 YLACPDDIYVSPNQIRRFNLHTGDTIEGTVRVPKNDEKYFALVRVDSVNSNNPESSRHKI 131
Query: 482 -------------LKIKKVN--------------------------VASPKSGKSIILQH 502
LK+++ N VA PKSGK+++LQ+
Sbjct: 132 LFENLTPLFPTKQLKLERENDLSAENITGRIIDLISPIGLGQRALLVAPPKSGKTVMLQN 191
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 192 IAHAITANNPDVELIVLLIDERPEEVTEMTRSVRGEVVASTFDEPAQRHVQVAEMVIEKA 251
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 252 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKVLTGGVDANALHRPKRFFGAAR 306
>gi|3421288|emb|CAA11642.1| rho [Neisseria meningitidis]
gi|3421296|emb|CAA11658.1| rho [Neisseria meningitidis]
gi|3421304|emb|CAA11662.1| rho [Neisseria meningitidis]
gi|3421308|emb|CAA11664.1| rho [Neisseria meningitidis]
Length = 342
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 151/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHA+T N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|3421286|emb|CAA11637.1| rho [Neisseria perflava]
Length = 342
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 151/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHA+T N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|365096733|ref|ZP_09331176.1| transcription termination factor Rho [Acidovorax sp. NO-1]
gi|363413759|gb|EHL20951.1| transcription termination factor Rho [Acidovorax sp. NO-1]
Length = 420
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 247/349 (70%), Positives = 309/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ KVN PE +K++ +F+NLTPL PK+ + LER+I+S+ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDKVNDGPPEQNKHKVMFENLTPLFPKEHMRLERDIKSEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+ ALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDAAALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLNRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYNM 390
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 91/116 (78%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ K GE++F DG LE+LPDGFGFLRS +++ AS+
Sbjct: 17 QAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDGFGFLRSPDTSFTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ KVN P+ K ++
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVNDGPPEQNKHKVM 132
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR+V+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+ ALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|160872678|ref|ZP_02062810.1| transcription termination factor Rho [Rickettsiella grylli]
gi|159121477|gb|EDP46815.1| transcription termination factor Rho [Rickettsiella grylli]
Length = 418
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 260/361 (72%), Positives = 311/361 (86%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+LPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD V G+IR
Sbjct: 44 KRGEDIYGDGVLEILPDGFGFLRSAEASYLAGPDDIYVSPSQIRRFNLHTGDTVSGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK ERYFALLK+ ++N + E +KNR LF+NLTPL P + + LER S E+IT RIID
Sbjct: 104 PKESERYFALLKVSEINFDTSENAKNRVLFENLTPLFPDERVQLERGNGSTEDITARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP GKGQRGL+V+ PK+GK++++Q+IA +I+ N E +IV+LIDERPEEVT+M+RSV
Sbjct: 164 LVAPTGKGQRGLIVSPPKAGKTMMMQNIAQSISHNCPECYLIVLLIDERPEEVTDMRRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEVIASTFDEPA RHVQVAE+V+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVIASTFDEPATRHVQVAEIVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGS+MDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSKMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+RR+AEKR+YPAI+LN+SGTRREELL + D LQK+W+LRK+L S M + F I+
Sbjct: 344 HLDRRIAEKRIYPAIHLNRSGTRREELLAKPDVLQKMWILRKILQS--MDEVSAMEFLIE 401
Query: 363 R 363
R
Sbjct: 402 R 402
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q+IA +I+ N E +IV+LIDERPEEVT+M+RSVRGEVIASTFDEPA
Sbjct: 177 VSPPKAGKTMMMQNIAQSISHNCPECYLIVLLIDERPEEVTDMRRSVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEIVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L+++ + RL K++++F+I K K GE I+GDG LE+LPDGFGFLRS ++Y+A DDI
Sbjct: 20 ELKIDGLGRLHKKDMIFSILKALAKRGEDIYGDGVLEILPDGFGFLRSAEASYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNLHTG G+IR PK ERYFALLK+ ++N + ++ K+ +L
Sbjct: 80 YVSPSQIRRFNLHTGDTVSGKIRPPKESERYFALLKVSEINFDTSENAKNRVL 132
>gi|237809400|ref|YP_002893840.1| transcription termination factor Rho [Tolumonas auensis DSM 9187]
gi|237501661|gb|ACQ94254.1| transcription termination factor Rho [Tolumonas auensis DSM 9187]
Length = 421
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/347 (73%), Positives = 305/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQ+RRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQVRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ VN ++PE ++N+ LF+NLTPLHP K L LER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVDTVNYDRPENARNKILFENLTPLHPTKRLRLERGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+I+LQ+IA +IT+NH + +IV+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGKGQRGLIVAPPKAGKTILLQNIAQSITSNHPDCELIVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVVASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRVYPAI++ +SGTRREELL D+LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVYPAIDITRSGTRREELLTAPDELQKMWILRKIVHPM 390
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 177/302 (58%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ RL K++++FAI K K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTAVSELVHLGESMGLE--NLARLHKKDIIFAILKAHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--- 488
FLRS S+Y+A DDIY+SPSQ+RRFNL TG G+IR PK GERYFALLK+ VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQVRRFNLRTGDTISGKIRPPKEGERYFALLKVDTVNYDR 123
Query: 489 ----------------------------------------VASP-------------KSG 495
+ASP K+G
Sbjct: 124 PENARNKILFENLTPLHPTKRLRLERGNGSTEDITARILDLASPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+I+LQ+IA +IT+NH + +IV+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 184 KTILLQNIAQSITSNHPDCELIVLLIDERPEEVTEMQRMVKGEVVASTFDEPATRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|406943273|gb|EKD75315.1| hypothetical protein ACD_44C00176G0011 [uncultured bacterium]
Length = 418
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 258/359 (71%), Positives = 306/359 (85%), Gaps = 2/359 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNLHTGD V G+IR PK
Sbjct: 46 GEDIFGHGVLEILDDGFGFLRSSEESYLAGPDDIYVSPSQIRRFNLHTGDTVTGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE +KN+ LF+NLTPL K L++ER S E+IT R+IDL
Sbjct: 106 EGERYFALLKVDQINFDAPENAKNKVLFENLTPLFASKRLVMERGNGSTEDITARVIDLA 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP G+GQRGL+V+ PK+GK+I+LQHIA +I NH E +IV+LIDERPEEVTEM+RSV+G
Sbjct: 166 APFGRGQRGLIVSPPKAGKTIMLQHIAQSIAQNHPECYLIVLLIDERPEEVTEMERSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIPASGKVL
Sbjct: 226 EVVASTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPASGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKR FGAARNIEEGGSLTIIATAL++TGS+MD+VIYEEFK TGNME+HL
Sbjct: 286 TGGVDANALQRPKRIFGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKSTGNMELHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKR 363
+RR+AEKRVYPAI++N+SGTRREELL + D+LQK+W+LRK+L+S M F I R
Sbjct: 346 DRRIAEKRVYPAIHINRSGTRREELLTKPDELQKMWILRKILHS--MDELAAMEFLIDR 402
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+I+LQHIA +I NH E +IV+LIDERPEEVTEM+RSV+GEV+ASTFDEPA
Sbjct: 177 VSPPKAGKTIMLQHIAQSIAQNHPECYLIVLLIDERPEEVTEMERSVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIPASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKR FGAAR
Sbjct: 297 PKRIFGAAR 305
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ RL K++++FAI K + GE IFG G LE+L DGFGFLRS +Y+A DDI
Sbjct: 20 EMGLENLSRLPKKDIIFAILKAHARRGEDIFGHGVLEILDDGFGFLRSSEESYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNLHTG G+IR PK GERYFALLK+ ++N +P++ K+ +L
Sbjct: 80 YVSPSQIRRFNLHTGDTVTGKIRPPKEGERYFALLKVDQINFDAPENAKNKVL 132
>gi|374333969|ref|YP_005090656.1| transcription termination factor Rho [Oceanimonas sp. GK1]
gi|372983656|gb|AEX99905.1| transcription termination factor Rho [Oceanimonas sp. GK1]
Length = 421
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/347 (72%), Positives = 305/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLKI +VN ++PE S+N+ LF+NLTPLH + + +ER S E+IT R++D
Sbjct: 104 PKEGERYFALLKISEVNYDRPESSRNKILFENLTPLHANERMKMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +IT NH E ++IV+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNHPECVLIVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 KGEVIASTFDEPAARHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRVYPAI++ +SGTRREELL D+LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVYPAIDITRSGTRREELLTTPDELQKMWILRKIVHPM 390
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 170/286 (59%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL-------------------------- 481
Y+SPSQIRRFNL TG G+IR PK GERYFAL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKISEVNYDRPESSRNKILFENLTPL 139
Query: 482 -----LKIKKVN-------------------------VASPKSGKSIILQHIAHAITTNH 511
+K+++ N VA PK+GK+++LQ+IA +IT NH
Sbjct: 140 HANERMKMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E ++IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 200 PECVLIVLLIDERPEEVTEMQRMVKGEVIASTFDEPAARHVQVADMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|3421328|emb|CAA11667.1| rho [Neisseria pharyngis]
Length = 342
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 246/340 (72%), Positives = 303/340 (89%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +
Sbjct: 3 KMKQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSV 62
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
RVPK+ ERYFAL+++ +NG+ PE+ K++ LF+NLTPL P K LER+I+++EN+TGR
Sbjct: 63 RVPKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTGRA 122
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL++PIG+GQR LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM R
Sbjct: 123 IDLVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSR 182
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P S
Sbjct: 183 SVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTS 242
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNM
Sbjct: 243 GKILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNM 302
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
E+HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 303 ELHLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 152/266 (57%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++K K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQKMKQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHAIT N+ + +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|3421204|emb|CAA11652.1| rho [Neisseria elongata]
gi|3421208|emb|CAA11653.1| rho [Neisseria elongata]
gi|3421212|emb|CAA11654.1| rho [Neisseria elongata]
gi|3421216|emb|CAA11655.1| rho [Neisseria elongata]
gi|3421220|emb|CAA11656.1| rho [Neisseria elongata subsp. elongata]
gi|3421222|emb|CAA11657.1| rho [Neisseria elongata]
Length = 342
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 247/336 (73%), Positives = 302/336 (89%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RVPK
Sbjct: 7 GEDFNCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPNQIRRFNLHTGDTIEGTVRVPK 66
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
N ERYFAL+++ +NG+ PE+ K++ LF+NLTPL P K LER+I+++EN+T R IDL+
Sbjct: 67 NDERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTSRAIDLV 126
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIG+GQR LLVA PKSGK+++LQ+IAHAIT N+ +A +IV+LIDERPEEVTEM RSVRG
Sbjct: 127 SPIGRGQRALLVAPPKSGKTVMLQNIAHAITANYPDAELIVLLIDERPEEVTEMSRSVRG 186
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK+L
Sbjct: 187 EVVSSTFDEPATRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGKIL 246
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL
Sbjct: 247 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHL 306
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 307 DRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQ+IAHAIT N+ +A +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 138 VAPPKSGKTVMLQNIAHAITANYPDAELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPA 197
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGK+LTGGVD+NAL R
Sbjct: 198 TRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHR 257
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 258 PKRFFGAAR 266
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 64/87 (73%)
Query: 414 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPK 473
GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G +RVPK
Sbjct: 7 GEDFNCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPNQIRRFNLHTGDTIEGTVRVPK 66
Query: 474 NGERYFALLKIKKVNVASPKSGKSIIL 500
N ERYFAL+++ +N P+ K IL
Sbjct: 67 NDERYFALVRLDSINGDHPEVCKHKIL 93
>gi|333374633|ref|ZP_08466473.1| transcription termination factor Rho [Kingella kingae ATCC 23330]
gi|332975271|gb|EGK12171.1| transcription termination factor Rho [Kingella kingae ATCC 23330]
Length = 454
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/348 (73%), Positives = 303/348 (87%), Gaps = 1/348 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K G+ G+LE LPDG+GFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KDGQEFICSGTLETLPDGYGFLRSAATSYLACPDDIYVSPNQIRRFNLHTGDTIEGTVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLER-NIESKENITGRII 121
PKN E+YFAL+++ VN PE S+++ LF+NLTPL P K L LER N S ENITGRII
Sbjct: 104 PKNDEKYFALVRVDSVNSNNPESSRHKILFENLTPLFPTKQLKLERENDLSAENITGRII 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DLI+PIG GQR LLVA PKSGK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RS
Sbjct: 164 DLISPIGLGQRALLVAPPKSGKTVMLQNIAHAITANNPDVELIVLLIDERPEEVTEMTRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SG
Sbjct: 224 VRGEVVASTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN EEGGSLTIIATAL++TGSRMDDVI+EEFKGTGNME
Sbjct: 284 KVLTGGVDANALHRPKRFFGAARNTEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++LERRLAEKRV+PAIN+NKSGTRREELL+ D+LQ++WVLR++L+ +
Sbjct: 344 LNLERRLAEKRVFPAININKSGTRREELLVPSDQLQRMWVLRRVLHPM 391
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/295 (45%), Positives = 172/295 (58%), Gaps = 86/295 (29%)
Query: 380 VLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSN 439
+LA+ + + +E + RLRKQ+L+F I ++ K G+ G+LE LPDG+GFLRS ++
Sbjct: 14 LLAQAEQMGIE--NANRLRKQDLVFTIVRELMKDGQEFICSGTLETLPDGYGFLRSAATS 71
Query: 440 YMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL------------------ 481
Y+A DDIY+SP+QIRRFNLHTG +G +RVPKN E+YFAL
Sbjct: 72 YLACPDDIYVSPNQIRRFNLHTGDTIEGTVRVPKNDEKYFALVRVDSVNSNNPESSRHKI 131
Query: 482 -------------LKIKKVN--------------------------VASPKSGKSIILQH 502
LK+++ N VA PKSGK+++LQ+
Sbjct: 132 LFENLTPLFPTKQLKLERENDLSAENITGRIIDLISPIGLGQRALLVAPPKSGKTVMLQN 191
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 192 IAHAITANNPDVELIVLLIDERPEEVTEMTRSVRGEVVASTFDEPAQRHVQVAEMVIEKA 251
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 252 KRMVEHKKDVVILLDSITRLARAYNTVVPTSGKVLTGGVDANALHRPKRFFGAAR 306
>gi|395003439|ref|ZP_10387580.1| transcription termination factor Rho [Acidovorax sp. CF316]
gi|394318621|gb|EJE55034.1| transcription termination factor Rho [Acidovorax sp. CF316]
Length = 420
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 309/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ KVN PE +K++ +F+NLTPL PK+ + LER+++S+ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDKVNDGPPEQNKHKVMFENLTPLFPKEQMRLERDVKSEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+ ALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDAAALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLNRRLYEKRVFPAIELNKSGTRREELLLVPEILQKTRILRQFMYNM 390
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 91/116 (78%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ K GE++F DG LE+LPDGFGFLRS +++ AS+
Sbjct: 17 QAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDGFGFLRSPDTSFTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ KVN P+ K ++
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVNDGPPEQNKHKVM 132
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR+V+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+ ALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|121609560|ref|YP_997367.1| transcription termination factor Rho [Verminephrobacter eiseniae
EF01-2]
gi|121554200|gb|ABM58349.1| transcription termination factor Rho [Verminephrobacter eiseniae
EF01-2]
Length = 420
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 307/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKTGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ VNG PE +K++ +F+NLTPL PK+ + LER I+ +ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDAVNGGPPEQNKHKVMFENLTPLFPKEQMRLEREIKGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAP+G+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPLGRGQRALIVAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+ ALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDAAALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +YS+
Sbjct: 342 EIHLNRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYSM 390
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 22/189 (11%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q DLE+ + R+RKQELMFAI KK+ K GE++F DG LE+LPDGFGFLRS +++ AS+
Sbjct: 17 QAEDLEIENTGRMRKQELMFAIIKKRAKTGEQVFADGVLEILPDGFGFLRSPDTSFTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIA 504
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN P+ K
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDAVNGGPPEQNK-------- 128
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVI- 563
+M L P+E ++R ++GE + ++ L R +I
Sbjct: 129 --------HKVMFENLTPLFPKEQMRLEREIKGE---ENITGRIIDIIAPLGRGQRALIV 177
Query: 564 --PASGKVL 570
P SGK +
Sbjct: 178 APPKSGKTV 186
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR+V+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+ ALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|260220994|emb|CBA29115.1| Transcription termination factor rho [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 421
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/350 (71%), Positives = 311/350 (88%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ + GE+I DG LE+LPDGFGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RARAGEQIIADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERN-IESKENITGR 119
R PK+GERYFAL K+ KVNG PE +K++ +F+NLTPL PK + LE++ +++ ENITGR
Sbjct: 102 RTPKDGERYFALNKLDKVNGGPPEGNKHKVMFENLTPLFPKVQMRLEQDGLKTDENITGR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
+ID+IAPIGKGQR LLVA PKSGK++++QHIAHAI+ N+ ++ M+V+L+DERPEEVTEMQ
Sbjct: 162 VIDIIAPIGKGQRALLVAPPKSGKTVMMQHIAHAISANYPDSHMMVLLVDERPEEVTEMQ 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
R+V+GEVIASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+
Sbjct: 222 RTVKGEVIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPS 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRF GAARN+EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 SGKVLTGGVDANALQRPKRFLGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EVHL+RRL EKR++P+I LN+SGTRREELL+Q + LQK +LR+ LY++
Sbjct: 342 SEVHLDRRLYEKRIFPSIQLNRSGTRREELLLQPEILQKTRILRQFLYNM 391
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 90/116 (77%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ + GE+I DG LE+LPDGFGFLRS ++Y AS+
Sbjct: 17 QAEELEIENTGRMRKQELMFAIIKKRARAGEQIIADGVLEILPDGFGFLRSPDTSYTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ KVN P+ K ++
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVNGGPPEGNKHKVM 132
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAI+ N+ ++ M+V+L+DERPEEVTEMQR+V+GEVIASTFDEPA
Sbjct: 178 VAPPKSGKTVMMQHIAHAISANYPDSHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 238 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRF GAAR
Sbjct: 298 PKRFLGAAR 306
>gi|261856915|ref|YP_003264198.1| transcription termination factor Rho [Halothiobacillus neapolitanus
c2]
gi|261837384|gb|ACX97151.1| transcription termination factor Rho [Halothiobacillus neapolitanus
c2]
Length = 419
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 304/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+LPDGFGFLR S+Y+A D+Y+SPSQIRRFNL TGD + G +R
Sbjct: 44 KSGESIFGDGVLEILPDGFGFLRGADSSYLAGPADVYVSPSQIRRFNLQTGDTIAGTVRS 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLKI +N E P ++K + LF+NLTPLH + + +ER S E++T RIID
Sbjct: 104 PKDGERYFALLKIDTINFEAPNMAKGKVLFENLTPLHANQRMRMERGNGSTEDLTARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
+++P+GKGQRGL+VA PK+GK+++LQ+IA +I+ NH E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 IVSPVGKGQRGLIVAPPKAGKTMLLQNIAQSISANHPECDLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DVIILLDSITRLARAYNTV+P+SGK
Sbjct: 224 RGEVVASTFDEPATRHVQVAEMVIEKAKRLVEHKRDVIILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIEEGGSLTI+ATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEEGGSLTILATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL+RR+AEKRVYPAIN+N+SGTRREELL ++LQK+W+LRK L+ ++
Sbjct: 344 HLDRRIAEKRVYPAININRSGTRREELLTDAEELQKMWILRKFLHPMS 391
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 154/295 (52%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF------ 430
L +AE+ I+ ++ R RK +++FA+ K K GE IFGDG LE+LPD GF
Sbjct: 15 LAMAESMGIE----NIARTRKHDVIFALLKAHAKSGESIFGDGVLEILPDGFGFLRGADS 70
Query: 431 GFLRSQGSNYMASS----------DDI------------YLSPSQIRRFNLHTGILWKGE 468
+L Y++ S D I Y + +I N + KG+
Sbjct: 71 SYLAGPADVYVSPSQIRRFNLQTGDTIAGTVRSPKDGERYFALLKIDTINFEAPNMAKGK 130
Query: 469 I--------------RVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQH 502
+ R+ + NG +I + + VA PK+GK+++LQ+
Sbjct: 131 VLFENLTPLHANQRMRMERGNGSTEDLTARIIDIVSPVGKGQRGLIVAPPKAGKTMLLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IA +I+ NH E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEPA
Sbjct: 191 IAQSISANHPECDLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPATRHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRLVEHKRDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|241767093|ref|ZP_04764866.1| transcription termination factor Rho [Acidovorax delafieldii 2AN]
gi|241362340|gb|EER58330.1| transcription termination factor Rho [Acidovorax delafieldii 2AN]
Length = 420
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 245/349 (70%), Positives = 309/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ KVN PE +K++ +F+NLTPL PK+ + LER+++S+ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDKVNDGPPEQNKHKVMFENLTPLFPKEQMRLERDVKSEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+G++IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGDIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+ ALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDAAALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLNRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYNM 390
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 91/116 (78%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ K GE++F DG LE+LPDGFGFLRS +++ AS+
Sbjct: 17 QAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDGFGFLRSPDTSFTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ KVN P+ K ++
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVNDGPPEQNKHKVM 132
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR+V+G++IASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGDIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+ ALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|407938564|ref|YP_006854205.1| transcription termination factor Rho [Acidovorax sp. KKS102]
gi|407896358|gb|AFU45567.1| transcription termination factor Rho [Acidovorax sp. KKS102]
Length = 420
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 308/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ KVNG PE +K++ +F+NLTPL PK+ + LER+I+ ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDKVNGGPPEQNKHKVMFENLTPLFPKEQMRLERDIKGDENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+G++IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGDIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+ ALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDAAALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLNRRLYEKRVFPAIELNKSGTRREELLLPPEILQKTRILRQFMYNM 390
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 91/116 (78%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ K GE++F DG LE+LPDGFGFLRS +++ AS+
Sbjct: 17 QAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDGFGFLRSPDTSFTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ KVN P+ K ++
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVNGGPPEQNKHKVM 132
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR+V+G++IASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGDIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+ ALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|326317372|ref|YP_004235044.1| transcription termination factor Rho [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323374208|gb|ADX46477.1| transcription termination factor Rho [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 420
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 247/349 (70%), Positives = 307/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS ++Y AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ VNG PE +K++ +F+NLTPL PK+ + LER+++ ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDAVNGGPPEQNKHKVMFENLTPLFPKEQMKLERDMKGDENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTMMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+ ALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDAAALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ LY++
Sbjct: 342 EIHLNRRLYEKRVFPAIELNKSGTRREELLLPPEILQKTRILRQFLYNM 390
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 114/189 (60%), Gaps = 22/189 (11%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ K GE++F DG LE+LPDGFGFLRS ++Y AS+
Sbjct: 17 QAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDGFGFLRSPDTSYTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIA 504
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN P+ K
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDAVNGGPPEQNK-------- 128
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMCKLARAYNTVI- 563
+M L P+E +++R ++G+ + ++ + R +I
Sbjct: 129 --------HKVMFENLTPLFPKEQMKLERDMKGD---ENITGRIIDIIAPIGRGQRALIV 177
Query: 564 --PASGKVL 570
P SGK +
Sbjct: 178 APPKSGKTM 186
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR+V+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTMMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+ ALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|325266650|ref|ZP_08133327.1| transcription termination factor Rho [Kingella denitrificans ATCC
33394]
gi|324982093|gb|EGC17728.1| transcription termination factor Rho [Kingella denitrificans ATCC
33394]
Length = 451
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/345 (72%), Positives = 302/345 (87%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G+ G+LE LPDG+GFLRS ++Y+A DDIY+SP QIRRFNLHTGD +EG +RVPK
Sbjct: 46 GQEFICSGTLETLPDGYGFLRSAATSYLACPDDIYVSPHQIRRFNLHTGDTIEGTVRVPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
N E+YFAL+++ VNG+ PE +++ LF+NLTPL P+K L LE++ S ENITGRIIDLI
Sbjct: 106 NDEKYFALVRLDSVNGDHPEKCRHKILFENLTPLFPEKQLKLEQDNLSAENITGRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIG GQR LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRG
Sbjct: 166 SPIGLGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMTRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK+L
Sbjct: 226 EVVASTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKIL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NAL RPKRFFGAARN EEGGSLTIIATAL++TGSRMDDVI+EEFKGTGNME++L
Sbjct: 286 TGGVDANALHRPKRFFGAARNTEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELNL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
ERRLAEKRV+PAIN+NKSGTRREELL+ D+LQK+W LR++++ +
Sbjct: 346 ERRLAEKRVFPAININKSGTRREELLVPADQLQKMWALRRVIHPM 390
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/294 (45%), Positives = 171/294 (58%), Gaps = 85/294 (28%)
Query: 380 VLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSN 439
+LA+ + + +E + RLRKQ+L+F I +K + G+ G+LE LPDG+GFLRS ++
Sbjct: 14 LLAQAEQMGIE--NANRLRKQDLVFTIVRKLMENGQEFICSGTLETLPDGYGFLRSAATS 71
Query: 440 YMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL------------------ 481
Y+A DDIY+SP QIRRFNLHTG +G +RVPKN E+YFAL
Sbjct: 72 YLACPDDIYVSPHQIRRFNLHTGDTIEGTVRVPKNDEKYFALVRLDSVNGDHPEKCRHKI 131
Query: 482 -------------LKIKKVN-------------------------VASPKSGKSIILQHI 503
LK+++ N VA PK+GK+++LQ+I
Sbjct: 132 LFENLTPLFPEKQLKLEQDNLSAENITGRIIDLISPIGLGQRALLVAPPKTGKTVMLQNI 191
Query: 504 AHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------- 548
AHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 192 AHAITANYPDVELIVLLIDERPEEVTEMTRSVRGEVVASTFDEPAQRHVQVAEMVIEKAK 251
Query: 549 ------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 252 RMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRFFGAAR 305
>gi|3421302|emb|CAA11661.1| rho [Neisseria meningitidis]
Length = 342
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/338 (73%), Positives = 303/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PKSGK+++LQ+IAHA+T+N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EE GSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEDGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 152/266 (57%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHA+T+N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|3421258|emb|CAA11648.1| rho [Neisseria flava]
gi|3421312|emb|CAA11668.1| rho [Neisseria mucosa]
gi|3421324|emb|CAA11647.1| rho [Neisseria sicca]
Length = 342
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/338 (72%), Positives = 302/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ K++ LF+NLTPL P K LER+I+++EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIG+GQR LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSV
Sbjct: 125 LVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 151/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKQGESFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDHPEVCKHKILFENLTPLFPTKQFKLERDIKAEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+IAHAIT N+ + +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLVSPIGRGQRALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 TSGKILTGGVDANALHRPKRFFGAAR 266
>gi|262167972|ref|ZP_06035671.1| transcription termination factor Rho [Vibrio cholerae RC27]
gi|262172591|ref|ZP_06040269.1| transcription termination factor Rho [Vibrio mimicus MB-451]
gi|384423624|ref|YP_005632982.1| transcription termination factor Rho [Vibrio cholerae LMA3984-4]
gi|417811380|ref|ZP_12458045.1| transcription termination factor Rho [Vibrio cholerae HC-49A2]
gi|418331010|ref|ZP_12941968.1| transcription termination factor Rho [Vibrio cholerae HC-06A1]
gi|418335972|ref|ZP_12944875.1| transcription termination factor Rho [Vibrio cholerae HC-23A1]
gi|418347720|ref|ZP_12952458.1| transcription termination factor Rho [Vibrio cholerae HC-43A1]
gi|421315457|ref|ZP_15766031.1| transcription termination factor Rho [Vibrio cholerae CP1032(5)]
gi|421330532|ref|ZP_15781017.1| transcription termination factor Rho [Vibrio cholerae CP1046(19)]
gi|421345438|ref|ZP_15795826.1| transcription termination factor Rho [Vibrio cholerae HC-46A1]
gi|421350169|ref|ZP_15800537.1| transcription termination factor Rho [Vibrio cholerae HE-25]
gi|422305718|ref|ZP_16392909.1| transcription termination factor Rho [Vibrio cholerae CP1035(8)]
gi|422890344|ref|ZP_16932779.1| transcription termination factor Rho [Vibrio cholerae HC-40A1]
gi|422901138|ref|ZP_16936529.1| transcription termination factor Rho [Vibrio cholerae HC-48A1]
gi|422916040|ref|ZP_16950391.1| transcription termination factor Rho [Vibrio cholerae HC-02A1]
gi|422921552|ref|ZP_16954774.1| transcription termination factor Rho [Vibrio cholerae BJG-01]
gi|423143575|ref|ZP_17131201.1| transcription termination factor Rho [Vibrio cholerae HC-19A1]
gi|423163671|ref|ZP_17150475.1| transcription termination factor Rho [Vibrio cholerae HC-48B2]
gi|423729682|ref|ZP_17703013.1| transcription termination factor Rho [Vibrio cholerae HC-17A1]
gi|423746659|ref|ZP_17711207.1| transcription termination factor Rho [Vibrio cholerae HC-50A2]
gi|423878644|ref|ZP_17722389.1| transcription termination factor Rho [Vibrio cholerae HC-60A1]
gi|423924824|ref|ZP_17729837.1| transcription termination factor Rho [Vibrio cholerae HC-77A1]
gi|423974027|ref|ZP_17736807.1| transcription termination factor Rho [Vibrio cholerae HE-46]
gi|424005010|ref|ZP_17748007.1| transcription termination factor Rho [Vibrio cholerae HC-37A1]
gi|424018272|ref|ZP_17758084.1| transcription termination factor Rho [Vibrio cholerae HC-59B1]
gi|424585205|ref|ZP_18024810.1| transcription termination factor Rho [Vibrio cholerae CP1030(3)]
gi|424589581|ref|ZP_18029038.1| transcription termination factor Rho [Vibrio cholerae CP1037(10)]
gi|424593827|ref|ZP_18033178.1| transcription termination factor Rho [Vibrio cholerae CP1040(13)]
gi|424597758|ref|ZP_18036969.1| transcription termination factor Rho [Vibrio Cholerae CP1044(17)]
gi|424605447|ref|ZP_18044418.1| transcription termination factor Rho [Vibrio cholerae CP1050(23)]
gi|424615957|ref|ZP_18054659.1| transcription termination factor Rho [Vibrio cholerae HC-42A1]
gi|424620719|ref|ZP_18059253.1| transcription termination factor Rho [Vibrio cholerae HC-47A1]
gi|424632177|ref|ZP_18070304.1| transcription termination factor Rho [Vibrio cholerae HC-52A1]
gi|424639059|ref|ZP_18076964.1| transcription termination factor Rho [Vibrio cholerae HC-56A1]
gi|424647341|ref|ZP_18085027.1| transcription termination factor Rho [Vibrio cholerae HC-57A1]
gi|424651459|ref|ZP_18088992.1| transcription termination factor Rho [Vibrio cholerae HC-57A2]
gi|440712244|ref|ZP_20892869.1| transcription termination factor Rho [Vibrio cholerae 4260B]
gi|443517746|ref|ZP_21084178.1| transcription termination factor Rho [Vibrio cholerae HC-71A1]
gi|443540001|ref|ZP_21105852.1| transcription termination factor Rho [Vibrio cholerae HC-81A1]
gi|261893667|gb|EEY39653.1| transcription termination factor Rho [Vibrio mimicus MB-451]
gi|262023505|gb|EEY42207.1| transcription termination factor Rho [Vibrio cholerae RC27]
gi|327483177|gb|AEA77584.1| Transcription termination factor Rho [Vibrio cholerae LMA3984-4]
gi|340045930|gb|EGR06868.1| transcription termination factor Rho [Vibrio cholerae HC-49A2]
gi|341627919|gb|EGS53208.1| transcription termination factor Rho [Vibrio cholerae HC-48A1]
gi|341628242|gb|EGS53507.1| transcription termination factor Rho [Vibrio cholerae HC-40A1]
gi|341641524|gb|EGS66063.1| transcription termination factor Rho [Vibrio cholerae HC-02A1]
gi|341648663|gb|EGS72705.1| transcription termination factor Rho [Vibrio cholerae BJG-01]
gi|356422435|gb|EHH75911.1| transcription termination factor Rho [Vibrio cholerae HC-06A1]
gi|356427183|gb|EHH80436.1| transcription termination factor Rho [Vibrio cholerae HC-19A1]
gi|356434354|gb|EHH87535.1| transcription termination factor Rho [Vibrio cholerae HC-23A1]
gi|356448441|gb|EHI01213.1| transcription termination factor Rho [Vibrio cholerae HC-43A1]
gi|356456648|gb|EHI09237.1| transcription termination factor Rho [Vibrio cholerae HC-48B2]
gi|395922946|gb|EJH33759.1| transcription termination factor Rho [Vibrio cholerae CP1032(5)]
gi|395936219|gb|EJH46948.1| transcription termination factor Rho [Vibrio cholerae CP1046(19)]
gi|395948808|gb|EJH59446.1| transcription termination factor Rho [Vibrio cholerae HC-46A1]
gi|395955276|gb|EJH65879.1| transcription termination factor Rho [Vibrio cholerae HE-25]
gi|395964640|gb|EJH74844.1| transcription termination factor Rho [Vibrio cholerae HC-57A2]
gi|395967615|gb|EJH77680.1| transcription termination factor Rho [Vibrio cholerae HC-42A1]
gi|395976106|gb|EJH85568.1| transcription termination factor Rho [Vibrio cholerae HC-47A1]
gi|395978811|gb|EJH88177.1| transcription termination factor Rho [Vibrio cholerae CP1030(3)]
gi|408022234|gb|EKG59452.1| transcription termination factor Rho [Vibrio cholerae HC-52A1]
gi|408028009|gb|EKG64937.1| transcription termination factor Rho [Vibrio cholerae HC-56A1]
gi|408037408|gb|EKG73805.1| transcription termination factor Rho [Vibrio cholerae CP1037(10)]
gi|408037838|gb|EKG74211.1| transcription termination factor Rho [Vibrio cholerae HC-57A1]
gi|408038026|gb|EKG74385.1| transcription termination factor Rho [Vibrio cholerae CP1040(13)]
gi|408045537|gb|EKG81355.1| transcription termination factor Rho [Vibrio Cholerae CP1044(17)]
gi|408047262|gb|EKG82907.1| transcription termination factor Rho [Vibrio cholerae CP1050(23)]
gi|408628164|gb|EKL00931.1| transcription termination factor Rho [Vibrio cholerae HC-17A1]
gi|408628205|gb|EKL00970.1| transcription termination factor Rho [Vibrio cholerae CP1035(8)]
gi|408644018|gb|EKL15730.1| transcription termination factor Rho [Vibrio cholerae HC-50A2]
gi|408644648|gb|EKL16326.1| transcription termination factor Rho [Vibrio cholerae HC-60A1]
gi|408659965|gb|EKL30998.1| transcription termination factor Rho [Vibrio cholerae HC-77A1]
gi|408666386|gb|EKL37175.1| transcription termination factor Rho [Vibrio cholerae HE-46]
gi|408850027|gb|EKL90016.1| transcription termination factor Rho [Vibrio cholerae HC-37A1]
gi|408871393|gb|EKM10636.1| transcription termination factor Rho [Vibrio cholerae HC-59B1]
gi|439972254|gb|ELP48551.1| transcription termination factor Rho [Vibrio cholerae 4260B]
gi|443448621|gb|ELT05241.1| transcription termination factor Rho [Vibrio cholerae HC-71A1]
gi|443464288|gb|ELT38951.1| transcription termination factor Rho [Vibrio cholerae HC-81A1]
Length = 409
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/352 (70%), Positives = 307/352 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 33 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 92
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 93 PPKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 152
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR
Sbjct: 153 DLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRL 212
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASG
Sbjct: 213 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASG 272
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 273 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 332
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 333 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETD 384
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 167 VAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 226
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 227 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 286
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 287 PKRFFGAAR 295
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 82/112 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 11 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 70
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN P + ++ IL
Sbjct: 71 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDRPDNARNKIL 122
>gi|332289422|ref|YP_004420274.1| transcription termination factor Rho [Gallibacterium anatis UMN179]
gi|330432318|gb|AEC17377.1| transcription termination factor Rho [Gallibacterium anatis UMN179]
Length = 420
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/348 (72%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFGDG LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 SKSGEDIFGDGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDMIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE+S+N+ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVNQVNDDRPEISRNKILFENLTPLHANYRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQR L+VA PK+GK++ LQ+IA +IT N+ E I++V+LIDERPEEVTEMQR
Sbjct: 164 DLAAPIGKGQRALIVAPPKAGKTMFLQNIAQSITYNYPECILMVLLIDERPEEVTEMQRL 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVVASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 284 KVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 344 LHLSRKIAEKRVFPAIDFNSSGTRKEELLTTPDELQKMWILRKIVHPM 391
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK++ LQ+IA +IT N+ E I++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 178 VAPPKAGKTMFLQNIAQSITYNYPECILMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASGKVL+GGVD+NAL R
Sbjct: 238 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 87/110 (79%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K+ +K GE IFGDG LE+LPDGFGFLRS S+Y+A DDIY+S
Sbjct: 24 LENLARLRKQDIIFAILKQHSKSGEDIFGDGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG + +G+IR PK GERYFALLK+ +VN P+ ++ IL
Sbjct: 84 PSQIRRFNLRTGDMIEGKIRPPKEGERYFALLKVNQVNDDRPEISRNKIL 133
>gi|77166050|ref|YP_344575.1| transcription termination factor Rho [Nitrosococcus oceani ATCC
19707]
gi|254436344|ref|ZP_05049850.1| transcription termination factor Rho [Nitrosococcus oceani AFC27]
gi|76884364|gb|ABA59045.1| transcription termination factor Rho [Nitrosococcus oceani ATCC
19707]
gi|207088034|gb|EDZ65307.1| transcription termination factor Rho [Nitrosococcus oceani AFC27]
Length = 418
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/394 (67%), Positives = 315/394 (79%), Gaps = 19/394 (4%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+G+G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD VEG+IR
Sbjct: 44 KNGEDIYGNGVLELLQDGFGFLRSASASYLAGPDDIYVSPSQIRRFGLRTGDTVEGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N E PE S+N+ LF+NLTPL + L+LER S E++T R+ID
Sbjct: 104 PKEGERYFALLKVSSINFEPPEQSRNKVLFENLTPLFANERLVLERGNGSTEDLTPRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+ P+GKGQRGL+V+SPKSGK+++LQ+IA +I NH E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LVVPVGKGQRGLIVSSPKSGKTVMLQNIAQSIAANHPECYLIVLLIDERPEEVTEMARSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HLER+LAEKRVYPAIN+++SGTRREELL + LQK W+L KLL M F +
Sbjct: 344 HLERKLAEKRVYPAINISRSGTRREELLTNPENLQKTWILHKLLAP--MDEAEAMEFLLS 401
Query: 363 RTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKR 396
R L ET+T D NS+KR
Sbjct: 402 R-----------------LKETKTNDEFFNSMKR 418
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+SPKSGK+++LQ+IA +I NH E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VSSPKSGKTVMLQNIAQSIAANHPECYLIVLLIDERPEEVTEMARSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 88/129 (68%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +L Q++ LE + RLR+Q+L+FA+ K K GE I+G+G LE+L DGFG
Sbjct: 6 LKTKSASELLDIAQSMGLE--GISRLRRQDLIFALLKAHAKNGEDIYGNGVLELLQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +N
Sbjct: 64 FLRSASASYLAGPDDIYVSPSQIRRFGLRTGDTVEGKIRPPKEGERYFALLKVSSINFEP 123
Query: 492 PKSGKSIIL 500
P+ ++ +L
Sbjct: 124 PEQSRNKVL 132
>gi|351728229|ref|ZP_08945920.1| transcription termination factor Rho [Acidovorax radicis N35]
Length = 420
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 308/349 (88%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE+I DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKTGEQIIADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ VNG PE +K++ +F+NLTPL PK+ + LER+++S+ENITGRI
Sbjct: 102 RTPKDGERYFALNKLDSVNGGPPEQNKHKVMFENLTPLFPKEQMRLERDVKSEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIG+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGRGQRALIVAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+ ALQRPKRFFGAAR +EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDAAALQRPKRFFGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLNRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYNM 390
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 89/116 (76%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ K GE+I DG LE+LPDGFGFLRS +++ AS+
Sbjct: 17 QAEELEIENTGRMRKQELMFAIIKKRAKTGEQIIADGVLEILPDGFGFLRSPDTSFTAST 76
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN P+ K ++
Sbjct: 77 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALNKLDSVNGGPPEQNKHKVM 132
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR+V+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+ ALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|15640335|ref|NP_229962.1| transcription termination factor Rho [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121591054|ref|ZP_01678367.1| transcription termination factor Rho [Vibrio cholerae 2740-80]
gi|147675619|ref|YP_001218577.1| transcription termination factor Rho [Vibrio cholerae O395]
gi|153803141|ref|ZP_01957727.1| transcription termination factor Rho [Vibrio cholerae MZO-3]
gi|153819595|ref|ZP_01972262.1| transcription termination factor Rho [Vibrio cholerae NCTC 8457]
gi|153822834|ref|ZP_01975501.1| transcription termination factor Rho [Vibrio cholerae B33]
gi|153827153|ref|ZP_01979820.1| transcription termination factor Rho [Vibrio cholerae MZO-2]
gi|153831011|ref|ZP_01983678.1| transcription termination factor Rho [Vibrio cholerae 623-39]
gi|227080521|ref|YP_002809072.1| transcription termination factor Rho [Vibrio cholerae M66-2]
gi|227116716|ref|YP_002818612.1| transcription termination factor Rho [Vibrio cholerae O395]
gi|229506896|ref|ZP_04396404.1| transcription termination factor Rho [Vibrio cholerae BX 330286]
gi|229509269|ref|ZP_04398752.1| transcription termination factor Rho [Vibrio cholerae B33]
gi|229512685|ref|ZP_04402153.1| transcription termination factor Rho [Vibrio cholerae TMA 21]
gi|229516213|ref|ZP_04405661.1| transcription termination factor Rho [Vibrio cholerae RC9]
gi|229520974|ref|ZP_04410395.1| transcription termination factor Rho [Vibrio cholerae TM 11079-80]
gi|229527198|ref|ZP_04416591.1| transcription termination factor Rho [Vibrio cholerae 12129(1)]
gi|229606409|ref|YP_002877057.1| transcription termination factor Rho [Vibrio cholerae MJ-1236]
gi|254286222|ref|ZP_04961181.1| transcription termination factor Rho [Vibrio cholerae AM-19226]
gi|254851441|ref|ZP_05240791.1| transcription termination factor Rho [Vibrio cholerae MO10]
gi|255744105|ref|ZP_05418059.1| transcription termination factor Rho [Vibrio cholera CIRS 101]
gi|258620669|ref|ZP_05715706.1| transcription termination factor Rho [Vibrio mimicus VM573]
gi|258623757|ref|ZP_05718715.1| transcription termination factor Rho [Vibrio mimicus VM603]
gi|262161997|ref|ZP_06031014.1| transcription termination factor Rho [Vibrio cholerae INDRE 91/1]
gi|262163843|ref|ZP_06031583.1| transcription termination factor Rho [Vibrio mimicus VM223]
gi|262405030|ref|ZP_06081582.1| transcription termination factor Rho [Vibrio sp. RC586]
gi|297581769|ref|ZP_06943691.1| transcription termination factor Rho [Vibrio cholerae RC385]
gi|298500939|ref|ZP_07010741.1| transcription termination factor Rho [Vibrio cholerae MAK 757]
gi|360036945|ref|YP_004938708.1| transcription termination factor Rho [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740191|ref|YP_005332160.1| transcription termination factor Rho [Vibrio cholerae IEC224]
gi|417815134|ref|ZP_12461775.1| transcription termination factor Rho [Vibrio cholerae HCUF01]
gi|417819197|ref|ZP_12465816.1| transcription termination factor Rho [Vibrio cholerae HE39]
gi|417823436|ref|ZP_12470033.1| transcription termination factor Rho [Vibrio cholerae HE48]
gi|418342549|ref|ZP_12949359.1| transcription termination factor Rho [Vibrio cholerae HC-28A1]
gi|418353154|ref|ZP_12955881.1| transcription termination factor Rho [Vibrio cholerae HC-61A1]
gi|419828006|ref|ZP_14351498.1| transcription termination factor Rho [Vibrio cholerae HC-1A2]
gi|419831667|ref|ZP_14355136.1| transcription termination factor Rho [Vibrio cholerae HC-61A2]
gi|419835254|ref|ZP_14358702.1| transcription termination factor Rho [Vibrio cholerae HC-46B1]
gi|421319094|ref|ZP_15769656.1| transcription termination factor Rho [Vibrio cholerae CP1038(11)]
gi|421323130|ref|ZP_15773663.1| transcription termination factor Rho [Vibrio cholerae CP1041(14)]
gi|421326602|ref|ZP_15777121.1| transcription termination factor Rho [Vibrio cholerae CP1042(15)]
gi|421334129|ref|ZP_15784602.1| transcription termination factor Rho [Vibrio cholerae CP1048(21)]
gi|421338030|ref|ZP_15788472.1| transcription termination factor Rho [Vibrio cholerae HC-20A2]
gi|421341839|ref|ZP_15792248.1| transcription termination factor Rho [Vibrio cholerae HC-43B1]
gi|421353135|ref|ZP_15803473.1| transcription termination factor Rho [Vibrio cholerae HE-45]
gi|422905303|ref|ZP_16940172.1| transcription termination factor Rho [Vibrio cholerae HC-70A1]
gi|422912047|ref|ZP_16946585.1| transcription termination factor Rho [Vibrio cholerae HFU-02]
gi|422924521|ref|ZP_16957574.1| transcription termination factor Rho [Vibrio cholerae HC-38A1]
gi|423148557|ref|ZP_17135927.1| transcription termination factor Rho [Vibrio cholerae HC-21A1]
gi|423152341|ref|ZP_17139563.1| transcription termination factor Rho [Vibrio cholerae HC-22A1]
gi|423155136|ref|ZP_17142279.1| transcription termination factor Rho [Vibrio cholerae HC-32A1]
gi|423158999|ref|ZP_17145977.1| transcription termination factor Rho [Vibrio cholerae HC-33A2]
gi|423733611|ref|ZP_17706836.1| transcription termination factor Rho [Vibrio cholerae HC-41B1]
gi|423812403|ref|ZP_17714995.1| transcription termination factor Rho [Vibrio cholerae HC-55C2]
gi|423846980|ref|ZP_17718781.1| transcription termination factor Rho [Vibrio cholerae HC-59A1]
gi|423890285|ref|ZP_17725221.1| transcription termination factor Rho [Vibrio cholerae HC-62A1]
gi|423944579|ref|ZP_17733260.1| transcription termination factor Rho [Vibrio cholerae HE-40]
gi|423996462|ref|ZP_17739737.1| transcription termination factor Rho [Vibrio cholerae HC-02C1]
gi|424000851|ref|ZP_17743953.1| transcription termination factor Rho [Vibrio cholerae HC-17A2]
gi|424007897|ref|ZP_17750853.1| transcription termination factor Rho [Vibrio cholerae HC-44C1]
gi|424015162|ref|ZP_17755018.1| transcription termination factor Rho [Vibrio cholerae HC-55B2]
gi|424022806|ref|ZP_17762481.1| transcription termination factor Rho [Vibrio cholerae HC-62B1]
gi|424025825|ref|ZP_17765454.1| transcription termination factor Rho [Vibrio cholerae HC-69A1]
gi|424600528|ref|ZP_18039694.1| transcription termination factor Rho [Vibrio cholerae CP1047(20)]
gi|424609161|ref|ZP_18048029.1| transcription termination factor Rho [Vibrio cholerae HC-39A1]
gi|424612079|ref|ZP_18050895.1| transcription termination factor Rho [Vibrio cholerae HC-41A1]
gi|424623652|ref|ZP_18062136.1| transcription termination factor Rho [Vibrio cholerae HC-50A1]
gi|424628224|ref|ZP_18066541.1| transcription termination factor Rho [Vibrio cholerae HC-51A1]
gi|424635266|ref|ZP_18073296.1| transcription termination factor Rho [Vibrio cholerae HC-55A1]
gi|424643537|ref|ZP_18081300.1| transcription termination factor Rho [Vibrio cholerae HC-56A2]
gi|424655404|ref|ZP_18092715.1| transcription termination factor Rho [Vibrio cholerae HC-81A2]
gi|424810148|ref|ZP_18235515.1| transcription termination factor Rho [Vibrio mimicus SX-4]
gi|429886630|ref|ZP_19368176.1| Transcription termination factor Rho [Vibrio cholerae PS15]
gi|443502363|ref|ZP_21069362.1| transcription termination factor Rho [Vibrio cholerae HC-64A1]
gi|443506259|ref|ZP_21073066.1| transcription termination factor Rho [Vibrio cholerae HC-65A1]
gi|443510095|ref|ZP_21076777.1| transcription termination factor Rho [Vibrio cholerae HC-67A1]
gi|443513942|ref|ZP_21080493.1| transcription termination factor Rho [Vibrio cholerae HC-68A1]
gi|443522338|ref|ZP_21088593.1| transcription termination factor Rho [Vibrio cholerae HC-72A2]
gi|443526192|ref|ZP_21092289.1| transcription termination factor Rho [Vibrio cholerae HC-78A1]
gi|443529261|ref|ZP_21095282.1| transcription termination factor Rho [Vibrio cholerae HC-7A1]
gi|443534003|ref|ZP_21099932.1| transcription termination factor Rho [Vibrio cholerae HC-80A1]
gi|449054457|ref|ZP_21733125.1| Transcription termination factor Rho [Vibrio cholerae O1 str. Inaba
G4222]
gi|449054500|ref|ZP_21733168.1| Transcription termination factor Rho [Vibrio cholerae O1 str. Inaba
G4222]
gi|449145344|ref|ZP_21776150.1| transcription termination factor Rho [Vibrio mimicus CAIM 602]
gi|9654720|gb|AAF93481.1| transcription termination factor Rho [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121547087|gb|EAX57222.1| transcription termination factor Rho [Vibrio cholerae 2740-80]
gi|124121332|gb|EAY40075.1| transcription termination factor Rho [Vibrio cholerae MZO-3]
gi|126509851|gb|EAZ72445.1| transcription termination factor Rho [Vibrio cholerae NCTC 8457]
gi|126519652|gb|EAZ76875.1| transcription termination factor Rho [Vibrio cholerae B33]
gi|146317502|gb|ABQ22041.1| transcription termination factor Rho [Vibrio cholerae O395]
gi|148873503|gb|EDL71638.1| transcription termination factor Rho [Vibrio cholerae 623-39]
gi|149738950|gb|EDM53268.1| transcription termination factor Rho [Vibrio cholerae MZO-2]
gi|150423637|gb|EDN15579.1| transcription termination factor Rho [Vibrio cholerae AM-19226]
gi|227008409|gb|ACP04621.1| transcription termination factor Rho [Vibrio cholerae M66-2]
gi|227012166|gb|ACP08376.1| transcription termination factor Rho [Vibrio cholerae O395]
gi|229335206|gb|EEO00690.1| transcription termination factor Rho [Vibrio cholerae 12129(1)]
gi|229341859|gb|EEO06860.1| transcription termination factor Rho [Vibrio cholerae TM 11079-80]
gi|229346639|gb|EEO11609.1| transcription termination factor Rho [Vibrio cholerae RC9]
gi|229350195|gb|EEO15147.1| transcription termination factor Rho [Vibrio cholerae TMA 21]
gi|229353584|gb|EEO18521.1| transcription termination factor Rho [Vibrio cholerae B33]
gi|229356001|gb|EEO20920.1| transcription termination factor Rho [Vibrio cholerae BX 330286]
gi|229369064|gb|ACQ59487.1| transcription termination factor Rho [Vibrio cholerae MJ-1236]
gi|254847146|gb|EET25560.1| transcription termination factor Rho [Vibrio cholerae MO10]
gi|255738370|gb|EET93761.1| transcription termination factor Rho [Vibrio cholera CIRS 101]
gi|258583954|gb|EEW08745.1| transcription termination factor Rho [Vibrio mimicus VM603]
gi|258587184|gb|EEW11896.1| transcription termination factor Rho [Vibrio mimicus VM573]
gi|262027823|gb|EEY46488.1| transcription termination factor Rho [Vibrio mimicus VM223]
gi|262028375|gb|EEY47031.1| transcription termination factor Rho [Vibrio cholerae INDRE 91/1]
gi|262348869|gb|EEY98010.1| transcription termination factor Rho [Vibrio sp. RC586]
gi|297534176|gb|EFH73015.1| transcription termination factor Rho [Vibrio cholerae RC385]
gi|297540443|gb|EFH76502.1| transcription termination factor Rho [Vibrio cholerae MAK 757]
gi|340043087|gb|EGR04048.1| transcription termination factor Rho [Vibrio cholerae HE39]
gi|340045523|gb|EGR06466.1| transcription termination factor Rho [Vibrio cholerae HCUF01]
gi|340048587|gb|EGR09504.1| transcription termination factor Rho [Vibrio cholerae HE48]
gi|341626429|gb|EGS51823.1| transcription termination factor Rho [Vibrio cholerae HC-70A1]
gi|341641759|gb|EGS66283.1| transcription termination factor Rho [Vibrio cholerae HFU-02]
gi|341648989|gb|EGS73000.1| transcription termination factor Rho [Vibrio cholerae HC-38A1]
gi|342322786|gb|EGU18574.1| transcription termination factor Rho [Vibrio mimicus SX-4]
gi|356423221|gb|EHH76675.1| transcription termination factor Rho [Vibrio cholerae HC-21A1]
gi|356435633|gb|EHH88784.1| transcription termination factor Rho [Vibrio cholerae HC-22A1]
gi|356438398|gb|EHH91425.1| transcription termination factor Rho [Vibrio cholerae HC-28A1]
gi|356444158|gb|EHH96971.1| transcription termination factor Rho [Vibrio cholerae HC-32A1]
gi|356451101|gb|EHI03805.1| transcription termination factor Rho [Vibrio cholerae HC-33A2]
gi|356455347|gb|EHI07990.1| transcription termination factor Rho [Vibrio cholerae HC-61A1]
gi|356648099|gb|AET28154.1| transcription termination factor Rho [Vibrio cholerae O1 str.
2010EL-1786]
gi|378793701|gb|AFC57172.1| transcription termination factor Rho [Vibrio cholerae IEC224]
gi|395924450|gb|EJH35253.1| transcription termination factor Rho [Vibrio cholerae CP1041(14)]
gi|395926370|gb|EJH37158.1| transcription termination factor Rho [Vibrio cholerae CP1038(11)]
gi|395934933|gb|EJH45670.1| transcription termination factor Rho [Vibrio cholerae CP1042(15)]
gi|395938192|gb|EJH48890.1| transcription termination factor Rho [Vibrio cholerae CP1048(21)]
gi|395947016|gb|EJH57674.1| transcription termination factor Rho [Vibrio cholerae HC-43B1]
gi|395947204|gb|EJH57861.1| transcription termination factor Rho [Vibrio cholerae HC-20A2]
gi|395955594|gb|EJH66190.1| transcription termination factor Rho [Vibrio cholerae HE-45]
gi|395964416|gb|EJH74638.1| transcription termination factor Rho [Vibrio cholerae HC-56A2]
gi|395979877|gb|EJH89200.1| transcription termination factor Rho [Vibrio cholerae CP1047(20)]
gi|408010920|gb|EKG48763.1| transcription termination factor Rho [Vibrio cholerae HC-39A1]
gi|408016670|gb|EKG54202.1| transcription termination factor Rho [Vibrio cholerae HC-50A1]
gi|408017592|gb|EKG55085.1| transcription termination factor Rho [Vibrio cholerae HC-41A1]
gi|408028129|gb|EKG65044.1| transcription termination factor Rho [Vibrio cholerae HC-55A1]
gi|408057914|gb|EKG92741.1| transcription termination factor Rho [Vibrio cholerae HC-81A2]
gi|408059598|gb|EKG94349.1| transcription termination factor Rho [Vibrio cholerae HC-51A1]
gi|408624370|gb|EKK97319.1| transcription termination factor Rho [Vibrio cholerae HC-1A2]
gi|408632117|gb|EKL04603.1| transcription termination factor Rho [Vibrio cholerae HC-41B1]
gi|408637141|gb|EKL09226.1| transcription termination factor Rho [Vibrio cholerae HC-55C2]
gi|408645762|gb|EKL17400.1| transcription termination factor Rho [Vibrio cholerae HC-59A1]
gi|408652554|gb|EKL23769.1| transcription termination factor Rho [Vibrio cholerae HC-61A2]
gi|408660862|gb|EKL31864.1| transcription termination factor Rho [Vibrio cholerae HC-62A1]
gi|408662310|gb|EKL33260.1| transcription termination factor Rho [Vibrio cholerae HE-40]
gi|408850331|gb|EKL90298.1| transcription termination factor Rho [Vibrio cholerae HC-17A2]
gi|408855172|gb|EKL94894.1| transcription termination factor Rho [Vibrio cholerae HC-02C1]
gi|408859395|gb|EKL99056.1| transcription termination factor Rho [Vibrio cholerae HC-46B1]
gi|408862368|gb|EKM01885.1| transcription termination factor Rho [Vibrio cholerae HC-55B2]
gi|408867454|gb|EKM06814.1| transcription termination factor Rho [Vibrio cholerae HC-44C1]
gi|408875777|gb|EKM14920.1| transcription termination factor Rho [Vibrio cholerae HC-62B1]
gi|408882240|gb|EKM21084.1| transcription termination factor Rho [Vibrio cholerae HC-69A1]
gi|429226416|gb|EKY32537.1| Transcription termination factor Rho [Vibrio cholerae PS15]
gi|443433290|gb|ELS75801.1| transcription termination factor Rho [Vibrio cholerae HC-64A1]
gi|443437206|gb|ELS83306.1| transcription termination factor Rho [Vibrio cholerae HC-65A1]
gi|443441037|gb|ELS90708.1| transcription termination factor Rho [Vibrio cholerae HC-67A1]
gi|443444775|gb|ELS98037.1| transcription termination factor Rho [Vibrio cholerae HC-68A1]
gi|443451669|gb|ELT11918.1| transcription termination factor Rho [Vibrio cholerae HC-72A2]
gi|443455477|gb|ELT19247.1| transcription termination factor Rho [Vibrio cholerae HC-78A1]
gi|443460104|gb|ELT27494.1| transcription termination factor Rho [Vibrio cholerae HC-7A1]
gi|443462838|gb|ELT33860.1| transcription termination factor Rho [Vibrio cholerae HC-80A1]
gi|448265976|gb|EMB03208.1| Transcription termination factor Rho [Vibrio cholerae O1 str. Inaba
G4222]
gi|448266019|gb|EMB03251.1| Transcription termination factor Rho [Vibrio cholerae O1 str. Inaba
G4222]
gi|449078883|gb|EMB49811.1| transcription termination factor Rho [Vibrio mimicus CAIM 602]
Length = 419
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/352 (70%), Positives = 307/352 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETD 394
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 82/112 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN P + ++ IL
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDRPDNARNKIL 132
>gi|260770666|ref|ZP_05879597.1| transcription termination factor Rho [Vibrio furnissii CIP 102972]
gi|375129213|ref|YP_004991308.1| transcription termination factor Rho [Vibrio furnissii NCTC 11218]
gi|260614392|gb|EEX39580.1| transcription termination factor Rho [Vibrio furnissii CIP 102972]
gi|315178382|gb|ADT85296.1| transcription termination factor Rho [Vibrio furnissii NCTC 11218]
Length = 409
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/352 (70%), Positives = 307/352 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 33 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 92
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 93 PPKEGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 152
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR
Sbjct: 153 DLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRL 212
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 213 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 272
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 273 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 332
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 333 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETD 384
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 167 VAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 226
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 227 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 286
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 287 PKRFFGAAR 295
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 82/112 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++F+I K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 11 LGLENLARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 70
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN P + ++ IL
Sbjct: 71 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDKPDNARNKIL 122
>gi|261210409|ref|ZP_05924703.1| transcription termination factor Rho [Vibrio sp. RC341]
gi|422908838|ref|ZP_16943506.1| transcription termination factor Rho [Vibrio cholerae HE-09]
gi|424658199|ref|ZP_18095463.1| transcription termination factor Rho [Vibrio cholerae HE-16]
gi|260840467|gb|EEX67033.1| transcription termination factor Rho [Vibrio sp. RC341]
gi|341637946|gb|EGS62607.1| transcription termination factor Rho [Vibrio cholerae HE-09]
gi|408056092|gb|EKG90990.1| transcription termination factor Rho [Vibrio cholerae HE-16]
Length = 409
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 33 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 92
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 93 PPKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 152
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR
Sbjct: 153 DLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRL 212
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASG
Sbjct: 213 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASG 272
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 273 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 332
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 333 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPM 380
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 167 VAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 226
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 227 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 286
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 287 PKRFFGAAR 295
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 82/112 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 11 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 70
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN P + ++ IL
Sbjct: 71 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDRPDNARNKIL 122
>gi|254784463|ref|YP_003071891.1| transcription termination factor Rho [Teredinibacter turnerae
T7901]
gi|237685295|gb|ACR12559.1| transcription termination factor Rho [Teredinibacter turnerae
T7901]
Length = 419
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 254/359 (70%), Positives = 313/359 (87%), Gaps = 2/359 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+GDG LE+L DGFGFLRS GS+Y+A DDIY+SPSQIRRFNL TGD + G+IR PK
Sbjct: 46 GEDIYGDGVLEILQDGFGFLRSSGSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N +KPE S+N+ LF+NLTPL P L+LE S E++TGRIIDLI
Sbjct: 106 EGERYFALLKVNEINFDKPENSRNKILFENLTPLFPTSRLVLETGNGSSEDLTGRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIGKGQRGL+VA PK+GK+I++Q++A AIT N+ E +IV+LIDERPEEVTEMQRSVRG
Sbjct: 166 SPIGKGQRGLIVAPPKAGKTIMMQNVAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEP RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEPPSRHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSL+I+ATALI+TGS+MD+VIYEEFKGTGN+E+HL
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLSIVATALIDTGSKMDEVIYEEFKGTGNLELHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKR 363
+R++AEKRVYPAIN+ +SGTRRE+LL+++D+L ++W+LRKLL+ M + F + R
Sbjct: 346 DRKVAEKRVYPAINIRRSGTRREDLLMREDELSRVWILRKLLHD--MEDIAATEFLVDR 402
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q++A AIT N+ E +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMMQNVAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL+R
Sbjct: 237 SRHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + S+ R RKQ+++F I K+ + GE I+GDG LE+L DGFGFLRS GS+Y+A DDI
Sbjct: 20 EMGMESLARSRKQDVIFNILKRHARSGEDIYGDGVLEILQDGFGFLRSSGSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ ++N P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNEINFDKPENSRNKIL 132
>gi|331006630|ref|ZP_08329915.1| Transcription termination factor Rho [gamma proteobacterium
IMCC1989]
gi|330419569|gb|EGG93950.1| Transcription termination factor Rho [gamma proteobacterium
IMCC1989]
Length = 419
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/359 (71%), Positives = 311/359 (86%), Gaps = 3/359 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ ++N +KPE SKN+ LF+NLTPL P L LE S E++TGRII
Sbjct: 103 PPKEGERYFALLKVNQINFDKPENSKNKILFENLTPLFPDDRLTLEAGNGSTEDLTGRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL++PIGKGQRGL+VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLVSPIGKGQRGLIVAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+E+AKRLVE KKDVIILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVVASTFDEPPSRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL+RPKRFFGAARNIEEGGSL+I+ATALI+TGS+MD+VIYEEFKGTGN+E
Sbjct: 283 KVLTGGVDAHALERPKRFFGAARNIEEGGSLSIVATALIDTGSKMDEVIYEEFKGTGNLE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL---TMTSFTVS 357
+HL+R++AEKR+YPAIN+ +SGTRREELLI++D+LQ++W+LRKLL + T F V
Sbjct: 343 LHLDRKVAEKRIYPAINVRRSGTRREELLIKEDELQRVWILRKLLNDMEDVNATEFLVD 401
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL+R
Sbjct: 237 SRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ +++V R RKQ+++F I K+ K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGLDNVARSRKQDIIFNILKRHAKGGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ ++N P++ K+ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNQINFDKPENSKNKIL 132
>gi|238021584|ref|ZP_04602010.1| hypothetical protein GCWU000324_01484 [Kingella oralis ATCC 51147]
gi|237866198|gb|EEP67240.1| hypothetical protein GCWU000324_01484 [Kingella oralis ATCC 51147]
Length = 475
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/345 (72%), Positives = 306/345 (88%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G+ G+LEVLPDG+GFLR+ ++Y+A+ DDIY+SP QIRRFNLHTGD +EG +RVPK
Sbjct: 46 GQEFICSGTLEVLPDGYGFLRNAATSYLANPDDIYVSPQQIRRFNLHTGDTIEGTVRVPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
N E+YFAL+++ VNG+ PE S+++ LF+NLTPL P + L LER+ +S ENITGRIIDLI
Sbjct: 106 NDEKYFALVRLDSVNGDHPESSRHKILFENLTPLFPNRQLKLERDNQSSENITGRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIG GQR LLVA PK+GK+++LQ+IAHAIT N+ +A +IV+LIDERPEEVTEM RSVRG
Sbjct: 166 SPIGFGQRALLVAPPKTGKTVMLQNIAHAITANYPDAELIVLLIDERPEEVTEMLRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA HVQVAEMV+EKAKR+VE KKDVIILLDSITRLARAYNTV+P SGKVL
Sbjct: 226 EVVASTFDEPAQCHVQVAEMVIEKAKRMVEHKKDVIILLDSITRLARAYNTVVPMSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVI+EEFKGTGNME+ L
Sbjct: 286 TGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIFEEFKGTGNMELSL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RRLAEKRV+PAIN+NKSGTRREEL++ D+LQ++W+LR++++ +
Sbjct: 346 DRRLAEKRVFPAININKSGTRREELIVPADQLQRMWMLRRVIHPM 390
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/283 (45%), Positives = 167/283 (59%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
++ RLRKQ+L+F I ++ + G+ G+LEVLPDG+GFLR+ ++Y+A+ DDIY+S
Sbjct: 23 IDGANRLRKQDLVFQIVRELIQNGQEFICSGTLEVLPDGYGFLRNAATSYLANPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFAL----------------------------- 481
P QIRRFNLHTG +G +RVPKN E+YFAL
Sbjct: 83 PQQIRRFNLHTGDTIEGTVRVPKNDEKYFALVRLDSVNGDHPESSRHKILFENLTPLFPN 142
Query: 482 --LKIKKVN-------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
LK+++ N VA PK+GK+++LQ+IAHAIT N+ +A
Sbjct: 143 RQLKLERDNQSSENITGRIIDLISPIGFGQRALLVAPPKTGKTVMLQNIAHAITANYPDA 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEM RSVRGEV+ASTFDEPA
Sbjct: 203 ELIVLLIDERPEEVTEMLRSVRGEVVASTFDEPAQCHVQVAEMVIEKAKRMVEHKKDVII 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGKVLTGGVD++AL RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTVVPMSGKVLTGGVDAHALHRPKRFFGAAR 305
>gi|410612841|ref|ZP_11323912.1| transcription termination factor Rho [Glaciecola psychrophila 170]
gi|410167524|dbj|GAC37801.1| transcription termination factor Rho [Glaciecola psychrophila 170]
Length = 421
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/348 (72%), Positives = 306/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSNDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLKI +VN ++PE ++N+ LF+NLTPLH + L++ER S E+IT R++D
Sbjct: 104 PKDTERYFALLKISEVNYDRPENARNKILFENLTPLHANERLIMERGNGSSEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG+GQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 344 HLNRKIAEKRVFPAIDYNRSGTRREELLTTPDELQKMWILRKIVHEMS 391
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR VRGEVIASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++++ ++ R RKQ+++F+I K K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMKLENMARARKQDIIFSILKSHAKSGEDIFGDGVLEILQDGFGFLRSNDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+ ERYFALLKI +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKDTERYFALLKISEVNYDRPENARNKIL 132
>gi|336122593|ref|YP_004564641.1| transcription termination factor rho [Vibrio anguillarum 775]
gi|335340316|gb|AEH31599.1| Transcription termination factor rho [Vibrio anguillarum 775]
Length = 427
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 306/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 52 KSGEDIFGDGVLEILQDGFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDSVSGKIRP 111
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++D
Sbjct: 112 PKEGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMIMERGNGSTEDITARVLD 171
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 172 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPDCVLMVLLIDERPEEVTEMQRLV 231
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 232 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 291
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 292 VLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 351
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 352 HLNRKIAEKRVFPAIDFNRSGTRREELLTKPDELQKMWILRKIVHPMS 399
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++F+I K K GE IFGDG LE+L DGFGFLRS +Y+A DDIY
Sbjct: 29 LGLENLARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSADCSYLAGPDDIY 88
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN
Sbjct: 89 VSPSQIRRFNLRTGDSVSGKIRPPKEGERYFALLKVNTVNHDKPDNARNKILFENLTPLH 148
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 149 ANERMIMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHP 208
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 209 DCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 268
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 269 VILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRFFGAAR 313
>gi|91788133|ref|YP_549085.1| transcription termination factor Rho [Polaromonas sp. JS666]
gi|91697358|gb|ABE44187.1| transcription termination factor Rho [Polaromonas sp. JS666]
Length = 420
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/349 (71%), Positives = 307/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I DG LEVLPDGFGFLR+ S+Y AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIVADGVLEVLPDGFGFLRAPDSSYTASTDDIYISPSQIRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ KVN PE +K++ +F+NLTPL P++ LER+I+++EN+T RI
Sbjct: 102 RTPKDGERYFALNKLDKVNDGAPEDNKHKVMFENLTPLFPREQFKLERDIKAEENLTSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQR LLVA PKSGK++++Q+IAHAIT N+ E +M+V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGKGQRALLVAPPKSGKTVMMQNIAHAITANYPEVVMMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHV VAEMV+E+AKRLVE+ KDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 SVRGEVISSTFDEPAARHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAAR IEEGGSLTII TAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARKIEEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+PAI+LN+SGTR+EELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLDRRLYEKRVFPAIHLNRSGTRKEELLLAPEILQKSRILRQFMYNM 390
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 95/130 (73%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++Q+IAHAIT N+ E +M+V+L+DERPEEVTEMQRSVRGEVI+STFDEPA
Sbjct: 177 VAPPKSGKTVMMQNIAHAITANYPEVVMMVLLVDERPEEVTEMQRSVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 120/201 (59%), Gaps = 18/201 (8%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ +V R+RKQELMFAI KK+ K GE I DG LEVLPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENVGRMRKQELMFAIIKKRAKTGETIVADGVLEVLPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLR+ S+Y AS+DDIY+SPSQIRRFNLHTG + +GE+R PK+GERYFAL K+ KVN
Sbjct: 62 FGFLRAPDSSYTASTDDIYISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVND 121
Query: 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL 549
+P+ K +M L P E +++R ++ E ++ +
Sbjct: 122 GAPEDNK----------------HKVMFENLTPLFPREQFKLERDIKAEENLTSRIIDII 165
Query: 550 SVMCKLARAYNTVIPASGKVL 570
+ + K RA P SGK +
Sbjct: 166 APIGKGQRALLVAPPKSGKTV 186
>gi|337279988|ref|YP_004619460.1| transcription termination factor rho [Ramlibacter tataouinensis
TTB310]
gi|334731065|gb|AEG93441.1| Candidate transcription termination factor rho [Ramlibacter
tataouinensis TTB310]
Length = 428
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 246/350 (70%), Positives = 306/350 (87%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ + GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 49 RARAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 108
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLER-NIESKENITGR 119
R PK+GERYFAL K+ VNG PE +K++ +F+NLTPL PK+ + LER N + ENIT R
Sbjct: 109 RTPKDGERYFALTKLDMVNGGPPEQNKHKVMFENLTPLFPKEQMKLERDNFKGDENITAR 168
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
+ID+IAPIGKGQR LLVA PKSGK++++QHIAHAI N+ ++ M+V+L+DERPEEVTEMQ
Sbjct: 169 VIDIIAPIGKGQRALLVAPPKSGKTVMMQHIAHAIAANYPDSHMMVLLVDERPEEVTEMQ 228
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RSV+ EVIASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+
Sbjct: 229 RSVKAEVIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPS 288
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRF GAARN+EEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 289 SGKVLTGGVDANALQRPKRFLGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGN 348
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+P+I LN+SGTRREELL+ + LQK +LR+ +Y++
Sbjct: 349 CEIHLDRRLYEKRVFPSIQLNRSGTRREELLLAPEILQKTRILRQFMYNM 398
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 90/116 (77%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +LE+ + R+RKQELMFAI KK+ + GE++F DG LE+LPDGFGFLRS +++ AS+
Sbjct: 24 QAEELEIENTGRMRKQELMFAIIKKRARAGEQVFADGVLEILPDGFGFLRSPDTSFTAST 83
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN P+ K ++
Sbjct: 84 DDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDMVNGGPPEQNKHKVM 139
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAI N+ ++ M+V+L+DERPEEVTEMQRSV+ EVIASTFDEPA
Sbjct: 185 VAPPKSGKTVMMQHIAHAIAANYPDSHMMVLLVDERPEEVTEMQRSVKAEVIASTFDEPA 244
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 245 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALQR 304
Query: 582 PKRFFGAAR 590
PKRF GAAR
Sbjct: 305 PKRFLGAAR 313
>gi|347818155|ref|ZP_08871589.1| transcription termination factor Rho [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 420
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 244/349 (69%), Positives = 307/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE++F DG LE+LPDGFGFLRS +++ AS+DDIY+SPSQ+RRFNLHTGD +EGE+
Sbjct: 42 RAKAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ VNG PE +K++ +F+NLTPL PK+ + LER I+ +ENITGRI
Sbjct: 102 RTPKDGERYFALTKLDAVNGGPPEQNKHKVMFENLTPLFPKEQMRLEREIKGEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAP+G+GQR L+VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPLGRGQRALIVAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GE+IASTFDEPA RHV VAEMV+E+AKRLVE+KKDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 TVKGEIIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+ ALQRPKRFFGAAR +EEGGSLTI+ATAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDAAALQRPKRFFGAARKVEEGGSLTIVATALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL RRL EKRV+PAI LNKSGTRREELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLNRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYNM 390
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 120/204 (58%), Gaps = 24/204 (11%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + +D+E + R+RKQELMFAI KK+ K GE++F DG LE+LPDG
Sbjct: 4 NELKALHVSEVLKQAEELDIE--NTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS +++ AS+DDIY+SPSQ+RRFNLHTG + +GE+R PK+GERYFAL K+ VN
Sbjct: 62 FGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDAVNG 121
Query: 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL 549
P+ K +M L P+E ++R ++GE +
Sbjct: 122 GPPEQNK----------------HKVMFENLTPLFPKEQMRLEREIKGE---ENITGRII 162
Query: 550 SVMCKLARAYNTVI---PASGKVL 570
++ L R +I P SGK +
Sbjct: 163 DIIAPLGRGQRALIVAPPKSGKTV 186
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++QHIAHAIT N+ + ++V+L+DERPEEVTEMQR+V+GE+IASTFDEPA
Sbjct: 177 VAPPKSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+ ALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|300113236|ref|YP_003759811.1| transcription termination factor Rho [Nitrosococcus watsonii C-113]
gi|299539173|gb|ADJ27490.1| transcription termination factor Rho [Nitrosococcus watsonii C-113]
Length = 418
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 254/344 (73%), Positives = 300/344 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+G+G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD VEG+IR
Sbjct: 44 KNGEDIYGNGVLELLQDGFGFLRSASASYLAGPDDIYVSPSQIRRFGLRTGDTVEGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N E PE S+N+ LF+NLTPL + L+LER S E++T R+ID
Sbjct: 104 PKEGERYFALLKVSSINFEPPEQSRNKVLFENLTPLFANERLVLERGNGSTEDLTPRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+ P+GKGQRGL+V+SPKSGK+++LQ+IA +I NH E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LVVPVGKGQRGLIVSSPKSGKTVMLQNIAQSIAANHPECYLIVLLIDERPEEVTEMARSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HLER+LAEKR+YPAIN+++SGTRREELL + LQK W+L KLL
Sbjct: 344 HLERKLAEKRIYPAINISRSGTRREELLTHPENLQKTWILHKLL 387
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+SPKSGK+++LQ+IA +I NH E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 177 VSSPKSGKTVMLQNIAQSIAANHPECYLIVLLIDERPEEVTEMARSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 88/129 (68%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +L Q++ LE + RLR+Q+L+FA+ K K GE I+G+G LE+L DGFG
Sbjct: 6 LKTKSASELLDIAQSMGLE--GISRLRRQDLIFALLKAHAKNGEDIYGNGVLELLQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +N
Sbjct: 64 FLRSASASYLAGPDDIYVSPSQIRRFGLRTGDTVEGKIRPPKEGERYFALLKVSSINFEP 123
Query: 492 PKSGKSIIL 500
P+ ++ +L
Sbjct: 124 PEQSRNKVL 132
>gi|229524735|ref|ZP_04414140.1| transcription termination factor Rho [Vibrio cholerae bv. albensis
VL426]
gi|229338316|gb|EEO03333.1| transcription termination factor Rho [Vibrio cholerae bv. albensis
VL426]
Length = 419
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/352 (70%), Positives = 306/352 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I +NH E + +V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVRMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETD 394
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I +NH E + +V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIASNHPECVRMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 82/112 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN P + ++ IL
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDRPDNARNKIL 132
>gi|365539713|ref|ZP_09364888.1| transcription termination factor Rho [Vibrio ordalii ATCC 33509]
Length = 419
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/349 (71%), Positives = 306/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDSVSGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMIMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKPDELQKMWILRKIVHPMS 391
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 137/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++F+I K K GE IFGDG LE+L DGFGFLRS +Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSADCSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSVSGKIRPPKEGERYFALLKVNTVNHDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMIMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 DCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|37681365|ref|NP_935974.1| transcription termination factor Rho [Vibrio vulnificus YJ016]
gi|37200117|dbj|BAC95945.1| transcription termination factor [Vibrio vulnificus YJ016]
Length = 427
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/351 (70%), Positives = 308/351 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 52 KGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRP 111
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH + +++ER S E+IT R++D
Sbjct: 112 PKDGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLD 171
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +IT NH E +++V+LIDERPEEVTEMQR V
Sbjct: 172 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNHPECVLMVLLIDERPEEVTEMQRLV 231
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 232 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 291
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 292 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 351
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 352 HLNRKIAEKRVFPAIDFNRSGTRREELLTKPDELQKMWILRKIVHPMGETD 402
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 170/285 (59%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 29 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 88
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 89 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDRPDNARNKILFENLTPLH 148
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +IT NH
Sbjct: 149 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNHP 208
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 209 ECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 268
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 269 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 313
>gi|398807128|ref|ZP_10566014.1| transcription termination factor [Polaromonas sp. CF318]
gi|398086087|gb|EJL76722.1| transcription termination factor [Polaromonas sp. CF318]
Length = 420
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/349 (71%), Positives = 307/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I DG LEVLPDGFGFLR+ S+Y AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RAKTGETIVADGVLEVLPDGFGFLRAPDSSYTASTDDIYISPSQIRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ KVN PE +K++ +F+NLTPL P++ LER+I+ +EN+T RI
Sbjct: 102 RTPKDGERYFALNKLDKVNDGLPEDNKHKVMFENLTPLFPREQFKLERDIKGEENLTSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+++PIGKGQR LLVA PKSGK++++Q+IAHAIT N+ E +M+V+L+DERPEEVTEMQR
Sbjct: 162 IDIVSPIGKGQRALLVAPPKSGKTVMMQNIAHAITANYPEVVMMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHV VAEMV+E+AKRLVE+ KDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 SVRGEVISSTFDEPAARHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII TAL++TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+PAI+LN+SGTR+EELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLDRRLYEKRVFPAIHLNRSGTRKEELLLAPEILQKSRILRQFMYNM 390
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 120/201 (59%), Gaps = 18/201 (8%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ +V R+RKQELMFAI KK+ K GE I DG LEVLPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENVGRMRKQELMFAIIKKRAKTGETIVADGVLEVLPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLR+ S+Y AS+DDIY+SPSQIRRFNLHTG + +GE+R PK+GERYFAL K+ KVN
Sbjct: 62 FGFLRAPDSSYTASTDDIYISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVND 121
Query: 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL 549
P+ K +M L P E +++R ++GE ++ +
Sbjct: 122 GLPEDNK----------------HKVMFENLTPLFPREQFKLERDIKGEENLTSRIIDIV 165
Query: 550 SVMCKLARAYNTVIPASGKVL 570
S + K RA P SGK +
Sbjct: 166 SPIGKGQRALLVAPPKSGKTV 186
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++Q+IAHAIT N+ E +M+V+L+DERPEEVTEMQRSVRGEVI+STFDEPA
Sbjct: 177 VAPPKSGKTVMMQNIAHAITANYPEVVMMVLLVDERPEEVTEMQRSVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|406915917|gb|EKD54955.1| hypothetical protein ACD_60C00030G0005 [uncultured bacterium]
Length = 418
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 253/348 (72%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKRGEDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +N + PE +KN+ LF+NLTPL + L +E S E+IT RII
Sbjct: 103 PPKEGERYFALLKVDHINFDAPENAKNKVLFENLTPLFANERLKMECGNGSTEDITARII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+V+ PK+GK+++LQ+IAH+I NH E ++V+LIDERPEEVTEM RS
Sbjct: 163 DLASPIGKGQRGLIVSPPKAGKTMMLQNIAHSIAQNHPECYLMVLLIDERPEEVTEMTRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+PASG
Sbjct: 223 VRGEVIASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIAT+L+ETGS+MDDVIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATSLVETGSKMDDVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL+RR++E+R+YPAIN+NKSGTRREELL + D++QK+W+LRKLL +
Sbjct: 343 IHLDRRISERRIYPAININKSGTRREELLTKPDEIQKMWILRKLLQPM 390
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IAH+I NH E ++V+LIDERPEEVTEM RSVRGEVIASTFDEPA
Sbjct: 177 VSPPKAGKTMMLQNIAHSIAQNHPECYLMVLLIDERPEEVTEMTRSVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 NRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FAI K K GE I+GDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFAILKAHAKRGEDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N +P++ K+ +L
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVDHINFDAPENAKNKVL 132
>gi|389794510|ref|ZP_10197662.1| transcription termination factor Rho [Rhodanobacter fulvus Jip2]
gi|388432316|gb|EIL89330.1| transcription termination factor Rho [Rhodanobacter fulvus Jip2]
Length = 617
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/345 (72%), Positives = 301/345 (87%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I+ +G LE+L DGFGF+RS +Y+A DDIY+SPSQIRRFNL TGD++ G +R PK
Sbjct: 245 GGGIWAEGVLEILQDGFGFMRSADESYLAGPDDIYVSPSQIRRFNLRTGDYITGRVRHPK 304
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFA+L+++ +NG+ PE SKN+ LF+NLTPL P+K LER S E+ITGRI+DLI
Sbjct: 305 EGERYFAMLRVETINGDPPEASKNKMLFENLTPLFPRKAFKLERGNGSSEDITGRILDLI 364
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQRGL+V+ PKSGK+++LQ+IA AI NH EA +I++L+DERPEEVTE+ R+VR
Sbjct: 365 APIGKGQRGLIVSQPKSGKTMMLQNIAQAIQYNHPEAHLIILLVDERPEEVTEIARTVRA 424
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDVIILLDSITRLARAYNTVIP+SGKVL
Sbjct: 425 EVISSTFDEPAVRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVL 484
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL ETGS+MD+VIYEEFKGTGNMEVHL
Sbjct: 485 TGGVDANALQRPKRFFGAARNVEEGGSLTIIATALTETGSKMDEVIYEEFKGTGNMEVHL 544
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
RR++EKRVYPAI++N+SGTRRE+LLI D L KIW+LRKLL+ +
Sbjct: 545 SRRISEKRVYPAIDINRSGTRREDLLIDPDMLAKIWILRKLLHPM 589
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PKSGK+++LQ+IA AI NH EA +I++L+DERPEEVTE+ R+VR EVI+STFDEPA
Sbjct: 376 VSQPKSGKTMMLQNIAQAIQYNHPEAHLIILLVDERPEEVTEIARTVRAEVISSTFDEPA 435
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 436 VRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 495
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 496 PKRFFGAAR 504
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 83/128 (64%), Gaps = 3/128 (2%)
Query: 373 KDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGF 432
K+A L AE+ I + R RKQ+++F + K + G I+ +G LE+L DGFGF
Sbjct: 207 KNAPQLLEFAESLGIH---EGIARARKQDVIFNVLKAHARSGGGIWAEGVLEILQDGFGF 263
Query: 433 LRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
+RS +Y+A DDIY+SPSQIRRFNL TG G +R PK GERYFA+L+++ +N P
Sbjct: 264 MRSADESYLAGPDDIYVSPSQIRRFNLRTGDYITGRVRHPKEGERYFAMLRVETINGDPP 323
Query: 493 KSGKSIIL 500
++ K+ +L
Sbjct: 324 EASKNKML 331
>gi|381396003|ref|ZP_09921695.1| transcription termination factor Rho [Glaciecola punicea DSM 14233
= ACAM 611]
gi|379328183|dbj|GAB56828.1| transcription termination factor Rho [Glaciecola punicea DSM 14233
= ACAM 611]
Length = 457
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 254/361 (70%), Positives = 309/361 (85%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG+LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 82 KGGEDIFGDGALEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 141
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLKI++VN +KPE S+N+ LF+NLTPLH L +ER S E+IT R++D
Sbjct: 142 PKDTERYFALLKIREVNFDKPENSRNKILFENLTPLHANDRLRMERGNGSTEDITARVLD 201
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 202 LASPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPDCLLMVLLIDERPEEVTEMQRLV 261
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 262 NGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 321
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 322 VLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEI 381
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL R++AEKRV+PAI++N+SGTRREELL D+LQK+W+LRK+++ M+ F I
Sbjct: 382 HLNRKIAEKRVFPAIDINRSGTRREELLTTPDELQKMWILRKIVHE--MSEVDCMEFMIS 439
Query: 363 R 363
R
Sbjct: 440 R 440
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V GEVIASTFDEPA
Sbjct: 215 VAPPKAGKTLLLQNIAQSIAANHPDCLLMVLLIDERPEEVTEMQRLVNGEVIASTFDEPA 274
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 275 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 334
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 335 PKRFFGAAR 343
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 107/167 (64%), Gaps = 4/167 (2%)
Query: 336 LQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNL--LKDACMPLVLAETQTIDLEVNS 393
L I V L+ SF +T P NL LK + ++A ++T+ LE +
Sbjct: 6 LANIHVCITLISGNRAASFVNLTTRNNKTDPPNMNLTDLKSKPINELVALSETMGLE--N 63
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
+ R RKQ+++F+I K K GE IFGDG+LE+L DGFGFLRS S+Y+A DDIY+SPSQ
Sbjct: 64 LARARKQDIIFSILKAHAKGGEDIFGDGALEILQDGFGFLRSADSSYLAGPDDIYVSPSQ 123
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G+IR PK+ ERYFALLKI++VN P++ ++ IL
Sbjct: 124 IRRFNLRTGDTISGKIRPPKDTERYFALLKIREVNFDKPENSRNKIL 170
>gi|352086107|ref|ZP_08953686.1| transcription termination factor Rho [Rhodanobacter sp. 2APBS1]
gi|351679741|gb|EHA62875.1| transcription termination factor Rho [Rhodanobacter sp. 2APBS1]
Length = 599
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 253/345 (73%), Positives = 300/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD++ G +R PK
Sbjct: 227 GGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQIRRFNLRTGDYITGRVRHPK 286
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFA+L++ +NG+ PE SKN+ LF+NLTPL P+K LER S E+ITGRI+DLI
Sbjct: 287 EGERYFAMLRVDDINGDPPEASKNKMLFENLTPLFPRKAYKLERGNGSSEDITGRILDLI 346
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQRGL+V+ PKSGK+++LQ+IA AI NH EA +I++LIDERPEEVTE+ R+VR
Sbjct: 347 APIGKGQRGLIVSQPKSGKTMMLQNIAQAIQYNHPEAHLIMLLIDERPEEVTEIARTVRA 406
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDVIILLDSITRLARAYNTVIP+SGKVL
Sbjct: 407 EVISSTFDEPAVRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVL 466
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL ETGS+MD+VIYEEFKGTGNMEVHL
Sbjct: 467 TGGVDANALQRPKRFFGAARNVEEGGSLTIIATALTETGSKMDEVIYEEFKGTGNMEVHL 526
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
RR++EKRVYPAI++N+SGTRRE+LLI D L KIW+LRKLL+ +
Sbjct: 527 SRRISEKRVYPAIDINRSGTRREDLLIDPDMLAKIWILRKLLHPM 571
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PKSGK+++LQ+IA AI NH EA +I++LIDERPEEVTE+ R+VR EVI+STFDEPA
Sbjct: 358 VSQPKSGKTMMLQNIAQAIQYNHPEAHLIMLLIDERPEEVTEIARTVRAEVISSTFDEPA 417
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 418 VRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 477
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 478 PKRFFGAAR 486
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++F + K + G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQ
Sbjct: 207 VARARKQDVIFNVLKAHARSGGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQ 266
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G +R PK GERYFA+L++ +N P++ K+ +L
Sbjct: 267 IRRFNLRTGDYITGRVRHPKEGERYFAMLRVDDINGDPPEASKNKML 313
>gi|27364379|ref|NP_759907.1| transcription termination factor Rho [Vibrio vulnificus CMCP6]
gi|320157762|ref|YP_004190141.1| transcription termination factor Rho [Vibrio vulnificus MO6-24/O]
gi|27360498|gb|AAO09434.1| transcription termination factor Rho [Vibrio vulnificus CMCP6]
gi|319933074|gb|ADV87938.1| transcription termination factor Rho [Vibrio vulnificus MO6-24/O]
Length = 419
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/352 (70%), Positives = 308/352 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT NH E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNHPECVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKPDELQKMWILRKIVHPMGETD 394
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 170/285 (59%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDRPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +IT NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|383316081|ref|YP_005376923.1| transcription termination factor Rho [Frateuria aurantia DSM 6220]
gi|379043185|gb|AFC85241.1| transcription termination factor Rho [Frateuria aurantia DSM 6220]
Length = 583
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/345 (72%), Positives = 301/345 (87%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD++ G +R PK
Sbjct: 211 GGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQIRRFNLRTGDYITGRVRHPK 270
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ +NG+ PE SKN+ LF+NLTPL P++ LER S E+ITGRI+DL+
Sbjct: 271 EGERYFALLKVDDINGDPPEASKNKVLFENLTPLFPRQAFKLERGNGSSEDITGRILDLV 330
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIG+GQR L+VA PK+GK+++LQ+IA AI NH +A +I+++IDERPEEVTE+ RSVR
Sbjct: 331 APIGRGQRALIVAQPKAGKTMMLQNIAQAIMYNHPDAHLIMLMIDERPEEVTEIARSVRA 390
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDVIILLDSITRLARAYNTV+P+SGKVL
Sbjct: 391 EVISSTFDEPAVRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVL 450
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSLTI+ATAL ETGS+MD+VIYEEFKGTGNMEVHL
Sbjct: 451 TGGVDANALQRPKRFFGAARNIEEGGSLTIVATALTETGSKMDEVIYEEFKGTGNMEVHL 510
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
RR+AEKRVYPAI++N+SGTRRE+LLI+ D LQKIW+LRKLL+ +
Sbjct: 511 NRRIAEKRVYPAIDINRSGTRREDLLIEPDMLQKIWILRKLLHPM 555
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA AI NH +A +I+++IDERPEEVTE+ RSVR EVI+STFDEPA
Sbjct: 342 VAQPKAGKTMMLQNIAQAIMYNHPDAHLIMLMIDERPEEVTEIARSVRAEVISSTFDEPA 401
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 402 VRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 461
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 462 PKRFFGAAR 470
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++F+I K + G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQ
Sbjct: 191 VSRARKQDVVFSILKAHARSGGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQ 250
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G +R PK GERYFALLK+ +N P++ K+ +L
Sbjct: 251 IRRFNLRTGDYITGRVRHPKEGERYFALLKVDDINGDPPEASKNKVL 297
>gi|336450899|ref|ZP_08621345.1| transcription termination factor Rho [Idiomarina sp. A28L]
gi|336282155|gb|EGN75393.1| transcription termination factor Rho [Idiomarina sp. A28L]
Length = 420
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/369 (69%), Positives = 312/369 (84%), Gaps = 2/369 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFGDG+LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 43 SKSGEDIFGDGALEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLKI++VN +KPE S+N+ LF+NLTPLH + L +ER S E+IT RI+
Sbjct: 103 PPKDGERYFALLKIREVNFDKPENSRNKILFENLTPLHANERLRMERGNGSTEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVT+M R
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECELMVLLIDERPEEVTDMHRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ M F I
Sbjct: 343 LHLNRKIAEKRVFPAIDYNRSGTRREELLTTPDELQKMWILRKIVHP--MGEIEAMEFLI 400
Query: 362 KRTIPVEKN 370
R + + N
Sbjct: 401 DRLVMTKTN 409
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVT+M R V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPECELMVLLIDERPEEVTDMHRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 89/113 (78%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ RLRKQ+++FAI K +K GE IFGDG+LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGLENMARLRKQDIIFAILKAHSKSGEDIFGDGALEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+GERYFALLKI++VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTVAGKIRPPKDGERYFALLKIREVNFDKPENSRNKIL 132
>gi|260774366|ref|ZP_05883280.1| transcription termination factor Rho [Vibrio metschnikovii CIP
69.14]
gi|260610493|gb|EEX35698.1| transcription termination factor Rho [Vibrio metschnikovii CIP
69.14]
Length = 409
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/352 (70%), Positives = 306/352 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 33 AKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 92
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 93 PPKEGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 152
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR
Sbjct: 153 DLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIANNHPECVLMVLLIDERPEEVTEMQRL 212
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 213 VKGEVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 272
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 273 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 332
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 333 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETD 384
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 167 VAPPKAGKTMLLQNIAQSIANNHPECVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 226
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 227 SRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 286
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 287 PKRFFGAAR 295
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 82/112 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 11 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 70
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN P + ++ IL
Sbjct: 71 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNHDKPDNARNKIL 122
>gi|3445333|emb|CAA11704.1| rho [Neisseria gonorrhoeae]
Length = 342
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/338 (72%), Positives = 301/338 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 5 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 64
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 65 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 124
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PK GK+++LQ+I H +T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 125 LISPIGKGQRALLVAPPKIGKTVMLQNIEHEVTANYPEVELIVLLIDERPEEVTEMSRSV 184
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 185 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 244
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 245 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 304
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W
Sbjct: 305 HLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMW 342
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/266 (43%), Positives = 150/266 (56%), Gaps = 83/266 (31%)
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
++ K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G
Sbjct: 1 RQMMKKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEG 60
Query: 468 EIRVPKNGERYFALLKIKKVNVASPK--------------------------------SG 495
+RVPK+ ERYFAL+++ +N P+ +G
Sbjct: 61 SVRVPKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTG 120
Query: 496 KSI------------------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531
++I +LQ+I H +T N+ E +IV+LIDERPEEVTEM
Sbjct: 121 RAIDLISPIGKGQRALLVAPPKIGKTVMLQNIEHEVTANYPEVELIVLLIDERPEEVTEM 180
Query: 532 QRSVRGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIP 564
RSVRGEV++STFDEPA L + +LARAYNTV+P
Sbjct: 181 SRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVP 240
Query: 565 ASGKVLTGGVDSNALQRPKRFFGAAR 590
ASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 241 ASGKILTGGVDANALHRPKRFFGAAR 266
>gi|345879566|ref|ZP_08831196.1| Sulfate transporter [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344223413|gb|EGV49886.1| Sulfate transporter [endosymbiont of Riftia pachyptila (vent Ph05)]
Length = 441
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/348 (72%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRF+L TGD + G+IR
Sbjct: 66 AKKGEDIYGDGVLEILPDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFSLRTGDTISGKIR 125
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ ++N +KPE +KN+ LF+N TPL + LE+ S E+IT R I
Sbjct: 126 PPKDGERYFALLKVSEINFDKPENAKNKILFENFTPLFANQKFTLEKGNGSTEDITARTI 185
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L APIGKGQRGL+V+ PK+GK+++LQ+IA +I NH E +IV+LIDERPEEVTEM RS
Sbjct: 186 ELCAPIGKGQRGLIVSPPKAGKTMMLQNIAQSIAYNHPECYLIVLLIDERPEEVTEMARS 245
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTVIP+SG
Sbjct: 246 VRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKMDVVILLDSITRLARAYNTVIPSSG 305
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME
Sbjct: 306 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNME 365
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL+RR+AEKR++PAIN+N+SGTRREELL+++ LQK+W+LRK+L+ +
Sbjct: 366 VHLDRRIAEKRIFPAININRSGTRREELLMKEGDLQKMWILRKILHPM 413
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +I NH E +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 200 VSPPKAGKTMMLQNIAQSIAYNHPECYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPA 259
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 260 TRHVQVAEMVIEKAKRLVEHKMDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 319
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 320 PKRFFGAAR 328
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 92/131 (70%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
NL + MP+ D+++ + R RKQ+L+FAI K K GE I+GDG LE+LPDG
Sbjct: 25 NLTELKKMPVPELADLARDMKIEGMARTRKQDLIFAILKAHAKKGEDIYGDGVLEILPDG 84
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRF+L TG G+IR PK+GERYFALLK+ ++N
Sbjct: 85 FGFLRSGDSSYLAGPDDIYVSPSQIRRFSLRTGDTISGKIRPPKDGERYFALLKVSEINF 144
Query: 490 ASPKSGKSIIL 500
P++ K+ IL
Sbjct: 145 DKPENAKNKIL 155
>gi|410634352|ref|ZP_11344989.1| transcription termination factor Rho [Glaciecola arctica BSs20135]
gi|410146208|dbj|GAC21856.1| transcription termination factor Rho [Glaciecola arctica BSs20135]
Length = 421
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/349 (71%), Positives = 306/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG+G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGNGVLEILQDGFGFLRSNDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI +VN ++PE ++N+ LF+NLTPLH + L++ER S E+IT R++
Sbjct: 103 PPKDTERYFALLKISEVNYDRPENARNKILFENLTPLHANERLIMERGNGSSEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDYNRSGTRREELLTTPDELQKMWILRKIVHEMS 391
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR VRGEVIASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++++ ++ R RKQ+++F+I K K GE IFG+G LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMKLENMARARKQDIIFSILKSHAKSGEDIFGNGVLEILQDGFGFLRSNDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+ ERYFALLKI +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDTERYFALLKISEVNYDRPENARNKIL 132
>gi|374621915|ref|ZP_09694444.1| transcription termination factor Rho [Ectothiorhodospira sp. PHS-1]
gi|373941045|gb|EHQ51590.1| transcription termination factor Rho [Ectothiorhodospira sp. PHS-1]
Length = 419
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLR S+Y+A DDIY+SPSQIRRF+L TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRGADSSYLAGPDDIYVSPSQIRRFSLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ K+N E PE +K++ LF+NLTPLH + + +ER S E+IT R+I
Sbjct: 103 PPKEGERYFALLKVDKINFEPPEAAKHKVLFENLTPLHASRRMRMERGNGSTEDITARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP GKGQRGL+V+ PK+GK+++LQ+IA +ITTNH E +IV+LIDERPEEVTEM R
Sbjct: 163 DIVAPFGKGQRGLIVSPPKAGKTLMLQNIAQSITTNHPECYLIVLLIDERPEEVTEMSRM 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV++STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VQGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKMDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARNIEEGGSLTI+ATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNIEEGGSLTILATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL+RR+AEKRVYPAIN+N+SGTRREELL ++LQK+W+LRK L+ +
Sbjct: 343 VHLDRRIAEKRVYPAININRSGTRREELLTDPEELQKLWILRKFLHPM 390
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +ITTNH E +IV+LIDERPEEVTEM R V+GEV++STFDEPA
Sbjct: 177 VSPPKAGKTLMLQNIAQSITTNHPECYLIVLLIDERPEEVTEMSRMVQGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKMDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 81/112 (72%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
+E+ + R RKQ+++FAI K K GE IFGDG LE+L DGFGFLR S+Y+A DDIY
Sbjct: 21 MELEGMARARKQDIIFAILKSHAKSGEDIFGDGVLEILQDGFGFLRGADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRF+L TG G+IR PK GERYFALLK+ K+N P++ K +L
Sbjct: 81 VSPSQIRRFSLRTGDTISGKIRPPKEGERYFALLKVDKINFEPPEAAKHKVL 132
>gi|256823806|ref|YP_003147769.1| transcription termination factor Rho [Kangiella koreensis DSM
16069]
gi|256797345|gb|ACV28001.1| transcription termination factor Rho [Kangiella koreensis DSM
16069]
Length = 418
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/348 (72%), Positives = 307/348 (88%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGGGVLEILPDGFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLRTGDTIFGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ ++N + PE S+N+ LF+NLTPLHP + + +ER S E+IT R+I
Sbjct: 103 PPKDGERYFALLKVAEINYDSPENSRNKLLFENLTPLHPDERIRMERGNGSTEDITARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+V+ PK+GK++ILQ+IA +IT+N+ E ++IV+LIDERPEEVTEMQRS
Sbjct: 163 DLAAPIGKGQRGLIVSPPKAGKTMILQNIAQSITSNNPECMLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R+++EKRV+PAI+ N+SGTR+E+LL ++LQK W+LRK+L+ +
Sbjct: 343 LHLSRKISEKRVFPAIDFNRSGTRKEDLLTSPEELQKNWILRKILHPM 390
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 146/283 (51%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSLEVLPDG---- 429
++ + R+RKQ+++F + K K GE IFG +GS PD
Sbjct: 23 LDHMARMRKQDIIFGLLKNHAKSGEDIFGGGVLEILPDGFGFLRSAEGSYLAGPDDIYVS 82
Query: 430 ---------------FGFLR--SQGSNYMA---SSDDIYLSPSQIRR---FNLHTGILWK 466
FG +R G Y A ++ Y SP R F T +
Sbjct: 83 PSQIRRFNLRTGDTIFGKIRPPKDGERYFALLKVAEINYDSPENSRNKLLFENLTPLHPD 142
Query: 467 GEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSEA 514
IR+ + NG ++ + + V+ PK+GK++ILQ+IA +IT+N+ E
Sbjct: 143 ERIRMERGNGSTEDITARVIDLAAPIGKGQRGLIVSPPKAGKTMILQNIAQSITSNNPEC 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
++IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 203 MLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVII 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|389780867|ref|ZP_10194379.1| transcription termination factor Rho [Rhodanobacter spathiphylli
B39]
gi|388435853|gb|EIL92745.1| transcription termination factor Rho [Rhodanobacter spathiphylli
B39]
Length = 611
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/345 (73%), Positives = 301/345 (87%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD++ G +R PK
Sbjct: 239 GGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQIRRFNLRTGDYITGRVRHPK 298
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFA+L++ +NG+ PE SKN+ LF+NLTPL P+K LER S E+ITGRI+DLI
Sbjct: 299 EGERYFAMLRVDDINGDPPEASKNKMLFENLTPLFPRKAFKLERGNGSSEDITGRILDLI 358
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQRGL+V+ PKSGK+++LQ+IA AI NH E+ +I++LIDERPEEVTE+ R+VR
Sbjct: 359 APIGKGQRGLIVSQPKSGKTMMLQNIAQAIQYNHPESHLIMLLIDERPEEVTEIARTVRA 418
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDVIILLDSITRLARAYNTVIP+SGKVL
Sbjct: 419 EVISSTFDEPAVRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVL 478
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL ETGS+MD+VIYEEFKGTGNMEVHL
Sbjct: 479 TGGVDANALQRPKRFFGAARNVEEGGSLTIIATALTETGSKMDEVIYEEFKGTGNMEVHL 538
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
RR++EKRVYPAI++N+SGTRRE+LLI+ D L KIW+LRKLL+ +
Sbjct: 539 SRRISEKRVYPAIDINRSGTRREDLLIEPDMLAKIWILRKLLHPM 583
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PKSGK+++LQ+IA AI NH E+ +I++LIDERPEEVTE+ R+VR EVI+STFDEPA
Sbjct: 370 VSQPKSGKTMMLQNIAQAIQYNHPESHLIMLLIDERPEEVTEIARTVRAEVISSTFDEPA 429
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 430 VRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALQR 489
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 490 PKRFFGAAR 498
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++F + K + G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQ
Sbjct: 219 VARARKQDVIFNVLKAHARSGGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQ 278
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G +R PK GERYFA+L++ +N P++ K+ +L
Sbjct: 279 IRRFNLRTGDYITGRVRHPKEGERYFAMLRVDDINGDPPEASKNKML 325
>gi|330447220|ref|ZP_08310870.1| transcription termination factor Rho [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328491411|dbj|GAA05367.1| transcription termination factor Rho [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 421
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/351 (71%), Positives = 307/351 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KP+ ++N+ LF+NLTPLH + +ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNYDKPDNARNKILFENLTPLHANSRMRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+HL R++AEKRV+PAI++N+SGTRREELL + D+LQK+W+LRK+++ ++ T
Sbjct: 343 LHLSRKIAEKRVFPAIDINRSGTRREELLAKADELQKMWILRKIVHPMSET 393
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK + ++A +++ LE ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKSQPISKLVALGESLGLE--NLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P + ++ IL
Sbjct: 124 PDNARNKIL 132
>gi|419824779|ref|ZP_14348289.1| transcription termination factor Rho [Vibrio cholerae CP1033(6)]
gi|408612433|gb|EKK85776.1| transcription termination factor Rho [Vibrio cholerae CP1033(6)]
Length = 419
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/351 (70%), Positives = 305/351 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH + +++ER S E+IT R++D
Sbjct: 104 PKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA P +GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGKGQRGLIVAPPNAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P SGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPVSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 344 HLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETD 394
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P +GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPNAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPVSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 82/112 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN P + ++ IL
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDRPDNARNKIL 132
>gi|410664811|ref|YP_006917182.1| transcription termination factor Rho [Simiduia agarivorans SA1 =
DSM 21679]
gi|409027168|gb|AFU99452.1| transcription termination factor Rho [Simiduia agarivorans SA1 =
DSM 21679]
Length = 419
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/348 (72%), Positives = 308/348 (88%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS +++A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGDGVLEILQDGFGFLRSADGSFLAGPDDIYVSPSQIRRFNLRTGDSISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +N +KPE S+N+ LF+NLTPL P + L+LE S E++TGRII
Sbjct: 103 PPKEGERYFALLKVNDINFDKPENSRNKILFENLTPLFPNQRLVLEAGNGSTEDLTGRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DLIAPIGKGQRGL+VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLIAPIGKGQRGLIVAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGN E
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNIEEGGSLTIVATALVDTGSKMDEVIYEEFKGTGNQE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL+R++AEKRVYPAIN+ +SGTRRE+LL+++D++Q++W+LRKLL+ +
Sbjct: 343 LHLDRKIAEKRVYPAINIRRSGTRREDLLMKEDEMQRVWILRKLLHDM 390
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 82/113 (72%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R RKQ+++F I K+ K GE I+GDG LE+L DGFGFLRS +++A DDI
Sbjct: 20 EMGLENLARSRKQDIIFNILKRHAKSGEDIYGDGVLEILQDGFGFLRSADGSFLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDSISGKIRPPKEGERYFALLKVNDINFDKPENSRNKIL 132
>gi|345864534|ref|ZP_08816734.1| transcription termination factor Rho [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124393|gb|EGW54273.1| transcription termination factor Rho [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 418
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/348 (72%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRF+L TGD + G+IR
Sbjct: 43 AKKGEDIYGDGVLEILPDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFSLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ ++N +KPE +KN+ LF+N TPL + LE+ S E+IT R I
Sbjct: 103 PPKDGERYFALLKVSEINFDKPENAKNKILFENFTPLFANQKFTLEKGNGSTEDITARTI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L APIGKGQRGL+V+ PK+GK+++LQ+IA +I NH E +IV+LIDERPEEVTEM RS
Sbjct: 163 ELCAPIGKGQRGLIVSPPKAGKTMMLQNIAQSIAYNHPECYLIVLLIDERPEEVTEMARS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKMDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL+RR+AEKR++PAIN+N+SGTRREELL+++ LQK+W+LRK+L+ +
Sbjct: 343 VHLDRRIAEKRIFPAININRSGTRREELLMKEGDLQKMWILRKILHPM 390
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +I NH E +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 177 VSPPKAGKTMMLQNIAQSIAYNHPECYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKMDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 92/131 (70%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
NL + MP+ D+++ + R RKQ+L+FAI K K GE I+GDG LE+LPDG
Sbjct: 2 NLTELKKMPVPELADLARDMKIEGMARTRKQDLIFAILKAHAKKGEDIYGDGVLEILPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRF+L TG G+IR PK+GERYFALLK+ ++N
Sbjct: 62 FGFLRSGDSSYLAGPDDIYVSPSQIRRFSLRTGDTISGKIRPPKDGERYFALLKVSEINF 121
Query: 490 ASPKSGKSIIL 500
P++ K+ IL
Sbjct: 122 DKPENAKNKIL 132
>gi|121605096|ref|YP_982425.1| transcription termination factor Rho [Polaromonas naphthalenivorans
CJ2]
gi|120594065|gb|ABM37504.1| transcription termination factor Rho [Polaromonas naphthalenivorans
CJ2]
Length = 420
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/349 (71%), Positives = 306/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
++K GE I DG LEVLPDGFGFLR+ S+Y AS+DDIY+SPSQIRRFNLHTGD +EGE+
Sbjct: 42 RSKTGETIVADGVLEVLPDGFGFLRAPDSSYTASTDDIYISPSQIRRFNLHTGDMIEGEV 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL K+ K+N PE +K++ +F+NLTPL P++ LER+I+++EN+T RI
Sbjct: 102 RTPKDGERYFALNKLDKINDGAPEDNKHKVMFENLTPLFPREQFKLERDIKAEENLTSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID+IAPIGKGQR LLVA PKSGK++++Q+IAHAI N+ E +M+V+L+DERPEEVTEMQR
Sbjct: 162 IDIIAPIGKGQRALLVAPPKSGKTVMMQNIAHAIVANYPEVVMMVLLVDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVR EVI+STFDEPA RHV VAEMV+E+AKRLVE+ KDV+ILLDSITRLARAYN V+P+S
Sbjct: 222 SVRAEVISSTFDEPAARHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+NALQRPKRFFGAAR IEEGGSLTII TALI+TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLSGGVDANALQRPKRFFGAARKIEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNC 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RRL EKRV+PAINLN+SGTR+EELL+ + LQK +LR+ +Y++
Sbjct: 342 EIHLDRRLYEKRVFPAINLNRSGTRKEELLLAPEILQKSRILRQFMYNM 390
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 121/201 (60%), Gaps = 18/201 (8%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + VL + + LE+ +V R+RKQELMFAI KK++K GE I DG LEVLPDG
Sbjct: 4 NELKALHVSEVLKQAEA--LEIENVGRMRKQELMFAIIKKRSKTGETIVADGVLEVLPDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLR+ S+Y AS+DDIY+SPSQIRRFNLHTG + +GE+R PK+GERYFAL K+ K+N
Sbjct: 62 FGFLRAPDSSYTASTDDIYISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKIND 121
Query: 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL 549
+P+ K +M L P E +++R ++ E ++ +
Sbjct: 122 GAPEDNK----------------HKVMFENLTPLFPREQFKLERDIKAEENLTSRIIDII 165
Query: 550 SVMCKLARAYNTVIPASGKVL 570
+ + K RA P SGK +
Sbjct: 166 APIGKGQRALLVAPPKSGKTV 186
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 93/130 (71%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++++Q+IAHAI N+ E +M+V+L+DERPEEVTEMQRSVR EVI+STFDEPA
Sbjct: 177 VAPPKSGKTVMMQNIAHAIVANYPEVVMMVLLVDERPEEVTEMQRSVRAEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+NALQR
Sbjct: 237 ARHVHVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLSGGVDANALQR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
>gi|90023296|ref|YP_529123.1| transcription termination factor Rho [Saccharophagus degradans
2-40]
gi|89952896|gb|ABD82911.1| transcription termination factor Rho [Saccharophagus degradans
2-40]
Length = 419
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/351 (71%), Positives = 312/351 (88%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+GDG LE+L DGFGFLRS G++Y+A DDIY+SPSQIRRFNL TGD + G+IR PK
Sbjct: 46 GEDIYGDGVLEILQDGFGFLRSAGASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N +KPE S+N+ LF+NLTPL P++ L LE S E++TGRIIDL+
Sbjct: 106 EGERYFALLKVNEINFDKPENSRNKILFENLTPLFPQERLELETGNGSTEDLTGRIIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIGKGQRGL+VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRSVRG
Sbjct: 166 SPIGKGQRGLIVAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEP RHVQVAEMV+E+AKRLVE KKDVIILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEPPSRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSL+I+ATALI+TGS+MD+VIYEEFKGTGNME+HL
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLSIVATALIDTGSKMDEVIYEEFKGTGNMELHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFT 355
+R++AE+RVYPAIN+ +SGTRRE+LL+++++L ++W+LRKLL+ + + T
Sbjct: 346 DRKIAERRVYPAINIRRSGTRREDLLMKEEELSRVWILRKLLHDMEDVAAT 396
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL+R
Sbjct: 237 SRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + S+ R RKQ+++F I K+ + GE I+GDG LE+L DGFGFLRS G++Y+A DDI
Sbjct: 20 EMGMESLARSRKQDVIFNILKRHARSGEDIYGDGVLEILQDGFGFLRSAGASYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ ++N P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEINFDKPENSRNKIL 132
>gi|54310593|ref|YP_131613.1| transcription termination factor Rho [Photobacterium profundum SS9]
gi|46915036|emb|CAG21811.1| putative transcription termination factor [Photobacterium profundum
SS9]
Length = 455
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/350 (71%), Positives = 305/350 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 79 KGGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRP 138
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +ER S E+IT R++D
Sbjct: 139 PKDGERYFALLKVNAVNYDKPDNARNKILFENLTPLHANDRMRMERGNGSTEDITARVLD 198
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+I+LQ+IA +I NH E +++V+LIDERPEEVTEMQR V
Sbjct: 199 LASPIGKGQRGLIVAPPKAGKTILLQNIAQSIAHNHPECVLMVLLIDERPEEVTEMQRLV 258
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 259 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 318
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 319 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 378
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 379 HLSRKIAEKRVFPAIDFNRSGTRREELLAKPDELQKMWILRKIVHPMGET 428
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +I NH E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 212 VAPPKAGKTILLQNIAQSIAHNHPECVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 271
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 272 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 331
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 332 PKRFFGAAR 340
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 98/137 (71%), Gaps = 4/137 (2%)
Query: 366 PVEKNL--LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSL 423
P NL LK +P ++A ++++ LE ++ RLRKQ+++F+I K+ K GE IFGDG L
Sbjct: 33 PTTMNLTELKSQPIPKLVALSESLGLE--NLARLRKQDIIFSILKQHAKGGEDIFGDGVL 90
Query: 424 EVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLK 483
E+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK
Sbjct: 91 EILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKDGERYFALLK 150
Query: 484 IKKVNVASPKSGKSIIL 500
+ VN P + ++ IL
Sbjct: 151 VNAVNYDKPDNARNKIL 167
>gi|89073867|ref|ZP_01160374.1| transcription termination factor Rho [Photobacterium sp. SKA34]
gi|90581474|ref|ZP_01237268.1| transcription termination factor Rho [Photobacterium angustum S14]
gi|89050402|gb|EAR55903.1| transcription termination factor Rho [Photobacterium sp. SKA34]
gi|90437335|gb|EAS62532.1| transcription termination factor Rho [Photobacterium angustum S14]
Length = 421
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/351 (71%), Positives = 307/351 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KP+ ++N+ LF+NLTPLH + +ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNYDKPDNARNKILFENLTPLHANSRMRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+HL R++AEKRV+PAI++N+SGTRREELL + D+LQK+W+LRK+++ ++ T
Sbjct: 343 LHLSRKIAEKRVFPAIDINRSGTRREELLAKADELQKMWILRKIVHPMSET 393
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 85/112 (75%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ +VN P + ++ IL
Sbjct: 81 VSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEVNYDKPDNARNKIL 132
>gi|119946796|ref|YP_944476.1| transcription termination factor Rho [Psychromonas ingrahamii 37]
gi|119865400|gb|ABM04877.1| transcription termination factor Rho [Psychromonas ingrahamii 37]
Length = 422
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/353 (71%), Positives = 308/353 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V+G+IR
Sbjct: 44 KSGEDIFGAGVLEILQDGFGFLRSSESSYLAGPDDIYISPSQIRRFNLRTGDSVDGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLKI +VN KPE S+N+ LF+NLTP+HP + LE S E+IT RI+D
Sbjct: 104 PKDGERYFALLKIIEVNFNKPENSRNKILFENLTPIHPDERFRLENGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIGKGQRGL+VA PK+GK+++LQ+IA +++ N+ EA++IV+LIDERPEEVTEM R V
Sbjct: 164 LVSPIGKGQRGLIVAPPKAGKTMLLQNIAQSLSINYPEAVLIVLLIDERPEEVTEMSRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 RGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATALI+TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNVEEGGSLTILATALIDTGSKMDEVIYEEFKGTGNSEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFT 355
HL R+LAEKRVYPAI++ +SGTRREELL + D+LQ++W+LRK+++ + T T
Sbjct: 344 HLNRKLAEKRVYPAIDITRSGTRREELLTKSDELQRMWILRKIVHPMGETGAT 396
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +++ N+ EA++IV+LIDERPEEVTEM R VRGEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSLSINYPEAVLIVLLIDERPEEVTEMSRLVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE ++ RLRKQ+++FAI K K GE IFG G LE+L DGFG
Sbjct: 6 LKDTPVSNLVTLGESMGLE--NLARLRKQDIIFAILKAHAKSGEDIFGAGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLKI +VN
Sbjct: 64 FLRSSESSYLAGPDDIYISPSQIRRFNLRTGDSVDGKIRPPKDGERYFALLKIIEVNFNK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRNKIL 132
>gi|406939264|gb|EKD72318.1| hypothetical protein ACD_45C00703G0003 [uncultured bacterium]
Length = 418
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/369 (69%), Positives = 307/369 (83%), Gaps = 2/369 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKRGEDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +N + PE +K++ LF+NLTPL + L +E S E+IT RII
Sbjct: 103 PPKEGERYFALLKVDHINFDAPENAKSKVLFENLTPLFANERLKMECGNGSTEDITARII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+V+ PK+GK+++LQ+IAH+I NH E ++V+LIDERPEEVTEM RS
Sbjct: 163 DLASPIGKGQRGLIVSPPKAGKTMMLQNIAHSIAQNHPECYLMVLLIDERPEEVTEMTRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+PASG
Sbjct: 223 VRGEVIASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL+ETGS+MDDVIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL+RR++E+R+YP+IN+NKSGTRREELL + D++QK+W+LRKLL M F I
Sbjct: 343 IHLDRRISERRIYPSININKSGTRREELLTKPDEMQKMWILRKLLQP--MDELAAIEFII 400
Query: 362 KRTIPVEKN 370
R + N
Sbjct: 401 DRLKATKTN 409
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IAH+I NH E ++V+LIDERPEEVTEM RSVRGEVIASTFDEPA
Sbjct: 177 VSPPKAGKTMMLQNIAHSIAQNHPECYLMVLLIDERPEEVTEMTRSVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 NRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FAI K K GE I+GDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFAILKAHAKRGEDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N +P++ KS +L
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVDHINFDAPENAKSKVL 132
>gi|339477755|ref|YP_004706575.1| transcription termination factor Rho [Candidatus Moranella endobia
PCIT]
gi|338172306|gb|AEI74707.1| transcription termination factor Rho [Candidatus Moranella endobia
PCIT]
Length = 419
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/368 (69%), Positives = 311/368 (84%), Gaps = 2/368 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ KVN EKPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKDGERYFALLKVNKVNYEKPENARNKILFENLTPLHTNSRLCMERGNGSTEDLTTRVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+I+LQ+IA +I N+S+ +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTILLQNIAQSIAYNYSDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 NGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVMILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ M+ F I
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTKEELQKMWILRKIIHP--MSEIDAMEFLIN 401
Query: 363 RTIPVEKN 370
+ + + N
Sbjct: 402 KLVMTKTN 409
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +I N+S+ +++V+LIDERPEEVTEMQR V GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAQSIAYNYSDCVLMVLLIDERPEEVTEMQRLVNGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVMILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 89/123 (72%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ RLRKQ+++F I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NIGLENLARLRKQDIIFTILKQHAKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAI 507
Y+SPSQIRRFNL TG G+IR PK+GERYFALLK+ KVN P++ ++ IL +
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVNKVNYEKPENARNKILFENLTPL 139
Query: 508 TTN 510
TN
Sbjct: 140 HTN 142
>gi|3421262|emb|CAA11669.1| rho [Neisseria flavescens]
gi|3421294|emb|CAA11651.1| rho [Neisseria perflava]
Length = 342
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 241/329 (73%), Positives = 300/329 (91%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RVPK+ ERYFA
Sbjct: 14 GTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFA 73
Query: 72 LLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQ 131
L+++ +NG++PE+ K++ LF+NLTPL P + LER+I+++EN+TGR IDL++PIGKGQ
Sbjct: 74 LVRLDTINGDQPEVCKHKILFENLTPLFPTEQFKLERDIKAEENLTGRAIDLVSPIGKGQ 133
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
R LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STF
Sbjct: 134 RALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTF 193
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK+LTGGVD+N
Sbjct: 194 DEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDAN 253
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
AL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEK
Sbjct: 254 ALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEK 313
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIW 340
R++PAI++NKSGTRREELL+ +D+LQ++W
Sbjct: 314 RLFPAISINKSGTRREELLVPNDQLQRMW 342
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 146/253 (57%), Gaps = 83/253 (32%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFA 480
G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFA
Sbjct: 14 GTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFA 73
Query: 481 LLKIKKVNVASPK--------------------------------SGKSI---------- 498
L+++ +N P+ +G++I
Sbjct: 74 LVRLDTINGDQPEVCKHKILFENLTPLFPTEQFKLERDIKAEENLTGRAIDLVSPIGKGQ 133
Query: 499 --------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STF
Sbjct: 134 RALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTF 193
Query: 545 DEPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DEPA L + +LARAYNTV+P SGK+LTGGVD+N
Sbjct: 194 DEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDAN 253
Query: 578 ALQRPKRFFGAAR 590
AL RPKRFFGAAR
Sbjct: 254 ALHRPKRFFGAAR 266
>gi|152977725|ref|YP_001343354.1| transcription termination factor Rho [Actinobacillus succinogenes
130Z]
gi|150839448|gb|ABR73419.1| transcription termination factor Rho [Actinobacillus succinogenes
130Z]
Length = 420
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/345 (72%), Positives = 303/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD VEG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKVEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE+S+++ LF+NLTPLH L +ER SKE++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHANSRLRMERGNGSKEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTVLLQNIAQSITANYPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VRGEVIASTFDEPAARHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 147/284 (51%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL-----------------PDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+L PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKVEGKIRPPKEGERYFALLKVDQVNDDRPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG + +I + + VA PK+GK+++LQ+IA +IT N+ E
Sbjct: 143 NSRLRMERGNGSKEDLTARILDLASPIGKGQRGLIVAPPKAGKTVLLQNIAQSITANYPE 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 203 CELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPAARHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|312881439|ref|ZP_07741234.1| transcription termination factor Rho [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370921|gb|EFP98378.1| transcription termination factor Rho [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 419
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKNDELQKMWILRKIVHPM 390
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|104784235|ref|YP_610733.1| transcription termination factor Rho [Pseudomonas entomophila L48]
gi|95113222|emb|CAK17950.1| transcription termination factor [Pseudomonas entomophila L48]
Length = 419
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/347 (73%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P K L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+NKSGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININKSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|261250044|ref|ZP_05942621.1| transcription termination factor Rho [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|260939548|gb|EEX95533.1| transcription termination factor Rho [Vibrio orientalis CIP 102891
= ATCC 33934]
Length = 427
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 51 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 111 PPKDGERYFALLKVNTVNADKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 171 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 231 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 291 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++++LQK+W+LRK+++ +
Sbjct: 351 IHLNRKIAEKRVFPAIDFNRSGTRREELLTKNEELQKMWILRKIVHPM 398
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 185 VAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 244
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 245 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 304
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 305 PKRFFGAAR 313
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 83/112 (74%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 29 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 88
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN P + ++ IL
Sbjct: 89 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNADKPDNARNKIL 140
>gi|389810452|ref|ZP_10205813.1| transcription termination factor Rho [Rhodanobacter thiooxydans
LCS2]
gi|388440915|gb|EIL97240.1| transcription termination factor Rho [Rhodanobacter thiooxydans
LCS2]
Length = 599
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/345 (72%), Positives = 302/345 (87%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD++ G +R PK
Sbjct: 227 GGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQIRRFNLRTGDYITGRVRHPK 286
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFA+L++ +NG+ PE SKN+ LF+NLTPL P+K LER S E+ITGRI+DLI
Sbjct: 287 EGERYFAMLRVDDINGDPPEASKNKMLFENLTPLFPRKAYKLERGNGSSEDITGRILDLI 346
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQRGL+V+ PKSGK+++LQ++A AIT NH EA +I++LIDERPEEVTE+ R+VR
Sbjct: 347 APIGKGQRGLIVSQPKSGKTMMLQNVAQAITYNHPEAHLIMLLIDERPEEVTEIARTVRA 406
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+E+AKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 407 EVISSTFDEPAVRHVQVAEMVIERAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVL 466
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL ETGS+MD+VIYEEFKGTGNMEVHL
Sbjct: 467 TGGVDANALQRPKRFFGAARNVEEGGSLTIIATALTETGSKMDEVIYEEFKGTGNMEVHL 526
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
RR++EKRVYPAI++N+SGTRRE+LLI+ D L KIW+LRKLL+ +
Sbjct: 527 SRRISEKRVYPAIDINRSGTRREDLLIEPDMLAKIWILRKLLHPM 571
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PKSGK+++LQ++A AIT NH EA +I++LIDERPEEVTE+ R+VR EVI+STFDEPA
Sbjct: 358 VSQPKSGKTMMLQNVAQAITYNHPEAHLIMLLIDERPEEVTEIARTVRAEVISSTFDEPA 417
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 418 VRHVQVAEMVIERAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 477
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 478 PKRFFGAAR 486
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++F + K + G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQ
Sbjct: 207 VARARKQDVIFNVLKAHARSGGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQ 266
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G +R PK GERYFA+L++ +N P++ K+ +L
Sbjct: 267 IRRFNLRTGDYITGRVRHPKEGERYFAMLRVDDINGDPPEASKNKML 313
>gi|254508554|ref|ZP_05120671.1| transcription termination factor Rho [Vibrio parahaemolyticus 16]
gi|323495929|ref|ZP_08100996.1| transcription termination factor Rho [Vibrio sinaloensis DSM 21326]
gi|219548496|gb|EED25504.1| transcription termination factor Rho [Vibrio parahaemolyticus 16]
gi|323319012|gb|EGA71956.1| transcription termination factor Rho [Vibrio sinaloensis DSM 21326]
Length = 419
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++D+LQK+W+LRK+++ +
Sbjct: 343 IHLNRKIAEKRVFPAIDFNRSGTRREELLTKNDELQKMWILRKIVHPM 390
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|192362115|ref|YP_001980885.1| transcription termination factor Rho [Cellvibrio japonicus Ueda107]
gi|190688280|gb|ACE85958.1| transcription termination factor Rho [Cellvibrio japonicus Ueda107]
Length = 419
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 256/362 (70%), Positives = 312/362 (86%), Gaps = 2/362 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIYGDGVLEILVDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +N +KPE S+N+ LF+NLTPL P + +LLE S E++TGRII
Sbjct: 103 PPKEGERYFALLKVNDINFDKPENSRNKILFENLTPLFPNERILLEAGNGSTEDLTGRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DLIAPIGKGQRGL+VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLIAPIGKGQRGLIVAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATAL++TGS+MD+VIYEEFKGTGN+E
Sbjct: 283 KVLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALVDTGSKMDEVIYEEFKGTGNLE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL+R+LAEKRVYPAIN+ +SGTRRE+LL+++D+ Q++W+LR+LL M + F I
Sbjct: 343 LHLDRKLAEKRVYPAINIRRSGTRREDLLMKEDEQQRVWILRRLLND--MEDIAATEFLI 400
Query: 362 KR 363
+
Sbjct: 401 DK 402
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL+R
Sbjct: 237 ARHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F I K+ K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENIARSRKQDIIFNILKRHAKGGEDIYGDGVLEILVDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNDINFDKPENSRNKIL 132
>gi|3421326|emb|CAA11649.1| rho [Neisseria subflava]
Length = 342
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 240/329 (72%), Positives = 300/329 (91%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RVPK+ ERYFA
Sbjct: 14 GTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFA 73
Query: 72 LLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQ 131
L+++ +NG++PE+ K++ LF+NLTPL P + LER+I+++EN+TGR IDL++PIGKGQ
Sbjct: 74 LVRLDTINGDQPEVCKHKILFENLTPLFPTEQFKLERDIKAEENLTGRAIDLVSPIGKGQ 133
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
R LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STF
Sbjct: 134 RALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTF 193
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK+LTGG+D+N
Sbjct: 194 DEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGIDAN 253
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
AL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEK
Sbjct: 254 ALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEK 313
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIW 340
R++PAI++NKSGTRREELL+ +D+LQ++W
Sbjct: 314 RLFPAISINKSGTRREELLVPNDQLQRMW 342
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 146/253 (57%), Gaps = 83/253 (32%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFA 480
G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFA
Sbjct: 14 GTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFA 73
Query: 481 LLKIKKVNVASPK--------------------------------SGKSI---------- 498
L+++ +N P+ +G++I
Sbjct: 74 LVRLDTINGDQPEVCKHKILFENLTPLFPTEQFKLERDIKAEENLTGRAIDLVSPIGKGQ 133
Query: 499 --------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STF
Sbjct: 134 RALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTF 193
Query: 545 DEPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DEPA L + +LARAYNTV+P SGK+LTGG+D+N
Sbjct: 194 DEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGIDAN 253
Query: 578 ALQRPKRFFGAAR 590
AL RPKRFFGAAR
Sbjct: 254 ALHRPKRFFGAAR 266
>gi|441505881|ref|ZP_20987861.1| Transcription termination factor Rho [Photobacterium sp. AK15]
gi|441426611|gb|ELR64093.1| Transcription termination factor Rho [Photobacterium sp. AK15]
Length = 421
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/351 (70%), Positives = 306/351 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KP+ ++N+ LF+NLTPLH + +ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNHDKPDNARNKILFENLTPLHANSRMRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++ T
Sbjct: 343 LHLSRKIAEKRVFPAIDFNRSGTRREELLAKADELQKMWILRKIVHPMSET 393
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 180/302 (59%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A +++ LE ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNQPISKLVALGESLGLE--NLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--- 488
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEVNHDK 123
Query: 489 ----------------------------------------VASP-------------KSG 495
+ASP K+G
Sbjct: 124 PDNARNKILFENLTPLHANSRMRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 184 KTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|410617850|ref|ZP_11328814.1| transcription termination factor Rho [Glaciecola polaris LMG 21857]
gi|410162580|dbj|GAC32952.1| transcription termination factor Rho [Glaciecola polaris LMG 21857]
Length = 421
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 306/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEDIFGDGVLEILQDGFGFLRSNDASYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLKI +VN ++PE ++N+ LF+NLTPLH + L++ER S E+IT R++D
Sbjct: 104 PKDSERYFALLKISEVNFDRPENARNKILFENLTPLHANERLIMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 QGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 344 HLNRKIAEKRVFPAIDYNRSGTRREELLTTQDELQKMWILRKIVHEMS 391
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 82/110 (74%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F+I K K GE IFGDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 LENMARARKQDIIFSILKTHAKGGEDIFGDGVLEILQDGFGFLRSNDASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK+ ERYFALLKI +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKDSERYFALLKISEVNFDRPENARNKIL 132
>gi|149191363|ref|ZP_01869615.1| transcription termination factor Rho [Vibrio shilonii AK1]
gi|148834780|gb|EDL51765.1| transcription termination factor Rho [Vibrio shilonii AK1]
Length = 419
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/352 (70%), Positives = 305/352 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + + +ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMTMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWILRKIVHPMGETD 394
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMTMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|406979041|gb|EKE00897.1| hypothetical protein ACD_21C00256G0009 [uncultured bacterium]
Length = 480
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 245/342 (71%), Positives = 304/342 (88%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFGDG LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRF+L TGD + G+IR PK+ E
Sbjct: 109 IFGDGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFSLRTGDTIAGKIRPPKDSE 168
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALL++ K+N + PE ++ LF+NLTPL + +++ER I S E+IT R+IDL+API
Sbjct: 169 RYFALLQVDKINFDSPESITHKILFENLTPLFADERIVMERGIGSSEDITARVIDLVAPI 228
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+V+ PK+GK+++LQ IAH+IT NH E +IV+LIDERPEEVT+M RSV+GEV+
Sbjct: 229 GKGQRGLIVSPPKAGKTMMLQQIAHSITANHPECHLIVLLIDERPEEVTDMSRSVKGEVL 288
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RH+QVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV PASGKVLTGG
Sbjct: 289 ASTFDEPATRHIQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVSPASGKVLTGG 348
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD++ALQRPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VIYEEFKGTGN+E+HLERR
Sbjct: 349 VDASALQRPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNLEIHLERR 408
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+AEKRV+PAI++N+SGTRREEL++ D+LQK+W+LRK+L+ +
Sbjct: 409 IAEKRVFPAIDINRSGTRREELIVPADELQKMWILRKILHPM 450
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ IAH+IT NH E +IV+LIDERPEEVT+M RSV+GEV+ASTFDEPA
Sbjct: 237 VSPPKAGKTMMLQQIAHSITANHPECHLIVLLIDERPEEVTDMSRSVKGEVLASTFDEPA 296
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASGKVLTGGVD++ALQR
Sbjct: 297 TRHIQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVSPASGKVLTGGVDASALQR 356
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 357 PKRFFGAAR 365
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 82/107 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L+V ++ R+RK +++FAI K + + IFGDG LE+LPDGFGFLRS S+Y+A DDI
Sbjct: 80 ELDVENITRMRKSDMIFAILKAHAQNNKDIFGDGVLEILPDGFGFLRSADSSYLAGPDDI 139
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+SPSQIRRF+L TG G+IR PK+ ERYFALL++ K+N SP+S
Sbjct: 140 YVSPSQIRRFSLRTGDTIAGKIRPPKDSERYFALLQVDKINFDSPES 186
>gi|32491052|ref|NP_871306.1| transcription termination factor Rho [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166259|dbj|BAC24449.1| rho [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 419
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 305/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
KIGE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KIGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVDEVNYDKPESSRNKILFENLTPLHANSRLKMERGNGSTEDLTTRVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG+GQRGL+VA PK+GK+++LQ+IA +I+ NH + ++IV+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGRGQRGLIVAPPKAGKTMLLQNIAQSISYNHPDCVLIVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEP+ RHVQV+EMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPSSRHVQVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LR++++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTSSEELQKMWILRRIIHPMN 391
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 171/286 (59%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+ K+ KIGE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSTLKQHAKIGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL-------------------------- 481
Y+SPSQIRRFNL TG G+IR PK GERYFAL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVDEVNYDKPESSRNKILFENLTPL 139
Query: 482 -----LKIKKVN-------------------------VASPKSGKSIILQHIAHAITTNH 511
LK+++ N VA PK+GK+++LQ+IA +I+ NH
Sbjct: 140 HANSRLKMERGNGSTEDLTTRVLDLAAPIGRGQRGLIVAPPKAGKTMLLQNIAQSISYNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
+ ++IV+LIDERPEEVTEMQR V+GEVIASTFDEP+
Sbjct: 200 PDCVLIVLLIDERPEEVTEMQRLVKGEVIASTFDEPSSRHVQVSEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 260 VIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAAR 305
>gi|109900521|ref|YP_663776.1| transcription termination factor Rho [Pseudoalteromonas atlantica
T6c]
gi|109702802|gb|ABG42722.1| transcription termination factor Rho [Pseudoalteromonas atlantica
T6c]
Length = 433
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 306/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 56 KSGEDIFGDGVLEILQDGFGFLRSNDASYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 115
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLKI +VN ++PE ++N+ LF+NLTPLH + L++ER S E+IT R++D
Sbjct: 116 PKDSERYFALLKISEVNFDRPENARNKILFENLTPLHANERLVMERGNGSTEDITARVLD 175
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V
Sbjct: 176 LASPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLV 235
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 236 QGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 295
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 296 VLTGGVDANALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 355
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 356 HLNRKIAEKRVFPAIDYNRSGTRREELLTTPDELQKMWILRKIVHEMS 403
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 189 VAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLVQGEVVASTFDEPA 248
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 249 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 308
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 309 PKRFFGAAR 317
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 94/137 (68%), Gaps = 4/137 (2%)
Query: 366 PVEKNL--LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSL 423
P NL LK+ + ++ + + LE ++ R RKQ+++F+I K K GE IFGDG L
Sbjct: 10 PTNMNLTELKNKPISELVGLAEKMGLE--NMARARKQDIIFSILKTHAKSGEDIFGDGVL 67
Query: 424 EVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLK 483
E+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TG G+IR PK+ ERYFALLK
Sbjct: 68 EILQDGFGFLRSNDASYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDSERYFALLK 127
Query: 484 IKKVNVASPKSGKSIIL 500
I +VN P++ ++ IL
Sbjct: 128 ISEVNFDRPENARNKIL 144
>gi|343506830|ref|ZP_08744294.1| transcription termination factor Rho [Vibrio ichthyoenteri ATCC
700023]
gi|343510103|ref|ZP_08747359.1| transcription termination factor Rho [Vibrio scophthalmi LMG 19158]
gi|343516203|ref|ZP_08753244.1| transcription termination factor Rho [Vibrio sp. N418]
gi|342796623|gb|EGU32296.1| transcription termination factor Rho [Vibrio sp. N418]
gi|342801364|gb|EGU36836.1| transcription termination factor Rho [Vibrio ichthyoenteri ATCC
700023]
gi|342803242|gb|EGU38617.1| transcription termination factor Rho [Vibrio scophthalmi LMG 19158]
Length = 419
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/352 (70%), Positives = 306/352 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER + E+IT RI+
Sbjct: 103 PPKDGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMVMERGNGATEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETD 394
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNHDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGATEDITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|167856500|ref|ZP_02479214.1| transcription termination factor Rho [Haemophilus parasuis 29755]
gi|167852380|gb|EDS23680.1| transcription termination factor Rho [Haemophilus parasuis 29755]
Length = 420
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/345 (72%), Positives = 303/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER SKE++T RI+
Sbjct: 104 PPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSKEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFNRSGTRKEDLLTSPDELQKMWILRKIL 388
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/284 (41%), Positives = 153/284 (53%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRS--------------- 435
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS
Sbjct: 24 LENLARLRKQDIIFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 436 -----------------------QGSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
+G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG + +I + + VA PK+GK+++LQ+IA +IT N+ E
Sbjct: 143 NSRLRMERGNGSKEDLTARILDLASPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNYPE 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 CELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|220933544|ref|YP_002512443.1| transcription termination factor Rho [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|219994854|gb|ACL71456.1| transcription termination factor Rho [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 419
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRF+L TGD + G+IR
Sbjct: 43 AKNGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFSLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ ++N E PE +KN+ LF+NLTPLH + + +ER S E+IT R+I
Sbjct: 103 PPKEGERYFALLKVDQINFEAPENAKNKVLFENLTPLHASERMRMERGNGSTEDITARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP GKGQRGL+V+ PK+GK+++LQ+IA +I TN+ + +IV+LIDERPEEVTEM R
Sbjct: 163 DIVAPFGKGQRGLIVSPPKAGKTLMLQNIAQSIATNYPDCYLIVLLIDERPEEVTEMARM 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VQGEVISSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARNIEEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL+RR+AEKR YPAIN+N+SGTRREELL D+LQK+W+LRK L+S+
Sbjct: 343 IHLDRRIAEKRTYPAININRSGTRREELLTDPDELQKLWILRKFLHSM 390
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +I TN+ + +IV+LIDERPEEVTEM R V+GEVI+STFDEPA
Sbjct: 177 VSPPKAGKTLMLQNIAQSIATNYPDCYLIVLLIDERPEEVTEMARMVQGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 84/112 (75%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
+++ + R RKQ+++FA+ K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 MKIEGMARARKQDIIFAMLKAHAKNGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRF+L TG G+IR PK GERYFALLK+ ++N +P++ K+ +L
Sbjct: 81 VSPSQIRRFSLRTGDTISGKIRPPKEGERYFALLKVDQINFEAPENAKNKVL 132
>gi|153839109|ref|ZP_01991776.1| transcription termination factor Rho [Vibrio parahaemolyticus
AQ3810]
gi|149747405|gb|EDM58369.1| transcription termination factor Rho [Vibrio parahaemolyticus
AQ3810]
Length = 427
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 305/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 52 KGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRP 111
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++D
Sbjct: 112 PKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLD 171
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V
Sbjct: 172 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLV 231
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 232 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 291
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 292 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 351
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 352 HLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPM 398
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 29 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 88
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 89 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 148
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 149 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 208
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 209 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 268
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 269 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 313
>gi|3421292|emb|CAA11650.1| rho [Neisseria mucosa]
Length = 342
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 241/329 (73%), Positives = 299/329 (90%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RVPK+ ERYFA
Sbjct: 14 GTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFA 73
Query: 72 LLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQ 131
L+++ +NG+ PE+ K++ LF+NLTPL P + LER+I+++EN+TGR IDL++PIGKGQ
Sbjct: 74 LVRLDTINGDPPEVCKHKILFENLTPLFPTEQFKLERDIKAEENLTGRAIDLVSPIGKGQ 133
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
R LLVA PK+GK+++LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STF
Sbjct: 134 RALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTF 193
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DEPA RHVQVAEMV+EKAKR+VE KKDV+ILLDSITRLARAYNTV+P SGK+LTGGVD+N
Sbjct: 194 DEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDAN 253
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
AL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEK
Sbjct: 254 ALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEK 313
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIW 340
R++PAI++NKSGTRREELL+ +D+LQ++W
Sbjct: 314 RLFPAISINKSGTRREELLVPNDQLQRMW 342
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 146/253 (57%), Gaps = 83/253 (32%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFA 480
G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFA
Sbjct: 14 GTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFA 73
Query: 481 LLKIKKVNVASPK--------------------------------SGKSI---------- 498
L+++ +N P+ +G++I
Sbjct: 74 LVRLDTINGDPPEVCKHKILFENLTPLFPTEQFKLERDIKAEENLTGRAIDLVSPIGKGQ 133
Query: 499 --------------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+LQ+IAHAIT N+ + +IV+LIDERPEEVTEM RSVRGEV++STF
Sbjct: 134 RALLVAPPKTGKTVMLQNIAHAITANYPDVELIVLLIDERPEEVTEMSRSVRGEVVSSTF 193
Query: 545 DEPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DEPA L + +LARAYNTV+P SGK+LTGGVD+N
Sbjct: 194 DEPAQRHVQVAEMVIEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDAN 253
Query: 578 ALQRPKRFFGAAR 590
AL RPKRFFGAAR
Sbjct: 254 ALHRPKRFFGAAR 266
>gi|148978450|ref|ZP_01814924.1| transcription termination factor Rho [Vibrionales bacterium SWAT-3]
gi|417951011|ref|ZP_12594122.1| transcription termination factor Rho [Vibrio splendidus ATCC 33789]
gi|145962357|gb|EDK27637.1| transcription termination factor Rho [Vibrionales bacterium SWAT-3]
gi|342805451|gb|EGU40714.1| transcription termination factor Rho [Vibrio splendidus ATCC 33789]
Length = 419
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER + E+IT RI+
Sbjct: 103 PPKDGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMVMERGNGATEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKNDELQKMWILRKIVHPM 390
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNHDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGATEDITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|332308443|ref|YP_004436294.1| transcription termination factor Rho [Glaciecola sp. 4H-3-7+YE-5]
gi|332175772|gb|AEE25026.1| transcription termination factor Rho [Glaciecola sp. 4H-3-7+YE-5]
Length = 433
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 306/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG+G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 56 KSGEDIFGNGVLEILQDGFGFLRSNDASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 115
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLKI +VN ++PE S+N+ LF+NLTPLH + L++ER S E+IT R++D
Sbjct: 116 PKDSERYFALLKISEVNFDRPENSRNKILFENLTPLHANERLVMERGNGSTEDITARVLD 175
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V
Sbjct: 176 LASPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLV 235
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 236 QGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 295
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 296 VLTGGVDANALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 355
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 356 HLNRKIAEKRVFPAIDYNRSGTRREELLTTQDELQKMWILRKIVHEMS 403
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 189 VAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLVQGEVVASTFDEPA 248
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 249 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 308
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 309 PKRFFGAAR 317
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 94/137 (68%), Gaps = 4/137 (2%)
Query: 366 PVEKNL--LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSL 423
P NL LK+ + ++ + + LE ++ R RKQ+++F+I K K GE IFG+G L
Sbjct: 10 PTNMNLTELKNKPISELVGLAEKMGLE--NMARARKQDIIFSILKTHAKSGEDIFGNGVL 67
Query: 424 EVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLK 483
E+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TG G+IR PK+ ERYFALLK
Sbjct: 68 EILQDGFGFLRSNDASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLK 127
Query: 484 IKKVNVASPKSGKSIIL 500
I +VN P++ ++ IL
Sbjct: 128 ISEVNFDRPENSRNKIL 144
>gi|26991890|ref|NP_747315.1| transcription termination factor Rho [Pseudomonas putida KT2440]
gi|148550323|ref|YP_001270425.1| transcription termination factor Rho [Pseudomonas putida F1]
gi|167036262|ref|YP_001671493.1| transcription termination factor Rho [Pseudomonas putida GB-1]
gi|170724194|ref|YP_001751882.1| transcription termination factor Rho [Pseudomonas putida W619]
gi|339489947|ref|YP_004704475.1| transcription termination factor Rho [Pseudomonas putida S16]
gi|386014486|ref|YP_005932763.1| hypothetical protein PPUBIRD1_5010 [Pseudomonas putida BIRD-1]
gi|395446104|ref|YP_006386357.1| transcription termination factor Rho [Pseudomonas putida ND6]
gi|397697152|ref|YP_006535035.1| transcription termination factor rho [Pseudomonas putida DOT-T1E]
gi|398847417|ref|ZP_10604329.1| transcription termination factor Rho [Pseudomonas sp. GM84]
gi|421523402|ref|ZP_15970031.1| transcription termination factor Rho [Pseudomonas putida LS46]
gi|431805052|ref|YP_007231955.1| transcription termination factor Rho [Pseudomonas putida HB3267]
gi|24987011|gb|AAN70779.1|AE016721_12 transcription termination factor Rho [Pseudomonas putida KT2440]
gi|148514381|gb|ABQ81241.1| transcription termination factor Rho [Pseudomonas putida F1]
gi|166862750|gb|ABZ01158.1| transcription termination factor Rho [Pseudomonas putida GB-1]
gi|169762197|gb|ACA75513.1| transcription termination factor Rho [Pseudomonas putida W619]
gi|313501192|gb|ADR62558.1| Rho [Pseudomonas putida BIRD-1]
gi|338840790|gb|AEJ15595.1| transcription termination factor Rho [Pseudomonas putida S16]
gi|388560101|gb|AFK69242.1| transcription termination factor Rho [Pseudomonas putida ND6]
gi|397333882|gb|AFO50241.1| Transcription termination factor rho [Pseudomonas putida DOT-T1E]
gi|398251577|gb|EJN36822.1| transcription termination factor Rho [Pseudomonas sp. GM84]
gi|402752388|gb|EJX12893.1| transcription termination factor Rho [Pseudomonas putida LS46]
gi|430795817|gb|AGA76012.1| transcription termination factor Rho [Pseudomonas putida HB3267]
Length = 419
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/347 (73%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P K L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|417955143|ref|ZP_12598166.1| transcription termination factor Rho [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|342813695|gb|EGU48655.1| transcription termination factor Rho [Vibrio orientalis CIP 102891
= ATCC 33934]
Length = 419
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNADKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++++LQK+W+LRK+++ +
Sbjct: 343 IHLNRKIAEKRVFPAIDFNRSGTRREELLTKNEELQKMWILRKIVHPM 390
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 83/112 (74%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN P + ++ IL
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNADKPDNARNKIL 132
>gi|410629380|ref|ZP_11340084.1| transcription termination factor Rho [Glaciecola mesophila KMM 241]
gi|410151176|dbj|GAC26853.1| transcription termination factor Rho [Glaciecola mesophila KMM 241]
Length = 421
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 306/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSNDASYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLKI +VN ++PE ++N+ LF+NLTPLH + L++ER S E+IT R++D
Sbjct: 104 PKDSERYFALLKISEVNFDRPENARNKILFENLTPLHANERLVMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 QGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 344 HLNRKIAEKRVFPAIDYNRSGTRREELLTTPDELQKMWILRKIVHEMS 391
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLVQGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 82/110 (74%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F+I K K GE IFGDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 LENMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQDGFGFLRSNDASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK+ ERYFALLKI +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKDSERYFALLKISEVNFDRPENARNKIL 132
>gi|343492792|ref|ZP_08731143.1| transcription termination factor Rho [Vibrio nigripulchritudo ATCC
27043]
gi|342826819|gb|EGU61229.1| transcription termination factor Rho [Vibrio nigripulchritudo ATCC
27043]
Length = 419
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 305/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNHDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKADELQKMWILRKIVHPM 390
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNHDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|219871033|ref|YP_002475408.1| transcription termination factor Rho [Haemophilus parasuis SH0165]
gi|219691237|gb|ACL32460.1| transcription termination factor Rho [Haemophilus parasuis SH0165]
Length = 399
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/345 (72%), Positives = 303/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 23 AKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 82
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER SKE++T RI+
Sbjct: 83 PPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSKEDLTARIL 142
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 143 DLASPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRS 202
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 203 VKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASG 262
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 263 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 322
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 323 LHLSRKIAERRVFPAIDFNRSGTRKEDLLTSPDELQKMWILRKIL 367
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 151/284 (53%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF------------------ 430
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+LPD GF
Sbjct: 3 LENLARLRKQDIIFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVS 62
Query: 431 ----------------GFLR--SQGSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
G +R +G Y A + D +S S+I NL T +
Sbjct: 63 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKILFENL-TPLHA 121
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG + +I + + VA PK+GK+++LQ+IA +IT N+ E
Sbjct: 122 NSRLRMERGNGSKEDLTARILDLASPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNYPE 181
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 182 CELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVV 241
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 242 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 285
>gi|221133953|ref|ZP_03560258.1| transcription termination factor Rho [Glaciecola sp. HTCC2999]
Length = 421
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/362 (70%), Positives = 307/362 (84%), Gaps = 2/362 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI++VN +KPE S+N+ LF+NLTPLH + L +ER S E+IT R++
Sbjct: 103 PPKDSERYFALLKIREVNFDKPENSRNKILFENLTPLHANERLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTLLLQNIAQSIAANHPDCQLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VQGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL R++AEKRV+PAI+ N+SGTRREELL +LQ++W+LRK+++ MT F I
Sbjct: 343 LHLNRKIAEKRVFPAIDYNRSGTRREELLTNQKELQQMWILRKIVHE--MTEIDAMEFLI 400
Query: 362 KR 363
R
Sbjct: 401 SR 402
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPDCQLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A + + LE ++ R RKQ+++F+I K K GE IFGDG LE+L DGFG
Sbjct: 6 LKNKPISELVALSSEMGLE--NLARARKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+ ERYFALLKI++VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSISGKIRPPKDSERYFALLKIREVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRNKIL 132
>gi|407698725|ref|YP_006823512.1| transcription termination factor Rho [Alteromonas macleodii str.
'Black Sea 11']
gi|407247872|gb|AFT77057.1| transcription termination factor Rho [Alteromonas macleodii str.
'Black Sea 11']
Length = 421
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/349 (71%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI++VN +KPE S+N+ LF+NLTPLH L +ER S E+IT R++
Sbjct: 103 PPKDSERYFALLKIREVNFDKPENSRNKILFENLTPLHAADRLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEM R
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECELMVLLIDERPEEVTEMHRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VQGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTAQDELQKMWILRKIVHEMS 391
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEM R V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPECELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A + + LE ++ R RKQ+++F+I K K GE IFGDG LE+L DGFG
Sbjct: 6 LKNKPISELVALAEEMGLE--NMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+ ERYFALLKI++VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRNKIL 132
>gi|153834688|ref|ZP_01987355.1| transcription termination factor Rho [Vibrio harveyi HY01]
gi|148868884|gb|EDL67944.1| transcription termination factor Rho [Vibrio harveyi HY01]
Length = 427
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/351 (70%), Positives = 307/351 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 52 KGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRP 111
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++D
Sbjct: 112 PKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLD 171
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V
Sbjct: 172 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLV 231
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 232 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 291
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 292 VLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEI 351
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R++AEKRV+PAI+ N+SGTRREELL ++++LQK+W+LRK+++ + T
Sbjct: 352 HLNRKIAEKRVFPAIDFNRSGTRREELLTKNEELQKMWILRKIVHPMGETD 402
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 29 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 88
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 89 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 148
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 149 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 208
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 209 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 268
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 269 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 313
>gi|90414229|ref|ZP_01222209.1| transcription termination factor Rho [Photobacterium profundum
3TCK]
gi|90324676|gb|EAS41217.1| transcription termination factor Rho [Photobacterium profundum
3TCK]
Length = 421
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/352 (71%), Positives = 304/352 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 43 AKGGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNAVNYDKPDNARNKILFENLTPLHANDRMRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+I+LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTILLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 343 LHLSRKIAEKRVFPAIDFNRSGTRREELLAKPDELQKMWILRKIVHPMGETD 394
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 95/129 (73%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ +P ++A +++ LE ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNQPIPKLVALGESLGLE--NLARLRKQDIIFSILKQHAKGGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 64 FLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKDGERYFALLKVNAVNYDK 123
Query: 492 PKSGKSIIL 500
P + ++ IL
Sbjct: 124 PDNARNKIL 132
>gi|28899774|ref|NP_799379.1| transcription termination factor Rho [Vibrio parahaemolyticus RIMD
2210633]
gi|91228019|ref|ZP_01262104.1| transcription termination factor Rho [Vibrio alginolyticus 12G01]
gi|260362507|ref|ZP_05775433.1| transcription termination factor Rho [Vibrio parahaemolyticus
K5030]
gi|260877187|ref|ZP_05889542.1| transcription termination factor Rho [Vibrio parahaemolyticus
AN-5034]
gi|260897231|ref|ZP_05905727.1| transcription termination factor Rho [Vibrio parahaemolyticus
Peru-466]
gi|260901363|ref|ZP_05909758.1| transcription termination factor Rho [Vibrio parahaemolyticus
AQ4037]
gi|262392872|ref|YP_003284726.1| transcription termination factor Rho [Vibrio sp. Ex25]
gi|269964529|ref|ZP_06178768.1| transcription termination factor Rho [Vibrio alginolyticus 40B]
gi|375267030|ref|YP_005024473.1| transcription termination factor Rho [Vibrio sp. EJY3]
gi|433659076|ref|YP_007276455.1| Transcription termination factor Rho [Vibrio parahaemolyticus
BB22OP]
gi|451976064|ref|ZP_21927235.1| transcription termination factor Rho [Vibrio alginolyticus E0666]
gi|28808026|dbj|BAC61263.1| transcription termination factor Rho [Vibrio parahaemolyticus RIMD
2210633]
gi|91188248|gb|EAS74547.1| transcription termination factor Rho [Vibrio alginolyticus 12G01]
gi|262336466|gb|ACY50261.1| transcription termination factor Rho [Vibrio sp. Ex25]
gi|269830656|gb|EEZ84876.1| transcription termination factor Rho [Vibrio alginolyticus 40B]
gi|308088933|gb|EFO38628.1| transcription termination factor Rho [Vibrio parahaemolyticus
Peru-466]
gi|308094130|gb|EFO43825.1| transcription termination factor Rho [Vibrio parahaemolyticus
AN-5034]
gi|308107172|gb|EFO44712.1| transcription termination factor Rho [Vibrio parahaemolyticus
AQ4037]
gi|308112669|gb|EFO50209.1| transcription termination factor Rho [Vibrio parahaemolyticus
K5030]
gi|369842350|gb|AEX23494.1| transcription termination factor Rho [Vibrio sp. EJY3]
gi|432509764|gb|AGB11281.1| Transcription termination factor Rho [Vibrio parahaemolyticus
BB22OP]
gi|451929971|gb|EMD77694.1| transcription termination factor Rho [Vibrio alginolyticus E0666]
Length = 419
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 305/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPM 390
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|350559822|ref|ZP_08928662.1| transcription termination factor Rho [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349782090|gb|EGZ36373.1| transcription termination factor Rho [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 419
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/347 (70%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLR S+Y+A DD+Y+SPSQIRRF L TGD + G+IR
Sbjct: 44 KTGEPIFGDGVLEILSDGFGFLRGADSSYLAGPDDVYVSPSQIRRFGLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLK+ K+N E PE ++++ LF+NLTPLHP + + +ER S E+IT R+ID
Sbjct: 104 PKDNERYFALLKVSKINFEPPENARHKVLFENLTPLHPNQRMRMERGNGSTEDITARVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
++AP GKGQRGL+V+ PK+GK+++LQ+IA +I TN+ ++ +IV+LIDERPEEVTEM R V
Sbjct: 164 MVAPFGKGQRGLIVSPPKAGKTLMLQNIAQSIATNYPDSYLIVLLIDERPEEVTEMTRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 QGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIEEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKRVYPAIN+N+SGTRREELL + D+LQK+W+LRK L+ +
Sbjct: 344 HLDRRIAEKRVYPAINVNRSGTRREELLTEPDELQKLWILRKFLHGM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +I TN+ ++ +IV+LIDERPEEVTEM R V+GEV++STFDEPA
Sbjct: 177 VSPPKAGKTLMLQNIAQSIATNYPDSYLIVLLIDERPEEVTEMTRMVQGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 87/128 (67%), Gaps = 4/128 (3%)
Query: 373 KDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGF 432
K A + AE+Q ID ++ R RKQE++FA+ K K GE IFGDG LE+L DGFGF
Sbjct: 9 KTAAELVAFAESQGID----NMSRARKQEIIFALLKAHAKTGEPIFGDGVLEILSDGFGF 64
Query: 433 LRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
LR S+Y+A DD+Y+SPSQIRRF L TG G+IR PK+ ERYFALLK+ K+N P
Sbjct: 65 LRGADSSYLAGPDDVYVSPSQIRRFGLRTGDTISGKIRPPKDNERYFALLKVSKINFEPP 124
Query: 493 KSGKSIIL 500
++ + +L
Sbjct: 125 ENARHKVL 132
>gi|429330980|ref|ZP_19211754.1| transcription termination factor Rho [Pseudomonas putida CSV86]
gi|428764307|gb|EKX86448.1| transcription termination factor Rho [Pseudomonas putida CSV86]
Length = 419
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 254/347 (73%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|410640415|ref|ZP_11350948.1| transcription termination factor Rho [Glaciecola chathamensis
S18K6]
gi|410646220|ref|ZP_11356673.1| transcription termination factor Rho [Glaciecola agarilytica NO2]
gi|410134160|dbj|GAC05072.1| transcription termination factor Rho [Glaciecola agarilytica NO2]
gi|410140088|dbj|GAC09135.1| transcription termination factor Rho [Glaciecola chathamensis
S18K6]
Length = 421
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 306/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG+G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGNGVLEILQDGFGFLRSNDASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLKI +VN ++PE S+N+ LF+NLTPLH + L++ER S E+IT R++D
Sbjct: 104 PKDSERYFALLKISEVNFDRPENSRNKILFENLTPLHANERLVMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 QGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 344 HLNRKIAEKRVFPAIDYNRSGTRREELLTTQDELQKMWILRKIVHEMS 391
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLVQGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 82/110 (74%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F+I K K GE IFG+G LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 LENMARARKQDIIFSILKTHAKSGEDIFGNGVLEILQDGFGFLRSNDASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK+ ERYFALLKI +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKISEVNFDRPENSRNKIL 132
>gi|71728606|gb|EAO30758.1| Transcription termination factor Rho [Xylella fastidiosa Ann-1]
Length = 606
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 231 TRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 290
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P+K LER S E+ITGRI+
Sbjct: 291 FPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRIL 350
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+
Sbjct: 351 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRT 410
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRL+E KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 411 VRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSG 470
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 471 KVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCE 530
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AEKRVYPAI++N+SGTRRE+LLI+ D LQKIW+LRKLL+ +
Sbjct: 531 LHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPM 578
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 365 VSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 424
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD++AL R
Sbjct: 425 ARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHR 484
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 485 PKRFFGAAR 493
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 214 VARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 273
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G IR PK+GERYFAL + +N ++ K+ IL
Sbjct: 274 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKIL 320
>gi|71275292|ref|ZP_00651579.1| Transcription termination factor Rho [Xylella fastidiosa Dixon]
gi|71164101|gb|EAO13816.1| Transcription termination factor Rho [Xylella fastidiosa Dixon]
Length = 564
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 189 TRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 248
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P+K LER S E+ITGRI+
Sbjct: 249 FPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRIL 308
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+
Sbjct: 309 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRT 368
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRL+E KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 369 VRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSG 428
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 429 KVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCE 488
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AEKRVYPAI++N+SGTRRE+LLI+ D LQKIW+LRKLL+ +
Sbjct: 489 LHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPM 536
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 323 VSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 382
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD++AL R
Sbjct: 383 ARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHR 442
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 443 PKRFFGAAR 451
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 172 VARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 231
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G IR PK+GERYFAL + +N ++ K+ IL
Sbjct: 232 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKIL 278
>gi|182682668|ref|YP_001830828.1| transcription termination factor Rho [Xylella fastidiosa M23]
gi|182632778|gb|ACB93554.1| transcription termination factor Rho [Xylella fastidiosa M23]
Length = 564
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 189 TRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 248
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P+K LER S E+ITGRI+
Sbjct: 249 FPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRIL 308
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+
Sbjct: 309 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRT 368
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRL+E KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 369 VRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSG 428
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 429 KVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCE 488
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AEKRVYPAI++N+SGTRRE+LLI+ D LQKIW+LRKLL+ +
Sbjct: 489 LHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPM 536
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 323 VSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 382
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD++AL R
Sbjct: 383 ARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHR 442
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 443 PKRFFGAAR 451
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 172 VARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 231
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G IR PK+GERYFAL + +N ++ K+ IL
Sbjct: 232 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKIL 278
>gi|71892351|ref|YP_278085.1| transcription termination factor Rho [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|440510148|ref|YP_007347584.1| transcription termination factor Rho [Candidatus Blochmannia
chromaiodes str. 640]
gi|71796457|gb|AAZ41208.1| transcription termination factor Rho [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|440454361|gb|AGC03853.1| transcription termination factor Rho [Candidatus Blochmannia
chromaiodes str. 640]
Length = 419
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 302/348 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KTGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNDVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+I+LQ+IA +I+ NH + + IV+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTILLQNIAQSISHNHPDCVSIVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
GEVIASTFDEPA RHVQV+EMV+EKAKRLVE KKDVIILLDSITRLARAYNT++P+SGK
Sbjct: 224 HGEVIASTFDEPASRHVQVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTIVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTR+EELL D+LQKIW+LRK+++ ++
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQDELQKIWILRKIIHPMS 391
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 140/283 (49%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ R+RKQ+++FAIFK+ K GE I FG D S PD
Sbjct: 23 LENLARMRKQDIIFAIFKQHAKTGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVS 82
Query: 434 RSQ---------------------GSNYMA---SSDDIYLSPSQIRR---FNLHTGILWK 466
SQ G Y A +D Y P R F T +
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNDVNYDKPENARNKILFENLTPLHAN 142
Query: 467 GEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSEA 514
+R+ + NG ++ + + VA PK+GK+I+LQ+IA +I+ NH +
Sbjct: 143 SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTILLQNIAQSISHNHPDC 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+ IV+LIDERPEEVTEMQR V GEVIASTFDEPA
Sbjct: 203 VSIVLLIDERPEEVTEMQRLVHGEVIASTFDEPASRHVQVSEMVIEKAKRLVEHKKDVII 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT++P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTIVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|260775116|ref|ZP_05884015.1| transcription termination factor Rho [Vibrio coralliilyticus ATCC
BAA-450]
gi|323494191|ref|ZP_08099306.1| transcription termination factor Rho [Vibrio brasiliensis LMG
20546]
gi|343501049|ref|ZP_08738932.1| transcription termination factor Rho [Vibrio tubiashii ATCC 19109]
gi|418477787|ref|ZP_13046909.1| transcription termination factor Rho [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|260609033|gb|EEX35193.1| transcription termination factor Rho [Vibrio coralliilyticus ATCC
BAA-450]
gi|323311585|gb|EGA64734.1| transcription termination factor Rho [Vibrio brasiliensis LMG
20546]
gi|342819037|gb|EGU53884.1| transcription termination factor Rho [Vibrio tubiashii ATCC 19109]
gi|384574564|gb|EIF05029.1| transcription termination factor Rho [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 419
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++++LQK+W+LRK+++ +
Sbjct: 343 IHLNRKIAEKRVFPAIDFNRSGTRREELLTKNEELQKMWILRKIVHPM 390
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|365972676|ref|YP_004954237.1| transcription termination factor Rho [Enterobacter cloacae EcWSU1]
gi|365751589|gb|AEW75816.1| Transcription termination factor Rho [Enterobacter cloacae EcWSU1]
Length = 443
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 68 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 127
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 128 PKEGERYFALLKVNEVNFDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 187
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 188 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 247
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 248 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 307
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 308 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 367
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 368 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 414
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 261 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 52 RMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIR 111
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 112 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENSRNKIL 156
>gi|289209629|ref|YP_003461695.1| transcription termination factor Rho [Thioalkalivibrio sp. K90mix]
gi|288945260|gb|ADC72959.1| transcription termination factor Rho [Thioalkalivibrio sp. K90mix]
Length = 419
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y A DD+Y+SPSQIRRF L TGD + G+IR
Sbjct: 43 AKSGEAIYGDGVLEILSDGFGFLRSADSSYQAGPDDVYVSPSQIRRFGLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLK+ ++N E PE ++++ LF+NLTPLHP K + +ER S E+IT R+I
Sbjct: 103 PPKDNERYFALLKVSEINFEPPENARHKVLFENLTPLHPSKRMRMERGNGSTEDITARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP GKGQRGL+V+ PK+GK+++LQ+IA +I TN+ E +IV+LIDERPEEVTEM R
Sbjct: 163 DIVAPFGKGQRGLIVSPPKAGKTLMLQNIAQSIATNYPECYLIVLLIDERPEEVTEMDRM 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV P+SG
Sbjct: 223 VQGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVAPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVETGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHLERR+AEKR+YPAIN+N+SGTRREELL D+LQK+W+LRK L+ +
Sbjct: 343 VHLERRIAEKRIYPAINVNRSGTRREELLTAPDELQKLWILRKFLHGM 390
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +I TN+ E +IV+LIDERPEEVTEM R V+GEV++STFDEPA
Sbjct: 177 VSPPKAGKTLMLQNIAQSIATNYPECYLIVLLIDERPEEVTEMDRMVQGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD+NAL R
Sbjct: 237 QRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVAPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 84/122 (68%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
+ AE + ID ++ R RKQE++FA+ K K GE I+GDG LE+L DGFGFLRS S
Sbjct: 15 VAFAEEKGID----NMSRARKQEIIFALLKAHAKSGEAIYGDGVLEILSDGFGFLRSADS 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y A DD+Y+SPSQIRRF L TG G+IR PK+ ERYFALLK+ ++N P++ +
Sbjct: 71 SYQAGPDDVYVSPSQIRRFGLRTGDTIAGKIRPPKDNERYFALLKVSEINFEPPENARHK 130
Query: 499 IL 500
+L
Sbjct: 131 VL 132
>gi|345301418|ref|YP_004830776.1| transcription termination factor Rho [Enterobacter asburiae LF7a]
gi|345095355|gb|AEN66991.1| transcription termination factor Rho [Enterobacter asburiae LF7a]
Length = 443
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 68 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 127
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 128 PKEGERYFALLKVNEVNYDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 187
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 188 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 247
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 248 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 307
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 308 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 367
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 368 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 414
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 261 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 52 RMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIR 111
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 112 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENSRNKIL 156
>gi|22124276|ref|NP_667699.1| transcription termination factor Rho [Yersinia pestis KIM10+]
gi|45442930|ref|NP_994469.1| transcription termination factor Rho [Yersinia pestis biovar
Microtus str. 91001]
gi|51594523|ref|YP_068714.1| transcription termination factor Rho [Yersinia pseudotuberculosis
IP 32953]
gi|108806149|ref|YP_650065.1| transcription termination factor Rho [Yersinia pestis Antiqua]
gi|108810262|ref|YP_646029.1| transcription termination factor Rho [Yersinia pestis Nepal516]
gi|145600735|ref|YP_001164811.1| transcription termination factor Rho [Yersinia pestis Pestoides F]
gi|153947228|ref|YP_001399177.1| transcription termination factor Rho [Yersinia pseudotuberculosis
IP 31758]
gi|153997077|ref|ZP_02022210.1| transcription termination factor [Yersinia pestis CA88-4125]
gi|162421255|ref|YP_001605108.1| transcription termination factor Rho [Yersinia pestis Angola]
gi|165926348|ref|ZP_02222180.1| transcription termination factor Rho [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939680|ref|ZP_02228223.1| transcription termination factor Rho [Yersinia pestis biovar
Orientalis str. IP275]
gi|166009660|ref|ZP_02230558.1| transcription termination factor Rho [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213582|ref|ZP_02239617.1| transcription termination factor Rho [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167402066|ref|ZP_02307545.1| transcription termination factor Rho [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421074|ref|ZP_02312827.1| transcription termination factor Rho [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425983|ref|ZP_02317736.1| transcription termination factor Rho [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170026244|ref|YP_001722749.1| transcription termination factor Rho [Yersinia pseudotuberculosis
YPIII]
gi|186893521|ref|YP_001870633.1| transcription termination factor Rho [Yersinia pseudotuberculosis
PB1/+]
gi|218930870|ref|YP_002348745.1| transcription termination factor Rho [Yersinia pestis CO92]
gi|229837200|ref|ZP_04457365.1| transcription termination factor [Yersinia pestis Pestoides A]
gi|229839560|ref|ZP_04459719.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229900123|ref|ZP_04515260.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229900430|ref|ZP_04515559.1| transcription termination factor [Yersinia pestis Nepal516]
gi|270488786|ref|ZP_06205860.1| transcription termination factor Rho [Yersinia pestis KIM D27]
gi|294505530|ref|YP_003569592.1| transcription termination factor Rho [Yersinia pestis Z176003]
gi|384124000|ref|YP_005506620.1| transcription termination factor Rho [Yersinia pestis D106004]
gi|384127860|ref|YP_005510474.1| transcription termination factor Rho [Yersinia pestis D182038]
gi|384138272|ref|YP_005520974.1| transcription termination factor Rho [Yersinia pestis A1122]
gi|384413028|ref|YP_005622390.1| transcription termination factor [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420549066|ref|ZP_15046814.1| transcription termination factor Rho [Yersinia pestis PY-01]
gi|420554418|ref|ZP_15051589.1| transcription termination factor Rho [Yersinia pestis PY-02]
gi|420560055|ref|ZP_15056475.1| transcription termination factor Rho [Yersinia pestis PY-03]
gi|420565423|ref|ZP_15061310.1| transcription termination factor Rho [Yersinia pestis PY-04]
gi|420570453|ref|ZP_15065883.1| transcription termination factor Rho [Yersinia pestis PY-05]
gi|420576132|ref|ZP_15071016.1| transcription termination factor Rho [Yersinia pestis PY-06]
gi|420581421|ref|ZP_15075828.1| transcription termination factor Rho [Yersinia pestis PY-07]
gi|420586826|ref|ZP_15080718.1| transcription termination factor Rho [Yersinia pestis PY-08]
gi|420591913|ref|ZP_15085291.1| transcription termination factor Rho [Yersinia pestis PY-09]
gi|420597290|ref|ZP_15090130.1| transcription termination factor Rho [Yersinia pestis PY-10]
gi|420602981|ref|ZP_15095179.1| transcription termination factor Rho [Yersinia pestis PY-11]
gi|420608374|ref|ZP_15100076.1| transcription termination factor Rho [Yersinia pestis PY-12]
gi|420613782|ref|ZP_15104919.1| transcription termination factor Rho [Yersinia pestis PY-13]
gi|420619125|ref|ZP_15109577.1| transcription termination factor Rho [Yersinia pestis PY-14]
gi|420624439|ref|ZP_15114367.1| transcription termination factor Rho [Yersinia pestis PY-15]
gi|420629415|ref|ZP_15118881.1| transcription termination factor Rho [Yersinia pestis PY-16]
gi|420630084|ref|ZP_15119485.1| transcription termination factor Rho [Yersinia pestis PY-19]
gi|420639856|ref|ZP_15128261.1| transcription termination factor Rho [Yersinia pestis PY-25]
gi|420645291|ref|ZP_15133233.1| transcription termination factor Rho [Yersinia pestis PY-29]
gi|420650624|ref|ZP_15138034.1| transcription termination factor Rho [Yersinia pestis PY-32]
gi|420656241|ref|ZP_15143097.1| transcription termination factor Rho [Yersinia pestis PY-34]
gi|420661686|ref|ZP_15147950.1| transcription termination factor Rho [Yersinia pestis PY-36]
gi|420667045|ref|ZP_15152782.1| transcription termination factor Rho [Yersinia pestis PY-42]
gi|420671893|ref|ZP_15157204.1| transcription termination factor Rho [Yersinia pestis PY-45]
gi|420677235|ref|ZP_15162063.1| transcription termination factor Rho [Yersinia pestis PY-46]
gi|420682804|ref|ZP_15167082.1| transcription termination factor Rho [Yersinia pestis PY-47]
gi|420688210|ref|ZP_15171894.1| transcription termination factor Rho [Yersinia pestis PY-48]
gi|420693486|ref|ZP_15176506.1| transcription termination factor Rho [Yersinia pestis PY-52]
gi|420699207|ref|ZP_15181552.1| transcription termination factor Rho [Yersinia pestis PY-53]
gi|420705109|ref|ZP_15186200.1| transcription termination factor Rho [Yersinia pestis PY-54]
gi|420710356|ref|ZP_15190920.1| transcription termination factor Rho [Yersinia pestis PY-55]
gi|420715869|ref|ZP_15195806.1| transcription termination factor Rho [Yersinia pestis PY-56]
gi|420721413|ref|ZP_15200543.1| transcription termination factor Rho [Yersinia pestis PY-58]
gi|420726846|ref|ZP_15205344.1| transcription termination factor Rho [Yersinia pestis PY-59]
gi|420732345|ref|ZP_15210292.1| transcription termination factor Rho [Yersinia pestis PY-60]
gi|420737334|ref|ZP_15214798.1| transcription termination factor Rho [Yersinia pestis PY-61]
gi|420742836|ref|ZP_15219743.1| transcription termination factor Rho [Yersinia pestis PY-63]
gi|420748713|ref|ZP_15224674.1| transcription termination factor Rho [Yersinia pestis PY-64]
gi|420753963|ref|ZP_15229400.1| transcription termination factor Rho [Yersinia pestis PY-65]
gi|420759964|ref|ZP_15234186.1| transcription termination factor Rho [Yersinia pestis PY-66]
gi|420765120|ref|ZP_15238780.1| transcription termination factor Rho [Yersinia pestis PY-71]
gi|420770349|ref|ZP_15243461.1| transcription termination factor Rho [Yersinia pestis PY-72]
gi|420775331|ref|ZP_15247981.1| transcription termination factor Rho [Yersinia pestis PY-76]
gi|420780955|ref|ZP_15252914.1| transcription termination factor Rho [Yersinia pestis PY-88]
gi|420786581|ref|ZP_15257832.1| transcription termination factor Rho [Yersinia pestis PY-89]
gi|420791602|ref|ZP_15262357.1| transcription termination factor Rho [Yersinia pestis PY-90]
gi|420797181|ref|ZP_15267374.1| transcription termination factor Rho [Yersinia pestis PY-91]
gi|420802272|ref|ZP_15271948.1| transcription termination factor Rho [Yersinia pestis PY-92]
gi|420807606|ref|ZP_15276787.1| transcription termination factor Rho [Yersinia pestis PY-93]
gi|420813024|ref|ZP_15281632.1| transcription termination factor Rho [Yersinia pestis PY-94]
gi|420818467|ref|ZP_15286577.1| transcription termination factor Rho [Yersinia pestis PY-95]
gi|420823826|ref|ZP_15291363.1| transcription termination factor Rho [Yersinia pestis PY-96]
gi|420828887|ref|ZP_15295928.1| transcription termination factor Rho [Yersinia pestis PY-98]
gi|420834473|ref|ZP_15300967.1| transcription termination factor Rho [Yersinia pestis PY-99]
gi|420839416|ref|ZP_15305436.1| transcription termination factor Rho [Yersinia pestis PY-100]
gi|420844620|ref|ZP_15310156.1| transcription termination factor Rho [Yersinia pestis PY-101]
gi|420850269|ref|ZP_15315228.1| transcription termination factor Rho [Yersinia pestis PY-102]
gi|420856004|ref|ZP_15320057.1| transcription termination factor Rho [Yersinia pestis PY-103]
gi|420861093|ref|ZP_15324554.1| transcription termination factor Rho [Yersinia pestis PY-113]
gi|421765392|ref|ZP_16202177.1| transcription termination factor Rho [Yersinia pestis INS]
gi|21957045|gb|AAM83950.1|AE013636_8 transcription termination factor Rho; polarity suppressor [Yersinia
pestis KIM10+]
gi|45437797|gb|AAS63346.1| transcription termination factor [Yersinia pestis biovar Microtus
str. 91001]
gi|51587805|emb|CAH19407.1| transcription termination factor [Yersinia pseudotuberculosis IP
32953]
gi|108773910|gb|ABG16429.1| transcription termination factor Rho [Yersinia pestis Nepal516]
gi|108778062|gb|ABG12120.1| transcription termination factor Rho [Yersinia pestis Antiqua]
gi|115349481|emb|CAL22454.1| transcription termination factor [Yersinia pestis CO92]
gi|145212431|gb|ABP41838.1| transcription termination factor Rho [Yersinia pestis Pestoides F]
gi|149289383|gb|EDM39461.1| transcription termination factor [Yersinia pestis CA88-4125]
gi|152958723|gb|ABS46184.1| transcription termination factor Rho [Yersinia pseudotuberculosis
IP 31758]
gi|162354070|gb|ABX88018.1| transcription termination factor Rho [Yersinia pestis Angola]
gi|165912370|gb|EDR31004.1| transcription termination factor Rho [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921872|gb|EDR39069.1| transcription termination factor Rho [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165991582|gb|EDR43883.1| transcription termination factor Rho [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205255|gb|EDR49735.1| transcription termination factor Rho [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961203|gb|EDR57224.1| transcription termination factor Rho [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048540|gb|EDR59948.1| transcription termination factor Rho [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055131|gb|EDR64930.1| transcription termination factor Rho [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752778|gb|ACA70296.1| transcription termination factor Rho [Yersinia pseudotuberculosis
YPIII]
gi|186696547|gb|ACC87176.1| transcription termination factor Rho [Yersinia pseudotuberculosis
PB1/+]
gi|229682449|gb|EEO78536.1| transcription termination factor [Yersinia pestis Nepal516]
gi|229686903|gb|EEO78982.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695926|gb|EEO85973.1| transcription termination factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706143|gb|EEO92152.1| transcription termination factor [Yersinia pestis Pestoides A]
gi|262363596|gb|ACY60317.1| transcription termination factor Rho [Yersinia pestis D106004]
gi|262367524|gb|ACY64081.1| transcription termination factor Rho [Yersinia pestis D182038]
gi|270337290|gb|EFA48067.1| transcription termination factor Rho [Yersinia pestis KIM D27]
gi|294355989|gb|ADE66330.1| transcription termination factor Rho [Yersinia pestis Z176003]
gi|320013532|gb|ADV97103.1| transcription termination factor [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342853401|gb|AEL71954.1| transcription termination factor Rho [Yersinia pestis A1122]
gi|391421037|gb|EIQ83766.1| transcription termination factor Rho [Yersinia pestis PY-01]
gi|391421210|gb|EIQ83924.1| transcription termination factor Rho [Yersinia pestis PY-03]
gi|391421260|gb|EIQ83970.1| transcription termination factor Rho [Yersinia pestis PY-02]
gi|391436032|gb|EIQ97021.1| transcription termination factor Rho [Yersinia pestis PY-04]
gi|391437383|gb|EIQ98243.1| transcription termination factor Rho [Yersinia pestis PY-05]
gi|391440886|gb|EIR01414.1| transcription termination factor Rho [Yersinia pestis PY-06]
gi|391453205|gb|EIR12540.1| transcription termination factor Rho [Yersinia pestis PY-07]
gi|391453344|gb|EIR12667.1| transcription termination factor Rho [Yersinia pestis PY-08]
gi|391455072|gb|EIR14222.1| transcription termination factor Rho [Yersinia pestis PY-09]
gi|391469009|gb|EIR26833.1| transcription termination factor Rho [Yersinia pestis PY-10]
gi|391469726|gb|EIR27472.1| transcription termination factor Rho [Yersinia pestis PY-11]
gi|391471157|gb|EIR28741.1| transcription termination factor Rho [Yersinia pestis PY-12]
gi|391484893|gb|EIR41100.1| transcription termination factor Rho [Yersinia pestis PY-13]
gi|391486385|gb|EIR42423.1| transcription termination factor Rho [Yersinia pestis PY-15]
gi|391486474|gb|EIR42502.1| transcription termination factor Rho [Yersinia pestis PY-14]
gi|391501019|gb|EIR55461.1| transcription termination factor Rho [Yersinia pestis PY-16]
gi|391506035|gb|EIR59993.1| transcription termination factor Rho [Yersinia pestis PY-25]
gi|391515028|gb|EIR68086.1| transcription termination factor Rho [Yersinia pestis PY-19]
gi|391517096|gb|EIR69934.1| transcription termination factor Rho [Yersinia pestis PY-29]
gi|391518182|gb|EIR70915.1| transcription termination factor Rho [Yersinia pestis PY-34]
gi|391518759|gb|EIR71452.1| transcription termination factor Rho [Yersinia pestis PY-32]
gi|391531320|gb|EIR82820.1| transcription termination factor Rho [Yersinia pestis PY-36]
gi|391534267|gb|EIR85461.1| transcription termination factor Rho [Yersinia pestis PY-42]
gi|391536598|gb|EIR87566.1| transcription termination factor Rho [Yersinia pestis PY-45]
gi|391549750|gb|EIR99427.1| transcription termination factor Rho [Yersinia pestis PY-46]
gi|391549962|gb|EIR99623.1| transcription termination factor Rho [Yersinia pestis PY-47]
gi|391550278|gb|EIR99907.1| transcription termination factor Rho [Yersinia pestis PY-48]
gi|391564429|gb|EIS12632.1| transcription termination factor Rho [Yersinia pestis PY-52]
gi|391565930|gb|EIS13976.1| transcription termination factor Rho [Yersinia pestis PY-53]
gi|391569204|gb|EIS16819.1| transcription termination factor Rho [Yersinia pestis PY-54]
gi|391579548|gb|EIS25655.1| transcription termination factor Rho [Yersinia pestis PY-55]
gi|391581083|gb|EIS27005.1| transcription termination factor Rho [Yersinia pestis PY-56]
gi|391591516|gb|EIS36068.1| transcription termination factor Rho [Yersinia pestis PY-58]
gi|391595089|gb|EIS39171.1| transcription termination factor Rho [Yersinia pestis PY-60]
gi|391595727|gb|EIS39738.1| transcription termination factor Rho [Yersinia pestis PY-59]
gi|391609591|gb|EIS51966.1| transcription termination factor Rho [Yersinia pestis PY-61]
gi|391609882|gb|EIS52233.1| transcription termination factor Rho [Yersinia pestis PY-63]
gi|391611182|gb|EIS53382.1| transcription termination factor Rho [Yersinia pestis PY-64]
gi|391623025|gb|EIS63877.1| transcription termination factor Rho [Yersinia pestis PY-65]
gi|391625882|gb|EIS66323.1| transcription termination factor Rho [Yersinia pestis PY-66]
gi|391633331|gb|EIS72746.1| transcription termination factor Rho [Yersinia pestis PY-71]
gi|391634994|gb|EIS74203.1| transcription termination factor Rho [Yersinia pestis PY-72]
gi|391645237|gb|EIS83135.1| transcription termination factor Rho [Yersinia pestis PY-76]
gi|391648276|gb|EIS85810.1| transcription termination factor Rho [Yersinia pestis PY-88]
gi|391652573|gb|EIS89617.1| transcription termination factor Rho [Yersinia pestis PY-89]
gi|391658334|gb|EIS94748.1| transcription termination factor Rho [Yersinia pestis PY-90]
gi|391665938|gb|EIT01469.1| transcription termination factor Rho [Yersinia pestis PY-91]
gi|391675200|gb|EIT09741.1| transcription termination factor Rho [Yersinia pestis PY-93]
gi|391675551|gb|EIT10054.1| transcription termination factor Rho [Yersinia pestis PY-92]
gi|391675664|gb|EIT10157.1| transcription termination factor Rho [Yersinia pestis PY-94]
gi|391689451|gb|EIT22579.1| transcription termination factor Rho [Yersinia pestis PY-95]
gi|391691393|gb|EIT24327.1| transcription termination factor Rho [Yersinia pestis PY-96]
gi|391693152|gb|EIT25926.1| transcription termination factor Rho [Yersinia pestis PY-98]
gi|391706462|gb|EIT37893.1| transcription termination factor Rho [Yersinia pestis PY-99]
gi|391707505|gb|EIT38847.1| transcription termination factor Rho [Yersinia pestis PY-100]
gi|391710266|gb|EIT41349.1| transcription termination factor Rho [Yersinia pestis PY-101]
gi|391722387|gb|EIT52200.1| transcription termination factor Rho [Yersinia pestis PY-102]
gi|391722616|gb|EIT52399.1| transcription termination factor Rho [Yersinia pestis PY-103]
gi|391723410|gb|EIT53095.1| transcription termination factor Rho [Yersinia pestis PY-113]
gi|411173372|gb|EKS43417.1| transcription termination factor Rho [Yersinia pestis INS]
Length = 419
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LR++L+ +
Sbjct: 344 HLSRKIAEKRVFPAIDFNRSGTRKEELLTTTDELQKMWILRRILHPM 390
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTVAGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|379009707|ref|YP_005267520.1| transcription termination factor [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
gi|375158231|gb|AFA41297.1| transcription termination factor [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
Length = 419
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 304/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVDEVNHDKPENSRNKILFENLTPLHANSRLKMERGNGSTEDLTTRVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG+GQRGL+VA PK+GK+I+LQ+IA +I+ N+ E ++IV+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGRGQRGLIVAPPKAGKTILLQNIAQSISYNYPECVLIVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQV+EMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LR++++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTSTEELQKMWILRRIIHPMN 391
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 170/286 (59%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FA K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFATLKQHAKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL-------------------------- 481
Y+SPSQIRRFNL TG G+IR PK GERYFAL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVDEVNHDKPENSRNKILFENLTPL 139
Query: 482 -----LKIKKVN-------------------------VASPKSGKSIILQHIAHAITTNH 511
LK+++ N VA PK+GK+I+LQ+IA +I+ N+
Sbjct: 140 HANSRLKMERGNGSTEDLTTRVLDLAAPIGRGQRGLIVAPPKAGKTILLQNIAQSISYNY 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E ++IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 200 PECVLIVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVSEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 260 VIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAAR 305
>gi|156972678|ref|YP_001443585.1| transcription termination factor Rho [Vibrio harveyi ATCC BAA-1116]
gi|388598284|ref|ZP_10156680.1| transcription termination factor Rho [Vibrio campbellii DS40M4]
gi|444428646|ref|ZP_21223959.1| transcription termination factor Rho [Vibrio campbellii CAIM 519 =
NBRC 15631]
gi|156524272|gb|ABU69358.1| hypothetical protein VIBHAR_00336 [Vibrio harveyi ATCC BAA-1116]
gi|444238120|gb|ELU49746.1| transcription termination factor Rho [Vibrio campbellii CAIM 519 =
NBRC 15631]
Length = 419
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/352 (69%), Positives = 307/352 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL ++++LQK+W+LRK+++ + T
Sbjct: 343 IHLNRKIAEKRVFPAIDFNRSGTRREELLTKNEELQKMWILRKIVHPMGETD 394
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|81858363|sp|Q9PA21.1|RHO_XYLFA RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|9107942|gb|AAF85496.1|AE004076_1 transcription termination factor Rho [Xylella fastidiosa 9a5c]
Length = 411
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 36 TRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 95
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P+K LER S E+ITGRI+
Sbjct: 96 FPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRIL 155
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+
Sbjct: 156 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRT 215
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRL+E KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 216 VRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSG 275
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 276 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCE 335
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AEKRVYPAI++N+SGTRRE+LLI+ D LQKIW+LRKLL+ +
Sbjct: 336 LHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPM 383
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 170 VSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 229
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NAL R
Sbjct: 230 ARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHR 289
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 290 PKRFFGAAR 298
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 19 VARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 78
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G IR PK+GERYFAL + +N ++ K+ IL
Sbjct: 79 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKIL 125
>gi|52425892|ref|YP_089029.1| transcription termination factor Rho [Mannheimia succiniciproducens
MBEL55E]
gi|52307944|gb|AAU38444.1| Rho protein [Mannheimia succiniciproducens MBEL55E]
Length = 452
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/344 (72%), Positives = 302/344 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 77 KSGEDIFGGGILEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRP 136
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+D
Sbjct: 137 PKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARILD 196
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRSV
Sbjct: 197 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRSV 256
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASGK
Sbjct: 257 KGEVIASTFDEPASRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASGK 316
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+
Sbjct: 317 ILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEL 376
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 377 HLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 420
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 142/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIF-----------------GDGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE IF D S PD
Sbjct: 56 LENLARLRKQDIVFAILKQHAKSGEDIFGGGILEILPDGFGFLRSADSSYLAGPDDIYVS 115
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 116 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 174
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ E
Sbjct: 175 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPE 234
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 235 CELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPASRHVQVAEMVIEKAKRSVEHKKDVV 294
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 295 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 338
>gi|404398197|ref|ZP_10989781.1| transcription termination factor Rho [Pseudomonas fuscovaginae
UPB0736]
Length = 419
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/347 (72%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSSDASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSSDASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|375110217|ref|ZP_09756448.1| transcription termination factor Rho [Alishewanella jeotgali KCTC
22429]
gi|374569661|gb|EHR40813.1| transcription termination factor Rho [Alishewanella jeotgali KCTC
22429]
Length = 421
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/351 (71%), Positives = 302/351 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G IR
Sbjct: 43 AKNGEEIYGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN KPE ++N+ LF+NLTPLH L +ER S+E+IT R++
Sbjct: 103 PPKEGERYFALLKVSEVNFGKPEQARNKILFENLTPLHANSRLRMERGNGSREDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+I+LQ+IA +I NH E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTILLQNIAQSIAANHPECVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+HL R++AE+RV+PAI+ N+SGTRREELL ++LQK+W+LRK+L + T
Sbjct: 343 LHLSRKIAERRVFPAIDFNRSGTRREELLASPEELQKMWILRKILNPMDET 393
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 149/281 (53%), Gaps = 83/281 (29%)
Query: 393 SVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRS----------------- 435
++ RLRKQ+++FAI K K GE I+GDG LE+L DGFGFLRS
Sbjct: 25 NMARLRKQDIIFAILKAHAKNGEEIYGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPS 84
Query: 436 ---------------------QGSNYMA---SSDDIYLSPSQIRR---FNLHTGILWKGE 468
+G Y A S+ + P Q R F T +
Sbjct: 85 QIRRFNLRTGDSISGLIRPPKEGERYFALLKVSEVNFGKPEQARNKILFENLTPLHANSR 144
Query: 469 IRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSEAIM 516
+R+ + NG R ++ + + VA PK+GK+I+LQ+IA +I NH E ++
Sbjct: 145 LRMERGNGSREDITARVLDLAAPIGRGQRGLIVAPPKAGKTILLQNIAQSIAANHPECVL 204
Query: 517 IVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------L 549
+V+LIDERPEEVTEMQR V+GEV+ASTFDEPA L
Sbjct: 205 MVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264
Query: 550 SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFFGAAR
Sbjct: 265 DSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAAR 305
>gi|218710957|ref|YP_002418578.1| transcription termination factor Rho [Vibrio splendidus LGP32]
gi|218323976|emb|CAV20338.1| Transcription termination factor Rho [Vibrio splendidus LGP32]
Length = 427
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 305/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 52 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRP 111
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++E + E+IT RI+D
Sbjct: 112 PKDGERYFALLKVNTVNYDKPDNARNKILFENLTPLHANERMVMEAGNGATEDITARILD 171
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V
Sbjct: 172 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLV 231
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 232 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 291
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 292 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 351
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTRREELL ++D+LQK+W+LRK+++ +
Sbjct: 352 HLNRKIAEKRVFPAIDFNRSGTRREELLTKNDELQKMWILRKIVHPM 398
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 185 VAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 244
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 245 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 304
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 305 PKRFFGAAR 313
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 79/105 (75%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
RLRKQ+++F+I K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 36 RLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIR 95
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK+GERYFALLK+ VN P + ++ IL
Sbjct: 96 RFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPDNARNKIL 140
>gi|323143044|ref|ZP_08077749.1| transcription termination factor Rho [Succinatimonas hippei YIT
12066]
gi|322417185|gb|EFY07814.1| transcription termination factor Rho [Succinatimonas hippei YIT
12066]
Length = 419
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 300/347 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
+ GE IFG+G +E+LPDGFGFLRS S+Y+A DDIY+SPSQ+RRFNL TGD + G+IR
Sbjct: 44 RTGEDIFGEGVIEILPDGFGFLRSADSSYLAGPDDIYVSPSQVRRFNLRTGDSISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N EKPE ++N+ LF+NLTPL + LE SKE+IT R+ID
Sbjct: 104 PKEGERYFALLKVDSINYEKPENARNKILFENLTPLFADTRMRLELGNGSKEDITARVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+++LQ+IAH+I N+ E +IV+LIDERPEEVTEMQR V
Sbjct: 164 LTAPIGKGQRGLIVAPPKAGKTMLLQNIAHSIAVNNPECTLIVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE K DV+IL+DSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPATRHVQVAEMVIEKAKRLVEHKHDVVILMDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKR FGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQRPKRLFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRVYPAI++ +SGTRREELL D+LQK+W+LRK ++ +
Sbjct: 344 HLSRKIAEKRVYPAIDVTRSGTRREELLTTPDELQKMWILRKFVHPM 390
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IAH+I N+ E +IV+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAHSIAVNNPECTLIVLLIDERPEEVTEMQRMVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKHDVVILMDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKR FGAAR
Sbjct: 297 PKRLFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + RL K+E++F + K + GE IFG+G +E+LPDGFGFLRS S+Y+A DDIY+S
Sbjct: 23 IENTARLNKKEIIFQLLKLCARTGEDIFGEGVIEILPDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQ+RRFNL TG G+IR PK GERYFALLK+ +N P++ ++ IL
Sbjct: 83 PSQVRRFNLRTGDSISGKIRPPKEGERYFALLKVDSINYEKPENARNKIL 132
>gi|269962286|ref|ZP_06176638.1| transcription termination factor Rho [Vibrio harveyi 1DA3]
gi|350529726|ref|ZP_08908667.1| transcription termination factor Rho [Vibrio rotiferianus DAT722]
gi|269832989|gb|EEZ87096.1| transcription termination factor Rho [Vibrio harveyi 1DA3]
Length = 419
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++++LQK+W+LRK+++ +
Sbjct: 343 IHLNRKIAEKRVFPAIDFNRSGTRREELLTKNEELQKMWILRKIVHPM 390
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|424030710|ref|ZP_17770189.1| transcription termination factor Rho [Vibrio cholerae HENC-01]
gi|424034694|ref|ZP_17774092.1| transcription termination factor Rho [Vibrio cholerae HENC-02]
gi|424044518|ref|ZP_17782130.1| transcription termination factor Rho [Vibrio cholerae HENC-03]
gi|408881592|gb|EKM20468.1| transcription termination factor Rho [Vibrio cholerae HENC-01]
gi|408887915|gb|EKM26405.1| transcription termination factor Rho [Vibrio cholerae HENC-03]
gi|408904007|gb|EKM34038.1| transcription termination factor Rho [Vibrio cholerae HENC-02]
Length = 409
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 33 AKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 92
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 93 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 152
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 153 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 212
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 213 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 272
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 273 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 332
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++++LQK+W+LRK+++ +
Sbjct: 333 IHLNRKIAEKRVFPAIDFNRSGTRREELLTKNEELQKMWILRKIVHPM 380
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 11 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 70
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 71 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 130
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 131 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 190
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 191 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 250
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 251 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 295
>gi|332139980|ref|YP_004425718.1| transcription termination factor Rho [Alteromonas macleodii str.
'Deep ecotype']
gi|410860170|ref|YP_006975404.1| transcription termination factor Rho [Alteromonas macleodii AltDE1]
gi|327550002|gb|AEA96720.1| transcription termination factor Rho [Alteromonas macleodii str.
'Deep ecotype']
gi|410817432|gb|AFV84049.1| transcription termination factor Rho [Alteromonas macleodii AltDE1]
Length = 421
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/349 (71%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI++VN +KPE S+N+ LF+NLTPLH L +ER S E+IT R++
Sbjct: 103 PPKDSERYFALLKIREVNFDKPENSRNKILFENLTPLHAADRLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEM R
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTLLLQNIAQSIAANHPDCELMVLLIDERPEEVTEMHRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VQGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTAQDELQKMWILRKIVHEMS 391
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEM R V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPDCELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R RKQ+++F+I K K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGLENMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+ ERYFALLKI++VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVNFDKPENSRNKIL 132
>gi|406595397|ref|YP_006746527.1| transcription termination factor Rho [Alteromonas macleodii ATCC
27126]
gi|407682330|ref|YP_006797504.1| transcription termination factor Rho [Alteromonas macleodii str.
'English Channel 673']
gi|407686251|ref|YP_006801424.1| transcription termination factor Rho [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|406372718|gb|AFS35973.1| transcription termination factor Rho [Alteromonas macleodii ATCC
27126]
gi|407243941|gb|AFT73127.1| transcription termination factor Rho [Alteromonas macleodii str.
'English Channel 673']
gi|407289631|gb|AFT93943.1| transcription termination factor Rho [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 421
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/349 (71%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI++VN +KPE S+N+ LF+NLTPLH L +ER S E+IT R++
Sbjct: 103 PPKDSERYFALLKIREVNFDKPENSRNKILFENLTPLHAADRLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEM R
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTLLLQNIAQSIAANHPDCELMVLLIDERPEEVTEMHRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VQGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTAQDELQKMWILRKIVHEMS 391
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEM R V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPDCELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R RKQ+++F+I K K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGLENMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+ ERYFALLKI++VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVNFDKPENSRNKIL 132
>gi|401677020|ref|ZP_10809000.1| transcription termination factor Rho [Enterobacter sp. SST3]
gi|401765732|ref|YP_006580739.1| transcription termination factor Rho [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400177266|gb|AFP72115.1| transcription termination factor Rho [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400215774|gb|EJO46680.1| transcription termination factor Rho [Enterobacter sp. SST3]
Length = 419
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENSRNKIL 132
>gi|242237662|ref|YP_002985843.1| transcription termination factor Rho [Dickeya dadantii Ech703]
gi|242129719|gb|ACS84021.1| transcription termination factor Rho [Dickeya dadantii Ech703]
Length = 419
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|195940644|ref|ZP_03086026.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4024]
gi|261343047|ref|ZP_05970905.1| transcription termination factor Rho [Enterobacter cancerogenus
ATCC 35316]
gi|296105327|ref|YP_003615473.1| transcription termination factor Rho [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|334126167|ref|ZP_08500146.1| transcription termination factor Rho [Enterobacter hormaechei ATCC
49162]
gi|354721328|ref|ZP_09035543.1| transcription termination factor Rho [Enterobacter mori LMG 25706]
gi|365846100|ref|ZP_09386606.1| transcription termination factor Rho [Yokenella regensburgei ATCC
43003]
gi|392981258|ref|YP_006479846.1| transcription termination factor Rho [Enterobacter cloacae subsp.
dissolvens SDM]
gi|440289660|ref|YP_007342425.1| transcription termination factor Rho [Enterobacteriaceae bacterium
strain FGI 57]
gi|288314612|gb|EFC53550.1| transcription termination factor Rho [Enterobacter cancerogenus
ATCC 35316]
gi|295059786|gb|ADF64524.1| transcription termination factor Rho [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295095194|emb|CBK84284.1| transcription termination factor Rho [Enterobacter cloacae subsp.
cloacae NCTC 9394]
gi|333385827|gb|EGK57053.1| transcription termination factor Rho [Enterobacter hormaechei ATCC
49162]
gi|364574447|gb|EHM51907.1| transcription termination factor Rho [Yokenella regensburgei ATCC
43003]
gi|392327191|gb|AFM62144.1| transcription termination factor Rho [Enterobacter cloacae subsp.
dissolvens SDM]
gi|440049182|gb|AGB80240.1| transcription termination factor Rho [Enterobacteriaceae bacterium
strain FGI 57]
Length = 419
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENSRNKIL 132
>gi|393763622|ref|ZP_10352239.1| transcription termination factor Rho [Alishewanella agri BL06]
gi|397171569|ref|ZP_10494971.1| transcription termination factor Rho [Alishewanella aestuarii B11]
gi|392605390|gb|EIW88284.1| transcription termination factor Rho [Alishewanella agri BL06]
gi|396086858|gb|EJI84466.1| transcription termination factor Rho [Alishewanella aestuarii B11]
Length = 421
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/351 (71%), Positives = 302/351 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G IR
Sbjct: 43 AKNGEEIYGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN KPE ++N+ LF+NLTPLH L +ER S+E+IT R++
Sbjct: 103 PPKEGERYFALLKVSEVNFGKPEQARNKILFENLTPLHANSRLRMERGNGSREDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+I+LQ+IA +I NH E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTILLQNIAQSIAANHPECVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+HL R++AE+RV+PAI+ N+SGTRREELL ++LQK+W+LRK+L + T
Sbjct: 343 LHLSRKIAERRVFPAIDFNRSGTRREELLASPEELQKMWILRKILNPMDET 393
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 149/281 (53%), Gaps = 83/281 (29%)
Query: 393 SVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRS----------------- 435
++ RLRKQ+++FAI K K GE I+GDG LE+L DGFGFLRS
Sbjct: 25 NMARLRKQDIIFAILKAHAKNGEEIYGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPS 84
Query: 436 ---------------------QGSNYMA---SSDDIYLSPSQIRR---FNLHTGILWKGE 468
+G Y A S+ + P Q R F T +
Sbjct: 85 QIRRFNLRTGDSISGLIRPPKEGERYFALLKVSEVNFGKPEQARNKILFENLTPLHANSR 144
Query: 469 IRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSEAIM 516
+R+ + NG R ++ + + VA PK+GK+I+LQ+IA +I NH E ++
Sbjct: 145 LRMERGNGSREDITARVLDLAAPIGRGQRGLIVAPPKAGKTILLQNIAQSIAANHPECVL 204
Query: 517 IVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------L 549
+V+LIDERPEEVTEMQR V+GEV+ASTFDEPA L
Sbjct: 205 MVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264
Query: 550 SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFFGAAR
Sbjct: 265 DSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAAR 305
>gi|77747620|ref|NP_299976.2| transcription termination factor Rho [Xylella fastidiosa 9a5c]
Length = 426
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P+K LER S E+ITGRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRL+E KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AEKRVYPAI++N+SGTRRE+LLI+ D LQKIW+LRKLL+ +
Sbjct: 351 LHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPM 398
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 185 VSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 244
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NAL R
Sbjct: 245 ARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHR 304
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 305 PKRFFGAAR 313
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 34 VARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 93
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G IR PK+GERYFAL + +N ++ K+ IL
Sbjct: 94 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKIL 140
>gi|238892387|ref|YP_002917121.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|419765449|ref|ZP_14291686.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|238544703|dbj|BAH61054.1| transcription termination factor [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|397741713|gb|EJK88934.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 443
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 67 SKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 126
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 127 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 186
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 187 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 246
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 247 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 306
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 307 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 366
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 367 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 414
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 261 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 87/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ +K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 44 NMGLENLARMRKQDIIFAILKQHSKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 103
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 104 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 156
>gi|269103750|ref|ZP_06156447.1| transcription termination factor Rho [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163648|gb|EEZ42144.1| transcription termination factor Rho [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 419
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 305/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KP+ ++N+ LF+NLTPLH + + +ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNYDKPDNARNKILFENLTPLHANERMRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDFNRSGTRREELLAKADELQKMWILRKIVHPM 390
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 85/112 (75%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ +VN P + ++ IL
Sbjct: 81 VSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVNEVNYDKPDNARNKIL 132
>gi|423105795|ref|ZP_17093496.1| transcription termination factor Rho [Klebsiella oxytoca 10-5242]
gi|423117268|ref|ZP_17104959.1| transcription termination factor Rho [Klebsiella oxytoca 10-5245]
gi|423126704|ref|ZP_17114383.1| transcription termination factor Rho [Klebsiella oxytoca 10-5250]
gi|376376385|gb|EHS89164.1| transcription termination factor Rho [Klebsiella oxytoca 10-5245]
gi|376379656|gb|EHS92407.1| transcription termination factor Rho [Klebsiella oxytoca 10-5242]
gi|376396698|gb|EHT09337.1| transcription termination factor Rho [Klebsiella oxytoca 10-5250]
Length = 443
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 67 SKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 126
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 127 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 186
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 187 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 246
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 247 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 306
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 307 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 366
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 367 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 414
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 261 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 87/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ +K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 44 NMGLENLARMRKQDIIFAILKQHSKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 103
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 104 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 156
>gi|188993355|ref|YP_001905365.1| transcription termination factor Rho [Xanthomonas campestris pv.
campestris str. B100]
gi|167735115|emb|CAP53327.1| transcription termination factor Rho [Xanthomonas campestris pv.
campestris]
Length = 623
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 248 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 307
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 308 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 367
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 368 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 427
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 428 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 487
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 488 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 547
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 548 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 595
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 231 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 290
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 291 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 350
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 351 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 410
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 411 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 470
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 471 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 510
>gi|386817129|ref|ZP_10104347.1| transcription termination factor Rho [Thiothrix nivea DSM 5205]
gi|386421705|gb|EIJ35540.1| transcription termination factor Rho [Thiothrix nivea DSM 5205]
Length = 419
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/345 (71%), Positives = 302/345 (87%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+ DG LE+L DGFGFLRSQ S+Y+A +DDIY+SPSQIRRF L TGD + G+IR PK
Sbjct: 46 GEDIYADGVLEILQDGFGFLRSQDSSYLAGADDIYVSPSQIRRFGLRTGDTIAGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ +N E PE ++N+ F+NLTPLHP + + +ER S+E+IT R+ID++
Sbjct: 106 DNERYFALLKVDTINYEPPESARNKIAFENLTPLHPDERMRMERGNGSREDITARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQRGL++A PK+GK+I+LQ+IA +I +N+ E+ +IV+LIDERPEEVTEM R V+G
Sbjct: 166 APYGKGQRGLIIAPPKAGKTIMLQNIAQSIASNYPESYLIVLLIDERPEEVTEMSRMVQG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NAL RPKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNMEVHL
Sbjct: 286 TGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEVHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR++EKRV+PAIN+N+SGTRREELL D+LQ +WVLRK L+ +
Sbjct: 346 DRRISEKRVFPAININRSGTRREELLTTQDELQTLWVLRKFLHGM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
+A PK+GK+I+LQ+IA +I +N+ E+ +IV+LIDERPEEVTEM R V+GEV++STFDEPA
Sbjct: 177 IAPPKAGKTIMLQNIAQSIASNYPESYLIVLLIDERPEEVTEMSRMVQGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 81/111 (72%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + SV R RKQ+++FA+ K + GE I+ DG LE+L DGFGFLRSQ S+Y+A +DDIY
Sbjct: 21 LGIESVSRTRKQDIIFALLKATAQNGEDIYADGVLEILQDGFGFLRSQDSSYLAGADDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
+SPSQIRRF L TG G+IR PK+ ERYFALLK+ +N P+S ++ I
Sbjct: 81 VSPSQIRRFGLRTGDTIAGKIRPPKDNERYFALLKVDTINYEPPESARNKI 131
>gi|290513185|ref|ZP_06552547.1| transcription termination factor Rho [Klebsiella sp. 1_1_55]
gi|289774396|gb|EFD82402.1| transcription termination factor Rho [Klebsiella sp. 1_1_55]
Length = 443
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 67 SKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 126
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 127 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 186
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 187 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 246
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 247 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 306
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 307 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 366
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 367 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 414
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 261 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 87/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ +K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 44 NMGLENLARMRKQDIIFAILKQHSKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 103
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 104 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 156
>gi|15603785|ref|NP_246859.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. Pm70]
gi|378775021|ref|YP_005177264.1| transcription termination factor Rho [Pasteurella multocida 36950]
gi|386835033|ref|YP_006240350.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. 3480]
gi|417854814|ref|ZP_12500083.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|421264688|ref|ZP_15715655.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425064624|ref|ZP_18467749.1| Transcription termination factor Rho [Pasteurella multocida subsp.
gallicida X73]
gi|425066791|ref|ZP_18469911.1| Transcription termination factor Rho [Pasteurella multocida subsp.
gallicida P1059]
gi|12722354|gb|AAK04004.1| Rho [Pasteurella multocida subsp. multocida str. Pm70]
gi|338217323|gb|EGP03208.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|356597569|gb|AET16295.1| transcription termination factor Rho [Pasteurella multocida 36950]
gi|385201736|gb|AFI46591.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. 3480]
gi|401687959|gb|EJS83649.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404380577|gb|EJZ77067.1| Transcription termination factor Rho [Pasteurella multocida subsp.
gallicida P1059]
gi|404380810|gb|EJZ77299.1| Transcription termination factor Rho [Pasteurella multocida subsp.
gallicida X73]
Length = 420
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNYPECELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L+ +
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTSPDELQKMWILRKILHPM 391
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 139/283 (49%), Positives = 170/283 (60%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+S
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFNL TG +G+IR PK GERYFALLK+ +VN
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHAN 143
Query: 489 ---------------------VASP-------------KSGKSIILQHIAHAITTNHSEA 514
+ASP K+GK+++LQ+IA +IT N+ E
Sbjct: 144 SRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNYPEC 203
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 204 ELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVI 263
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 264 LLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|423122987|ref|ZP_17110671.1| transcription termination factor Rho [Klebsiella oxytoca 10-5246]
gi|376391740|gb|EHT04410.1| transcription termination factor Rho [Klebsiella oxytoca 10-5246]
Length = 443
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 67 SKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 126
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 127 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 186
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 187 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 246
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 247 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 306
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 307 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 366
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 367 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 414
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 261 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 87/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ +K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 44 NMGLENLARMRKQDIIFAILKQHSKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 103
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 104 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 156
>gi|62182392|ref|YP_218809.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|375116739|ref|ZP_09761909.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|375125398|ref|ZP_09770562.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|379703170|ref|YP_005244898.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|409247599|ref|YP_006888295.1| Transcription termination factor rho ATP-dependent helicase rho
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|62130025|gb|AAX67728.1| transcription termination factor Rho; polarity suppressor
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|320088333|emb|CBY98093.1| Transcription termination factor rho ATP-dependent helicase rho
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|322716885|gb|EFZ08456.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|323132269|gb|ADX19699.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|326629648|gb|EGE35991.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
Length = 443
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 68 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 127
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 128 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 187
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 188 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 247
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 248 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 307
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 308 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 367
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 368 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 414
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 261 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 47 LENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 106
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 107 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 156
>gi|86148271|ref|ZP_01066567.1| transcription termination factor Rho [Vibrio sp. MED222]
gi|85833967|gb|EAQ52129.1| transcription termination factor Rho [Vibrio sp. MED222]
Length = 419
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 305/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++E + E+IT RI+
Sbjct: 103 PPKDGERYFALLKVNTVNYDKPDNARNKILFENLTPLHANERMVMEAGNGATEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKNDELQKMWILRKIVHPM 390
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 79/105 (75%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
RLRKQ+++F+I K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK+GERYFALLK+ VN P + ++ IL
Sbjct: 88 RFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPDNARNKIL 132
>gi|443473832|ref|ZP_21063853.1| Transcription termination factor Rho [Pseudomonas pseudoalcaligenes
KF707]
gi|442904767|gb|ELS29682.1| Transcription termination factor Rho [Pseudomonas pseudoalcaligenes
KF707]
Length = 419
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 254/348 (72%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E++TGR+I
Sbjct: 103 PPKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+
Sbjct: 163 DLCAPIGKGQRGLIVAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+ L+RR+AEKRV+PAIN+NKSGTRREELL +D+LQ++W+LRKLL+ +
Sbjct: 343 LPLDRRIAEKRVFPAININKSGTRREELLTAEDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>gi|152972776|ref|YP_001337922.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206576949|ref|YP_002241150.1| transcription termination factor Rho [Klebsiella pneumoniae 342]
gi|262040902|ref|ZP_06014128.1| transcription termination factor rho [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288937789|ref|YP_003441848.1| transcription termination factor Rho [Klebsiella variicola At-22]
gi|330012117|ref|ZP_08307279.1| transcription termination factor Rho [Klebsiella sp. MS 92-3]
gi|336248051|ref|YP_004591761.1| transcription termination factor Rho [Enterobacter aerogenes KCTC
2190]
gi|365144547|ref|ZP_09348763.1| transcription termination factor Rho [Klebsiella sp. 4_1_44FAA]
gi|375258307|ref|YP_005017477.1| transcription termination factor Rho [Klebsiella oxytoca KCTC 1686]
gi|378976289|ref|YP_005224430.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386037409|ref|YP_005957322.1| transcription termination factor Rho [Klebsiella pneumoniae KCTC
2242]
gi|397655246|ref|YP_006495948.1| transcription termination factor Rho [Klebsiella oxytoca E718]
gi|402783097|ref|YP_006638643.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|402841850|ref|ZP_10890288.1| transcription termination factor Rho [Klebsiella sp. OBRC7]
gi|419976079|ref|ZP_14491481.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419981856|ref|ZP_14497126.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987386|ref|ZP_14502506.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419992956|ref|ZP_14507905.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419999236|ref|ZP_14514014.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420005005|ref|ZP_14519635.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420010598|ref|ZP_14525069.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420016838|ref|ZP_14531125.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420022239|ref|ZP_14536410.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420027901|ref|ZP_14541888.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420033655|ref|ZP_14547457.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420039288|ref|ZP_14552924.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420045163|ref|ZP_14558634.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420051093|ref|ZP_14564384.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056725|ref|ZP_14569877.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061788|ref|ZP_14574771.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420068111|ref|ZP_14580896.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420073536|ref|ZP_14586161.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420079341|ref|ZP_14591788.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085860|ref|ZP_14598065.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421724774|ref|ZP_16163982.1| transcription termination factor Rho [Klebsiella oxytoca M5al]
gi|421908841|ref|ZP_16338673.1| Transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421917197|ref|ZP_16346759.1| Transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|423111256|ref|ZP_17098951.1| transcription termination factor Rho [Klebsiella oxytoca 10-5243]
gi|424833237|ref|ZP_18257965.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424930923|ref|ZP_18349295.1| Transcription termination factor Rho (ATP-dependent helicase Rho)
[Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|425079011|ref|ZP_18482113.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425084032|ref|ZP_18487129.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425084658|ref|ZP_18487751.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425094061|ref|ZP_18497144.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428149259|ref|ZP_18997084.1| Transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428934268|ref|ZP_19007794.1| transcription termination factor Rho [Klebsiella pneumoniae JHCK1]
gi|428942930|ref|ZP_19015884.1| transcription termination factor Rho [Klebsiella pneumoniae VA360]
gi|444353839|ref|YP_007389983.1| Transcription termination factor Rho [Enterobacter aerogenes
EA1509E]
gi|449050205|ref|ZP_21731617.1| transcription termination factor Rho [Klebsiella pneumoniae hvKP1]
gi|150957625|gb|ABR79655.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206566007|gb|ACI07783.1| transcription termination factor Rho [Klebsiella pneumoniae 342]
gi|259041791|gb|EEW42836.1| transcription termination factor rho [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288892498|gb|ADC60816.1| transcription termination factor Rho [Klebsiella variicola At-22]
gi|328533932|gb|EGF60591.1| transcription termination factor Rho [Klebsiella sp. MS 92-3]
gi|334734107|gb|AEG96482.1| transcription termination factor Rho [Enterobacter aerogenes KCTC
2190]
gi|339764537|gb|AEK00758.1| transcription termination factor Rho [Klebsiella pneumoniae KCTC
2242]
gi|363647970|gb|EHL87157.1| transcription termination factor Rho [Klebsiella sp. 4_1_44FAA]
gi|364515700|gb|AEW58828.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|365907785|gb|AEX03238.1| transcription termination factor Rho [Klebsiella oxytoca KCTC 1686]
gi|376377028|gb|EHS89802.1| transcription termination factor Rho [Klebsiella oxytoca 10-5243]
gi|394343976|gb|AFN30097.1| Transcription termination factor Rho [Klebsiella oxytoca E718]
gi|397341341|gb|EJJ34521.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397341983|gb|EJJ35152.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397344671|gb|EJJ37802.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397358629|gb|EJJ51345.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397359570|gb|EJJ52263.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397363658|gb|EJJ56296.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397374462|gb|EJJ66798.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397378295|gb|EJJ70508.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397385062|gb|EJJ77167.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397392612|gb|EJJ84400.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397394613|gb|EJJ86339.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403264|gb|EJJ94841.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397409813|gb|EJK01113.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397410183|gb|EJK01470.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397420229|gb|EJK11315.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397427039|gb|EJK17830.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397429841|gb|EJK20547.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397437869|gb|EJK28412.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397443861|gb|EJK34162.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397448776|gb|EJK38941.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402282008|gb|EJU30625.1| transcription termination factor Rho [Klebsiella sp. OBRC7]
gi|402543934|gb|AFQ68083.1| Transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405589291|gb|EKB62861.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405597642|gb|EKB70905.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405608896|gb|EKB81819.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405610223|gb|EKB83032.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407805110|gb|EKF76361.1| Transcription termination factor Rho (ATP-dependent helicase Rho)
[Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410117208|emb|CCM81298.1| Transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410120445|emb|CCM89384.1| Transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|410374448|gb|EKP29121.1| transcription termination factor Rho [Klebsiella oxytoca M5al]
gi|414710687|emb|CCN32391.1| transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426297701|gb|EKV60171.1| transcription termination factor Rho [Klebsiella pneumoniae VA360]
gi|426303247|gb|EKV65424.1| transcription termination factor Rho [Klebsiella pneumoniae JHCK1]
gi|427540789|emb|CCM93222.1| Transcription termination factor Rho [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|443904669|emb|CCG32443.1| Transcription termination factor Rho [Enterobacter aerogenes
EA1509E]
gi|448876607|gb|EMB11592.1| transcription termination factor Rho [Klebsiella pneumoniae hvKP1]
Length = 419
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 SKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 87/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ +K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHSKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|85060364|ref|YP_456066.1| transcription termination factor Rho [Sodalis glossinidius str.
'morsitans']
gi|84780884|dbj|BAE75661.1| transcription termination factor Rho [Sodalis glossinidius str.
'morsitans']
Length = 419
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|383311042|ref|YP_005363852.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. HN06]
gi|380872314|gb|AFF24681.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. HN06]
Length = 399
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 23 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 82
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 83 PPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 142
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 143 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNYPECELIVLLIDERPEEVTEMQRS 202
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 203 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 262
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 263 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 322
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L+ +
Sbjct: 323 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTSPDELQKMWILRKILHPM 370
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/283 (49%), Positives = 170/283 (60%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+S
Sbjct: 3 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 62
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFNL TG +G+IR PK GERYFALLK+ +VN
Sbjct: 63 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHAN 122
Query: 489 ---------------------VASP-------------KSGKSIILQHIAHAITTNHSEA 514
+ASP K+GK+++LQ+IA +IT N+ E
Sbjct: 123 SRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNYPEC 182
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 183 ELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVI 242
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 243 LLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 285
>gi|348028071|ref|YP_004870757.1| transcription termination factor Rho [Glaciecola nitratireducens
FR1064]
gi|347945414|gb|AEP28764.1| transcription termination factor Rho [Glaciecola nitratireducens
FR1064]
Length = 421
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/349 (72%), Positives = 304/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGGGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI +VN +KPE S+N+ LF+NLTPLH + LER S E+IT R++
Sbjct: 103 PPKDSERYFALLKISEVNFDKPENSRNKILFENLTPLHANERFRLERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA +I NH EA ++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPEAQLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VQGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R+++EKRV+PAI++N+SGTRREELL D+LQK+W+LRK+++ +T
Sbjct: 343 LHLNRKISEKRVFPAIDINRSGTRREELLTTPDELQKMWILRKIVHDMT 391
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH EA ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPEAQLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 92/131 (70%), Gaps = 2/131 (1%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LKD + +++ + + LE ++ R RKQ+++F+I K K GE IFG G LE+L DG
Sbjct: 4 NELKDKPISELVSLSSEMGLE--NLARARKQDIIFSILKSHAKGGEDIFGGGVLEILQDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+ ERYFALLKI +VN
Sbjct: 62 FGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKDSERYFALLKISEVNF 121
Query: 490 ASPKSGKSIIL 500
P++ ++ IL
Sbjct: 122 DKPENSRNKIL 132
>gi|452744754|ref|ZP_21944595.1| transcription termination factor Rho [Mannheimia haemolytica
serotype 6 str. H23]
gi|452087172|gb|EME03554.1| transcription termination factor Rho [Mannheimia haemolytica
serotype 6 str. H23]
Length = 420
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 300/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE S+++ LF+NLTPLH L +ER SKE++T RI+
Sbjct: 104 PPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQR L+VA PK+GK+++LQ+IA +IT NH E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 224 VRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPVSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AE+R++PAI+ N+SGTR+++LL+ D+LQK W+LRK+L +
Sbjct: 344 LHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPM 391
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 171/293 (58%), Gaps = 83/293 (28%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNY 440
L E + + ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y
Sbjct: 14 LVEMGENQMGLENLARLRKQDIVFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSSDSSY 73
Query: 441 MASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL------------------- 481
+A DDIY+SPSQIRRFNL TG +G+IR PK GERYFAL
Sbjct: 74 LAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDSVNDDKPEASRSKIL 133
Query: 482 ------------LKIKKVN-------------------------VASPKSGKSIILQHIA 504
LK+++ N VA PK+GK+++LQ+IA
Sbjct: 134 FENLTPLHANSRLKMERGNGSKEDLTARILDLAAPIGKGQRALIVAPPKAGKTVLLQNIA 193
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------- 548
+IT NH E +IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 194 QSITHNHPECELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKR 253
Query: 549 -----------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 254 SVEHKKDVVILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|336314813|ref|ZP_08569728.1| transcription termination factor Rho [Rheinheimera sp. A13L]
gi|335880872|gb|EGM78756.1| transcription termination factor Rho [Rheinheimera sp. A13L]
Length = 422
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/351 (70%), Positives = 302/351 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG +E+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G IR
Sbjct: 43 AKNGEEIFGDGVVEILTDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +PE ++N+ LF+NLTPLH L +ER SKE+IT R++
Sbjct: 103 PPKEGERYFALLKVNEVNFGRPEQARNKILFENLTPLHANSRLRMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+I+LQ+IA +I NH E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTILLQNIAQSIAANHPECVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+HL R++AE+R++PAI N+SGTRREELL ++LQK+W+LRK+L+ + T
Sbjct: 343 LHLSRKIAERRIFPAIEFNRSGTRREELLASPEELQKMWILRKILHPMDET 393
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 148/293 (50%), Gaps = 87/293 (29%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSL 423
LAE+ ++ ++ RLRKQ+++FAI K K GE IFG D S
Sbjct: 17 LAESMGLE----NMARLRKQDIIFAILKSHAKNGEEIFGDGVVEILTDGFGFLRSSDSSY 72
Query: 424 EVLPDGF-------------------GFLR--SQGSNYMA---SSDDIYLSPSQIRR--- 456
PD G +R +G Y A ++ + P Q R
Sbjct: 73 LAGPDDIYVSPSQIRRFNLRTGDTISGLIRPPKEGERYFALLKVNEVNFGRPEQARNKIL 132
Query: 457 FNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIA 504
F T + +R+ + NG + ++ + + VA PK+GK+I+LQ+IA
Sbjct: 133 FENLTPLHANSRLRMERGNGSKEDITARVLDLASPIGRGQRGLIVAPPKAGKTILLQNIA 192
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------- 548
+I NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 193 QSIAANHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252
Query: 549 -----------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFFGAAR
Sbjct: 253 LVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAAR 305
>gi|26250521|ref|NP_756561.1| transcription termination factor Rho [Escherichia coli CFT073]
gi|91213304|ref|YP_543290.1| transcription termination factor Rho [Escherichia coli UTI89]
gi|110644109|ref|YP_671839.1| transcription termination factor Rho [Escherichia coli 536]
gi|110807528|ref|YP_691048.1| transcription termination factor Rho [Shigella flexneri 5 str.
8401]
gi|117626043|ref|YP_859366.1| transcription termination factor Rho [Escherichia coli APEC O1]
gi|237702792|ref|ZP_04533273.1| transcription termination factor rho [Escherichia sp. 3_2_53FAA]
gi|331644516|ref|ZP_08345636.1| transcription termination factor Rho [Escherichia coli H736]
gi|331649607|ref|ZP_08350689.1| transcription termination factor Rho [Escherichia coli M605]
gi|331655466|ref|ZP_08356459.1| transcription termination factor Rho [Escherichia coli M718]
gi|331675252|ref|ZP_08376003.1| transcription termination factor Rho [Escherichia coli TA280]
gi|331679891|ref|ZP_08380554.1| transcription termination factor Rho [Escherichia coli H591]
gi|332282710|ref|ZP_08395123.1| transcription termination factor rho [Shigella sp. D9]
gi|384545385|ref|YP_005729449.1| Transcription termination factor rho [Shigella flexneri 2002017]
gi|386631720|ref|YP_006151440.1| transcription termination factor Rho [Escherichia coli str. 'clone
D i2']
gi|386636640|ref|YP_006156359.1| transcription termination factor Rho [Escherichia coli str. 'clone
D i14']
gi|386641418|ref|YP_006108216.1| transcription termination factor Rho [Escherichia coli ABU 83972]
gi|387619077|ref|YP_006122099.1| transcription termination factor Rho [Escherichia coli O83:H1 str.
NRG 857C]
gi|387831675|ref|YP_003351612.1| transcription termination factor Rho [Escherichia coli SE15]
gi|424839908|ref|ZP_18264545.1| transcription termination factor Rho [Shigella flexneri 5a str.
M90T]
gi|26110951|gb|AAN83135.1|AE016769_250 Transcription termination factor rho [Escherichia coli CFT073]
gi|91074878|gb|ABE09759.1| transcription termination factor rho [Escherichia coli UTI89]
gi|110345701|gb|ABG71938.1| transcription termination factor rho [Escherichia coli 536]
gi|110617076|gb|ABF05743.1| transcription termination factor Rho [Shigella flexneri 5 str.
8401]
gi|115515167|gb|ABJ03242.1| transcription termination factor Rho [Escherichia coli APEC O1]
gi|226902963|gb|EEH89222.1| transcription termination factor rho [Escherichia sp. 3_2_53FAA]
gi|281180832|dbj|BAI57162.1| transcription termination factor Rho [Escherichia coli SE15]
gi|281603172|gb|ADA76156.1| Transcription termination factor rho [Shigella flexneri 2002017]
gi|307555910|gb|ADN48685.1| transcription termination factor Rho [Escherichia coli ABU 83972]
gi|312948338|gb|ADR29165.1| transcription termination factor Rho [Escherichia coli O83:H1 str.
NRG 857C]
gi|331036188|gb|EGI08423.1| transcription termination factor Rho [Escherichia coli H736]
gi|331041477|gb|EGI13625.1| transcription termination factor Rho [Escherichia coli M605]
gi|331046787|gb|EGI18871.1| transcription termination factor Rho [Escherichia coli M718]
gi|331067538|gb|EGI38942.1| transcription termination factor Rho [Escherichia coli TA280]
gi|331072438|gb|EGI43770.1| transcription termination factor Rho [Escherichia coli H591]
gi|332105062|gb|EGJ08408.1| transcription termination factor rho [Shigella sp. D9]
gi|355422619|gb|AER86816.1| transcription termination factor Rho [Escherichia coli str. 'clone
D i2']
gi|355427539|gb|AER91735.1| transcription termination factor Rho [Escherichia coli str. 'clone
D i14']
gi|383468960|gb|EID63981.1| transcription termination factor Rho [Shigella flexneri 5a str.
M90T]
Length = 443
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 68 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 127
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 128 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 187
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 188 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 247
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 248 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 307
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 308 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 367
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 368 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 414
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 261 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 44 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 103
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 104 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 156
>gi|346726605|ref|YP_004853274.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346651352|gb|AEO43976.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 624
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 249 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 308
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 309 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 368
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 369 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 428
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 429 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 488
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 489 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 548
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 549 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 596
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 232 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 291
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 292 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 351
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 352 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 411
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 412 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 471
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 472 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 511
>gi|146313635|ref|YP_001178709.1| transcription termination factor Rho [Enterobacter sp. 638]
gi|145320511|gb|ABP62658.1| transcription termination factor Rho [Enterobacter sp. 638]
Length = 419
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENSRNKIL 132
>gi|400405040|ref|YP_006587899.1| transcription termination factor Rho [secondary endosymbiont of
Ctenarytaina eucalypti]
gi|400363403|gb|AFP84471.1| transcription termination factor Rho [secondary endosymbiont of
Ctenarytaina eucalypti]
Length = 419
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVI+LLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIVLLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTNQEELQKMWILRKIIHPM 390
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIVLLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 83/108 (76%)
Query: 393 SVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPS 452
++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPS
Sbjct: 25 NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPS 84
Query: 453 QIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
QIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 85 QIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|237727906|ref|ZP_04558387.1| transcription termination factor Rho [Citrobacter sp. 30_2]
gi|226910355|gb|EEH96273.1| transcription termination factor Rho [Citrobacter sp. 30_2]
Length = 443
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 68 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 127
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 128 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 187
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 188 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 247
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 248 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 307
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 308 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 367
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 368 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 414
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 261 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 44 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 103
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 104 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 156
>gi|16762213|ref|NP_457830.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16767192|ref|NP_462807.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29143702|ref|NP_807044.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56415776|ref|YP_152851.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161505566|ref|YP_001572678.1| transcription termination factor Rho [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|161617034|ref|YP_001590999.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167553314|ref|ZP_02347064.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167994612|ref|ZP_02575703.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234237|ref|ZP_02659295.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168238373|ref|ZP_02663431.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244968|ref|ZP_02669900.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168263192|ref|ZP_02685165.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168467667|ref|ZP_02701504.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168822971|ref|ZP_02834971.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444899|ref|YP_002043154.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194450354|ref|YP_002047937.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194469338|ref|ZP_03075322.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194736430|ref|YP_002116852.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197249760|ref|YP_002148846.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197264201|ref|ZP_03164275.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197364706|ref|YP_002144343.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198243711|ref|YP_002217854.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200388193|ref|ZP_03214805.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204930193|ref|ZP_03221170.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205354513|ref|YP_002228314.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207859128|ref|YP_002245779.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213021585|ref|ZP_03336032.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213051687|ref|ZP_03344565.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213426567|ref|ZP_03359317.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213648369|ref|ZP_03378422.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213856932|ref|ZP_03384172.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224585739|ref|YP_002639538.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238912926|ref|ZP_04656763.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289825738|ref|ZP_06544906.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|340001375|ref|YP_004732259.1| transcription termination factor [Salmonella bongori NCTC 12419]
gi|374979421|ref|ZP_09720757.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|375003785|ref|ZP_09728123.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375121373|ref|ZP_09766540.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|378447266|ref|YP_005234898.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|378452819|ref|YP_005240179.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378701788|ref|YP_005183746.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378957109|ref|YP_005214596.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|378961553|ref|YP_005219039.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|378986611|ref|YP_005249767.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378991210|ref|YP_005254374.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|383498533|ref|YP_005399222.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386589289|ref|YP_006085689.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|416427269|ref|ZP_11693448.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416434903|ref|ZP_11697924.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416436832|ref|ZP_11698500.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416447449|ref|ZP_11705857.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416454743|ref|ZP_11710464.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416457522|ref|ZP_11712237.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416464081|ref|ZP_11716216.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416475410|ref|ZP_11720633.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416489310|ref|ZP_11726140.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416496539|ref|ZP_11729165.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416507836|ref|ZP_11735662.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416517578|ref|ZP_11739561.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416529308|ref|ZP_11744275.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416540083|ref|ZP_11750257.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416547072|ref|ZP_11754361.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416561982|ref|ZP_11761828.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416568701|ref|ZP_11765002.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416574840|ref|ZP_11768009.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416587425|ref|ZP_11776035.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416594758|ref|ZP_11780575.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416596051|ref|ZP_11781145.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416606134|ref|ZP_11787529.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416613382|ref|ZP_11792016.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416624037|ref|ZP_11797781.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416632751|ref|ZP_11801478.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416639313|ref|ZP_11804447.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416649642|ref|ZP_11810014.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416660807|ref|ZP_11815242.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416668646|ref|ZP_11819033.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416678433|ref|ZP_11822660.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416690414|ref|ZP_11825865.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416704555|ref|ZP_11830309.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416710642|ref|ZP_11834670.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416717820|ref|ZP_11840061.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416723373|ref|ZP_11844085.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416728997|ref|ZP_11847733.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416742397|ref|ZP_11855779.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416748175|ref|ZP_11858566.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416759506|ref|ZP_11864337.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416764243|ref|ZP_11867878.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416772733|ref|ZP_11873432.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|417436627|ref|ZP_12161677.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|417471000|ref|ZP_12167067.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|418486104|ref|ZP_13055078.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418489020|ref|ZP_13056352.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418496808|ref|ZP_13063237.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418499739|ref|ZP_13066143.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418506042|ref|ZP_13072382.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418507130|ref|ZP_13073455.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418513676|ref|ZP_13079901.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418526451|ref|ZP_13092427.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418762251|ref|ZP_13318382.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418764346|ref|ZP_13320446.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418773168|ref|ZP_13329159.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418777963|ref|ZP_13333884.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418779110|ref|ZP_13335016.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418785604|ref|ZP_13341434.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418791418|ref|ZP_13347180.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418795964|ref|ZP_13351660.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418797764|ref|ZP_13353447.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418802650|ref|ZP_13358276.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418807096|ref|ZP_13362662.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418811257|ref|ZP_13366791.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418818494|ref|ZP_13373965.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418821037|ref|ZP_13376463.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418826279|ref|ZP_13381522.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418829024|ref|ZP_13384016.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418836021|ref|ZP_13390911.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418843005|ref|ZP_13397811.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418847551|ref|ZP_13402305.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418851608|ref|ZP_13406318.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418855076|ref|ZP_13409738.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859178|ref|ZP_13413785.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418861949|ref|ZP_13416497.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418865877|ref|ZP_13420343.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419729913|ref|ZP_14256868.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419733462|ref|ZP_14260360.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419740317|ref|ZP_14267048.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419744862|ref|ZP_14271511.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419747579|ref|ZP_14274088.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419790229|ref|ZP_14315904.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419792691|ref|ZP_14318322.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421359328|ref|ZP_15809623.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421361250|ref|ZP_15811515.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369180|ref|ZP_15819363.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370063|ref|ZP_15820234.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421375129|ref|ZP_15825243.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421381807|ref|ZP_15831861.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421383655|ref|ZP_15833689.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421388220|ref|ZP_15838212.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421395376|ref|ZP_15845313.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421399755|ref|ZP_15849649.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421401702|ref|ZP_15851569.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421408880|ref|ZP_15858678.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421410828|ref|ZP_15860600.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421417888|ref|ZP_15867596.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421420179|ref|ZP_15869858.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421424317|ref|ZP_15873961.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421428833|ref|ZP_15878436.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421436075|ref|ZP_15885609.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438499|ref|ZP_15887995.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421442459|ref|ZP_15891909.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421447184|ref|ZP_15896587.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421568587|ref|ZP_16014303.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573185|ref|ZP_16018826.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421577858|ref|ZP_16023442.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421585450|ref|ZP_16030948.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|421882911|ref|ZP_16314160.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|422028159|ref|ZP_16374475.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422033209|ref|ZP_16379292.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|423142406|ref|ZP_17130044.1| transcription termination factor Rho [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|427556381|ref|ZP_18929798.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427573817|ref|ZP_18934389.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427595394|ref|ZP_18939303.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427622267|ref|ZP_18944819.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427643411|ref|ZP_18949073.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427658177|ref|ZP_18953798.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427663434|ref|ZP_18958699.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427680319|ref|ZP_18963592.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427801471|ref|ZP_18969034.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|436595146|ref|ZP_20512442.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436660086|ref|ZP_20517108.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436801205|ref|ZP_20524798.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436806483|ref|ZP_20526691.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436813856|ref|ZP_20532037.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436845987|ref|ZP_20539045.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436847362|ref|ZP_20539738.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436860002|ref|ZP_20547823.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867053|ref|ZP_20552453.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436868680|ref|ZP_20553339.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436876256|ref|ZP_20557737.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436890191|ref|ZP_20565777.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436898444|ref|ZP_20570442.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436901998|ref|ZP_20572881.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436908563|ref|ZP_20575792.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436917049|ref|ZP_20580637.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436922722|ref|ZP_20584728.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436937805|ref|ZP_20592908.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436940109|ref|ZP_20594146.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436948437|ref|ZP_20598672.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436958520|ref|ZP_20603195.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436967302|ref|ZP_20607245.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436976246|ref|ZP_20611731.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436994459|ref|ZP_20618872.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437008890|ref|ZP_20623625.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437014228|ref|ZP_20625429.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437026402|ref|ZP_20629765.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437037451|ref|ZP_20634227.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437054313|ref|ZP_20643077.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061319|ref|ZP_20646873.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437063032|ref|ZP_20647761.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437071928|ref|ZP_20652183.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437083489|ref|ZP_20659163.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437092225|ref|ZP_20663751.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437098932|ref|ZP_20665619.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437119117|ref|ZP_20670738.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437131505|ref|ZP_20677408.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437139378|ref|ZP_20681788.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437142308|ref|ZP_20683654.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437149690|ref|ZP_20688259.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437158372|ref|ZP_20693281.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437165085|ref|ZP_20697413.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437173664|ref|ZP_20701856.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184929|ref|ZP_20708656.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437200555|ref|ZP_20711694.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437257256|ref|ZP_20715848.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437265041|ref|ZP_20720238.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437273575|ref|ZP_20724744.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437284259|ref|ZP_20729463.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437318886|ref|ZP_20738167.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437320994|ref|ZP_20738473.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437342249|ref|ZP_20745265.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437395579|ref|ZP_20751361.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437419314|ref|ZP_20754346.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437439007|ref|ZP_20757059.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437463833|ref|ZP_20763387.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437472362|ref|ZP_20765461.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437487601|ref|ZP_20769937.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437508119|ref|ZP_20776193.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437548341|ref|ZP_20783302.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437569686|ref|ZP_20787994.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437582237|ref|ZP_20792288.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437599724|ref|ZP_20796973.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437620776|ref|ZP_20804266.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437630191|ref|ZP_20806192.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437656149|ref|ZP_20810657.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437674589|ref|ZP_20816588.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437689521|ref|ZP_20820105.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437703323|ref|ZP_20824449.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437728236|ref|ZP_20830455.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437755409|ref|ZP_20834228.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437809257|ref|ZP_20840553.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437817922|ref|ZP_20842806.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|438088871|ref|ZP_20860086.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438102085|ref|ZP_20864792.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438107446|ref|ZP_20866753.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438124329|ref|ZP_20872559.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|440761689|ref|ZP_20940759.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440762806|ref|ZP_20941857.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440766606|ref|ZP_20945595.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771695|ref|ZP_20950608.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445130906|ref|ZP_21381516.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445141928|ref|ZP_21385715.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445150470|ref|ZP_21389757.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445173887|ref|ZP_21396818.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445183890|ref|ZP_21398786.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445227318|ref|ZP_21404243.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445240822|ref|ZP_21407583.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445328649|ref|ZP_21413136.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445345167|ref|ZP_21418041.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445358892|ref|ZP_21422924.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|452122299|ref|YP_007472547.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|61230321|sp|P0A295.1|RHO_SALTY RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|61230322|sp|P0A296.1|RHO_SALTI RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|25299648|pir||AE0922 transcription termination factor STY3638 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|6960280|gb|AAF33470.1| S. typhimurium transcription termination factor (RHO) (SP:P26980)
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|16422485|gb|AAL22766.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16504517|emb|CAD09399.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139337|gb|AAO70904.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56130033|gb|AAV79539.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|160866913|gb|ABX23536.1| hypothetical protein SARI_03736 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|161366398|gb|ABX70166.1| hypothetical protein SPAB_04862 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403562|gb|ACF63784.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194408658|gb|ACF68877.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455702|gb|EDX44541.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194711932|gb|ACF91153.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195630005|gb|EDX48665.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197096183|emb|CAR61779.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197213463|gb|ACH50860.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197242456|gb|EDY25076.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288790|gb|EDY28165.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197938227|gb|ACH75560.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199605291|gb|EDZ03836.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320597|gb|EDZ05799.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205274294|emb|CAR39315.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205322225|gb|EDZ10064.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327557|gb|EDZ14321.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331810|gb|EDZ18574.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205336257|gb|EDZ23021.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205340701|gb|EDZ27465.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205348063|gb|EDZ34694.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206710931|emb|CAR35297.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224470267|gb|ACN48097.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261249045|emb|CBG26905.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996198|gb|ACY91083.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301160437|emb|CBW19966.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312915040|dbj|BAJ39014.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321225442|gb|EFX50499.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322613000|gb|EFY09951.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322617412|gb|EFY14312.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625596|gb|EFY22418.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627019|gb|EFY23812.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631265|gb|EFY28028.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638298|gb|EFY34997.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322642852|gb|EFY39438.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646992|gb|EFY43494.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650380|gb|EFY46793.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656330|gb|EFY52624.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322657555|gb|EFY53825.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665966|gb|EFY62147.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322666705|gb|EFY62882.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671052|gb|EFY67182.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322679241|gb|EFY75293.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681645|gb|EFY77672.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686028|gb|EFY82016.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323192654|gb|EFZ77882.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197839|gb|EFZ82970.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203728|gb|EFZ88749.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323210768|gb|EFZ95644.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215934|gb|EGA00667.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221427|gb|EGA05845.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323227327|gb|EGA11494.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231740|gb|EGA15851.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236155|gb|EGA20232.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239608|gb|EGA23656.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244296|gb|EGA28304.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249607|gb|EGA33519.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250301|gb|EGA34187.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256508|gb|EGA40239.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323259794|gb|EGA43427.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323265202|gb|EGA48700.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323268369|gb|EGA51841.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326625640|gb|EGE31985.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|332990757|gb|AEF09740.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|339514737|emb|CCC32507.1| transcription termination factor [Salmonella bongori NCTC 12419]
gi|353074106|gb|EHB39868.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353613283|gb|EHC65415.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|353623895|gb|EHC73064.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|357207720|gb|AET55766.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|363552590|gb|EHL36874.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363553050|gb|EHL37322.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363559443|gb|EHL43609.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363559859|gb|EHL44009.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363573435|gb|EHL57315.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363577513|gb|EHL61335.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366054437|gb|EHN18792.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366056375|gb|EHN20699.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366066452|gb|EHN30619.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366069068|gb|EHN33196.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366070476|gb|EHN34586.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366081234|gb|EHN45183.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366081698|gb|EHN45639.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366828727|gb|EHN55608.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205570|gb|EHP19078.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|374355425|gb|AEZ47186.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|379050335|gb|EHY68228.1| transcription termination factor Rho [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379987551|emb|CCF86433.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|380465354|gb|AFD60757.1| transcription termination factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|381295362|gb|EIC36477.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381295606|gb|EIC36716.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381300181|gb|EIC41245.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381307383|gb|EIC48240.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381316979|gb|EIC57716.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|383796333|gb|AFH43415.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392614160|gb|EIW96610.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392618214|gb|EIX00621.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392730211|gb|EIZ87457.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392737516|gb|EIZ94673.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392742697|gb|EIZ99783.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392743462|gb|EJA00534.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392751504|gb|EJA08453.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392753954|gb|EJA10874.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392755128|gb|EJA12042.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392757420|gb|EJA14308.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392768379|gb|EJA25135.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392777202|gb|EJA33887.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392779601|gb|EJA36265.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392780385|gb|EJA37038.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392785356|gb|EJA41935.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392791320|gb|EJA47808.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392802502|gb|EJA58714.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392805601|gb|EJA61724.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392806269|gb|EJA62380.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392807564|gb|EJA63634.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392808146|gb|EJA64199.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392817123|gb|EJA73040.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392822647|gb|EJA78453.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392830974|gb|EJA86616.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392837026|gb|EJA92599.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392840850|gb|EJA96383.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|395982684|gb|EJH91883.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395985620|gb|EJH94789.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395993730|gb|EJI02822.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395999734|gb|EJI08750.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396005708|gb|EJI14682.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396007624|gb|EJI16569.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396012776|gb|EJI21671.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396020737|gb|EJI29576.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396021147|gb|EJI29974.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396026617|gb|EJI35383.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396026702|gb|EJI35467.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396034137|gb|EJI42839.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396039427|gb|EJI48053.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396045981|gb|EJI54571.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396047548|gb|EJI56120.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396055433|gb|EJI63919.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396060581|gb|EJI69024.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396060666|gb|EJI69108.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396072942|gb|EJI81249.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396073377|gb|EJI81679.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396075267|gb|EJI83542.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|402526106|gb|EJW33385.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402529094|gb|EJW36342.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402529876|gb|EJW37104.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402530095|gb|EJW37318.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414012296|gb|EKS96218.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414013649|gb|EKS97525.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414013844|gb|EKS97716.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414027549|gb|EKT10774.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414028533|gb|EKT11718.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414028879|gb|EKT12044.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414041828|gb|EKT24383.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414042638|gb|EKT25171.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414047043|gb|EKT29345.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414055743|gb|EKT37624.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414062091|gb|EKT43446.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|434942755|gb|ELL48988.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434958374|gb|ELL51934.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434969422|gb|ELL62129.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434974676|gb|ELL67008.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434977342|gb|ELL69468.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434978128|gb|ELL70186.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434987141|gb|ELL78791.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434991415|gb|ELL82912.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434993720|gb|ELL85119.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435003925|gb|ELL94924.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435006686|gb|ELL97562.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435011011|gb|ELM01757.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435013542|gb|ELM04177.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435020309|gb|ELM10722.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435020361|gb|ELM10766.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|435030358|gb|ELM20389.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435031912|gb|ELM21858.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435034891|gb|ELM24747.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435044026|gb|ELM33725.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435046951|gb|ELM36560.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435055981|gb|ELM45386.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435056066|gb|ELM45470.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435061661|gb|ELM50882.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435064300|gb|ELM53434.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435067465|gb|ELM56506.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435072479|gb|ELM61398.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435085716|gb|ELM74264.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435086698|gb|ELM75228.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435087955|gb|ELM76425.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435087980|gb|ELM76443.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435089377|gb|ELM77813.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435103422|gb|ELM91512.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435108032|gb|ELM96009.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435110829|gb|ELM98736.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435112038|gb|ELM99921.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435123966|gb|ELN11449.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435125988|gb|ELN13400.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435130631|gb|ELN17860.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435131745|gb|ELN18952.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435142429|gb|ELN29330.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435147502|gb|ELN34265.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435151464|gb|ELN38105.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435154498|gb|ELN41078.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435158351|gb|ELN44753.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435160305|gb|ELN46585.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435167412|gb|ELN53336.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435177460|gb|ELN62783.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435177770|gb|ELN63041.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435178548|gb|ELN63756.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435185550|gb|ELN70409.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435193028|gb|ELN77529.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435196910|gb|ELN81229.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435198737|gb|ELN82893.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435201647|gb|ELN85536.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435212756|gb|ELN95714.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435215189|gb|ELN97904.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435217862|gb|ELO00270.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435226021|gb|ELO07616.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435232491|gb|ELO13586.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435233485|gb|ELO14490.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435247375|gb|ELO27342.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435250176|gb|ELO29918.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435256651|gb|ELO35946.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435263117|gb|ELO42184.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435264010|gb|ELO43032.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435272470|gb|ELO50871.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435278152|gb|ELO56024.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435281977|gb|ELO59616.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435283966|gb|ELO61478.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435290707|gb|ELO67610.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435293754|gb|ELO70418.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435299344|gb|ELO75494.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435308053|gb|ELO83062.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435310695|gb|ELO85076.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435317042|gb|ELO90105.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435323990|gb|ELO95968.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435333548|gb|ELP04350.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|436420814|gb|ELP18671.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436421954|gb|ELP19794.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|436422529|gb|ELP20365.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436424589|gb|ELP22358.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|444850194|gb|ELX75298.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444851240|gb|ELX76332.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444856898|gb|ELX81917.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444859605|gb|ELX84548.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444867092|gb|ELX91796.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444870527|gb|ELX95021.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444879477|gb|ELY03577.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444879703|gb|ELY03796.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444885772|gb|ELY09549.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444891092|gb|ELY14370.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|451911303|gb|AGF83109.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 419
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENARNKIL 132
>gi|410638414|ref|ZP_11348976.1| transcription termination factor Rho [Glaciecola lipolytica E3]
gi|410142072|dbj|GAC16181.1| transcription termination factor Rho [Glaciecola lipolytica E3]
Length = 421
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/349 (71%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI +VN +KPE S+N+ LF+NLTPLH + L+R S E++T RI+
Sbjct: 103 PPKDSERYFALLKINQVNFDKPENSRNKILFENLTPLHANRRFTLQRGNGSTEDLTARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG GQRGL+VA PK+GK+++LQ+IA +I NH ++ ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGAGQRGLIVAPPKAGKTLLLQNIAQSIAANHPDSELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VQGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R+++EKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKISEKRVFPAIDFNRSGTRREELLTTQDELQKMWILRKIVHEMS 391
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 169/302 (55%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A + + LE ++ R RKQ+++FAI K K GE IFGDG LE+L DGFG
Sbjct: 6 LKNKPISELVALAEKMGLE--NMARARKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIR--------------------- 470
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR
Sbjct: 64 FLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKINQVNFDK 123
Query: 471 -------------VPKNGERYFALLK----------------------IKKVNVASPKSG 495
P + R F L + + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHANRRFTLQRGNGSTEDLTARILDLASPIGAGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH ++ ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQNIAQSIAANHPDSELMVLLIDERPEEVTEMQRLVQGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|291615699|ref|YP_003518441.1| Rho [Pantoea ananatis LMG 20103]
gi|378581774|ref|ZP_09830418.1| transcription termination factor [Pantoea stewartii subsp.
stewartii DC283]
gi|378769234|ref|YP_005197709.1| transcription termination factor Rho [Pantoea ananatis LMG 5342]
gi|386017881|ref|YP_005936182.1| transcription termination factor Rho [Pantoea ananatis AJ13355]
gi|386081310|ref|YP_005994835.1| transcription termination factor Rho [Pantoea ananatis PA13]
gi|291150729|gb|ADD75313.1| Rho [Pantoea ananatis LMG 20103]
gi|327395964|dbj|BAK13386.1| transcription termination factor Rho [Pantoea ananatis AJ13355]
gi|354990491|gb|AER34615.1| transcription termination factor Rho [Pantoea ananatis PA13]
gi|365188722|emb|CCF11672.1| transcription termination factor Rho [Pantoea ananatis LMG 5342]
gi|377815688|gb|EHT98799.1| transcription termination factor [Pantoea stewartii subsp.
stewartii DC283]
Length = 419
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQEELQKMWILRKIIHPM 390
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNYDKPENSRNKIL 132
>gi|384426203|ref|YP_005635560.1| transcription termination factor Rho [Xanthomonas campestris pv.
raphani 756C]
gi|341935303|gb|AEL05442.1| transcription termination factor Rho [Xanthomonas campestris pv.
raphani 756C]
Length = 600
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 225 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 284
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 285 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 344
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 345 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 404
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 405 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 464
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 465 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 524
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 525 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 572
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 208 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 267
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 268 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 327
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 328 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 387
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 388 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 447
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 448 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 487
>gi|417321549|ref|ZP_12108086.1| transcription termination factor Rho [Vibrio parahaemolyticus
10329]
gi|328471328|gb|EGF42227.1| transcription termination factor Rho [Vibrio parahaemolyticus
10329]
Length = 419
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR FNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRHFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPM 390
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/285 (48%), Positives = 167/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIR FNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRHFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|325577617|ref|ZP_08147892.1| transcription termination factor Rho [Haemophilus parainfluenzae
ATCC 33392]
gi|419801872|ref|ZP_14327075.1| transcription termination factor Rho [Haemophilus parainfluenzae
HK262]
gi|419846069|ref|ZP_14369326.1| transcription termination factor Rho [Haemophilus parainfluenzae
HK2019]
gi|325160362|gb|EGC72488.1| transcription termination factor Rho [Haemophilus parainfluenzae
ATCC 33392]
gi|385192239|gb|EIF39645.1| transcription termination factor Rho [Haemophilus parainfluenzae
HK262]
gi|386414364|gb|EIJ28920.1| transcription termination factor Rho [Haemophilus parainfluenzae
HK2019]
Length = 420
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/345 (72%), Positives = 302/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPAARHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ E
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPE 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 CELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPAARHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|146280938|ref|YP_001171091.1| transcription termination factor Rho [Pseudomonas stutzeri A1501]
gi|339492657|ref|YP_004712950.1| transcription termination factor Rho [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|386019236|ref|YP_005937260.1| transcription termination factor Rho [Pseudomonas stutzeri DSM
4166]
gi|145569143|gb|ABP78249.1| transcription termination factor Rho [Pseudomonas stutzeri A1501]
gi|327479208|gb|AEA82518.1| transcription termination factor Rho [Pseudomonas stutzeri DSM
4166]
gi|338800029|gb|AEJ03861.1| transcription termination factor Rho [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 419
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINYDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGN+E+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL +D+LQ+IW+LRKLL+ +
Sbjct: 344 QLDRRIAEKRVFPAININRSGTRREELLTAEDELQRIWILRKLLHPM 390
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 86/122 (70%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L +AE ID ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS S
Sbjct: 15 LEMAEQMGID----NMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADS 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSINYDRPENAKNK 130
Query: 499 IL 500
IL
Sbjct: 131 IL 132
>gi|407072039|ref|ZP_11102877.1| transcription termination factor Rho [Vibrio cyclitrophicus ZF14]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 305/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++E + E+IT RI+
Sbjct: 103 PPKDGERYFALLKVNTVNYDKPDNARNKILFENLTPLHANERMVMEAGNGATEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKNDELQKMWILRKIVHPM 390
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 79/105 (75%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
RLRKQ+++F+I K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK+GERYFALLK+ VN P + ++ IL
Sbjct: 88 RFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPDNARNKIL 132
>gi|418960334|ref|ZP_13512225.1| transcription termination factor Rho [Escherichia coli J53]
gi|384376941|gb|EIE34841.1| transcription termination factor Rho [Escherichia coli J53]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|387769145|ref|ZP_10125411.1| transcription termination factor Rho [Pasteurella bettyae CCUG
2042]
gi|386907101|gb|EIJ71816.1| transcription termination factor Rho [Pasteurella bettyae CCUG
2042]
Length = 420
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/345 (72%), Positives = 302/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPASRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ E
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPE 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 CELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPASRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|90408659|ref|ZP_01216811.1| transcription termination factor Rho [Psychromonas sp. CNPT3]
gi|90310235|gb|EAS38368.1| transcription termination factor Rho [Psychromonas sp. CNPT3]
Length = 422
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 251/365 (68%), Positives = 312/365 (85%), Gaps = 3/365 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD VEG+IR
Sbjct: 44 KSGEDIFGAGVLEILQDGFGFLRSSDCSYLAGPDDIYISPSQIRRFNLRTGDSVEGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLKI KVN KPE S+N+ LF+NLTP+HP + LE S E+IT RI+D
Sbjct: 104 PKDGERYFALLKINKVNFNKPEYSRNKILFENLTPIHPTERFRLESGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIGKGQRGL+VA PK+GK+++LQ+IA +I+ N+ +A++IV+LIDERPEEVTEM+R V
Sbjct: 164 LVSPIGKGQRGLIVAPPKAGKTMLLQNIAQSISINYPDAVLIVLLIDERPEEVTEMRRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 RGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGG+D+NAL RPKRFFGAARN+EEGGSLTI+ATALI+TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGIDANALHRPKRFFGAARNVEEGGSLTILATALIDTGSKMDEVIYEEFKGTGNSEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL---TMTSFTVSLF 359
HL R+LAEKR+YPAI++ +SGTRREELL + ++LQ++W+LR++++ + T F +S
Sbjct: 344 HLNRKLAEKRIYPAIDIIRSGTRREELLTKAEELQRMWILRQIVHPMGEIGATEFMISKL 403
Query: 360 FIKRT 364
+ +T
Sbjct: 404 GLSKT 408
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I+ N+ +A++IV+LIDERPEEVTEM+R VRGEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSISINYPDAVLIVLLIDERPEEVTEMRRLVRGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGG+D+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGIDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 90/129 (69%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +T LE + RLRKQ+++FAI K K GE IFG G LE+L DGFG
Sbjct: 6 LKNTSVAQLVQLGETKGLE--HLARLRKQDIIFAILKAHAKSGEDIFGAGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS +Y+A DDIY+SPSQIRRFNL TG +G+IR PK+GERYFALLKI KVN
Sbjct: 64 FLRSSDCSYLAGPDDIYISPSQIRRFNLRTGDSVEGKIRPPKDGERYFALLKINKVNFNK 123
Query: 492 PKSGKSIIL 500
P+ ++ IL
Sbjct: 124 PEYSRNKIL 132
>gi|438074825|ref|ZP_20857288.1| transcription termination factor Rho, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|435310506|gb|ELO84953.1| transcription termination factor Rho, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
Length = 398
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 22 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 81
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 82 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 141
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 142 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 201
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 202 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 261
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 262 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 321
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 322 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 369
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 156 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 215
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 216 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 275
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 276 PKRFFGAAR 284
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 2 LENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 61
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 62 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 111
>gi|59710665|ref|YP_203441.1| transcription termination factor Rho [Vibrio fischeri ES114]
gi|59478766|gb|AAW84553.1| transcription termination factor [Vibrio fischeri ES114]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH L +ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNAVNHDRPDNARNKILFENLTPLHANDRLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKADELQKMWILRKIVHPM 390
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 143/302 (47%), Positives = 179/302 (59%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A +T+ LE ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNRSVSDLVALGETLGLE--NLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--- 488
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNAVNHDR 123
Query: 489 ----------------------------------------VASP-------------KSG 495
+ASP K+G
Sbjct: 124 PDNARNKILFENLTPLHANDRLRMERGNGSTEDITARVLDLASPIGRGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 184 KTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|406675112|ref|ZP_11082302.1| transcription termination factor Rho [Aeromonas veronii AMC35]
gi|423203031|ref|ZP_17189609.1| transcription termination factor Rho [Aeromonas veronii AER39]
gi|423211690|ref|ZP_17198223.1| transcription termination factor Rho [Aeromonas veronii AER397]
gi|404613189|gb|EKB10224.1| transcription termination factor Rho [Aeromonas veronii AER397]
gi|404613674|gb|EKB10693.1| transcription termination factor Rho [Aeromonas veronii AER39]
gi|404627882|gb|EKB24671.1| transcription termination factor Rho [Aeromonas veronii AMC35]
Length = 421
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE S+N+ LF+NLTPLH + L +ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDRPENSRNKILFENLTPLHANERLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRM 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRVYPAI++ +SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVYPAIDITRSGTRKEELLTSGDELQKMWILRKIVHPM 390
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R K++++FAI K K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDRPENSRNKIL 132
>gi|389759010|ref|ZP_10191676.1| transcription termination factor Rho, partial [Rhodanobacter sp.
115]
gi|388430744|gb|EIL87877.1| transcription termination factor Rho, partial [Rhodanobacter sp.
115]
Length = 520
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 301/345 (87%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD++ G +R PK
Sbjct: 148 GGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQIRRFNLRTGDYITGRVRHPK 207
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFA+L++ +NG+ PE SKN+ LF+NLTPL P+ LER S E+ITGRI+DL+
Sbjct: 208 EGERYFAMLRVDDINGDPPEASKNKMLFENLTPLFPRTAFKLERGNGSSEDITGRILDLV 267
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIG+GQRGL+V+ PKSGK+++LQ+IA AI+ NH +A +I++LIDERPEEVTE+ RSVR
Sbjct: 268 APIGRGQRGLIVSQPKSGKTMMLQNIAQAISYNHPDAHLIMLLIDERPEEVTEIARSVRA 327
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 328 EVISSTFDEPAVRHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVL 387
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATAL +TGS+MD+VIYEEFKGTGNMEVHL
Sbjct: 388 TGGVDANALQRPKRFFGAARNVEEGGSLTIVATALTDTGSKMDEVIYEEFKGTGNMEVHL 447
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
RR++EKRVYPAI++N+SGTRRE+LLI+ D L KIW+LRKLL+ +
Sbjct: 448 SRRISEKRVYPAIDINRSGTRREDLLIEPDMLAKIWILRKLLHPM 492
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PKSGK+++LQ+IA AI+ NH +A +I++LIDERPEEVTE+ RSVR EVI+STFDEPA
Sbjct: 279 VSQPKSGKTMMLQNIAQAISYNHPDAHLIMLLIDERPEEVTEIARSVRAEVISSTFDEPA 338
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 339 VRHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 398
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 399 PKRFFGAAR 407
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 74/107 (69%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++F I K + G I+ +G LE+L DGFGFLRS +Y+A DDIY+SPSQ
Sbjct: 128 VARQRKQDVVFNILKAHARSGGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVSPSQ 187
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G +R PK GERYFA+L++ +N P++ K+ +L
Sbjct: 188 IRRFNLRTGDYITGRVRHPKEGERYFAMLRVDDINGDPPEASKNKML 234
>gi|366158852|ref|ZP_09458714.1| transcription termination factor Rho [Escherichia sp. TW09308]
gi|432374274|ref|ZP_19617305.1| transcription termination factor Rho [Escherichia coli KTE11]
gi|430893696|gb|ELC16020.1| transcription termination factor Rho [Escherichia coli KTE11]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|218701304|ref|YP_002408933.1| transcription termination factor Rho [Escherichia coli IAI39]
gi|218371290|emb|CAR19124.1| transcription termination factor [Escherichia coli IAI39]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|157144415|ref|YP_001451734.1| transcription termination factor Rho [Citrobacter koseri ATCC
BAA-895]
gi|283787535|ref|YP_003367400.1| transcription termination factor [Citrobacter rodentium ICC168]
gi|283834553|ref|ZP_06354294.1| transcription termination factor Rho [Citrobacter youngae ATCC
29220]
gi|311281532|ref|YP_003943763.1| transcription termination factor Rho [Enterobacter cloacae SCF1]
gi|365103560|ref|ZP_09333426.1| transcription termination factor Rho [Citrobacter freundii
4_7_47CFAA]
gi|377579472|ref|ZP_09808440.1| transcription termination factor Rho [Escherichia hermannii NBRC
105704]
gi|395230293|ref|ZP_10408598.1| transcription termination factor Rho [Citrobacter sp. A1]
gi|420376501|ref|ZP_14876246.1| transcription termination factor Rho [Shigella flexneri 1235-66]
gi|421847333|ref|ZP_16280472.1| transcription termination factor Rho [Citrobacter freundii ATCC
8090 = MTCC 1658]
gi|424730801|ref|ZP_18159394.1| transcription termination factor rho [Citrobacter sp. L17]
gi|157081620|gb|ABV11298.1| hypothetical protein CKO_00124 [Citrobacter koseri ATCC BAA-895]
gi|282950989|emb|CBG90666.1| transcription termination factor [Citrobacter rodentium ICC168]
gi|291069683|gb|EFE07792.1| transcription termination factor Rho [Citrobacter youngae ATCC
29220]
gi|308750727|gb|ADO50479.1| transcription termination factor Rho [Enterobacter cloacae SCF1]
gi|363645232|gb|EHL84503.1| transcription termination factor Rho [Citrobacter freundii
4_7_47CFAA]
gi|377539265|dbj|GAB53605.1| transcription termination factor Rho [Escherichia hermannii NBRC
105704]
gi|391303426|gb|EIQ61263.1| transcription termination factor Rho [Shigella flexneri 1235-66]
gi|394716024|gb|EJF21801.1| transcription termination factor Rho [Citrobacter sp. A1]
gi|411771283|gb|EKS54984.1| transcription termination factor Rho [Citrobacter freundii ATCC
8090 = MTCC 1658]
gi|422894706|gb|EKU34514.1| transcription termination factor rho [Citrobacter sp. L17]
gi|455645176|gb|EMF24240.1| transcription termination factor Rho [Citrobacter freundii GTC
09479]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|418040319|ref|ZP_12678565.1| transcription termination factor Rho [Escherichia coli W26]
gi|383476813|gb|EID68746.1| transcription termination factor Rho [Escherichia coli W26]
Length = 384
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 8 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 67
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 68 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 127
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 128 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 187
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 188 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 247
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 248 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 307
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 308 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 355
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 142 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 201
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 202 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 261
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 262 PKRFFGAAR 270
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 72/97 (74%)
Query: 404 FAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGI 463
+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TG
Sbjct: 1 MSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGD 60
Query: 464 LWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 61 TISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 97
>gi|417852074|ref|ZP_12497718.1| transcription termination factor Rho [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338217872|gb|EGP03706.1| transcription termination factor Rho [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 420
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNYPECELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNT+ PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTITPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L+ +
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTSPDELQKMWILRKILHPM 391
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/283 (48%), Positives = 170/283 (60%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+S
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFNL TG +G+IR PK GERYFALLK+ +VN
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHAN 143
Query: 489 ---------------------VASP-------------KSGKSIILQHIAHAITTNHSEA 514
+ASP K+GK+++LQ+IA +IT N+ E
Sbjct: 144 SRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNYPEC 203
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 204 ELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVI 263
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT+ PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 264 LLDSITRLARAYNTITPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|345428788|ref|YP_004821904.1| transcription termination factor [Haemophilus parainfluenzae T3T1]
gi|301154847|emb|CBW14310.1| transcription termination factor [Haemophilus parainfluenzae T3T1]
Length = 420
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/345 (72%), Positives = 302/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ E
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPE 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 CELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|417557427|ref|ZP_12208465.1| Transcription termination factor [Xylella fastidiosa EB92.1]
gi|338180002|gb|EGO82910.1| Transcription termination factor [Xylella fastidiosa EB92.1]
Length = 496
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 121 TRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 180
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P+K LER S E+ITGRI+
Sbjct: 181 FPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRIL 240
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+
Sbjct: 241 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRT 300
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRL+E KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 301 VRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSG 360
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 361 KVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCE 420
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AEKRVYPAI++N+SGTRRE+LLI+ D LQKIW+LRKLL+ +
Sbjct: 421 LHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPM 468
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 255 VSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 314
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD++AL R
Sbjct: 315 ARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHR 374
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 375 PKRFFGAAR 383
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 104 VARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 163
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G IR PK+GERYFAL + +N ++ K+ IL
Sbjct: 164 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKIL 210
>gi|388255744|ref|ZP_10132925.1| transcription termination factor Rho [Cellvibrio sp. BR]
gi|387939444|gb|EIK45994.1| transcription termination factor Rho [Cellvibrio sp. BR]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/354 (71%), Positives = 308/354 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIYGDGVLEILVDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +N +KPE S+N+ LF+NLTPL P L LE S E++TGRII
Sbjct: 103 PPKEGERYFALLKVNDINFDKPENSRNKILFENLTPLFPNIRLPLEAGNGSTEDLTGRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DLIAPIGKGQRGL+VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLIAPIGKGQRGLIVAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATAL++TGS+MD+VIYEEFKGTGN+E
Sbjct: 283 KVLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALVDTGSKMDEVIYEEFKGTGNLE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFT 355
+HL+R++AEKR+YPAIN+ +SGTRRE+LL+++D+LQ+ W+LR+LL + + T
Sbjct: 343 LHLDRKIAEKRIYPAINVRRSGTRREDLLMKEDELQRAWILRRLLNDMEDVAAT 396
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA AIT N+ E +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL+R
Sbjct: 237 ARHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 83/113 (73%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R RKQ+++F I K+ K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGLENIARSRKQDIIFNILKRHAKGGEDIYGDGVLEILVDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNDINFDKPENSRNKIL 132
>gi|409418000|ref|ZP_11258014.1| transcription termination factor Rho [Pseudomonas sp. HYS]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|156935887|ref|YP_001439803.1| transcription termination factor Rho [Cronobacter sakazakii ATCC
BAA-894]
gi|260596011|ref|YP_003208582.1| transcription termination factor Rho [Cronobacter turicensis z3032]
gi|389842700|ref|YP_006344784.1| transcription termination factor Rho [Cronobacter sakazakii ES15]
gi|397162672|ref|ZP_10486142.1| transcription termination factor Rho [Enterobacter radicincitans
DSM 16656]
gi|417790603|ref|ZP_12438141.1| transcription termination factor Rho [Cronobacter sakazakii E899]
gi|424801945|ref|ZP_18227487.1| Transcription termination factor Rho [Cronobacter sakazakii 696]
gi|429084715|ref|ZP_19147712.1| Transcription termination factor Rho [Cronobacter condimenti 1330]
gi|429089058|ref|ZP_19151790.1| Transcription termination factor Rho [Cronobacter universalis NCTC
9529]
gi|429091824|ref|ZP_19154477.1| Transcription termination factor Rho [Cronobacter dublinensis 1210]
gi|429098999|ref|ZP_19161105.1| Transcription termination factor Rho [Cronobacter dublinensis 582]
gi|429102760|ref|ZP_19164734.1| Transcription termination factor Rho [Cronobacter turicensis 564]
gi|429107045|ref|ZP_19168914.1| Transcription termination factor Rho [Cronobacter malonaticus 681]
gi|429117757|ref|ZP_19178675.1| Transcription termination factor Rho [Cronobacter sakazakii 701]
gi|429119794|ref|ZP_19180498.1| Transcription termination factor Rho [Cronobacter sakazakii 680]
gi|449309995|ref|YP_007442351.1| transcription termination factor Rho [Cronobacter sakazakii SP291]
gi|156534141|gb|ABU78967.1| hypothetical protein ESA_03775 [Cronobacter sakazakii ATCC BAA-894]
gi|260215188|emb|CBA27021.1| Transcription termination factor rho [Cronobacter turicensis z3032]
gi|333955317|gb|EGL73081.1| transcription termination factor Rho [Cronobacter sakazakii E899]
gi|387853176|gb|AFK01274.1| transcription termination factor Rho [Cronobacter sakazakii ES15]
gi|396095716|gb|EJI93256.1| transcription termination factor Rho [Enterobacter radicincitans
DSM 16656]
gi|423237666|emb|CCK09357.1| Transcription termination factor Rho [Cronobacter sakazakii 696]
gi|426285339|emb|CCJ87218.1| Transcription termination factor Rho [Cronobacter dublinensis 582]
gi|426289409|emb|CCJ90847.1| Transcription termination factor Rho [Cronobacter turicensis 564]
gi|426293768|emb|CCJ95027.1| Transcription termination factor Rho [Cronobacter malonaticus 681]
gi|426320886|emb|CCK04788.1| Transcription termination factor Rho [Cronobacter sakazakii 701]
gi|426325709|emb|CCK11235.1| Transcription termination factor Rho [Cronobacter sakazakii 680]
gi|426508861|emb|CCK16902.1| Transcription termination factor Rho [Cronobacter universalis NCTC
9529]
gi|426546240|emb|CCJ73753.1| Transcription termination factor Rho [Cronobacter condimenti 1330]
gi|426743485|emb|CCJ80590.1| Transcription termination factor Rho [Cronobacter dublinensis 1210]
gi|449100028|gb|AGE88062.1| transcription termination factor Rho [Cronobacter sakazakii SP291]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|15833970|ref|NP_312743.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
Sakai]
gi|16131639|ref|NP_418230.1| transcription termination factor [Escherichia coli str. K-12
substr. MG1655]
gi|30064922|ref|NP_839093.1| transcription termination factor Rho [Shigella flexneri 2a str.
2457T]
gi|56480435|ref|NP_709586.2| transcription termination factor Rho [Shigella flexneri 2a str.
301]
gi|74314297|ref|YP_312716.1| transcription termination factor Rho [Shigella sonnei Ss046]
gi|82546137|ref|YP_410084.1| transcription termination factor Rho [Shigella boydii Sb227]
gi|82779036|ref|YP_405385.1| transcription termination factor Rho [Shigella dysenteriae Sd197]
gi|157155913|ref|YP_001465263.1| transcription termination factor Rho [Escherichia coli E24377A]
gi|157163256|ref|YP_001460574.1| transcription termination factor Rho [Escherichia coli HS]
gi|168751740|ref|ZP_02776762.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4113]
gi|168753676|ref|ZP_02778683.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4401]
gi|168764140|ref|ZP_02789147.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4501]
gi|168768060|ref|ZP_02793067.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4486]
gi|168775670|ref|ZP_02800677.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4196]
gi|168780678|ref|ZP_02805685.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4076]
gi|168786617|ref|ZP_02811624.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC869]
gi|168800999|ref|ZP_02826006.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC508]
gi|170022190|ref|YP_001727144.1| transcription termination factor Rho [Escherichia coli ATCC 8739]
gi|170083270|ref|YP_001732590.1| transcription termination factor Rho [Escherichia coli str. K-12
substr. DH10B]
gi|170683673|ref|YP_001746101.1| transcription termination factor Rho [Escherichia coli SMS-3-5]
gi|170769817|ref|ZP_02904270.1| transcription termination factor Rho [Escherichia albertii TW07627]
gi|187732455|ref|YP_001882393.1| transcription termination factor Rho [Shigella boydii CDC 3083-94]
gi|188494722|ref|ZP_03001992.1| transcription termination factor Rho [Escherichia coli 53638]
gi|191166125|ref|ZP_03027960.1| transcription termination factor Rho [Escherichia coli B7A]
gi|191174364|ref|ZP_03035869.1| transcription termination factor Rho [Escherichia coli F11]
gi|191174433|ref|ZP_03035935.1| transcription termination factor Rho [Escherichia coli F11]
gi|193066127|ref|ZP_03047182.1| transcription termination factor Rho [Escherichia coli E22]
gi|193071038|ref|ZP_03051965.1| transcription termination factor Rho [Escherichia coli E110019]
gi|194429771|ref|ZP_03062286.1| transcription termination factor Rho [Escherichia coli B171]
gi|194434630|ref|ZP_03066886.1| transcription termination factor Rho [Shigella dysenteriae 1012]
gi|194438677|ref|ZP_03070765.1| transcription termination factor Rho [Escherichia coli 101-1]
gi|195938071|ref|ZP_03083453.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4024]
gi|208809424|ref|ZP_03251761.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4206]
gi|208812033|ref|ZP_03253362.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4045]
gi|208819558|ref|ZP_03259878.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4042]
gi|209400658|ref|YP_002273300.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4115]
gi|209921256|ref|YP_002295340.1| transcription termination factor Rho [Escherichia coli SE11]
gi|215489111|ref|YP_002331542.1| transcription termination factor Rho [Escherichia coli O127:H6 str.
E2348/69]
gi|217324419|ref|ZP_03440503.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
TW14588]
gi|218550993|ref|YP_002384784.1| transcription termination factor Rho [Escherichia fergusonii ATCC
35469]
gi|218556345|ref|YP_002389259.1| transcription termination factor Rho [Escherichia coli IAI1]
gi|218560849|ref|YP_002393762.1| transcription termination factor Rho [Escherichia coli S88]
gi|218692062|ref|YP_002400274.1| transcription termination factor Rho [Escherichia coli ED1a]
gi|218697500|ref|YP_002405167.1| transcription termination factor Rho [Escherichia coli 55989]
gi|218707419|ref|YP_002414938.1| transcription termination factor Rho [Escherichia coli UMN026]
gi|222158479|ref|YP_002558618.1| Transcription termination factor rho [Escherichia coli LF82]
gi|227888634|ref|ZP_04006439.1| transcription termination factor Rho [Escherichia coli 83972]
gi|238902863|ref|YP_002928659.1| transcription termination factor Rho [Escherichia coli BW2952]
gi|254795780|ref|YP_003080617.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
TW14359]
gi|260846441|ref|YP_003224219.1| transcription termination factor Rho [Escherichia coli O103:H2 str.
12009]
gi|260857811|ref|YP_003231702.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
11368]
gi|260870508|ref|YP_003236910.1| transcription termination factor Rho [Escherichia coli O111:H- str.
11128]
gi|261225557|ref|ZP_05939838.1| transcription termination factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255603|ref|ZP_05948136.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
FRIK966]
gi|291285198|ref|YP_003502016.1| transcription termination factor rho [Escherichia coli O55:H7 str.
CB9615]
gi|293407412|ref|ZP_06651332.1| transcription termination factor Rho [Escherichia coli FVEC1412]
gi|293413226|ref|ZP_06655888.1| transcription termination factor Rho [Escherichia coli B354]
gi|293417248|ref|ZP_06659873.1| transcription termination factor Rho [Escherichia coli B185]
gi|293468100|ref|ZP_06664512.1| transcription termination factor Rho [Escherichia coli B088]
gi|298383152|ref|ZP_06992746.1| transcription termination factor rho [Escherichia coli FVEC1302]
gi|300818748|ref|ZP_07098955.1| transcription termination factor Rho [Escherichia coli MS 107-1]
gi|300823314|ref|ZP_07103445.1| transcription termination factor Rho [Escherichia coli MS 119-7]
gi|300900673|ref|ZP_07118826.1| transcription termination factor Rho [Escherichia coli MS 198-1]
gi|300904034|ref|ZP_07121916.1| transcription termination factor Rho [Escherichia coli MS 84-1]
gi|300921512|ref|ZP_07137856.1| transcription termination factor Rho [Escherichia coli MS 115-1]
gi|300923282|ref|ZP_07139331.1| transcription termination factor Rho [Escherichia coli MS 182-1]
gi|300930054|ref|ZP_07145484.1| transcription termination factor Rho [Escherichia coli MS 187-1]
gi|300940003|ref|ZP_07154628.1| transcription termination factor Rho [Escherichia coli MS 21-1]
gi|300947360|ref|ZP_07161556.1| transcription termination factor Rho [Escherichia coli MS 116-1]
gi|300955215|ref|ZP_07167610.1| transcription termination factor Rho [Escherichia coli MS 175-1]
gi|300979311|ref|ZP_07174495.1| transcription termination factor Rho [Escherichia coli MS 200-1]
gi|300985805|ref|ZP_07177597.1| transcription termination factor Rho [Escherichia coli MS 45-1]
gi|301021427|ref|ZP_07185451.1| transcription termination factor Rho [Escherichia coli MS 69-1]
gi|301028995|ref|ZP_07192152.1| transcription termination factor Rho [Escherichia coli MS 196-1]
gi|301047338|ref|ZP_07194423.1| transcription termination factor Rho [Escherichia coli MS 185-1]
gi|301303677|ref|ZP_07209798.1| transcription termination factor Rho [Escherichia coli MS 124-1]
gi|301325472|ref|ZP_07218955.1| transcription termination factor Rho [Escherichia coli MS 78-1]
gi|301646152|ref|ZP_07246051.1| transcription termination factor Rho [Escherichia coli MS 146-1]
gi|306815179|ref|ZP_07449332.1| transcription termination factor Rho [Escherichia coli NC101]
gi|307313641|ref|ZP_07593261.1| transcription termination factor Rho [Escherichia coli W]
gi|309784494|ref|ZP_07679132.1| transcription termination factor Rho [Shigella dysenteriae 1617]
gi|309796278|ref|ZP_07690688.1| transcription termination factor Rho [Escherichia coli MS 145-7]
gi|312969489|ref|ZP_07783691.1| transcription termination factor Rho [Escherichia coli 2362-75]
gi|312971935|ref|ZP_07786109.1| transcription termination factor Rho [Escherichia coli 1827-70]
gi|331660127|ref|ZP_08361063.1| transcription termination factor Rho [Escherichia coli TA206]
gi|331665428|ref|ZP_08366327.1| transcription termination factor Rho [Escherichia coli TA143]
gi|331670627|ref|ZP_08371464.1| transcription termination factor Rho [Escherichia coli TA271]
gi|331685501|ref|ZP_08386085.1| transcription termination factor Rho [Escherichia coli H299]
gi|378715297|ref|YP_005280190.1| transcription termination factor Rho [Escherichia coli KO11FL]
gi|383181030|ref|YP_005459035.1| transcription termination factor Rho [Shigella sonnei 53G]
gi|386282552|ref|ZP_10060200.1| transcription termination factor Rho [Escherichia sp. 4_1_40B]
gi|386597683|ref|YP_006094083.1| transcription termination factor Rho [Escherichia coli DH1]
gi|386601809|ref|YP_006103315.1| transcription termination factor Rho [Escherichia coli IHE3034]
gi|386606362|ref|YP_006112662.1| transcription termination factor Rho [Escherichia coli UM146]
gi|386611161|ref|YP_006126647.1| transcription termination factor [Escherichia coli W]
gi|386616593|ref|YP_006136259.1| transcription termination factor Rho [Escherichia coli UMNK88]
gi|386621456|ref|YP_006141036.1| Transcription termination factor [Escherichia coli NA114]
gi|386626676|ref|YP_006146404.1| transcription termination factor [Escherichia coli O7:K1 str. CE10]
gi|386699287|ref|YP_006163124.1| transcription termination factor Rho [Escherichia coli KO11FL]
gi|386707049|ref|YP_006170896.1| Transcription termination factor rho [Escherichia coli P12b]
gi|386711693|ref|YP_006175414.1| transcription termination factor Rho [Escherichia coli W]
gi|387509232|ref|YP_006161488.1| transcription termination factor Rho [Escherichia coli O55:H7 str.
RM12579]
gi|387609587|ref|YP_006098443.1| transcription termination factor [Escherichia coli 042]
gi|387614486|ref|YP_006117602.1| transcription termination factor [Escherichia coli ETEC H10407]
gi|387623437|ref|YP_006131065.1| transcription termination factor rho [Escherichia coli DH1]
gi|387885012|ref|YP_006315314.1| transcription termination factor Rho [Escherichia coli Xuzhou21]
gi|388479464|ref|YP_491656.1| transcription termination factor [Escherichia coli str. K-12
substr. W3110]
gi|404377178|ref|ZP_10982317.1| transcription termination factor Rho [Escherichia sp. 1_1_43]
gi|407466788|ref|YP_006786770.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484487|ref|YP_006781637.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
2011C-3493]
gi|410485033|ref|YP_006772579.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414578664|ref|ZP_11435826.1| transcription termination factor Rho [Shigella sonnei 3233-85]
gi|415773859|ref|ZP_11486406.1| transcription termination factor Rho [Escherichia coli 3431]
gi|415785976|ref|ZP_11493290.1| transcription termination factor Rho [Escherichia coli EPECa14]
gi|415799742|ref|ZP_11498999.1| transcription termination factor Rho [Escherichia coli E128010]
gi|415811024|ref|ZP_11503374.1| transcription termination factor Rho [Escherichia coli LT-68]
gi|415821831|ref|ZP_11510612.1| transcription termination factor Rho [Escherichia coli OK1180]
gi|415831433|ref|ZP_11517150.1| transcription termination factor Rho [Escherichia coli OK1357]
gi|415838448|ref|ZP_11520419.1| transcription termination factor Rho [Escherichia coli RN587/1]
gi|415846269|ref|ZP_11525389.1| transcription termination factor Rho [Shigella sonnei 53G]
gi|415858181|ref|ZP_11532763.1| transcription termination factor Rho [Shigella flexneri 2a str.
2457T]
gi|415865326|ref|ZP_11538188.1| transcription termination factor Rho [Escherichia coli MS 85-1]
gi|415875397|ref|ZP_11542152.1| transcription termination factor Rho [Escherichia coli MS 79-10]
gi|416265069|ref|ZP_11641256.1| Transcription termination factor Rho [Shigella dysenteriae CDC
74-1112]
gi|416288168|ref|ZP_11649104.1| Transcription termination factor Rho [Shigella boydii ATCC 9905]
gi|416298238|ref|ZP_11651897.1| Transcription termination factor Rho [Shigella flexneri CDC 796-83]
gi|416307634|ref|ZP_11654675.1| Transcription termination factor Rho [Escherichia coli O157:H7 str.
1044]
gi|416319768|ref|ZP_11662320.1| Transcription termination factor Rho [Escherichia coli O157:H7 str.
EC1212]
gi|416326895|ref|ZP_11666970.1| Transcription termination factor Rho [Escherichia coli O157:H7 str.
1125]
gi|416333481|ref|ZP_11670708.1| Transcription termination factor Rho [Escherichia coli WV_060327]
gi|416345868|ref|ZP_11679283.1| Transcription termination factor Rho [Escherichia coli EC4100B]
gi|416778731|ref|ZP_11876062.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
G5101]
gi|416790089|ref|ZP_11880955.1| transcription termination factor Rho [Escherichia coli O157:H- str.
493-89]
gi|416801863|ref|ZP_11885843.1| transcription termination factor Rho [Escherichia coli O157:H- str.
H 2687]
gi|416812722|ref|ZP_11890764.1| transcription termination factor Rho [Escherichia coli O55:H7 str.
3256-97]
gi|416823175|ref|ZP_11895381.1| transcription termination factor Rho [Escherichia coli O55:H7 str.
USDA 5905]
gi|416833496|ref|ZP_11900376.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
LSU-61]
gi|416900351|ref|ZP_11929626.1| transcription termination factor Rho [Escherichia coli STEC_7v]
gi|417087703|ref|ZP_11954601.1| transcription termination factor Rho [Escherichia coli cloneA_i1]
gi|417117389|ref|ZP_11968250.1| transcription termination factor Rho [Escherichia coli 1.2741]
gi|417125713|ref|ZP_11973674.1| transcription termination factor Rho [Escherichia coli 97.0246]
gi|417134417|ref|ZP_11979202.1| transcription termination factor Rho [Escherichia coli 5.0588]
gi|417142093|ref|ZP_11984668.1| transcription termination factor Rho [Escherichia coli 97.0259]
gi|417148979|ref|ZP_11989070.1| transcription termination factor Rho [Escherichia coli 1.2264]
gi|417157119|ref|ZP_11994743.1| transcription termination factor Rho [Escherichia coli 96.0497]
gi|417169208|ref|ZP_12001463.1| transcription termination factor Rho [Escherichia coli 99.0741]
gi|417176980|ref|ZP_12006776.1| transcription termination factor Rho [Escherichia coli 3.2608]
gi|417185468|ref|ZP_12010869.1| transcription termination factor Rho [Escherichia coli 93.0624]
gi|417202153|ref|ZP_12018403.1| transcription termination factor Rho [Escherichia coli 4.0522]
gi|417217819|ref|ZP_12023693.1| transcription termination factor Rho [Escherichia coli JB1-95]
gi|417222898|ref|ZP_12026338.1| transcription termination factor Rho [Escherichia coli 96.154]
gi|417228641|ref|ZP_12030399.1| transcription termination factor Rho [Escherichia coli 5.0959]
gi|417241790|ref|ZP_12037547.1| transcription termination factor Rho [Escherichia coli 9.0111]
gi|417249403|ref|ZP_12041187.1| transcription termination factor Rho [Escherichia coli 4.0967]
gi|417265182|ref|ZP_12052561.1| transcription termination factor Rho [Escherichia coli 2.3916]
gi|417269546|ref|ZP_12056906.1| transcription termination factor Rho [Escherichia coli 3.3884]
gi|417273351|ref|ZP_12060698.1| transcription termination factor Rho [Escherichia coli 2.4168]
gi|417279214|ref|ZP_12066524.1| transcription termination factor Rho [Escherichia coli 3.2303]
gi|417280557|ref|ZP_12067857.1| transcription termination factor Rho [Escherichia coli 3003]
gi|417285110|ref|ZP_12072401.1| transcription termination factor Rho [Escherichia coli TW07793]
gi|417293918|ref|ZP_12081197.1| transcription termination factor Rho [Escherichia coli B41]
gi|417296950|ref|ZP_12084197.1| transcription termination factor Rho [Escherichia coli 900105
(10e)]
gi|417310361|ref|ZP_12097175.1| Transcription termination factor Rho [Escherichia coli PCN033]
gi|417583405|ref|ZP_12234203.1| transcription termination factor Rho [Escherichia coli STEC_B2F1]
gi|417588922|ref|ZP_12239683.1| transcription termination factor Rho [Escherichia coli
STEC_C165-02]
gi|417594250|ref|ZP_12244936.1| transcription termination factor Rho [Escherichia coli 2534-86]
gi|417599218|ref|ZP_12249842.1| transcription termination factor Rho [Escherichia coli 3030-1]
gi|417604688|ref|ZP_12255250.1| transcription termination factor Rho [Escherichia coli STEC_94C]
gi|417610536|ref|ZP_12261026.1| transcription termination factor Rho [Escherichia coli
STEC_DG131-3]
gi|417615444|ref|ZP_12265892.1| transcription termination factor Rho [Escherichia coli STEC_EH250]
gi|417620454|ref|ZP_12270855.1| transcription termination factor Rho [Escherichia coli G58-1]
gi|417625960|ref|ZP_12276248.1| transcription termination factor Rho [Escherichia coli STEC_H.1.8]
gi|417631256|ref|ZP_12281488.1| transcription termination factor Rho [Escherichia coli STEC_MHI813]
gi|417636735|ref|ZP_12286940.1| transcription termination factor Rho [Escherichia coli STEC_S1191]
gi|417641802|ref|ZP_12291926.1| transcription termination factor Rho [Escherichia coli TX1999]
gi|417664410|ref|ZP_12313989.1| transcription termination factor Rho [Escherichia coli AA86]
gi|417669370|ref|ZP_12318906.1| transcription termination factor Rho [Escherichia coli STEC_O31]
gi|417674982|ref|ZP_12324411.1| transcription termination factor Rho [Shigella dysenteriae 155-74]
gi|417684603|ref|ZP_12333941.1| transcription termination factor Rho [Shigella boydii 3594-74]
gi|417692163|ref|ZP_12341367.1| transcription termination factor Rho [Shigella boydii 5216-82]
gi|417704405|ref|ZP_12353501.1| transcription termination factor Rho [Shigella flexneri K-218]
gi|417709701|ref|ZP_12358717.1| transcription termination factor Rho [Shigella flexneri VA-6]
gi|417714668|ref|ZP_12363620.1| transcription termination factor Rho [Shigella flexneri K-272]
gi|417719587|ref|ZP_12368468.1| transcription termination factor Rho [Shigella flexneri K-227]
gi|417725365|ref|ZP_12374151.1| transcription termination factor Rho [Shigella flexneri K-304]
gi|417730640|ref|ZP_12379324.1| transcription termination factor Rho [Shigella flexneri K-671]
gi|417735733|ref|ZP_12384370.1| transcription termination factor Rho [Shigella flexneri 2747-71]
gi|417740518|ref|ZP_12389085.1| transcription termination factor Rho [Shigella flexneri 4343-70]
gi|417745566|ref|ZP_12394084.1| transcription termination factor Rho [Shigella flexneri 2930-71]
gi|417758210|ref|ZP_12406270.1| transcription termination factor Rho [Escherichia coli DEC2B]
gi|417807468|ref|ZP_12454396.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
LB226692]
gi|417830036|ref|ZP_12476575.1| transcription termination factor Rho [Shigella flexneri J1713]
gi|417835207|ref|ZP_12481646.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
01-09591]
gi|417868165|ref|ZP_12513196.1| rho [Escherichia coli O104:H4 str. C227-11]
gi|417945708|ref|ZP_12588938.1| transcription termination factor Rho [Escherichia coli XH140A]
gi|417977651|ref|ZP_12618432.1| transcription termination factor Rho [Escherichia coli XH001]
gi|418259409|ref|ZP_12882303.1| transcription termination factor Rho [Shigella flexneri 6603-63]
gi|418269835|ref|ZP_12888025.1| transcription termination factor Rho [Shigella sonnei str. Moseley]
gi|418305415|ref|ZP_12917209.1| transcription termination factor Rho [Escherichia coli UMNF18]
gi|418941744|ref|ZP_13495059.1| transcription termination factor Rho [Escherichia coli O157:H43
str. T22]
gi|418999276|ref|ZP_13546852.1| transcription termination factor Rho [Escherichia coli DEC1A]
gi|419004589|ref|ZP_13552096.1| transcription termination factor Rho [Escherichia coli DEC1B]
gi|419010270|ref|ZP_13557677.1| transcription termination factor Rho [Escherichia coli DEC1C]
gi|419015971|ref|ZP_13563304.1| transcription termination factor Rho [Escherichia coli DEC1D]
gi|419020897|ref|ZP_13568193.1| transcription termination factor Rho [Escherichia coli DEC1E]
gi|419026350|ref|ZP_13573562.1| transcription termination factor Rho [Escherichia coli DEC2A]
gi|419031499|ref|ZP_13578638.1| transcription termination factor Rho [Escherichia coli DEC2C]
gi|419037178|ref|ZP_13584248.1| transcription termination factor Rho [Escherichia coli DEC2D]
gi|419042198|ref|ZP_13589212.1| transcription termination factor Rho [Escherichia coli DEC2E]
gi|419043231|ref|ZP_13590208.1| transcription termination factor Rho [Escherichia coli DEC3A]
gi|419053659|ref|ZP_13600524.1| transcription termination factor Rho [Escherichia coli DEC3B]
gi|419059695|ref|ZP_13606493.1| transcription termination factor Rho [Escherichia coli DEC3C]
gi|419065741|ref|ZP_13612440.1| transcription termination factor Rho [Escherichia coli DEC3D]
gi|419072124|ref|ZP_13617722.1| transcription termination factor Rho [Escherichia coli DEC3E]
gi|419078020|ref|ZP_13623516.1| transcription termination factor Rho [Escherichia coli DEC3F]
gi|419083104|ref|ZP_13628545.1| transcription termination factor Rho [Escherichia coli DEC4A]
gi|419089089|ref|ZP_13634437.1| transcription termination factor Rho [Escherichia coli DEC4B]
gi|419094921|ref|ZP_13640195.1| transcription termination factor Rho [Escherichia coli DEC4C]
gi|419100748|ref|ZP_13645933.1| transcription termination factor Rho [Escherichia coli DEC4D]
gi|419101608|ref|ZP_13646783.1| transcription termination factor Rho [Escherichia coli DEC4E]
gi|419112667|ref|ZP_13657708.1| transcription termination factor Rho [Escherichia coli DEC4F]
gi|419117346|ref|ZP_13662353.1| transcription termination factor Rho [Escherichia coli DEC5A]
gi|419123295|ref|ZP_13668231.1| transcription termination factor Rho [Escherichia coli DEC5B]
gi|419128601|ref|ZP_13673469.1| transcription termination factor Rho [Escherichia coli DEC5C]
gi|419134002|ref|ZP_13678825.1| transcription termination factor Rho [Escherichia coli DEC5D]
gi|419139145|ref|ZP_13683934.1| transcription termination factor Rho [Escherichia coli DEC5E]
gi|419144890|ref|ZP_13689616.1| transcription termination factor Rho [Escherichia coli DEC6A]
gi|419150790|ref|ZP_13695435.1| transcription termination factor Rho [Escherichia coli DEC6B]
gi|419156297|ref|ZP_13700851.1| transcription termination factor Rho [Escherichia coli DEC6C]
gi|419161654|ref|ZP_13706143.1| transcription termination factor Rho [Escherichia coli DEC6D]
gi|419166747|ref|ZP_13711194.1| transcription termination factor Rho [Escherichia coli DEC6E]
gi|419172742|ref|ZP_13716613.1| transcription termination factor Rho [Escherichia coli DEC7A]
gi|419177496|ref|ZP_13721302.1| transcription termination factor Rho [Escherichia coli DEC7B]
gi|419183304|ref|ZP_13726909.1| transcription termination factor Rho [Escherichia coli DEC7C]
gi|419188917|ref|ZP_13732419.1| transcription termination factor Rho [Escherichia coli DEC7D]
gi|419193854|ref|ZP_13737292.1| transcription termination factor Rho [Escherichia coli DEC7E]
gi|419199565|ref|ZP_13742852.1| transcription termination factor Rho [Escherichia coli DEC8A]
gi|419205946|ref|ZP_13749099.1| transcription termination factor Rho [Escherichia coli DEC8B]
gi|419212302|ref|ZP_13755364.1| transcription termination factor Rho [Escherichia coli DEC8C]
gi|419218146|ref|ZP_13761135.1| transcription termination factor Rho [Escherichia coli DEC8D]
gi|419219075|ref|ZP_13762040.1| transcription termination factor Rho [Escherichia coli DEC8E]
gi|419224869|ref|ZP_13767763.1| transcription termination factor Rho [Escherichia coli DEC9A]
gi|419235103|ref|ZP_13777866.1| transcription termination factor Rho [Escherichia coli DEC9B]
gi|419240466|ref|ZP_13783167.1| transcription termination factor Rho [Escherichia coli DEC9C]
gi|419245879|ref|ZP_13788508.1| transcription termination factor Rho [Escherichia coli DEC9D]
gi|419251883|ref|ZP_13794446.1| transcription termination factor Rho [Escherichia coli DEC9E]
gi|419257423|ref|ZP_13799920.1| transcription termination factor Rho [Escherichia coli DEC10A]
gi|419263551|ref|ZP_13805955.1| transcription termination factor Rho [Escherichia coli DEC10B]
gi|419264735|ref|ZP_13807124.1| transcription termination factor Rho [Escherichia coli DEC10C]
gi|419270407|ref|ZP_13812741.1| transcription termination factor Rho [Escherichia coli DEC10D]
gi|419280469|ref|ZP_13822708.1| transcription termination factor Rho [Escherichia coli DEC10E]
gi|419291998|ref|ZP_13834080.1| transcription termination factor Rho [Escherichia coli DEC11A]
gi|419297278|ref|ZP_13839312.1| transcription termination factor Rho [Escherichia coli DEC11B]
gi|419302870|ref|ZP_13844860.1| transcription termination factor Rho [Escherichia coli DEC11C]
gi|419308814|ref|ZP_13850702.1| transcription termination factor Rho [Escherichia coli DEC11D]
gi|419319278|ref|ZP_13861072.1| transcription termination factor Rho [Escherichia coli DEC12A]
gi|419325383|ref|ZP_13867067.1| transcription termination factor Rho [Escherichia coli DEC12B]
gi|419331496|ref|ZP_13873087.1| transcription termination factor Rho [Escherichia coli DEC12C]
gi|419336827|ref|ZP_13878339.1| transcription termination factor Rho [Escherichia coli DEC12D]
gi|419342368|ref|ZP_13883820.1| transcription termination factor Rho [Escherichia coli DEC12E]
gi|419347563|ref|ZP_13888929.1| transcription termination factor Rho [Escherichia coli DEC13A]
gi|419352024|ref|ZP_13893350.1| transcription termination factor Rho [Escherichia coli DEC13B]
gi|419357497|ref|ZP_13898742.1| transcription termination factor Rho [Escherichia coli DEC13C]
gi|419362470|ref|ZP_13903675.1| transcription termination factor Rho [Escherichia coli DEC13D]
gi|419367610|ref|ZP_13908758.1| transcription termination factor Rho [Escherichia coli DEC13E]
gi|419372488|ref|ZP_13913594.1| transcription termination factor Rho [Escherichia coli DEC14A]
gi|419377909|ref|ZP_13918923.1| transcription termination factor Rho [Escherichia coli DEC14B]
gi|419383300|ref|ZP_13924240.1| transcription termination factor Rho [Escherichia coli DEC14C]
gi|419388537|ref|ZP_13929401.1| transcription termination factor Rho [Escherichia coli DEC14D]
gi|419393900|ref|ZP_13934697.1| transcription termination factor Rho [Escherichia coli DEC15A]
gi|419399182|ref|ZP_13939941.1| transcription termination factor Rho [Escherichia coli DEC15B]
gi|419404427|ref|ZP_13945143.1| transcription termination factor Rho [Escherichia coli DEC15C]
gi|419409591|ref|ZP_13950272.1| transcription termination factor Rho [Escherichia coli DEC15D]
gi|419415149|ref|ZP_13955780.1| transcription termination factor Rho [Escherichia coli DEC15E]
gi|419702623|ref|ZP_14230213.1| transcription termination factor Rho [Escherichia coli SCI-07]
gi|419804788|ref|ZP_14329939.1| transcription termination factor Rho [Escherichia coli AI27]
gi|419812362|ref|ZP_14337229.1| transcription termination factor Rho [Escherichia coli O32:H37 str.
P4]
gi|419863322|ref|ZP_14385861.1| transcription termination factor Rho [Escherichia coli O103:H25
str. CVM9340]
gi|419868997|ref|ZP_14391223.1| transcription termination factor Rho [Escherichia coli O103:H2 str.
CVM9450]
gi|419874648|ref|ZP_14396562.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CVM9534]
gi|419879687|ref|ZP_14401118.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CVM9545]
gi|419888553|ref|ZP_14409049.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CVM9570]
gi|419893787|ref|ZP_14413749.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CVM9574]
gi|419902169|ref|ZP_14421428.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM9942]
gi|419905695|ref|ZP_14424651.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM10026]
gi|419912605|ref|ZP_14431055.1| transcription termination factor Rho [Escherichia coli KD1]
gi|419918857|ref|ZP_14437033.1| transcription termination factor Rho [Escherichia coli KD2]
gi|419926440|ref|ZP_14444207.1| transcription termination factor Rho [Escherichia coli 541-15]
gi|419926648|ref|ZP_14444399.1| transcription termination factor Rho [Escherichia coli 541-1]
gi|419937437|ref|ZP_14454333.1| transcription termination factor Rho [Escherichia coli 576-1]
gi|419938637|ref|ZP_14455463.1| transcription termination factor Rho [Escherichia coli 75]
gi|419943271|ref|ZP_14459831.1| transcription termination factor Rho [Escherichia coli HM605]
gi|419947704|ref|ZP_14464023.1| transcription termination factor Rho [Escherichia coli CUMT8]
gi|420088596|ref|ZP_14600467.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CVM9602]
gi|420094099|ref|ZP_14605712.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CVM9634]
gi|420099051|ref|ZP_14610297.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CVM9455]
gi|420107060|ref|ZP_14617428.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CVM9553]
gi|420113569|ref|ZP_14623301.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM10021]
gi|420119727|ref|ZP_14628981.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM10030]
gi|420126710|ref|ZP_14635423.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM10224]
gi|420131457|ref|ZP_14639893.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM9952]
gi|420272360|ref|ZP_14774706.1| transcription termination factor Rho [Escherichia coli PA22]
gi|420277913|ref|ZP_14780191.1| transcription termination factor Rho [Escherichia coli PA40]
gi|420283157|ref|ZP_14785387.1| transcription termination factor Rho [Escherichia coli TW06591]
gi|420284146|ref|ZP_14786367.1| transcription termination factor Rho [Escherichia coli TW10246]
gi|420289817|ref|ZP_14791987.1| transcription termination factor Rho [Escherichia coli TW11039]
gi|420300884|ref|ZP_14802926.1| transcription termination factor Rho [Escherichia coli TW09109]
gi|420306878|ref|ZP_14808863.1| transcription termination factor Rho [Escherichia coli TW10119]
gi|420312208|ref|ZP_14814133.1| transcription termination factor Rho [Escherichia coli EC1738]
gi|420317903|ref|ZP_14819771.1| transcription termination factor Rho [Escherichia coli EC1734]
gi|420322688|ref|ZP_14824507.1| transcription termination factor Rho [Shigella flexneri 2850-71]
gi|420327891|ref|ZP_14829629.1| transcription termination factor Rho [Shigella flexneri CCH060]
gi|420333545|ref|ZP_14835181.1| transcription termination factor Rho [Shigella flexneri K-1770]
gi|420338444|ref|ZP_14839999.1| transcription termination factor Rho [Shigella flexneri K-315]
gi|420344045|ref|ZP_14845506.1| transcription termination factor Rho [Shigella flexneri K-404]
gi|420349639|ref|ZP_14851012.1| transcription termination factor Rho [Shigella boydii 965-58]
gi|420355237|ref|ZP_14856309.1| transcription termination factor Rho [Shigella boydii 4444-74]
gi|420361219|ref|ZP_14862161.1| transcription termination factor Rho [Shigella sonnei 3226-85]
gi|420365850|ref|ZP_14866709.1| transcription termination factor Rho [Shigella sonnei 4822-66]
gi|420382754|ref|ZP_14882184.1| transcription termination factor Rho [Shigella dysenteriae 225-75]
gi|420388139|ref|ZP_14887470.1| transcription termination factor Rho [Escherichia coli EPECa12]
gi|420393917|ref|ZP_14893161.1| transcription termination factor Rho [Escherichia coli EPEC
C342-62]
gi|421684865|ref|ZP_16124646.1| transcription termination factor Rho [Shigella flexneri 1485-80]
gi|421777533|ref|ZP_16214128.1| transcription termination factor Rho [Escherichia coli AD30]
gi|421814835|ref|ZP_16250534.1| transcription termination factor Rho [Escherichia coli 8.0416]
gi|421820584|ref|ZP_16256066.1| transcription termination factor Rho [Escherichia coli 10.0821]
gi|421826559|ref|ZP_16261911.1| transcription termination factor Rho [Escherichia coli FRIK920]
gi|421833417|ref|ZP_16268694.1| transcription termination factor Rho [Escherichia coli PA7]
gi|422335442|ref|ZP_16416441.1| transcription termination factor Rho [Escherichia coli 4_1_47FAA]
gi|422355887|ref|ZP_16436591.1| transcription termination factor Rho [Escherichia coli MS 117-3]
gi|422361518|ref|ZP_16442140.1| transcription termination factor Rho [Escherichia coli MS 110-3]
gi|422364145|ref|ZP_16444673.1| transcription termination factor Rho [Escherichia coli MS 153-1]
gi|422371399|ref|ZP_16451779.1| transcription termination factor Rho [Escherichia coli MS 16-3]
gi|422373920|ref|ZP_16454215.1| transcription termination factor Rho [Escherichia coli MS 60-1]
gi|422381333|ref|ZP_16461501.1| transcription termination factor Rho [Escherichia coli MS 57-2]
gi|422752107|ref|ZP_16806012.1| transcription termination proteinRho [Escherichia coli H252]
gi|422757502|ref|ZP_16811320.1| transcription termination proteinRho [Escherichia coli H263]
gi|422764412|ref|ZP_16818162.1| transcription termination proteinRho [Escherichia coli E1167]
gi|422769188|ref|ZP_16822909.1| transcription termination protein Rho [Escherichia coli E1520]
gi|422773866|ref|ZP_16827547.1| transcription termination proteinRho [Escherichia coli E482]
gi|422778593|ref|ZP_16832241.1| transcription termination protein Rho [Escherichia coli H120]
gi|422784475|ref|ZP_16837255.1| transcription termination proteinRho [Escherichia coli TW10509]
gi|422789226|ref|ZP_16841957.1| transcription termination proteinRho [Escherichia coli H489]
gi|422794145|ref|ZP_16846836.1| transcription termination proteinRho [Escherichia coli TA007]
gi|422803378|ref|ZP_16851866.1| transcription termination proteinRho [Escherichia coli M863]
gi|422808149|ref|ZP_16856575.1| transcription termination proteinRho [Escherichia fergusonii B253]
gi|422818939|ref|ZP_16867151.1| transcription termination factor Rho [Escherichia coli M919]
gi|422831715|ref|ZP_16879852.1| transcription termination factor Rho [Escherichia coli B093]
gi|422836201|ref|ZP_16884249.1| transcription termination factor Rho [Escherichia coli E101]
gi|422842073|ref|ZP_16890039.1| transcription termination factor Rho [Escherichia coli H397]
gi|422963259|ref|ZP_16973103.1| transcription termination factor Rho [Escherichia coli H494]
gi|422977453|ref|ZP_16977405.1| transcription termination factor Rho [Escherichia coli TA124]
gi|422990049|ref|ZP_16980821.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
C227-11]
gi|422996947|ref|ZP_16987709.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
C236-11]
gi|423002041|ref|ZP_16992793.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
09-7901]
gi|423005697|ref|ZP_16996442.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
04-8351]
gi|423012258|ref|ZP_17002990.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-3677]
gi|423021489|ref|ZP_17012194.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4404]
gi|423026647|ref|ZP_17017341.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4522]
gi|423032474|ref|ZP_17023160.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4623]
gi|423035397|ref|ZP_17026074.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040469|ref|ZP_17031138.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047154|ref|ZP_17037813.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055693|ref|ZP_17044499.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057696|ref|ZP_17046495.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703307|ref|ZP_17677739.1| transcription termination factor Rho [Escherichia coli H730]
gi|423708091|ref|ZP_17682471.1| transcription termination factor Rho [Escherichia coli B799]
gi|423728007|ref|ZP_17701788.1| transcription termination factor Rho [Escherichia coli PA31]
gi|424080113|ref|ZP_17817052.1| transcription termination factor Rho [Escherichia coli FDA505]
gi|424086508|ref|ZP_17822979.1| transcription termination factor Rho [Escherichia coli FDA517]
gi|424092922|ref|ZP_17828829.1| transcription termination factor Rho [Escherichia coli FRIK1996]
gi|424099613|ref|ZP_17834850.1| transcription termination factor Rho [Escherichia coli FRIK1985]
gi|424105804|ref|ZP_17840519.1| transcription termination factor Rho [Escherichia coli FRIK1990]
gi|424112445|ref|ZP_17846655.1| transcription termination factor Rho [Escherichia coli 93-001]
gi|424118379|ref|ZP_17852198.1| transcription termination factor Rho [Escherichia coli PA3]
gi|424124579|ref|ZP_17857860.1| transcription termination factor Rho [Escherichia coli PA5]
gi|424130741|ref|ZP_17863629.1| transcription termination factor Rho [Escherichia coli PA9]
gi|424137056|ref|ZP_17869476.1| transcription termination factor Rho [Escherichia coli PA10]
gi|424143612|ref|ZP_17875448.1| transcription termination factor Rho [Escherichia coli PA14]
gi|424149983|ref|ZP_17881342.1| transcription termination factor Rho [Escherichia coli PA15]
gi|424163708|ref|ZP_17886760.1| transcription termination factor Rho [Escherichia coli PA24]
gi|424257360|ref|ZP_17892302.1| transcription termination factor Rho [Escherichia coli PA25]
gi|424336048|ref|ZP_17898238.1| transcription termination factor Rho [Escherichia coli PA28]
gi|424452314|ref|ZP_17903941.1| transcription termination factor Rho [Escherichia coli PA32]
gi|424458479|ref|ZP_17909560.1| transcription termination factor Rho [Escherichia coli PA33]
gi|424465007|ref|ZP_17915316.1| transcription termination factor Rho [Escherichia coli PA39]
gi|424471242|ref|ZP_17921024.1| transcription termination factor Rho [Escherichia coli PA41]
gi|424477733|ref|ZP_17927032.1| transcription termination factor Rho [Escherichia coli PA42]
gi|424483514|ref|ZP_17932480.1| transcription termination factor Rho [Escherichia coli TW07945]
gi|424489710|ref|ZP_17938232.1| transcription termination factor Rho [Escherichia coli TW09098]
gi|424496402|ref|ZP_17943922.1| transcription termination factor Rho [Escherichia coli TW09195]
gi|424503029|ref|ZP_17949898.1| transcription termination factor Rho [Escherichia coli EC4203]
gi|424509303|ref|ZP_17955655.1| transcription termination factor Rho [Escherichia coli EC4196]
gi|424516709|ref|ZP_17961280.1| transcription termination factor Rho [Escherichia coli TW14313]
gi|424522836|ref|ZP_17966925.1| transcription termination factor Rho [Escherichia coli TW14301]
gi|424528709|ref|ZP_17972404.1| transcription termination factor Rho [Escherichia coli EC4421]
gi|424534850|ref|ZP_17978182.1| transcription termination factor Rho [Escherichia coli EC4422]
gi|424540939|ref|ZP_17983867.1| transcription termination factor Rho [Escherichia coli EC4013]
gi|424547083|ref|ZP_17989400.1| transcription termination factor Rho [Escherichia coli EC4402]
gi|424553281|ref|ZP_17995092.1| transcription termination factor Rho [Escherichia coli EC4439]
gi|424559484|ref|ZP_18000862.1| transcription termination factor Rho [Escherichia coli EC4436]
gi|424565806|ref|ZP_18006792.1| transcription termination factor Rho [Escherichia coli EC4437]
gi|424571930|ref|ZP_18012450.1| transcription termination factor Rho [Escherichia coli EC4448]
gi|424578091|ref|ZP_18018109.1| transcription termination factor Rho [Escherichia coli EC1845]
gi|424583914|ref|ZP_18023544.1| transcription termination factor Rho [Escherichia coli EC1863]
gi|424746269|ref|ZP_18174515.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424765062|ref|ZP_18192468.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CFSAN001630]
gi|424768513|ref|ZP_18195783.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424818226|ref|ZP_18243377.1| transcription termination factor Rho [Escherichia fergusonii
ECD227]
gi|425100587|ref|ZP_18503307.1| transcription termination factor Rho [Escherichia coli 3.4870]
gi|425106661|ref|ZP_18508962.1| transcription termination factor Rho [Escherichia coli 5.2239]
gi|425112665|ref|ZP_18514570.1| transcription termination factor Rho [Escherichia coli 6.0172]
gi|425117403|ref|ZP_18519176.1| transcription termination factor Rho [Escherichia coli 8.0566]
gi|425122123|ref|ZP_18523795.1| transcription termination factor Rho [Escherichia coli 8.0569]
gi|425128594|ref|ZP_18529748.1| transcription termination factor Rho [Escherichia coli 8.0586]
gi|425134361|ref|ZP_18535197.1| transcription termination factor Rho [Escherichia coli 8.2524]
gi|425140954|ref|ZP_18541320.1| transcription termination factor Rho [Escherichia coli 10.0833]
gi|425146628|ref|ZP_18546605.1| transcription termination factor Rho [Escherichia coli 10.0869]
gi|425152741|ref|ZP_18552341.1| transcription termination factor Rho [Escherichia coli 88.0221]
gi|425158644|ref|ZP_18557891.1| transcription termination factor Rho [Escherichia coli PA34]
gi|425164961|ref|ZP_18563834.1| transcription termination factor Rho [Escherichia coli FDA506]
gi|425170709|ref|ZP_18569167.1| transcription termination factor Rho [Escherichia coli FDA507]
gi|425176754|ref|ZP_18574858.1| transcription termination factor Rho [Escherichia coli FDA504]
gi|425182814|ref|ZP_18580495.1| transcription termination factor Rho [Escherichia coli FRIK1999]
gi|425189111|ref|ZP_18586366.1| transcription termination factor Rho [Escherichia coli FRIK1997]
gi|425195841|ref|ZP_18592596.1| transcription termination factor Rho [Escherichia coli NE1487]
gi|425202319|ref|ZP_18598512.1| transcription termination factor Rho [Escherichia coli NE037]
gi|425208695|ref|ZP_18604477.1| transcription termination factor Rho [Escherichia coli FRIK2001]
gi|425214454|ref|ZP_18609841.1| transcription termination factor Rho [Escherichia coli PA4]
gi|425220582|ref|ZP_18615529.1| transcription termination factor Rho [Escherichia coli PA23]
gi|425227225|ref|ZP_18621676.1| transcription termination factor Rho [Escherichia coli PA49]
gi|425233385|ref|ZP_18627409.1| transcription termination factor Rho [Escherichia coli PA45]
gi|425239306|ref|ZP_18633011.1| transcription termination factor Rho [Escherichia coli TT12B]
gi|425245539|ref|ZP_18638831.1| transcription termination factor Rho [Escherichia coli MA6]
gi|425251733|ref|ZP_18644661.1| transcription termination factor Rho [Escherichia coli 5905]
gi|425257534|ref|ZP_18650015.1| transcription termination factor Rho [Escherichia coli CB7326]
gi|425263791|ref|ZP_18655767.1| transcription termination factor Rho [Escherichia coli EC96038]
gi|425269781|ref|ZP_18661392.1| transcription termination factor Rho [Escherichia coli 5412]
gi|425275074|ref|ZP_18666453.1| transcription termination factor Rho [Escherichia coli TW15901]
gi|425280233|ref|ZP_18671445.1| transcription termination factor Rho [Escherichia coli ARS4.2123]
gi|425285652|ref|ZP_18676664.1| transcription termination factor Rho [Escherichia coli TW00353]
gi|425290995|ref|ZP_18681803.1| transcription termination factor Rho [Escherichia coli 3006]
gi|425297256|ref|ZP_18687368.1| transcription termination factor Rho [Escherichia coli PA38]
gi|425302685|ref|ZP_18692563.1| transcription termination factor Rho [Escherichia coli 07798]
gi|425307588|ref|ZP_18697251.1| transcription termination factor Rho [Escherichia coli N1]
gi|425313953|ref|ZP_18703105.1| transcription termination factor Rho [Escherichia coli EC1735]
gi|425319934|ref|ZP_18708696.1| transcription termination factor Rho [Escherichia coli EC1736]
gi|425326072|ref|ZP_18714384.1| transcription termination factor Rho [Escherichia coli EC1737]
gi|425332385|ref|ZP_18720183.1| transcription termination factor Rho [Escherichia coli EC1846]
gi|425338561|ref|ZP_18725885.1| transcription termination factor Rho [Escherichia coli EC1847]
gi|425344853|ref|ZP_18731728.1| transcription termination factor Rho [Escherichia coli EC1848]
gi|425350694|ref|ZP_18737139.1| transcription termination factor Rho [Escherichia coli EC1849]
gi|425356968|ref|ZP_18743014.1| transcription termination factor Rho [Escherichia coli EC1850]
gi|425362917|ref|ZP_18748549.1| transcription termination factor Rho [Escherichia coli EC1856]
gi|425369182|ref|ZP_18754245.1| transcription termination factor Rho [Escherichia coli EC1862]
gi|425375487|ref|ZP_18760111.1| transcription termination factor Rho [Escherichia coli EC1864]
gi|425382119|ref|ZP_18766100.1| transcription termination factor Rho [Escherichia coli EC1865]
gi|425388374|ref|ZP_18771917.1| transcription termination factor Rho [Escherichia coli EC1866]
gi|425395101|ref|ZP_18778194.1| transcription termination factor Rho [Escherichia coli EC1868]
gi|425401157|ref|ZP_18783847.1| transcription termination factor Rho [Escherichia coli EC1869]
gi|425407253|ref|ZP_18789458.1| transcription termination factor Rho [Escherichia coli EC1870]
gi|425413611|ref|ZP_18795357.1| transcription termination factor Rho [Escherichia coli NE098]
gi|425419926|ref|ZP_18801181.1| transcription termination factor Rho [Escherichia coli FRIK523]
gi|425424804|ref|ZP_18805949.1| transcription termination factor Rho [Escherichia coli 0.1288]
gi|425431223|ref|ZP_18811816.1| transcription termination factor Rho [Escherichia coli 0.1304]
gi|427806980|ref|ZP_18974047.1| transcription termination factor Rho [Escherichia coli chi7122]
gi|427811568|ref|ZP_18978633.1| transcription termination factor Rho; polarity suppressor
[Escherichia coli]
gi|428949629|ref|ZP_19021886.1| transcription termination factor Rho [Escherichia coli 88.1467]
gi|428955702|ref|ZP_19027477.1| transcription termination factor Rho [Escherichia coli 88.1042]
gi|428961724|ref|ZP_19032988.1| transcription termination factor Rho [Escherichia coli 89.0511]
gi|428968327|ref|ZP_19039017.1| transcription termination factor Rho [Escherichia coli 90.0091]
gi|428974063|ref|ZP_19044359.1| transcription termination factor Rho [Escherichia coli 90.0039]
gi|428980522|ref|ZP_19050316.1| transcription termination factor Rho [Escherichia coli 90.2281]
gi|428986261|ref|ZP_19055635.1| transcription termination factor Rho [Escherichia coli 93.0055]
gi|428992417|ref|ZP_19061390.1| transcription termination factor Rho [Escherichia coli 93.0056]
gi|428998312|ref|ZP_19066889.1| transcription termination factor Rho [Escherichia coli 94.0618]
gi|429004702|ref|ZP_19072746.1| transcription termination factor Rho [Escherichia coli 95.0183]
gi|429010735|ref|ZP_19078120.1| transcription termination factor Rho [Escherichia coli 95.1288]
gi|429017203|ref|ZP_19084064.1| transcription termination factor Rho [Escherichia coli 95.0943]
gi|429023049|ref|ZP_19089551.1| transcription termination factor Rho [Escherichia coli 96.0428]
gi|429029125|ref|ZP_19095084.1| transcription termination factor Rho [Escherichia coli 96.0427]
gi|429035268|ref|ZP_19100776.1| transcription termination factor Rho [Escherichia coli 96.0939]
gi|429041376|ref|ZP_19106450.1| transcription termination factor Rho [Escherichia coli 96.0932]
gi|429047214|ref|ZP_19111911.1| transcription termination factor Rho [Escherichia coli 96.0107]
gi|429052554|ref|ZP_19117111.1| transcription termination factor Rho [Escherichia coli 97.0003]
gi|429058108|ref|ZP_19122353.1| transcription termination factor Rho [Escherichia coli 97.1742]
gi|429063627|ref|ZP_19127586.1| transcription termination factor Rho [Escherichia coli 97.0007]
gi|429069831|ref|ZP_19133255.1| transcription termination factor Rho [Escherichia coli 99.0672]
gi|429075610|ref|ZP_19138853.1| transcription termination factor Rho [Escherichia coli 99.0678]
gi|429080810|ref|ZP_19143936.1| transcription termination factor Rho [Escherichia coli 99.0713]
gi|429721529|ref|ZP_19256443.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773423|ref|ZP_19305437.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02030]
gi|429778788|ref|ZP_19310753.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782623|ref|ZP_19314547.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02092]
gi|429788016|ref|ZP_19319902.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02093]
gi|429794455|ref|ZP_19326295.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02281]
gi|429800415|ref|ZP_19332203.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02318]
gi|429804027|ref|ZP_19335783.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02913]
gi|429808675|ref|ZP_19340390.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-03439]
gi|429814374|ref|ZP_19346044.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-04080]
gi|429819577|ref|ZP_19351206.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-03943]
gi|429829037|ref|ZP_19360017.1| transcription termination factor Rho [Escherichia coli 96.0109]
gi|429835497|ref|ZP_19365729.1| transcription termination factor Rho [Escherichia coli 97.0010]
gi|429905897|ref|ZP_19371872.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910030|ref|ZP_19375991.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429915930|ref|ZP_19381875.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429920978|ref|ZP_19386904.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429926786|ref|ZP_19392696.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930717|ref|ZP_19396616.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937259|ref|ZP_19403144.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429942938|ref|ZP_19408809.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945617|ref|ZP_19411476.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953180|ref|ZP_19419024.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956526|ref|ZP_19422356.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432355820|ref|ZP_19599080.1| transcription termination factor Rho [Escherichia coli KTE2]
gi|432360237|ref|ZP_19603448.1| transcription termination factor Rho [Escherichia coli KTE4]
gi|432365037|ref|ZP_19608190.1| transcription termination factor Rho [Escherichia coli KTE5]
gi|432367261|ref|ZP_19610373.1| transcription termination factor Rho [Escherichia coli KTE10]
gi|432379018|ref|ZP_19621998.1| transcription termination factor Rho [Escherichia coli KTE12]
gi|432383680|ref|ZP_19626604.1| transcription termination factor Rho [Escherichia coli KTE15]
gi|432389588|ref|ZP_19632466.1| transcription termination factor Rho [Escherichia coli KTE16]
gi|432394457|ref|ZP_19637273.1| transcription termination factor Rho [Escherichia coli KTE21]
gi|432399734|ref|ZP_19642507.1| transcription termination factor Rho [Escherichia coli KTE25]
gi|432404185|ref|ZP_19646927.1| transcription termination factor Rho [Escherichia coli KTE26]
gi|432408858|ref|ZP_19651559.1| transcription termination factor Rho [Escherichia coli KTE28]
gi|432414048|ref|ZP_19656700.1| transcription termination factor Rho [Escherichia coli KTE39]
gi|432419308|ref|ZP_19661897.1| transcription termination factor Rho [Escherichia coli KTE44]
gi|432424188|ref|ZP_19666724.1| transcription termination factor Rho [Escherichia coli KTE178]
gi|432428453|ref|ZP_19670932.1| transcription termination factor Rho [Escherichia coli KTE181]
gi|432434008|ref|ZP_19676430.1| transcription termination factor Rho [Escherichia coli KTE187]
gi|432438741|ref|ZP_19681117.1| transcription termination factor Rho [Escherichia coli KTE188]
gi|432443315|ref|ZP_19685647.1| transcription termination factor Rho [Escherichia coli KTE189]
gi|432448459|ref|ZP_19690754.1| transcription termination factor Rho [Escherichia coli KTE191]
gi|432452045|ref|ZP_19694299.1| transcription termination factor Rho [Escherichia coli KTE193]
gi|432458926|ref|ZP_19701099.1| transcription termination factor Rho [Escherichia coli KTE201]
gi|432463153|ref|ZP_19705283.1| transcription termination factor Rho [Escherichia coli KTE204]
gi|432468118|ref|ZP_19710194.1| transcription termination factor Rho [Escherichia coli KTE205]
gi|432473137|ref|ZP_19715172.1| transcription termination factor Rho [Escherichia coli KTE206]
gi|432478149|ref|ZP_19720133.1| transcription termination factor Rho [Escherichia coli KTE208]
gi|432483199|ref|ZP_19725146.1| transcription termination factor Rho [Escherichia coli KTE210]
gi|432487542|ref|ZP_19729448.1| transcription termination factor Rho [Escherichia coli KTE212]
gi|432491614|ref|ZP_19733472.1| transcription termination factor Rho [Escherichia coli KTE213]
gi|432493036|ref|ZP_19734864.1| transcription termination factor Rho [Escherichia coli KTE214]
gi|432502341|ref|ZP_19744089.1| transcription termination factor Rho [Escherichia coli KTE216]
gi|432506676|ref|ZP_19748393.1| transcription termination factor Rho [Escherichia coli KTE220]
gi|432516172|ref|ZP_19753386.1| transcription termination factor Rho [Escherichia coli KTE224]
gi|432520001|ref|ZP_19757179.1| transcription termination factor Rho [Escherichia coli KTE228]
gi|432526257|ref|ZP_19763368.1| transcription termination factor Rho [Escherichia coli KTE230]
gi|432528643|ref|ZP_19765713.1| transcription termination factor Rho [Escherichia coli KTE233]
gi|432531576|ref|ZP_19768598.1| transcription termination factor Rho [Escherichia coli KTE234]
gi|432540169|ref|ZP_19777059.1| transcription termination factor Rho [Escherichia coli KTE235]
gi|432545619|ref|ZP_19782441.1| transcription termination factor Rho [Escherichia coli KTE236]
gi|432551098|ref|ZP_19787846.1| transcription termination factor Rho [Escherichia coli KTE237]
gi|432555865|ref|ZP_19792581.1| transcription termination factor Rho [Escherichia coli KTE47]
gi|432561051|ref|ZP_19797703.1| transcription termination factor Rho [Escherichia coli KTE49]
gi|432566166|ref|ZP_19802721.1| transcription termination factor Rho [Escherichia coli KTE51]
gi|432571058|ref|ZP_19807562.1| transcription termination factor Rho [Escherichia coli KTE53]
gi|432576027|ref|ZP_19812494.1| transcription termination factor Rho [Escherichia coli KTE55]
gi|432578055|ref|ZP_19814500.1| transcription termination factor Rho [Escherichia coli KTE56]
gi|432585311|ref|ZP_19821701.1| transcription termination factor Rho [Escherichia coli KTE57]
gi|432590237|ref|ZP_19826587.1| transcription termination factor Rho [Escherichia coli KTE58]
gi|432594997|ref|ZP_19831307.1| transcription termination factor Rho [Escherichia coli KTE60]
gi|432600040|ref|ZP_19836308.1| transcription termination factor Rho [Escherichia coli KTE62]
gi|432604619|ref|ZP_19840845.1| transcription termination factor Rho [Escherichia coli KTE66]
gi|432605221|ref|ZP_19841430.1| transcription termination factor Rho [Escherichia coli KTE67]
gi|432613786|ref|ZP_19849942.1| transcription termination factor Rho [Escherichia coli KTE72]
gi|432619097|ref|ZP_19855194.1| transcription termination factor Rho [Escherichia coli KTE75]
gi|432624154|ref|ZP_19860166.1| transcription termination factor Rho [Escherichia coli KTE76]
gi|432629408|ref|ZP_19865372.1| transcription termination factor Rho [Escherichia coli KTE77]
gi|432633733|ref|ZP_19869649.1| transcription termination factor Rho [Escherichia coli KTE80]
gi|432634691|ref|ZP_19870588.1| transcription termination factor Rho [Escherichia coli KTE81]
gi|432643385|ref|ZP_19879205.1| transcription termination factor Rho [Escherichia coli KTE83]
gi|432648454|ref|ZP_19884238.1| transcription termination factor Rho [Escherichia coli KTE86]
gi|432653438|ref|ZP_19889174.1| transcription termination factor Rho [Escherichia coli KTE87]
gi|432658019|ref|ZP_19893715.1| transcription termination factor Rho [Escherichia coli KTE93]
gi|432663034|ref|ZP_19898661.1| transcription termination factor Rho [Escherichia coli KTE111]
gi|432668380|ref|ZP_19903948.1| transcription termination factor Rho [Escherichia coli KTE116]
gi|432672879|ref|ZP_19908396.1| transcription termination factor Rho [Escherichia coli KTE119]
gi|432676978|ref|ZP_19912417.1| transcription termination factor Rho [Escherichia coli KTE142]
gi|432682567|ref|ZP_19917917.1| transcription termination factor Rho [Escherichia coli KTE143]
gi|432687616|ref|ZP_19922903.1| transcription termination factor Rho [Escherichia coli KTE156]
gi|432689113|ref|ZP_19924378.1| transcription termination factor Rho [Escherichia coli KTE161]
gi|432696649|ref|ZP_19931839.1| transcription termination factor Rho [Escherichia coli KTE162]
gi|432701298|ref|ZP_19936441.1| transcription termination factor Rho [Escherichia coli KTE169]
gi|432706518|ref|ZP_19941611.1| transcription termination factor Rho [Escherichia coli KTE171]
gi|432708178|ref|ZP_19943252.1| transcription termination factor Rho [Escherichia coli KTE6]
gi|432715643|ref|ZP_19950666.1| transcription termination factor Rho [Escherichia coli KTE8]
gi|432716415|ref|ZP_19951428.1| transcription termination factor Rho [Escherichia coli KTE9]
gi|432725252|ref|ZP_19960165.1| transcription termination factor Rho [Escherichia coli KTE17]
gi|432729861|ref|ZP_19964733.1| transcription termination factor Rho [Escherichia coli KTE18]
gi|432734538|ref|ZP_19969359.1| transcription termination factor Rho [Escherichia coli KTE45]
gi|432739283|ref|ZP_19974010.1| transcription termination factor Rho [Escherichia coli KTE42]
gi|432743550|ref|ZP_19978263.1| transcription termination factor Rho [Escherichia coli KTE23]
gi|432747757|ref|ZP_19982418.1| transcription termination factor Rho [Escherichia coli KTE43]
gi|432752238|ref|ZP_19986814.1| transcription termination factor Rho [Escherichia coli KTE29]
gi|432756740|ref|ZP_19991283.1| transcription termination factor Rho [Escherichia coli KTE22]
gi|432761623|ref|ZP_19996110.1| transcription termination factor Rho [Escherichia coli KTE46]
gi|432762643|ref|ZP_19997104.1| transcription termination factor Rho [Escherichia coli KTE48]
gi|432768160|ref|ZP_20002549.1| transcription termination factor Rho [Escherichia coli KTE50]
gi|432772559|ref|ZP_20006870.1| transcription termination factor Rho [Escherichia coli KTE54]
gi|432780945|ref|ZP_20015160.1| transcription termination factor Rho [Escherichia coli KTE59]
gi|432785770|ref|ZP_20019945.1| transcription termination factor Rho [Escherichia coli KTE63]
gi|432789809|ref|ZP_20023935.1| transcription termination factor Rho [Escherichia coli KTE65]
gi|432795044|ref|ZP_20029115.1| transcription termination factor Rho [Escherichia coli KTE78]
gi|432796555|ref|ZP_20030588.1| transcription termination factor Rho [Escherichia coli KTE79]
gi|432804018|ref|ZP_20037967.1| transcription termination factor Rho [Escherichia coli KTE84]
gi|432808031|ref|ZP_20041943.1| transcription termination factor Rho [Escherichia coli KTE91]
gi|432811533|ref|ZP_20045388.1| transcription termination factor Rho [Escherichia coli KTE101]
gi|432817574|ref|ZP_20051324.1| transcription termination factor Rho [Escherichia coli KTE115]
gi|432818573|ref|ZP_20052294.1| transcription termination factor Rho [Escherichia coli KTE118]
gi|432824705|ref|ZP_20058368.1| transcription termination factor Rho [Escherichia coli KTE123]
gi|432829401|ref|ZP_20063015.1| transcription termination factor Rho [Escherichia coli KTE135]
gi|432836785|ref|ZP_20070304.1| transcription termination factor Rho [Escherichia coli KTE136]
gi|432841639|ref|ZP_20075093.1| transcription termination factor Rho [Escherichia coli KTE140]
gi|432847004|ref|ZP_20079515.1| transcription termination factor Rho [Escherichia coli KTE141]
gi|432855790|ref|ZP_20083481.1| transcription termination factor Rho [Escherichia coli KTE144]
gi|432866663|ref|ZP_20089000.1| transcription termination factor Rho [Escherichia coli KTE146]
gi|432871677|ref|ZP_20091707.1| transcription termination factor Rho [Escherichia coli KTE147]
gi|432878151|ref|ZP_20095600.1| transcription termination factor Rho [Escherichia coli KTE154]
gi|432889584|ref|ZP_20102856.1| transcription termination factor Rho [Escherichia coli KTE158]
gi|432891380|ref|ZP_20104098.1| transcription termination factor Rho [Escherichia coli KTE165]
gi|432901375|ref|ZP_20111461.1| transcription termination factor Rho [Escherichia coli KTE192]
gi|432907606|ref|ZP_20115989.1| transcription termination factor Rho [Escherichia coli KTE194]
gi|432915454|ref|ZP_20120709.1| transcription termination factor Rho [Escherichia coli KTE190]
gi|432923054|ref|ZP_20125760.1| transcription termination factor Rho [Escherichia coli KTE173]
gi|432929744|ref|ZP_20130696.1| transcription termination factor Rho [Escherichia coli KTE175]
gi|432931530|ref|ZP_20131562.1| transcription termination factor Rho [Escherichia coli KTE184]
gi|432940602|ref|ZP_20138503.1| transcription termination factor Rho [Escherichia coli KTE183]
gi|432943478|ref|ZP_20140313.1| transcription termination factor Rho [Escherichia coli KTE196]
gi|432951044|ref|ZP_20144787.1| transcription termination factor Rho [Escherichia coli KTE197]
gi|432964591|ref|ZP_20153661.1| transcription termination factor Rho [Escherichia coli KTE202]
gi|432965545|ref|ZP_20154467.1| transcription termination factor Rho [Escherichia coli KTE203]
gi|432974056|ref|ZP_20162898.1| transcription termination factor Rho [Escherichia coli KTE207]
gi|432976008|ref|ZP_20164839.1| transcription termination factor Rho [Escherichia coli KTE209]
gi|432983291|ref|ZP_20172057.1| transcription termination factor Rho [Escherichia coli KTE211]
gi|432987629|ref|ZP_20176339.1| transcription termination factor Rho [Escherichia coli KTE215]
gi|432988281|ref|ZP_20176960.1| transcription termination factor Rho [Escherichia coli KTE217]
gi|432997567|ref|ZP_20186146.1| transcription termination factor Rho [Escherichia coli KTE218]
gi|433002162|ref|ZP_20190679.1| transcription termination factor Rho [Escherichia coli KTE223]
gi|433002683|ref|ZP_20191191.1| transcription termination factor Rho [Escherichia coli KTE227]
gi|433009985|ref|ZP_20198395.1| transcription termination factor Rho [Escherichia coli KTE229]
gi|433016103|ref|ZP_20204429.1| transcription termination factor Rho [Escherichia coli KTE104]
gi|433021041|ref|ZP_20209117.1| transcription termination factor Rho [Escherichia coli KTE105]
gi|433025694|ref|ZP_20213659.1| transcription termination factor Rho [Escherichia coli KTE106]
gi|433030733|ref|ZP_20218577.1| transcription termination factor Rho [Escherichia coli KTE109]
gi|433035707|ref|ZP_20223394.1| transcription termination factor Rho [Escherichia coli KTE112]
gi|433040799|ref|ZP_20228384.1| transcription termination factor Rho [Escherichia coli KTE113]
gi|433045319|ref|ZP_20232791.1| transcription termination factor Rho [Escherichia coli KTE117]
gi|433050255|ref|ZP_20237574.1| transcription termination factor Rho [Escherichia coli KTE120]
gi|433055415|ref|ZP_20242567.1| transcription termination factor Rho [Escherichia coli KTE122]
gi|433060308|ref|ZP_20247338.1| transcription termination factor Rho [Escherichia coli KTE124]
gi|433065254|ref|ZP_20252155.1| transcription termination factor Rho [Escherichia coli KTE125]
gi|433070150|ref|ZP_20256911.1| transcription termination factor Rho [Escherichia coli KTE128]
gi|433075063|ref|ZP_20261698.1| transcription termination factor Rho [Escherichia coli KTE129]
gi|433079996|ref|ZP_20266510.1| transcription termination factor Rho [Escherichia coli KTE131]
gi|433084710|ref|ZP_20271154.1| transcription termination factor Rho [Escherichia coli KTE133]
gi|433089511|ref|ZP_20275868.1| transcription termination factor Rho [Escherichia coli KTE137]
gi|433094179|ref|ZP_20280426.1| transcription termination factor Rho [Escherichia coli KTE138]
gi|433098613|ref|ZP_20284778.1| transcription termination factor Rho [Escherichia coli KTE139]
gi|433103381|ref|ZP_20289449.1| transcription termination factor Rho [Escherichia coli KTE145]
gi|433108042|ref|ZP_20294000.1| transcription termination factor Rho [Escherichia coli KTE148]
gi|433113062|ref|ZP_20298909.1| transcription termination factor Rho [Escherichia coli KTE150]
gi|433117715|ref|ZP_20303493.1| transcription termination factor Rho [Escherichia coli KTE153]
gi|433122401|ref|ZP_20308054.1| transcription termination factor Rho [Escherichia coli KTE157]
gi|433127417|ref|ZP_20312957.1| transcription termination factor Rho [Escherichia coli KTE160]
gi|433132364|ref|ZP_20317784.1| transcription termination factor Rho [Escherichia coli KTE163]
gi|433137038|ref|ZP_20322360.1| transcription termination factor Rho [Escherichia coli KTE166]
gi|433141491|ref|ZP_20326727.1| transcription termination factor Rho [Escherichia coli KTE167]
gi|433146420|ref|ZP_20331549.1| transcription termination factor Rho [Escherichia coli KTE168]
gi|433151443|ref|ZP_20336438.1| transcription termination factor Rho [Escherichia coli KTE174]
gi|433155973|ref|ZP_20340897.1| transcription termination factor Rho [Escherichia coli KTE176]
gi|433160942|ref|ZP_20345755.1| transcription termination factor Rho [Escherichia coli KTE177]
gi|433165801|ref|ZP_20350525.1| transcription termination factor Rho [Escherichia coli KTE179]
gi|433170798|ref|ZP_20355412.1| transcription termination factor Rho [Escherichia coli KTE180]
gi|433175678|ref|ZP_20360180.1| transcription termination factor Rho [Escherichia coli KTE232]
gi|433180659|ref|ZP_20365030.1| transcription termination factor Rho [Escherichia coli KTE82]
gi|433185522|ref|ZP_20369755.1| transcription termination factor Rho [Escherichia coli KTE85]
gi|433190589|ref|ZP_20374674.1| transcription termination factor Rho [Escherichia coli KTE88]
gi|433195841|ref|ZP_20379807.1| transcription termination factor Rho [Escherichia coli KTE90]
gi|433200549|ref|ZP_20384429.1| transcription termination factor Rho [Escherichia coli KTE94]
gi|433205533|ref|ZP_20389275.1| transcription termination factor Rho [Escherichia coli KTE95]
gi|433209933|ref|ZP_20393595.1| transcription termination factor Rho [Escherichia coli KTE97]
gi|433214812|ref|ZP_20398385.1| transcription termination factor Rho [Escherichia coli KTE99]
gi|433325294|ref|ZP_20402438.1| transcription termination factor Rho [Escherichia coli J96]
gi|442591309|ref|ZP_21009794.1| Transcription termination factor Rho [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|442596926|ref|ZP_21014727.1| Transcription termination factor Rho [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|442603408|ref|ZP_21018298.1| Transcription termination factor Rho [Escherichia coli Nissle 1917]
gi|443619856|ref|YP_007383712.1| transcription termination factor Rho [Escherichia coli APEC O78]
gi|444927521|ref|ZP_21246777.1| transcription termination factor Rho [Escherichia coli 09BKT078844]
gi|444933133|ref|ZP_21252131.1| transcription termination factor Rho [Escherichia coli 99.0814]
gi|444938600|ref|ZP_21257323.1| transcription termination factor Rho [Escherichia coli 99.0815]
gi|444944203|ref|ZP_21262678.1| transcription termination factor Rho [Escherichia coli 99.0816]
gi|444949703|ref|ZP_21267984.1| transcription termination factor Rho [Escherichia coli 99.0839]
gi|444955341|ref|ZP_21273397.1| transcription termination factor Rho [Escherichia coli 99.0848]
gi|444960708|ref|ZP_21278520.1| transcription termination factor Rho [Escherichia coli 99.1753]
gi|444965938|ref|ZP_21283489.1| transcription termination factor Rho [Escherichia coli 99.1775]
gi|444971965|ref|ZP_21289294.1| transcription termination factor Rho [Escherichia coli 99.1793]
gi|444977256|ref|ZP_21294324.1| transcription termination factor Rho [Escherichia coli 99.1805]
gi|444982599|ref|ZP_21299495.1| transcription termination factor Rho [Escherichia coli ATCC 700728]
gi|444988009|ref|ZP_21304776.1| transcription termination factor Rho [Escherichia coli PA11]
gi|444993321|ref|ZP_21309952.1| transcription termination factor Rho [Escherichia coli PA19]
gi|444998566|ref|ZP_21315055.1| transcription termination factor Rho [Escherichia coli PA13]
gi|445004111|ref|ZP_21320490.1| transcription termination factor Rho [Escherichia coli PA2]
gi|445009528|ref|ZP_21325748.1| transcription termination factor Rho [Escherichia coli PA47]
gi|445014608|ref|ZP_21330703.1| transcription termination factor Rho [Escherichia coli PA48]
gi|445020530|ref|ZP_21336485.1| transcription termination factor Rho [Escherichia coli PA8]
gi|445025891|ref|ZP_21341704.1| transcription termination factor Rho [Escherichia coli 7.1982]
gi|445031347|ref|ZP_21347002.1| transcription termination factor Rho [Escherichia coli 99.1781]
gi|445036769|ref|ZP_21352286.1| transcription termination factor Rho [Escherichia coli 99.1762]
gi|445042448|ref|ZP_21357809.1| transcription termination factor Rho [Escherichia coli PA35]
gi|445047655|ref|ZP_21362892.1| transcription termination factor Rho [Escherichia coli 3.4880]
gi|445053220|ref|ZP_21368229.1| transcription termination factor Rho [Escherichia coli 95.0083]
gi|445061259|ref|ZP_21373766.1| transcription termination factor Rho [Escherichia coli 99.0670]
gi|450195613|ref|ZP_21892567.1| transcription termination factor Rho [Escherichia coli SEPT362]
gi|450226426|ref|ZP_21897497.1| transcription termination factor Rho [Escherichia coli O08]
gi|450252885|ref|ZP_21902259.1| transcription termination factor Rho [Escherichia coli S17]
gi|452971830|ref|ZP_21970057.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4009]
gi|84027884|sp|P0AG32.1|RHO_ECO57 RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|84027885|sp|P0AG31.1|RHO_ECOL6 RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|84027886|sp|P0AG30.1|RHO_ECOLI RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|84027887|sp|P0AG33.1|RHO_SHIFL RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|34811292|pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
gi|34811293|pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
gi|34811294|pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
gi|34811295|pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
gi|34811296|pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
gi|34811297|pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
gi|56554635|pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
gi|56554637|pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
gi|56554639|pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
gi|56554641|pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
gi|56554643|pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
gi|56554645|pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
gi|56554647|pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
gi|56554649|pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
gi|56554651|pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
gi|56554653|pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
gi|56554655|pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
gi|56554657|pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
gi|61680408|pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
gi|61680410|pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
gi|61680412|pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
gi|61680414|pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
gi|61680416|pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
gi|61680418|pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
gi|147607|gb|AAA24532.1| transcription termination factor [Escherichia coli]
gi|148186|gb|AAA67583.1| transcription termination factor rho [Escherichia coli str. K-12
substr. MG1655]
gi|1790217|gb|AAC76788.1| transcription termination factor [Escherichia coli str. K-12
substr. MG1655]
gi|13364191|dbj|BAB38139.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
Sakai]
gi|30043183|gb|AAP18904.1| transcription termination factor Rho, polarity suppressor [Shigella
flexneri 2a str. 2457T]
gi|56383986|gb|AAN45293.2| transcription termination factor Rho, polarity suppressor [Shigella
flexneri 2a str. 301]
gi|73857774|gb|AAZ90481.1| transcription termination factor Rho; polarity suppressor [Shigella
sonnei Ss046]
gi|81243184|gb|ABB63894.1| transcription termination factor Rho [Shigella dysenteriae Sd197]
gi|81247548|gb|ABB68256.1| transcription termination factor Rho [Shigella boydii Sb227]
gi|85676265|dbj|BAE77515.1| transcription termination factor [Escherichia coli str. K12 substr.
W3110]
gi|157068936|gb|ABV08191.1| transcription termination factor Rho [Escherichia coli HS]
gi|157077943|gb|ABV17651.1| transcription termination factor Rho [Escherichia coli E24377A]
gi|169757118|gb|ACA79817.1| transcription termination factor Rho [Escherichia coli ATCC 8739]
gi|169891105|gb|ACB04812.1| transcription termination factor [Escherichia coli str. K-12
substr. DH10B]
gi|170121255|gb|EDS90186.1| transcription termination factor Rho [Escherichia albertii TW07627]
gi|170521391|gb|ACB19569.1| transcription termination factor Rho [Escherichia coli SMS-3-5]
gi|187429447|gb|ACD08721.1| transcription termination factor Rho [Shigella boydii CDC 3083-94]
gi|187768863|gb|EDU32707.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4196]
gi|188014278|gb|EDU52400.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4113]
gi|188489921|gb|EDU65024.1| transcription termination factor Rho [Escherichia coli 53638]
gi|189001536|gb|EDU70522.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4076]
gi|189359221|gb|EDU77640.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4401]
gi|189362557|gb|EDU80976.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4486]
gi|189365819|gb|EDU84235.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4501]
gi|189373337|gb|EDU91753.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC869]
gi|189376810|gb|EDU95226.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC508]
gi|190903901|gb|EDV63615.1| transcription termination factor Rho [Escherichia coli B7A]
gi|190905288|gb|EDV64925.1| transcription termination factor Rho [Escherichia coli F11]
gi|190905341|gb|EDV64975.1| transcription termination factor Rho [Escherichia coli F11]
gi|192926224|gb|EDV80863.1| transcription termination factor Rho [Escherichia coli E22]
gi|192955625|gb|EDV86101.1| transcription termination factor Rho [Escherichia coli E110019]
gi|194412183|gb|EDX28490.1| transcription termination factor Rho [Escherichia coli B171]
gi|194417149|gb|EDX33262.1| transcription termination factor Rho [Shigella dysenteriae 1012]
gi|194422481|gb|EDX38480.1| transcription termination factor Rho [Escherichia coli 101-1]
gi|208729225|gb|EDZ78826.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4206]
gi|208733310|gb|EDZ81997.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4045]
gi|208739681|gb|EDZ87363.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4042]
gi|209162058|gb|ACI39491.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EC4115]
gi|209753488|gb|ACI75051.1| UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
[Escherichia coli]
gi|209753490|gb|ACI75052.1| UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
[Escherichia coli]
gi|209753492|gb|ACI75053.1| UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
[Escherichia coli]
gi|209753494|gb|ACI75054.1| UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
[Escherichia coli]
gi|209753496|gb|ACI75055.1| UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
[Escherichia coli]
gi|209914515|dbj|BAG79589.1| transcription termination factor Rho [Escherichia coli SE11]
gi|215267183|emb|CAS11631.1| transcription termination factor [Escherichia coli O127:H6 str.
E2348/69]
gi|217320640|gb|EEC29064.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
TW14588]
gi|218354232|emb|CAV00889.1| transcription termination factor [Escherichia coli 55989]
gi|218358534|emb|CAQ91181.1| transcription termination factor [Escherichia fergusonii ATCC
35469]
gi|218363114|emb|CAR00754.1| transcription termination factor [Escherichia coli IAI1]
gi|218367618|emb|CAR05401.1| transcription termination factor [Escherichia coli S88]
gi|218429626|emb|CAR10587.2| transcription termination factor [Escherichia coli ED1a]
gi|218434516|emb|CAR15442.1| transcription termination factor [Escherichia coli UMN026]
gi|222035484|emb|CAP78229.1| Transcription termination factor rho [Escherichia coli LF82]
gi|227834473|gb|EEJ44939.1| transcription termination factor Rho [Escherichia coli 83972]
gi|238863679|gb|ACR65677.1| transcription termination factor [Escherichia coli BW2952]
gi|254595180|gb|ACT74541.1| transcription termination factor [Escherichia coli O157:H7 str.
TW14359]
gi|257756460|dbj|BAI27962.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
11368]
gi|257761588|dbj|BAI33085.1| transcription termination factor Rho [Escherichia coli O103:H2 str.
12009]
gi|257766864|dbj|BAI38359.1| transcription termination factor Rho [Escherichia coli O111:H- str.
11128]
gi|260451372|gb|ACX41794.1| transcription termination factor Rho [Escherichia coli DH1]
gi|284923887|emb|CBG36986.1| transcription termination factor [Escherichia coli 042]
gi|290765071|gb|ADD59032.1| Transcription termination factor rho [Escherichia coli O55:H7 str.
CB9615]
gi|291321478|gb|EFE60916.1| transcription termination factor Rho [Escherichia coli B088]
gi|291425523|gb|EFE98561.1| transcription termination factor Rho [Escherichia coli FVEC1412]
gi|291431016|gb|EFF04011.1| transcription termination factor Rho [Escherichia coli B185]
gi|291468174|gb|EFF10671.1| transcription termination factor Rho [Escherichia coli B354]
gi|294493548|gb|ADE92304.1| transcription termination factor Rho [Escherichia coli IHE3034]
gi|298276388|gb|EFI17907.1| transcription termination factor rho [Escherichia coli FVEC1302]
gi|299878038|gb|EFI86249.1| transcription termination factor Rho [Escherichia coli MS 196-1]
gi|300300755|gb|EFJ57140.1| transcription termination factor Rho [Escherichia coli MS 185-1]
gi|300308064|gb|EFJ62584.1| transcription termination factor Rho [Escherichia coli MS 200-1]
gi|300317869|gb|EFJ67653.1| transcription termination factor Rho [Escherichia coli MS 175-1]
gi|300355822|gb|EFJ71692.1| transcription termination factor Rho [Escherichia coli MS 198-1]
gi|300398063|gb|EFJ81601.1| transcription termination factor Rho [Escherichia coli MS 69-1]
gi|300403986|gb|EFJ87524.1| transcription termination factor Rho [Escherichia coli MS 84-1]
gi|300407956|gb|EFJ91494.1| transcription termination factor Rho [Escherichia coli MS 45-1]
gi|300411580|gb|EFJ94890.1| transcription termination factor Rho [Escherichia coli MS 115-1]
gi|300420427|gb|EFK03738.1| transcription termination factor Rho [Escherichia coli MS 182-1]
gi|300453022|gb|EFK16642.1| transcription termination factor Rho [Escherichia coli MS 116-1]
gi|300455136|gb|EFK18629.1| transcription termination factor Rho [Escherichia coli MS 21-1]
gi|300462042|gb|EFK25535.1| transcription termination factor Rho [Escherichia coli MS 187-1]
gi|300524100|gb|EFK45169.1| transcription termination factor Rho [Escherichia coli MS 119-7]
gi|300528714|gb|EFK49776.1| transcription termination factor Rho [Escherichia coli MS 107-1]
gi|300840977|gb|EFK68737.1| transcription termination factor Rho [Escherichia coli MS 124-1]
gi|300847699|gb|EFK75459.1| transcription termination factor Rho [Escherichia coli MS 78-1]
gi|301075621|gb|EFK90427.1| transcription termination factor Rho [Escherichia coli MS 146-1]
gi|305851548|gb|EFM52002.1| transcription termination factor Rho [Escherichia coli NC101]
gi|306906622|gb|EFN37134.1| transcription termination factor Rho [Escherichia coli W]
gi|307628846|gb|ADN73150.1| transcription termination factor Rho [Escherichia coli UM146]
gi|308120160|gb|EFO57422.1| transcription termination factor Rho [Escherichia coli MS 145-7]
gi|308927600|gb|EFP73069.1| transcription termination factor Rho [Shigella dysenteriae 1617]
gi|309704222|emb|CBJ03569.1| transcription termination factor [Escherichia coli ETEC H10407]
gi|310334312|gb|EFQ00517.1| transcription termination factor Rho [Escherichia coli 1827-70]
gi|312286036|gb|EFR13954.1| transcription termination factor Rho [Escherichia coli 2362-75]
gi|313647773|gb|EFS12220.1| transcription termination factor Rho [Shigella flexneri 2a str.
2457T]
gi|315063078|gb|ADT77405.1| transcription termination factor [Escherichia coli W]
gi|315138361|dbj|BAJ45520.1| transcription termination factor rho [Escherichia coli DH1]
gi|315254147|gb|EFU34115.1| transcription termination factor Rho [Escherichia coli MS 85-1]
gi|315284667|gb|EFU44112.1| transcription termination factor Rho [Escherichia coli MS 110-3]
gi|315293133|gb|EFU52485.1| transcription termination factor Rho [Escherichia coli MS 153-1]
gi|315296846|gb|EFU56135.1| transcription termination factor Rho [Escherichia coli MS 16-3]
gi|315618519|gb|EFU99105.1| transcription termination factor Rho [Escherichia coli 3431]
gi|320176025|gb|EFW51094.1| Transcription termination factor Rho [Shigella dysenteriae CDC
74-1112]
gi|320178073|gb|EFW53053.1| Transcription termination factor Rho [Shigella boydii ATCC 9905]
gi|320185444|gb|EFW60213.1| Transcription termination factor Rho [Shigella flexneri CDC 796-83]
gi|320191124|gb|EFW65774.1| Transcription termination factor Rho [Escherichia coli O157:H7 str.
EC1212]
gi|320197595|gb|EFW72207.1| Transcription termination factor Rho [Escherichia coli WV_060327]
gi|320198509|gb|EFW73110.1| Transcription termination factor Rho [Escherichia coli EC4100B]
gi|320639267|gb|EFX08889.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
G5101]
gi|320644652|gb|EFX13702.1| transcription termination factor Rho [Escherichia coli O157:H- str.
493-89]
gi|320649977|gb|EFX18480.1| transcription termination factor Rho [Escherichia coli O157:H- str.
H 2687]
gi|320655323|gb|EFX23265.1| transcription termination factor Rho [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660948|gb|EFX28391.1| transcription termination factor Rho [Escherichia coli O55:H7 str.
USDA 5905]
gi|320666072|gb|EFX33086.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
LSU-61]
gi|323155184|gb|EFZ41368.1| transcription termination factor Rho [Escherichia coli EPECa14]
gi|323161154|gb|EFZ47072.1| transcription termination factor Rho [Escherichia coli E128010]
gi|323167636|gb|EFZ53341.1| transcription termination factor Rho [Shigella sonnei 53G]
gi|323173399|gb|EFZ59028.1| transcription termination factor Rho [Escherichia coli LT-68]
gi|323177792|gb|EFZ63376.1| transcription termination factor Rho [Escherichia coli OK1180]
gi|323182555|gb|EFZ67959.1| transcription termination factor Rho [Escherichia coli OK1357]
gi|323189495|gb|EFZ74775.1| transcription termination factor Rho [Escherichia coli RN587/1]
gi|323380858|gb|ADX53126.1| transcription termination factor Rho [Escherichia coli KO11FL]
gi|323934173|gb|EGB30604.1| transcription termination protein Rho [Escherichia coli E1520]
gi|323938921|gb|EGB35140.1| transcription termination proteinRho [Escherichia coli E482]
gi|323943815|gb|EGB39910.1| transcription termination protein Rho [Escherichia coli H120]
gi|323949333|gb|EGB45223.1| transcription termination proteinRho [Escherichia coli H252]
gi|323954097|gb|EGB49894.1| transcription termination proteinRho [Escherichia coli H263]
gi|323959039|gb|EGB54708.1| transcription termination proteinRho [Escherichia coli H489]
gi|323964030|gb|EGB59520.1| transcription termination proteinRho [Escherichia coli M863]
gi|323969376|gb|EGB64675.1| transcription termination proteinRho [Escherichia coli TA007]
gi|323974366|gb|EGB69494.1| transcription termination proteinRho [Escherichia coli TW10509]
gi|324007442|gb|EGB76661.1| transcription termination factor Rho [Escherichia coli MS 57-2]
gi|324014728|gb|EGB83947.1| transcription termination factor Rho [Escherichia coli MS 60-1]
gi|324016168|gb|EGB85387.1| transcription termination factor Rho [Escherichia coli MS 117-3]
gi|324111009|gb|EGC04996.1| transcription termination proteinRho [Escherichia fergusonii B253]
gi|324115754|gb|EGC09689.1| transcription termination proteinRho [Escherichia coli E1167]
gi|325499246|gb|EGC97105.1| transcription termination factor Rho [Escherichia fergusonii
ECD227]
gi|326344240|gb|EGD68000.1| Transcription termination factor Rho [Escherichia coli O157:H7 str.
1125]
gi|326347933|gb|EGD71647.1| Transcription termination factor Rho [Escherichia coli O157:H7 str.
1044]
gi|327250634|gb|EGE62340.1| transcription termination factor Rho [Escherichia coli STEC_7v]
gi|330908084|gb|EGH36603.1| transcription termination factor Rho [Escherichia coli AA86]
gi|331052695|gb|EGI24730.1| transcription termination factor Rho [Escherichia coli TA206]
gi|331057326|gb|EGI29315.1| transcription termination factor Rho [Escherichia coli TA143]
gi|331062100|gb|EGI34022.1| transcription termination factor Rho [Escherichia coli TA271]
gi|331077202|gb|EGI48416.1| transcription termination factor Rho [Escherichia coli H299]
gi|332084703|gb|EGI89891.1| transcription termination factor Rho [Shigella boydii 5216-82]
gi|332084959|gb|EGI90141.1| transcription termination factor Rho [Shigella dysenteriae 155-74]
gi|332089051|gb|EGI94162.1| transcription termination factor Rho [Shigella boydii 3594-74]
gi|332345762|gb|AEE59096.1| transcription termination factor Rho [Escherichia coli UMNK88]
gi|332750993|gb|EGJ81398.1| transcription termination factor Rho [Shigella flexneri 4343-70]
gi|332751082|gb|EGJ81486.1| transcription termination factor Rho [Shigella flexneri K-671]
gi|332751913|gb|EGJ82308.1| transcription termination factor Rho [Shigella flexneri 2747-71]
gi|332764376|gb|EGJ94611.1| transcription termination factor Rho [Shigella flexneri 2930-71]
gi|332996855|gb|EGK16475.1| transcription termination factor Rho [Shigella flexneri VA-6]
gi|332997907|gb|EGK17514.1| transcription termination factor Rho [Shigella flexneri K-218]
gi|332998276|gb|EGK17878.1| transcription termination factor Rho [Shigella flexneri K-272]
gi|333013592|gb|EGK32959.1| transcription termination factor Rho [Shigella flexneri K-304]
gi|333013815|gb|EGK33178.1| transcription termination factor Rho [Shigella flexneri K-227]
gi|333971957|gb|AEG38762.1| Transcription termination factor [Escherichia coli NA114]
gi|335573489|gb|EGM59844.1| transcription termination factor Rho [Shigella flexneri J1713]
gi|338768004|gb|EGP22810.1| Transcription termination factor Rho [Escherichia coli PCN033]
gi|339417513|gb|AEJ59185.1| transcription termination factor Rho [Escherichia coli UMNF18]
gi|340731787|gb|EGR60926.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
01-09591]
gi|340737935|gb|EGR72188.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
LB226692]
gi|341921454|gb|EGT71054.1| rho [Escherichia coli O104:H4 str. C227-11]
gi|342362608|gb|EGU26725.1| transcription termination factor Rho [Escherichia coli XH140A]
gi|342929367|gb|EGU98089.1| transcription termination factor Rho [Escherichia coli MS 79-10]
gi|344192644|gb|EGV46733.1| transcription termination factor Rho [Escherichia coli XH001]
gi|345331058|gb|EGW63519.1| transcription termination factor Rho [Escherichia coli
STEC_C165-02]
gi|345331357|gb|EGW63817.1| transcription termination factor Rho [Escherichia coli 2534-86]
gi|345333739|gb|EGW66186.1| transcription termination factor Rho [Escherichia coli STEC_B2F1]
gi|345347208|gb|EGW79522.1| transcription termination factor Rho [Escherichia coli STEC_94C]
gi|345348714|gb|EGW81007.1| transcription termination factor Rho [Escherichia coli 3030-1]
gi|345353308|gb|EGW85542.1| transcription termination factor Rho [Escherichia coli
STEC_DG131-3]
gi|345357620|gb|EGW89812.1| transcription termination factor Rho [Escherichia coli STEC_EH250]
gi|345369514|gb|EGX01497.1| transcription termination factor Rho [Escherichia coli STEC_MHI813]
gi|345369671|gb|EGX01653.1| transcription termination factor Rho [Escherichia coli G58-1]
gi|345372006|gb|EGX03973.1| transcription termination factor Rho [Escherichia coli STEC_H.1.8]
gi|345384803|gb|EGX14661.1| transcription termination factor Rho [Escherichia coli STEC_S1191]
gi|345389757|gb|EGX19558.1| transcription termination factor Rho [Escherichia coli TX1999]
gi|349740412|gb|AEQ15118.1| transcription termination factor [Escherichia coli O7:K1 str. CE10]
gi|354857564|gb|EHF18018.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
C236-11]
gi|354861116|gb|EHF21556.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
C227-11]
gi|354862924|gb|EHF23360.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
04-8351]
gi|354870520|gb|EHF30923.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
09-7901]
gi|354876373|gb|EHF36734.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-3677]
gi|354885220|gb|EHF45524.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4404]
gi|354888620|gb|EHF48875.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4522]
gi|354892100|gb|EHF52313.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4623]
gi|354904449|gb|EHF64542.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907626|gb|EHF67684.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354910002|gb|EHF70031.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354912516|gb|EHF72516.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354920311|gb|EHF80246.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-4632 C5]
gi|355349581|gb|EHF98785.1| transcription termination factor Rho [Escherichia coli cloneA_i1]
gi|359333918|dbj|BAL40365.1| transcription termination factor [Escherichia coli str. K-12
substr. MDS42]
gi|371591755|gb|EHN80694.1| transcription termination factor Rho [Escherichia coli H494]
gi|371593301|gb|EHN82184.1| transcription termination factor Rho [Escherichia coli TA124]
gi|371602137|gb|EHN90848.1| transcription termination factor Rho [Escherichia coli H397]
gi|371609550|gb|EHN98087.1| transcription termination factor Rho [Escherichia coli E101]
gi|371616187|gb|EHO04554.1| transcription termination factor Rho [Escherichia coli B093]
gi|373243592|gb|EHP63094.1| transcription termination factor Rho [Escherichia coli 4_1_47FAA]
gi|374361226|gb|AEZ42933.1| transcription termination factor Rho [Escherichia coli O55:H7 str.
RM12579]
gi|375322926|gb|EHS68656.1| transcription termination factor Rho [Escherichia coli O157:H43
str. T22]
gi|377838908|gb|EHU04012.1| transcription termination factor Rho [Escherichia coli DEC1C]
gi|377839029|gb|EHU04131.1| transcription termination factor Rho [Escherichia coli DEC1A]
gi|377841705|gb|EHU06766.1| transcription termination factor Rho [Escherichia coli DEC1B]
gi|377852821|gb|EHU17733.1| transcription termination factor Rho [Escherichia coli DEC1D]
gi|377855875|gb|EHU20738.1| transcription termination factor Rho [Escherichia coli DEC1E]
gi|377858220|gb|EHU23063.1| transcription termination factor Rho [Escherichia coli DEC2A]
gi|377870185|gb|EHU34873.1| transcription termination factor Rho [Escherichia coli DEC2B]
gi|377872159|gb|EHU36808.1| transcription termination factor Rho [Escherichia coli DEC2C]
gi|377874311|gb|EHU38940.1| transcription termination factor Rho [Escherichia coli DEC2D]
gi|377885969|gb|EHU50458.1| transcription termination factor Rho [Escherichia coli DEC2E]
gi|377889341|gb|EHU53805.1| transcription termination factor Rho [Escherichia coli DEC3B]
gi|377900987|gb|EHU65311.1| transcription termination factor Rho [Escherichia coli DEC3A]
gi|377901872|gb|EHU66182.1| transcription termination factor Rho [Escherichia coli DEC3C]
gi|377903727|gb|EHU68017.1| transcription termination factor Rho [Escherichia coli DEC3D]
gi|377906360|gb|EHU70603.1| transcription termination factor Rho [Escherichia coli DEC3E]
gi|377917040|gb|EHU81109.1| transcription termination factor Rho [Escherichia coli DEC3F]
gi|377922964|gb|EHU86935.1| transcription termination factor Rho [Escherichia coli DEC4A]
gi|377926632|gb|EHU90562.1| transcription termination factor Rho [Escherichia coli DEC4B]
gi|377937324|gb|EHV01105.1| transcription termination factor Rho [Escherichia coli DEC4D]
gi|377937821|gb|EHV01594.1| transcription termination factor Rho [Escherichia coli DEC4C]
gi|377952223|gb|EHV15819.1| transcription termination factor Rho [Escherichia coli DEC4F]
gi|377957026|gb|EHV20563.1| transcription termination factor Rho [Escherichia coli DEC4E]
gi|377957327|gb|EHV20862.1| transcription termination factor Rho [Escherichia coli DEC5A]
gi|377960941|gb|EHV24416.1| transcription termination factor Rho [Escherichia coli DEC5B]
gi|377969344|gb|EHV32722.1| transcription termination factor Rho [Escherichia coli DEC5C]
gi|377970358|gb|EHV33720.1| transcription termination factor Rho [Escherichia coli DEC5D]
gi|377980196|gb|EHV43462.1| transcription termination factor Rho [Escherichia coli DEC5E]
gi|377988716|gb|EHV51891.1| transcription termination factor Rho [Escherichia coli DEC6B]
gi|377989075|gb|EHV52244.1| transcription termination factor Rho [Escherichia coli DEC6A]
gi|377992839|gb|EHV55981.1| transcription termination factor Rho [Escherichia coli DEC6C]
gi|378003580|gb|EHV66621.1| transcription termination factor Rho [Escherichia coli DEC6D]
gi|378006228|gb|EHV69214.1| transcription termination factor Rho [Escherichia coli DEC6E]
gi|378010036|gb|EHV72983.1| transcription termination factor Rho [Escherichia coli DEC7A]
gi|378020921|gb|EHV83649.1| transcription termination factor Rho [Escherichia coli DEC7C]
gi|378023923|gb|EHV86588.1| transcription termination factor Rho [Escherichia coli DEC7D]
gi|378028404|gb|EHV91022.1| transcription termination factor Rho [Escherichia coli DEC7B]
gi|378035089|gb|EHV97651.1| transcription termination factor Rho [Escherichia coli DEC7E]
gi|378042886|gb|EHW05330.1| transcription termination factor Rho [Escherichia coli DEC8A]
gi|378043160|gb|EHW05597.1| transcription termination factor Rho [Escherichia coli DEC8B]
gi|378048139|gb|EHW10494.1| transcription termination factor Rho [Escherichia coli DEC8C]
gi|378057696|gb|EHW19919.1| transcription termination factor Rho [Escherichia coli DEC8D]
gi|378073449|gb|EHW35500.1| transcription termination factor Rho [Escherichia coli DEC9B]
gi|378074526|gb|EHW36561.1| transcription termination factor Rho [Escherichia coli DEC8E]
gi|378078616|gb|EHW40597.1| transcription termination factor Rho [Escherichia coli DEC9C]
gi|378083027|gb|EHW44965.1| transcription termination factor Rho [Escherichia coli DEC9A]
gi|378086478|gb|EHW48353.1| transcription termination factor Rho [Escherichia coli DEC9D]
gi|378088941|gb|EHW50790.1| transcription termination factor Rho [Escherichia coli DEC9E]
gi|378096939|gb|EHW58705.1| transcription termination factor Rho [Escherichia coli DEC10A]
gi|378102196|gb|EHW63878.1| transcription termination factor Rho [Escherichia coli DEC10B]
gi|378119685|gb|EHW81174.1| transcription termination factor Rho [Escherichia coli DEC10C]
gi|378121874|gb|EHW83322.1| transcription termination factor Rho [Escherichia coli DEC10D]
gi|378124164|gb|EHW85576.1| transcription termination factor Rho [Escherichia coli DEC10E]
gi|378124612|gb|EHW86017.1| transcription termination factor Rho [Escherichia coli DEC11A]
gi|378138139|gb|EHW99398.1| transcription termination factor Rho [Escherichia coli DEC11B]
gi|378144012|gb|EHX05188.1| transcription termination factor Rho [Escherichia coli DEC11D]
gi|378146055|gb|EHX07209.1| transcription termination factor Rho [Escherichia coli DEC11C]
gi|378161486|gb|EHX22463.1| transcription termination factor Rho [Escherichia coli DEC12B]
gi|378164553|gb|EHX25495.1| transcription termination factor Rho [Escherichia coli DEC12A]
gi|378165420|gb|EHX26354.1| transcription termination factor Rho [Escherichia coli DEC12C]
gi|378179370|gb|EHX40100.1| transcription termination factor Rho [Escherichia coli DEC12D]
gi|378182414|gb|EHX43066.1| transcription termination factor Rho [Escherichia coli DEC13A]
gi|378182500|gb|EHX43151.1| transcription termination factor Rho [Escherichia coli DEC12E]
gi|378195598|gb|EHX56094.1| transcription termination factor Rho [Escherichia coli DEC13C]
gi|378195685|gb|EHX56180.1| transcription termination factor Rho [Escherichia coli DEC13B]
gi|378198097|gb|EHX58569.1| transcription termination factor Rho [Escherichia coli DEC13D]
gi|378209509|gb|EHX69879.1| transcription termination factor Rho [Escherichia coli DEC13E]
gi|378212196|gb|EHX72520.1| transcription termination factor Rho [Escherichia coli DEC14A]
gi|378214728|gb|EHX75031.1| transcription termination factor Rho [Escherichia coli DEC14B]
gi|378224098|gb|EHX84305.1| transcription termination factor Rho [Escherichia coli DEC14C]
gi|378227613|gb|EHX87782.1| transcription termination factor Rho [Escherichia coli DEC14D]
gi|378233807|gb|EHX93891.1| transcription termination factor Rho [Escherichia coli DEC15A]
gi|378239904|gb|EHX99881.1| transcription termination factor Rho [Escherichia coli DEC15B]
gi|378242786|gb|EHY02737.1| transcription termination factor Rho [Escherichia coli DEC15C]
gi|378250863|gb|EHY10765.1| transcription termination factor Rho [Escherichia coli DEC15D]
gi|378255672|gb|EHY15528.1| transcription termination factor Rho [Escherichia coli DEC15E]
gi|380346230|gb|EIA34528.1| transcription termination factor Rho [Escherichia coli SCI-07]
gi|383105217|gb|AFG42726.1| Transcription termination factor rho [Escherichia coli P12b]
gi|383390814|gb|AFH15772.1| transcription termination factor Rho [Escherichia coli KO11FL]
gi|383407385|gb|AFH13628.1| transcription termination factor Rho [Escherichia coli W]
gi|384472172|gb|EIE56232.1| transcription termination factor Rho [Escherichia coli AI27]
gi|385154732|gb|EIF16741.1| transcription termination factor Rho [Escherichia coli O32:H37 str.
P4]
gi|385537497|gb|EIF84368.1| transcription termination factor Rho [Escherichia coli M919]
gi|385708446|gb|EIG45458.1| transcription termination factor Rho [Escherichia coli H730]
gi|385709004|gb|EIG46006.1| transcription termination factor Rho [Escherichia coli B799]
gi|386120402|gb|EIG69031.1| transcription termination factor Rho [Escherichia sp. 4_1_40B]
gi|386139933|gb|EIG81088.1| transcription termination factor Rho [Escherichia coli 1.2741]
gi|386145712|gb|EIG92169.1| transcription termination factor Rho [Escherichia coli 97.0246]
gi|386152271|gb|EIH03560.1| transcription termination factor Rho [Escherichia coli 5.0588]
gi|386155117|gb|EIH11472.1| transcription termination factor Rho [Escherichia coli 97.0259]
gi|386161200|gb|EIH23003.1| transcription termination factor Rho [Escherichia coli 1.2264]
gi|386165869|gb|EIH32389.1| transcription termination factor Rho [Escherichia coli 96.0497]
gi|386170348|gb|EIH42408.1| transcription termination factor Rho [Escherichia coli 99.0741]
gi|386179672|gb|EIH57151.1| transcription termination factor Rho [Escherichia coli 3.2608]
gi|386182768|gb|EIH65524.1| transcription termination factor Rho [Escherichia coli 93.0624]
gi|386187040|gb|EIH75863.1| transcription termination factor Rho [Escherichia coli 4.0522]
gi|386193258|gb|EIH87554.1| transcription termination factor Rho [Escherichia coli JB1-95]
gi|386202700|gb|EII01691.1| transcription termination factor Rho [Escherichia coli 96.154]
gi|386207976|gb|EII12481.1| transcription termination factor Rho [Escherichia coli 5.0959]
gi|386211907|gb|EII22358.1| transcription termination factor Rho [Escherichia coli 9.0111]
gi|386219724|gb|EII36188.1| transcription termination factor Rho [Escherichia coli 4.0967]
gi|386221364|gb|EII43808.1| transcription termination factor Rho [Escherichia coli 2.3916]
gi|386228351|gb|EII55707.1| transcription termination factor Rho [Escherichia coli 3.3884]
gi|386234528|gb|EII66506.1| transcription termination factor Rho [Escherichia coli 2.4168]
gi|386237991|gb|EII74931.1| transcription termination factor Rho [Escherichia coli 3.2303]
gi|386244886|gb|EII86616.1| transcription termination factor Rho [Escherichia coli 3003]
gi|386250351|gb|EII96518.1| transcription termination factor Rho [Escherichia coli TW07793]
gi|386252106|gb|EIJ01798.1| transcription termination factor Rho [Escherichia coli B41]
gi|386260394|gb|EIJ15868.1| transcription termination factor Rho [Escherichia coli 900105
(10e)]
gi|386798470|gb|AFJ31504.1| transcription termination factor Rho [Escherichia coli Xuzhou21]
gi|388342902|gb|EIL08903.1| transcription termination factor Rho [Escherichia coli O103:H25
str. CVM9340]
gi|388343330|gb|EIL09294.1| transcription termination factor Rho [Escherichia coli O103:H2 str.
CVM9450]
gi|388350541|gb|EIL15900.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CVM9534]
gi|388359886|gb|EIL24142.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CVM9570]
gi|388366236|gb|EIL29982.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CVM9574]
gi|388370988|gb|EIL34481.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CVM9545]
gi|388374577|gb|EIL37711.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM9942]
gi|388380854|gb|EIL43436.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM10026]
gi|388382752|gb|EIL44594.1| transcription termination factor Rho [Escherichia coli 541-15]
gi|388389348|gb|EIL50882.1| transcription termination factor Rho [Escherichia coli KD2]
gi|388391464|gb|EIL52931.1| transcription termination factor Rho [Escherichia coli KD1]
gi|388397619|gb|EIL58591.1| transcription termination factor Rho [Escherichia coli 576-1]
gi|388409172|gb|EIL69494.1| transcription termination factor Rho [Escherichia coli 541-1]
gi|388409985|gb|EIL70246.1| transcription termination factor Rho [Escherichia coli 75]
gi|388421283|gb|EIL80900.1| transcription termination factor Rho [Escherichia coli HM605]
gi|388422607|gb|EIL82181.1| transcription termination factor Rho [Escherichia coli CUMT8]
gi|390637245|gb|EIN16797.1| transcription termination factor Rho [Escherichia coli FRIK1996]
gi|390637563|gb|EIN17106.1| transcription termination factor Rho [Escherichia coli FDA505]
gi|390638568|gb|EIN18074.1| transcription termination factor Rho [Escherichia coli FDA517]
gi|390655846|gb|EIN33758.1| transcription termination factor Rho [Escherichia coli FRIK1985]
gi|390656622|gb|EIN34482.1| transcription termination factor Rho [Escherichia coli 93-001]
gi|390659563|gb|EIN37322.1| transcription termination factor Rho [Escherichia coli FRIK1990]
gi|390674006|gb|EIN50214.1| transcription termination factor Rho [Escherichia coli PA3]
gi|390677363|gb|EIN53415.1| transcription termination factor Rho [Escherichia coli PA5]
gi|390680810|gb|EIN56630.1| transcription termination factor Rho [Escherichia coli PA9]
gi|390692001|gb|EIN66717.1| transcription termination factor Rho [Escherichia coli PA10]
gi|390696226|gb|EIN70715.1| transcription termination factor Rho [Escherichia coli PA14]
gi|390697415|gb|EIN71835.1| transcription termination factor Rho [Escherichia coli PA15]
gi|390711235|gb|EIN84218.1| transcription termination factor Rho [Escherichia coli PA22]
gi|390717670|gb|EIN90448.1| transcription termination factor Rho [Escherichia coli PA24]
gi|390718169|gb|EIN90927.1| transcription termination factor Rho [Escherichia coli PA25]
gi|390724246|gb|EIN96806.1| transcription termination factor Rho [Escherichia coli PA28]
gi|390736940|gb|EIO08256.1| transcription termination factor Rho [Escherichia coli PA31]
gi|390737533|gb|EIO08821.1| transcription termination factor Rho [Escherichia coli PA32]
gi|390741152|gb|EIO12242.1| transcription termination factor Rho [Escherichia coli PA33]
gi|390755724|gb|EIO25255.1| transcription termination factor Rho [Escherichia coli PA40]
gi|390758562|gb|EIO27998.1| transcription termination factor Rho [Escherichia coli PA39]
gi|390762104|gb|EIO31372.1| transcription termination factor Rho [Escherichia coli PA41]
gi|390764878|gb|EIO34069.1| transcription termination factor Rho [Escherichia coli PA42]
gi|390779056|gb|EIO46793.1| transcription termination factor Rho [Escherichia coli TW06591]
gi|390786083|gb|EIO53611.1| transcription termination factor Rho [Escherichia coli TW07945]
gi|390796634|gb|EIO63905.1| transcription termination factor Rho [Escherichia coli TW10246]
gi|390800101|gb|EIO67211.1| transcription termination factor Rho [Escherichia coli TW09098]
gi|390803121|gb|EIO70145.1| transcription termination factor Rho [Escherichia coli TW11039]
gi|390804512|gb|EIO71478.1| transcription termination factor Rho [Escherichia coli TW09109]
gi|390813614|gb|EIO80224.1| transcription termination factor Rho [Escherichia coli TW10119]
gi|390822018|gb|EIO88163.1| transcription termination factor Rho [Escherichia coli TW09195]
gi|390822481|gb|EIO88597.1| transcription termination factor Rho [Escherichia coli EC4203]
gi|390827643|gb|EIO93396.1| transcription termination factor Rho [Escherichia coli EC4196]
gi|390840783|gb|EIP04783.1| transcription termination factor Rho [Escherichia coli TW14313]
gi|390842859|gb|EIP06692.1| transcription termination factor Rho [Escherichia coli TW14301]
gi|390847752|gb|EIP11276.1| transcription termination factor Rho [Escherichia coli EC4421]
gi|390858265|gb|EIP20669.1| transcription termination factor Rho [Escherichia coli EC4422]
gi|390862551|gb|EIP24730.1| transcription termination factor Rho [Escherichia coli EC4013]
gi|390866698|gb|EIP28640.1| transcription termination factor Rho [Escherichia coli EC4402]
gi|390874911|gb|EIP35995.1| transcription termination factor Rho [Escherichia coli EC4439]
gi|390880283|gb|EIP40972.1| transcription termination factor Rho [Escherichia coli EC4436]
gi|390890150|gb|EIP49832.1| transcription termination factor Rho [Escherichia coli EC4437]
gi|390891548|gb|EIP51171.1| transcription termination factor Rho [Escherichia coli EC4448]
gi|390897920|gb|EIP57220.1| transcription termination factor Rho [Escherichia coli EC1738]
gi|390905836|gb|EIP64761.1| transcription termination factor Rho [Escherichia coli EC1734]
gi|390915586|gb|EIP74095.1| transcription termination factor Rho [Escherichia coli EC1845]
gi|390915904|gb|EIP74401.1| transcription termination factor Rho [Escherichia coli EC1863]
gi|391244964|gb|EIQ04240.1| transcription termination factor Rho [Shigella flexneri 2850-71]
gi|391245161|gb|EIQ04435.1| transcription termination factor Rho [Shigella flexneri K-1770]
gi|391245556|gb|EIQ04823.1| transcription termination factor Rho [Shigella flexneri CCH060]
gi|391258324|gb|EIQ17428.1| transcription termination factor Rho [Shigella flexneri K-315]
gi|391262744|gb|EIQ21759.1| transcription termination factor Rho [Shigella flexneri K-404]
gi|391265550|gb|EIQ24518.1| transcription termination factor Rho [Shigella boydii 965-58]
gi|391273106|gb|EIQ31934.1| transcription termination factor Rho [Shigella boydii 4444-74]
gi|391277414|gb|EIQ36158.1| transcription termination factor Rho [Shigella sonnei 3226-85]
gi|391280583|gb|EIQ39250.1| transcription termination factor Rho [Shigella sonnei 3233-85]
gi|391291684|gb|EIQ50064.1| transcription termination factor Rho [Shigella sonnei 4822-66]
gi|391297975|gb|EIQ56000.1| transcription termination factor Rho [Shigella dysenteriae 225-75]
gi|391301536|gb|EIQ59422.1| transcription termination factor Rho [Escherichia coli EPECa12]
gi|391309996|gb|EIQ67659.1| transcription termination factor Rho [Escherichia coli EPEC
C342-62]
gi|394389887|gb|EJE66985.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CVM9602]
gi|394391206|gb|EJE68092.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM10224]
gi|394397299|gb|EJE73578.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CVM9634]
gi|394411659|gb|EJE85882.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM10021]
gi|394413996|gb|EJE87981.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CVM9553]
gi|394423723|gb|EJE96938.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CVM9455]
gi|394430798|gb|EJF03076.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM10030]
gi|394431736|gb|EJF03899.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CVM9952]
gi|397783001|gb|EJK93863.1| transcription termination factor Rho [Escherichia coli STEC_O31]
gi|397894407|gb|EJL10850.1| transcription termination factor Rho [Shigella flexneri 6603-63]
gi|397894995|gb|EJL11430.1| transcription termination factor Rho [Shigella sonnei str. Moseley]
gi|404290033|gb|EEH70713.2| transcription termination factor Rho [Escherichia sp. 1_1_43]
gi|404335386|gb|EJZ61856.1| transcription termination factor Rho [Shigella flexneri 1485-80]
gi|406780195|gb|AFS59619.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056784|gb|AFS76835.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
2011C-3493]
gi|407062823|gb|AFS83870.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408061378|gb|EKG95897.1| transcription termination factor Rho [Escherichia coli PA7]
gi|408063877|gb|EKG98364.1| transcription termination factor Rho [Escherichia coli FRIK920]
gi|408065471|gb|EKG99944.1| transcription termination factor Rho [Escherichia coli PA34]
gi|408075382|gb|EKH09615.1| transcription termination factor Rho [Escherichia coli FDA506]
gi|408080187|gb|EKH14271.1| transcription termination factor Rho [Escherichia coli FDA507]
gi|408088373|gb|EKH21745.1| transcription termination factor Rho [Escherichia coli FDA504]
gi|408094545|gb|EKH27562.1| transcription termination factor Rho [Escherichia coli FRIK1999]
gi|408100725|gb|EKH33207.1| transcription termination factor Rho [Escherichia coli FRIK1997]
gi|408105761|gb|EKH37904.1| transcription termination factor Rho [Escherichia coli NE1487]
gi|408112498|gb|EKH44144.1| transcription termination factor Rho [Escherichia coli NE037]
gi|408118836|gb|EKH49951.1| transcription termination factor Rho [Escherichia coli FRIK2001]
gi|408124956|gb|EKH55596.1| transcription termination factor Rho [Escherichia coli PA4]
gi|408134752|gb|EKH64568.1| transcription termination factor Rho [Escherichia coli PA23]
gi|408136964|gb|EKH66691.1| transcription termination factor Rho [Escherichia coli PA49]
gi|408143712|gb|EKH72986.1| transcription termination factor Rho [Escherichia coli PA45]
gi|408152092|gb|EKH80541.1| transcription termination factor Rho [Escherichia coli TT12B]
gi|408157227|gb|EKH85389.1| transcription termination factor Rho [Escherichia coli MA6]
gi|408161283|gb|EKH89249.1| transcription termination factor Rho [Escherichia coli 5905]
gi|408170397|gb|EKH97603.1| transcription termination factor Rho [Escherichia coli CB7326]
gi|408177323|gb|EKI04134.1| transcription termination factor Rho [Escherichia coli EC96038]
gi|408180324|gb|EKI06946.1| transcription termination factor Rho [Escherichia coli 5412]
gi|408189590|gb|EKI15301.1| transcription termination factor Rho [Escherichia coli TW15901]
gi|408197341|gb|EKI22604.1| transcription termination factor Rho [Escherichia coli ARS4.2123]
gi|408197779|gb|EKI23030.1| transcription termination factor Rho [Escherichia coli TW00353]
gi|408208882|gb|EKI33498.1| transcription termination factor Rho [Escherichia coli 3006]
gi|408210344|gb|EKI34909.1| transcription termination factor Rho [Escherichia coli 07798]
gi|408211369|gb|EKI35916.1| transcription termination factor Rho [Escherichia coli PA38]
gi|408223485|gb|EKI47254.1| transcription termination factor Rho [Escherichia coli EC1735]
gi|408224924|gb|EKI48621.1| transcription termination factor Rho [Escherichia coli N1]
gi|408235041|gb|EKI58028.1| transcription termination factor Rho [Escherichia coli EC1736]
gi|408237851|gb|EKI60695.1| transcription termination factor Rho [Escherichia coli EC1737]
gi|408242984|gb|EKI65532.1| transcription termination factor Rho [Escherichia coli EC1846]
gi|408251917|gb|EKI73627.1| transcription termination factor Rho [Escherichia coli EC1847]
gi|408256222|gb|EKI77609.1| transcription termination factor Rho [Escherichia coli EC1848]
gi|408262851|gb|EKI83760.1| transcription termination factor Rho [Escherichia coli EC1849]
gi|408271073|gb|EKI91222.1| transcription termination factor Rho [Escherichia coli EC1850]
gi|408274234|gb|EKI94256.1| transcription termination factor Rho [Escherichia coli EC1856]
gi|408282154|gb|EKJ01492.1| transcription termination factor Rho [Escherichia coli EC1862]
gi|408288578|gb|EKJ07398.1| transcription termination factor Rho [Escherichia coli EC1864]
gi|408293149|gb|EKJ11610.1| transcription termination factor Rho [Escherichia coli EC1865]
gi|408303617|gb|EKJ21074.1| transcription termination factor Rho [Escherichia coli EC1868]
gi|408304476|gb|EKJ21901.1| transcription termination factor Rho [Escherichia coli EC1866]
gi|408316080|gb|EKJ32376.1| transcription termination factor Rho [Escherichia coli EC1869]
gi|408321266|gb|EKJ37305.1| transcription termination factor Rho [Escherichia coli EC1870]
gi|408323135|gb|EKJ39099.1| transcription termination factor Rho [Escherichia coli NE098]
gi|408334045|gb|EKJ48950.1| transcription termination factor Rho [Escherichia coli FRIK523]
gi|408340458|gb|EKJ54950.1| transcription termination factor Rho [Escherichia coli 0.1288]
gi|408342203|gb|EKJ56636.1| transcription termination factor Rho [Escherichia coli 0.1304]
gi|408457447|gb|EKJ81243.1| transcription termination factor Rho [Escherichia coli AD30]
gi|408544867|gb|EKK22309.1| transcription termination factor Rho [Escherichia coli 5.2239]
gi|408545410|gb|EKK22843.1| transcription termination factor Rho [Escherichia coli 3.4870]
gi|408545986|gb|EKK23407.1| transcription termination factor Rho [Escherichia coli 6.0172]
gi|408563191|gb|EKK39331.1| transcription termination factor Rho [Escherichia coli 8.0566]
gi|408563772|gb|EKK39902.1| transcription termination factor Rho [Escherichia coli 8.0586]
gi|408564334|gb|EKK40444.1| transcription termination factor Rho [Escherichia coli 8.0569]
gi|408575714|gb|EKK51364.1| transcription termination factor Rho [Escherichia coli 10.0833]
gi|408578625|gb|EKK54139.1| transcription termination factor Rho [Escherichia coli 8.2524]
gi|408588380|gb|EKK62959.1| transcription termination factor Rho [Escherichia coli 10.0869]
gi|408593367|gb|EKK67683.1| transcription termination factor Rho [Escherichia coli 88.0221]
gi|408598960|gb|EKK72892.1| transcription termination factor Rho [Escherichia coli 8.0416]
gi|408608645|gb|EKK82031.1| transcription termination factor Rho [Escherichia coli 10.0821]
gi|412965162|emb|CCK49092.1| transcription termination factor Rho [Escherichia coli chi7122]
gi|412971747|emb|CCJ46412.1| transcription termination factor Rho; polarity suppressor
[Escherichia coli]
gi|421936960|gb|EKT94604.1| transcription termination factor Rho [Escherichia coli O111:H11
str. CFSAN001630]
gi|421945928|gb|EKU03098.1| transcription termination factor Rho [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421948367|gb|EKU05387.1| transcription termination factor Rho [Escherichia coli O26:H11 str.
CFSAN001629]
gi|427201366|gb|EKV71756.1| transcription termination factor Rho [Escherichia coli 88.1042]
gi|427201603|gb|EKV71982.1| transcription termination factor Rho [Escherichia coli 89.0511]
gi|427204796|gb|EKV75064.1| transcription termination factor Rho [Escherichia coli 88.1467]
gi|427217635|gb|EKV86689.1| transcription termination factor Rho [Escherichia coli 90.0091]
gi|427221342|gb|EKV90199.1| transcription termination factor Rho [Escherichia coli 90.2281]
gi|427224277|gb|EKV92990.1| transcription termination factor Rho [Escherichia coli 90.0039]
gi|427238073|gb|EKW05594.1| transcription termination factor Rho [Escherichia coli 93.0056]
gi|427238152|gb|EKW05671.1| transcription termination factor Rho [Escherichia coli 93.0055]
gi|427242696|gb|EKW10098.1| transcription termination factor Rho [Escherichia coli 94.0618]
gi|427255763|gb|EKW22004.1| transcription termination factor Rho [Escherichia coli 95.0183]
gi|427257514|gb|EKW23636.1| transcription termination factor Rho [Escherichia coli 95.0943]
gi|427258183|gb|EKW24283.1| transcription termination factor Rho [Escherichia coli 95.1288]
gi|427273122|gb|EKW37816.1| transcription termination factor Rho [Escherichia coli 96.0428]
gi|427275031|gb|EKW39662.1| transcription termination factor Rho [Escherichia coli 96.0427]
gi|427280485|gb|EKW44843.1| transcription termination factor Rho [Escherichia coli 96.0939]
gi|427289086|gb|EKW52676.1| transcription termination factor Rho [Escherichia coli 96.0932]
gi|427295859|gb|EKW58937.1| transcription termination factor Rho [Escherichia coli 96.0107]
gi|427297684|gb|EKW60711.1| transcription termination factor Rho [Escherichia coli 97.0003]
gi|427307943|gb|EKW70363.1| transcription termination factor Rho [Escherichia coli 97.1742]
gi|427310835|gb|EKW73063.1| transcription termination factor Rho [Escherichia coli 97.0007]
gi|427315608|gb|EKW77598.1| transcription termination factor Rho [Escherichia coli 99.0672]
gi|427325060|gb|EKW86511.1| transcription termination factor Rho [Escherichia coli 99.0678]
gi|427326471|gb|EKW87885.1| transcription termination factor Rho [Escherichia coli 99.0713]
gi|429250787|gb|EKY35431.1| transcription termination factor Rho [Escherichia coli 96.0109]
gi|429251272|gb|EKY35882.1| transcription termination factor Rho [Escherichia coli 97.0010]
gi|429355524|gb|EKY92212.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02030]
gi|429355714|gb|EKY92399.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357094|gb|EKY93768.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02092]
gi|429371158|gb|EKZ07717.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02093]
gi|429371362|gb|EKZ07919.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02281]
gi|429375392|gb|EKZ11927.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02318]
gi|429387188|gb|EKZ23630.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-02913]
gi|429389750|gb|EKZ26169.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-03439]
gi|429390456|gb|EKZ26868.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-03943]
gi|429400890|gb|EKZ37201.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
11-04080]
gi|429401857|gb|EKZ38151.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429404432|gb|EKZ40707.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412663|gb|EKZ48854.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429415604|gb|EKZ51765.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422923|gb|EKZ59032.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427470|gb|EKZ63552.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429431775|gb|EKZ67818.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429439280|gb|EKZ75267.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429443647|gb|EKZ79597.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429448272|gb|EKZ84187.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429454036|gb|EKZ89901.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458499|gb|EKZ94323.1| transcription termination factor Rho [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430872033|gb|ELB95652.1| transcription termination factor Rho [Escherichia coli KTE2]
gi|430873049|gb|ELB96628.1| transcription termination factor Rho [Escherichia coli KTE4]
gi|430882995|gb|ELC06002.1| transcription termination factor Rho [Escherichia coli KTE5]
gi|430890801|gb|ELC13361.1| transcription termination factor Rho [Escherichia coli KTE10]
gi|430895527|gb|ELC17789.1| transcription termination factor Rho [Escherichia coli KTE12]
gi|430902964|gb|ELC24709.1| transcription termination factor Rho [Escherichia coli KTE16]
gi|430903068|gb|ELC24812.1| transcription termination factor Rho [Escherichia coli KTE15]
gi|430912896|gb|ELC34068.1| transcription termination factor Rho [Escherichia coli KTE25]
gi|430913848|gb|ELC34967.1| transcription termination factor Rho [Escherichia coli KTE21]
gi|430922505|gb|ELC43257.1| transcription termination factor Rho [Escherichia coli KTE26]
gi|430925899|gb|ELC46495.1| transcription termination factor Rho [Escherichia coli KTE28]
gi|430932498|gb|ELC52919.1| transcription termination factor Rho [Escherichia coli KTE39]
gi|430935868|gb|ELC56163.1| transcription termination factor Rho [Escherichia coli KTE44]
gi|430941411|gb|ELC61558.1| transcription termination factor Rho [Escherichia coli KTE178]
gi|430950077|gb|ELC69467.1| transcription termination factor Rho [Escherichia coli KTE187]
gi|430950279|gb|ELC69665.1| transcription termination factor Rho [Escherichia coli KTE181]
gi|430959620|gb|ELC77931.1| transcription termination factor Rho [Escherichia coli KTE188]
gi|430962736|gb|ELC80588.1| transcription termination factor Rho [Escherichia coli KTE189]
gi|430970844|gb|ELC87889.1| transcription termination factor Rho [Escherichia coli KTE191]
gi|430977195|gb|ELC94046.1| transcription termination factor Rho [Escherichia coli KTE193]
gi|430978946|gb|ELC95735.1| transcription termination factor Rho [Escherichia coli KTE201]
gi|430985103|gb|ELD01710.1| transcription termination factor Rho [Escherichia coli KTE204]
gi|430990476|gb|ELD06906.1| transcription termination factor Rho [Escherichia coli KTE205]
gi|430995303|gb|ELD11600.1| transcription termination factor Rho [Escherichia coli KTE206]
gi|431001658|gb|ELD17234.1| transcription termination factor Rho [Escherichia coli KTE208]
gi|431003504|gb|ELD18987.1| transcription termination factor Rho [Escherichia coli KTE210]
gi|431013374|gb|ELD27107.1| transcription termination factor Rho [Escherichia coli KTE212]
gi|431016970|gb|ELD30487.1| transcription termination factor Rho [Escherichia coli KTE213]
gi|431025663|gb|ELD38761.1| transcription termination factor Rho [Escherichia coli KTE216]
gi|431030660|gb|ELD43666.1| transcription termination factor Rho [Escherichia coli KTE214]
gi|431034571|gb|ELD46497.1| transcription termination factor Rho [Escherichia coli KTE220]
gi|431037882|gb|ELD48852.1| transcription termination factor Rho [Escherichia coli KTE224]
gi|431047317|gb|ELD57318.1| transcription termination factor Rho [Escherichia coli KTE230]
gi|431047420|gb|ELD57420.1| transcription termination factor Rho [Escherichia coli KTE228]
gi|431059758|gb|ELD69105.1| transcription termination factor Rho [Escherichia coli KTE233]
gi|431066660|gb|ELD75284.1| transcription termination factor Rho [Escherichia coli KTE235]
gi|431066899|gb|ELD75517.1| transcription termination factor Rho [Escherichia coli KTE234]
gi|431070512|gb|ELD78815.1| transcription termination factor Rho [Escherichia coli KTE236]
gi|431075951|gb|ELD83467.1| transcription termination factor Rho [Escherichia coli KTE237]
gi|431080797|gb|ELD87587.1| transcription termination factor Rho [Escherichia coli KTE47]
gi|431088247|gb|ELD94143.1| transcription termination factor Rho [Escherichia coli KTE49]
gi|431089422|gb|ELD95236.1| transcription termination factor Rho [Escherichia coli KTE51]
gi|431096838|gb|ELE02293.1| transcription termination factor Rho [Escherichia coli KTE53]
gi|431104166|gb|ELE08769.1| transcription termination factor Rho [Escherichia coli KTE55]
gi|431111478|gb|ELE15377.1| transcription termination factor Rho [Escherichia coli KTE56]
gi|431114297|gb|ELE17841.1| transcription termination factor Rho [Escherichia coli KTE57]
gi|431117344|gb|ELE20583.1| transcription termination factor Rho [Escherichia coli KTE58]
gi|431125497|gb|ELE27899.1| transcription termination factor Rho [Escherichia coli KTE60]
gi|431127267|gb|ELE29569.1| transcription termination factor Rho [Escherichia coli KTE62]
gi|431136553|gb|ELE38411.1| transcription termination factor Rho [Escherichia coli KTE66]
gi|431144243|gb|ELE45950.1| transcription termination factor Rho [Escherichia coli KTE67]
gi|431146023|gb|ELE47622.1| transcription termination factor Rho [Escherichia coli KTE72]
gi|431150612|gb|ELE51662.1| transcription termination factor Rho [Escherichia coli KTE75]
gi|431155685|gb|ELE56431.1| transcription termination factor Rho [Escherichia coli KTE76]
gi|431160098|gb|ELE60616.1| transcription termination factor Rho [Escherichia coli KTE77]
gi|431166904|gb|ELE67207.1| transcription termination factor Rho [Escherichia coli KTE80]
gi|431175831|gb|ELE75818.1| transcription termination factor Rho [Escherichia coli KTE81]
gi|431176968|gb|ELE76908.1| transcription termination factor Rho [Escherichia coli KTE83]
gi|431177464|gb|ELE77388.1| transcription termination factor Rho [Escherichia coli KTE86]
gi|431186555|gb|ELE86095.1| transcription termination factor Rho [Escherichia coli KTE87]
gi|431188130|gb|ELE87629.1| transcription termination factor Rho [Escherichia coli KTE93]
gi|431196474|gb|ELE95400.1| transcription termination factor Rho [Escherichia coli KTE111]
gi|431197000|gb|ELE95867.1| transcription termination factor Rho [Escherichia coli KTE116]
gi|431207168|gb|ELF05438.1| transcription termination factor Rho [Escherichia coli KTE119]
gi|431209644|gb|ELF07715.1| transcription termination factor Rho [Escherichia coli KTE142]
gi|431216839|gb|ELF14431.1| transcription termination factor Rho [Escherichia coli KTE143]
gi|431218863|gb|ELF16288.1| transcription termination factor Rho [Escherichia coli KTE156]
gi|431230649|gb|ELF26424.1| transcription termination factor Rho [Escherichia coli KTE162]
gi|431234360|gb|ELF29761.1| transcription termination factor Rho [Escherichia coli KTE161]
gi|431239677|gb|ELF34149.1| transcription termination factor Rho [Escherichia coli KTE169]
gi|431239840|gb|ELF34306.1| transcription termination factor Rho [Escherichia coli KTE171]
gi|431251045|gb|ELF45063.1| transcription termination factor Rho [Escherichia coli KTE8]
gi|431254622|gb|ELF47890.1| transcription termination factor Rho [Escherichia coli KTE6]
gi|431262471|gb|ELF54461.1| transcription termination factor Rho [Escherichia coli KTE17]
gi|431269824|gb|ELF61125.1| transcription termination factor Rho [Escherichia coli KTE9]
gi|431270525|gb|ELF61688.1| transcription termination factor Rho [Escherichia coli KTE45]
gi|431270631|gb|ELF61793.1| transcription termination factor Rho [Escherichia coli KTE18]
gi|431278956|gb|ELF69927.1| transcription termination factor Rho [Escherichia coli KTE42]
gi|431280841|gb|ELF71750.1| transcription termination factor Rho [Escherichia coli KTE23]
gi|431289657|gb|ELF80398.1| transcription termination factor Rho [Escherichia coli KTE43]
gi|431293168|gb|ELF83548.1| transcription termination factor Rho [Escherichia coli KTE29]
gi|431299628|gb|ELF89199.1| transcription termination factor Rho [Escherichia coli KTE22]
gi|431305299|gb|ELF93628.1| transcription termination factor Rho [Escherichia coli KTE46]
gi|431315265|gb|ELG03188.1| transcription termination factor Rho [Escherichia coli KTE48]
gi|431321424|gb|ELG09025.1| transcription termination factor Rho [Escherichia coli KTE50]
gi|431323446|gb|ELG10944.1| transcription termination factor Rho [Escherichia coli KTE54]
gi|431323795|gb|ELG11261.1| transcription termination factor Rho [Escherichia coli KTE59]
gi|431325676|gb|ELG13057.1| transcription termination factor Rho [Escherichia coli KTE63]
gi|431334978|gb|ELG22122.1| transcription termination factor Rho [Escherichia coli KTE65]
gi|431335451|gb|ELG22589.1| transcription termination factor Rho [Escherichia coli KTE78]
gi|431345109|gb|ELG32036.1| transcription termination factor Rho [Escherichia coli KTE84]
gi|431347726|gb|ELG34604.1| transcription termination factor Rho [Escherichia coli KTE79]
gi|431352513|gb|ELG39282.1| transcription termination factor Rho [Escherichia coli KTE91]
gi|431359608|gb|ELG46241.1| transcription termination factor Rho [Escherichia coli KTE101]
gi|431359990|gb|ELG46611.1| transcription termination factor Rho [Escherichia coli KTE115]
gi|431373394|gb|ELG59000.1| transcription termination factor Rho [Escherichia coli KTE118]
gi|431377647|gb|ELG62773.1| transcription termination factor Rho [Escherichia coli KTE123]
gi|431381138|gb|ELG65770.1| transcription termination factor Rho [Escherichia coli KTE136]
gi|431382030|gb|ELG66375.1| transcription termination factor Rho [Escherichia coli KTE135]
gi|431384911|gb|ELG68901.1| transcription termination factor Rho [Escherichia coli KTE140]
gi|431392046|gb|ELG75649.1| transcription termination factor Rho [Escherichia coli KTE141]
gi|431397075|gb|ELG80536.1| transcription termination factor Rho [Escherichia coli KTE144]
gi|431400786|gb|ELG84150.1| transcription termination factor Rho [Escherichia coli KTE146]
gi|431407639|gb|ELG90848.1| transcription termination factor Rho [Escherichia coli KTE147]
gi|431413178|gb|ELG95972.1| transcription termination factor Rho [Escherichia coli KTE158]
gi|431417391|gb|ELG99854.1| transcription termination factor Rho [Escherichia coli KTE154]
gi|431422019|gb|ELH04214.1| transcription termination factor Rho [Escherichia coli KTE192]
gi|431427101|gb|ELH09144.1| transcription termination factor Rho [Escherichia coli KTE194]
gi|431429785|gb|ELH11620.1| transcription termination factor Rho [Escherichia coli KTE165]
gi|431434467|gb|ELH16116.1| transcription termination factor Rho [Escherichia coli KTE173]
gi|431435056|gb|ELH16669.1| transcription termination factor Rho [Escherichia coli KTE190]
gi|431439891|gb|ELH21222.1| transcription termination factor Rho [Escherichia coli KTE175]
gi|431459320|gb|ELH39633.1| transcription termination factor Rho [Escherichia coli KTE184]
gi|431459652|gb|ELH39944.1| transcription termination factor Rho [Escherichia coli KTE183]
gi|431466697|gb|ELH46714.1| transcription termination factor Rho [Escherichia coli KTE196]
gi|431467308|gb|ELH47318.1| transcription termination factor Rho [Escherichia coli KTE202]
gi|431476518|gb|ELH56309.1| transcription termination factor Rho [Escherichia coli KTE203]
gi|431477510|gb|ELH57278.1| transcription termination factor Rho [Escherichia coli KTE197]
gi|431478360|gb|ELH58108.1| transcription termination factor Rho [Escherichia coli KTE207]
gi|431485142|gb|ELH64806.1| transcription termination factor Rho [Escherichia coli KTE209]
gi|431487941|gb|ELH67582.1| transcription termination factor Rho [Escherichia coli KTE211]
gi|431493802|gb|ELH73394.1| transcription termination factor Rho [Escherichia coli KTE215]
gi|431501758|gb|ELH80734.1| transcription termination factor Rho [Escherichia coli KTE218]
gi|431501994|gb|ELH80887.1| transcription termination factor Rho [Escherichia coli KTE217]
gi|431504434|gb|ELH83060.1| transcription termination factor Rho [Escherichia coli KTE223]
gi|431520828|gb|ELH98147.1| transcription termination factor Rho [Escherichia coli KTE229]
gi|431521724|gb|ELH98963.1| transcription termination factor Rho [Escherichia coli KTE227]
gi|431526189|gb|ELI02948.1| transcription termination factor Rho [Escherichia coli KTE104]
gi|431526478|gb|ELI03227.1| transcription termination factor Rho [Escherichia coli KTE105]
gi|431530130|gb|ELI06815.1| transcription termination factor Rho [Escherichia coli KTE106]
gi|431540052|gb|ELI15683.1| transcription termination factor Rho [Escherichia coli KTE109]
gi|431545812|gb|ELI20457.1| transcription termination factor Rho [Escherichia coli KTE112]
gi|431547992|gb|ELI22282.1| transcription termination factor Rho [Escherichia coli KTE113]
gi|431551952|gb|ELI25915.1| transcription termination factor Rho [Escherichia coli KTE117]
gi|431561763|gb|ELI35125.1| transcription termination factor Rho [Escherichia coli KTE120]
gi|431565315|gb|ELI38450.1| transcription termination factor Rho [Escherichia coli KTE122]
gi|431565555|gb|ELI38634.1| transcription termination factor Rho [Escherichia coli KTE124]
gi|431577827|gb|ELI50450.1| transcription termination factor Rho [Escherichia coli KTE125]
gi|431578339|gb|ELI50946.1| transcription termination factor Rho [Escherichia coli KTE128]
gi|431582766|gb|ELI54777.1| transcription termination factor Rho [Escherichia coli KTE129]
gi|431592961|gb|ELI63526.1| transcription termination factor Rho [Escherichia coli KTE131]
gi|431597296|gb|ELI67203.1| transcription termination factor Rho [Escherichia coli KTE133]
gi|431600457|gb|ELI70127.1| transcription termination factor Rho [Escherichia coli KTE137]
gi|431606653|gb|ELI76027.1| transcription termination factor Rho [Escherichia coli KTE138]
gi|431612041|gb|ELI81296.1| transcription termination factor Rho [Escherichia coli KTE139]
gi|431615712|gb|ELI84834.1| transcription termination factor Rho [Escherichia coli KTE145]
gi|431623610|gb|ELI92241.1| transcription termination factor Rho [Escherichia coli KTE148]
gi|431624551|gb|ELI93167.1| transcription termination factor Rho [Escherichia coli KTE150]
gi|431630314|gb|ELI98651.1| transcription termination factor Rho [Escherichia coli KTE153]
gi|431638368|gb|ELJ06403.1| transcription termination factor Rho [Escherichia coli KTE157]
gi|431639976|gb|ELJ07742.1| transcription termination factor Rho [Escherichia coli KTE160]
gi|431642071|gb|ELJ09796.1| transcription termination factor Rho [Escherichia coli KTE163]
gi|431652971|gb|ELJ20088.1| transcription termination factor Rho [Escherichia coli KTE166]
gi|431655344|gb|ELJ22377.1| transcription termination factor Rho [Escherichia coli KTE167]
gi|431657060|gb|ELJ24028.1| transcription termination factor Rho [Escherichia coli KTE168]
gi|431666954|gb|ELJ33576.1| transcription termination factor Rho [Escherichia coli KTE174]
gi|431669812|gb|ELJ36178.1| transcription termination factor Rho [Escherichia coli KTE176]
gi|431673040|gb|ELJ39271.1| transcription termination factor Rho [Escherichia coli KTE177]
gi|431683083|gb|ELJ48722.1| transcription termination factor Rho [Escherichia coli KTE179]
gi|431683697|gb|ELJ49325.1| transcription termination factor Rho [Escherichia coli KTE180]
gi|431687631|gb|ELJ53175.1| transcription termination factor Rho [Escherichia coli KTE232]
gi|431697619|gb|ELJ62721.1| transcription termination factor Rho [Escherichia coli KTE82]
gi|431701546|gb|ELJ66461.1| transcription termination factor Rho [Escherichia coli KTE88]
gi|431701750|gb|ELJ66663.1| transcription termination factor Rho [Escherichia coli KTE85]
gi|431712966|gb|ELJ77230.1| transcription termination factor Rho [Escherichia coli KTE90]
gi|431715634|gb|ELJ79780.1| transcription termination factor Rho [Escherichia coli KTE95]
gi|431716595|gb|ELJ80702.1| transcription termination factor Rho [Escherichia coli KTE94]
gi|431727985|gb|ELJ91712.1| transcription termination factor Rho [Escherichia coli KTE97]
gi|431731371|gb|ELJ94874.1| transcription termination factor Rho [Escherichia coli KTE99]
gi|432346366|gb|ELL40850.1| transcription termination factor Rho [Escherichia coli J96]
gi|441608547|emb|CCP95631.1| Transcription termination factor Rho [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|441654674|emb|CCQ00640.1| Transcription termination factor Rho [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|441715832|emb|CCQ04275.1| Transcription termination factor Rho [Escherichia coli Nissle 1917]
gi|443424364|gb|AGC89268.1| transcription termination factor Rho [Escherichia coli APEC O78]
gi|444534951|gb|ELV15116.1| transcription termination factor Rho [Escherichia coli 99.0814]
gi|444536505|gb|ELV16517.1| transcription termination factor Rho [Escherichia coli 09BKT078844]
gi|444545259|gb|ELV24186.1| transcription termination factor Rho [Escherichia coli 99.0815]
gi|444554398|gb|ELV31962.1| transcription termination factor Rho [Escherichia coli 99.0816]
gi|444554613|gb|ELV32170.1| transcription termination factor Rho [Escherichia coli 99.0839]
gi|444559286|gb|ELV36520.1| transcription termination factor Rho [Escherichia coli 99.0848]
gi|444568944|gb|ELV45587.1| transcription termination factor Rho [Escherichia coli 99.1753]
gi|444572260|gb|ELV48699.1| transcription termination factor Rho [Escherichia coli 99.1775]
gi|444575894|gb|ELV52115.1| transcription termination factor Rho [Escherichia coli 99.1793]
gi|444588076|gb|ELV63470.1| transcription termination factor Rho [Escherichia coli 99.1805]
gi|444589244|gb|ELV64586.1| transcription termination factor Rho [Escherichia coli ATCC 700728]
gi|444589422|gb|ELV64757.1| transcription termination factor Rho [Escherichia coli PA11]
gi|444603234|gb|ELV77944.1| transcription termination factor Rho [Escherichia coli PA13]
gi|444603437|gb|ELV78140.1| transcription termination factor Rho [Escherichia coli PA19]
gi|444612423|gb|ELV86716.1| transcription termination factor Rho [Escherichia coli PA2]
gi|444619123|gb|ELV93179.1| transcription termination factor Rho [Escherichia coli PA47]
gi|444620371|gb|ELV94377.1| transcription termination factor Rho [Escherichia coli PA48]
gi|444626956|gb|ELW00743.1| transcription termination factor Rho [Escherichia coli PA8]
gi|444635214|gb|ELW08646.1| transcription termination factor Rho [Escherichia coli 7.1982]
gi|444637063|gb|ELW10439.1| transcription termination factor Rho [Escherichia coli 99.1781]
gi|444642140|gb|ELW15344.1| transcription termination factor Rho [Escherichia coli 99.1762]
gi|444651692|gb|ELW24488.1| transcription termination factor Rho [Escherichia coli PA35]
gi|444656969|gb|ELW29471.1| transcription termination factor Rho [Escherichia coli 3.4880]
gi|444659806|gb|ELW32200.1| transcription termination factor Rho [Escherichia coli 95.0083]
gi|444666870|gb|ELW38925.1| transcription termination factor Rho [Escherichia coli 99.0670]
gi|449313641|gb|EMD03842.1| transcription termination factor Rho [Escherichia coli O08]
gi|449314164|gb|EMD04338.1| transcription termination factor Rho [Escherichia coli S17]
gi|449316154|gb|EMD06275.1| transcription termination factor Rho [Escherichia coli SEPT362]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|419952435|ref|ZP_14468582.1| transcription termination factor Rho [Pseudomonas stutzeri TS44]
gi|387970480|gb|EIK54758.1| transcription termination factor Rho [Pseudomonas stutzeri TS44]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINYDRPENAKNKILFENLTPLFPNQRLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGN+E+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+NKSGTRREELL +D+LQ++W+LRKLL+ +
Sbjct: 344 QLDRRIAEKRVFPAININKSGTRREELLTSEDELQRMWILRKLLHPM 390
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKGGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSINYDRPENAKNKIL 132
>gi|197334080|ref|YP_002154827.1| transcription termination factor Rho [Vibrio fischeri MJ11]
gi|423684795|ref|ZP_17659603.1| transcription termination factor Rho [Vibrio fischeri SR5]
gi|197315570|gb|ACH65017.1| transcription termination factor Rho [Vibrio fischeri MJ11]
gi|371495842|gb|EHN71436.1| transcription termination factor Rho [Vibrio fischeri SR5]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH L +ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNAVNHDRPDNARNKILFENLTPLHANDRLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKADELQKMWILRKIVHPM 390
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/302 (47%), Positives = 179/302 (59%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A +T+ LE ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNRPVSDLVALGETLGLE--NLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--- 488
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNAVNHDR 123
Query: 489 ----------------------------------------VASP-------------KSG 495
+ASP K+G
Sbjct: 124 PDNARNKILFENLTPLHANDRLRMERGNGSTEDITARVLDLASPIGRGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 184 KTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|333898688|ref|YP_004472561.1| transcription termination factor Rho [Pseudomonas fulva 12-X]
gi|333113953|gb|AEF20467.1| transcription termination factor Rho [Pseudomonas fulva 12-X]
Length = 419
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E+ITGR+ID
Sbjct: 104 PKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNQRLTMEAGNGSTEDITGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N++GTRREELL +D+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRAGTRREELLTAEDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKGGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>gi|325913811|ref|ZP_08176170.1| transcription termination factor Rho [Xanthomonas vesicatoria ATCC
35937]
gi|325539886|gb|EGD11523.1| transcription termination factor Rho [Xanthomonas vesicatoria ATCC
35937]
Length = 620
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 245 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 304
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 305 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 364
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 365 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 424
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 425 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 484
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 485 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 544
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 545 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 592
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 228 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 287
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 288 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 347
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 348 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 407
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 408 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 467
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 468 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 507
>gi|253690372|ref|YP_003019562.1| transcription termination factor Rho [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251756950|gb|ACT15026.1| transcription termination factor Rho [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 450
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 75 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 134
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 135 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 194
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 195 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 254
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 255 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 314
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 315 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 374
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 375 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 421
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 208 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 267
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 268 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 327
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 328 PKRFFGAAR 336
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 96/137 (70%), Gaps = 4/137 (2%)
Query: 366 PVEKNL--LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSL 423
P NL LK+ + ++A + + LE + R+RKQ+++FAI K+ K GE IFGDG L
Sbjct: 29 PTTMNLTELKNTPVSELIALGENMGLENQA--RMRKQDIIFAILKQHAKSGEDIFGDGVL 86
Query: 424 EVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLK 483
E+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK
Sbjct: 87 EILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLK 146
Query: 484 IKKVNVASPKSGKSIIL 500
+ +VN P++ ++ IL
Sbjct: 147 VNEVNYDKPENARNKIL 163
>gi|262273617|ref|ZP_06051431.1| transcription termination factor Rho [Grimontia hollisae CIP
101886]
gi|262222595|gb|EEY73906.1| transcription termination factor Rho [Grimontia hollisae CIP
101886]
Length = 421
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 305/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG+G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGNGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNHDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ +SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDFTRSGTRREELLTKPDELQKMWILRKIVHPM 390
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 180/302 (59%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A +++ LE ++ RLRKQ+++FAI K+ K GE IFG+G LE+L DGFG
Sbjct: 6 LKNQAVSELVALGESMGLE--NLARLRKQDIIFAILKQHAKSGEDIFGNGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--- 488
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVNEVNHDK 123
Query: 489 ----------------------------------------VASP-------------KSG 495
+ASP K+G
Sbjct: 124 PDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 184 KTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|330831667|ref|YP_004394619.1| transcription termination factor Rho [Aeromonas veronii B565]
gi|328806803|gb|AEB52002.1| transcription termination factor Rho [Aeromonas veronii B565]
Length = 411
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 33 AKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 92
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE S+N+ LF+NLTPLH + L +ER S E+IT R++
Sbjct: 93 PPKEGERYFALLKVNEVNYDRPENSRNKILFENLTPLHANERLRMERGNGSTEDITARVL 152
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR
Sbjct: 153 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRM 212
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 213 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 272
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 273 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 332
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRVYPAI++ +SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 333 LHLSRKIAEKRVYPAIDITRSGTRKEELLTSGDELQKMWILRKIVHPM 380
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 167 VAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPA 226
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 227 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 286
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 287 PKRFFGAAR 295
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R K++++FAI K K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 13 LENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVS 72
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 73 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDRPENSRNKIL 122
>gi|117621426|ref|YP_854624.1| transcription termination factor Rho [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|411011385|ref|ZP_11387714.1| transcription termination factor Rho [Aeromonas aquariorum AAK1]
gi|423198986|ref|ZP_17185569.1| transcription termination factor Rho [Aeromonas hydrophila SSU]
gi|117562833|gb|ABK39781.1| transcription termination factor Rho [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|404629645|gb|EKB26388.1| transcription termination factor Rho [Aeromonas hydrophila SSU]
Length = 421
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN ++PE S+N+ LF+NLTPLH + L +ER S E+IT R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDRPENSRNKILFENLTPLHANERLRMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRVYPAI++ +SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVYPAIDITRSGTRKEELLTTGDELQKMWILRKIVHPM 390
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R K++++FAI K K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDRPENSRNKIL 132
>gi|397685648|ref|YP_006522967.1| transcription termination factor Rho [Pseudomonas stutzeri DSM
10701]
gi|452748495|ref|ZP_21948274.1| transcription termination factor Rho [Pseudomonas stutzeri NF13]
gi|395807204|gb|AFN76609.1| transcription termination factor Rho [Pseudomonas stutzeri DSM
10701]
gi|452007669|gb|EMD99922.1| transcription termination factor Rho [Pseudomonas stutzeri NF13]
Length = 419
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINYDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LTAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGN+E+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL +D+LQ+IW+LRKLL+ +
Sbjct: 344 QLDRRIAEKRVFPAININRSGTRREELLTAEDELQRIWILRKLLHPM 390
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 86/122 (70%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L +AE ID ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS S
Sbjct: 15 LEMAEQMGID----NMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADS 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLRTGDSIVGKIRPPKEGERYFALLKVDSINYDRPENAKNK 130
Query: 499 IL 500
IL
Sbjct: 131 IL 132
>gi|444376978|ref|ZP_21176216.1| Transcription termination factor Rho [Enterovibrio sp. AK16]
gi|443679103|gb|ELT85765.1| Transcription termination factor Rho [Enterovibrio sp. AK16]
Length = 421
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 305/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG+G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGNGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNHDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ +SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDFTRSGTRREELLTKPDELQKMWILRKIVHPM 390
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 180/302 (59%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A +++ LE ++ RLRKQ+++FAI K+ K GE IFG+G LE+L DGFG
Sbjct: 6 LKNQAVSELVALGESMGLE--NLARLRKQDIIFAILKQHAKSGEDIFGNGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--- 488
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVNEVNHDK 123
Query: 489 ----------------------------------------VASP-------------KSG 495
+ASP K+G
Sbjct: 124 PDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 184 KTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|410622675|ref|ZP_11333505.1| transcription termination factor Rho [Glaciecola pallidula DSM
14239 = ACAM 615]
gi|410157803|dbj|GAC28879.1| transcription termination factor Rho [Glaciecola pallidula DSM
14239 = ACAM 615]
Length = 421
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/397 (66%), Positives = 320/397 (80%), Gaps = 19/397 (4%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGGGVLEILQDGFGFLRSGDCSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI++VN +KPE S+N+ LF+NLTPLH + LER S E+IT RI+
Sbjct: 103 PPKDSERYFALLKIREVNFDKPENSRNKILFENLTPLHANERFRLERGNGSTEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I N+ EA ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANYPEAQLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDS+TRLARAYNTVIP+SG
Sbjct: 223 VQGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSLTRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL R++AEKRV+PAI+LN+SGTRREELL D+LQK+W+LRK+++ M+ F I
Sbjct: 343 LHLNRKIAEKRVFPAIDLNRSGTRREELLTSQDELQKMWILRKIVHE--MSEIDAIEFLI 400
Query: 362 KRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLR 398
R LA T+T D +S+KRL+
Sbjct: 401 GR-----------------LAMTKTNDEFFDSMKRLK 420
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 148/304 (48%), Gaps = 89/304 (29%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIF------------- 418
LKD + +++ ++ + LE ++ R RKQ+++F+I K K GE IF
Sbjct: 6 LKDKPISELVSLSEEMGLE--NLARARKQDIIFSILKSHAKGGEDIFGGGVLEILQDGFG 63
Query: 419 ----GDGSLEVLPDGFGFLRSQGSNYMASSDDI-------------YLSPSQIRRFNL-- 459
GD S PD SQ + + D Y + +IR N
Sbjct: 64 FLRSGDCSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVNFDK 123
Query: 460 ----HTGILWKGEIRVPKNGERYFALLK----------------------IKKVNVASPK 493
IL+ E P + F L + + + VA PK
Sbjct: 124 PENSRNKILF--ENLTPLHANERFRLERGNGSTEDITARILDLASPIGRGQRGLIVAPPK 181
Query: 494 SGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----- 548
+GK+++LQ+IA +I N+ EA ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 182 AGKTLLLQNIAQSIAANYPEAQLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPASRHVQ 241
Query: 549 ----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFF 586
L + +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFF
Sbjct: 242 VAEMVIEKAKRLVEHKKDVVILLDSLTRLARAYNTVIPSSGKVLTGGVDANALHKPKRFF 301
Query: 587 GAAR 590
GAAR
Sbjct: 302 GAAR 305
>gi|423204719|ref|ZP_17191275.1| transcription termination factor Rho [Aeromonas veronii AMC34]
gi|404625816|gb|EKB22629.1| transcription termination factor Rho [Aeromonas veronii AMC34]
Length = 421
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN ++PE S+N+ LF+NLTPLH + L +ER S E+IT R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDRPENSRNKILFENLTPLHANERLRMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRVYPAI++ +SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVYPAIDITRSGTRKEELLTTGDELQKMWILRKIVHPM 390
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R K++++FAI K K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDRPENSRNKIL 132
>gi|163803184|ref|ZP_02197066.1| transcription termination factor Rho [Vibrio sp. AND4]
gi|159173005|gb|EDP57839.1| transcription termination factor Rho [Vibrio sp. AND4]
Length = 419
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 306/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHPDCELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL ++++LQK+W+LRK+++ +
Sbjct: 343 IHLNRKIAEKRVFPAIDFNRSGTRREELLTKNEELQKMWILRKIVHPM 390
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/285 (48%), Positives = 168/285 (58%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVNDDKPDNARNKILFENLTPLH 140
Query: 489 -----------------------VASP-------------KSGKSIILQHIAHAITTNHS 512
+ASP K+GK+++LQ+IA +I NH
Sbjct: 141 ANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAHNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 201 DCELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 261 VILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|119389950|pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
gi|119389951|pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 65 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 124
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 125 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 184
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 185 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 244
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 245 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 304
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 305 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 364
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 365 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 412
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 199 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 258
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 259 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 318
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 319 PKRFFGAAR 327
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 42 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 101
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 102 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 154
>gi|416548886|ref|ZP_11755100.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363570705|gb|EHL54634.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
Length = 419
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KRGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKRGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENARNKIL 132
>gi|334702533|ref|ZP_08518399.1| transcription termination factor Rho [Aeromonas caviae Ae398]
Length = 421
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN ++PE S+N+ LF+NLTPLH + L +ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKVNDVNYDRPENSRNKILFENLTPLHANERLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRM 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRVYPAI++ +SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVYPAIDITRSGTRKEELLTAPDELQKMWILRKIIHPM 390
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 79/110 (71%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R K++++FAI K K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNDVNYDRPENSRNKIL 132
>gi|308051269|ref|YP_003914835.1| transcription termination factor Rho [Ferrimonas balearica DSM
9799]
gi|307633459|gb|ADN77761.1| transcription termination factor Rho [Ferrimonas balearica DSM
9799]
Length = 421
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE S+++ LF+NLTPLH L +ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKVSEVNFDRPESSRSKILFENLTPLHANDRLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTLLLQNIAQSIAYNHPECVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ N+SGTRREELL ++LQK+W+LRK+L
Sbjct: 343 LHLSRKIAERRVFPAIDFNRSGTRREELLAGSEELQKMWILRKIL 387
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAYNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK + ++A +++ LE ++ R RKQ+++FAI K K GE I+GDG LE+L DGFG
Sbjct: 6 LKQKPVSELVALAESMGLE--NLARARKQDILFAILKAHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSISGKIRPPKEGERYFALLKVSEVNFDR 123
Query: 492 PKSGKSIIL 500
P+S +S IL
Sbjct: 124 PESSRSKIL 132
>gi|325928806|ref|ZP_08189973.1| transcription termination factor Rho [Xanthomonas perforans 91-118]
gi|325540779|gb|EGD12354.1| transcription termination factor Rho [Xanthomonas perforans 91-118]
Length = 604
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 229 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 288
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 289 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 348
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 349 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 408
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 409 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 468
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 469 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 528
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 529 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 576
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 212 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 271
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 272 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 331
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 332 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 391
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 392 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 451
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 452 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 491
>gi|261492345|ref|ZP_05988907.1| transcription termination factor Rho [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496131|ref|ZP_05992539.1| transcription termination factor Rho [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261308233|gb|EEY09528.1| transcription termination factor Rho [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261312028|gb|EEY13169.1| transcription termination factor Rho [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 420
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 300/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE S+++ LF+NLTPLH L +ER SKE++T RI+
Sbjct: 104 PPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQR L+VA PK+GK+++LQ+IA +IT NH E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNT+ P SG
Sbjct: 224 VRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTITPVSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AE+R++PAI+ N+SGTR+++LL+ D+LQK W+LRK+L +
Sbjct: 344 LHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPM 391
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 171/293 (58%), Gaps = 83/293 (28%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNY 440
L E + + ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y
Sbjct: 14 LVEMGENQMGLENLARLRKQDIVFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSSDSSY 73
Query: 441 MASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL------------------- 481
+A DDIY+SPSQIRRFNL TG +G+IR PK GERYFAL
Sbjct: 74 LAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDSVNDDKPEASRSKIL 133
Query: 482 ------------LKIKKVN-------------------------VASPKSGKSIILQHIA 504
LK+++ N VA PK+GK+++LQ+IA
Sbjct: 134 FENLTPLHANSRLKMERGNGSKEDLTARILDLAAPIGKGQRALIVAPPKAGKTVLLQNIA 193
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------- 548
+IT NH E +IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 194 QSITHNHPECELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKR 253
Query: 549 -----------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT+ P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 254 SVEHKKDVVILLDSITRLARAYNTITPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|227114351|ref|ZP_03828007.1| transcription termination factor Rho [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|403060429|ref|YP_006648646.1| transcription termination factor Rho [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402807755|gb|AFR05393.1| transcription termination factor Rho [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 419
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|383815937|ref|ZP_09971343.1| transcription termination factor Rho [Serratia sp. M24T3]
gi|383295227|gb|EIC83555.1| transcription termination factor Rho [Serratia sp. M24T3]
Length = 419
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|354595737|ref|ZP_09013754.1| transcription termination factor Rho [Brenneria sp. EniD312]
gi|353673672|gb|EHD19705.1| transcription termination factor Rho [Brenneria sp. EniD312]
Length = 419
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|188532353|ref|YP_001906150.1| transcription termination factor Rho [Erwinia tasmaniensis Et1/99]
gi|188027395|emb|CAO95242.1| Transcription termination factor Rho [Erwinia tasmaniensis Et1/99]
Length = 419
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLARKIAEKRVFPAIDYNRSGTRKEELLTSSEELQKMWILRKIIHPM 390
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|419286648|ref|ZP_13828807.1| transcription termination factor Rho [Escherichia coli DEC10F]
gi|378125236|gb|EHW86638.1| transcription termination factor Rho [Escherichia coli DEC10F]
Length = 419
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|238899071|ref|YP_002924753.1| transcription termination factor Rho; polarity suppressor
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466831|gb|ACQ68605.1| transcription termination factor Rho; polarity suppressor
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 419
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ KVN +KPE ++N+ LF+NLTPLH LL+ R S E++T R++D
Sbjct: 104 PKEGERYFALLKVNKVNYDKPENARNKILFENLTPLHANSRLLMGRGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGCGQRGLIVAPPKAGKTMLLQNIASSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEM++EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SGK
Sbjct: 224 KGEVIASTFDEPAARHVQVAEMMIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R+++EKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKISEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIASSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 ARHVQVAEMMIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARIRKQDMIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ KVN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTVSGKIRPPKEGERYFALLKVNKVNYDKPENARNKIL 132
>gi|384085166|ref|ZP_09996341.1| transcription termination factor Rho [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 418
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/345 (72%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G+ I+G+G LE+L DGFGFLR+ +YMA DDIY+SPSQIRRF+L TGD V G+IR PK
Sbjct: 46 GDAIYGEGVLEILQDGFGFLRAASGSYMAGPDDIYVSPSQIRRFHLQTGDTVSGQIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK++ +N E PE ++N+ FD+LTPL P + L LE + + + RIIDL+
Sbjct: 106 EGERYFALLKVESINFESPEATRNKVNFDDLTPLFPDEPLRLEYDAVAYGEVAPRIIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIGKGQRGL+VA PK+GK+++LQ IAHAIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 SPIGKGQRGLIVAPPKTGKTVLLQQIAHAITANHPECYLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RH QVAE+VLEKAKRLVE K DV+ILLDSITRLARA+NTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHTQVAEIVLEKAKRLVEHKHDVVILLDSITRLARAFNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQ+PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNMEVHL
Sbjct: 286 TGGVDANALQKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMEVHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RRLAEKR YPAINLNKSGTRREELL+ D L K+WVLRKLL +
Sbjct: 346 DRRLAEKRTYPAINLNKSGTRREELLVPADLLSKMWVLRKLLAPM 390
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 168/286 (58%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++ R +KQE++F I K + G+ I+G+G LE+L DGFGFLR+ +YMA DDI
Sbjct: 20 EMGLDGTARQKKQEIIFNILKAHARNGDAIYGEGVLEILQDGFGFLRAASGSYMAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF+L TG G+IR PK GERYFALLK++ KVN
Sbjct: 80 YVSPSQIRRFHLQTGDTVSGQIRPPKEGERYFALLKVESINFESPEATRNKVNFDDLTPL 139
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA PK+GK+++LQ IAHAIT NH
Sbjct: 140 FPDEPLRLEYDAVAYGEVAPRIIDLVSPIGKGQRGLIVAPPKTGKTVLLQQIAHAITANH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 200 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHTQVAEIVLEKAKRLVEHKHD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARA+NTV+P+SGKVLTGGVD+NALQ+PKRFFGAAR
Sbjct: 260 VVILLDSITRLARAFNTVVPSSGKVLTGGVDANALQKPKRFFGAAR 305
>gi|254360529|ref|ZP_04976678.1| transcription termination factor Rho [Mannheimia haemolytica
PHL213]
gi|153091069|gb|EDN73074.1| transcription termination factor Rho [Mannheimia haemolytica
PHL213]
Length = 404
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 299/345 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 28 AKSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 87
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE S+++ LF+NLTPLH L +ER SKE++T RI+
Sbjct: 88 PPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTARIL 147
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQR L+VA PK+GK+++LQ+IA +IT NH E +IV+LIDERPEEVTEMQR+
Sbjct: 148 DLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVTEMQRT 207
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 208 VRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPVSG 267
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 268 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 327
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL RR+AE+R++PAI+ N+SGTR+++LL+ D+LQK W+LRK+L
Sbjct: 328 LHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVL 372
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/283 (48%), Positives = 168/283 (59%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+S
Sbjct: 8 LENLARLRKQDIVFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVS 67
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFAL----------------------------- 481
PSQIRRFNL TG +G+IR PK GERYFAL
Sbjct: 68 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHAN 127
Query: 482 --LKIKKVN-------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
LK+++ N VA PK+GK+++LQ+IA +IT NH E
Sbjct: 128 SRLKMERGNGSKEDLTARILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPEC 187
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 188 ELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVI 247
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 248 LLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 290
>gi|50123131|ref|YP_052298.1| transcription termination factor Rho [Pectobacterium atrosepticum
SCRI1043]
gi|49613657|emb|CAG77108.1| transcription termination factor Rho [Pectobacterium atrosepticum
SCRI1043]
Length = 419
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/278 (38%), Positives = 137/278 (49%), Gaps = 83/278 (29%)
Query: 396 RLRKQELMFAIFKKKTKIGERIF-----------------GDGSLEVLPDGFGFLRSQ-- 436
R+RKQ+++FAI K+ K GE IF GD S PD SQ
Sbjct: 28 RMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 437 -------------------GSNYMA---SSDDIYLSPSQIRR---FNLHTGILWKGEIRV 471
G Y A ++ Y P R F T + +R+
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRM 147
Query: 472 PK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVM 519
+ NG ++ + + VA PK+GK+++LQ+IA +I NH + +++V+
Sbjct: 148 ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207
Query: 520 LIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVM 552
LIDERPEEVTEMQR V+GEVIASTFDEPA L +
Sbjct: 208 LIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 267
Query: 553 CKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+LARAYNTV+PASGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 268 TRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAAR 305
>gi|333894610|ref|YP_004468485.1| transcription termination factor Rho [Alteromonas sp. SN2]
gi|332994628|gb|AEF04683.1| transcription termination factor Rho [Alteromonas sp. SN2]
Length = 421
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/349 (71%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI++VN +KPE S+N+ LF+NLTPLH L +ER S E+IT R++
Sbjct: 103 PPKDSERYFALLKIREVNFDKPENSRNKILFENLTPLHANDRLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEM R
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECELMVLLIDERPEEVTEMHRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VQGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL ++LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTSQEELQKMWILRKIVHEMS 391
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEM R V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAANHPECELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A ++ + LE ++ R RKQ+++F+I K K GE IFGDG LE+L DGFG
Sbjct: 6 LKNKPISELVAMSEEMGLE--NMARARKQDIIFSILKSHAKGGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+ ERYFALLKI++VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRNKIL 132
>gi|28199916|ref|NP_780230.1| transcription termination factor Rho [Xylella fastidiosa Temecula1]
gi|386084002|ref|YP_006000284.1| transcription termination factor Rho [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|28058047|gb|AAO29879.1| transcription termination factor Rho [Xylella fastidiosa Temecula1]
gi|307578949|gb|ADN62918.1| transcription termination factor Rho [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 426
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P+K LER S E+ITGRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRL+E KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AEKRVYPAI++N+SGTRRE+LLI+ D LQKIW+LRKLL+ +
Sbjct: 351 LHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPM 398
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 185 VSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 244
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD++AL R
Sbjct: 245 ARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHR 304
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 305 PKRFFGAAR 313
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 34 VARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 93
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G IR PK+GERYFAL + +N ++ K+ IL
Sbjct: 94 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKIL 140
>gi|84393641|ref|ZP_00992392.1| transcription termination factor Rho [Vibrio splendidus 12B01]
gi|84375709|gb|EAP92605.1| transcription termination factor Rho [Vibrio splendidus 12B01]
Length = 419
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/352 (70%), Positives = 305/352 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN +KP+ ++N+ LF+NLTPLH + +++E + E+IT RI+
Sbjct: 103 PPKDGERYFALLKVNTVNYDKPDNARNKILFENLTPLHANERMVMEAGNGATEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKPDELQKMWILRKIVHPMGETD 394
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 79/105 (75%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
RLRKQ+++F+I K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK+GERYFALLK+ VN P + ++ IL
Sbjct: 88 RFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPDNARNKIL 132
>gi|259906865|ref|YP_002647221.1| transcription termination factor Rho [Erwinia pyrifoliae Ep1/96]
gi|292486658|ref|YP_003529528.1| transcription termination factor rho [Erwinia amylovora CFBP1430]
gi|292897895|ref|YP_003537264.1| transcription termination factor Rho [Erwinia amylovora ATCC 49946]
gi|385786841|ref|YP_005817950.1| transcription termination factor Rho [Erwinia sp. Ejp617]
gi|387869574|ref|YP_005800944.1| transcription termination factor rho [Erwinia pyrifoliae DSM 12163]
gi|428783584|ref|ZP_19001079.1| Transcription termination factor rho [Erwinia amylovora ACW56400]
gi|224962487|emb|CAX53942.1| Transcription termination factor Rho [Erwinia pyrifoliae Ep1/96]
gi|283476657|emb|CAY72485.1| Transcription termination factor rho [Erwinia pyrifoliae DSM 12163]
gi|291197743|emb|CBJ44838.1| transcription termination factor Rho [Erwinia amylovora ATCC 49946]
gi|291552075|emb|CBA19112.1| Transcription termination factor rho [Erwinia amylovora CFBP1430]
gi|310766113|gb|ADP11063.1| transcription termination factor Rho [Erwinia sp. Ejp617]
gi|312170724|emb|CBX78986.1| Transcription termination factor rho [Erwinia amylovora ATCC
BAA-2158]
gi|426277870|gb|EKV55593.1| Transcription termination factor rho [Erwinia amylovora ACW56400]
Length = 419
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|49363|emb|CAA79852.1| Rho Factor [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 419
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG +E+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVVEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG +E+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKSGEDIFGDGVVEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENARNKIL 132
>gi|383936217|ref|ZP_09989646.1| transcription termination factor Rho [Rheinheimera nanhaiensis
E407-8]
gi|383702779|dbj|GAB59737.1| transcription termination factor Rho [Rheinheimera nanhaiensis
E407-8]
Length = 421
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/369 (68%), Positives = 308/369 (83%), Gaps = 2/369 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G IR
Sbjct: 43 AKNGEEIYGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +PE ++N+ LF+NLTPLH L +ER S+E+IT R++
Sbjct: 103 PPKEGERYFALLKVNEVNFGRPEQARNKILFENLTPLHANSRLRMERGNGSREDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTILLQNIAQSIAANHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL R++AE+RV+PAI+ N+SGTRREELL ++LQK+W+LRK+L + T F I
Sbjct: 343 LHLSRKIAERRVFPAIDFNRSGTRREELLASPEELQKMWILRKILNPMDETECME--FLI 400
Query: 362 KRTIPVEKN 370
R + + N
Sbjct: 401 DRLLMTKTN 409
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 153/293 (52%), Gaps = 87/293 (29%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGF---------- 430
LAE+ ++ ++ RLRKQ+++FAI K K GE I+GDG LE+L DGF
Sbjct: 17 LAESMGLE----NMARLRKQDIIFAILKSHAKNGEEIYGDGVLEILQDGFGFLRSGDSSY 72
Query: 431 --------------------------GFLR--SQGSNYMA---SSDDIYLSPSQIRR--- 456
G +R +G Y A ++ + P Q R
Sbjct: 73 LAGPDDIYVSPSQIRRFNLRTGDSISGLIRPPKEGERYFALLKVNEVNFGRPEQARNKIL 132
Query: 457 FNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIA 504
F T + +R+ + NG R ++ + + VA PK+GK+I+LQ+IA
Sbjct: 133 FENLTPLHANSRLRMERGNGSREDITARVLDLASPIGKGQRGLIVAPPKAGKTILLQNIA 192
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------- 548
+I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 193 QSIAANHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKR 252
Query: 549 -----------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFFGAAR
Sbjct: 253 LVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAAR 305
>gi|343517844|ref|ZP_08754840.1| transcription termination factor Rho [Haemophilus pittmaniae HK 85]
gi|343394695|gb|EGV07242.1| transcription termination factor Rho [Haemophilus pittmaniae HK 85]
Length = 399
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 302/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 23 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 82
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 83 PPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 142
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 143 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRS 202
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 203 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 262
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 263 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 322
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 323 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 367
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 3 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 62
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 63 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDRPEVSRSKILFENL-TPLHA 121
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ E
Sbjct: 122 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPE 181
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 182 CELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 241
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 242 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 285
>gi|442609863|ref|ZP_21024596.1| Transcription termination factor Rho [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441748657|emb|CCQ10658.1| Transcription termination factor Rho [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 420
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/349 (71%), Positives = 306/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G IR
Sbjct: 43 SKSGENIYGDGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFNLRTGDTISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE S+ + LF+NLTP+H + L +ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDRPENSRTKILFENLTPIHANERLTMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ +A +IV+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNNPDAQLIVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKADELQKMWILRKIVHEMS 391
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/283 (48%), Positives = 169/283 (59%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ +V RLRKQ+++FAI K +K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 LENVARLRKQDIIFAILKAHSKSGENIYGDGVLEILQDGFGFLRSSEASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFNL TG G IR PK GERYFALLK+ +VN
Sbjct: 83 PSQIRRFNLRTGDTISGLIRPPKEGERYFALLKVNEVNYDRPENSRTKILFENLTPIHAN 142
Query: 489 ---------------------VASP-------------KSGKSIILQHIAHAITTNHSEA 514
+ASP K+GK+++LQ+IA +IT N+ +A
Sbjct: 143 ERLTMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNNPDA 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 203 QLIVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAAR 305
>gi|335421071|ref|ZP_08552100.1| transcription termination factor Rho [Salinisphaera shabanensis
E1L3A]
gi|334893102|gb|EGM31324.1| transcription termination factor Rho [Salinisphaera shabanensis
E1L3A]
Length = 503
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GERI+GDG LE+L DGFGFLRS S+YMA DDIY+SPSQIRRF L TGD + G IR
Sbjct: 128 AKSGERIYGDGVLEILSDGFGFLRSGESSYMAGPDDIYVSPSQIRRFALRTGDNISGRIR 187
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK ERYFALLK+ ++NG+ PE SK + LF+NLTPL P + +++E S E+IT R I
Sbjct: 188 PPKESERYFALLKVDEINGDPPEKSKGKVLFENLTPLFPTERMVMELGNGSTEDITARTI 247
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQRGL+V+ PK+GK++++Q+IA +I N+ E +IV+LIDERPEEVTEM+RS
Sbjct: 248 DLVAPFGKGQRGLIVSPPKAGKTMMMQNIAQSIAQNYPECHLIVLLIDERPEEVTEMERS 307
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV++STFDEPA RHVQVA+MV+EKAKRLVE KKDV+ILLDS+TRLARAYNT P+SG
Sbjct: 308 VRGEVVSSTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSLTRLARAYNTTAPSSG 367
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQ+PKRFFGAARN+EEGGSLTI+ATALIETGS+MD+VIYEEFKGTGNME
Sbjct: 368 KVLTGGVDANALQKPKRFFGAARNVEEGGSLTILATALIETGSKMDEVIYEEFKGTGNME 427
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VH++RR+AEKR+YPAI++N+SGTRREE L+ D+LQ++WVLRKLL+S+
Sbjct: 428 VHMDRRIAEKRIYPAIHVNRSGTRREEKLVPQDELQRMWVLRKLLHSM 475
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q+IA +I N+ E +IV+LIDERPEEVTEM+RSVRGEV++STFDEPA
Sbjct: 262 VSPPKAGKTMMMQNIAQSIAQNYPECHLIVLLIDERPEEVTEMERSVRGEVVSSTFDEPA 321
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNT P+SGKVLTGGVD+NALQ+
Sbjct: 322 SRHVQVADMVIEKAKRLVEHKKDVVILLDSLTRLARAYNTTAPSSGKVLTGGVDANALQK 381
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 382 PKRFFGAAR 390
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 82/113 (72%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++++ ++ R+RKQ+L+FA+ K K GERI+GDG LE+L DGFGFLRS S+YMA DDI
Sbjct: 105 EMQLENISRMRKQDLIFAMLKGHAKSGERIYGDGVLEILSDGFGFLRSGESSYMAGPDDI 164
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRF L TG G IR PK ERYFALLK+ ++N P+ K +L
Sbjct: 165 YVSPSQIRRFALRTGDNISGRIRPPKESERYFALLKVDEINGDPPEKSKGKVL 217
>gi|290477134|ref|YP_003470049.1| transcription termination factor Rho; polarity suppressor
[Xenorhabdus bovienii SS-2004]
gi|289176482|emb|CBJ83291.1| transcription termination factor Rho; polarity suppressor
[Xenorhabdus bovienii SS-2004]
Length = 419
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANNRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG+GQRGL+VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIANNYPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQDELQKMWILRKIIHPM 390
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIANNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|255020937|ref|ZP_05292993.1| Transcription termination factor Rho [Acidithiobacillus caldus ATCC
51756]
gi|340781554|ref|YP_004748161.1| transcription termination factor Rho [Acidithiobacillus caldus
SM-1]
gi|254969728|gb|EET27234.1| Transcription termination factor Rho [Acidithiobacillus caldus ATCC
51756]
gi|340555707|gb|AEK57461.1| Transcription termination factor Rho [Acidithiobacillus caldus
SM-1]
Length = 456
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G+ I+GDG LE+L DGFGFLR+ +YMA DDIY+SPSQ+RRF+L TGD V G+IR PK
Sbjct: 84 GDAIYGDGVLEILQDGFGFLRAASGSYMAGPDDIYVSPSQVRRFHLQTGDTVSGQIRPPK 143
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK++ +N E P+ ++N+ FD+LTPL P++ L LE + + RIIDL+
Sbjct: 144 EGERYFALLKVESINFEGPDATRNKVNFDDLTPLFPEERLRLESDNIPYGEVAPRIIDLV 203
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIGKGQRGL+VA PK+GK+++LQ +AHAIT NH E +IV+LIDERPEEVTEMQRSV+G
Sbjct: 204 SPIGKGQRGLIVAPPKTGKTVLLQQVAHAITANHPECYLIVLLIDERPEEVTEMQRSVKG 263
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAE+VLEKAKRLVE K DV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 264 EVVSSTFDEPATRHVQVAEIVLEKAKRLVEHKHDVVILLDSITRLARAYNTVVPSSGKVL 323
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQ+PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNMEVHL
Sbjct: 324 TGGVDANALQKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMEVHL 383
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RRLAEKR YPAIN+NKSGTRREELL+ D L K+W+LRKLL +
Sbjct: 384 DRRLAEKRTYPAININKSGTRREELLVPADILSKMWILRKLLAPM 428
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 169/286 (59%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
D+ ++ RL+KQE++F I K + G+ I+GDG LE+L DGFGFLR+ +YMA DDI
Sbjct: 58 DMGLDGTSRLKKQEIIFNILKAHARNGDAIYGDGVLEILQDGFGFLRAASGSYMAGPDDI 117
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQ+RRF+L TG G+IR PK GERYFALLK++ KVN
Sbjct: 118 YVSPSQVRRFHLQTGDTVSGQIRPPKEGERYFALLKVESINFEGPDATRNKVNFDDLTPL 177
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA PK+GK+++LQ +AHAIT NH
Sbjct: 178 FPEERLRLESDNIPYGEVAPRIIDLVSPIGKGQRGLIVAPPKTGKTVLLQQVAHAITANH 237
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEMQRSV+GEV++STFDEPA
Sbjct: 238 PECYLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPATRHVQVAEIVLEKAKRLVEHKHD 297
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQ+PKRFFGAAR
Sbjct: 298 VVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQKPKRFFGAAR 343
>gi|409395522|ref|ZP_11246592.1| transcription termination factor Rho [Pseudomonas sp. Chol1]
gi|409395620|ref|ZP_11246683.1| transcription termination factor Rho [Pseudomonas sp. Chol1]
gi|409119775|gb|EKM96150.1| transcription termination factor Rho [Pseudomonas sp. Chol1]
gi|409119904|gb|EKM96276.1| transcription termination factor Rho [Pseudomonas sp. Chol1]
Length = 419
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINYDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ + +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LTAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPDCHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGN+E+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+NKSGTRREELL +D+LQ++W+LRKLL+ +
Sbjct: 344 QLDRRIAEKRVFPAININKSGTRREELLTSEDELQRMWILRKLLHPM 390
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ + +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPDCHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKGGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSINYDRPENAKNKIL 132
>gi|437529066|ref|ZP_20780270.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435245857|gb|ELO25885.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
Length = 419
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A +DIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPNDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A +DIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPNDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENARNKIL 132
>gi|261868795|ref|YP_003256717.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|387120915|ref|YP_006286798.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|416049506|ref|ZP_11576647.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416071734|ref|ZP_11583893.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|261414127|gb|ACX83498.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|347991509|gb|EGY32974.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347998365|gb|EGY39294.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|385875407|gb|AFI86966.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 412
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 36 AKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 95
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 96 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 155
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 156 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 215
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 216 VKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVVILLDSITRLARAYNTVTPASG 275
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 276 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 335
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L +
Sbjct: 336 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKILNPM 383
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 16 LENLARLRKQDIIFAILKQHAKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVS 75
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 76 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 134
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 135 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 194
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 195 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVV 254
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 255 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 298
>gi|448239943|ref|YP_007403996.1| transcription termination factor [Serratia marcescens WW4]
gi|445210307|gb|AGE15977.1| transcription termination factor [Serratia marcescens WW4]
gi|453064552|gb|EMF05517.1| transcription termination factor Rho [Serratia marcescens VGH107]
Length = 419
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|415766448|ref|ZP_11482964.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|415770050|ref|ZP_11484665.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416074238|ref|ZP_11584468.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416108691|ref|ZP_11591186.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|429734158|ref|ZP_19268194.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans Y4]
gi|444346366|ref|ZP_21154333.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|348004216|gb|EGY44741.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348006926|gb|EGY47291.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348653608|gb|EGY69312.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|348657083|gb|EGY74680.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|429152922|gb|EKX95721.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans Y4]
gi|443541707|gb|ELT52113.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 420
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 302/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIIFAILKQHAKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|317046376|ref|YP_004114024.1| transcription termination factor Rho [Pantoea sp. At-9b]
gi|316947993|gb|ADU67468.1| transcription termination factor Rho [Pantoea sp. At-9b]
Length = 419
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTSSEELQKMWILRKIIHPM 390
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|320540200|ref|ZP_08039855.1| transcription termination factor [Serratia symbiotica str. Tucson]
gi|320029866|gb|EFW11890.1| transcription termination factor [Serratia symbiotica str. Tucson]
Length = 419
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|251787808|ref|YP_003002529.1| transcription termination factor Rho [Dickeya zeae Ech1591]
gi|247536429|gb|ACT05050.1| transcription termination factor Rho [Dickeya zeae Ech1591]
Length = 419
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/350 (70%), Positives = 304/350 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ + T
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPMGET 393
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|300714783|ref|YP_003739586.1| transcription termination factor Rho [Erwinia billingiae Eb661]
gi|299060619|emb|CAX57726.1| Transcription termination factor Rho [Erwinia billingiae Eb661]
Length = 419
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTSSEELQKMWILRKIIHPM 390
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|78049512|ref|YP_365687.1| transcription termination factor Rho [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037942|emb|CAJ25687.1| transcription termination factor Rho [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 420
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 45 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 104
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 105 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 164
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 165 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 224
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 225 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 284
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 285 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 344
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 345 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 392
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 28 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 87
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 88 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 147
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 148 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 207
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 208 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 267
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 268 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 307
>gi|271502410|ref|YP_003335436.1| transcription termination factor Rho [Dickeya dadantii Ech586]
gi|307133001|ref|YP_003885017.1| transcription termination factor [Dickeya dadantii 3937]
gi|270345965|gb|ACZ78730.1| transcription termination factor Rho [Dickeya dadantii Ech586]
gi|306530530|gb|ADN00461.1| transcription termination factor [Dickeya dadantii 3937]
Length = 419
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|261823428|ref|YP_003261534.1| transcription termination factor Rho [Pectobacterium wasabiae
WPP163]
gi|421079811|ref|ZP_15540747.1| Transcription termination factor Rho [Pectobacterium wasabiae CFBP
3304]
gi|261607441|gb|ACX89927.1| transcription termination factor Rho [Pectobacterium wasabiae
WPP163]
gi|385873898|gb|AFI92418.1| Transcription termination factor Rho [Pectobacterium sp. SCC3193]
gi|401705298|gb|EJS95485.1| Transcription termination factor Rho [Pectobacterium wasabiae CFBP
3304]
Length = 450
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 75 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 134
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN ++PE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 135 PKEGERYFALLKVNEVNYDRPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 194
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 195 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 254
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 255 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 314
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 315 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 374
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 375 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 421
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 208 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 267
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 268 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 327
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 328 PKRFFGAAR 336
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 92/135 (68%)
Query: 366 PVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEV 425
P NL + P+ T ++ + + R+RKQ+++FAI K+ K GE IFGDG LE+
Sbjct: 29 PTTMNLTELKNTPVSELITLGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEI 88
Query: 426 LPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK 485
L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+
Sbjct: 89 LQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVN 148
Query: 486 KVNVASPKSGKSIIL 500
+VN P++ ++ IL
Sbjct: 149 EVNYDRPENARNKIL 163
>gi|395233136|ref|ZP_10411381.1| transcription termination factor Rho [Enterobacter sp. Ag1]
gi|394732483|gb|EJF32156.1| transcription termination factor Rho [Enterobacter sp. Ag1]
Length = 419
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|21233206|ref|NP_639123.1| transcription termination factor Rho [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66770148|ref|YP_244910.1| transcription termination factor Rho [Xanthomonas campestris pv.
campestris str. 8004]
gi|21115554|gb|AAM43478.1| transcription termination factor Rho [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575480|gb|AAY50890.1| transcription termination factor Rho [Xanthomonas campestris pv.
campestris str. 8004]
Length = 426
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 351 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 398
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 34 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 93
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 94 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 153
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 154 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 213
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 214 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 273
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 274 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 313
>gi|365966541|ref|YP_004948103.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|365745454|gb|AEW76359.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans ANH9381]
Length = 420
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 302/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIIFAILKQHAKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|387891050|ref|YP_006321348.1| transcription termination factor Rho [Escherichia blattae DSM 4481]
gi|414595307|ref|ZP_11444933.1| transcription termination factor Rho [Escherichia blattae NBRC
105725]
gi|386925883|gb|AFJ48837.1| transcription termination factor Rho [Escherichia blattae DSM 4481]
gi|403193728|dbj|GAB82585.1| transcription termination factor Rho [Escherichia blattae NBRC
105725]
Length = 419
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|430762859|ref|YP_007218716.1| Transcription termination factor Rho [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430012483|gb|AGA35235.1| Transcription termination factor Rho [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 419
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/348 (69%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLR S+Y+A DD+Y+SPSQIRRF L TGD + G+IR
Sbjct: 43 AKNGEPIFGDGVLEILSDGFGFLRGADSSYLAGPDDVYVSPSQIRRFGLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLK+ ++N E PE ++++ LF+NLTPLHP + +ER S E+IT R+I
Sbjct: 103 PPKDNERYFALLKVSEINFEPPENARHKVLFENLTPLHPNARMRMERGNGSTEDITARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP GKGQRGL+V+ PK+GK+++LQ+IA +I TN+ + +IV+LIDERPEEVTEM R
Sbjct: 163 DMVAPFGKGQRGLIVSPPKAGKTLMLQNIAQSIATNYPDCYLIVLLIDERPEEVTEMTRM 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VQGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARNIEEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL+RR+AEKRVYPAIN+N+SGTRREELL + D+LQK+W+LRK L+ +
Sbjct: 343 IHLDRRIAEKRVYPAINVNRSGTRREELLTEPDELQKLWILRKFLHGM 390
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +I TN+ + +IV+LIDERPEEVTEM R V+GEV++STFDEPA
Sbjct: 177 VSPPKAGKTLMLQNIAQSIATNYPDCYLIVLLIDERPEEVTEMTRMVQGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 87/128 (67%), Gaps = 4/128 (3%)
Query: 373 KDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGF 432
K A + AE+Q ID ++ R RKQ+++F++ K K GE IFGDG LE+L DGFGF
Sbjct: 9 KTAAELVAFAESQGID----NMSRARKQDIIFSLLKAHAKNGEPIFGDGVLEILSDGFGF 64
Query: 433 LRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
LR S+Y+A DD+Y+SPSQIRRF L TG G+IR PK+ ERYFALLK+ ++N P
Sbjct: 65 LRGADSSYLAGPDDVYVSPSQIRRFGLRTGDTISGKIRPPKDNERYFALLKVSEINFEPP 124
Query: 493 KSGKSIIL 500
++ + +L
Sbjct: 125 ENARHKVL 132
>gi|418464814|ref|ZP_13035753.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756769|gb|EHK90926.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 420
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 302/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIIFAILKQHAKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|77461677|ref|YP_351184.1| transcription termination factor Rho [Pseudomonas fluorescens
Pf0-1]
gi|77385680|gb|ABA77193.1| transcription termination factor [Pseudomonas fluorescens Pf0-1]
Length = 419
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+NKSGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININKSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|251793199|ref|YP_003007927.1| transcription termination factor Rho [Aggregatibacter aphrophilus
NJ8700]
gi|315633655|ref|ZP_07888945.1| transcription termination factor rho [Aggregatibacter segnis ATCC
33393]
gi|422336735|ref|ZP_16417708.1| transcription termination factor Rho [Aggregatibacter aphrophilus
F0387]
gi|247534594|gb|ACS97840.1| transcription termination factor Rho [Aggregatibacter aphrophilus
NJ8700]
gi|315477697|gb|EFU68439.1| transcription termination factor rho [Aggregatibacter segnis ATCC
33393]
gi|353346047|gb|EHB90334.1| transcription termination factor Rho [Aggregatibacter aphrophilus
F0387]
Length = 420
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 302/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKGGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKGGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|319788361|ref|YP_004147836.1| transcription termination factor Rho [Pseudoxanthomonas suwonensis
11-1]
gi|317466873|gb|ADV28605.1| transcription termination factor Rho [Pseudoxanthomonas suwonensis
11-1]
Length = 586
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 211 TRHGEGVQADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 270
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+TLF+NLTPL P++ LER S E+ITGRI+
Sbjct: 271 WPKDGERYFALSVVDTINGEPLEASKNKTLFENLTPLFPRRRFRLERGDGSTEDITGRIL 330
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 331 DLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 390
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 391 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 450
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 451 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNSE 510
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRV+PAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 511 VHLSRRIAEKRVFPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 558
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 126/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 194 VARARKQDVIFALLKVLTRHGEGVQADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 253
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 254 IRRFNLRTGDHLSGRIRWPKDGERYFALSVVDTINGEPLEASKNKTLFENLTPLFPRRRF 313
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH + +I
Sbjct: 314 RLERGDGSTEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLI 373
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 374 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 433
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 434 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 473
>gi|407793559|ref|ZP_11140592.1| transcription termination factor Rho [Idiomarina xiamenensis
10-D-4]
gi|407214636|gb|EKE84480.1| transcription termination factor Rho [Idiomarina xiamenensis
10-D-4]
Length = 422
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+G G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGGGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTLGGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLKI++VN +KPE S+N+ LF+NLTPLH + L +ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKIREVNHDKPENSRNKILFENLTPLHADERLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH EA ++V+LIDERPEEVTEM R
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTLLLQNIAQSIAANHPEAELMVLLIDERPEEVTEMHRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTTPDELQKMWILRKIIHPM 390
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 172/293 (58%), Gaps = 87/293 (29%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNY 440
LAE+ ++ ++ R+RKQ+++FAI K K GE I+G G LE+L DGFGFLRS S+Y
Sbjct: 17 LAESMGLE----NMARMRKQDMIFAILKAHAKSGEDIYGGGVLEILQDGFGFLRSADSSY 72
Query: 441 MASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------ 488
+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLKI++VN
Sbjct: 73 LAGPDDIYVSPSQIRRFNLRTGDTLGGKIRPPKEGERYFALLKIREVNHDKPENSRNKIL 132
Query: 489 -------------------------------VASP-------------KSGKSIILQHIA 504
+ASP K+GK+++LQ+IA
Sbjct: 133 FENLTPLHADERLRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPPKAGKTLLLQNIA 192
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------- 548
+I NH EA ++V+LIDERPEEVTEM R V+GEV+ASTFDEPA
Sbjct: 193 QSIAANHPEAELMVLLIDERPEEVTEMHRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252
Query: 549 -----------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFFGAAR
Sbjct: 253 LVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAAR 305
>gi|288940346|ref|YP_003442586.1| transcription termination factor Rho [Allochromatium vinosum DSM
180]
gi|298286872|sp|P52152.2|RHO_ALLVD RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|288895718|gb|ADC61554.1| transcription termination factor Rho [Allochromatium vinosum DSM
180]
Length = 418
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 304/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD + G+I
Sbjct: 42 QAKKGEDIYGDGVLEILSDGFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ +N ++PE +K++ LF+N TPL +K L LE S E+IT R
Sbjct: 102 RPPKDGERYFALLKVNDINFDRPENAKSKILFENFTPLFAQKRLTLEIGNGSTEDITART 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGL+V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDLVAPIGKGQRGLIVSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMAR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+H++RR+AEKR++PAIN+N+SGTRREELL+ +LQK+W+LRK+L+ +
Sbjct: 342 EIHMDRRIAEKRIFPAININRSGTRREELLMGQAELQKMWILRKILHPM 390
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 136/302 (45%), Positives = 172/302 (56%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++A Q++D+E V R RKQ+L+FAI K + K GE I+GDG LE+L DGFG
Sbjct: 6 LKKMPVPNLVALAQSMDIE--GVGRSRKQDLIFAILKAQAKKGEDIYGDGVLEILSDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNG---------------- 475
FLRS ++Y+A DDIY+SPSQIRRF L TG G+IR PK+G
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVNDINFDR 123
Query: 476 ----------ERYFALLKIKKVN------------------------------VASPKSG 495
E + L K++ V+ PK+G
Sbjct: 124 PENAKSKILFENFTPLFAQKRLTLEIGNGSTEDITARTIDLVAPIGKGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH + +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 184 KTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|416052800|ref|ZP_11578435.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347991592|gb|EGY33055.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 412
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 36 AKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 95
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 96 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 155
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 156 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 215
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 216 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 275
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 276 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 335
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L +
Sbjct: 336 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKILNPM 383
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 16 LENLARLRKQDIIFAILKQHAKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVS 75
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 76 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 134
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 135 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 194
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 195 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 254
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 255 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 298
>gi|416893530|ref|ZP_11924680.1| transcription termination factor Rho [Aggregatibacter aphrophilus
ATCC 33389]
gi|347813820|gb|EGY30473.1| transcription termination factor Rho [Aggregatibacter aphrophilus
ATCC 33389]
Length = 412
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 36 AKGGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 95
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 96 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 155
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 156 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 215
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 216 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 275
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 276 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 335
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L +
Sbjct: 336 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKILNPM 383
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 16 LENLARLRKQDIVFAILKQHAKGGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 75
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 76 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 134
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 135 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 194
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 195 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 254
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 255 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 298
>gi|21244555|ref|NP_644137.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
citri str. 306]
gi|381170744|ref|ZP_09879898.1| transcription termination factor Rho [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|390990444|ref|ZP_10260729.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|418515554|ref|ZP_13081734.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418523016|ref|ZP_13089043.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|21110230|gb|AAM38673.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
citri str. 306]
gi|372554767|emb|CCF67704.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|380688796|emb|CCG36385.1| transcription termination factor Rho [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|410700491|gb|EKQ59044.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410707852|gb|EKQ66302.1| transcription termination factor Rho [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 426
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 351 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 398
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 34 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 93
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 94 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 153
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 154 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 213
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 214 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 273
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 274 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 313
>gi|389682350|ref|ZP_10173692.1| transcription termination factor Rho [Pseudomonas chlororaphis O6]
gi|399007701|ref|ZP_10710203.1| transcription termination factor Rho [Pseudomonas sp. GM17]
gi|425902247|ref|ZP_18878838.1| transcription termination factor Rho [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|388553793|gb|EIM17044.1| transcription termination factor Rho [Pseudomonas chlororaphis O6]
gi|397884468|gb|EJL00952.1| transcription termination factor Rho [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|398119473|gb|EJM09162.1| transcription termination factor Rho [Pseudomonas sp. GM17]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSSDASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSSDASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|157368409|ref|YP_001476398.1| transcription termination factor Rho [Serratia proteamaculans 568]
gi|270264232|ref|ZP_06192499.1| transcription termination factor rho [Serratia odorifera 4Rx13]
gi|333925014|ref|YP_004498593.1| transcription termination factor Rho [Serratia sp. AS12]
gi|333929967|ref|YP_004503545.1| transcription termination factor Rho [Serratia plymuthica AS9]
gi|386326838|ref|YP_006023008.1| transcription termination factor Rho [Serratia sp. AS13]
gi|421781100|ref|ZP_16217573.1| transcription termination factor Rho [Serratia plymuthica A30]
gi|157320173|gb|ABV39270.1| transcription termination factor Rho [Serratia proteamaculans 568]
gi|270041881|gb|EFA14978.1| transcription termination factor rho [Serratia odorifera 4Rx13]
gi|333471574|gb|AEF43284.1| transcription termination factor Rho [Serratia plymuthica AS9]
gi|333489074|gb|AEF48236.1| transcription termination factor Rho [Serratia sp. AS12]
gi|333959171|gb|AEG25944.1| transcription termination factor Rho [Serratia sp. AS13]
gi|407756772|gb|EKF66882.1| transcription termination factor Rho [Serratia plymuthica A30]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSVSGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDSVSGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|238918070|ref|YP_002931584.1| transcription termination factor Rho, putative [Edwardsiella
ictaluri 93-146]
gi|269137458|ref|YP_003294158.1| transcription termination factor [Edwardsiella tarda EIB202]
gi|387866219|ref|YP_005697688.1| Transcription termination factor Rho [Edwardsiella tarda FL6-60]
gi|451967238|ref|ZP_21920483.1| transcription termination factor Rho [Edwardsiella tarda NBRC
105688]
gi|238867638|gb|ACR67349.1| transcription termination factor Rho, putative [Edwardsiella
ictaluri 93-146]
gi|267983118|gb|ACY82947.1| transcription termination factor [Edwardsiella tarda EIB202]
gi|304557532|gb|ADM40196.1| Transcription termination factor Rho [Edwardsiella tarda FL6-60]
gi|451313956|dbj|GAC65845.1| transcription termination factor Rho [Edwardsiella tarda NBRC
105688]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTPEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ +S IL
Sbjct: 124 PENARSKIL 132
>gi|410093637|ref|ZP_11290113.1| transcription termination factor Rho [Pseudomonas viridiflava
UASWS0038]
gi|409758954|gb|EKN44205.1| transcription termination factor Rho [Pseudomonas viridiflava
UASWS0038]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPNVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ K+ K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKRHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|388546964|ref|ZP_10150234.1| transcription termination factor Rho [Pseudomonas sp. M47T1]
gi|388274885|gb|EIK94477.1| transcription termination factor Rho [Pseudomonas sp. M47T1]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|94676908|ref|YP_588645.1| transcription termination factor Rho [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
gi|94220058|gb|ABF14217.1| transcription termination factor Rho [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 302/348 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANLRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG GQRGL+VA PK+GK++++Q+IA +IT N+ ++IV+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGCGQRGLIVAPPKAGKTMLMQNIAQSITYNYPNCVLIVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVMILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMC 391
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK++++Q+IA +IT N+ ++IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLMQNIAQSITYNYPNCVLIVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVMILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 83/110 (75%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R+RKQ+++FA K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENIARMRKQDIIFATLKQHAKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|294626524|ref|ZP_06705123.1| transcription termination factor Rho [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665091|ref|ZP_06730395.1| transcription termination factor Rho [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599214|gb|EFF43352.1| transcription termination factor Rho [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605133|gb|EFF48480.1| transcription termination factor Rho [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 444
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 69 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 128
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 129 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 188
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 189 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 248
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 249 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 308
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 309 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 368
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 369 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 416
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 52 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 111
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 112 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 171
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 172 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 231
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 232 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 291
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 292 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 331
>gi|398974517|ref|ZP_10685106.1| transcription termination factor Rho [Pseudomonas sp. GM25]
gi|398141475|gb|EJM30395.1| transcription termination factor Rho [Pseudomonas sp. GM25]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPNVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+NKSGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININKSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|416036917|ref|ZP_11573871.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347996020|gb|EGY37148.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
Length = 393
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 23 AKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 82
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 83 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 142
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 143 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 202
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 203 VKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVVILLDSITRLARAYNTVTPASG 262
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 263 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 322
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L +
Sbjct: 323 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKILNPM 370
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 3 LENLARLRKQDIIFAILKQHAKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIYVS 62
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 63 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 121
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 122 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 181
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 182 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVV 241
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 242 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 285
>gi|304309756|ref|YP_003809354.1| transcription termination factor Rho [gamma proteobacterium HdN1]
gi|301795489|emb|CBL43687.1| Transcription termination factor Rho [gamma proteobacterium HdN1]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/351 (70%), Positives = 305/351 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS +Y+A DDIY+SPSQ+RRFNL TGD + G+IR
Sbjct: 44 KGGEDIYGDGVLEILQDGFGFLRSSEGSYLAGPDDIYVSPSQVRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N + P +KN+ LF+NLTPL P++ L E S E+IT R+ID
Sbjct: 104 PKEGERYFALLKVNDINYDVPASTKNKVLFENLTPLFPQQRLKAELGNGSTEDITARVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP GKGQRGL++A PK+GK+++LQ+IAH+I+ N+ E I+IV+LIDERPEEVT+M+RSV
Sbjct: 164 LVAPFGKGQRGLIIAPPKAGKTMMLQNIAHSISRNNPECILIVLLIDERPEEVTDMRRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
R EV+ASTFDEP RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RAEVVASTFDEPPTRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL+RPKRFFGAARNIEEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALERPKRFFGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL+RR++EKRV+PAIN+NKSGTRRE+LL +D+L+K+W+LRK+L+ + S
Sbjct: 344 HLDRRVSEKRVFPAININKSGTRREDLLTSEDELKKMWILRKILHPMDEIS 394
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
+A PK+GK+++LQ+IAH+I+ N+ E I+IV+LIDERPEEVT+M+RSVR EV+ASTFDEP
Sbjct: 177 IAPPKAGKTMMLQNIAHSISRNNPECILIVLLIDERPEEVTDMRRSVRAEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL+R
Sbjct: 237 TRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 82/113 (72%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R RKQ+++FAI K+ K GE I+GDG LE+L DGFGFLRS +Y+A DDI
Sbjct: 20 EMGLENIARTRKQDIIFAILKRHAKGGEDIYGDGVLEILQDGFGFLRSSEGSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQ+RRFNL TG G+IR PK GERYFALLK+ +N P S K+ +L
Sbjct: 80 YVSPSQVRRFNLRTGDTISGKIRPPKEGERYFALLKVNDINYDVPASTKNKVL 132
>gi|304398132|ref|ZP_07380007.1| transcription termination factor Rho [Pantoea sp. aB]
gi|308188837|ref|YP_003932968.1| transcription termination factor rho [Pantoea vagans C9-1]
gi|381403524|ref|ZP_09928208.1| transcription termination factor Rho [Pantoea sp. Sc1]
gi|440759191|ref|ZP_20938339.1| Transcription termination factor Rho [Pantoea agglomerans 299R]
gi|304354418|gb|EFM18790.1| transcription termination factor Rho [Pantoea sp. aB]
gi|308059347|gb|ADO11519.1| Transcription termination factor rho [Pantoea vagans C9-1]
gi|380736723|gb|EIB97786.1| transcription termination factor Rho [Pantoea sp. Sc1]
gi|436427058|gb|ELP24747.1| Transcription termination factor Rho [Pantoea agglomerans 299R]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH K L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANKRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA ++ N+ + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSLAYNYPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLARKIAEKRVFPAIDYNRSGTRKEELLTSQEELQKMWILRKIIHPM 390
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA ++ N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSLAYNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|422643581|ref|ZP_16706720.1| transcription termination factor Rho [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330957134|gb|EGH57394.1| transcription termination factor Rho [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/348 (72%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 SKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+I
Sbjct: 103 PPKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTIRMKMEAGNGSTEDLTGRVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+
Sbjct: 163 DLCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+ L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 343 LPLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 82/110 (74%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ K+ +K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKRHSKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|357407277|ref|YP_004919201.1| transcription termination factor (ATP-dependent helicase rho)
[Methylomicrobium alcaliphilum 20Z]
gi|351719942|emb|CCE25618.1| transcription termination factor (ATP-dependent helicase rho)
[Methylomicrobium alcaliphilum 20Z]
Length = 418
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 300/349 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG LE+L DGFGFLR+ G +Y+A DDIY+SPSQIRRFNL TGD V G+I
Sbjct: 42 QAKSGEDIYGDGVLEILQDGFGFLRTPGCSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK ERYFA+LK++ +N E PE +KN+ LF NLTPL P LE+ + E++TGRI
Sbjct: 102 RPPKESERYFAMLKVQNINFEAPENTKNKILFTNLTPLFPNVRFTLEKGNGTSEDLTGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGL+V+ PK+GK++I+Q +AH+I + E +IV+LIDERPEEVTEM+R
Sbjct: 162 IDLIAPIGKGQRGLIVSPPKAGKTMIMQSLAHSIAEKNPECYLIVLLIDERPEEVTEMER 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
VRGEVI+STFDEPA RHVQVA+MV+EKA+RLVE K DV+ILLDSITRLARA+NTV+P+S
Sbjct: 222 CVRGEVISSTFDEPATRHVQVADMVIEKARRLVEHKHDVVILLDSITRLARAFNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NAL++PKRFFGAARNIEEGGSLTIIATALI+TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALEKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+R+LAEKR+YPAIN+N+SGTRREE L+ ++LQK W+LRK+L +
Sbjct: 342 ELHLDRKLAEKRIYPAININRSGTRREEYLVDSEELQKTWILRKILQPM 390
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++I+Q +AH+I + E +IV+LIDERPEEVTEM+R VRGEVI+STFDEPA
Sbjct: 177 VSPPKAGKTMIMQSLAHSIAEKNPECYLIVLLIDERPEEVTEMERCVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARA+NTV+P+SGKVLTGGVD+NAL++
Sbjct: 237 TRHVQVADMVIEKARRLVEHKHDVVILLDSITRLARAFNTVVPSSGKVLTGGVDANALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 85/112 (75%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + +V R RKQ+L+FAI KK+ K GE I+GDG LE+L DGFGFLR+ G +Y+A DDIY
Sbjct: 21 LGLENVARTRKQDLIFAILKKQAKSGEDIYGDGVLEILQDGFGFLRTPGCSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNL TG G+IR PK ERYFA+LK++ +N +P++ K+ IL
Sbjct: 81 VSPSQIRRFNLRTGDTVSGKIRPPKESERYFAMLKVQNINFEAPENTKNKIL 132
>gi|421497532|ref|ZP_15944696.1| transcription termination factor Rho [Aeromonas media WS]
gi|407183476|gb|EKE57369.1| transcription termination factor Rho [Aeromonas media WS]
Length = 411
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 33 AKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIR 92
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE +N+ LF+NLTPLH + L +ER S E+IT R++
Sbjct: 93 PPKEGERYFALLKVNEVNYDRPENVRNKILFENLTPLHANERLRMERGNGSTEDITARVL 152
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR
Sbjct: 153 DLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRM 212
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 213 VKGEVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 272
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 273 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 332
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRVYPAI++ +SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 333 LHLSRKIAEKRVYPAIDITRSGTRKEELLTAPDELQKMWILRKIIHPM 380
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 167 VAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPA 226
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 227 SRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 286
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 287 PKRFFGAAR 295
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R K++++FAI K K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 13 LENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVS 72
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 73 PSQIRRFNLRTGDTVSGKIRPPKEGERYFALLKVNEVNYDRPENVRNKIL 122
>gi|398793317|ref|ZP_10553738.1| transcription termination factor Rho [Pantoea sp. YR343]
gi|398799796|ref|ZP_10559077.1| transcription termination factor Rho [Pantoea sp. GM01]
gi|398097341|gb|EJL87650.1| transcription termination factor Rho [Pantoea sp. GM01]
gi|398211023|gb|EJM97650.1| transcription termination factor Rho [Pantoea sp. YR343]
Length = 419
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH K + +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHASKRMRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNYPDCLLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNYPDCLLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|70733266|ref|YP_263039.1| transcription termination factor Rho [Pseudomonas protegens Pf-5]
gi|68347565|gb|AAY95171.1| transcription termination factor Rho [Pseudomonas protegens Pf-5]
Length = 419
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|319760698|ref|YP_004124636.1| transcription termination factor Rho [Candidatus Blochmannia vafer
str. BVAF]
gi|318039412|gb|ADV33962.1| transcription termination factor Rho [Candidatus Blochmannia vafer
str. BVAF]
Length = 419
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKTGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNDVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I+ N+ + ++IV+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSISHNYPDCVLIVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V GEVIASTFDEPA RHVQVAEMV+EKAKRLVE +KDVIILLDSITRLARAYNT++PASG
Sbjct: 223 VHGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHRKDVIILLDSITRLARAYNTIVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL D+LQKIW+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTHDELQKIWILRKIIHPM 390
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 141/283 (49%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ R+RKQ+++FAIFK+ K GE I FG D S PD
Sbjct: 23 LENLARMRKQDIIFAIFKQHAKTGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVS 82
Query: 434 RSQ---------------------GSNYMA---SSDDIYLSPSQIRR---FNLHTGILWK 466
SQ G Y A +D Y P R F T +
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNDVNYDKPENARSKILFENLTPLHAN 142
Query: 467 GEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSEA 514
+R+ + NG ++ + + VA PK+GK+++LQ+IA +I+ N+ +
Sbjct: 143 SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSISHNYPDC 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
++IV+LIDERPEEVTEMQR V GEVIASTFDEPA
Sbjct: 203 VLIVLLIDERPEEVTEMQRLVHGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHRKDVII 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT++PASGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTIVPASGKVLTGGVDANALHRPKRFFGAAR 305
>gi|294637931|ref|ZP_06716200.1| transcription termination factor Rho [Edwardsiella tarda ATCC
23685]
gi|291088957|gb|EFE21518.1| transcription termination factor Rho [Edwardsiella tarda ATCC
23685]
Length = 453
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 78 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 137
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 138 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 197
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 198 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 257
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 258 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 317
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 318 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 377
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 378 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTPEELQKMWILRKIIHPM 424
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 211 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 270
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 271 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 330
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 331 PKRFFGAAR 339
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 104/153 (67%), Gaps = 5/153 (3%)
Query: 351 MTSFTVSL-FFIKRTIPVEKNL--LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIF 407
+T FT+ + + P NL LK+ + ++ +++ LE ++ R+RKQ+++FAI
Sbjct: 16 VTPFTIQFEIYPEFKEPTTMNLTELKNTPVSELITLGESMGLE--NLARMRKQDIIFAIL 73
Query: 408 KKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKG 467
K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TG G
Sbjct: 74 KQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG 133
Query: 468 EIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 134 KIRPPKEGERYFALLKVNEVNYDKPENARSKIL 166
>gi|304414182|ref|ZP_07395550.1| transcription termination factor [Candidatus Regiella insecticola
LSR1]
gi|304283396|gb|EFL91792.1| transcription termination factor [Candidatus Regiella insecticola
LSR1]
Length = 460
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 301/347 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 85 KSGEDISGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 144
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLHP L +ER S E++T R++D
Sbjct: 145 PKEGERYFALLKVNEVNYDKPENSRNKILFENLTPLHPNSRLRMERGNGSTEDVTARVLD 204
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 205 LAAPIGRGQRGLIVAPPKAGKTMLLQNIATSIAHNHPDCVLMVLLIDERPEEVTEMQRLV 264
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 265 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 324
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGA RN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGN+E+
Sbjct: 325 VLTGGVDANALHRPKRFFGAGRNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNLEL 384
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK++ +
Sbjct: 385 HLSRKIAEKRVFPAIDYNRSGTRKEELLSTSDELQKMWILRKIIQPM 431
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 218 VAPPKAGKTMLLQNIATSIAHNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 277
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 278 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 337
Query: 582 PKRFFGAAR 590
PKRFFGA R
Sbjct: 338 PKRFFGAGR 346
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R RKQ+++F+I K+ K GE I GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 61 EMNLENLARTRKQDIIFSILKQHAKSGEDISGDGVLEILQDGFGFLRSGDSSYLAGPDDI 120
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 121 YVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNYDKPENSRNKIL 173
>gi|422015257|ref|ZP_16361857.1| transcription termination factor Rho [Providencia burhodogranariea
DSM 19968]
gi|414099575|gb|EKT61215.1| transcription termination factor Rho [Providencia burhodogranariea
DSM 19968]
Length = 419
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|421255124|ref|ZP_15709717.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. Anand1_buffalo]
gi|401691123|gb|EJS86165.1| transcription termination factor Rho [Pasteurella multocida subsp.
multocida str. Anand1_buffalo]
Length = 414
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/344 (71%), Positives = 301/344 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNYPECELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKL 345
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTSPDELQKMWILRKI 387
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/283 (49%), Positives = 170/283 (60%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+S
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFNL TG +G+IR PK GERYFALLK+ +VN
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHAN 143
Query: 489 ---------------------VASP-------------KSGKSIILQHIAHAITTNHSEA 514
+ASP K+GK+++LQ+IA +IT N+ E
Sbjct: 144 SRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITYNYPEC 203
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 204 ELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVI 263
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 264 LLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|440228917|ref|YP_007342710.1| transcription termination factor Rho [Serratia marcescens FGI94]
gi|440050622|gb|AGB80525.1| transcription termination factor Rho [Serratia marcescens FGI94]
Length = 419
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTSSEELQKMWILRKIIHPM 390
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|213583145|ref|ZP_03364971.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 385
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/342 (72%), Positives = 299/342 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRK 344
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRK 385
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENARNKIL 132
>gi|421618370|ref|ZP_16059347.1| transcription termination factor Rho [Pseudomonas stutzeri KOS6]
gi|409779701|gb|EKN59354.1| transcription termination factor Rho [Pseudomonas stutzeri KOS6]
Length = 419
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINYDRPENAKNKILFENLTPLFANQRLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGN+E+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL +D+LQ+IW+LRKLL+ +
Sbjct: 344 QLDRRIAEKRVFPAININRSGTRREELLTAEDELQRIWILRKLLHPM 390
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 86/122 (70%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L +AE ID ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS S
Sbjct: 15 LEMAEQMGID----NMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADS 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSINYDRPENAKNK 130
Query: 499 IL 500
IL
Sbjct: 131 IL 132
>gi|359456462|ref|ZP_09245619.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20495]
gi|414071120|ref|ZP_11407095.1| transcription termination factor Rho [Pseudoalteromonas sp.
Bsw20308]
gi|358046484|dbj|GAA81868.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20495]
gi|410806508|gb|EKS12499.1| transcription termination factor Rho [Pseudoalteromonas sp.
Bsw20308]
Length = 419
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/349 (70%), Positives = 305/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKGGENIFGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH + +ER SKE+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGLLVA PK+GK+++LQ+IA +IT NH +A ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLLVAPPKAGKTMLLQNIAQSITHNHPDATLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AE+RV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAERRVFPAIDFNRSGTRREELLTKPDELQKLWILRKIVHDMS 391
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH +A ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITHNHPDATLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ + +++ LE +V RLRKQ+++FAI K K GE IFG G LE+L DGFG
Sbjct: 6 LKDKSIKELVNQAESMGLE--NVARLRKQDIIFAILKSHAKGGENIFGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|381160673|ref|ZP_09869905.1| transcription termination factor Rho [Thiorhodovibrio sp. 970]
gi|380878737|gb|EIC20829.1| transcription termination factor Rho [Thiorhodovibrio sp. 970]
Length = 418
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/349 (70%), Positives = 304/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD + G+I
Sbjct: 42 QAKRGEDISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GERYFALLK+ +N ++PEL+KN+ LF+N TPL P+K L LE S E+IT RI
Sbjct: 102 RPPKEGERYFALLKVSDINFDRPELAKNKILFENFTPLFPQKRLGLEIGNGSTEDITARI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIG+GQRGL+V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDLVAPIGRGQRGLIVSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMAR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHNRDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR++EKR++PAI++N+SGTRREELL+ +LQK+W+LRK+L+ +
Sbjct: 342 EIHLDRRISEKRIFPAIHINRSGTRREELLMAQAELQKMWILRKILHPM 390
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 168/302 (55%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++ Q+ +E+ V R RKQ+L+F+I K + K GE I GDG LE+L DGFG
Sbjct: 6 LKKMPIPGLVELAQS--MEIEGVGRSRKQDLIFSILKVQAKRGEDISGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNG---------------- 475
FLRS ++Y+A DDIY+SPSQIRRF L TG G+IR PK G
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKEGERYFALLKVSDINFDR 123
Query: 476 ----------ERYFALLKIKKVN------------------------------VASPKSG 495
E + L K++ V+ PK+G
Sbjct: 124 PELAKNKILFENFTPLFPQKRLGLEIGNGSTEDITARIIDLVAPIGRGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH + +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 184 KTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHNRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|422652484|ref|ZP_16715267.1| transcription termination factor Rho [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330965550|gb|EGH65810.1| transcription termination factor Rho [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 415
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/348 (72%), Positives = 302/348 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTIRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL T
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLTRWT 391
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ K+ K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKRHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|422403115|ref|ZP_16480174.1| transcription termination factor Rho, partial [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330872821|gb|EGH06970.1| transcription termination factor Rho [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 413
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTIRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ K+ K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKRHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|350552258|ref|ZP_08921463.1| transcription termination factor Rho [Thiorhodospira sibirica ATCC
700588]
gi|349794911|gb|EGZ48719.1| transcription termination factor Rho [Thiorhodospira sibirica ATCC
700588]
Length = 419
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDICGDGVLEILQDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ K+N E PE ++++ LF+NLTPLH + + +ER S E+IT R+I
Sbjct: 103 PPKEGERYFALLKVDKINFESPENARSKVLFENLTPLHATERMRMERGNGSTEDITARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP GKGQRGL+V+ PK+GK+++LQ+IA +I TN+ E ++V+LIDERPEEVTEM R
Sbjct: 163 DIVAPFGKGQRGLIVSPPKAGKTLMLQNIAQSIATNYPECYLMVLLIDERPEEVTEMSRM 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVI+STFDEPA RHVQVAEMV+EKAKRLVE ++DV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VQGEVISSTFDEPASRHVQVAEMVIEKAKRLVEHRRDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL+RR+AEKRVYPAIN+N+SGTRREELL ++LQK+W+LRK L+ +
Sbjct: 343 IHLDRRIAEKRVYPAININRSGTRREELLADQEELQKLWILRKFLHPM 390
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 141/290 (48%), Gaps = 85/290 (29%)
Query: 384 TQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSLEVL 426
Q +D+E + R RKQ+++FAI K K GE I G DGS
Sbjct: 18 AQAMDIE--GMARARKQDVIFAILKAHAKSGEDICGDGVLEILQDGFGFLRSADGSYLAG 75
Query: 427 PDGFGFLRSQ---------------------GSNYMA--SSDDI-YLSPSQIRR---FNL 459
PD SQ G Y A D I + SP R F
Sbjct: 76 PDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVDKINFESPENARSKVLFEN 135
Query: 460 HTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAI 507
T + +R+ + NG ++ + + V+ PK+GK+++LQ+IA +I
Sbjct: 136 LTPLHATERMRMERGNGSTEDITARVIDIVAPFGKGQRGLIVSPPKAGKTLMLQNIAQSI 195
Query: 508 TTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------- 548
TN+ E ++V+LIDERPEEVTEM R V+GEVI+STFDEPA
Sbjct: 196 ATNYPECYLMVLLIDERPEEVTEMSRMVQGEVISSTFDEPASRHVQVAEMVIEKAKRLVE 255
Query: 549 --------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 256 HRRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|253991616|ref|YP_003042972.1| transcription termination factor [Photorhabdus asymbiotica]
gi|253783066|emb|CAQ86231.1| transcription termination factor [Photorhabdus asymbiotica]
Length = 419
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARSKIL 132
>gi|384417613|ref|YP_005626973.1| transcription termination factor Rho [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|353460527|gb|AEQ94806.1| transcription termination factor Rho [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 629
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 298/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 254 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 313
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SK + LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 314 FPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 373
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 374 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 433
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 434 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 493
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 494 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 553
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 554 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 601
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 237 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 296
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 297 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRF 356
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 357 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 416
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 417 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 476
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 477 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 516
>gi|374705238|ref|ZP_09712108.1| transcription termination factor Rho [Pseudomonas sp. S9]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/348 (72%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD + G+ R
Sbjct: 43 SKGGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLHTGDTIVGKNR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P K L++E S E+ITGR+I
Sbjct: 103 PPKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPNKRLVMEAGNGSTEDITGRVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D APIGKGQRG +VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+
Sbjct: 163 DFCAPIGKGQRGPIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTG ME
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGKME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+ L+RR+AEKRV+PAIN+N+SGTRREELL +D+LQ+IW+LRKLL+ +
Sbjct: 343 LPLDRRIAEKRVFPAININRSGTRREELLTAEDELQRIWILRKLLHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 87/122 (71%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L +AE ID ++ R RKQ+++F++ K+ +K GE I GDG LE+L DGFGFLRS +
Sbjct: 15 LEMAEQMGID----NMARSRKQDVIFSLLKRHSKGGEEISGDGVLEILQDGFGFLRSADA 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y+A DDIY+SPSQIRRFNLHTG G+ R PK GERYFALLK+ +N P++ K+
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLHTGDTIVGKNRPPKEGERYFALLKVDTINYDRPENAKNK 130
Query: 499 IL 500
IL
Sbjct: 131 IL 132
>gi|374314397|ref|YP_005060826.1| transcription termination factor [Serratia symbiotica str. 'Cinara
cedri']
gi|363988623|gb|AEW44814.1| transcription termination factor [Serratia symbiotica str. 'Cinara
cedri']
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 305/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKDGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ ++
Sbjct: 343 LHLARKIAEKRVFPAIDYNRSGTRKEELLSTAEELQKMWILRKIIHPMS 391
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ + I LE ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSDLITLGENIGLE--NLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ +S IL
Sbjct: 124 PENARSKIL 132
>gi|28872354|ref|NP_794973.1| transcription termination factor Rho [Pseudomonas syringae pv.
tomato str. DC3000]
gi|66043571|ref|YP_233412.1| transcription termination factor Rho [Pseudomonas syringae pv.
syringae B728a]
gi|71734599|ref|YP_272593.1| transcription termination factor Rho [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|213971839|ref|ZP_03399941.1| transcription termination factor Rho [Pseudomonas syringae pv.
tomato T1]
gi|237797987|ref|ZP_04586448.1| transcription termination factor Rho [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|257481843|ref|ZP_05635884.1| transcription termination factor Rho [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|289624462|ref|ZP_06457416.1| transcription termination factor Rho [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289651577|ref|ZP_06482920.1| transcription termination factor Rho [Pseudomonas syringae pv.
aesculi str. 2250]
gi|289674521|ref|ZP_06495411.1| transcription termination factor Rho [Pseudomonas syringae pv.
syringae FF5]
gi|301383376|ref|ZP_07231794.1| transcription termination factor Rho [Pseudomonas syringae pv.
tomato Max13]
gi|302064069|ref|ZP_07255610.1| transcription termination factor Rho [Pseudomonas syringae pv.
tomato K40]
gi|302134963|ref|ZP_07260953.1| transcription termination factor Rho [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|302186813|ref|ZP_07263486.1| transcription termination factor Rho [Pseudomonas syringae pv.
syringae 642]
gi|416019339|ref|ZP_11566232.1| transcription termination factor Rho [Pseudomonas syringae pv.
glycinea str. B076]
gi|416022203|ref|ZP_11567443.1| transcription termination factor Rho [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422300605|ref|ZP_16388119.1| transcription termination factor Rho [Pseudomonas avellanae BPIC
631]
gi|422581764|ref|ZP_16656905.1| transcription termination factor Rho [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|422587974|ref|ZP_16662643.1| transcription termination factor Rho [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422596482|ref|ZP_16670763.1| transcription termination factor Rho [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422603649|ref|ZP_16675667.1| transcription termination factor Rho [Pseudomonas syringae pv. mori
str. 301020]
gi|422629657|ref|ZP_16694860.1| transcription termination factor Rho [Pseudomonas syringae pv. pisi
str. 1704B]
gi|422659236|ref|ZP_16721663.1| transcription termination factor Rho [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|422666729|ref|ZP_16726596.1| transcription termination factor Rho [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|422674111|ref|ZP_16733467.1| transcription termination factor Rho [Pseudomonas syringae pv.
aceris str. M302273]
gi|422680132|ref|ZP_16738404.1| transcription termination factor Rho [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|424065503|ref|ZP_17802978.1| transcription termination factor Rho [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|424070188|ref|ZP_17807624.1| transcription termination factor Rho [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|440723228|ref|ZP_20903594.1| transcription termination factor Rho [Pseudomonas syringae
BRIP34876]
gi|440728307|ref|ZP_20908525.1| transcription termination factor Rho [Pseudomonas syringae
BRIP34881]
gi|440743156|ref|ZP_20922471.1| transcription termination factor Rho [Pseudomonas syringae
BRIP39023]
gi|443641039|ref|ZP_21124889.1| Transcription termination factor Rho [Pseudomonas syringae pv.
syringae B64]
gi|28855609|gb|AAO58668.1| transcription termination factor Rho [Pseudomonas syringae pv.
tomato str. DC3000]
gi|63254278|gb|AAY35374.1| transcription termination factor Rho [Pseudomonas syringae pv.
syringae B728a]
gi|71555152|gb|AAZ34363.1| transcription termination factor Rho [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|213923385|gb|EEB56978.1| transcription termination factor Rho [Pseudomonas syringae pv.
tomato T1]
gi|298160292|gb|EFI01319.1| Transcription termination factor Rho [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322167|gb|EFW78263.1| transcription termination factor Rho [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331818|gb|EFW87756.1| transcription termination factor Rho [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330866612|gb|EGH01321.1| transcription termination factor Rho [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330874078|gb|EGH08227.1| transcription termination factor Rho [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330886069|gb|EGH19970.1| transcription termination factor Rho [Pseudomonas syringae pv. mori
str. 301020]
gi|330938789|gb|EGH42317.1| transcription termination factor Rho [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330971841|gb|EGH71907.1| transcription termination factor Rho [Pseudomonas syringae pv.
aceris str. M302273]
gi|330977252|gb|EGH77208.1| transcription termination factor Rho [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330986780|gb|EGH84883.1| transcription termination factor Rho [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009478|gb|EGH89534.1| transcription termination factor Rho [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|331017856|gb|EGH97912.1| transcription termination factor Rho [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331020838|gb|EGI00895.1| transcription termination factor Rho [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|407987165|gb|EKG30033.1| transcription termination factor Rho [Pseudomonas avellanae BPIC
631]
gi|408001098|gb|EKG41424.1| transcription termination factor Rho [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|408003285|gb|EKG43480.1| transcription termination factor Rho [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|440359850|gb|ELP97139.1| transcription termination factor Rho [Pseudomonas syringae
BRIP34876]
gi|440362170|gb|ELP99379.1| transcription termination factor Rho [Pseudomonas syringae
BRIP34881]
gi|440376004|gb|ELQ12691.1| transcription termination factor Rho [Pseudomonas syringae
BRIP39023]
gi|443281056|gb|ELS40061.1| Transcription termination factor Rho [Pseudomonas syringae pv.
syringae B64]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTIRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ K+ K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKRHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|113460319|ref|YP_718380.1| transcription termination factor Rho [Haemophilus somnus 129PT]
gi|112822362|gb|ABI24451.1| transcription termination factor Rho [Haemophilus somnus 129PT]
Length = 399
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 23 AKSGEDIFGGGILEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 82
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 83 PPKEGERYFALLKVDRVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 142
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 143 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIIHNYPECELIVLLIDERPEEVTEMQRS 202
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 203 VKGEVIASTFDEPAARHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 262
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 263 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 322
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 323 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 367
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 142/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 3 LENLARLRKQDIIFAILKQHAKSGEDIFGGGILEILPDGFGFLRSADSSYLAGPDDIYVS 62
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 63 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDRVNDDKPEVSRSKILFENL-TPLHA 121
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +I N+ E
Sbjct: 122 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIIHNYPE 181
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 182 CELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPAARHVQVAEMVIEKAKRSVEHKKDVV 241
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 242 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 285
>gi|359432178|ref|ZP_09222571.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20652]
gi|357921270|dbj|GAA58820.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20652]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/349 (70%), Positives = 305/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKGGENIFGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH + +ER SKE+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGLLVA PK+GK+++LQ+IA +IT NH +A ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLLVAPPKAGKTMLLQNIAQSITHNHPDATLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AE+RV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAERRVFPAIDFNRSGTRREELLTKPDELQKLWILRKIVHDMS 391
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH +A ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITHNHPDATLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++FAI K K GE IFG G LE+L DGFG
Sbjct: 6 LKDKSIKELVNLAESMGLE--NVARLRKQDIIFAILKSHAKGGENIFGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|37528480|ref|NP_931825.1| transcription termination factor Rho [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787918|emb|CAE17035.1| transcription termination factor [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARSKIL 132
>gi|77359089|ref|YP_338664.1| transcription termination factor Rho [Pseudoalteromonas
haloplanktis TAC125]
gi|76874000|emb|CAI85221.1| transcription termination factor Rho; polarity suppressor
[Pseudoalteromonas haloplanktis TAC125]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/349 (70%), Positives = 305/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKGGENIFGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH + +ER SKE+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGLLVA PK+GK+++LQ+IA +IT NH +A ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLLVAPPKAGKTMLLQNIAQSITHNHPDATLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AE+RV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAERRVFPAIDFNRSGTRREELLTKPDELQKLWILRKIVHDMS 391
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH +A ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITHNHPDATLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++FAI K K GE IFG G LE+L DGFG
Sbjct: 6 LKDKSIKELVDLAESMGLE--NVARLRKQDIIFAILKSHAKGGENIFGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|88861238|ref|ZP_01135870.1| transcription termination factor Rho; polarity suppressor
[Pseudoalteromonas tunicata D2]
gi|88816719|gb|EAR26542.1| transcription termination factor Rho; polarity suppressor
[Pseudoalteromonas tunicata D2]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 304/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF+L TGD + G IR
Sbjct: 43 SKSGENIFGLGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE S+N+ LF+NLTPLH + L +ER S E+IT R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDRPESSRNKILFENLTPLHANERLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT NH E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNHPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTRREELL + D++QK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKPDEIQKMWILRKIVHDM 390
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITHNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 82/110 (74%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ +V RLRKQ+++FAI K +K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 LENVARLRKQDIIFAILKAHSKSGENIFGLGVLEILQDGFGFLRSSEASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRF+L TG G IR PK GERYFALLK+ +VN P+S ++ IL
Sbjct: 83 PSQIRRFSLRTGDSISGLIRPPKEGERYFALLKVNEVNFDRPESSRNKIL 132
>gi|398878253|ref|ZP_10633378.1| transcription termination factor Rho [Pseudomonas sp. GM67]
gi|398881523|ref|ZP_10636512.1| transcription termination factor Rho [Pseudomonas sp. GM60]
gi|398939659|ref|ZP_10668752.1| transcription termination factor Rho [Pseudomonas sp. GM41(2012)]
gi|398992614|ref|ZP_10695578.1| transcription termination factor Rho [Pseudomonas sp. GM21]
gi|407367219|ref|ZP_11113751.1| transcription termination factor Rho [Pseudomonas mandelii JR-1]
gi|398136623|gb|EJM25704.1| transcription termination factor Rho [Pseudomonas sp. GM21]
gi|398163981|gb|EJM52130.1| transcription termination factor Rho [Pseudomonas sp. GM41(2012)]
gi|398200510|gb|EJM87421.1| transcription termination factor Rho [Pseudomonas sp. GM67]
gi|398201162|gb|EJM88049.1| transcription termination factor Rho [Pseudomonas sp. GM60]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|395495536|ref|ZP_10427115.1| transcription termination factor Rho [Pseudomonas sp. PAMC 25886]
gi|395799405|ref|ZP_10478686.1| transcription termination factor Rho [Pseudomonas sp. Ag1]
gi|395336509|gb|EJF68369.1| transcription termination factor Rho [Pseudomonas sp. Ag1]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|261345268|ref|ZP_05972912.1| transcription termination factor Rho [Providencia rustigianii DSM
4541]
gi|282566966|gb|EFB72501.1| transcription termination factor Rho [Providencia rustigianii DSM
4541]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANNRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQDELQKMWILRKIIHPM 390
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|56461461|ref|YP_156742.1| transcription termination factor Rho [Idiomarina loihiensis L2TR]
gi|56180471|gb|AAV83193.1| Transcription termination factor rho [Idiomarina loihiensis L2TR]
Length = 422
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/348 (72%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I G G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIHGGGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIGGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI++VN +KPE S+N+ LF+NLTPLH ++ LER SKE+IT R++
Sbjct: 103 PPKDSERYFALLKIREVNFDKPENSRNKILFENLTPLHAEERFHLERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I NH +A +IV+LIDERPEEVTEM R
Sbjct: 163 DLSAPIGKGQRGLIVAPPKAGKTLLLQNIATSIAANHPDAELIVLLIDERPEEVTEMHRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VHGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R+LAE+RV+PAI+ N+SGTRREELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKLAERRVFPAIDFNRSGTRREELLTTPDELQKMWILRKIMHPM 390
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 157/304 (51%), Gaps = 89/304 (29%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ ++ LE ++ RLRKQ+++FAI K K GE I G G LE+L DGFG
Sbjct: 6 LKDKPVNELVQLADSMGLE--NMARLRKQDIIFAILKAHAKSGEDIHGGGVLEILQDGFG 63
Query: 432 FLRSQGSN--------YMASS----------DDI------------YLSPSQIRRFNL-- 459
FLRS S+ Y++ S D I Y + +IR N
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIGGKIRPPKDSERYFALLKIREVNFDK 123
Query: 460 ----HTGILWKGEIRVPKNGERYFALLK----------------------IKKVNVASPK 493
IL+ E P + E F L + + + VA PK
Sbjct: 124 PENSRNKILF--ENLTPLHAEERFHLERGNGSKEDITARVLDLSAPIGKGQRGLIVAPPK 181
Query: 494 SGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----- 548
+GK+++LQ+IA +I NH +A +IV+LIDERPEEVTEM R V GEV+ASTFDEPA
Sbjct: 182 AGKTLLLQNIATSIAANHPDAELIVLLIDERPEEVTEMHRLVHGEVVASTFDEPASRHVQ 241
Query: 549 ----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFF 586
L + +LARAYNTVIP+SGKVLTGGVD+NAL +PKRFF
Sbjct: 242 VAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFF 301
Query: 587 GAAR 590
GAAR
Sbjct: 302 GAAR 305
>gi|350425992|ref|XP_003494298.1| PREDICTED: transcription termination factor Rho-like [Bombus
impatiens]
Length = 420
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 AKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 104 PPKEGERYFALLKVNEVNHDKPEDARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I N+ E ++V+LIDERPEEVTEMQR
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAFNYPECELMVLLIDERPEEVTEMQRL 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 224 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 284 KILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+ L R++AEKRV+PAI+ N+SGTR+EEL+ D+LQK+W+LRK+L+ +
Sbjct: 344 LQLSRKIAEKRVFPAIDFNRSGTRKEELMTSPDELQKMWILRKILHPM 391
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 141/295 (47%), Positives = 175/295 (59%), Gaps = 85/295 (28%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
LV+ +T+ LE ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S
Sbjct: 14 LVILGEKTMGLE--NLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSSDS 71
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------- 488
+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 72 SYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNHDKPEDARNK 131
Query: 489 ---------------------------------VASP-------------KSGKSIILQH 502
+ASP K+GK+++LQ+
Sbjct: 132 ILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGKGQRGLIVAPPKAGKTMLLQN 191
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IA +I N+ E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 192 IAQSIAFNYPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKA 251
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 252 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGAAR 306
>gi|392553756|ref|ZP_10300893.1| transcription termination factor Rho [Pseudoalteromonas spongiae
UST010723-006]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/349 (71%), Positives = 304/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+G G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF+L TGD + G IR
Sbjct: 43 AKSGENIYGGGVLEILQDGFGFLRSFEASYLAGPDDIYVSPSQIRRFSLRTGDTINGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH L +ER S E+IT R+I
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANDRLRMERGNGSTEDITTRVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGLLVA PK+GK+++LQ+IA +I++NH E +IV+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGKGQRGLLVAPPKAGKTMLLQNIAQSISSNHPECELIVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+E+GGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEQGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKADELQKMWILRKIVHEMS 391
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I++NH E +IV+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSISSNHPECELIVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE +V RLRKQ+++FAI K K GE I+G G LE+L DGFG
Sbjct: 6 LKNKSINELVKLAESMGLE--NVGRLRKQDIIFAILKAHAKSGENIYGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF+L TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSFEASYLAGPDDIYVSPSQIRRFSLRTGDTINGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|330812504|ref|YP_004356966.1| Rho transcription termination factor [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|398869382|ref|ZP_10624754.1| transcription termination factor Rho [Pseudomonas sp. GM78]
gi|398871240|ref|ZP_10626556.1| transcription termination factor Rho [Pseudomonas sp. GM74]
gi|398887634|ref|ZP_10642293.1| transcription termination factor Rho [Pseudomonas sp. GM55]
gi|398916276|ref|ZP_10657681.1| transcription termination factor Rho [Pseudomonas sp. GM49]
gi|398924447|ref|ZP_10661209.1| transcription termination factor Rho [Pseudomonas sp. GM48]
gi|398957634|ref|ZP_10677357.1| transcription termination factor Rho [Pseudomonas sp. GM33]
gi|423700004|ref|ZP_17674494.1| transcription termination factor Rho [Pseudomonas fluorescens
Q8r1-96]
gi|426412144|ref|YP_007032243.1| transcription termination factor Rho [Pseudomonas sp. UW4]
gi|327380612|gb|AEA71962.1| putative Rho transcription termination factor [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387997101|gb|EIK58431.1| transcription termination factor Rho [Pseudomonas fluorescens
Q8r1-96]
gi|398147941|gb|EJM36634.1| transcription termination factor Rho [Pseudomonas sp. GM33]
gi|398173323|gb|EJM61160.1| transcription termination factor Rho [Pseudomonas sp. GM48]
gi|398175092|gb|EJM62861.1| transcription termination factor Rho [Pseudomonas sp. GM49]
gi|398192102|gb|EJM79271.1| transcription termination factor Rho [Pseudomonas sp. GM55]
gi|398206495|gb|EJM93258.1| transcription termination factor Rho [Pseudomonas sp. GM74]
gi|398230533|gb|EJN16555.1| transcription termination factor Rho [Pseudomonas sp. GM78]
gi|426270361|gb|AFY22438.1| transcription termination factor Rho [Pseudomonas sp. UW4]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|325920135|ref|ZP_08182099.1| transcription termination factor Rho [Xanthomonas gardneri ATCC
19865]
gi|325549386|gb|EGD20276.1| transcription termination factor Rho [Xanthomonas gardneri ATCC
19865]
Length = 426
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AIT+NH E MIV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITSNHPEVHMIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 351 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 398
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 34 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 93
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 94 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRF 153
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AIT+NH E MI
Sbjct: 154 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITSNHPEVHMI 213
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 214 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 273
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 274 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 313
>gi|378953556|ref|YP_005211044.1| hypothetical protein PSF113_5677 [Pseudomonas fluorescens F113]
gi|423093026|ref|ZP_17080822.1| transcription termination factor Rho [Pseudomonas fluorescens
Q2-87]
gi|359763570|gb|AEV65649.1| Rho [Pseudomonas fluorescens F113]
gi|397882712|gb|EJK99199.1| transcription termination factor Rho [Pseudomonas fluorescens
Q2-87]
Length = 419
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|372276850|ref|ZP_09512886.1| transcription termination factor Rho [Pantoea sp. SL1_M5]
gi|390436558|ref|ZP_10225096.1| transcription termination factor Rho [Pantoea agglomerans IG1]
Length = 419
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH K L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANKRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA ++ N+ + ++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSLAHNYPDCTLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTSQEELQKMWILRKIIHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA ++ N+ + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSLAHNYPDCTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIR
Sbjct: 28 RMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|254449287|ref|ZP_05062733.1| transcription termination factor Rho [gamma proteobacterium
HTCC5015]
gi|198261096|gb|EDY85395.1| transcription termination factor Rho [gamma proteobacterium
HTCC5015]
Length = 418
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGEDIFGDGVLEILPDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLK+ ++N + PE +K + LF+NLT LH + + LER S E+IT R+I
Sbjct: 103 PPKDSERYFALLKVDEINYDTPENAKRKILFENLTALHAEDRIRLERGNGSSEDITSRVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP GKGQRGLLVA PK+GK+++LQ++A ++ N+ + +IV+LIDERPEEVTEMQR
Sbjct: 163 DIVAPFGKGQRGLLVAPPKAGKTVMLQNMAQSVMVNNPDVYLIVLLIDERPEEVTEMQRM 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV P+SG
Sbjct: 223 VRGEVISSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVAPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL+RR+AEKRV+PAIN+N+SGTRREELL+ ++ QKIW+LRK L+S+
Sbjct: 343 IHLDRRIAEKRVFPAININRSGTRREELLMDAEEQQKIWILRKFLHSM 390
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 133/296 (44%), Positives = 171/296 (57%), Gaps = 83/296 (28%)
Query: 378 PLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQG 437
P+ Q + ++++ R RKQ+++FA+ KK K GE IFGDG LE+LPDGFGFLRS
Sbjct: 10 PIAELTEQAQSMGMDNLGRSRKQDIIFAMLKKHAKGGEDIFGDGVLEILPDGFGFLRSGD 69
Query: 438 SNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK- 496
S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+ ERYFALLK+ ++N +P++ K
Sbjct: 70 SSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDSERYFALLKVDEINYDTPENAKR 129
Query: 497 SIILQHIA--HA---------------ITT------------------------------ 509
I+ +++ HA IT+
Sbjct: 130 KILFENLTALHAEDRIRLERGNGSSEDITSRVIDIVAPFGKGQRGLLVAPPKAGKTVMLQ 189
Query: 510 NHSEAIM--------IVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------- 548
N ++++M IV+LIDERPEEVTEMQR VRGEVI+STFDEPA
Sbjct: 190 NMAQSVMVNNPDVYLIVLLIDERPEEVTEMQRMVRGEVISSTFDEPASRHVQVAEMVIEK 249
Query: 549 --------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P+SGKVLTGGVD++AL RPKRFFGAAR
Sbjct: 250 AKRLVEHKRDVVILLDSITRLARAYNTVAPSSGKVLTGGVDAHALHRPKRFFGAAR 305
>gi|387131352|ref|YP_006294242.1| transcription termination factor Rho [Methylophaga sp. JAM7]
gi|386272641|gb|AFJ03555.1| Transcription termination factor Rho [Methylophaga sp. JAM7]
Length = 419
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 300/347 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE +F G LE+LPDGFGFLRS +Y+A DD+Y+SPSQIRRF+L TGD ++G+IR
Sbjct: 44 KQGEDVFTTGVLELLPDGFGFLRSPEDSYVAGPDDVYVSPSQIRRFHLRTGDTIKGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+K++++N EKPE S+N+ F+NLTPL P + LER S E++T RIID
Sbjct: 104 PKDSERYFALVKVEEINYEKPEKSRNKVPFENLTPLFPNERFSLERGNGSTEDLTARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PKSGK++ILQ +A +IT N+ E+ +IV+LIDERPEEVTEMQRSV
Sbjct: 164 LAAPIGKGQRGLIVAPPKSGKTMILQAVAQSITANYPESDLIVLLIDERPEEVTEMQRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV P+SGK
Sbjct: 224 RGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVAPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGNME
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMEA 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LER+LA++R+YPAIN+ +SGTRREELL +D LQK+W+LRKLL +
Sbjct: 344 LLERKLADRRMYPAINVTRSGTRREELLTSEDDLQKLWILRKLLAPM 390
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++ILQ +A +IT N+ E+ +IV+LIDERPEEVTEMQRSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTMILQAVAQSITANYPESDLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVAPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 81/113 (71%)
Query: 387 IDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDD 446
+ + + + R RKQEL+FA+ K K GE +F G LE+LPDGFGFLRS +Y+A DD
Sbjct: 19 LSMNLEGLARNRKQELIFALVKAHAKQGEDVFTTGVLELLPDGFGFLRSPEDSYVAGPDD 78
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
+Y+SPSQIRRF+L TG KG+IR PK+ ERYFAL+K++++N P+ ++ +
Sbjct: 79 VYVSPSQIRRFHLRTGDTIKGKIRPPKDSERYFALVKVEEINYEKPEKSRNKV 131
>gi|15600432|ref|NP_253926.1| transcription termination factor Rho [Pseudomonas aeruginosa PAO1]
gi|107104341|ref|ZP_01368259.1| hypothetical protein PaerPA_01005416 [Pseudomonas aeruginosa PACS2]
gi|116053386|ref|YP_793711.1| transcription termination factor Rho [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152988902|ref|YP_001351298.1| transcription termination factor Rho [Pseudomonas aeruginosa PA7]
gi|218894341|ref|YP_002443211.1| transcription termination factor Rho [Pseudomonas aeruginosa
LESB58]
gi|254238064|ref|ZP_04931387.1| transcription termination factor Rho [Pseudomonas aeruginosa C3719]
gi|254243879|ref|ZP_04937201.1| transcription termination factor Rho [Pseudomonas aeruginosa 2192]
gi|296392097|ref|ZP_06881572.1| transcription termination factor Rho [Pseudomonas aeruginosa PAb1]
gi|313110308|ref|ZP_07796200.1| transcription termination factor Rho [Pseudomonas aeruginosa 39016]
gi|355643525|ref|ZP_09053376.1| transcription termination factor Rho [Pseudomonas sp. 2_1_26]
gi|386061415|ref|YP_005977937.1| transcription termination factor Rho [Pseudomonas aeruginosa M18]
gi|386068891|ref|YP_005984195.1| transcription termination factor [Pseudomonas aeruginosa NCGM2.S1]
gi|392986920|ref|YP_006485507.1| transcription termination factor Rho [Pseudomonas aeruginosa DK2]
gi|416855401|ref|ZP_11911494.1| transcription termination factor Rho [Pseudomonas aeruginosa
138244]
gi|416855895|ref|ZP_11911737.1| transcription termination factor Rho [Pseudomonas aeruginosa
138244]
gi|416880702|ref|ZP_11921372.1| transcription termination factor Rho [Pseudomonas aeruginosa
152504]
gi|418586563|ref|ZP_13150604.1| transcription termination factor Rho [Pseudomonas aeruginosa
MPAO1/P1]
gi|418589897|ref|ZP_13153815.1| transcription termination factor Rho [Pseudomonas aeruginosa
MPAO1/P2]
gi|419756303|ref|ZP_14282654.1| transcription termination factor Rho [Pseudomonas aeruginosa
PADK2_CF510]
gi|420140414|ref|ZP_14648175.1| transcription termination factor Rho [Pseudomonas aeruginosa CIG1]
gi|421156772|ref|ZP_15616211.1| transcription termination factor Rho [Pseudomonas aeruginosa ATCC
14886]
gi|421171128|ref|ZP_15629015.1| transcription termination factor Rho [Pseudomonas aeruginosa ATCC
700888]
gi|421177501|ref|ZP_15635152.1| transcription termination factor Rho [Pseudomonas aeruginosa CI27]
gi|421183327|ref|ZP_15640788.1| transcription termination factor Rho [Pseudomonas aeruginosa E2]
gi|421519809|ref|ZP_15966480.1| transcription termination factor Rho [Pseudomonas aeruginosa
PAO579]
gi|424943960|ref|ZP_18359723.1| transcription termination factor Rho [Pseudomonas aeruginosa
NCMG1179]
gi|451986999|ref|ZP_21935161.1| Transcription termination factor Rho [Pseudomonas aeruginosa 18A]
gi|452876777|ref|ZP_21954114.1| transcription termination factor Rho [Pseudomonas aeruginosa
VRFPA01]
gi|81856927|sp|Q9HTV1.1|RHO_PSEAE RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|9951548|gb|AAG08624.1|AE004936_7 transcription termination factor Rho [Pseudomonas aeruginosa PAO1]
gi|115588607|gb|ABJ14622.1| transcription termination factor Rho [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169995|gb|EAZ55506.1| transcription termination factor Rho [Pseudomonas aeruginosa C3719]
gi|126197257|gb|EAZ61320.1| transcription termination factor Rho [Pseudomonas aeruginosa 2192]
gi|150964060|gb|ABR86085.1| transcription termination factor Rho [Pseudomonas aeruginosa PA7]
gi|218774570|emb|CAW30387.1| transcription termination factor Rho [Pseudomonas aeruginosa
LESB58]
gi|310882702|gb|EFQ41296.1| transcription termination factor Rho [Pseudomonas aeruginosa 39016]
gi|334836259|gb|EGM15081.1| transcription termination factor Rho [Pseudomonas aeruginosa
152504]
gi|334842565|gb|EGM21170.1| transcription termination factor Rho [Pseudomonas aeruginosa
138244]
gi|334842979|gb|EGM21576.1| transcription termination factor Rho [Pseudomonas aeruginosa
138244]
gi|346060406|dbj|GAA20289.1| transcription termination factor Rho [Pseudomonas aeruginosa
NCMG1179]
gi|347307721|gb|AEO77835.1| transcription termination factor Rho [Pseudomonas aeruginosa M18]
gi|348037450|dbj|BAK92810.1| transcription termination factor [Pseudomonas aeruginosa NCGM2.S1]
gi|354829729|gb|EHF13792.1| transcription termination factor Rho [Pseudomonas sp. 2_1_26]
gi|375042928|gb|EHS35564.1| transcription termination factor Rho [Pseudomonas aeruginosa
MPAO1/P1]
gi|375051235|gb|EHS43705.1| transcription termination factor Rho [Pseudomonas aeruginosa
MPAO1/P2]
gi|384397388|gb|EIE43800.1| transcription termination factor Rho [Pseudomonas aeruginosa
PADK2_CF510]
gi|392322425|gb|AFM67805.1| transcription termination factor Rho [Pseudomonas aeruginosa DK2]
gi|403246813|gb|EJY60508.1| transcription termination factor Rho [Pseudomonas aeruginosa CIG1]
gi|404345728|gb|EJZ72080.1| transcription termination factor Rho [Pseudomonas aeruginosa
PAO579]
gi|404518704|gb|EKA29522.1| transcription termination factor Rho [Pseudomonas aeruginosa ATCC
14886]
gi|404521183|gb|EKA31803.1| transcription termination factor Rho [Pseudomonas aeruginosa ATCC
700888]
gi|404529412|gb|EKA39452.1| transcription termination factor Rho [Pseudomonas aeruginosa CI27]
gi|404540446|gb|EKA49853.1| transcription termination factor Rho [Pseudomonas aeruginosa E2]
gi|451755314|emb|CCQ87684.1| Transcription termination factor Rho [Pseudomonas aeruginosa 18A]
gi|452186434|gb|EME13452.1| transcription termination factor Rho [Pseudomonas aeruginosa
VRFPA01]
gi|453046753|gb|EME94469.1| transcription termination factor Rho [Pseudomonas aeruginosa
PA21_ST175]
Length = 419
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNERMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL +D+LQ++W+LRK+L+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTSEDELQRMWILRKILHPM 390
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>gi|392557179|ref|ZP_10304316.1| transcription termination factor Rho [Pseudoalteromonas undina
NCIMB 2128]
Length = 419
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/349 (70%), Positives = 304/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKGGENIFGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH + +ER SKE+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGLLVA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLLVAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKPDELQKLWILRKIVHDMS 391
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ + +++ LE +V RLRKQ+++FAI K K GE IFG G LE+L DGFG
Sbjct: 6 LKDKSIKELVNQAESMGLE--NVARLRKQDIIFAILKSHAKGGENIFGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|268592934|ref|ZP_06127155.1| transcription termination factor Rho [Providencia rettgeri DSM
1131]
gi|422007088|ref|ZP_16354074.1| transcription termination factor Rho [Providencia rettgeri Dmel1]
gi|291311726|gb|EFE52179.1| transcription termination factor Rho [Providencia rettgeri DSM
1131]
gi|414096978|gb|EKT58633.1| transcription termination factor Rho [Providencia rettgeri Dmel1]
Length = 419
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH + L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANRRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQDELQKMWILRKIIHPM 390
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|431931418|ref|YP_007244464.1| transcription termination factor Rho [Thioflavicoccus mobilis 8321]
gi|431829721|gb|AGA90834.1| transcription termination factor Rho [Thioflavicoccus mobilis 8321]
Length = 418
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 302/345 (87%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD + G+IR PK
Sbjct: 46 GEDIYGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFALLK+ +N ++PE +K + LF+N TPL P+K L LE S E+IT R IDL+
Sbjct: 106 DGERYFALLKVGDINYDRPENAKTKILFENFTPLFPQKRLKLEVGNGSTEDITARTIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIG GQRGL+V+ PK+GK++ILQ+IA +I N+ + +IV+LIDERPEEVTEM RSVRG
Sbjct: 166 APIGMGQRGLIVSPPKAGKTMILQNIAQSIGHNYPDCYLIVLLIDERPEEVTEMARSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNME+HL
Sbjct: 286 TGGVDANALQRPKRFFGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKR++PAIN+N+SGTRREELL+ D+LQK+W+LR++L+ +
Sbjct: 346 DRRIAEKRIFPAININRSGTRREELLMNPDELQKMWILRRILHPM 390
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 169/302 (55%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++ Q+ +E+ V R RKQ+L+FAI K + + GE I+GDG LE+L DGFG
Sbjct: 6 LKKTAVPDLVELAQS--MEIEGVGRSRKQDLIFAILKAQARRGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRV-------------------- 471
FLRS ++Y+A DDIY+SPSQIRRF L TG G+IR
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVGDINYDR 123
Query: 472 PKNG------ERYFALLKIKKVN------------------------------VASPKSG 495
P+N E + L K++ V+ PK+G
Sbjct: 124 PENAKTKILFENFTPLFPQKRLKLEVGNGSTEDITARTIDLVAPIGMGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K++ILQ+IA +I N+ + +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 184 KTMILQNIAQSIGHNYPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|229593267|ref|YP_002875386.1| transcription termination factor Rho [Pseudomonas fluorescens
SBW25]
gi|312963769|ref|ZP_07778240.1| Transcription termination factor rho [Pseudomonas fluorescens WH6]
gi|387896278|ref|YP_006326575.1| transcription termination factor Rho [Pseudomonas fluorescens A506]
gi|388468626|ref|ZP_10142836.1| transcription termination factor Rho [Pseudomonas synxantha BG33R]
gi|395649148|ref|ZP_10436998.1| transcription termination factor Rho [Pseudomonas extremaustralis
14-3 substr. 14-3b]
gi|408479654|ref|ZP_11185873.1| transcription termination factor Rho [Pseudomonas sp. R81]
gi|423694210|ref|ZP_17668730.1| transcription termination factor Rho [Pseudomonas fluorescens
SS101]
gi|440739443|ref|ZP_20918957.1| transcription termination factor Rho [Pseudomonas fluorescens
BRIP34879]
gi|447918960|ref|YP_007399528.1| transcription termination factor Rho [Pseudomonas poae RE*1-1-14]
gi|1710264|sp|P52155.1|RHO_PSEFC RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|454841|gb|AAA59209.1| The first ATG in the open reading frame was chosen as the
initiation codon [Pseudomonas fluorescens]
gi|229365133|emb|CAY53368.1| transcription termination factor [Pseudomonas fluorescens SBW25]
gi|311281804|gb|EFQ60414.1| Transcription termination factor rho [Pseudomonas fluorescens WH6]
gi|387163887|gb|AFJ59086.1| transcription termination factor Rho [Pseudomonas fluorescens A506]
gi|388001186|gb|EIK62515.1| transcription termination factor Rho [Pseudomonas fluorescens
SS101]
gi|388012206|gb|EIK73393.1| transcription termination factor Rho [Pseudomonas synxantha BG33R]
gi|440379639|gb|ELQ16229.1| transcription termination factor Rho [Pseudomonas fluorescens
BRIP34879]
gi|445202823|gb|AGE28032.1| transcription termination factor Rho [Pseudomonas poae RE*1-1-14]
Length = 419
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 87/122 (71%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE ++ + ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS +
Sbjct: 15 LQLAE----EMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADA 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNK 130
Query: 499 IL 500
IL
Sbjct: 131 IL 132
>gi|300721426|ref|YP_003710697.1| transcription termination factor Rho; polarity suppressor
[Xenorhabdus nematophila ATCC 19061]
gi|297627914|emb|CBJ88460.1| transcription termination factor Rho; polarity suppressor
[Xenorhabdus nematophila ATCC 19061]
Length = 419
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIG+GQRGL+VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQDELQKMWILRKIIHPM 390
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARSKIL 132
>gi|198282943|ref|YP_002219264.1| transcription termination factor Rho [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665961|ref|YP_002425146.1| transcription termination factor Rho [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247464|gb|ACH83057.1| transcription termination factor Rho [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518174|gb|ACK78760.1| transcription termination factor Rho [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 418
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G+ I+G+G LE+L DGFGFLR+ +YMA DDIY+SPSQ+RRF+L TGD V G+IR PK
Sbjct: 46 GDAIYGEGVLEILQDGFGFLRAASGSYMAGPDDIYVSPSQVRRFHLQTGDTVSGQIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK++ +N E PE ++N+ FD+LTPL P + L LE + + RIIDL+
Sbjct: 106 EGERYFALLKVESINFEAPEATRNKVNFDDLTPLFPDERLRLEYDAVPYGEMAPRIIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIGKGQRGL+VA PK+GK+++LQ IAHAIT NH E +IV+LIDERPEEVTEMQRSV+G
Sbjct: 166 SPIGKGQRGLIVAPPKTGKTVLLQQIAHAITANHPECYLIVLLIDERPEEVTEMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RH QVAE+VLEKAKRLVE K DV+ILLDSITRLARA+NTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHTQVAEIVLEKAKRLVEHKHDVVILLDSITRLARAFNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQ+PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNMEVHL
Sbjct: 286 TGGVDANALQKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMEVHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RRLAEKR YPAINLNKSGTRREELL+ + L K+WVLRKLL +
Sbjct: 346 DRRLAEKRTYPAINLNKSGTRREELLVPAEMLSKMWVLRKLLAPM 390
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 167/286 (58%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
D+ + R +KQE++F I K + G+ I+G+G LE+L DGFGFLR+ +YMA DDI
Sbjct: 20 DMGLEGTARQKKQEIIFNILKAHARNGDAIYGEGVLEILQDGFGFLRAASGSYMAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQ+RRF+L TG G+IR PK GERYFALLK++ KVN
Sbjct: 80 YVSPSQVRRFHLQTGDTVSGQIRPPKEGERYFALLKVESINFEAPEATRNKVNFDDLTPL 139
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA PK+GK+++LQ IAHAIT NH
Sbjct: 140 FPDERLRLEYDAVPYGEMAPRIIDLVSPIGKGQRGLIVAPPKTGKTVLLQQIAHAITANH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEMQRSV+GEV++STFDEPA
Sbjct: 200 PECYLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPATRHTQVAEIVLEKAKRLVEHKHD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARA+NTV+P+SGKVLTGGVD+NALQ+PKRFFGAAR
Sbjct: 260 VVILLDSITRLARAFNTVVPSSGKVLTGGVDANALQKPKRFFGAAR 305
>gi|384228553|ref|YP_005620288.1| transcription termination factor Rho [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539486|gb|AEO08353.1| transcription termination factor Rho [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 419
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ ++
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRKEELLTLPDELQKMWILRKIIHPMS 391
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 90/131 (68%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
NL MP+ T + + ++ R+RKQ+++F I K+ K GE IFGDG LE+L DG
Sbjct: 2 NLTALKNMPVSELITLGEKMGLENLARMRKQDIIFTILKQHAKSGEDIFGDGVLEILQDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNY 121
Query: 490 ASPKSGKSIIL 500
P++ +S IL
Sbjct: 122 DKPENARSKIL 132
>gi|58428520|gb|AAW77557.1| transcription termination factor Rho [Xanthomonas oryzae pv. oryzae
KACC 10331]
Length = 629
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 298/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 254 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 313
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SK + LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 314 FPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 373
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 374 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 433
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 434 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 493
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLT+IATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 494 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTVIATALVETGSKMDEVIYEEFKGTGNSE 553
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 554 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 601
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 237 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 296
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 297 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRF 356
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 357 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 416
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 417 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 476
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 477 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 516
>gi|188574749|ref|YP_001911678.1| transcription termination factor Rho [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188519201|gb|ACD57146.1| transcription termination factor Rho [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 629
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 298/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 254 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 313
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SK + LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 314 FPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 373
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 374 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 433
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 434 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 493
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLT+IATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 494 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTVIATALVETGSKMDEVIYEEFKGTGNSE 553
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 554 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 601
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 237 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 296
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 297 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRF 356
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 357 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 416
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 417 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 476
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 477 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 516
>gi|344344940|ref|ZP_08775798.1| transcription termination factor Rho [Marichromatium purpuratum
984]
gi|343803399|gb|EGV21307.1| transcription termination factor Rho [Marichromatium purpuratum
984]
Length = 418
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 304/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD + G+I
Sbjct: 42 QAKRGEDIYGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ +N ++PE +K++ LF+N TPL ++ L LE S E+IT R
Sbjct: 102 RPPKDGERYFALLKVSDINFDRPENAKSKILFENFTPLFAQERLTLEVGNGSTEDITART 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGL+V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDLVAPIGKGQRGLIVSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMAR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+H++RR+AE+R++PAIN+N+SGTRREELL+ +LQK+W+LRK+L+ +
Sbjct: 342 EIHMDRRIAERRIFPAININRSGTRREELLMGPAELQKMWILRKILHPM 390
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 177 VSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++A Q++D+E V R RKQ+L+FAI K + K GE I+GDG LE+L DGFG
Sbjct: 6 LKKTPVPELVALAQSMDIE--GVGRSRKQDLIFAILKAQAKRGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF L TG G+IR PK+GERYFALLK+ +N
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVSDINFDR 123
Query: 492 PKSGKSIIL 500
P++ KS IL
Sbjct: 124 PENAKSKIL 132
>gi|15617182|ref|NP_240395.1| transcription termination factor Rho [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681932|ref|YP_002468318.1| transcription termination factor Rho [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682487|ref|YP_002468871.1| transcription termination factor Rho [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471644|ref|ZP_05635643.1| transcription termination factor Rho [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|384226383|ref|YP_005617546.1| transcription termination factor Rho [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|384227440|ref|YP_005619190.1| transcription termination factor Rho [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|414562944|ref|YP_005618135.1| transcription termination factor Rho [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|11134337|sp|P57652.1|RHO_BUCAI RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|25299642|pir||A84999 transcription termination factor rho [imported] - Buchnera sp.
(strain APS)
gi|10039247|dbj|BAB13281.1| transcription termination factor rho [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219622220|gb|ACL30376.1| transcription termination factor Rho [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624775|gb|ACL30930.1| transcription termination factor Rho [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086316|gb|ADP66398.1| transcription termination factor Rho [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086890|gb|ADP66971.1| transcription termination factor Rho [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087480|gb|ADP67560.1| transcription termination factor Rho [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 419
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ ++
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRKEELLTLPDELQKMWILRKIIHPMS 391
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 91/131 (69%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
NL MP+ T + + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DG
Sbjct: 2 NLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNY 121
Query: 490 ASPKSGKSIIL 500
P++ +S IL
Sbjct: 122 DKPENARSKIL 132
>gi|315125228|ref|YP_004067231.1| transcription termination factor Rho [Pseudoalteromonas sp. SM9913]
gi|315013741|gb|ADT67079.1| transcription termination factor Rho [Pseudoalteromonas sp. SM9913]
Length = 419
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/349 (70%), Positives = 304/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKGGENIFGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH + +ER SKE+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGLLVA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLLVAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKPDELQKLWILRKIVHDMS 391
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++FAI K K GE IFG G LE+L DGFG
Sbjct: 6 LKDKSIKELVNLAESMGLE--NVARLRKQDIIFAILKSHAKGGENIFGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|344199293|ref|YP_004783619.1| transcription termination factor Rho [Acidithiobacillus ferrivorans
SS3]
gi|343774737|gb|AEM47293.1| transcription termination factor Rho [Acidithiobacillus ferrivorans
SS3]
Length = 458
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G+ I+G+G LE+L DGFGFLR+ +YMA DDIY+SPSQ+RRF+L TGD V G+IR PK
Sbjct: 86 GDAIYGEGVLEILQDGFGFLRAASGSYMAGPDDIYVSPSQVRRFHLQTGDTVSGQIRPPK 145
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK++ +N E PE ++N+ FD+LTPL P++ L LE + + RIIDL+
Sbjct: 146 EGERYFALLKVESINFEAPEATRNKVNFDDLTPLFPEERLRLESDNIPYGEMAPRIIDLV 205
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIGKGQRGL+VA PK+GK+++LQ IAHAIT NH E +IV+LIDERPEEVTEMQRSV+G
Sbjct: 206 SPIGKGQRGLIVAPPKTGKTVLLQQIAHAITANHPECYLIVLLIDERPEEVTEMQRSVKG 265
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RH QVAE+VLEKAKRLVE K DV+ILLDSITRLARA+NTV+P+SGKVL
Sbjct: 266 EVVSSTFDEPATRHTQVAEIVLEKAKRLVEHKHDVVILLDSITRLARAFNTVVPSSGKVL 325
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQ+PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNMEVHL
Sbjct: 326 TGGVDANALQKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMEVHL 385
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RRLAEKR YPAINLNKSGTRREELL+ + L K+WVLRKLL +
Sbjct: 386 DRRLAEKRTYPAINLNKSGTRREELLVPAEMLSKMWVLRKLLAPM 430
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 167/286 (58%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + R +KQE++F I K + G+ I+G+G LE+L DGFGFLR+ +YMA DDI
Sbjct: 60 EMGLEGTARQKKQEIIFNILKAHARNGDAIYGEGVLEILQDGFGFLRAASGSYMAGPDDI 119
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQ+RRF+L TG G+IR PK GERYFALLK++ KVN
Sbjct: 120 YVSPSQVRRFHLQTGDTVSGQIRPPKEGERYFALLKVESINFEAPEATRNKVNFDDLTPL 179
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA PK+GK+++LQ IAHAIT NH
Sbjct: 180 FPEERLRLESDNIPYGEMAPRIIDLVSPIGKGQRGLIVAPPKTGKTVLLQQIAHAITANH 239
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEMQRSV+GEV++STFDEPA
Sbjct: 240 PECYLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPATRHTQVAEIVLEKAKRLVEHKHD 299
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARA+NTV+P+SGKVLTGGVD+NALQ+PKRFFGAAR
Sbjct: 300 VVILLDSITRLARAFNTVVPSSGKVLTGGVDANALQKPKRFFGAAR 345
>gi|322834949|ref|YP_004214976.1| transcription termination factor Rho [Rahnella sp. Y9602]
gi|383192134|ref|YP_005202262.1| transcription termination factor Rho [Rahnella aquatilis CIP 78.65
= ATCC 33071]
gi|384260172|ref|YP_005404106.1| transcription termination factor Rho [Rahnella aquatilis HX2]
gi|321170150|gb|ADW75849.1| transcription termination factor Rho [Rahnella sp. Y9602]
gi|371590392|gb|AEX54122.1| transcription termination factor Rho [Rahnella aquatilis CIP 78.65
= ATCC 33071]
gi|380756148|gb|AFE60539.1| transcription termination factor Rho [Rahnella aquatilis HX2]
Length = 419
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A + + LE + R+RKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSDLIALGENMGLENQA--RMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ +S IL
Sbjct: 124 PENARSKIL 132
>gi|357415745|ref|YP_004928765.1| transcription termination factor rho protein [Pseudoxanthomonas
spadix BD-a59]
gi|355333323|gb|AER54724.1| transcription termination factor rho protein [Pseudoxanthomonas
spadix BD-a59]
Length = 426
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SK + LF+NLTPL P+K LER S E+I+GRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPIEASKGKVLFENLTPLFPRKRFTLERGNGSSEDISGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + MIV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 351 VHLNRRIAEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 398
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH + MIV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 185 VSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 244
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NAL R
Sbjct: 245 ARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHR 304
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 305 PKRFFGAAR 313
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 74/107 (69%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 34 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 93
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G IR PK+GERYFAL + +N ++ K +L
Sbjct: 94 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPIEASKGKVL 140
>gi|317494809|ref|ZP_07953220.1| transcription termination factor Rho [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917134|gb|EFV38482.1| transcription termination factor Rho [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 419
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCTLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|21672828|ref|NP_660895.1| transcription termination factor Rho [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|22654270|sp|O51891.2|RHO_BUCAP RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|21623481|gb|AAM68106.1| transcription termination factor Rho [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 419
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 302/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNAVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ ++
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRKEELLTLPDELQKMWILRKIIHPMS 391
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 90/131 (68%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
NL MP+ T + + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DG
Sbjct: 2 NLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN
Sbjct: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNAVNY 121
Query: 490 ASPKSGKSIIL 500
P++ +S IL
Sbjct: 122 DKPENARSKIL 132
>gi|384228004|ref|YP_005619749.1| transcription termination factor Rho [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538944|gb|AEO08921.1| transcription termination factor Rho [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 419
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ ++
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRKEELLTLPDELQKMWILRKIIHPMS 391
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 83 PSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|85711915|ref|ZP_01042970.1| transcription termination factor Rho [Idiomarina baltica OS145]
gi|85694312|gb|EAQ32255.1| transcription termination factor Rho [Idiomarina baltica OS145]
Length = 422
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 250/345 (72%), Positives = 300/345 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+G G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGGGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIGGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLKI++VN +KPE S+N+ LF+NLTPLH + LER S E+IT R++
Sbjct: 103 PPKDSERYFALLKIREVNFDKPENSRNKILFENLTPLHANERFHLERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA ++ NH EA +IV+LIDERPEEVTEM R
Sbjct: 163 DLSAPIGKGQRGLIVAPPKAGKTMLLQNIATSLAANHPEAELIVLLIDERPEEVTEMHRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPANRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R+LAE+RV+PAI+ N+SGTRREELL D+LQK+W+LRK++
Sbjct: 343 LHLNRKLAERRVFPAIDFNRSGTRREELLTSQDELQKMWILRKIM 387
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA ++ NH EA +IV+LIDERPEEVTEM R V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIATSLAANHPEAELIVLLIDERPEEVTEMHRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 NRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 83/110 (75%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K K GE I+G G LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARLRKQDIIFAILKAHAKSGEDIYGGGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK+ ERYFALLKI++VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTIGGKIRPPKDSERYFALLKIREVNFDKPENSRNKIL 132
>gi|424795153|ref|ZP_18221040.1| transcription termination factor Rho [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422795605|gb|EKU24267.1| transcription termination factor Rho [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 601
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 226 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 285
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P+K LER S E+I+GRI+
Sbjct: 286 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRKRFTLERGNGSSEDISGRIL 345
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + MIV+LIDERPEEVTEMQR+
Sbjct: 346 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQRT 405
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 406 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 465
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 466 KVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 525
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 526 VHLNRRIAEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 573
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 156/282 (55%), Gaps = 83/282 (29%)
Query: 392 NSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSP 451
+ V R RKQ+++F + K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SP
Sbjct: 207 DGVARARKQDVIFVLLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISP 266
Query: 452 SQIRRFNLHTGILWKGEIRVPK--------------NGE------------RYFALLKIK 485
SQIRRFNL TG G IR PK NGE AL K
Sbjct: 267 SQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRK 326
Query: 486 KVN------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
+ V+ PK+GK++++Q +A AITTNH +
Sbjct: 327 RFTLERGNGSSEDISGRILDLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVH 386
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
MIV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 387 MIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVIL 446
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN V+P+SGKVL+GGVD+NAL RPKRFFGAAR
Sbjct: 447 LDSITRLARAYNNVVPSSGKVLSGGVDANALHRPKRFFGAAR 488
>gi|410086282|ref|ZP_11282994.1| Transcription termination factor Rho [Morganella morganii SC01]
gi|421491488|ref|ZP_15938851.1| RHO [Morganella morganii subsp. morganii KT]
gi|455737409|ref|YP_007503675.1| Transcription termination factor Rho [Morganella morganii subsp.
morganii KT]
gi|400193922|gb|EJO27055.1| RHO [Morganella morganii subsp. morganii KT]
gi|409767127|gb|EKN51207.1| Transcription termination factor Rho [Morganella morganii SC01]
gi|455418972|gb|AGG29302.1| Transcription termination factor Rho [Morganella morganii subsp.
morganii KT]
Length = 419
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH + L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARSKILFENLTPLHANRRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQDELQKMWILRKIIHPM 390
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARSKIL 132
>gi|407697859|ref|YP_006822647.1| transcription termination factor Rho [Alcanivorax dieselolei B5]
gi|407255197|gb|AFT72304.1| transcription termination factor Rho [Alcanivorax dieselolei B5]
Length = 419
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/370 (67%), Positives = 312/370 (84%), Gaps = 2/370 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K G I+GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKNGSDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFA+LK+ ++N +KPE +KN+ LF+NLTPL P + L++E S E+IT R+I
Sbjct: 103 PPKDGERYFAMLKVNEINFDKPENAKNKILFENLTPLFPTERLVMEVGNGSTEDITARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGL+VA PK+GK+++LQ+IAH+I N+ E+ MIV+LIDERPEEVTEM R+
Sbjct: 163 DLVAPIGKGQRGLIVAPPKAGKTMLLQNIAHSIARNNPESHMIVLLIDERPEEVTEMSRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DVIILLDSITRLARAYNTV P+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKQDVIILLDSITRLARAYNTVQPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL+R+++EKRV+PAIN+ KSGTRREE L+ +D+LQK+W+LRK+L+ M F +
Sbjct: 343 LHLDRKVSEKRVFPAINIRKSGTRREERLVSEDELQKMWILRKVLHP--MDEIGAMEFLL 400
Query: 362 KRTIPVEKNL 371
R + NL
Sbjct: 401 DRMKQTKTNL 410
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IAH+I N+ E+ MIV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTMLLQNIAHSIARNNPESHMIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKQDVIILLDSITRLARAYNTVQPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + ++ R RKQ+++F+I K+ K G I+GDG LE+L DGFGFLRS +Y+A DDI
Sbjct: 20 ELGLENLARTRKQDVIFSILKRAAKNGSDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+GERYFA+LK+ ++N P++ K+ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKDGERYFAMLKVNEINFDKPENAKNKIL 132
>gi|387812838|ref|YP_005428315.1| transcription termination factor Rho [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337845|emb|CCG93892.1| transcription termination factor Rho; polarity suppressor
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 420
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/361 (67%), Positives = 310/361 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ ++N +KP+ ++N+ LF+NLTPL P++ L+LE S E+++ R++
Sbjct: 103 PPKDGERYFALLKVNEINFDKPDNARNKILFENLTPLFPQERLMLEAGNGSTEDLSSRVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGL+V+ PK+GK++++Q IA +IT N+ E ++V+LIDERPEEVTEMQR+
Sbjct: 163 DLVAPIGKGQRGLIVSPPKAGKTLLMQGIAQSITRNNPECHLMVLLIDERPEEVTEMQRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARN+EEGGSLTI+ATAL+ TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNVEEGGSLTILATALVNTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
VHL+RR+AEKRVYPAIN+ SGTRRE+LL+ + +Q++W+LRKLL+S+ + +
Sbjct: 343 VHLDRRIAEKRVYPAINIRSSGTRREDLLMSEADIQRVWILRKLLHSMDDDTAAIEFLLD 402
Query: 362 K 362
K
Sbjct: 403 K 403
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q IA +IT N+ E ++V+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLLMQGIAQSITRNNPECHLMVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P +L Q + L +++ R RKQ+++F I KK K GE I+GDG LE+L DGFG
Sbjct: 6 LKQKSVPELLDIAQEMGL--DNLARSRKQDVIFTILKKHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEINFDK 123
Query: 492 PKSGKSIIL 500
P + ++ IL
Sbjct: 124 PDNARNKIL 132
>gi|145636572|ref|ZP_01792240.1| transcription termination factor Rho [Haemophilus influenzae
PittHH]
gi|342903938|ref|ZP_08725740.1| Transcription termination factor Rho [Haemophilus haemolyticus
M21621]
gi|373466467|ref|ZP_09557781.1| transcription termination factor Rho [Haemophilus sp. oral taxon
851 str. F0397]
gi|417840539|ref|ZP_12486669.1| Transcription termination factor Rho [Haemophilus haemolyticus
M19107]
gi|417841345|ref|ZP_12487449.1| Transcription termination factor Rho [Haemophilus haemolyticus
M19501]
gi|417843109|ref|ZP_12489186.1| Transcription termination factor Rho [Haemophilus haemolyticus
M21127]
gi|417844645|ref|ZP_12490686.1| Transcription termination factor Rho [Haemophilus haemolyticus
M21639]
gi|145270397|gb|EDK10332.1| transcription termination factor Rho [Haemophilus influenzae
PittHH]
gi|341947979|gb|EGT74619.1| Transcription termination factor Rho [Haemophilus haemolyticus
M19107]
gi|341949383|gb|EGT75987.1| Transcription termination factor Rho [Haemophilus haemolyticus
M19501]
gi|341950343|gb|EGT76932.1| Transcription termination factor Rho [Haemophilus haemolyticus
M21127]
gi|341953947|gb|EGT80441.1| Transcription termination factor Rho [Haemophilus haemolyticus
M21621]
gi|341956604|gb|EGT83025.1| Transcription termination factor Rho [Haemophilus haemolyticus
M21639]
gi|371760249|gb|EHO48938.1| transcription termination factor Rho [Haemophilus sp. oral taxon
851 str. F0397]
Length = 420
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ +SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFKRSGTRKEDLLTTSDELQKMWILRKIL 388
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|145638799|ref|ZP_01794408.1| transcription termination factor Rho [Haemophilus influenzae
PittII]
gi|148827449|ref|YP_001292202.1| transcription termination factor Rho [Haemophilus influenzae
PittGG]
gi|260582606|ref|ZP_05850396.1| transcription termination factor Rho [Haemophilus influenzae NT127]
gi|319775836|ref|YP_004138324.1| transcription termination factor rho [Haemophilus influenzae F3047]
gi|319896628|ref|YP_004134821.1| transcription termination factor rho [Haemophilus influenzae F3031]
gi|145272394|gb|EDK12302.1| transcription termination factor Rho [Haemophilus influenzae
PittII]
gi|148718691|gb|ABQ99818.1| transcription termination factor Rho [Haemophilus influenzae
PittGG]
gi|260094417|gb|EEW78315.1| transcription termination factor Rho [Haemophilus influenzae NT127]
gi|309750289|gb|ADO80273.1| Transcription termination factor Rho [Haemophilus influenzae R2866]
gi|317432130|emb|CBY80481.1| transcription termination factor rho [Haemophilus influenzae F3031]
gi|317450427|emb|CBY86643.1| transcription termination factor rho [Haemophilus influenzae F3047]
Length = 420
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLKI +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKIDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ +SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFQRSGTRKEDLLTTADELQKMWILRKIL 388
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKIDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|251787043|ref|YP_003001347.1| transcription termination factor Rho monomer; polarity suppressor,
subunit of transcription termination factor Rho
[Escherichia coli BL21(DE3)]
gi|253775592|ref|YP_003038423.1| transcription termination factor Rho [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163727|ref|YP_003046835.1| transcription termination factor Rho [Escherichia coli B str.
REL606]
gi|254290477|ref|YP_003056225.1| transcription termination factor Rho [Escherichia coli BL21(DE3)]
gi|242379316|emb|CAQ34127.1| transcription termination factor Rho monomer; polarity suppressor,
subunit of transcription termination factor Rho
[Escherichia coli BL21(DE3)]
gi|253326636|gb|ACT31238.1| transcription termination factor Rho [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975628|gb|ACT41299.1| transcription termination factor Rho [Escherichia coli B str.
REL606]
gi|253979784|gb|ACT45454.1| transcription termination factor Rho [Escherichia coli BL21(DE3)]
Length = 419
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S SQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSLSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+S SQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSLSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|293393866|ref|ZP_06638173.1| transcription termination factor rho [Serratia odorifera DSM 4582]
gi|291423693|gb|EFE96915.1| transcription termination factor rho [Serratia odorifera DSM 4582]
Length = 419
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/347 (70%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQNIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 390
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQNIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 132
>gi|329123680|ref|ZP_08252240.1| transcription termination factor Rho [Haemophilus aegyptius ATCC
11116]
gi|327469879|gb|EGF15344.1| transcription termination factor Rho [Haemophilus aegyptius ATCC
11116]
Length = 420
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLKI +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKIDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSAEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ +SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFQRSGTRKEDLLTTADELQKMWILRKIL 388
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKIDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSAEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|183600259|ref|ZP_02961752.1| hypothetical protein PROSTU_03812 [Providencia stuartii ATCC 25827]
gi|212710198|ref|ZP_03318326.1| hypothetical protein PROVALCAL_01257 [Providencia alcalifaciens DSM
30120]
gi|386743687|ref|YP_006216866.1| transcription termination factor Rho, polarity suppressor
[Providencia stuartii MRSN 2154]
gi|422019052|ref|ZP_16365602.1| transcription termination factor Rho [Providencia alcalifaciens
Dmel2]
gi|188020048|gb|EDU58088.1| transcription termination factor Rho [Providencia stuartii ATCC
25827]
gi|212687197|gb|EEB46725.1| hypothetical protein PROVALCAL_01257 [Providencia alcalifaciens DSM
30120]
gi|384480380|gb|AFH94175.1| transcription termination factor Rho, polarity suppressor
[Providencia stuartii MRSN 2154]
gi|414103594|gb|EKT65168.1| transcription termination factor Rho [Providencia alcalifaciens
Dmel2]
Length = 419
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQDELQKMWILRKIIHPM 390
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARSKIL 132
>gi|408372576|ref|ZP_11170276.1| transcription termination factor Rho [Alcanivorax hongdengensis
A-11-3]
gi|407767551|gb|EKF75988.1| transcription termination factor Rho [Alcanivorax hongdengensis
A-11-3]
Length = 419
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/370 (67%), Positives = 312/370 (84%), Gaps = 2/370 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K G I+GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKNGSDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFA+LK+ ++N +KPE +KN+ LF+NLTPL P + L++E S E+IT R+I
Sbjct: 103 PPKDGERYFAMLKVNEINTDKPENAKNKILFENLTPLFPTERLVMEIGNGSTEDITSRVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGL+VA PK+GK+++LQ+IAH+I N+ E+ MIV+LIDERPEEVTEM R+
Sbjct: 163 DLVAPIGKGQRGLIVAPPKAGKTMLLQNIAHSIARNNPESHMIVLLIDERPEEVTEMSRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DVIILLDSITRLARAYNTV P+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKQDVIILLDSITRLARAYNTVQPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVDTGSKMDEVIFEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL+R++AEKRV+PAIN+ KSGTRREE L+ +D+LQK+W+LRK+L+ M F I
Sbjct: 343 LHLDRKVAEKRVFPAINIKKSGTRREERLVSEDELQKMWILRKVLHP--MDEIGAMEFLI 400
Query: 362 KRTIPVEKNL 371
R + NL
Sbjct: 401 DRMKQTKTNL 410
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IAH+I N+ E+ MIV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTMLLQNIAHSIARNNPESHMIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKQDVIILLDSITRLARAYNTVQPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + ++ R RKQ+++F+I K+ K G I+GDG LE+L DGFGFLRS +Y+A DDI
Sbjct: 20 ELGLENLARTRKQDVIFSILKRAAKNGSDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+GERYFA+LK+ ++N P++ K+ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFAMLKVNEINTDKPENAKNKIL 132
>gi|398839816|ref|ZP_10597059.1| transcription termination factor Rho [Pseudomonas sp. GM102]
gi|398862150|ref|ZP_10617762.1| transcription termination factor Rho [Pseudomonas sp. GM79]
gi|398905113|ref|ZP_10652594.1| transcription termination factor Rho [Pseudomonas sp. GM50]
gi|399002941|ref|ZP_10705616.1| transcription termination factor Rho [Pseudomonas sp. GM18]
gi|398111975|gb|EJM01847.1| transcription termination factor Rho [Pseudomonas sp. GM102]
gi|398123737|gb|EJM13275.1| transcription termination factor Rho [Pseudomonas sp. GM18]
gi|398174831|gb|EJM62612.1| transcription termination factor Rho [Pseudomonas sp. GM50]
gi|398231120|gb|EJN17116.1| transcription termination factor Rho [Pseudomonas sp. GM79]
Length = 419
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/351 (71%), Positives = 303/351 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ + S
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPMDEVS 394
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|145301124|ref|YP_001143965.1| transcription termination factor Rho [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362971|ref|ZP_12963588.1| transcription termination factor Rho [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853896|gb|ABO92217.1| transcription termination factor Rho [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356685837|gb|EHI50457.1| transcription termination factor Rho [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 421
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 301/347 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 44 KGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN ++PE +N+ LF+NLTPLH + L +ER S E+IT R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDRPENVRNKILFENLTPLHANERLRMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKR+YPAI++ +SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRIYPAIDITRSGTRKEELLTTGDELQKMWILRKIIHPM 390
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R K++++FAI K K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTVSGKIRPPKEGERYFALLKVNEVNYDRPENVRNKIL 132
>gi|149908491|ref|ZP_01897153.1| transcription termination factor Rho [Moritella sp. PE36]
gi|149808325|gb|EDM68262.1| transcription termination factor Rho [Moritella sp. PE36]
Length = 420
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/348 (71%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVGGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLKI +VN ++PE S+N+ LF+NLTP+HP + L LER S E+IT RI+
Sbjct: 103 PPKDGERYFALLKIDQVNYDRPENSRNKILFENLTPIHPIERLRLERGNGSTEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I NH +AI++V+LIDERPEEVTEM+R
Sbjct: 163 DLSAPIGKGQRGLIVAPPKAGKTMLLQNIASSIALNHPDAILMVLLIDERPEEVTEMRRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEM++EKAKRLVE KKDVIILLDSITRLARAYNT+ P+SG
Sbjct: 223 VRGEVIASTFDEPASRHVQVAEMMIEKAKRLVEHKKDVIILLDSITRLARAYNTITPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAAR +EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 283 KILSGGVDANALHRPKRFFGAARKVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNQE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AE+R+YPAI+ +SGTRREELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAERRIYPAIDFTRSGTRREELLADKNELQKMWILRKIIHPM 390
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 92/130 (70%), Gaps = 27/130 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH +AI++V+LIDERPEEVTEM+R VRGEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIASSIALNHPDAILMVLLIDERPEEVTEMRRLVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNT+ P+SGK+L+GGVD+NAL R
Sbjct: 237 SRHVQVAEMMIEKAKRLVEHKKDVIILLDSITRLARAYNTITPSSGKILSGGVDANALHR 296
Query: 582 PKRFFGAARK 591
PKRFFGAARK
Sbjct: 297 PKRFFGAARK 306
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++F+I K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENLARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK+GERYFALLKI +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTVGGKIRPPKDGERYFALLKIDQVNYDRPENSRNKIL 132
>gi|398851839|ref|ZP_10608515.1| transcription termination factor Rho [Pseudomonas sp. GM80]
gi|398969879|ref|ZP_10683107.1| transcription termination factor Rho [Pseudomonas sp. GM30]
gi|398991776|ref|ZP_10694872.1| transcription termination factor Rho [Pseudomonas sp. GM24]
gi|399012456|ref|ZP_10714777.1| transcription termination factor Rho [Pseudomonas sp. GM16]
gi|424925551|ref|ZP_18348912.1| transcription termination factor [Pseudomonas fluorescens R124]
gi|398115578|gb|EJM05359.1| transcription termination factor Rho [Pseudomonas sp. GM16]
gi|398137239|gb|EJM26303.1| transcription termination factor Rho [Pseudomonas sp. GM24]
gi|398141297|gb|EJM30223.1| transcription termination factor Rho [Pseudomonas sp. GM30]
gi|398245753|gb|EJN31262.1| transcription termination factor Rho [Pseudomonas sp. GM80]
gi|404306711|gb|EJZ60673.1| transcription termination factor [Pseudomonas fluorescens R124]
Length = 419
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKIL 132
>gi|329297881|ref|ZP_08255217.1| transcription termination factor Rho [Plautia stali symbiont]
Length = 419
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I N+ + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNYPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQEELQKMWILRKIIHPM 390
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 92/131 (70%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
NL K P+ T ++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DG
Sbjct: 2 NLTKLKNTPVSALITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 62 FGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNY 121
Query: 490 ASPKSGKSIIL 500
P++ +S IL
Sbjct: 122 DKPENARSKIL 132
>gi|378696486|ref|YP_005178444.1| transcription termination factor [Haemophilus influenzae 10810]
gi|301169005|emb|CBW28602.1| transcription termination factor [Haemophilus influenzae 10810]
Length = 420
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ +SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFQRSGTRKEDLLTTADELQKMWILRKIL 388
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|344338706|ref|ZP_08769637.1| transcription termination factor Rho [Thiocapsa marina 5811]
gi|343801288|gb|EGV19231.1| transcription termination factor Rho [Thiocapsa marina 5811]
Length = 418
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/349 (70%), Positives = 303/349 (86%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD + G+I
Sbjct: 42 QAKRGEDIYGDGVLEILTDGFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ +N ++PE +K++ LF+N TPL K L LE S E+IT R
Sbjct: 102 RPPKDGERYFALLKVNDINFDRPENAKSKILFENFTPLFANKRLTLEIGNGSTEDITART 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGL+V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDLVAPIGKGQRGLIVSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMAR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+H++RR+AE+R++PAIN+N+SGTRREELL+ +LQK+W+LRK+L+ +
Sbjct: 342 EIHMDRRIAERRIFPAININRSGTRREELLMNPAELQKMWILRKILHPM 390
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 135/302 (44%), Positives = 171/302 (56%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK A +P ++A Q+ +E+ V R RKQ+L+FAI K + K GE I+GDG LE+L DGFG
Sbjct: 6 LKKAPVPELVALAQS--MEIEGVGRSRKQDLIFAILKAQAKRGEDIYGDGVLEILTDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRV-------------------- 471
FLRS ++Y+A DDIY+SPSQIRRF L TG G+IR
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVNDINFDR 123
Query: 472 PKNG------ERYFALLKIKKVN------------------------------VASPKSG 495
P+N E + L K++ V+ PK+G
Sbjct: 124 PENAKSKILFENFTPLFANKRLTLEIGNGSTEDITARTIDLVAPIGKGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH + +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 184 KTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|260912842|ref|ZP_05919328.1| transcription termination factor rho [Pasteurella dagmatis ATCC
43325]
gi|260633220|gb|EEX51385.1| transcription termination factor rho [Pasteurella dagmatis ATCC
43325]
Length = 420
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 302/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ ++SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFSRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/283 (49%), Positives = 170/283 (60%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+S
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFNL TG +G+IR PK GERYFALLK+ +VN
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDRPEVSRSKILFENLTPLHAN 143
Query: 489 ---------------------VASP-------------KSGKSIILQHIAHAITTNHSEA 514
+ASP K+GK+++LQ+IA +IT N+ E
Sbjct: 144 SRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPEC 203
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 204 ELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVI 263
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 264 LLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|254282603|ref|ZP_04957571.1| transcription termination factor Rho [gamma proteobacterium
NOR51-B]
gi|219678806|gb|EED35155.1| transcription termination factor Rho [gamma proteobacterium
NOR51-B]
Length = 524
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/350 (71%), Positives = 306/350 (87%), Gaps = 3/350 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G IR
Sbjct: 146 KSGEDIWGDGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTITGMIRP 205
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLK++ VN E PE +K + LF+NLTPL P + L LE+ S E++TGRIID
Sbjct: 206 PKDSERYFALLKVQDVNFESPESAKAKILFENLTPLFPNERLTLEQGNGSTEDLTGRIID 265
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L AP+GKGQRGLLVA PK+GK+I++Q++A AI TN+ E +IV+LIDERPEEVTEMQRSV
Sbjct: 266 LCAPVGKGQRGLLVAPPKAGKTIMMQNMAQAIITNNPECYVIVLLIDERPEEVTEMQRSV 325
Query: 183 --RG-EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RG EV+ASTFDEP RHVQVA+MV+EKAKRLVE K+DV+ILLDSITRLARA+NTV+P+
Sbjct: 326 GIRGAEVVASTFDEPPARHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAFNTVVPS 385
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATALI+TGS+MD+VIYEEFKGTGN
Sbjct: 386 SGKVLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALIDTGSKMDEVIYEEFKGTGN 445
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+E+HL+R++AEKR+YPAIN+ +SGTRREELL +D+LQ++W+LRKLL+ +
Sbjct: 446 LELHLDRKIAEKRIYPAINIRRSGTRREELLTSEDELQRMWILRKLLHGM 495
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 87/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FA+ K+ K GE I+GDG LE+LPDGFGFLRS S+Y+A DDI
Sbjct: 122 EMGLDNMARSRKQDIIFALLKRHAKSGEDIWGDGVLEILPDGFGFLRSADSSYLAGPDDI 181
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G IR PK+ ERYFALLK++ VN SP+S K+ IL
Sbjct: 182 YVSPSQIRRFNLRTGDTITGMIRPPKDSERYFALLKVQDVNFESPESAKAKIL 234
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 92/132 (69%), Gaps = 30/132 (22%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV--RG-EVIASTFD 545
VA PK+GK+I++Q++A AI TN+ E +IV+LIDERPEEVTEMQRSV RG EV+ASTFD
Sbjct: 279 VAPPKAGKTIMMQNMAQAIITNNPECYVIVLLIDERPEEVTEMQRSVGIRGAEVVASTFD 338
Query: 546 EPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNA 578
EP L + +LARA+NTV+P+SGKVLTGGVD++A
Sbjct: 339 EPPARHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAFNTVVPSSGKVLTGGVDAHA 398
Query: 579 LQRPKRFFGAAR 590
L+RPKRFFGAAR
Sbjct: 399 LERPKRFFGAAR 410
>gi|145640232|ref|ZP_01795816.1| transcription termination factor Rho [Haemophilus influenzae R3021]
gi|145274818|gb|EDK14680.1| transcription termination factor Rho [Haemophilus influenzae
22.4-21]
Length = 415
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ +SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFKRSGTRKEDLLTTADELQKMWILRKIL 388
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|359436257|ref|ZP_09226375.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20311]
gi|359447480|ref|ZP_09237076.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20439]
gi|358029117|dbj|GAA62624.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20311]
gi|358038761|dbj|GAA73325.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20439]
Length = 419
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 304/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKGGENIFGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH + +ER SKE+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGLLVA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLLVAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AE+RV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAERRVFPAIDFNRSGTRREELLTKPDELQKLWILRKIVHDMS 391
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ + +++ LE +V RLRKQ+++FAI K K GE IFG G LE+L DGFG
Sbjct: 6 LKDKSIKELVNQAESMGLE--NVARLRKQDIIFAILKSHAKGGENIFGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|295698458|ref|YP_003603113.1| transcription termination factor Rho [Candidatus Riesia
pediculicola USDA]
gi|291157244|gb|ADD79689.1| transcription termination factor Rho [Candidatus Riesia
pediculicola USDA]
Length = 419
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG+G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGNGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENSRNKILFENLTPLHANIRFRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+I+LQ+IA I +N+S ++IV+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGKGQRGLIVAPPKAGKTILLQNIAANIKSNYSNCVLIVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V GEVIASTFDEPA RHVQV+EMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VNGEVIASTFDEPASRHVQVSEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGG+D+NAL RPKRFFGAARN++EGGSLTIIATALIETGS+MDDVIYEEFKGTGNME
Sbjct: 283 KVLTGGIDANALHRPKRFFGAARNVKEGGSLTIIATALIETGSKMDDVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR++EKR++PAI+ N+SGTR+EELL ++LQK+W+LR++++ +
Sbjct: 343 LHLSRRISEKRIFPAIDYNRSGTRKEELLTTKNELQKMWILRRIIHPM 390
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I +N+S ++IV+LIDERPEEVTEMQR V GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAANIKSNYSNCVLIVLLIDERPEEVTEMQRLVNGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGG+D+NAL R
Sbjct: 237 SRHVQVSEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGIDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ + I LE ++ R+RKQ+++F+I K+ K GE IFG+G LE+L DGFG
Sbjct: 6 LKNKLVSELIVLGEKIGLE--NLARMRKQDIIFSILKQHAKSGEDIFGNGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRNKIL 132
>gi|197287127|ref|YP_002152999.1| transcription termination factor Rho [Proteus mirabilis HI4320]
gi|227357182|ref|ZP_03841551.1| transcription termination factor Rho [Proteus mirabilis ATCC 29906]
gi|425070289|ref|ZP_18473403.1| transcription termination factor Rho [Proteus mirabilis WGLW6]
gi|425074110|ref|ZP_18477215.1| transcription termination factor Rho [Proteus mirabilis WGLW4]
gi|194684614|emb|CAR46504.1| transcription termination factor Rho [Proteus mirabilis HI4320]
gi|227162714|gb|EEI47681.1| transcription termination factor Rho [Proteus mirabilis ATCC 29906]
gi|404594350|gb|EKA94937.1| transcription termination factor Rho [Proteus mirabilis WGLW4]
gi|404595555|gb|EKA96095.1| transcription termination factor Rho [Proteus mirabilis WGLW6]
Length = 419
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQDELQKMWILRKIIHPM 390
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A + + LE ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELIALGENMGLE--NLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ +S IL
Sbjct: 124 PENARSKIL 132
>gi|16272250|ref|NP_438462.1| transcription termination factor Rho [Haemophilus influenzae Rd
KW20]
gi|68248897|ref|YP_248009.1| transcription termination factor Rho [Haemophilus influenzae
86-028NP]
gi|145628634|ref|ZP_01784434.1| transcription termination factor Rho [Haemophilus influenzae
22.1-21]
gi|145631456|ref|ZP_01787226.1| transcription termination factor Rho [Haemophilus influenzae R3021]
gi|145632539|ref|ZP_01788273.1| transcription termination factor Rho [Haemophilus influenzae 3655]
gi|145634705|ref|ZP_01790414.1| transcription termination factor Rho [Haemophilus influenzae
PittAA]
gi|148825426|ref|YP_001290179.1| transcription termination factor Rho [Haemophilus influenzae
PittEE]
gi|229844997|ref|ZP_04465134.1| transcription termination factor Rho [Haemophilus influenzae
6P18H1]
gi|229846384|ref|ZP_04466492.1| transcription termination factor Rho [Haemophilus influenzae
7P49H1]
gi|260581236|ref|ZP_05849055.1| transcription termination factor Rho [Haemophilus influenzae RdAW]
gi|386265308|ref|YP_005828800.1| Transcription termination factor Rho [Haemophilus influenzae R2846]
gi|1172927|sp|P44619.1|RHO_HAEIN RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|1573263|gb|AAC21959.1| transcription termination factor (rho) [Haemophilus influenzae Rd
KW20]
gi|68057096|gb|AAX87349.1| transcription termination factor rho [Haemophilus influenzae
86-028NP]
gi|144979104|gb|EDJ88790.1| transcription termination factor Rho [Haemophilus influenzae
22.1-21]
gi|144982993|gb|EDJ90502.1| transcription termination factor Rho [Haemophilus influenzae R3021]
gi|144986734|gb|EDJ93286.1| transcription termination factor Rho [Haemophilus influenzae 3655]
gi|145268250|gb|EDK08245.1| transcription termination factor Rho [Haemophilus influenzae
PittAA]
gi|148715586|gb|ABQ97796.1| transcription termination factor Rho [Haemophilus influenzae
PittEE]
gi|229810477|gb|EEP46195.1| transcription termination factor Rho [Haemophilus influenzae
7P49H1]
gi|229812131|gb|EEP47823.1| transcription termination factor Rho [Haemophilus influenzae
6P18H1]
gi|260092161|gb|EEW76105.1| transcription termination factor Rho [Haemophilus influenzae RdAW]
gi|309972544|gb|ADO95745.1| Transcription termination factor Rho [Haemophilus influenzae R2846]
Length = 420
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ +SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFKRSGTRKEDLLTTADELQKMWILRKIL 388
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|119475468|ref|ZP_01615821.1| transcription termination factor Rho [marine gamma proteobacterium
HTCC2143]
gi|119451671|gb|EAW32904.1| transcription termination factor Rho [marine gamma proteobacterium
HTCC2143]
Length = 419
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDISGDGVLEILQDGFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ +VN +PE S+N+ LF+NLTPL P + +LE S E++TGRIID
Sbjct: 104 PKDGERYFALLKVSEVNYTQPEQSRNKVLFENLTPLFPDERCVLEAGNGSTEDLTGRIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKG RGL+VA PK+GK+++LQ IA +I N+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 164 LAAPIGKGVRGLIVAPPKAGKTLMLQSIAQSIVRNNPECYVIVLLIDERPEEVTDMQRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
R EV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNT++P+SGK
Sbjct: 224 RAEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTIVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+R++AE+RVYPAIN+ +SGTRREELL +D+LQ++W+LRKLL+S+
Sbjct: 344 HLDRKIAERRVYPAINIRRSGTRREELLTSEDELQRMWILRKLLHSM 390
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 144/283 (50%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF------------------ 430
++++ R RKQ+++F+I K+ K GE I GDG LE+L D GF
Sbjct: 23 IDNIARQRKQDIIFSILKRHAKSGEDISGDGVLEILQDGFGFLRSADCSYLAGPDDIYVS 82
Query: 431 ----------------GFLR--SQGSNYMA---SSDDIYLSPSQIRRFNLHTGI--LWKG 467
G +R G Y A S+ Y P Q R L + L+
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVSEVNYTQPEQSRNKVLFENLTPLFPD 142
Query: 468 EIRVPKNGE--------RYFALLK-----IKKVNVASPKSGKSIILQHIAHAITTNHSEA 514
E V + G R L ++ + VA PK+GK+++LQ IA +I N+ E
Sbjct: 143 ERCVLEAGNGSTEDLTGRIIDLAAPIGKGVRGLIVAPPKAGKTLMLQSIAQSIVRNNPEC 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSVR EV+ASTFDEP
Sbjct: 203 YVIVLLIDERPEEVTDMQRSVRAEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT++P+SGKVLTGGVD++AL+RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTIVPSSGKVLTGGVDAHALERPKRFFGAAR 305
>gi|365833938|ref|ZP_09375389.1| transcription termination factor Rho [Hafnia alvei ATCC 51873]
gi|364570587|gb|EHM48191.1| transcription termination factor Rho [Hafnia alvei ATCC 51873]
Length = 442
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 67 KSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 126
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++D
Sbjct: 127 PKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 186
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEMQR V
Sbjct: 187 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCTLMVLLIDERPEEVTEMQRLV 246
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 247 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 306
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 307 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 366
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 367 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHPM 413
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 200 VAPPKAGKTMLLQNIAQSIAYNHPDCTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 259
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 260 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 319
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 320 PKRFFGAAR 328
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 43 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDI 102
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 103 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKIL 155
>gi|289664843|ref|ZP_06486424.1| transcription termination factor Rho [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289671089|ref|ZP_06492164.1| transcription termination factor Rho [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 426
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 298/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SK + LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 351 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 398
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 34 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 93
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 94 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRF 153
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 154 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 213
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 214 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 273
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 274 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 313
>gi|419839551|ref|ZP_14362958.1| transcription termination factor Rho [Haemophilus haemolyticus
HK386]
gi|386909411|gb|EIJ74086.1| transcription termination factor Rho [Haemophilus haemolyticus
HK386]
Length = 420
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ +SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFKRSGTRKEDLLTTPDELQKMWILRKIL 388
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>gi|332534397|ref|ZP_08410237.1| transcription termination factor Rho [Pseudoalteromonas
haloplanktis ANT/505]
gi|359440205|ref|ZP_09230129.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20429]
gi|392536322|ref|ZP_10283459.1| transcription termination factor Rho [Pseudoalteromonas arctica A
37-1-2]
gi|332036131|gb|EGI72606.1| transcription termination factor Rho [Pseudoalteromonas
haloplanktis ANT/505]
gi|358038040|dbj|GAA66378.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20429]
Length = 419
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 304/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKGGENIFGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH + +ER SKE+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGLLVA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLLVAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AE+RV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAERRVFPAIDFNRSGTRREELLTKPDELQKLWILRKIVHDMS 391
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++FAI K K GE IFG G LE+L DGFG
Sbjct: 6 LKDKSIKELVDLAESMGLE--NVARLRKQDIIFAILKSHAKGGENIFGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|90415273|ref|ZP_01223207.1| transcription termination factor Rho [gamma proteobacterium
HTCC2207]
gi|90332596|gb|EAS47766.1| transcription termination factor Rho [marine gamma proteobacterium
HTCC2207]
Length = 419
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 309/348 (88%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K G+ I+GDG LE+LPDGFGFLRS G++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKGGDDIYGDGVLEILPDGFGFLRSAGASYLAGPDDIYVSPSQIRRFNLRTGDGIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFA+LK+ ++N + PE ++++ LF+NLTPL P + L LE S E++TGRII
Sbjct: 103 PPKDGERYFAMLKVDEINLDAPENARHKILFENLTPLFPDQRLTLEAGNGSSEDLTGRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL++PIGKGQRGL+VA PK+GK+I++Q+IA +I N+ E I+IV+LIDERPEEVTEMQR+
Sbjct: 163 DLVSPIGKGQRGLIVAPPKAGKTIMMQNIAQSIIRNNPECIIIVLLIDERPEEVTEMQRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEP RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVIASTFDEPPTRHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARNIE GGSL+IIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNIEHGGSLSIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+ L+R++AEKRVYP+IN+ +SGTRRE+LL+ +D+LQ++W+LRKLL+ +
Sbjct: 343 LILDRKIAEKRVYPSINIRRSGTRREDLLMDEDELQRVWILRKLLHDM 390
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA +I N+ E I+IV+LIDERPEEVTEMQR+VRGEVIASTFDEP
Sbjct: 177 VAPPKAGKTIMMQNIAQSIIRNNPECIIIVLLIDERPEEVTEMQRTVRGEVIASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 88/110 (80%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
++++ R RKQ+++FA+ KK K G+ I+GDG LE+LPDGFGFLRS G++Y+A DDIY+S
Sbjct: 23 LDNLARSRKQDIIFALLKKHAKGGDDIYGDGVLEILPDGFGFLRSAGASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK+GERYFA+LK+ ++N+ +P++ + IL
Sbjct: 83 PSQIRRFNLRTGDGIAGKIRPPKDGERYFAMLKVDEINLDAPENARHKIL 132
>gi|402701601|ref|ZP_10849580.1| transcription termination factor Rho [Pseudomonas fragi A22]
Length = 419
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTVRMKMEIGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I+ N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNISRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I+ N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNISRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|84625714|ref|YP_453086.1| transcription termination factor Rho [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|122879338|ref|YP_202942.6| transcription termination factor Rho [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|84369654|dbj|BAE70812.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 426
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 298/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SK + LF+NLTPL P++ LER S E+ITGRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRFRLERGDGSTEDITGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E MIV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLT+IATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTVIATALVETGSKMDEVIYEEFKGTGNSE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+ EKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 351 VHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 398
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 34 VARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 93
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 94 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRF 153
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH E MI
Sbjct: 154 RLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMI 213
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 214 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 273
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 274 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 313
>gi|119469630|ref|ZP_01612499.1| transcription termination factor Rho [Alteromonadales bacterium
TW-7]
gi|359448962|ref|ZP_09238471.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20480]
gi|392539852|ref|ZP_10286989.1| transcription termination factor Rho [Pseudoalteromonas marina
mano4]
gi|119446877|gb|EAW28148.1| transcription termination factor Rho [Alteromonadales bacterium
TW-7]
gi|358045225|dbj|GAA74720.1| transcription termination factor Rho [Pseudoalteromonas sp.
BSi20480]
Length = 419
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 304/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKGGENIFGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH + +ER SKE+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGLLVA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLLVAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AE+RV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAERRVFPAIDFNRSGTRREELLTKPDELQKLWILRKIVHEMS 391
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++F I K K GE IFG G LE+L DGFG
Sbjct: 6 LKDKSIKELVNLAESMGLE--NVARLRKQDIIFTILKSHAKGGENIFGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|119776349|ref|YP_929089.1| transcription termination factor Rho [Shewanella amazonensis SB2B]
gi|119768849|gb|ABM01420.1| transcription termination factor Rho [Shewanella amazonensis SB2B]
Length = 420
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/345 (71%), Positives = 298/345 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQ+RRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGGGVLEILQDGFGFLRSADGSYLAGPDDIYVSPSQVRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+N+ LF+NLTPLH ++ L +ER S E+IT RI+
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPEISRNKILFENLTPLHAEERLRMERGNGSTEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I+ N+ E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLCSPIGKGQRGLIVAPPKAGKTMLLQNIAQSISYNNPEVVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VHGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVIYEEFKGTGNQE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L
Sbjct: 343 LHLSRKAAEKRVFPAIDFNRSGTRREEKLTTSDELQKMWILRKIL 387
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 154/304 (50%), Gaps = 85/304 (27%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG---------- 419
N LK+ + ++A ++++LE ++ R RKQ+++F+I K K GE IFG
Sbjct: 4 NELKNMSIADLVALAESMNLE--NMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDG 61
Query: 420 -------DGSLEVLPDGFGFLRSQ---------------------GSNYMA--SSDDIYL 449
DGS PD SQ G Y A +++
Sbjct: 62 FGFLRSADGSYLAGPDDIYVSPSQVRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNF 121
Query: 450 SPSQIRR----FNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPK 493
+I R F T + + +R+ + NG +I + + VA PK
Sbjct: 122 DKPEISRNKILFENLTPLHAEERLRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPPK 181
Query: 494 SGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----- 548
+GK+++LQ+IA +I+ N+ E +++V+LIDERPEEVTEMQR V GEVIASTFDEPA
Sbjct: 182 AGKTMLLQNIAQSISYNNPEVVLMVLLIDERPEEVTEMQRLVHGEVIASTFDEPASRHVQ 241
Query: 549 ----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFF 586
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFF
Sbjct: 242 VAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFF 301
Query: 587 GAAR 590
GAAR
Sbjct: 302 GAAR 305
>gi|284006575|emb|CBA71836.1| transcription termination factor [Arsenophonus nasoniae]
Length = 419
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIANNYPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTLPDELQKMWILRKIIHPM 390
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIANNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ +S IL
Sbjct: 124 PENARSKIL 132
>gi|33520025|ref|NP_878857.1| transcription termination factor Rho [Candidatus Blochmannia
floridanus]
gi|33504371|emb|CAD83264.1| transcription termination factor Rho [Candidatus Blochmannia
floridanus]
Length = 419
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/347 (70%), Positives = 301/347 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KTGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNDVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I+ N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSISHNYPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
GEVIASTFDEPA RHVQV+EMV+EKAKRLVE KKDVI+LLDSITRLARAYNT+ P+SGK
Sbjct: 224 HGEVIASTFDEPASRHVQVSEMVIEKAKRLVEHKKDVIVLLDSITRLARAYNTIAPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNMEEGGSLTIVATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL D+LQKIW+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTPDELQKIWILRKIIHPM 390
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 148/304 (48%), Gaps = 83/304 (27%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERI------------ 417
NL K +P+ T + + ++ R+RKQ+++FAIFK+ K GE I
Sbjct: 2 NLTKLKNIPVSELVTLGESMGLENLARMRKQDIIFAIFKQHAKTGEDIFGDGVLEILQDG 61
Query: 418 FG-----DGSLEVLPDGFGFLRSQ---------------------GSNYMA---SSDDIY 448
FG D S PD SQ G Y A +D Y
Sbjct: 62 FGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNDVNY 121
Query: 449 LSPSQIRR---FNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPK 493
P R F T + +R+ + NG ++ + + VA PK
Sbjct: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181
Query: 494 SGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----- 548
+GK+++LQ+IA +I+ N+ + +++V+LIDERPEEVTEMQR V GEVIASTFDEPA
Sbjct: 182 AGKTMLLQNIAQSISHNYPDCVLMVLLIDERPEEVTEMQRLVHGEVIASTFDEPASRHVQ 241
Query: 549 ----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFF 586
L + +LARAYNT+ P+SGKVLTGGVD+NAL RPKRFF
Sbjct: 242 VSEMVIEKAKRLVEHKKDVIVLLDSITRLARAYNTIAPSSGKVLTGGVDANALHRPKRFF 301
Query: 587 GAAR 590
GAAR
Sbjct: 302 GAAR 305
>gi|27905006|ref|NP_778132.1| transcription termination factor Rho [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|32699635|sp|Q89A22.1|RHO_BUCBP RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|27904404|gb|AAO27237.1| rranscription termination factor rho [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 419
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/349 (69%), Positives = 304/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ KVN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNKVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEM+R
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMRRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEP+ RHVQV+EMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPSSRHVQVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L R++AEKRV+PAI+ N+SGTR+EELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRKEELLTKSDELQKMWILRKIIHPMS 391
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEM+R V+GEV+ASTFDEP+
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMRRLVKGEVVASTFDEPS 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ KVN P++ +S IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNKVNYDKPENARSKIL 132
>gi|209693769|ref|YP_002261697.1| transcription termination factor Rho [Aliivibrio salmonicida
LFI1238]
gi|208007720|emb|CAQ77833.1| transcription termination factor rho [Aliivibrio salmonicida
LFI1238]
Length = 419
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDTIGGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ VN ++P+ ++N+ LF+NLTPLH L +ER S E+IT RI+
Sbjct: 103 PPKDGERYFALLKVNAVNYDRPDNARNKILFENLTPLHANDRLRMERGNGSTEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I N+ E ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAHNYPECELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGG+D+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGIDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKR++PAI+ N+SGTRREELL + D+LQK+W+LRK+++ +
Sbjct: 343 LHLNRKIAEKRIFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPM 390
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I N+ E ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAHNYPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGG+D+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGIDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++A +++ LE ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNRPVSDLVALGESLGLE--NLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS +Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ VN
Sbjct: 64 FLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDTIGGKIRPPKDGERYFALLKVNAVNYDR 123
Query: 492 PKSGKSIIL 500
P + ++ IL
Sbjct: 124 PDNARNKIL 132
>gi|433679650|ref|ZP_20511359.1| Transcription termination factor rho [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430815250|emb|CCP41957.1| Transcription termination factor rho [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 617
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 242 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 301
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P+K LER S E+I+GRI+
Sbjct: 302 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRKRFTLERGNGSSEDISGRIL 361
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + MIV+LIDERPEEVTEMQR+
Sbjct: 362 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQRT 421
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 422 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 481
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 482 KVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 541
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 542 VHLNRRIAEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 589
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 157/282 (55%), Gaps = 83/282 (29%)
Query: 392 NSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSP 451
+ V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SP
Sbjct: 223 DGVARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISP 282
Query: 452 SQIRRFNLHTGILWKGEIRVPK--------------NGE------------RYFALLKIK 485
SQIRRFNL TG G IR PK NGE AL K
Sbjct: 283 SQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRK 342
Query: 486 KVN------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
+ V+ PK+GK++++Q +A AITTNH +
Sbjct: 343 RFTLERGNGSSEDISGRILDLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVH 402
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
MIV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 403 MIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVIL 462
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN V+P+SGKVL+GGVD+NAL RPKRFFGAAR
Sbjct: 463 LDSITRLARAYNNVVPSSGKVLSGGVDANALHRPKRFFGAAR 504
>gi|345870805|ref|ZP_08822755.1| transcription termination factor Rho [Thiorhodococcus drewsii AZ1]
gi|343921274|gb|EGV31995.1| transcription termination factor Rho [Thiorhodococcus drewsii AZ1]
Length = 418
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/349 (69%), Positives = 304/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD + G+I
Sbjct: 42 QAKRGEDIYGDGVLEILSDGFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ +N ++PE +K++ LF+N TPL ++ L LE S E+IT R
Sbjct: 102 RPPKDGERYFALLKVNDINFDRPENAKSKILFENFTPLFAQERLTLEIGNGSTEDITART 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGL+V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDLVAPIGKGQRGLIVSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+H++RR+AE+R++P+IN+N+SGTRREELL+ +LQK+W+LRK+L+ +
Sbjct: 342 EIHMDRRIAERRIFPSININRSGTRREELLMGPAELQKMWILRKILHPM 390
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 177 VSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMSRSVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++A Q+ +E+ V R RKQ+L+FAI K + K GE I+GDG LE+L DGFG
Sbjct: 6 LKKTPVPDLVALAQS--MEIEGVGRSRKQDLIFAILKAQAKRGEDIYGDGVLEILSDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF L TG G+IR PK+GERYFALLK+ +N
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVNDINFDR 123
Query: 492 PKSGKSIIL 500
P++ KS IL
Sbjct: 124 PENAKSKIL 132
>gi|399543538|ref|YP_006556846.1| transcription termination factor Rho [Marinobacter sp. BSs20148]
gi|399158870|gb|AFP29433.1| Transcription termination factor Rho [Marinobacter sp. BSs20148]
Length = 420
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/360 (67%), Positives = 307/360 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEDIYGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N +KP+ ++N+ LF+NLTPL P + + LE S E+++ R++D
Sbjct: 104 PKDGERYFALLKVSEINFDKPDNARNKILFENLTPLFPDERMHLEAGNGSTEDLSSRVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+APIGKGQRGL+V+ PK+GK++++Q IA +IT NH E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LVAPIGKGQRGLIVSPPKAGKTLLMQSIAQSITRNHPECHIIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEVIASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVIASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARN+EEGGSLTI+ATAL+ TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNVEEGGSLTIVATALVNTGSKMDEVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R++AEKR YPAIN+ SGTRRE+LL+ + +QK+W+LRKLL+S+ + + K
Sbjct: 344 HLDRKIAEKRTYPAINIRSSGTRREDLLMSEADIQKVWILRKLLHSMDDDTAAIEFLLDK 403
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q IA +IT NH E +IV+LIDERPEEVTEMQR+VRGEVIASTFDEP
Sbjct: 177 VSPPKAGKTLLMQSIAQSITRNHPECHIIVLLIDERPEEVTEMQRTVRGEVIASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK MP +L Q + L +++ R RKQ+++F I K+ K GE I+GDG LE+L DGFG
Sbjct: 6 LKQNSMPELLEIAQEMGL--DNLARSRKQDVIFTILKRHAKGGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVSEINFDK 123
Query: 492 PKSGKSIIL 500
P + ++ IL
Sbjct: 124 PDNARNKIL 132
>gi|372269330|ref|ZP_09505378.1| transcription termination factor Rho [Alteromonas sp. S89]
Length = 419
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/362 (69%), Positives = 307/362 (84%), Gaps = 2/362 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+G+G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGEGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +N +KPE ++N+ LF+NLTPL P L LE S E++ GRII
Sbjct: 103 PPKEGERYFALLKVSDINFDKPENARNKILFENLTPLFPNDRLGLECGNGSSEDLIGRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGL+VA PK+GK+I+LQ++A AIT N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLVAPIGKGQRGLIVAPPKAGKTIMLQNMAQAITRNNPECHLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNT +P+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTTVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 283 KVLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALVDTGSKMDEVIFEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+ L+R++AEKRVYPAIN+ +SGTRREELL+ + +LQ++W+LRKLL+ M + F I
Sbjct: 343 LQLDRKIAEKRVYPAINVRRSGTRREELLMPEGELQRVWILRKLLHD--MEDLAATEFLI 400
Query: 362 KR 363
+
Sbjct: 401 DK 402
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ++A AIT N+ E +IV+LIDERPEEVTEMQRSVRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNMAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNT +P+SGKVLTGGVD++AL+R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTTVPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F I K+ K GE I+G+G LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENLARSRKQDIIFNILKRHAKSGEDIYGEGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDSISGKIRPPKEGERYFALLKVSDINFDKPENARNKIL 132
>gi|170718541|ref|YP_001783395.1| transcription termination factor Rho [Haemophilus somnus 2336]
gi|168826670|gb|ACA32041.1| transcription termination factor Rho [Haemophilus somnus 2336]
Length = 420
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGILEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER + E++T RI+
Sbjct: 104 PPKEGERYFALLKVDRVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGATEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIIHNYPECELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 224 VKGEVIASTFDEPAARHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPPSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L +
Sbjct: 344 LHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKILNPM 391
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 171/293 (58%), Gaps = 83/293 (28%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNY 440
L E + + ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y
Sbjct: 14 LVELGEKQMGLENLARLRKQDIIFAILKQHAKSGEDIFGGGILEILPDGFGFLRSADSSY 73
Query: 441 MASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------ 488
+A DDIY+SPSQIRRFNL TG +G+IR PK GERYFALLK+ +VN
Sbjct: 74 LAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDRVNDDKPEVSRSKIL 133
Query: 489 -------------------------------VASP-------------KSGKSIILQHIA 504
+ASP K+GK+++LQ+IA
Sbjct: 134 FENLTPLHANSRLRMERGNGATEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIA 193
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------- 548
+I N+ E +IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 194 QSIIHNYPECELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPAARHVQVAEMVIEKAKR 253
Query: 549 -----------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 254 SVEHKKDVVILLDSITRLARAYNTVTPPSGKILSGGVDANALHRPKRFFGAAR 306
>gi|440729755|ref|ZP_20909871.1| transcription termination factor rho protein [Xanthomonas
translucens DAR61454]
gi|440380633|gb|ELQ17194.1| transcription termination factor rho protein [Xanthomonas
translucens DAR61454]
Length = 426
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P+K LER S E+I+GRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRKRFTLERGNGSSEDISGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + MIV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 351 VHLNRRIAEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 398
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH + MIV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 185 VSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 244
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+NAL R
Sbjct: 245 ARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDANALHR 304
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 305 PKRFFGAAR 313
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 76/109 (69%)
Query: 392 NSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSP 451
+ V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SP
Sbjct: 32 DGVARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISP 91
Query: 452 SQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SQIRRFNL TG G IR PK+GERYFAL + +N ++ K+ +L
Sbjct: 92 SQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVL 140
>gi|91791811|ref|YP_561462.1| transcription termination factor Rho [Shewanella denitrificans
OS217]
gi|91713813|gb|ABE53739.1| transcription termination factor Rho [Shewanella denitrificans
OS217]
Length = 421
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 300/347 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDSIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE SKN+ LF+NLTPLH ++ L +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVSEVNFDKPESSKNKILFENLTPLHAEERLRMERGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + ++IV+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNIAQSITYNNPDVVLIVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R+ AEKRV+PAI+ N+SGTRREE L ++LQK+W+LRK+L+ +
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTTEELQKMWILRKILHPM 390
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 157/303 (51%), Gaps = 87/303 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + +++ +T+ LE ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTPISDLVSLAETMKLE--NMARTRKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDG-------------------FGFLR--SQGSNYMA-------SSDD 446
DGS PD FG +R +G Y A + D
Sbjct: 64 FLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDSIFGKIRPPKEGERYFALLKVSEVNFDK 123
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKS 494
S ++I NL T + + +R+ + NG +I + + VA PK+
Sbjct: 124 PESSKNKILFENL-TPLHAEERLRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPPKA 182
Query: 495 GKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------ 548
GK+++LQ+IA +IT N+ + ++IV+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 183 GKTLLLQNIAQSITYNNPDVVLIVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQV 242
Query: 549 ---------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFG 587
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFG
Sbjct: 243 AEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFG 302
Query: 588 AAR 590
AAR
Sbjct: 303 AAR 305
>gi|116515296|ref|YP_802925.1| transcription termination factor Rho [Buchnera aphidicola BCc]
gi|58384656|gb|AAW72676.1| transcription termination factor rho [Buchnera aphidicola (Cinara
cedri)]
gi|116257150|gb|ABJ90832.1| transcription termination factor [Buchnera aphidicola BCc]
Length = 420
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 SKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ KVN ++PE ++++ LF+NLTPLH L +ER SKE++T R++
Sbjct: 103 PPKEGERYFALLKVNKVNYDQPENARSKILFENLTPLHANSRLQMERGNGSKEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V GEV+ASTFDEPA RHVQVAEMV+E+AKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VNGEVVASTFDEPASRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN++EGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVKEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+ L R++AEKRV+PAI+ N+SGTRREELL ++LQK+W+LRK+++ +
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRREELLTVPEELQKMWILRKIIHPM 390
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVNGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ + I LE ++ R+RKQ+++F+I K+ +K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTSVSKLIILGEKIGLE--NLARMRKQDIIFSILKQHSKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ KVN
Sbjct: 64 FLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNKVNYDQ 123
Query: 492 PKSGKSIIL 500
P++ +S IL
Sbjct: 124 PENARSKIL 132
>gi|421161446|ref|ZP_15620400.1| transcription termination factor Rho [Pseudomonas aeruginosa ATCC
25324]
gi|404539954|gb|EKA49391.1| transcription termination factor Rho [Pseudomonas aeruginosa ATCC
25324]
Length = 419
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/351 (70%), Positives = 304/351 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNERMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEE KGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEECKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
L+R++AEKRV+PAIN+N+SGTRREELL +D+LQ++W+LRK+L+ + S
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTSEDELQRMWILRKILHPMDEIS 394
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>gi|422638812|ref|ZP_16702242.1| transcription termination factor Rho [Pseudomonas syringae Cit 7]
gi|330951206|gb|EGH51466.1| transcription termination factor Rho [Pseudomonas syringae Cit 7]
Length = 419
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+ PSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVLPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTIRMKMEAGNGSPEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ K+ K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+
Sbjct: 23 IENMARSRKQDVIFSLLKRHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVL 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|422021105|ref|ZP_16367619.1| transcription termination factor Rho [Providencia sneebia DSM
19967]
gi|414100010|gb|EKT61643.1| transcription termination factor Rho [Providencia sneebia DSM
19967]
Length = 419
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIG+GQRGL+VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVIASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQEELQKMWILRKIIHPM 390
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA I N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ +S IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARSKIL 132
>gi|126666611|ref|ZP_01737589.1| transcription termination factor Rho [Marinobacter sp. ELB17]
gi|126628999|gb|EAZ99618.1| transcription termination factor Rho [Marinobacter sp. ELB17]
Length = 410
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/361 (67%), Positives = 307/361 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 33 AKGGEDIYGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIR 92
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ ++N +KP+ ++N+ LF+NLTPL P + + LE S E+++ R++
Sbjct: 93 PPKDGERYFALLKVSEINFDKPDNARNKILFENLTPLFPDERMHLEAGNGSTEDLSSRVL 152
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGL+V+ PK+GK++++Q IA +IT NH E +IV+LIDERPEEVTEMQR+
Sbjct: 153 DLVAPIGKGQRGLIVSPPKAGKTLLMQSIAQSITRNHPECHIIVLLIDERPEEVTEMQRT 212
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 213 VRGEVIASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 272
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARN+EEGGSLTI+ATAL+ TGS+MD+VIYEEFKGTGNME
Sbjct: 273 KVLTGGVDAHALEKPKRFFGAARNVEEGGSLTILATALVNTGSKMDEVIYEEFKGTGNME 332
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL+R++AEKR YPAIN+ SGTRRE+LL+ + +QK+W+LRKLL+S+ + +
Sbjct: 333 IHLDRKIAEKRTYPAINIRGSGTRREDLLMSEADIQKVWILRKLLHSMDDDTAAIEFLLD 392
Query: 362 K 362
K
Sbjct: 393 K 393
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q IA +IT NH E +IV+LIDERPEEVTEMQR+VRGEVIASTFDEP
Sbjct: 167 VSPPKAGKTLLMQSIAQSITRNHPECHIIVLLIDERPEEVTEMQRTVRGEVIASTFDEPP 226
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 227 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 286
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 287 PKRFFGAAR 295
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 89/124 (71%), Gaps = 2/124 (1%)
Query: 377 MPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQ 436
MP +L Q + L +++ R RKQ+++F I K+ K GE I+GDG LE+L DGFGFLRS
Sbjct: 1 MPELLEIAQEMGL--DNLARSRKQDVIFTILKRHAKGGEDIYGDGVLEILQDGFGFLRSA 58
Query: 437 GSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
++Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N P + +
Sbjct: 59 DASYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRPPKDGERYFALLKVSEINFDKPDNAR 118
Query: 497 SIIL 500
+ IL
Sbjct: 119 NKIL 122
>gi|336233461|ref|YP_004590207.1| transcription termination factor [Buchnera aphidicola (Cinara
tujafilina)]
gi|335345402|gb|AEH39948.1| transcription termination factor [Buchnera aphidicola (Cinara
tujafilina)]
Length = 419
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/349 (70%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 SKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN ++PE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDRPENARNKILFENLTPLHANSRLKMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPECVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V GEVIASTFDEPA RHVQV+EMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VNGEVIASTFDEPAARHVQVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+LTGGVD+NAL RPKRFFGAARN++EGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KILTGGVDANALHRPKRFFGAARNVKEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L R++AEKRV+PAI+ N+SGTRREELL ++LQK+W+LRK+++ ++
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRREELLTIPEELQKMWILRKIIHPMS 391
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 178/302 (58%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ ++I LE ++ R+RKQ+++F+I K+ +K GE IFGDG LE+L DGFG
Sbjct: 6 LKNKSVSKLIFLGESIGLE--NLARMRKQDIIFSILKQHSKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL---------- 481
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFAL
Sbjct: 64 FLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDR 123
Query: 482 ---------------------LKIKKVN-------------------------VASPKSG 495
LK+++ N VA PK+G
Sbjct: 124 PENARNKILFENLTPLHANSRLKMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH E +++V+LIDERPEEVTEMQR V GEVIASTFDEPA
Sbjct: 184 KTMLLQNIAQSIAYNHPECVLMVLLIDERPEEVTEMQRLVNGEVIASTFDEPAARHVQVS 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|400406290|ref|YP_006589038.1| transcription termination factor Rho [secondary endosymbiont of
Heteropsylla cubana]
gi|400364543|gb|AFP85610.1| transcription termination factor Rho [secondary endosymbiont of
Heteropsylla cubana]
Length = 419
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG+G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGNGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L + R S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMGRGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + ++IV+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCLLIVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVI STFDEPA RH+QVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVITSTFDEPASRHIQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + ++IV+LIDERPEEVTEMQR V+GEVI STFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCLLIVLLIDERPEEVTEMQRLVKGEVITSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHIQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 92/131 (70%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
NL + MP+ T ++ ++ R+RKQ+++FAI K+ K GE IFG+G LE+L DG
Sbjct: 2 NLTELKNMPVSELVTLGENMGQENLARIRKQDIIFAILKQHAKSGEDIFGNGVLEILQDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 62 FGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNY 121
Query: 490 ASPKSGKSIIL 500
P++ ++ IL
Sbjct: 122 DKPENARNKIL 132
>gi|33152037|ref|NP_873390.1| transcription termination factor Rho [Haemophilus ducreyi 35000HP]
gi|33148259|gb|AAP95779.1| transcription termination factor Rho [Haemophilus ducreyi 35000HP]
Length = 420
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/345 (71%), Positives = 298/345 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGILEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +E S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMECGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLAAPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 224 VRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPVSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ N+SGTR+E LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFNRSGTRKEGLLTSPDELQKMWILRKIL 388
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 178 VAPPKAGKTVLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P SGK+L+GGVD+NAL R
Sbjct: 238 TRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPVSGKILSGGVDANALHR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 83/110 (75%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+S
Sbjct: 24 LENLARLRKQDIIFAILKQHAKSGEDIFGQGILEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG +G+IR PK GERYFALLK+ VN P+ +S IL
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKIL 133
>gi|409204106|ref|ZP_11232305.1| transcription termination factor Rho [Pseudoalteromonas
flavipulchra JG1]
Length = 419
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 305/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+G G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF+L TGD + G IR
Sbjct: 44 KSGENIYGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDTISGLIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTP+H + +++ER S E+IT R++D
Sbjct: 104 PKDGERYFALLKVNEVNFDKPENSRTKILFENLTPIHANERMVMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQR L+VA PK+GK+++LQ+IA +IT N+ +A ++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGKGQRALIVAPPKAGKTMLLQNIAQSITYNNPDATLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SGK
Sbjct: 224 QGEVIASTFDEPANRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 344 HLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHEMS 391
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT N+ +A ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITYNNPDATLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 NRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++FAI K K GE I+G G LE+L DGFG
Sbjct: 6 LKDKSINELVKLAESMGLE--NVARLRKQDIIFAILKAHAKSGENIYGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF+L TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDTISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|358448022|ref|ZP_09158529.1| transcription termination factor Rho [Marinobacter manganoxydans
MnI7-9]
gi|357227707|gb|EHJ06165.1| transcription termination factor Rho [Marinobacter manganoxydans
MnI7-9]
Length = 420
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/360 (67%), Positives = 308/360 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 44 KSGEDIYGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N +KP+ ++N+ LF+NLTPL P + L+LE S E+++ R++D
Sbjct: 104 PKDGERYFALLKVSEINFDKPDNARNKILFENLTPLFPDERLMLEAGNGSTEDLSSRVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+APIGKGQRGL+V+ PK+GK++++Q IA +IT N+ E ++V+LIDERPEEVTEMQR+V
Sbjct: 164 LVAPIGKGQRGLIVSPPKAGKTLLMQSIAQSITRNNPECHVMVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEVIASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVIASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARN+EEGGSLTI+ATAL+ TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNVEEGGSLTILATALVNTGSKMDEVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R++AEKR YPAIN+ SGTRRE+LL+ + +Q++W+LRKLL+S+ + + K
Sbjct: 344 HLDRKIAEKRTYPAINIRSSGTRREDLLMSEADIQRVWILRKLLHSMDDDTAAIEFLLDK 403
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q IA +IT N+ E ++V+LIDERPEEVTEMQR+VRGEVIASTFDEP
Sbjct: 177 VSPPKAGKTLLMQSIAQSITRNNPECHVMVLLIDERPEEVTEMQRTVRGEVIASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P +L Q + L +++ R RKQ+++F I KK K GE I+GDG LE+L DGFG
Sbjct: 6 LKQKSVPELLDIAQEMGL--DNLARSRKQDVIFTILKKHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKDGERYFALLKVSEINFDK 123
Query: 492 PKSGKSIIL 500
P + ++ IL
Sbjct: 124 PDNARNKIL 132
>gi|24372001|ref|NP_716043.1| transcription termination factor Rho [Shewanella oneidensis MR-1]
gi|24345862|gb|AAN53488.1|AE015489_1 transcription termination factor Rho [Shewanella oneidensis MR-1]
Length = 421
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/351 (70%), Positives = 300/351 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH ++ + +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIENGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L + S
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTNPDELQKMWILRKILNPMDEVS 394
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 154/302 (50%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + +++ + + LE ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTPISDLVSLAENMKLE--NMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDGFGFLRSQGSNY-MASSDDIY---LSPSQIRRF------------- 457
DGS PD SQ + M + D I+ P + R+
Sbjct: 64 FLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVNFDK 123
Query: 458 --NLHTGILWKG--------EIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
N IL++ +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +IT N+ E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|422619667|ref|ZP_16688355.1| transcription termination factor Rho [Pseudomonas syringae pv.
japonica str. M301072]
gi|330900035|gb|EGH31454.1| transcription termination factor Rho [Pseudomonas syringae pv.
japonica str. M301072]
Length = 419
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 301/347 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINYDRPENAKNKILFENLTPLFPTIRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LR L + +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTADDELQRMWILRNLRHPM 390
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ K+ K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+S
Sbjct: 23 IENMARSRKQDVIFSLLKRHAKSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINYDRPENAKNKIL 132
>gi|114561646|ref|YP_749159.1| transcription termination factor Rho [Shewanella frigidimarina
NCIMB 400]
gi|114332939|gb|ABI70321.1| transcription termination factor Rho [Shewanella frigidimarina
NCIMB 400]
Length = 420
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/351 (70%), Positives = 301/351 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDSIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH ++ L +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVSEVNFDKPESSRNKILFENLTPLHAEERLRMERGNGSTEDITSRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNIAQSITYNNPDVVLMVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R+ AEKRV+PAI+ N+SGTRREE L ++LQK+W+LRK+L+ + S
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTPEELQKMWILRKILHPMDEVS 394
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 156/302 (51%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + +++ ++++LE ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTPISDLVSLAESMNLE--NMARTRKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDG-------------------FGFLR--SQGSNYMA---SSDDIYLS 450
DGS PD FG +R +G Y A S+ +
Sbjct: 64 FLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDSIFGKIRPPKEGERYFALLKVSEVNFDK 123
Query: 451 PSQIRR---FNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
P R F T + + +R+ + NG +I + + VA PK+G
Sbjct: 124 PESSRNKILFENLTPLHAEERLRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +IT N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQNIAQSITYNNPDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|113968753|ref|YP_732546.1| transcription termination factor Rho [Shewanella sp. MR-4]
gi|114049103|ref|YP_739653.1| transcription termination factor Rho [Shewanella sp. MR-7]
gi|117918865|ref|YP_868057.1| transcription termination factor Rho [Shewanella sp. ANA-3]
gi|113883437|gb|ABI37489.1| transcription termination factor Rho [Shewanella sp. MR-4]
gi|113890545|gb|ABI44596.1| transcription termination factor Rho [Shewanella sp. MR-7]
gi|117611197|gb|ABK46651.1| transcription termination factor Rho [Shewanella sp. ANA-3]
Length = 421
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/351 (70%), Positives = 300/351 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH ++ + +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 QGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIENGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L + S
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTPDELQKMWILRKILNPMDEVS 394
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 154/302 (50%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + +++ + + LE ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTPISDLVSLAENMKLE--NMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDGFGFLRSQGSNY-MASSDDIY---LSPSQIRRF------------- 457
DGS PD SQ + M + D I+ P + R+
Sbjct: 64 FLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVNFDK 123
Query: 458 --NLHTGILWKG--------EIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
N IL++ +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +IT N+ E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|380511028|ref|ZP_09854435.1| transcription termination factor rho protein, partial [Xanthomonas
sacchari NCPPB 4393]
Length = 541
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 166 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 225
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P+K LER S E+I+GRI+
Sbjct: 226 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRKRFTLERGNGSSEDISGRIL 285
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 286 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 345
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 346 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 405
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 406 KVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 465
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRVYPAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 466 VHLNRRIAEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 513
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 157/282 (55%), Gaps = 83/282 (29%)
Query: 392 NSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSP 451
+ V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SP
Sbjct: 147 DGVARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISP 206
Query: 452 SQIRRFNLHTGILWKGEIRVPK--------------NGE------------RYFALLKIK 485
SQIRRFNL TG G IR PK NGE AL K
Sbjct: 207 SQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRK 266
Query: 486 KVN------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
+ V+ PK+GK++++Q +A AITTNH +
Sbjct: 267 RFTLERGNGSSEDISGRILDLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVH 326
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 327 LIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVIL 386
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN V+P+SGKVL+GGVD+NAL RPKRFFGAAR
Sbjct: 387 LDSITRLARAYNNVVPSSGKVLSGGVDANALHRPKRFFGAAR 428
>gi|392544087|ref|ZP_10291224.1| transcription termination factor Rho [Pseudoalteromonas piscicida
JCM 20779]
Length = 419
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 305/348 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+G G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF+L TGD + G IR
Sbjct: 44 KSGENIYGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDTIVGLIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTP+H + +++ER S E+IT R++D
Sbjct: 104 PKDGERYFALLKVNEVNFDKPENSRTKILFENLTPIHANERMVMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQR L+VA PK+GK+++LQ+IA +IT N+ +A ++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGKGQRALIVAPPKAGKTMLLQNIAQSITYNNPDATLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SGK
Sbjct: 224 QGEVIASTFDEPANRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 344 HLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHEMS 391
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT N+ +A ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITYNNPDATLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 NRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++FAI K K GE I+G G LE+L DGFG
Sbjct: 6 LKDKSINELVKLAESMGLE--NVARLRKQDIIFAILKAHAKSGENIYGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF+L TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDTIVGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|116621148|ref|YP_823304.1| transcription termination factor Rho [Candidatus Solibacter
usitatus Ellin6076]
gi|116224310|gb|ABJ83019.1| transcription termination factor Rho [Candidatus Solibacter
usitatus Ellin6076]
Length = 407
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/343 (70%), Positives = 299/343 (87%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LE LPDGFGFLR+ NY+ DD+Y+SPSQIRRF+L TGD + G+IR PK GE
Sbjct: 41 IFSEGVLECLPDGFGFLRAPEYNYLPGPDDVYVSPSQIRRFDLRTGDTISGQIRPPKEGE 100
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFAL+K+ +N E PE ++N+ FDNLTPL+P + L LE +K+N +GR++DL+ PI
Sbjct: 101 RYFALIKVDAINFEPPEEARNKIFFDNLTPLYPNERLKLE---TAKDNYSGRVMDLLTPI 157
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+V+ P++GK+++LQ IA+++TTNH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 158 GKGQRGLIVSPPRTGKTMLLQSIANSVTTNHPEVTLIVLLIDERPEEVTDMQRSVRGEVI 217
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNT++P SGKVL+GG
Sbjct: 218 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPPSGKVLSGG 277
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMDDVI+EEFKGTGNME+HLER+
Sbjct: 278 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIFEEFKGTGNMEIHLERK 337
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L +KRV+PAI++NKSGTR+EELL+ D+L ++W+LRK+L L+
Sbjct: 338 LVDKRVFPAIDINKSGTRKEELLLPKDELNRVWILRKVLNPLS 380
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 159/274 (58%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
LRKQEL+F I + + + IF +G LE LPDGFGFLR+ NY+ DD+Y+SPSQIRR
Sbjct: 21 LRKQELIFKILQTQAEKSGLIFSEGVLECLPDGFGFLRAPEYNYLPGPDDVYVSPSQIRR 80
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
F+L TG G+IR PK GERYFAL+K+ +N
Sbjct: 81 FDLRTGDTISGQIRPPKEGERYFALIKVDAINFEPPEEARNKIFFDNLTPLYPNERLKLE 140
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
V+ P++GK+++LQ IA+++TTNH E +IV+LIDE
Sbjct: 141 TAKDNYSGRVMDLLTPIGKGQRGLIVSPPRTGKTMLLQSIANSVTTNHPEVTLIVLLIDE 200
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+MQRSVRGEVI+STFDEPA L + +LA
Sbjct: 201 RPEEVTDMQRSVRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLA 260
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYNT++P SGKVL+GGVDSNALQRPKRFFGAAR
Sbjct: 261 RAYNTIVPPSGKVLSGGVDSNALQRPKRFFGAAR 294
>gi|167625799|ref|YP_001676093.1| transcription termination factor Rho [Shewanella halifaxensis
HAW-EB4]
gi|167355821|gb|ABZ78434.1| transcription termination factor Rho [Shewanella halifaxensis
HAW-EB4]
Length = 421
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/344 (71%), Positives = 298/344 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH ++ + +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVTEVNFDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITSRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ++A +IT N+ E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNMAQSITNNNPEVVLMVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTPDELQKMWILRKIL 387
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 154/302 (50%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + ++ Q D+++ ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTSISDLVQLAQ--DMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDGFGFLRSQGSNY-MASSDDIY---LSPSQIRRF------------- 457
DGS PD SQ + M + D I+ P + R+
Sbjct: 64 FLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVTEVNFDK 123
Query: 458 --NLHTGILWKG--------EIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
N IL++ +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHAEERMRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ++A +IT N+ E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQNMAQSITNNNPEVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|71278408|ref|YP_266944.1| transcription termination factor Rho [Colwellia psychrerythraea
34H]
gi|71144148|gb|AAZ24621.1| transcription termination factor Rho [Colwellia psychrerythraea
34H]
Length = 419
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/342 (71%), Positives = 301/342 (88%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRF++ TGD ++G+IR PK GE
Sbjct: 49 IFGGGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFSMRTGDTIQGKIRSPKKGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +VN ++PE ++N+ LF+NLTP+HP L R S E+IT RI+DL +PI
Sbjct: 109 RYFALLKVTEVNFDRPENTRNKILFENLTPIHPTDRFSLARGNGSTEDITARILDLASPI 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA PK+GK+++LQ+IA +I N+ +A ++V+LIDERPEEVTEMQR V+GEVI
Sbjct: 169 GKGQRGLIVAPPKAGKTLLLQNIAQSIAHNNPDAELMVLLIDERPEEVTEMQRLVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK+LTGG
Sbjct: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKILTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NAL RPKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+HL R+
Sbjct: 289 VDANALHRPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELHLSRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++EKRV+PAIN+N+SGTRREEL+ + D+LQK+W+LRK+++ +
Sbjct: 349 ISEKRVFPAININRSGTRREELITKPDELQKMWILRKIVHEM 390
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I N+ +A ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAHNNPDAELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGK+LTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKILTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 82/112 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
+++ ++ R RKQ+++FAI K + IFG G LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 MKLENLARTRKQDIIFAILKAHAEGDNDIFGGGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRF++ TG +G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 81 VSPSQIRRFSMRTGDTIQGKIRSPKKGERYFALLKVTEVNFDRPENTRNKIL 132
>gi|285019642|ref|YP_003377353.1| transcription termination factor rho protein [Xanthomonas
albilineans GPE PC73]
gi|283474860|emb|CBA17359.1| putative transcription termination factor rho protein [Xanthomonas
albilineans GPE PC73]
Length = 426
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 298/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P+K LER S E+I+GRI+
Sbjct: 111 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRKRFTLERGNGSSEDISGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRVYPAI++N+SGTRRE+LLI + LQKIW+LRKLL+ +
Sbjct: 351 VHLNRRIAEKRVYPAIDINRSGTRREDLLIDPELLQKIWILRKLLHPM 398
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 185 VSPPKAGKTMLMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 244
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVL+GGVD+NAL R
Sbjct: 245 ARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDANALHR 304
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 305 PKRFFGAAR 313
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 76/109 (69%)
Query: 392 NSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSP 451
+ V R RKQ+++FA+ K T+ GE + DG LE+LPDGFGFLR+ ++Y+A DD Y+SP
Sbjct: 32 DGVARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISP 91
Query: 452 SQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
SQIRRFNL TG G IR PK+GERYFAL + +N ++ K+ +L
Sbjct: 92 SQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVL 140
>gi|49088308|gb|AAT51555.1| PA5239, partial [synthetic construct]
Length = 420
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/351 (70%), Positives = 304/351 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + + +E S E++TGR+ID
Sbjct: 104 PKGGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNERMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA K+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPLKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
L+R++AEKRV+PAIN+N+SGTRREELL +D+LQ++W+LRK+L+ + S
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTSEDELQRMWILRKILHPMDEIS 394
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA K+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPLKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIIGKIRPPKGGERYFALLKVDSINFDRPENAKNKIL 132
>gi|152997987|ref|YP_001342822.1| transcription termination factor Rho [Marinomonas sp. MWYL1]
gi|150838911|gb|ABR72887.1| transcription termination factor Rho [Marinomonas sp. MWYL1]
Length = 421
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/361 (68%), Positives = 306/361 (84%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEDIYGDGILEILQDGFGFLRSPDCSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N +KPE +N+ LF+NLTPL P + LL+E S E++T RIID
Sbjct: 104 PKDGERYFALLKVSEINFDKPESVRNKILFENLTPLFPDERLLMEAGNGSTEDVTSRIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+V+ PK+GK+ +LQ+IA+AIT N+ E +IV+LIDERPEEVTEM R+V
Sbjct: 164 LVAPMGKGQRALVVSPPKAGKTFMLQNIANAITRNNPECHLIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL+RPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGN E+
Sbjct: 284 VLTGGVDANALERPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNSEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R++AEKR +PAIN+ +SGTRRE+LL +D+LQ++W+LRKLL M + F I
Sbjct: 344 HLDRKIAEKRTFPAINIRRSGTRREDLLTSEDELQRMWILRKLLNP--MEDVAATEFLID 401
Query: 363 R 363
R
Sbjct: 402 R 402
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+ +LQ+IA+AIT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTFMLQNIANAITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL+R
Sbjct: 237 TRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R RKQ+++F+I K+ K GE I+GDG LE+L DGFGFLRS +Y+A DDI
Sbjct: 20 EMGIENMARSRKQDVIFSILKRHAKGGEDIYGDGILEILQDGFGFLRSPDCSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N P+S ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVSEINFDKPESVRNKIL 132
>gi|385329975|ref|YP_005883926.1| transcription termination factor rho [Marinobacter adhaerens HP15]
gi|311693125|gb|ADP95998.1| transcription termination factor rho [Marinobacter adhaerens HP15]
Length = 480
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/360 (67%), Positives = 308/360 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 104 KSGEDIYGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRP 163
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N +KP+ ++N+ LF+NLTPL P + L+LE S E+++ R++D
Sbjct: 164 PKDGERYFALLKVSEINFDKPDNARNKILFENLTPLFPDERLMLEAGNGSTEDLSSRVLD 223
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+APIGKGQRGL+V+ PK+GK++++Q IA +IT N+ E ++V+LIDERPEEVTEMQR+V
Sbjct: 224 LVAPIGKGQRGLIVSPPKAGKTLLMQSIAQSITRNNPECHVMVLLIDERPEEVTEMQRTV 283
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEVIASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 284 RGEVIASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 343
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARN+EEGGSLTI+ATAL+ TGS+MD+VIYEEFKGTGNME+
Sbjct: 344 VLTGGVDAHALEKPKRFFGAARNVEEGGSLTILATALVNTGSKMDEVIYEEFKGTGNMEI 403
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R++AEKR YPAIN+ SGTRRE+LL+ + +Q++W+LRKLL+S+ + + K
Sbjct: 404 HLDRKIAEKRTYPAINIRSSGTRREDLLMSEADIQRVWILRKLLHSMDDDTAAIEFLLDK 463
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q IA +IT N+ E ++V+LIDERPEEVTEMQR+VRGEVIASTFDEP
Sbjct: 237 VSPPKAGKTLLMQSIAQSITRNNPECHVMVLLIDERPEEVTEMQRTVRGEVIASTFDEPP 296
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 297 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 356
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 357 PKRFFGAAR 365
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P +L Q + L+ ++ R RKQ+++F I KK K GE I+GDG LE+L DGFG
Sbjct: 66 LKQKSVPELLDIAQEMGLD--NLARSRKQDVIFTILKKHAKSGEDIYGDGVLEILQDGFG 123
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N
Sbjct: 124 FLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKDGERYFALLKVSEINFDK 183
Query: 492 PKSGKSIIL 500
P + ++ IL
Sbjct: 184 PDNARNKIL 192
>gi|350563885|ref|ZP_08932705.1| transcription termination factor Rho [Thioalkalimicrobium
aerophilum AL3]
gi|349778406|gb|EGZ32762.1| transcription termination factor Rho [Thioalkalimicrobium
aerophilum AL3]
Length = 418
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/345 (71%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFG+G LE+LPDGFGFLRS +Y+A DD+Y+SPSQIRRF L TGD V+G+IR PK
Sbjct: 46 GEDIFGEGVLEILPDGFGFLRSGDGSYLAGPDDLYVSPSQIRRFGLRTGDTVQGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ K+N E P++++ + F+NLTPLH ++ L +E S E+IT RIIDL
Sbjct: 106 EGERYFALLKVDKINFEDPDVARKKIAFENLTPLHAEERLKMELGNGSTEDITPRIIDLA 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIGKGQRGL+VA PKSGK++ILQ +A +I NH E +IV+LIDERPEEVTEMQR+V+G
Sbjct: 166 SPIGKGQRGLIVAPPKSGKTVILQSLAQSIAENHPECYLIVLLIDERPEEVTEMQRTVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVIASTFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV+PASGK+L
Sbjct: 226 EVIASTFDEPATRHVQVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVVPASGKIL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NAL RPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+HL
Sbjct: 286 TGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R +AEKR +PAINL KSGTR+EELL ++LQ IW+LR+ L+++
Sbjct: 346 SRAIAEKRTFPAINLTKSGTRKEELLTTPEELQNIWILRRFLHTM 390
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 141/289 (48%), Gaps = 89/289 (30%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIF-----------------GDGSLEVLPDGF 430
D+ ++++ R RKQ+++FAI K + GE IF GDGS PD
Sbjct: 20 DMGLDNLARQRKQDIIFAILKGHAQKGEDIFGEGVLEILPDGFGFLRSGDGSYLAGPDDL 79
Query: 431 GFLRSQGSNYMASSDDI-------------YLSPSQIRRFNLHTGILWKGEIR----VPK 473
SQ + + D Y + ++ + N + + +I P
Sbjct: 80 YVSPSQIRRFGLRTGDTVQGKIRPPKEGERYFALLKVDKINFEDPDVARKKIAFENLTPL 139
Query: 474 NGERYFALLKIKKVN-------------------------VASPKSGKSIILQHIAHAIT 508
+ E LK++ N VA PKSGK++ILQ +A +I
Sbjct: 140 HAEER---LKMELGNGSTEDITPRIIDLASPIGKGQRGLIVAPPKSGKTVILQSLAQSIA 196
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------- 548
NH E +IV+LIDERPEEVTEMQR+V+GEVIASTFDEPA
Sbjct: 197 ENHPECYLIVLLIDERPEEVTEMQRTVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEH 256
Query: 549 -------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 257 KTDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGAAR 305
>gi|120553418|ref|YP_957769.1| transcription termination factor Rho [Marinobacter aquaeolei VT8]
gi|120323267|gb|ABM17582.1| transcription termination factor Rho [Marinobacter aquaeolei VT8]
Length = 420
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/360 (66%), Positives = 307/360 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIYGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N +KP+ ++N+ LF+NLTPL P + L LE S E+++ R++D
Sbjct: 104 PKDGERYFALLKVNEINFDKPDNARNKILFENLTPLFPDERLTLEAGNGSTEDLSSRVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+APIGKGQRGL+V+ PK+GK++++Q IA +IT N+ E ++V+LIDERPEEVTEMQR+V
Sbjct: 164 LVAPIGKGQRGLIVSPPKAGKTLLMQSIAQSITRNNPECHVMVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEVIASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVIASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARN+EEGGSLTI+ATAL+ TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNVEEGGSLTILATALVNTGSKMDEVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R++AEKR YPAIN+ SGTRRE+LL+ + +Q++W+LRKLL+S+ + + K
Sbjct: 344 HLDRKIAEKRTYPAINIRSSGTRREDLLMSEADIQRVWILRKLLHSMDDDTAAIEFLLDK 403
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q IA +IT N+ E ++V+LIDERPEEVTEMQR+VRGEVIASTFDEP
Sbjct: 177 VSPPKAGKTLLMQSIAQSITRNNPECHVMVLLIDERPEEVTEMQRTVRGEVIASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P +L Q + L +++ R RKQ+++F I KK K GE I+GDG LE+L DGFG
Sbjct: 6 LKQKSVPELLDIAQEMGL--DNLARSRKQDVIFTILKKHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVNEINFDK 123
Query: 492 PKSGKSIIL 500
P + ++ IL
Sbjct: 124 PDNARNKIL 132
>gi|53802749|ref|YP_112596.1| transcription termination factor Rho [Methylococcus capsulatus str.
Bath]
gi|53756510|gb|AAU90801.1| transcription termination factor Rho [Methylococcus capsulatus str.
Bath]
Length = 418
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/348 (69%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+++A DDIY+SPSQIRRF+L TGD + G+IR
Sbjct: 43 AKSGEDIYGDGVLEILQDGFGFLRSPDSSFLAGPDDIYVSPSQIRRFSLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFA+LK++++N E PE +K++ LF NLTPL P + +LE + E++T R+I
Sbjct: 103 PPKDSERYFAMLKVEQINYEPPENAKHKILFSNLTPLFPVQRFVLELGNGTTEDLTARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGL+V+ PK+GK+++LQ++AH+I + E +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLVAPIGKGQRGLIVSPPKAGKTMMLQNVAHSIAEKNPECYLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV++STFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SG
Sbjct: 223 VKGEVVSSTFDEPPARHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL+RPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALERPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HLER++AE+R+YPAIN+N+SGTRREE L+ D+LQK W+LRK+L +
Sbjct: 343 LHLERKIAERRIYPAININRSGTRREEYLVDPDELQKSWILRKILQPM 390
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ++AH+I + E +IV+LIDERPEEVTEMQRSV+GEV++STFDEP
Sbjct: 177 VSPPKAGKTMMLQNVAHSIAEKNPECYLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL+R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 84/112 (75%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ V R RKQ+L+F+I KK K GE I+GDG LE+L DGFGFLRS S+++A DDIY
Sbjct: 21 LDIEGVARTRKQDLIFSILKKLAKSGEDIYGDGVLEILQDGFGFLRSPDSSFLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRF+L TG G+IR PK+ ERYFA+LK++++N P++ K IL
Sbjct: 81 VSPSQIRRFSLRTGDTISGKIRPPKDSERYFAMLKVEQINYEPPENAKHKIL 132
>gi|88705507|ref|ZP_01103217.1| transcription termination factor Rho [Congregibacter litoralis
KT71]
gi|88700020|gb|EAQ97129.1| transcription termination factor Rho [Congregibacter litoralis
KT71]
Length = 422
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/350 (72%), Positives = 308/350 (88%), Gaps = 3/350 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTITGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLKI +VN +PE SK++ LF+NLTPL P++ L LE+ S E++TGRIID
Sbjct: 104 PKDSERYFALLKIGEVNFSRPENSKSKILFENLTPLFPEERLTLEKGNGSTEDLTGRIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+APIGKGQRGLLVA PK+GK+I++Q+IA AI +N+ E MIV+LIDERPEEVTEMQRSV
Sbjct: 164 LVAPIGKGQRGLLVAPPKAGKTIMMQNIAQAILSNNPETYMIVLLIDERPEEVTEMQRSV 223
Query: 183 --RG-EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RG EV+ASTFDEP RHVQVA+MV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+
Sbjct: 224 GIRGAEVVASTFDEPPSRHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPS 283
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATAL++TGS+MD+VIYEEFKGTGN
Sbjct: 284 SGKVLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALVDTGSKMDEVIYEEFKGTGN 343
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
ME+HL+R++AEKR+YPAIN+ +SGTRREE L +++LQ++W+LRKLL+ +
Sbjct: 344 MELHLDRKIAEKRIYPAINIRRSGTRREEKLTGEEELQRMWILRKLLHGM 393
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 166/286 (58%), Gaps = 86/286 (30%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
++++ R RKQ+++F+I K+ K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LDNLARSRKQDIIFSILKRHAKGGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKN----------GERYFAL------------------- 481
PSQIRRFNL TG G+IR PK+ GE F+
Sbjct: 83 PSQIRRFNLRTGDTITGKIRPPKDSERYFALLKIGEVNFSRPENSKSKILFENLTPLFPE 142
Query: 482 --LKIKKVN-------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
L ++K N VA PK+GK+I++Q+IA AI +N+ E
Sbjct: 143 ERLTLEKGNGSTEDLTGRIIDLVAPIGKGQRGLLVAPPKAGKTIMMQNIAQAILSNNPET 202
Query: 515 IMIVMLIDERPEEVTEMQRSV--RG-EVIASTFDEPA----------------------- 548
MIV+LIDERPEEVTEMQRSV RG EV+ASTFDEP
Sbjct: 203 YMIVLLIDERPEEVTEMQRSVGIRGAEVVASTFDEPPSRHVQVADMVIEKAKRLVEHKRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD++AL+RPKRFFGAAR
Sbjct: 263 VVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRFFGAAR 308
>gi|336312833|ref|ZP_08567779.1| transcription termination factor Rho [Shewanella sp. HN-41]
gi|335863794|gb|EGM68923.1| transcription termination factor Rho [Shewanella sp. HN-41]
Length = 421
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/351 (70%), Positives = 300/351 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH ++ + +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R+ AEKRV+PAI+ N+SGTRREE L ++LQK+W+LRK+L + S
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTQEELQKMWILRKILNPMDEVS 394
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 154/302 (50%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + +++ + + LE ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTPISDLVSLAENMKLE--NMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDGFGFLRSQGSNY-MASSDDIY---LSPSQIRRF------------- 457
DGS PD SQ + M + D I+ P + R+
Sbjct: 64 FLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVNFDK 123
Query: 458 --NLHTGILWKG--------EIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
N IL++ +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +IT N+ E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|392549379|ref|ZP_10296516.1| transcription termination factor Rho [Pseudoalteromonas rubra ATCC
29570]
Length = 419
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/349 (69%), Positives = 305/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+G G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF+L TGD + G IR
Sbjct: 43 AKSGENIYGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTP+H + +++ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPIHANERMVMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQR L+VA PK+GK+++LQ+IA +I+ N+ +A ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRALIVAPPKAGKTMLLQNIAQSISYNNPDATLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SG
Sbjct: 223 VQGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKPDELQKMWILRKIVHEMS 391
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I+ N+ +A ++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSISYNNPDATLMVLLIDERPEEVTEMQRLVQGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++FAI K K GE I+G G LE+L DGFG
Sbjct: 6 LKDKSINELVKLAESMGLE--NVARLRKQDIIFAILKAHAKSGENIYGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF+L TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|392310785|ref|ZP_10273319.1| transcription termination factor Rho [Pseudoalteromonas citrea
NCIMB 1889]
Length = 419
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/349 (69%), Positives = 305/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+G G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKSGENIYGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDTISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN ++PE S+ + LF+NLTP+H + ++ER SKE+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDRPENSRTKILFENLTPIHANERFVMERGNGSKEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQR L+VA PK+GK+++LQ+IA +IT N+ +A ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRALIVAPPKAGKTMLLQNIAQSITYNNPDATLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPANRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTI+ATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIVATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAEKRVFPAIDFNRSGTRREELLTKADELQKMWILRKIVHEMS 391
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT N+ +A ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSITYNNPDATLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 NRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++FAI K K GE I+G G LE+L DGFG
Sbjct: 6 LKDKSINELVKLAESMGLE--NVARLRKQDIIFAILKAHAKSGENIYGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDTISGLIRPPKDGERYFALLKVNEVNFDR 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|417361717|ref|ZP_12135540.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353583214|gb|EHC43637.1| Transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 432
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/360 (68%), Positives = 303/360 (84%), Gaps = 13/360 (3%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKV-------------NGEKPELSKNRTLFDNLTPLHPKKLLLLERN 109
PK GERYFALLK+ +V N +KPE ++N+ LF+NLTPLH L +ER
Sbjct: 104 PKEGERYFALLKVNEVEVNYDKPENVNEVNYDKPENARNKILFENLTPLHANSRLRMERG 163
Query: 110 IESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169
S E++T R++DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LID
Sbjct: 164 NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 223
Query: 170 ERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRL 229
ERPEEVTEMQR V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRL
Sbjct: 224 ERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 283
Query: 230 ARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDV 289
ARAYNTV+PASGKVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+V
Sbjct: 284 ARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEV 343
Query: 290 IYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
IYEEFKGTGNME+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 403
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 190 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 249
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 250 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 309
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 310 PKRFFGAAR 318
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 87/118 (73%), Gaps = 2/118 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +V V
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVEV 121
>gi|326796692|ref|YP_004314512.1| transcription termination factor Rho [Marinomonas mediterranea
MMB-1]
gi|326547456|gb|ADZ92676.1| transcription termination factor Rho [Marinomonas mediterranea
MMB-1]
Length = 421
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/361 (68%), Positives = 305/361 (84%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIYGDGILEILQDGFGFLRSPDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N +KP+ +N+ LF+NLTPL LL+E S E++T RIID
Sbjct: 104 PKDGERYFALLKVNEINFDKPDSVRNKILFENLTPLFADDRLLMEAGNGSTEDVTSRIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+V+ PK+GK+ +LQ+IA+AIT N+ E MIV+LIDERPEEVTEM R+V
Sbjct: 164 LVAPMGKGQRALVVSPPKAGKTFMLQNIANAITRNNPECHMIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL+RPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGN E+
Sbjct: 284 VLTGGVDANALERPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNSEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R++AEKR +PAIN+ +SGTRRE+LL +D+LQ++W+LRKLL M + F I
Sbjct: 344 HLDRKIAEKRTFPAINIRRSGTRREDLLTTEDELQRMWILRKLLNP--MEDIAATEFLID 401
Query: 363 R 363
R
Sbjct: 402 R 402
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+ +LQ+IA+AIT N+ E MIV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTFMLQNIANAITRNNPECHMIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL+R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++F+I K+ K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGLDNLARSRKQDVIFSILKRHAKSGEDIYGDGILEILQDGFGFLRSPDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N P S ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEINFDKPDSVRNKIL 132
>gi|254523471|ref|ZP_05135526.1| transcription termination factor Rho [Stenotrophomonas sp. SKA14]
gi|219721062|gb|EED39587.1| transcription termination factor Rho [Stenotrophomonas sp. SKA14]
Length = 583
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 208 TRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHISGRIR 267
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P++ LER S E+ITGRI+
Sbjct: 268 FPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRFTLERGNGSSEDITGRIL 327
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 328 DLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 387
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 388 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 447
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGN E
Sbjct: 448 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSE 507
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRV+PAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 508 VHLSRRIAEKRVFPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 555
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 191 VARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 250
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 251 IRRFNLRTGDHISGRIRFPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRF 310
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH + +I
Sbjct: 311 TLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLI 370
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 371 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 430
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 431 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 470
>gi|456735088|gb|EMF59858.1| Transcription termination factor Rho [Stenotrophomonas maltophilia
EPM1]
Length = 581
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 206 TRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHISGRIR 265
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P++ LER S E+ITGRI+
Sbjct: 266 FPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRFTLERGNGSSEDITGRIL 325
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 326 DLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 385
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 386 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 445
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGN E
Sbjct: 446 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSE 505
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRV+PAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 506 VHLSRRIAEKRVFPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 553
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 189 VARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 248
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 249 IRRFNLRTGDHISGRIRFPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRF 308
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH + +I
Sbjct: 309 TLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLI 368
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 369 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 428
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 429 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 468
>gi|424670404|ref|ZP_18107429.1| transcription termination factor Rho [Stenotrophomonas maltophilia
Ab55555]
gi|401070862|gb|EJP79376.1| transcription termination factor Rho [Stenotrophomonas maltophilia
Ab55555]
Length = 583
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 208 TRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHISGRIR 267
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P++ LER S E+ITGRI+
Sbjct: 268 FPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRFTLERGNGSSEDITGRIL 327
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 328 DLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 387
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 388 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 447
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGN E
Sbjct: 448 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSE 507
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRV+PAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 508 VHLSRRIAEKRVFPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 555
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 191 VARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 250
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 251 IRRFNLRTGDHISGRIRFPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRF 310
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH + +I
Sbjct: 311 TLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLI 370
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 371 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 430
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 431 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 470
>gi|454812|gb|AAA59207.1| The first ATG in the open reading frame was chosen as the start
codon [Allochromatium vinosum]
Length = 433
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/350 (70%), Positives = 303/350 (86%), Gaps = 1/350 (0%)
Query: 1 KTKIGERIFGDGSLE-VLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGE 59
+ K GE I+GDG LE +L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD + G+
Sbjct: 42 QAKKGEDIYGDGVLEKILSDGFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGK 101
Query: 60 IRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGR 119
IR PK+GERYFALLK+ +N ++PE +K++ LF+N TPL +K L LE S E+IT R
Sbjct: 102 IRPPKDGERYFALLKVNDINFDRPENAKSKILFENFTPLFAQKRLTLEIGNGSTEDITAR 161
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
IDL+APIGKGQRGL+V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM
Sbjct: 162 TIDLVAPIGKGQRGLIVSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMA 221
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RSVRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P
Sbjct: 222 RSVRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPL 281
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGN
Sbjct: 282 SGKVLTGGVDANALQRPKRFFGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGN 341
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
ME+H++RR+AEKR++PAIN+N+SGTRREELL+ +LQK+W+LRK+L+ +
Sbjct: 342 MEIHMDRRIAEKRIFPAININRSGTRREELLMGQAELQKMWILRKILHPM 391
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 171/303 (56%), Gaps = 86/303 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLE-VLPDGF 430
LK +P ++A Q++D+E V R RKQ+L+FAI K + K GE I+GDG LE +L DGF
Sbjct: 6 LKKMPVPNLVALAQSMDIE--GVGRSRKQDLIFAILKAQAKKGEDIYGDGVLEKILSDGF 63
Query: 431 GFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNG--------------- 475
GFLRS ++Y+A DDIY+SPSQIRRF L TG G+IR PK+G
Sbjct: 64 GFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVNDINFD 123
Query: 476 -----------ERYFALLKIKKVN------------------------------VASPKS 494
E + L K++ V+ PK+
Sbjct: 124 RPENAKSKILFENFTPLFAQKRLTLEIGNGSTEDITARTIDLVAPIGKGQRGLIVSPPKA 183
Query: 495 GKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------ 548
GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 184 GKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHVQV 243
Query: 549 ---------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFG 587
L + +LARAYNTV+P SGKVLTGGVD+NALQRPKRFFG
Sbjct: 244 AEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPLSGKVLTGGVDANALQRPKRFFG 303
Query: 588 AAR 590
AAR
Sbjct: 304 AAR 306
>gi|344209108|ref|YP_004794249.1| transcription termination factor Rho [Stenotrophomonas maltophilia
JV3]
gi|343780470|gb|AEM53023.1| transcription termination factor Rho [Stenotrophomonas maltophilia
JV3]
Length = 583
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 208 TRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHISGRIR 267
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P++ LER S E+ITGRI+
Sbjct: 268 FPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRFTLERGNGSSEDITGRIL 327
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 328 DLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 387
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 388 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 447
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGN E
Sbjct: 448 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSE 507
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRV+PAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 508 VHLSRRIAEKRVFPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 555
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 191 VARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 250
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 251 IRRFNLRTGDHISGRIRFPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRF 310
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH + +I
Sbjct: 311 TLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLI 370
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 371 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 430
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 431 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 470
>gi|359300526|ref|ZP_09186365.1| transcription termination factor Rho [Haemophilus [parainfluenzae]
CCUG 13788]
gi|402304746|ref|ZP_10823810.1| transcription termination factor Rho [Haemophilus sputorum HK 2154]
gi|400377153|gb|EJP30033.1| transcription termination factor Rho [Haemophilus sputorum HK 2154]
Length = 420
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 300/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLAAPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 224 VRGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVVILLDSITRLARAYNTVTPVSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AE+RV+PAI+ N+SGTR+++LL+ ++ QK W+LRK++ +
Sbjct: 344 LHLSRKIAERRVFPAIDFNRSGTRKDDLLMSPEEHQKTWMLRKVINPM 391
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 145/294 (49%), Gaps = 85/294 (28%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSL 423
L E + + ++ RLRKQ+++FAI K+ K GE I FG D S
Sbjct: 14 LVEMGENQMGLENLARLRKQDIVFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSADSSY 73
Query: 424 EVLPDGFGFLRSQ---------------------GSNYMA-------SSDDIYLSPSQIR 455
PD SQ G Y A + D +S S+I
Sbjct: 74 LAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKIL 133
Query: 456 RFNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHI 503
NL T + +R+ + NG +I + + VA PK+GK+++LQ+I
Sbjct: 134 FENL-TPLHANSRLRMERGNGSTEDLTARILDLAAPIGKGQRGLIVAPPKAGKTVLLQNI 192
Query: 504 AHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------- 548
A +IT N+ E +IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 193 AQSITHNYPECELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAK 252
Query: 549 ------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 253 RAVEHKKDVVILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|194367448|ref|YP_002030058.1| transcription termination factor Rho [Stenotrophomonas maltophilia
R551-3]
gi|194350252|gb|ACF53375.1| transcription termination factor Rho [Stenotrophomonas maltophilia
R551-3]
Length = 583
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 208 TRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 267
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P++ LER S E+ITGRI+
Sbjct: 268 FPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRRRFTLERGNGSSEDITGRIL 327
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 328 DLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 387
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 388 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 447
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGN E
Sbjct: 448 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSE 507
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRV+PAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 508 VHLSRRIAEKRVFPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 555
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 191 VARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 250
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 251 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRRRF 310
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH + +I
Sbjct: 311 TLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLI 370
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 371 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 430
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 431 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 470
>gi|157960226|ref|YP_001500260.1| transcription termination factor Rho [Shewanella pealeana ATCC
700345]
gi|157845226|gb|ABV85725.1| transcription termination factor Rho [Shewanella pealeana ATCC
700345]
Length = 421
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/344 (71%), Positives = 297/344 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH ++ + +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVTEVNFDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITSRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ +A +IT N+ E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQTMAQSITYNNPEVVLMVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTPDELQKMWILRKIL 387
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 153/302 (50%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + ++ Q D+++ ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTSISDLVQLAQ--DMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDGFGFLRSQGSNY-MASSDDIY---LSPSQIRRF------------- 457
DGS PD SQ + M + D I+ P + R+
Sbjct: 64 FLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVTEVNFDK 123
Query: 458 --NLHTGILWKG--------EIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
N IL++ +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHAEERMRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ +A +IT N+ E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQTMAQSITYNNPEVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|293610419|ref|ZP_06692720.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375137130|ref|YP_004997780.1| transcription termination factor Rho [Acinetobacter calcoaceticus
PHEA-2]
gi|427424280|ref|ZP_18914414.1| transcription termination factor Rho [Acinetobacter baumannii
WC-136]
gi|292827651|gb|EFF86015.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124575|gb|ADY84098.1| transcription termination factor Rho [Acinetobacter calcoaceticus
PHEA-2]
gi|425699020|gb|EKU68642.1| transcription termination factor Rho [Acinetobacter baumannii
WC-136]
Length = 422
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/345 (70%), Positives = 299/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVIASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVIASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ +DKL+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMDEDKLRKVWILRKLLHPM 390
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEVIASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVIASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|334144661|ref|YP_004537817.1| transcription termination factor Rho [Thioalkalimicrobium cyclicum
ALM1]
gi|333965572|gb|AEG32338.1| transcription termination factor Rho [Thioalkalimicrobium cyclicum
ALM1]
Length = 418
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/345 (70%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFG+G LE+LPDGFGFLRS +Y+A DD+Y+SPSQIRRF L TGD V+G+IR PK
Sbjct: 46 GEDIFGEGVLEILPDGFGFLRSGDGSYLAGPDDLYVSPSQIRRFGLRTGDTVQGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N E P++++ + F+NLTPLH ++ L +E S E+IT RIIDL
Sbjct: 106 EGERYFALLKVDRINFEDPDVARKKIAFENLTPLHAEQRLKMEIGNGSTEDITPRIIDLA 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIGKGQRGL+VA PKSGK++ILQ +A +I NH E +IV+LIDERPEEVTEMQR+V+G
Sbjct: 166 SPIGKGQRGLIVAPPKSGKTVILQSLAQSIAENHPECYLIVLLIDERPEEVTEMQRTVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVIASTFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV+PASGK+L
Sbjct: 226 EVIASTFDEPATRHVQVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVVPASGKIL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NAL RPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+HL
Sbjct: 286 TGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R +AEKR +PAINL KSGTR+EELL ++LQ IW+LR+ L+++
Sbjct: 346 SRAIAEKRTFPAINLTKSGTRKEELLTTPEELQNIWILRRFLHTM 390
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 142/289 (49%), Gaps = 89/289 (30%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSLEVLPDGF 430
D+ ++++ R RKQ+++FAI K + GE IFG DGS PD
Sbjct: 20 DMGLDNLARQRKQDIIFAILKGHAQKGEDIFGEGVLEILPDGFGFLRSGDGSYLAGPDDL 79
Query: 431 GFLRSQGSNYMASSDDI-------------YLSPSQIRRFNLHTGILWKGEIR----VPK 473
SQ + + D Y + ++ R N + + +I P
Sbjct: 80 YVSPSQIRRFGLRTGDTVQGKIRPPKEGERYFALLKVDRINFEDPDVARKKIAFENLTPL 139
Query: 474 NGERYFALLKIKKVN-------------------------VASPKSGKSIILQHIAHAIT 508
+ E+ LK++ N VA PKSGK++ILQ +A +I
Sbjct: 140 HAEQR---LKMEIGNGSTEDITPRIIDLASPIGKGQRGLIVAPPKSGKTVILQSLAQSIA 196
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------- 548
NH E +IV+LIDERPEEVTEMQR+V+GEVIASTFDEPA
Sbjct: 197 ENHPECYLIVLLIDERPEEVTEMQRTVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEH 256
Query: 549 -------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 257 KTDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGAAR 305
>gi|344941619|ref|ZP_08780907.1| transcription termination factor Rho [Methylobacter tundripaludum
SV96]
gi|344262811|gb|EGW23082.1| transcription termination factor Rho [Methylobacter tundripaludum
SV96]
Length = 418
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/353 (68%), Positives = 301/353 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G+ I GDG LE+L DGFGFLR+ G +Y+A DDIY+SPSQIRRF+L TGD + G+I
Sbjct: 42 QAKAGDDISGDGVLEILQDGFGFLRTPGCSYLAGPDDIYVSPSQIRRFSLKTGDTISGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFA+LK+ ++N E PE +KN+ F NLTPL K+ +LE+ + E++TGR+
Sbjct: 102 RPPKDNERYFAMLKVDQINFEPPENTKNKITFSNLTPLFAKQRFVLEQGNGTSEDLTGRM 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGL+V+ PK+GK++ILQ +A AI + E +IV+LIDERPEEVTEM+R
Sbjct: 162 IDLIAPIGKGQRGLIVSPPKAGKTMILQSLAQAIAEQNPECYLIVLLIDERPEEVTEMER 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
VRGEVI+STFDEPA RHVQVAEMV+EKA+RLVE K DV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 CVRGEVISSTFDEPATRHVQVAEMVIEKARRLVEHKHDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+LTGGVD+NAL++PKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VIYEEFKGTGNM
Sbjct: 282 GKILTGGVDANALEKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
E+HL+R++AEKR+YPAIN+N+SGTRREE L+ D LQK W+LRK+L + T+
Sbjct: 342 ELHLDRKIAEKRIYPAININRSGTRREEYLVDPDTLQKTWILRKILQPMDETA 394
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++ILQ +A AI + E +IV+LIDERPEEVTEM+R VRGEVI+STFDEPA
Sbjct: 177 VSPPKAGKTMILQSLAQAIAEQNPECYLIVLLIDERPEEVTEMERCVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGK+LTGGVD+NAL++
Sbjct: 237 TRHVQVAEMVIEKARRLVEHKHDVVILLDSITRLARAYNTVVPSSGKILTGGVDANALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 83/111 (74%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + +V R RKQ+L+FAI KK+ K G+ I GDG LE+L DGFGFLR+ G +Y+A DDIY
Sbjct: 21 LGLENVARSRKQDLIFAILKKQAKAGDDISGDGVLEILQDGFGFLRTPGCSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
+SPSQIRRF+L TG G+IR PK+ ERYFA+LK+ ++N P++ K+ I
Sbjct: 81 VSPSQIRRFSLKTGDTISGKIRPPKDNERYFAMLKVDQINFEPPENTKNKI 131
>gi|254515494|ref|ZP_05127554.1| transcription termination factor Rho [gamma proteobacterium NOR5-3]
gi|219675216|gb|EED31582.1| transcription termination factor Rho [gamma proteobacterium NOR5-3]
Length = 428
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/353 (71%), Positives = 306/353 (86%), Gaps = 3/353 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 50 KSGEDIHGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTITGKIRP 109
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLKI +VN +PE SK++ LF+NLTPL P + L LE S E++TGRIID
Sbjct: 110 PKDSERYFALLKIGEVNFSRPENSKSKILFENLTPLFPDERLTLEVGNGSTEDLTGRIID 169
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+APIGKGQRGLLVA PK+GK+I++Q+IA AI TN+ E MIV+LIDERPEEVTEMQRSV
Sbjct: 170 LVAPIGKGQRGLLVAPPKAGKTIMMQNIAQAILTNNPETYMIVLLIDERPEEVTEMQRSV 229
Query: 183 --RG-EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RG EV+ASTFDEP RHVQVA+MV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+
Sbjct: 230 GVRGAEVVASTFDEPPSRHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPS 289
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATAL++TGS+MD+VIYEEFKGTGN
Sbjct: 290 SGKVLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALVDTGSKMDEVIYEEFKGTGN 349
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
ME+HL+R++AEKR+YPAIN+ +SGTRREE L +++LQ++W+LRKLL+ + T
Sbjct: 350 MELHLDRKIAEKRIYPAINIRRSGTRREEKLTGEEELQRMWILRKLLHGMEDT 402
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/132 (59%), Positives = 92/132 (69%), Gaps = 30/132 (22%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS--VRG-EVIASTFD 545
VA PK+GK+I++Q+IA AI TN+ E MIV+LIDERPEEVTEMQRS VRG EV+ASTFD
Sbjct: 183 VAPPKAGKTIMMQNIAQAILTNNPETYMIVLLIDERPEEVTEMQRSVGVRGAEVVASTFD 242
Query: 546 EPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNA 578
EP L + +LARAYNTVIP+SGKVLTGGVD++A
Sbjct: 243 EPPSRHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHA 302
Query: 579 LQRPKRFFGAAR 590
L+RPKRFFGAAR
Sbjct: 303 LERPKRFFGAAR 314
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
++++ R RKQ+++F+I K+ K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 29 LDNLARSRKQDIIFSILKRHAKSGEDIHGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 88
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK+ ERYFALLKI +VN + P++ KS IL
Sbjct: 89 PSQIRRFNLRTGDTITGKIRPPKDSERYFALLKIGEVNFSRPENSKSKIL 138
>gi|223041774|ref|ZP_03611966.1| transcription termination factor Rho [Actinobacillus minor 202]
gi|223017425|gb|EEF15844.1| transcription termination factor Rho [Actinobacillus minor 202]
Length = 420
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/347 (70%), Positives = 298/347 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD VEG+IR
Sbjct: 45 KSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKVEGKIRP 104
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+D
Sbjct: 105 PKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARILD 164
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQR L+VA PK+GK+++LQ+IA +IT NH E +IV+LIDERPEEVTEMQR+V
Sbjct: 165 LAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVTEMQRTV 224
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SGK
Sbjct: 225 RGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPVSGK 284
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+
Sbjct: 285 ILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEL 344
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AE+R++PAI N+SGTR+++LL+ ++ QK W+LRK+L +
Sbjct: 345 HLSRKIAERRIFPAIEFNRSGTRKDDLLMTPEEHQKTWMLRKVLNPM 391
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 142/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE IFG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKVEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT NH E
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPE 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 203 CELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|212554811|gb|ACJ27265.1| Transcription termination factor Rho [Shewanella piezotolerans WP3]
Length = 421
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/344 (71%), Positives = 299/344 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ +VN ++PE S+N+ LF+NLTPLH ++ L +ER S E+IT RI+D
Sbjct: 104 PKDGERYFALLKVTEVNFDRPENSRNKILFENLTPLHAEERLRMERGNGSTEDITSRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +P+GKGQRGL+VA PK+GK+++LQ++A +IT N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPVGKGQRGLIVAPPKAGKTLLLQNMAQSITYNNPDVVLMVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTPDELQKMWILRKIL 387
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 153/302 (50%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + ++ Q D+++ ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTSISDLVQLAQ--DMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDGFGFLRSQGSNY-MASSDDIY---LSPSQIRRF------------- 457
DGS PD SQ + M + D I+ P R+
Sbjct: 64 FLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKDGERYFALLKVTEVNFDR 123
Query: 458 --NLHTGILWKG--------EIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
N IL++ +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHAEERLRMERGNGSTEDITSRILDLCSPVGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ++A +IT N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQNMAQSITYNNPDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|190576091|ref|YP_001973936.1| transcription termination factor Rho [Stenotrophomonas maltophilia
K279a]
gi|408821801|ref|ZP_11206691.1| transcription termination factor Rho [Pseudomonas geniculata N1]
gi|190014013|emb|CAQ47653.1| putative transcription termination factor [Stenotrophomonas
maltophilia K279a]
Length = 426
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 51 TRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHISGRIR 110
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P++ LER S E+ITGRI+
Sbjct: 111 FPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRFTLERGNGSSEDITGRIL 170
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 171 DLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 230
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 231 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 290
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGN E
Sbjct: 291 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSE 350
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRV+PAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 351 VHLSRRIAEKRVFPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 398
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 34 VARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 93
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 94 IRRFNLRTGDHISGRIRFPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRF 153
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH + +I
Sbjct: 154 TLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLI 213
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 214 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 273
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 274 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 313
>gi|399912515|ref|ZP_10780829.1| transcription termination factor Rho [Halomonas sp. KM-1]
Length = 419
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/369 (67%), Positives = 312/369 (84%), Gaps = 2/369 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL GD + G+IR
Sbjct: 44 KSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ ++N +KPE +K++ LF+NLTPL P++ L +E S E++T RIID
Sbjct: 104 PKEGERYFALLKVSQINFDKPENAKHKILFENLTPLFPQERLRMEIGNGSTEDLTARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+V+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+V
Sbjct: 164 LTAPIGKGQRGLIVSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEA 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R+LAE+RVYPA+N+ +SGTRRE+L+ +D++Q++W+LRKLL + T+ T F I
Sbjct: 344 HLDRKLAERRVYPALNIRRSGTRREDLIASEDEMQRMWILRKLLNPMDDTAATE--FLID 401
Query: 363 RTIPVEKNL 371
R + NL
Sbjct: 402 RLKDTKTNL 410
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P +L + ++ ++++ R RKQ+++FAI KK K GE I+GDG LE+L DGFG
Sbjct: 6 LKQKTVPELLELAR--EMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL G G+IR PK GERYFALLK+ ++N
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQINFDK 123
Query: 492 PKSGKSIIL 500
P++ K IL
Sbjct: 124 PENAKHKIL 132
>gi|359787467|ref|ZP_09290514.1| transcription termination factor Rho [Halomonas sp. GFAJ-1]
gi|359295284|gb|EHK59559.1| transcription termination factor Rho [Halomonas sp. GFAJ-1]
Length = 419
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/369 (67%), Positives = 310/369 (84%), Gaps = 2/369 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL GD + G+IR
Sbjct: 44 KSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ ++N ++PE +K++ LF+NLTPL P + +E S E++T RIID
Sbjct: 104 PKEGERYFALLKVSQINFDRPENAKHKILFENLTPLFPDDRMRMEIGNGSTEDLTARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGLLV+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+V
Sbjct: 164 LTAPIGKGQRGLLVSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEA 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R+LAEKRV+PAIN+ +SGTRRE+LL +D++Q++W+LRKLL + T+ T F I
Sbjct: 344 HLDRKLAEKRVFPAINIRRSGTRREDLLASEDEMQRMWILRKLLNPMEDTAATE--FLID 401
Query: 363 RTIPVEKNL 371
R + NL
Sbjct: 402 RLKDTKTNL 410
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FAI KK K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL G G+IR PK GERYFALLK+ ++N P++ K IL
Sbjct: 80 YVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQINFDRPENAKHKIL 132
>gi|299771521|ref|YP_003733547.1| transcription termination factor Rho [Acinetobacter oleivorans DR1]
gi|424743262|ref|ZP_18171575.1| transcription termination factor Rho [Acinetobacter baumannii
WC-141]
gi|298701609|gb|ADI92174.1| transcription termination factor Rho [Acinetobacter oleivorans DR1]
gi|422943523|gb|EKU38539.1| transcription termination factor Rho [Acinetobacter baumannii
WC-141]
Length = 422
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/345 (70%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVIASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVIASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ DD L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMDDDNLRKVWILRKLLHPM 390
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEVIASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVIASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|88797354|ref|ZP_01112944.1| transcription termination factor Rho [Reinekea blandensis MED297]
gi|88780223|gb|EAR11408.1| transcription termination factor Rho [Reinekea sp. MED297]
Length = 418
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/348 (69%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGDGVLEILQDGFGFLRSASASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +N E +KN+ LF+NLTPL P L+LE S E++ GRI+
Sbjct: 103 PPKDGERYFALLKVDTINFAPLEKAKNKILFENLTPLFPDDRLVLEAGNGSSEDMAGRIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+V+ PK+GK+++LQ++A AIT + +A ++V+LIDERPEEVTEMQRS
Sbjct: 163 DLASPIGKGQRGLIVSPPKAGKTLMLQNVAQAITRDAPDAYLMVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEP RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNT++P+SG
Sbjct: 223 VRGEVIASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTIVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL+RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALERPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL+R++AEKR++PAIN+ +SGTRRE++L + +LQ++W+LRKLL +
Sbjct: 343 VHLDRKIAEKRIFPAINIRRSGTRREDMLTSESELQRMWILRKLLAEM 390
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 178/302 (58%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P +L +++ LE ++ R RKQ+L+F I K+ K GE I+GDG LE+L DGFG
Sbjct: 6 LKTKAVPELLDIAKSMGLE--NINRTRKQDLIFTILKRHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--- 488
FLRS ++Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ +N
Sbjct: 64 FLRSASASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVDTINFAP 123
Query: 489 ----------------------------------------VASP-------------KSG 495
+ASP K+G
Sbjct: 124 LEKAKNKILFENLTPLFPDDRLVLEAGNGSSEDMAGRILDLASPIGKGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ++A AIT + +A ++V+LIDERPEEVTEMQRSVRGEVIASTFDEP
Sbjct: 184 KTLMLQNVAQAITRDAPDAYLMVLLIDERPEEVTEMQRSVRGEVIASTFDEPPARHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNT++P+SGKVLTGGVD+NAL+RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVIILLDSITRLARAYNTIVPSSGKVLTGGVDANALERPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|338999295|ref|ZP_08637945.1| transcription termination factor Rho [Halomonas sp. TD01]
gi|338763859|gb|EGP18841.1| transcription termination factor Rho [Halomonas sp. TD01]
Length = 419
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/369 (67%), Positives = 310/369 (84%), Gaps = 2/369 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL GD + G+IR
Sbjct: 44 KSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ ++N ++PE +K++ LF+NLTPL P + +E S E++T RIID
Sbjct: 104 PKEGERYFALLKVSQINFDRPENAKHKILFENLTPLFPDDRMRMEIGNGSTEDLTARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGLLV+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+V
Sbjct: 164 LTAPIGKGQRGLLVSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEA 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R+LAEKRV+PAIN+ +SGTRRE+LL +D++Q++W+LRKLL + T+ T F I
Sbjct: 344 HLDRKLAEKRVFPAINIRRSGTRREDLLASEDEMQRMWILRKLLNPMEDTAATE--FLID 401
Query: 363 RTIPVEKNL 371
R + NL
Sbjct: 402 RLKDTKTNL 410
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FAI KK K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL G G+IR PK GERYFALLK+ ++N P++ K IL
Sbjct: 80 YVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQINFDRPENAKHKIL 132
>gi|386720204|ref|YP_006186530.1| transcription termination factor Rho [Stenotrophomonas maltophilia
D457]
gi|384079766|emb|CCH14369.1| Transcription termination factor Rho [Stenotrophomonas maltophilia
D457]
Length = 444
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 299/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 69 TRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHISGRIR 128
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLT L P++ LER S E+ITGRI+
Sbjct: 129 FPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRFTLERGNGSSEDITGRIL 188
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH + +IV+LIDERPEEVTEMQR+
Sbjct: 189 DLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLIVLLIDERPEEVTEMQRT 248
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRLVE KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 249 VRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSG 308
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGN E
Sbjct: 309 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSE 368
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL RR+AEKRV+PAI++N+SGTRRE+LLI+ + LQKIW+LRKLL+ +
Sbjct: 369 VHLSRRIAEKRVFPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPM 416
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 158/280 (56%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ G+ + DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 52 VARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 111
Query: 454 IRRFNLHTGILWKGEIRVPK--------------NGE--------------------RYF 479
IRRFNL TG G IR PK NGE R F
Sbjct: 112 IRRFNLRTGDHISGRIRFPKDGERYFALNIVDTINGEPIEASKNKVLFENLTALFPRRRF 171
Query: 480 ALLK----------------------IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMI 517
L + + + V+ PK+GK++++Q +A AITTNH + +I
Sbjct: 172 TLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITTNHPDVHLI 231
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVTEMQR+VRGEVI+STFDEPA L
Sbjct: 232 VLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLD 291
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN V+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 292 SITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAAR 331
>gi|169634328|ref|YP_001708064.1| transcription termination factor Rho [Acinetobacter baumannii SDF]
gi|169797144|ref|YP_001714937.1| transcription termination factor Rho [Acinetobacter baumannii AYE]
gi|184156929|ref|YP_001845268.1| transcription termination factor Rho [Acinetobacter baumannii
ACICU]
gi|213156065|ref|YP_002318110.1| transcription termination factor Rho [Acinetobacter baumannii
AB0057]
gi|215484607|ref|YP_002326842.1| transcription termination factor Rho [Acinetobacter baumannii
AB307-0294]
gi|239500686|ref|ZP_04659996.1| transcription termination factor Rho [Acinetobacter baumannii
AB900]
gi|260551928|ref|ZP_05825790.1| transcription termination factor Rho [Acinetobacter sp. RUH2624]
gi|260556046|ref|ZP_05828265.1| transcription termination factor Rho [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|301344688|ref|ZP_07225429.1| transcription termination factor Rho [Acinetobacter baumannii
AB056]
gi|301510190|ref|ZP_07235427.1| transcription termination factor Rho [Acinetobacter baumannii
AB058]
gi|301595526|ref|ZP_07240534.1| transcription termination factor Rho [Acinetobacter baumannii
AB059]
gi|332856883|ref|ZP_08436292.1| transcription termination factor Rho [Acinetobacter baumannii
6013150]
gi|332867215|ref|ZP_08437480.1| transcription termination factor Rho [Acinetobacter baumannii
6013113]
gi|332873994|ref|ZP_08441929.1| transcription termination factor Rho [Acinetobacter baumannii
6014059]
gi|384130605|ref|YP_005513217.1| rho [Acinetobacter baumannii 1656-2]
gi|384141889|ref|YP_005524599.1| transcription termination factor Rho [Acinetobacter baumannii
MDR-ZJ06]
gi|385236197|ref|YP_005797536.1| transcription termination factor Rho [Acinetobacter baumannii
TCDC-AB0715]
gi|387125157|ref|YP_006291039.1| transcription termination factor Rho [Acinetobacter baumannii
MDR-TJ]
gi|403673141|ref|ZP_10935444.1| transcription termination factor Rho [Acinetobacter sp. NCTC 10304]
gi|407931533|ref|YP_006847176.1| transcription termination factor Rho [Acinetobacter baumannii
TYTH-1]
gi|416146706|ref|ZP_11601369.1| transcription termination factor Rho [Acinetobacter baumannii
AB210]
gi|417546513|ref|ZP_12197599.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC032]
gi|417548386|ref|ZP_12199467.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-18]
gi|417554319|ref|ZP_12205388.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-81]
gi|417562300|ref|ZP_12213179.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC137]
gi|417563998|ref|ZP_12214872.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC143]
gi|417571318|ref|ZP_12222175.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC189]
gi|417572600|ref|ZP_12223454.1| transcription termination factor Rho [Acinetobacter baumannii
Canada BC-5]
gi|417576126|ref|ZP_12226971.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-17]
gi|417871240|ref|ZP_12516183.1| transcription termination factor Rho [Acinetobacter baumannii
ABNIH1]
gi|417875910|ref|ZP_12520710.1| transcription termination factor Rho [Acinetobacter baumannii
ABNIH2]
gi|417879596|ref|ZP_12524153.1| transcription termination factor Rho [Acinetobacter baumannii
ABNIH3]
gi|417882316|ref|ZP_12526618.1| transcription termination factor Rho [Acinetobacter baumannii
ABNIH4]
gi|421201537|ref|ZP_15658696.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC109]
gi|421201759|ref|ZP_15658914.1| transcription termination factor Rho [Acinetobacter baumannii AC12]
gi|421454208|ref|ZP_15903557.1| transcription termination factor Rho [Acinetobacter baumannii
IS-123]
gi|421535315|ref|ZP_15981577.1| transcription termination factor Rho [Acinetobacter baumannii AC30]
gi|421622207|ref|ZP_16063114.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC074]
gi|421625751|ref|ZP_16066597.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC098]
gi|421631295|ref|ZP_16071980.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC180]
gi|421634180|ref|ZP_16074799.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-13]
gi|421642773|ref|ZP_16083284.1| transcription termination factor Rho [Acinetobacter baumannii
IS-235]
gi|421645684|ref|ZP_16086148.1| transcription termination factor Rho [Acinetobacter baumannii
IS-251]
gi|421651984|ref|ZP_16092349.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC0162]
gi|421656390|ref|ZP_16096698.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-72]
gi|421657788|ref|ZP_16098036.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-83]
gi|421662086|ref|ZP_16102254.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC110]
gi|421666415|ref|ZP_16106507.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC087]
gi|421670926|ref|ZP_16110908.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC099]
gi|421675746|ref|ZP_16115665.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC065]
gi|421677358|ref|ZP_16117250.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC111]
gi|421688400|ref|ZP_16128100.1| transcription termination factor Rho [Acinetobacter baumannii
IS-143]
gi|421692672|ref|ZP_16132323.1| transcription termination factor Rho [Acinetobacter baumannii
IS-116]
gi|421693943|ref|ZP_16133575.1| transcription termination factor Rho [Acinetobacter baumannii
WC-692]
gi|421701239|ref|ZP_16140745.1| transcription termination factor Rho [Acinetobacter baumannii
IS-58]
gi|421702334|ref|ZP_16141818.1| transcription termination factor Rho [Acinetobacter baumannii
ZWS1122]
gi|421706073|ref|ZP_16145493.1| transcription termination factor Rho [Acinetobacter baumannii
ZWS1219]
gi|421789524|ref|ZP_16225782.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-82]
gi|421791448|ref|ZP_16227624.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-2]
gi|421796243|ref|ZP_16232310.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-21]
gi|421798676|ref|ZP_16234692.1| transcription termination factor Rho [Acinetobacter baumannii
Canada BC1]
gi|421805827|ref|ZP_16241703.1| transcription termination factor Rho [Acinetobacter baumannii
WC-A-694]
gi|421807853|ref|ZP_16243710.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC035]
gi|424053642|ref|ZP_17791173.1| transcription termination factor Rho [Acinetobacter baumannii
Ab11111]
gi|424056869|ref|ZP_17794386.1| transcription termination factor Rho [Acinetobacter nosocomialis
Ab22222]
gi|424061110|ref|ZP_17798600.1| transcription termination factor Rho [Acinetobacter baumannii
Ab33333]
gi|424064579|ref|ZP_17802063.1| transcription termination factor Rho [Acinetobacter baumannii
Ab44444]
gi|425741599|ref|ZP_18859744.1| transcription termination factor Rho [Acinetobacter baumannii
WC-487]
gi|425747261|ref|ZP_18865271.1| transcription termination factor Rho [Acinetobacter baumannii
WC-348]
gi|425753773|ref|ZP_18871641.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-113]
gi|445400254|ref|ZP_21429904.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-57]
gi|445439595|ref|ZP_21441720.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC021]
gi|445451456|ref|ZP_21444809.1| transcription termination factor Rho [Acinetobacter baumannii
WC-A-92]
gi|445459659|ref|ZP_21447682.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC047]
gi|445465153|ref|ZP_21449931.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC338]
gi|445481421|ref|ZP_21455865.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-78]
gi|445486298|ref|ZP_21457356.1| transcription termination factor Rho [Acinetobacter baumannii
AA-014]
gi|169150071|emb|CAM87965.1| transcription termination factor [Acinetobacter baumannii AYE]
gi|169153120|emb|CAP02194.1| transcription termination factor [Acinetobacter baumannii]
gi|183208523|gb|ACC55921.1| Transcription termination factor [Acinetobacter baumannii ACICU]
gi|213055225|gb|ACJ40127.1| transcription termination factor Rho [Acinetobacter baumannii
AB0057]
gi|213988657|gb|ACJ58956.1| transcription termination factor Rho [Acinetobacter baumannii
AB307-0294]
gi|260405331|gb|EEW98826.1| transcription termination factor Rho [Acinetobacter sp. RUH2624]
gi|260410101|gb|EEX03400.1| transcription termination factor Rho [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|322506825|gb|ADX02279.1| rho [Acinetobacter baumannii 1656-2]
gi|323516694|gb|ADX91075.1| transcription termination factor Rho [Acinetobacter baumannii
TCDC-AB0715]
gi|332726937|gb|EGJ58442.1| transcription termination factor Rho [Acinetobacter baumannii
6013150]
gi|332734154|gb|EGJ65286.1| transcription termination factor Rho [Acinetobacter baumannii
6013113]
gi|332737735|gb|EGJ68627.1| transcription termination factor Rho [Acinetobacter baumannii
6014059]
gi|333366087|gb|EGK48101.1| transcription termination factor Rho [Acinetobacter baumannii
AB210]
gi|342224526|gb|EGT89556.1| transcription termination factor Rho [Acinetobacter baumannii
ABNIH2]
gi|342226061|gb|EGT91037.1| transcription termination factor Rho [Acinetobacter baumannii
ABNIH1]
gi|342227694|gb|EGT92607.1| transcription termination factor Rho [Acinetobacter baumannii
ABNIH3]
gi|342238057|gb|EGU02499.1| transcription termination factor Rho [Acinetobacter baumannii
ABNIH4]
gi|347592382|gb|AEP05103.1| transcription termination factor Rho [Acinetobacter baumannii
MDR-ZJ06]
gi|385879649|gb|AFI96744.1| transcription termination factor Rho [Acinetobacter baumannii
MDR-TJ]
gi|395524882|gb|EJG12971.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC137]
gi|395551766|gb|EJG17775.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC189]
gi|395555754|gb|EJG21755.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC143]
gi|395563569|gb|EJG25222.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC109]
gi|395569347|gb|EJG30009.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-17]
gi|398328644|gb|EJN44767.1| transcription termination factor Rho [Acinetobacter baumannii AC12]
gi|400208168|gb|EJO39138.1| transcription termination factor Rho [Acinetobacter baumannii
Canada BC-5]
gi|400212975|gb|EJO43932.1| transcription termination factor Rho [Acinetobacter baumannii
IS-123]
gi|400384401|gb|EJP43079.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC032]
gi|400388685|gb|EJP51757.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-18]
gi|400390736|gb|EJP57783.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-81]
gi|404559958|gb|EKA65209.1| transcription termination factor Rho [Acinetobacter baumannii
IS-116]
gi|404561143|gb|EKA66379.1| transcription termination factor Rho [Acinetobacter baumannii
IS-143]
gi|404567841|gb|EKA72956.1| transcription termination factor Rho [Acinetobacter baumannii
IS-58]
gi|404569782|gb|EKA74867.1| transcription termination factor Rho [Acinetobacter baumannii
WC-692]
gi|404666792|gb|EKB34722.1| transcription termination factor Rho [Acinetobacter baumannii
Ab33333]
gi|404667128|gb|EKB35049.1| transcription termination factor Rho [Acinetobacter baumannii
Ab11111]
gi|404672662|gb|EKB40466.1| transcription termination factor Rho [Acinetobacter baumannii
Ab44444]
gi|407194506|gb|EKE65646.1| transcription termination factor Rho [Acinetobacter baumannii
ZWS1122]
gi|407194708|gb|EKE65845.1| transcription termination factor Rho [Acinetobacter baumannii
ZWS1219]
gi|407440402|gb|EKF46919.1| transcription termination factor Rho [Acinetobacter nosocomialis
Ab22222]
gi|407900114|gb|AFU36945.1| transcription termination factor Rho [Acinetobacter baumannii
TYTH-1]
gi|408505779|gb|EKK07498.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-72]
gi|408507105|gb|EKK08807.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC0162]
gi|408511339|gb|EKK12987.1| transcription termination factor Rho [Acinetobacter baumannii
IS-235]
gi|408518312|gb|EKK19838.1| transcription termination factor Rho [Acinetobacter baumannii
IS-251]
gi|408694617|gb|EKL40183.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC180]
gi|408696263|gb|EKL41805.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC074]
gi|408697845|gb|EKL43351.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC098]
gi|408704898|gb|EKL50254.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-13]
gi|408711577|gb|EKL56782.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-83]
gi|408714889|gb|EKL60019.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC110]
gi|409986868|gb|EKO43059.1| transcription termination factor Rho [Acinetobacter baumannii AC30]
gi|410381263|gb|EKP33829.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC065]
gi|410383223|gb|EKP35756.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC099]
gi|410388340|gb|EKP40779.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC087]
gi|410393114|gb|EKP45468.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC111]
gi|410398655|gb|EKP50866.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-82]
gi|410399758|gb|EKP51942.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-21]
gi|410402953|gb|EKP55056.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-2]
gi|410408089|gb|EKP60064.1| transcription termination factor Rho [Acinetobacter baumannii
WC-A-694]
gi|410412117|gb|EKP63977.1| transcription termination factor Rho [Acinetobacter baumannii
Canada BC1]
gi|410416032|gb|EKP67807.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC035]
gi|425492164|gb|EKU58434.1| transcription termination factor Rho [Acinetobacter baumannii
WC-487]
gi|425494149|gb|EKU60364.1| transcription termination factor Rho [Acinetobacter baumannii
WC-348]
gi|425497667|gb|EKU63772.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-113]
gi|444751827|gb|ELW76525.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC021]
gi|444755127|gb|ELW79720.1| transcription termination factor Rho [Acinetobacter baumannii
WC-A-92]
gi|444769783|gb|ELW93951.1| transcription termination factor Rho [Acinetobacter baumannii
AA-014]
gi|444770213|gb|ELW94370.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-78]
gi|444773853|gb|ELW97944.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC047]
gi|444779285|gb|ELX03279.1| transcription termination factor Rho [Acinetobacter baumannii
OIFC338]
gi|444783636|gb|ELX07495.1| transcription termination factor Rho [Acinetobacter baumannii
Naval-57]
gi|452955863|gb|EME61260.1| transcription termination factor Rho [Acinetobacter baumannii
MSP4-16]
Length = 422
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/345 (70%), Positives = 299/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ +DKL+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMDEDKLRKVWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|390950808|ref|YP_006414567.1| transcription termination factor Rho [Thiocystis violascens DSM
198]
gi|390427377|gb|AFL74442.1| transcription termination factor Rho [Thiocystis violascens DSM
198]
Length = 418
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/349 (69%), Positives = 301/349 (86%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD + G+I
Sbjct: 42 QAKRGEDISGDGVLEILSDGFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ +N ++PE +K++ LF+N TPL K L LE S E+IT R
Sbjct: 102 RPPKDGERYFALLKVNDINFDRPENAKSKILFENFTPLFANKRLTLEIGNGSTEDITART 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGL+V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDLVAPIGKGQRGLIVSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMAR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKLDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+H++RR+AE+R++P+IN+N+SGTRREELL+ +LQK+W+LRK+L+ +
Sbjct: 342 EIHMDRRIAERRIFPSININRSGTRREELLMGPAELQKMWILRKILHPM 390
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/302 (44%), Positives = 170/302 (56%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++A Q+ +E+ V R RKQ+L+FAI K + K GE I GDG LE+L DGFG
Sbjct: 6 LKKTPVPELVALAQS--MEIEGVGRSRKQDLIFAILKAQAKRGEDISGDGVLEILSDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNG---------------- 475
FLRS ++Y+A DDIY+SPSQIRRF L TG G+IR PK+G
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVNDINFDR 123
Query: 476 ----------ERYFALLKIKKVN------------------------------VASPKSG 495
E + L K++ V+ PK+G
Sbjct: 124 PENAKSKILFENFTPLFANKRLTLEIGNGSTEDITARTIDLVAPIGKGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH + +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 184 KTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKLDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|307546375|ref|YP_003898854.1| transcription termination factor Rho [Halomonas elongata DSM 2581]
gi|307218399|emb|CBV43669.1| transcription termination factor Rho [Halomonas elongata DSM 2581]
Length = 419
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/370 (66%), Positives = 311/370 (84%), Gaps = 2/370 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL GD + G+IR
Sbjct: 43 AKSGEAIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ ++N +KPE +K++ LF+NLTPL P++ L +E S E++T RII
Sbjct: 103 PPKEGERYFALLKVSQINFDKPENAKHKILFENLTPLFPQERLRMEIGNGSTEDLTARII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL++PIGKGQRGLLV+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+
Sbjct: 163 DLVSPIGKGQRGLLVSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV++LLDSITRLARAYNTV+P+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKRDVVVLLDSITRLARAYNTVVPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
HL+R+LAEKRVYPA+N+ +SGTRRE+L+ +D++Q++W+LRKLL M + F I
Sbjct: 343 AHLDRKLAEKRVYPALNIRRSGTRREDLIASEDEMQRMWILRKLLNP--MEDVAATEFLI 400
Query: 362 KRTIPVEKNL 371
R + NL
Sbjct: 401 DRLKDTKTNL 410
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKRDVVVLLDSITRLARAYNTVVPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
D+ ++++ R RKQ+++FAI KK K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 DMGIDNLARSRKQDIIFAILKKHAKSGEAIYGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL G G+IR PK GERYFALLK+ ++N P++ K IL
Sbjct: 80 YVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQINFDKPENAKHKIL 132
>gi|163748718|ref|ZP_02155971.1| transcription termination factor Rho [Shewanella benthica KT99]
gi|161331828|gb|EDQ02632.1| transcription termination factor Rho [Shewanella benthica KT99]
Length = 422
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/351 (70%), Positives = 302/351 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSGDASYLAGPDDIYVSPSQIRRFSMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH ++ L +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVSEVNYDKPENSRNKILFENLTPLHAEERLRMERGNGSTEDITSRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ++A +IT N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNMAQSITHNNPDVVLMVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGG+D+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGIDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L+ + S
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTPDELQKMWILRKILHPMDEVS 394
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 152/302 (50%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + ++ Q +++V + R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTSISDLVKLAQ--EMKVENTARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDG-------------------FGFLR--SQGSNYMA---SSDDIYLS 450
D S PD FG +R +G Y A S+ Y
Sbjct: 64 FLRSGDASYLAGPDDIYVSPSQIRRFSMRTGDTIFGKIRPPKEGERYFALLKVSEVNYDK 123
Query: 451 PSQIRR---FNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
P R F T + + +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHAEERLRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ++A +IT N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQNMAQSITHNNPDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGG+D+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGIDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|392953154|ref|ZP_10318708.1| transcription termination factor Rho [Hydrocarboniphaga effusa
AP103]
gi|391858669|gb|EIT69198.1| transcription termination factor Rho [Hydrocarboniphaga effusa
AP103]
Length = 582
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 239/348 (68%), Positives = 297/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K G+ I DG LE++ DG+GFLR S+Y+A DD+YLSPSQIRRFNL TGD + G +R
Sbjct: 206 AKRGDHIMADGVLEIMQDGYGFLRGPDSSYLAGPDDVYLSPSQIRRFNLRTGDSIAGRVR 265
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLK+ +N E PE+SK + F+NLTPL K +ER + E+IT R+I
Sbjct: 266 SPKDNERYFALLKVDTINFEPPEVSKRKVSFENLTPLFADKQFKMERGNGTTEDITARVI 325
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP GKGQRGLLVA PK+GK+I++Q+IA ++ N+ + +IV+LIDERPEEVT+MQR+
Sbjct: 326 DIVAPFGKGQRGLLVAPPKAGKTIMMQNIAQSLAANYPDVYLIVLLIDERPEEVTDMQRT 385
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDS+TRLARAYNTV P+SG
Sbjct: 386 VRGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSLTRLARAYNTVAPSSG 445
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVD+NALQ+PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME
Sbjct: 446 KVLSGGVDANALQKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNME 505
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HLERR+AEKRV+PAIN+N+SGTR+EEL++ D L K+W+LRKLL+S+
Sbjct: 506 LHLERRIAEKRVFPAININRSGTRKEELMMNDRDLNKVWILRKLLHSM 553
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 147/301 (48%), Gaps = 87/301 (28%)
Query: 373 KDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------- 419
K A L LAE+ L + ++ R RKQ+L+FAI + K G+ I
Sbjct: 172 KTAAELLELAES----LGLENIARTRKQDLVFAILRNAAKRGDHIMADGVLEIMQDGYGF 227
Query: 420 ----DGSLEVLPDGF-------------------GFLRSQGSN--YMA--SSDDIYLSPS 452
D S PD G +RS N Y A D I P
Sbjct: 228 LRGPDSSYLAGPDDVYLSPSQIRRFNLRTGDSIAGRVRSPKDNERYFALLKVDTINFEPP 287
Query: 453 QIRR----FNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGK 496
++ + F T + + ++ + NG ++ + + VA PK+GK
Sbjct: 288 EVSKRKVSFENLTPLFADKQFKMERGNGTTEDITARVIDIVAPFGKGQRGLLVAPPKAGK 347
Query: 497 SIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------- 548
+I++Q+IA ++ N+ + +IV+LIDERPEEVT+MQR+VRGEV+ASTFDEPA
Sbjct: 348 TIMMQNIAQSLAANYPDVYLIVLLIDERPEEVTDMQRTVRGEVVASTFDEPASRHVQVAE 407
Query: 549 -------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAA 589
L + +LARAYNTV P+SGKVL+GGVD+NALQ+PKRFFGAA
Sbjct: 408 MVIEKAKRLVEHKRDVVILLDSLTRLARAYNTVAPSSGKVLSGGVDANALQKPKRFFGAA 467
Query: 590 R 590
R
Sbjct: 468 R 468
>gi|262281023|ref|ZP_06058806.1| transcription termination factor Rho [Acinetobacter calcoaceticus
RUH2202]
gi|262257923|gb|EEY76658.1| transcription termination factor Rho [Acinetobacter calcoaceticus
RUH2202]
Length = 422
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/345 (70%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTSRVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVIASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVIASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ DD L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMDDDNLRKVWILRKLLHPM 390
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEVIASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVIASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 78/105 (74%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIR
Sbjct: 28 RNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 88 RFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|359394072|ref|ZP_09187125.1| Transcription termination factor Rho [Halomonas boliviensis LC1]
gi|448748258|ref|ZP_21729899.1| Transcription termination factor Rho [Halomonas titanicae BH1]
gi|357971319|gb|EHJ93764.1| Transcription termination factor Rho [Halomonas boliviensis LC1]
gi|445564139|gb|ELY20266.1| Transcription termination factor Rho [Halomonas titanicae BH1]
Length = 419
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/369 (67%), Positives = 310/369 (84%), Gaps = 2/369 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL GD + G+IR
Sbjct: 44 KSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYISPSQIRRFNLRKGDSISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ ++N ++PE +K++ LF+NLTPL P + +E S E++T RIID
Sbjct: 104 PKEGERYFALLKVSQINFDRPENAKHKILFENLTPLFPDDRMRMEIGNGSTEDLTARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGLLV+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+V
Sbjct: 164 LTAPIGKGQRGLLVSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEA 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R+LAE+RV+PAIN+ +SGTRRE+LL +D++Q++W+LRKLL + T+ T F I
Sbjct: 344 HLDRKLAERRVFPAINIRRSGTRREDLLASEDEMQRMWILRKLLNPMEDTAATE--FLID 401
Query: 363 RTIPVEKNL 371
R + NL
Sbjct: 402 RLKDTKTNL 410
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FAI KK K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL G G+IR PK GERYFALLK+ ++N P++ K IL
Sbjct: 80 YISPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQINFDRPENAKHKIL 132
>gi|127511271|ref|YP_001092468.1| transcription termination factor Rho [Shewanella loihica PV-4]
gi|126636566|gb|ABO22209.1| transcription termination factor Rho [Shewanella loihica PV-4]
Length = 421
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/352 (70%), Positives = 300/352 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 43 AKSGEDIFGGGVLEILQDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE S+++ LF+NLTPLH ++ + +ER S E+IT RI+
Sbjct: 103 PPKEGERYFALLKVSEVNFDKPENSRSKILFENLTPLHAEERIRMERGNGSTEDITARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +++V+LIDERPEEVTEMQR
Sbjct: 163 DLCSPIGKGQRGLIVAPPKAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L + S
Sbjct: 343 LHLSRKAAEKRVFPAIDFNRSGTRREEKLTTPDELQKMWILRKILNPMDEVS 394
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 150/286 (52%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL-----------------PDGF 430
D+++ ++ R RKQ+++FAI K K GE IFG G LE+L PD
Sbjct: 20 DMKIENMARARKQDIIFAILKAHAKSGEDIFGGGVLEILQDGFGFLRSADGSYLAGPDDI 79
Query: 431 GFLRSQGSNY-MASSDDIY---LSPSQIRRF---------------NLHTGILWKG---- 467
SQ + M + D I+ P + R+ N + IL++
Sbjct: 80 YVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVSEVNFDKPENSRSKILFENLTPL 139
Query: 468 ----EIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNH 511
IR+ + NG +I + + VA PK+GK+++LQ+IA +IT N+
Sbjct: 140 HAEERIRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPPKAGKTLLLQNIAQSITYNN 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 200 PEVVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|392380883|ref|YP_005030079.1| transcription termination factor Rho [Azospirillum brasilense
Sp245]
gi|356875847|emb|CCC96595.1| transcription termination factor Rho [Azospirillum brasilense
Sp245]
Length = 418
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/346 (69%), Positives = 303/346 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LEVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG+IR PK+GE
Sbjct: 49 IYGDGVLEVLQDGFGFLRSPEANYLPGPDDIYVSPSQVRRFSLRTGDTVEGQIRAPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + P+ ++R FDNLTPL+P++ L +E + +K+N TGRIIDL+AP+
Sbjct: 109 RYFALLKVNTINFDAPDKVRHRINFDNLTPLYPEERLRMEVDDPTKKNYTGRIIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+I TNH EA +IV+LIDERPEEVT+M RSVRGEVI
Sbjct: 169 GKGQRGLIVAPPRTGKTVMLQNIAHSIATNHPEAYLIVLLIDERPEEVTDMARSVRGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
L++KR +PAI+++KSGTR+EELL+ + K+W+LR++L + +T
Sbjct: 349 LSDKRTFPAIDISKSGTRKEELLVDKGTISKMWILRRILMPMGVTD 394
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+I TNH EA +IV+LIDERPEEVT+M RSVRGEVI+STFDEPA
Sbjct: 177 VAPPRTGKTVMLQNIAHSIATNHPEAYLIVLLIDERPEEVTDMARSVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 78/105 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L++ + LRKQ++MFAI K+ + I+GDG LEVL DGFGFLRS +NY+ DDI
Sbjct: 20 ELQIENASTLRKQDMMFAILKQLAENDVPIYGDGVLEVLQDGFGFLRSPEANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
Y+SPSQ+RRF+L TG +G+IR PK+GERYFALLK+ +N +P
Sbjct: 80 YVSPSQVRRFSLRTGDTVEGQIRAPKDGERYFALLKVNTINFDAP 124
>gi|333985972|ref|YP_004515182.1| transcription termination factor Rho [Methylomonas methanica MC09]
gi|333810013|gb|AEG02683.1| transcription termination factor Rho [Methylomonas methanica MC09]
Length = 418
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/363 (67%), Positives = 301/363 (82%), Gaps = 2/363 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFGDG LE+L DGFGFLR+ G +Y+A DDIY+SPSQIRRF L TGD V G+I
Sbjct: 42 QAKSGEDIFGDGVLEILQDGFGFLRTPGCSYLAGPDDIYVSPSQIRRFGLRTGDTVSGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GERYFA+LK++ +N E PE +KN+ F NLTPL K LE+ + E++T RI
Sbjct: 102 RPPKEGERYFAMLKVESINFESPEHAKNKISFSNLTPLFANKRFRLEQGNGTSEDLTARI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGL+V+ PK+GK++I+Q IAHAI + E +IV+LIDERPEEVTEM+R
Sbjct: 162 IDLVAPIGKGQRGLIVSPPKAGKTMIMQSIAHAIAEKNPECYLIVLLIDERPEEVTEMER 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
VRGEV++STFDEPA RHVQVA+MV+EKA+R+VE K DV+ILLDSITRLARAYN V+P+S
Sbjct: 222 CVRGEVVSSTFDEPASRHVQVADMVIEKARRMVEHKHDVVILLDSITRLARAYNMVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVD+NAL++PKRFFGAARNIEEGGSLTIIATAL+ETGSRMD+VI+EEFKGTGNM
Sbjct: 282 GKLLSGGVDANALEKPKRFFGAARNIEEGGSLTIIATALVETGSRMDEVIFEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFF 360
E+HLER++AEKR+YPAIN+N+SGTRREE L+ D+LQK W+LRK+L M S F
Sbjct: 342 ELHLERKIAEKRIYPAININRSGTRREEYLVDPDELQKTWILRKILQP--MDELAASEFL 399
Query: 361 IKR 363
+ +
Sbjct: 400 LGK 402
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 89/120 (74%), Gaps = 2/120 (1%)
Query: 380 VLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSN 439
++A +++ LE ++ R RKQEL+F+I KK+ K GE IFGDG LE+L DGFGFLR+ G +
Sbjct: 14 IIAIAESLGLE--NIDRARKQELIFSILKKQAKSGEDIFGDGVLEILQDGFGFLRTPGCS 71
Query: 440 YMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
Y+A DDIY+SPSQIRRF L TG G+IR PK GERYFA+LK++ +N SP+ K+ I
Sbjct: 72 YLAGPDDIYVSPSQIRRFGLRTGDTVSGKIRPPKEGERYFAMLKVESINFESPEHAKNKI 131
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++I+Q IAHAI + E +IV+LIDERPEEVTEM+R VRGEV++STFDEPA
Sbjct: 177 VSPPKAGKTMIMQSIAHAIAEKNPECYLIVLLIDERPEEVTEMERCVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGK+L+GGVD+NAL++
Sbjct: 237 SRHVQVADMVIEKARRMVEHKHDVVILLDSITRLARAYNMVVPSSGKLLSGGVDANALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
>gi|120597336|ref|YP_961910.1| transcription termination factor Rho [Shewanella sp. W3-18-1]
gi|146294519|ref|YP_001184943.1| transcription termination factor Rho [Shewanella putrefaciens
CN-32]
gi|153002456|ref|YP_001368137.1| transcription termination factor Rho [Shewanella baltica OS185]
gi|386315259|ref|YP_006011424.1| transcription termination factor Rho [Shewanella putrefaciens 200]
gi|120557429|gb|ABM23356.1| transcription termination factor Rho [Shewanella sp. W3-18-1]
gi|145566209|gb|ABP77144.1| transcription termination factor Rho [Shewanella putrefaciens
CN-32]
gi|151367074|gb|ABS10074.1| transcription termination factor Rho [Shewanella baltica OS185]
gi|319427884|gb|ADV55958.1| transcription termination factor Rho [Shewanella putrefaciens 200]
Length = 421
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/351 (70%), Positives = 299/351 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH ++ + +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ IA +I+ N+ E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQGIAQSISYNNPEVVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R+ AEKRV+PAI+ N+SGTRREE L ++LQK+W+LRK+L + S
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTQEELQKMWILRKILNPMDEVS 394
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 153/302 (50%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + +++ + + LE ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTPISDLVSLAENMKLE--NMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDGFGFLRSQGSNY-MASSDDIY---LSPSQIRRF------------- 457
DGS PD SQ + M + D I+ P + R+
Sbjct: 64 FLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVNFDK 123
Query: 458 --NLHTGILWKG--------EIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
N IL++ +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ IA +I+ N+ E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQGIAQSISYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|126176120|ref|YP_001052269.1| transcription termination factor Rho [Shewanella baltica OS155]
gi|160877175|ref|YP_001556491.1| transcription termination factor Rho [Shewanella baltica OS195]
gi|217975025|ref|YP_002359776.1| transcription termination factor Rho [Shewanella baltica OS223]
gi|373951221|ref|ZP_09611182.1| transcription termination factor Rho [Shewanella baltica OS183]
gi|378710390|ref|YP_005275284.1| transcription termination factor Rho [Shewanella baltica OS678]
gi|386322960|ref|YP_006019077.1| transcription termination factor Rho [Shewanella baltica BA175]
gi|386342875|ref|YP_006039241.1| transcription termination factor Rho [Shewanella baltica OS117]
gi|418022507|ref|ZP_12661494.1| transcription termination factor Rho [Shewanella baltica OS625]
gi|125999325|gb|ABN63400.1| transcription termination factor Rho [Shewanella baltica OS155]
gi|160862697|gb|ABX51231.1| transcription termination factor Rho [Shewanella baltica OS195]
gi|217500160|gb|ACK48353.1| transcription termination factor Rho [Shewanella baltica OS223]
gi|315269379|gb|ADT96232.1| transcription termination factor Rho [Shewanella baltica OS678]
gi|333817105|gb|AEG09771.1| transcription termination factor Rho [Shewanella baltica BA175]
gi|334865276|gb|AEH15747.1| transcription termination factor Rho [Shewanella baltica OS117]
gi|353538732|gb|EHC08287.1| transcription termination factor Rho [Shewanella baltica OS625]
gi|373887821|gb|EHQ16713.1| transcription termination factor Rho [Shewanella baltica OS183]
Length = 421
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/351 (70%), Positives = 299/351 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+NLTPLH ++ + +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ IA +I+ N+ E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQGIAQSISYNNPEVVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R+ AEKRV+PAI+ N+SGTRREE L ++LQK+W+LRK+L + S
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTQEELQKMWILRKILNPMDEVS 394
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 153/302 (50%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG------------ 419
LKD + +++ + + LE ++ R RKQ+++F+I K K GE IFG
Sbjct: 6 LKDTPISDLVSLAENMKLE--NMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 420 -----DGSLEVLPDGFGFLRSQGSNY-MASSDDIY---LSPSQIRRF------------- 457
DGS PD SQ + M + D I+ P + R+
Sbjct: 64 FLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVNFDK 123
Query: 458 --NLHTGILWKG--------EIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
N IL++ +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ IA +I+ N+ E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQGIAQSISYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|121998834|ref|YP_001003621.1| transcription termination factor Rho [Halorhodospira halophila SL1]
gi|121590239|gb|ABM62819.1| transcription termination factor Rho [Halorhodospira halophila SL1]
Length = 419
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/348 (69%), Positives = 302/348 (86%), Gaps = 1/348 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K G+ I+GDG LE+L DGFGFLRS ++YMA DDIY+SPSQIRRF L TGD + G+IR
Sbjct: 44 KNGDSIYGDGVLEILQDGFGFLRSADASYMAGPDDIYVSPSQIRRFALRTGDTITGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N E PE +KN+ LF+NLTPL + + +ER S E++T R+ID
Sbjct: 104 PKDGERYFALLKVDQINFEPPEAAKNKVLFENLTPLFTRDRMRMERGNGSTEDLTARVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+APIGKGQRGL+V+ PK+GK+++LQ++A +IT N+ E +IV+LIDERPEEVTE RSV
Sbjct: 164 LVAPIGKGQRGLIVSPPKAGKTMMLQNVAQSITYNYPECYLIVLLIDERPEEVTEFARSV 223
Query: 183 -RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
E ++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDS+TRLARAYNTV+P+SG
Sbjct: 224 LSAETVSSTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSVTRLARAYNTVVPSSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTI+ATAL+ETGSRMD+VIYEEFKGTGNME
Sbjct: 284 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTILATALVETGSRMDEVIYEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+H++R++AEKR+YPAI+LN+SGTRREELL+ ++LQK W+LRKLL+++
Sbjct: 344 LHMDRKIAEKRIYPAIHLNRSGTRREELLMTPEELQKTWILRKLLHNM 391
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 137/284 (48%), Gaps = 84/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL-----------------PDGFGFL 433
+ R RKQ+++FAI K K G+ I+GDG LE+L PD
Sbjct: 23 IEGTARSRKQDIIFAILKAHAKNGDSIYGDGVLEILQDGFGFLRSADASYMAGPDDIYVS 82
Query: 434 RSQ---------------------GSNYMA--SSDDIYLSPSQIRR----FNLHTGILWK 466
SQ G Y A D I P + + F T + +
Sbjct: 83 PSQIRRFALRTGDTITGKIRPPKDGERYFALLKVDQINFEPPEAAKNKVLFENLTPLFTR 142
Query: 467 GEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSEA 514
+R+ + NG ++ + + V+ PK+GK+++LQ++A +IT N+ E
Sbjct: 143 DRMRMERGNGSTEDLTARVIDLVAPIGKGQRGLIVSPPKAGKTMMLQNVAQSITYNYPEC 202
Query: 515 IMIVMLIDERPEEVTEMQRSV-RGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTE RSV E ++STFDEPA
Sbjct: 203 YLIVLLIDERPEEVTEFARSVLSAETVSSTFDEPASRHVQVAEMVIEKAKRLVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSVTRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAAR 306
>gi|110835324|ref|YP_694183.1| transcription termination factor Rho [Alcanivorax borkumensis SK2]
gi|254429860|ref|ZP_05043567.1| transcription termination factor Rho [Alcanivorax sp. DG881]
gi|110648435|emb|CAL17911.1| transcription termination factor Rho [Alcanivorax borkumensis SK2]
gi|196196029|gb|EDX90988.1| transcription termination factor Rho [Alcanivorax sp. DG881]
Length = 419
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/369 (66%), Positives = 309/369 (83%), Gaps = 2/369 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K G I+GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KNGSDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFA+LK+ ++N ++PE +KN+ LF+NLTPL P + L++E S E+IT R+ID
Sbjct: 104 PKDGERYFAMLKVNEINFDRPENAKNKILFENLTPLFPTQRLVMEIGNGSTEDITTRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+APIGKGQRGL+VA PK+GK+++LQ +A +I N+ E MIV+LIDERPEEVTEM R+V
Sbjct: 164 LVAPIGKGQRGLIVAPPKAGKTMLLQSVAQSIARNNPETHMIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV P+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVQPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R++AEKRV+PA+N+ KSGTRREE L+ +D+LQK+W+LRK+L+ M F I
Sbjct: 344 HLDRKVAEKRVFPAMNIRKSGTRREERLVSEDELQKMWILRKVLHP--MDEIGAMEFLID 401
Query: 363 RTIPVEKNL 371
R + NL
Sbjct: 402 RMKQTKTNL 410
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 159/286 (55%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + ++ R RKQ+++F+I K+ K G I+GDG LE+L DGFGFLRS +Y+A DDI
Sbjct: 20 ELGLENLARTRKQDVIFSILKRAAKNGSDIYGDGVLEILQDGFGFLRSAEGSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL------- 500
Y+SPSQIRRFNL TG G+IR PK+GERYFA+LK+ ++N P++ K+ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFAMLKVNEINFDRPENAKNKILFENLTPL 139
Query: 501 ---QHIAHAITTNHSEAI------------------------------------------ 515
Q + I +E I
Sbjct: 140 FPTQRLVMEIGNGSTEDITTRVIDLVAPIGKGQRGLIVAPPKAGKTMLLQSVAQSIARNN 199
Query: 516 ----MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
MIV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 200 PETHMIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKQD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P+SGKVLTGGVD++AL++PKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVQPSSGKVLTGGVDAHALEKPKRFFGAAR 305
>gi|222053784|ref|YP_002536146.1| transcription termination factor Rho [Geobacter daltonii FRC-32]
gi|221563073|gb|ACM19045.1| transcription termination factor Rho [Geobacter daltonii FRC-32]
Length = 415
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 302/344 (87%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNLHTGD V G+IR PK GE
Sbjct: 49 IFGEGVLETLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E P++++++ LFDNLTPL+P++ L LE + EN++ R+++LIAPI
Sbjct: 109 RYFALLKVESVNHESPDVARDKILFDNLTPLYPEEKLKLET---TPENMSMRVMELIAPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVFLIVLLIDERPEEVTDMQRSVNGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RH+QVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP SGK+L+GG
Sbjct: 226 SSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPPSGKILSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+HL+R+
Sbjct: 286 VDSNALHKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELLI+ + L +IW+LRK+L+ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLIEKNSLNRIWILRKVLHPMNV 389
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 162/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQ+L+FAI +T+ IFG+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLETLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNLHTG G+IR PK GERYFALLK++ VN
Sbjct: 81 VSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVESVNHESPDVARDKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q+IA++I NH E
Sbjct: 141 PEEKLKLETTPENMSMRVMELIAPIGKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVF 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVNGEVISSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVIPPSGKILSGGVDSNALHKPKRFFGAAR 302
>gi|387771820|ref|ZP_10127977.1| transcription termination factor Rho [Haemophilus parahaemolyticus
HK385]
gi|386908205|gb|EIJ72903.1| transcription termination factor Rho [Haemophilus parahaemolyticus
HK385]
Length = 420
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/345 (70%), Positives = 297/345 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQR L+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 224 VRGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVVILLDSITRLARAYNTVTPVSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+R++PAI N+SGTR+++LL+ ++ QK W+LRK+L
Sbjct: 344 LHLSRKIAERRIFPAIEFNRSGTRKDDLLMSPEEHQKTWMLRKVL 388
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 145/294 (49%), Gaps = 85/294 (28%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSL 423
L E + + ++ RLRKQ+++FAI K+ K GE IFG D S
Sbjct: 14 LVEMGENQMGLENLARLRKQDIVFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSADSSY 73
Query: 424 EVLPDGFGFLRSQ---------------------GSNYMA-------SSDDIYLSPSQIR 455
PD SQ G Y A + D +S S+I
Sbjct: 74 LAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKIL 133
Query: 456 RFNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHI 503
NL T + +R+ + NG +I + + VA PK+GK+++LQ+I
Sbjct: 134 FENL-TPLHANSRLRMERGNGSTEDLTARILDLAAPIGKGQRALIVAPPKAGKTVLLQNI 192
Query: 504 AHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------- 548
A +IT N+ E +IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 193 AQSITHNYPECELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAK 252
Query: 549 ------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 253 RAVEHKKDVVILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|87120293|ref|ZP_01076188.1| transcription termination factor Rho [Marinomonas sp. MED121]
gi|86164396|gb|EAQ65666.1| transcription termination factor Rho [Marinomonas sp. MED121]
Length = 421
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/361 (68%), Positives = 306/361 (84%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIYGDGILEILQDGFGFLRSPDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N +KP+ +N+ LF+NLTPL + L++E S E++T RIID
Sbjct: 104 PKDGERYFALLKVNEINFDKPDSVRNKILFENLTPLFADQRLVMEAGNGSTEDVTSRIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+V+ PK+GK+ +LQ+IA+AIT N+ E +IV+LIDERPEEVTEM R+V
Sbjct: 164 LVAPMGKGQRALVVSPPKAGKTFMLQNIANAITRNNPETDLIVLLIDERPEEVTEMTRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL+RPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGN E+
Sbjct: 284 VLTGGVDANALERPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNCEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R++AEKR +PAIN+ +SGTRRE+LL +D+LQ++W+LRKLL M + F I
Sbjct: 344 HLDRKIAEKRTFPAINIRRSGTRREDLLTSEDELQRMWILRKLLNP--MEDVAATEFLID 401
Query: 363 R 363
R
Sbjct: 402 R 402
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+ +LQ+IA+AIT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTFMLQNIANAITRNNPETDLIVLLIDERPEEVTEMTRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL+R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FAI K+ K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGIDNLSRSRKQDVIFAILKRHAKSGEDIYGDGILEILQDGFGFLRSPDSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N P S ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEINFDKPDSVRNKIL 132
>gi|307249459|ref|ZP_07531448.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858533|gb|EFM90600.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 420
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/345 (70%), Positives = 297/345 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGILEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +IT NH E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLAAPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 224 VRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPVSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI N+SGTR+++LL+ ++ + W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIEFNRSGTRKDDLLMSPEEHRNAWMLRKVL 388
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 142/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIIFAILKQHAKSGEDIFGQGILEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT NH E
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLAAPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNHPE 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 203 CELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|381150147|ref|ZP_09862016.1| transcription termination factor Rho [Methylomicrobium album BG8]
gi|380882119|gb|EIC27996.1| transcription termination factor Rho [Methylomicrobium album BG8]
Length = 418
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/353 (68%), Positives = 301/353 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G+ I+GDG LE+L DGFGFLR+ G +Y+A DDIY+SPSQIRRF+L TGD + G+I
Sbjct: 42 QAKAGDDIYGDGVLEILQDGFGFLRTPGCSYLAGPDDIYVSPSQIRRFSLKTGDTISGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFA+LK++++N E PE +KN+ F NLTPL + +LE+ + E+ITGRI
Sbjct: 102 RPPKDNERYFAMLKVEEINFEPPENTKNKIHFSNLTPLFAHERFVLEQGNGATEDITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGL+V+ PK+GK++ILQ +A AI + E +IV+LIDERPEEVTEM+R
Sbjct: 162 IDLVAPIGKGQRGLIVSPPKAGKTMILQALAQAIAEKNPECYLIVLLIDERPEEVTEMER 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
VRGEVI+STFDEP RHVQVAEMV+EKA+RLVE K DV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 CVRGEVISSTFDEPPTRHVQVAEMVIEKARRLVEHKHDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+LTGGVD+NAL++PKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VIYEEFKGTGNM
Sbjct: 282 GKILTGGVDANALEKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
E+HL+R++AEKR+YPAIN+N+SGTRREE L+ D LQK W+LRK+L + T+
Sbjct: 342 ELHLDRKIAEKRIYPAININRSGTRREEYLVDPDTLQKTWILRKILQPMDETA 394
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++ILQ +A AI + E +IV+LIDERPEEVTEM+R VRGEVI+STFDEP
Sbjct: 177 VSPPKAGKTMILQALAQAIAEKNPECYLIVLLIDERPEEVTEMERCVRGEVISSTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGK+LTGGVD+NAL++
Sbjct: 237 TRHVQVAEMVIEKARRLVEHKHDVVILLDSITRLARAYNTVVPSSGKILTGGVDANALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 85/111 (76%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + +V R RKQ+L+FAI KK+ K G+ I+GDG LE+L DGFGFLR+ G +Y+A DDIY
Sbjct: 21 LGLENVARSRKQDLIFAILKKQAKAGDDIYGDGVLEILQDGFGFLRTPGCSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
+SPSQIRRF+L TG G+IR PK+ ERYFA+LK++++N P++ K+ I
Sbjct: 81 VSPSQIRRFSLKTGDTISGKIRPPKDNERYFAMLKVEEINFEPPENTKNKI 131
>gi|240948381|ref|ZP_04752767.1| transcription termination factor Rho [Actinobacillus minor NM305]
gi|240297420|gb|EER47961.1| transcription termination factor Rho [Actinobacillus minor NM305]
Length = 420
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/347 (70%), Positives = 298/347 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 45 KSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRP 104
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+D
Sbjct: 105 PKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARILD 164
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQR L+VA PK+GK+++LQ+IA +IT NH E +IV+LIDERPEEVTEMQR+V
Sbjct: 165 LAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVTEMQRTV 224
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SGK
Sbjct: 225 RGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPVSGK 284
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+
Sbjct: 285 ILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEL 344
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R+++E+R++PAI N+SGTR+++LL+ ++ QK W+LRK+L +
Sbjct: 345 HLSRKISERRIFPAIEFNRSGTRKDDLLMTPEEHQKTWMLRKVLNPM 391
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 142/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE IFG D S PD
Sbjct: 24 LENLARLRKQDIIFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT NH E
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPE 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 203 CELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|244539422|dbj|BAH83465.1| transcription termination factor Rho [Candidatus Ishikawaella
capsulata Mpkobe]
Length = 428
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/348 (69%), Positives = 300/348 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRF+L TGD + G+IR
Sbjct: 53 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFSLRTGDTIAGKIRP 112
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ ++N +KPE ++++ LF+NLTPLH K L +ER S E++T R++D
Sbjct: 113 PKEGERYFALLKVNEINFDKPENTRSKILFENLTPLHANKRLRMERGNGSTEDLTARVLD 172
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG GQR L+VA PK+GK+++LQ+IA +IT NH + + IV+LIDERPEEVTEMQR V
Sbjct: 173 LASPIGCGQRSLIVAPPKAGKTVLLQNIAQSITCNHPDCVTIVLLIDERPEEVTEMQRLV 232
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+ VIASTFDEPA RH+QVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 233 KDAVIASTFDEPASRHIQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 292
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 293 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 352
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
HL R++AE+R++PAI+ N+SGTRREELL +LQK+W+LRK+++ ++
Sbjct: 353 HLSRKIAERRIFPAIDYNRSGTRREELLTSIPELQKMWILRKIIHPMS 400
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT NH + + IV+LIDERPEEVTEMQR V+ VIASTFDEPA
Sbjct: 186 VAPPKAGKTVLLQNIAQSITCNHPDCVTIVLLIDERPEEVTEMQRLVKDAVIASTFDEPA 245
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NAL R
Sbjct: 246 SRHIQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHR 305
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 306 PKRFFGAAR 314
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ RLRKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 32 LENLARLRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 91
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRF+L TG G+IR PK GERYFALLK+ ++N P++ +S IL
Sbjct: 92 PSQIRRFSLRTGDTIAGKIRPPKEGERYFALLKVNEINFDKPENTRSKIL 141
>gi|294142600|ref|YP_003558578.1| transcription termination factor Rho [Shewanella violacea DSS12]
gi|293329069|dbj|BAJ03800.1| transcription termination factor Rho [Shewanella violacea DSS12]
Length = 422
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/351 (70%), Positives = 301/351 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSGDASYLAGPDDIYVSPSQIRRFSMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+ + LF+NLTPLH ++ L +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVSEVNFDKPENSRTKILFENLTPLHAEERLRMERGNGSTEDITSRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ++A +IT N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNMAQSITHNNPDVVLMVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L+ + S
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTPDELQKMWILRKILHPMDEVS 394
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/286 (37%), Positives = 146/286 (51%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSLEVLPDGF 430
+++V + R RKQ+++F+I K K GE IFG D S PD
Sbjct: 20 EMKVENTARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFGFLRSGDASYLAGPDDI 79
Query: 431 GFLRSQGSNY-MASSDDIY---LSPSQIRRF---------------NLHTGILWKG---- 467
SQ + M + D I+ P + R+ N T IL++
Sbjct: 80 YVSPSQIRRFSMRTGDTIFGKIRPPKEGERYFALLKVSEVNFDKPENSRTKILFENLTPL 139
Query: 468 ----EIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNH 511
+R+ + NG +I + + VA PK+GK+++LQ++A +IT N+
Sbjct: 140 HAEERLRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPPKAGKTLLLQNMAQSITHNN 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
+ +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 200 PDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|46143472|ref|ZP_00135186.2| COG1158: Transcription termination factor [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207735|ref|YP_001052960.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165975706|ref|YP_001651299.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|190149518|ref|YP_001968043.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303251631|ref|ZP_07337804.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303252783|ref|ZP_07338943.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245060|ref|ZP_07527154.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307247232|ref|ZP_07529282.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307251776|ref|ZP_07533679.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307254015|ref|ZP_07535863.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307256273|ref|ZP_07538057.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307258470|ref|ZP_07540208.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307260704|ref|ZP_07542394.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307262836|ref|ZP_07544461.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|4127360|emb|CAA76933.1| Rho protein [Actinobacillus pleuropneumoniae]
gi|126096527|gb|ABN73355.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165875807|gb|ABY68855.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|189914649|gb|ACE60901.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648344|gb|EFL78540.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302649473|gb|EFL79656.1| transcription termination factor Rho [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306854048|gb|EFM86259.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306856290|gb|EFM88443.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306860777|gb|EFM92787.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306863041|gb|EFM94987.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306865237|gb|EFM97136.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306867475|gb|EFM99325.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306869625|gb|EFN01412.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306871851|gb|EFN03570.1| Transcription termination factor rho [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 420
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 298/348 (85%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGILEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +IT NH E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLAAPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 224 VRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPVSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AE+RV+PAI N+SGTR+++LL+ ++ + W+LRK+L +
Sbjct: 344 LHLSRKIAERRVFPAIEFNRSGTRKDDLLMSPEEHRNAWMLRKVLNPM 391
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 142/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIIFAILKQHAKSGEDIFGQGILEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT NH E
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLAAPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNHPE 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 203 CELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|407717118|ref|YP_006838398.1| transcription termination factor Rho [Cycloclasticus sp. P1]
gi|407257454|gb|AFT67895.1| transcription termination factor Rho [Cycloclasticus sp. P1]
Length = 418
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/344 (70%), Positives = 298/344 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K G+ ++GDG LE+L DGFGFLRS +++A DDIY+SPSQIRRF L TGD + G+IR
Sbjct: 44 KKGDDVYGDGVLEILSDGFGFLRSADGSFLAGPDDIYVSPSQIRRFGLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLK+ K+N EKPE +KN+ F +LTP+ P + L LE + E++T R+ID
Sbjct: 104 PKDSERYFALLKVDKLNYEKPEHAKNKIAFKDLTPIFPNERLTLEMGNGTTEDLTSRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIGKGQRGL+V+ PK+GK++ILQ++AH+I N+ E+ ++V+LIDERPEEVTEM R+V
Sbjct: 164 LVSPIGKGQRGLIVSPPKAGKTMILQNLAHSIAANNPESHLMVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVI+STFDEPA RHVQVAEMV+EKAKR+VE K+DVIILLDSITRL RAYNTV P+SGK
Sbjct: 224 KGEVISSTFDEPASRHVQVAEMVIEKAKRMVEHKRDVIILLDSITRLGRAYNTVAPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL+RPKRFFGAARNIEEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALERPKRFFGAARNIEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HLER++AEKR+YPAIN+N+SGTRREE L+ D LQK W+LRK+L
Sbjct: 344 HLERKIAEKRIYPAINVNRSGTRREEYLVDADILQKTWILRKIL 387
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++ILQ++AH+I N+ E+ ++V+LIDERPEEVTEM R+V+GEVI+STFDEPA
Sbjct: 177 VSPPKAGKTMILQNLAHSIAANNPESHLMVLLIDERPEEVTEMSRTVKGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV P+SGK+LTGGVD+NAL+R
Sbjct: 237 SRHVQVAEMVIEKAKRMVEHKRDVIILLDSITRLGRAYNTVAPSSGKILTGGVDANALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 77/112 (68%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V++ R KQ +F I KK K G+ ++GDG LE+L DGFGFLRS +++A DDI
Sbjct: 20 ELGVDNTGRSLKQTTVFQILKKIAKKGDDVYGDGVLEILSDGFGFLRSADGSFLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
Y+SPSQIRRF L TG G+IR PK+ ERYFALLK+ K+N P+ K+ I
Sbjct: 80 YVSPSQIRRFGLRTGDTISGKIRPPKDSERYFALLKVDKLNYEKPEHAKNKI 131
>gi|95929016|ref|ZP_01311761.1| transcription termination factor Rho [Desulfuromonas acetoxidans
DSM 684]
gi|95134917|gb|EAT16571.1| transcription termination factor Rho [Desulfuromonas acetoxidans
DSM 684]
Length = 489
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 237/344 (68%), Positives = 303/344 (88%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE+LPDGFGFLR+ +NY+ DDIY+SPSQIRRF+L TGD + G+IR PK GE
Sbjct: 123 IFGEGVLEILPDGFGFLRATDANYLPGPDDIYVSPSQIRRFSLRTGDTISGQIRPPKEGE 182
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ ++N E P +++ +TLFDNLTPLHP++ L+LE + +NI R+IDL++PI
Sbjct: 183 RYFALLKVSEINFEDPAVARKKTLFDNLTPLHPQERLVLE---TTSDNIPMRVIDLVSPI 239
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ++A++ITTNH EA +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 240 GKGQRGLIVAPPRTGKTVLLQNLANSITTNHPEAYLIVLLIDERPEEVTDMQRSVQGEVV 299
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV++KAKRLVE K+DV+ILLDSITRLARAYNTV+P SGK+L+GG
Sbjct: 300 SSTFDEPATRHVQVAEMVIQKAKRLVEHKRDVVILLDSITRLARAYNTVVPPSGKILSGG 359
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+ L+RR
Sbjct: 360 VDSNALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELVLDRR 419
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L +KR +PAI++NKSGTRREELL LQ++W+LRK+L ++ +
Sbjct: 420 LVDKRTFPAIDVNKSGTRREELLQDTTTLQRMWLLRKVLTTMNV 463
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 128/283 (45%), Positives = 167/283 (59%), Gaps = 80/283 (28%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL++ V +RKQ+++F+I IFG+G LE+LPDGFGFLR+ +NY+ DDI
Sbjct: 94 DLKIEGVAGMRKQDVIFSILSATAAQKGAIFGEGVLEILPDGFGFLRATDANYLPGPDDI 153
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------- 488
Y+SPSQIRRF+L TG G+IR PK GERYFALLK+ ++N
Sbjct: 154 YVSPSQIRRFSLRTGDTISGQIRPPKEGERYFALLKVSEINFEDPAVARKKTLFDNLTPL 213
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK+++LQ++A++ITTNH EA
Sbjct: 214 HPQERLVLETTSDNIPMRVIDLVSPIGKGQRGLIVAPPRTGKTVLLQNLANSITTNHPEA 273
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 274 YLIVLLIDERPEEVTDMQRSVQGEVVSSTFDEPATRHVQVAEMVIQKAKRLVEHKRDVVI 333
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 334 LLDSITRLARAYNTVVPPSGKILSGGVDSNALHKPKRFFGAAR 376
>gi|386389566|ref|ZP_10074380.1| transcription termination factor Rho [Haemophilus
paraphrohaemolyticus HK411]
gi|385695336|gb|EIG25898.1| transcription termination factor Rho [Haemophilus
paraphrohaemolyticus HK411]
Length = 420
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/345 (70%), Positives = 297/345 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQR L+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 224 VRGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVVILLDSITRLARAYNTVTPVSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+R++PAI N+SGTR+++LL+ ++ QK W+LRK+L
Sbjct: 344 LHLSRKIAERRIFPAIEFNRSGTRKDDLLMSPEEHQKTWMLRKVL 388
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 145/294 (49%), Gaps = 85/294 (28%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSL 423
L E + + ++ RLRKQ+++FAI K+ K GE IFG D S
Sbjct: 14 LVEIGENQMGLENLARLRKQDIVFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSADSSY 73
Query: 424 EVLPDGFGFLRSQ---------------------GSNYMA-------SSDDIYLSPSQIR 455
PD SQ G Y A + D +S S+I
Sbjct: 74 LAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKIL 133
Query: 456 RFNLHTGILWKGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHI 503
NL T + +R+ + NG +I + + VA PK+GK+++LQ+I
Sbjct: 134 FENL-TPLHANSRLRMERGNGSTEDLTARILDLAAPIGKGQRALIVAPPKAGKTVLLQNI 192
Query: 504 AHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------- 548
A +IT N+ E +IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 193 AQSITHNYPECELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAK 252
Query: 549 ------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 253 RAVEHKKDVVILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|253702396|ref|YP_003023585.1| transcription termination factor Rho [Geobacter sp. M21]
gi|251777246|gb|ACT19827.1| transcription termination factor Rho [Geobacter sp. M21]
Length = 415
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 301/344 (87%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNLHTGD V G+IR PK GE
Sbjct: 49 IFGEGVLETLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVAGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PE+++++ LFDNLTPL+P++ L LE + +N++ R+++LIAPI
Sbjct: 109 RYFALLKVETVNHESPEVARDKILFDNLTPLYPQEKLKLET---THDNMSTRVMELIAPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIAMNHPEVFLIVLLIDERPEEVTDMQRSVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RH+QVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP SGK+L+GG
Sbjct: 226 SSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPPSGKILSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+HL+R+
Sbjct: 286 VDSNALHKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELLI L +IW+LRK+L+ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLIDKASLNRIWILRKVLHPMNV 389
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 163/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQ+L+FAI +T+ IFG+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLETLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNLHTG G+IR PK GERYFALLK++ VN
Sbjct: 81 VSPSQIRRFNLHTGDTVAGQIRPPKEGERYFALLKVETVNHESPEVARDKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q+IA++I NH E
Sbjct: 141 PQEKLKLETTHDNMSTRVMELIAPIGKGQRGLIVAPPRTGKTMLIQNIANSIAMNHPEVF 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVISSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVIPPSGKILSGGVDSNALHKPKRFFGAAR 302
>gi|197120074|ref|YP_002140501.1| transcription termination factor Rho [Geobacter bemidjiensis Bem]
gi|197089434|gb|ACH40705.1| transcription termination factor Rho [Geobacter bemidjiensis Bem]
Length = 415
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 301/344 (87%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNLHTGD V G+IR PK GE
Sbjct: 49 IFGEGVLETLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVAGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PE+++++ LFDNLTPL+P++ L LE + +N++ R+++LIAPI
Sbjct: 109 RYFALLKVETVNHESPEVARDKILFDNLTPLYPQEKLKLET---THDNMSTRVMELIAPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIAMNHPEVFLIVLLIDERPEEVTDMQRSVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RH+QVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP SGK+L+GG
Sbjct: 226 SSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPPSGKILSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+HL+R+
Sbjct: 286 VDSNALHKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELLI L +IW+LRK+L+ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLIDKASLNRIWILRKVLHPMNV 389
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 163/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQ+L+FAI +T+ IFG+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLETLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNLHTG G+IR PK GERYFALLK++ VN
Sbjct: 81 VSPSQIRRFNLHTGDTVAGQIRPPKEGERYFALLKVETVNHESPEVARDKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q+IA++I NH E
Sbjct: 141 PQEKLKLETTHDNMSTRVMELIAPIGKGQRGLIVAPPRTGKTMLIQNIANSIAMNHPEVF 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVISSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVIPPSGKILSGGVDSNALHKPKRFFGAAR 302
>gi|294649380|ref|ZP_06726811.1| transcription termination factor Rho [Acinetobacter haemolyticus
ATCC 19194]
gi|292824750|gb|EFF83522.1| transcription termination factor Rho [Acinetobacter haemolyticus
ATCC 19194]
Length = 422
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/345 (70%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVIASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVIASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ +D L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMDEDNLRKVWILRKLLHPM 390
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEVIASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVIASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|322421629|ref|YP_004200852.1| transcription termination factor Rho [Geobacter sp. M18]
gi|320128016|gb|ADW15576.1| transcription termination factor Rho [Geobacter sp. M18]
Length = 415
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 301/344 (87%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNLHTGD V G+IR PK GE
Sbjct: 49 IFGEGVLETLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVAGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PE+++++ LFDNLTPL+P++ L LE + +N++ R+++L+API
Sbjct: 109 RYFALLKVETVNHESPEVARDKILFDNLTPLYPQEKLKLET---TPDNMSSRVMELVAPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIALNHPEVFLIVLLIDERPEEVTDMQRSVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RH+QVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP SGK+L+GG
Sbjct: 226 SSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPPSGKILSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+HL+R+
Sbjct: 286 VDSNALHKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELLI L +IW+LRK+L+ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLIDKASLNRIWILRKVLHPMNV 389
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 163/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQ+L+FAI +T+ IFG+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLETLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNLHTG G+IR PK GERYFALLK++ VN
Sbjct: 81 VSPSQIRRFNLHTGDTVAGQIRPPKEGERYFALLKVETVNHESPEVARDKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q+IA++I NH E
Sbjct: 141 PQEKLKLETTPDNMSSRVMELVAPIGKGQRGLIVAPPRTGKTMLIQNIANSIALNHPEVF 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVISSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVIPPSGKILSGGVDSNALHKPKRFFGAAR 302
>gi|302342171|ref|YP_003806700.1| transcription termination factor Rho [Desulfarculus baarsii DSM
2075]
gi|301638784|gb|ADK84106.1| transcription termination factor Rho [Desulfarculus baarsii DSM
2075]
Length = 468
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 239/343 (69%), Positives = 300/343 (87%), Gaps = 1/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LE+LPDGFGFLR+ NY+ DDIY+SPSQIRRFNL TGD + G+IR PK GE
Sbjct: 100 IYGEGVLEILPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLRTGDTISGQIRPPKEGE 159
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++K+N E PE+++++ LFDNL PL+P + + LE + K N + R++DL+ PI
Sbjct: 160 RYFALLKVEKINMEPPEVARDKILFDNLVPLYPDERIRLEVEAQPK-NFSIRVMDLMTPI 218
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IA+A+ NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 219 GKGQRGLIVAPPRTGKTMLLQNIANALAANHPEVTLIVLLIDERPEEVTDMQRSVKGEVI 278
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P SGK+L+GG
Sbjct: 279 SSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPPSGKILSGG 338
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL RPKRFFGAARNIE+GGSLTIIATALIETGSRMD+VI+EEFKGTGNME+HL+R+
Sbjct: 339 VDSNALHRPKRFFGAARNIEDGGSLTIIATALIETGSRMDEVIFEEFKGTGNMEIHLDRK 398
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L++KRV+PAI++N+SGTR+EELL+ + L +IW+LRKLL LT
Sbjct: 399 LSDKRVFPAIDINRSGTRKEELLLPESDLNRIWILRKLLGPLT 441
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 146/276 (52%), Gaps = 82/276 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRS--------------------- 435
+RKQEL+FA+ + + I+G+G LE+LPDGFGFLR+
Sbjct: 80 MRKQELIFALLTAQAERNGAIYGEGVLEILPDGFGFLRAPDYNYLPGPDDIYVSPSQIRR 139
Query: 436 -----------------QGSNYMA--SSDDIYLSPSQIRR----FNLHTGILWKGEIRV- 471
+G Y A + I + P ++ R F+ + IR+
Sbjct: 140 FNLRTGDTISGQIRPPKEGERYFALLKVEKINMEPPEVARDKILFDNLVPLYPDERIRLE 199
Query: 472 ----PKNGE-RYFALLKI-----KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 521
PKN R L+ + + VA P++GK+++LQ+IA+A+ NH E +IV+LI
Sbjct: 200 VEAQPKNFSIRVMDLMTPIGKGQRGLIVAPPRTGKTMLLQNIANALAANHPEVTLIVLLI 259
Query: 522 DERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCK 554
DERPEEVT+MQRSV+GEVI+STFDEPA L + +
Sbjct: 260 DERPEEVTDMQRSVKGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITR 319
Query: 555 LARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
LARAYNTV+P SGK+L+GGVDSNAL RPKRFFGAAR
Sbjct: 320 LARAYNTVVPPSGKILSGGVDSNALHRPKRFFGAAR 355
>gi|406039510|ref|ZP_11046865.1| transcription termination factor Rho [Acinetobacter ursingii DSM
16037 = CIP 107286]
Length = 422
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/345 (70%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DLI
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTSRVVDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ +D L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMDEDNLRKVWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|123440565|ref|YP_001004559.1| transcription termination factor Rho [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|238750655|ref|ZP_04612154.1| Transcription termination factor rho [Yersinia rohdei ATCC 43380]
gi|238759814|ref|ZP_04620971.1| Transcription termination factor rho [Yersinia aldovae ATCC 35236]
gi|238784755|ref|ZP_04628758.1| Transcription termination factor rho [Yersinia bercovieri ATCC
43970]
gi|238789358|ref|ZP_04633144.1| Transcription termination factor rho [Yersinia frederiksenii ATCC
33641]
gi|238794284|ref|ZP_04637897.1| Transcription termination factor rho [Yersinia intermedia ATCC
29909]
gi|238798895|ref|ZP_04642361.1| Transcription termination factor rho [Yersinia mollaretii ATCC
43969]
gi|332159795|ref|YP_004296372.1| transcription termination factor Rho [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|386310809|ref|YP_006006865.1| transcription termination factor Rho [Yersinia enterocolitica
subsp. palearctica Y11]
gi|418242057|ref|ZP_12868575.1| transcription termination factor Rho [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|420261140|ref|ZP_14763797.1| transcription termination factor Rho [Yersinia enterocolitica
subsp. enterocolitica WA-314]
gi|433551774|ref|ZP_20507815.1| Transcription termination factor Rho [Yersinia enterocolitica IP
10393]
gi|122087526|emb|CAL10307.1| transcription termination factor [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238701957|gb|EEP94517.1| Transcription termination factor rho [Yersinia aldovae ATCC 35236]
gi|238711045|gb|EEQ03264.1| Transcription termination factor rho [Yersinia rohdei ATCC 43380]
gi|238714351|gb|EEQ06360.1| Transcription termination factor rho [Yersinia bercovieri ATCC
43970]
gi|238717249|gb|EEQ09099.1| Transcription termination factor rho [Yersinia mollaretii ATCC
43969]
gi|238722501|gb|EEQ14155.1| Transcription termination factor rho [Yersinia frederiksenii ATCC
33641]
gi|238726368|gb|EEQ17909.1| Transcription termination factor rho [Yersinia intermedia ATCC
29909]
gi|318607666|emb|CBY29164.1| transcription termination factor Rho [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664025|gb|ADZ40669.1| transcription termination factor Rho [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330859825|emb|CBX70157.1| transcription termination factor rho [Yersinia enterocolitica
W22703]
gi|351778504|gb|EHB20655.1| transcription termination factor Rho [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|404511429|gb|EKA25307.1| transcription termination factor Rho [Yersinia enterocolitica
subsp. enterocolitica WA-314]
gi|431787443|emb|CCO70855.1| Transcription termination factor Rho [Yersinia enterocolitica IP
10393]
Length = 419
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LR++L+ +
Sbjct: 343 LHLSRKIAEKRVFPAIDFNRSGTRKEELLTTTEELQKMWILRRILHPM 390
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTVAGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|387128138|ref|YP_006296743.1| transcription termination factor Rho [Methylophaga sp. JAM1]
gi|386275200|gb|AFI85098.1| Transcription termination factor Rho [Methylophaga sp. JAM1]
Length = 419
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/347 (71%), Positives = 299/347 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K G+ ++ G LE+LPDGFGFLRS +Y+A DDIY+SPSQIRRF+L TGD ++G+IR
Sbjct: 44 KQGDDVYTTGVLELLPDGFGFLRSPEDSYVAGPDDIYVSPSQIRRFHLRTGDTIKGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+K+ ++N EKPE S+N+ F+NLTPL + LER S E++T RIID
Sbjct: 104 PKDSERYFALVKVDEINYEKPENSRNKVPFENLTPLFANERFNLERGNGSTEDLTARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PKSGK++ILQ IA +I +N+ E+ +IV+LIDERPEEVTEMQRSV
Sbjct: 164 LAAPIGKGQRGLVVAPPKSGKTMILQSIAQSIASNYPESDLIVLLIDERPEEVTEMQRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV P+SGK
Sbjct: 224 RGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVSPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGNMEV
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMEV 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LER+LA++R+YPAIN+ +SGTRREELL ++ LQK+W+LRK+L +
Sbjct: 344 LLERKLADRRIYPAINVTRSGTRREELLTNEEDLQKLWILRKILAPM 390
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++ILQ IA +I +N+ E+ +IV+LIDERPEEVTEMQRSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTMILQSIAQSIASNYPESDLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVSPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 80/111 (72%)
Query: 387 IDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDD 446
+ + + + R RKQEL+FA+ K K G+ ++ G LE+LPDGFGFLRS +Y+A DD
Sbjct: 19 LSMNLEGLARNRKQELIFALVKAHAKQGDDVYTTGVLELLPDGFGFLRSPEDSYVAGPDD 78
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKS 497
IY+SPSQIRRF+L TG KG+IR PK+ ERYFAL+K+ ++N P++ ++
Sbjct: 79 IYVSPSQIRRFHLRTGDTIKGKIRPPKDSERYFALVKVDEINYEKPENSRN 129
>gi|226954294|ref|ZP_03824758.1| transcription termination factor Rho [Acinetobacter sp. ATCC 27244]
gi|226834965|gb|EEH67348.1| transcription termination factor Rho [Acinetobacter sp. ATCC 27244]
Length = 422
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/345 (70%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ +D L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMDEDNLRKVWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|352106663|ref|ZP_08961606.1| transcription termination factor Rho [Halomonas sp. HAL1]
gi|350597706|gb|EHA13834.1| transcription termination factor Rho [Halomonas sp. HAL1]
Length = 419
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/369 (67%), Positives = 310/369 (84%), Gaps = 2/369 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL GD + G+IR
Sbjct: 44 KSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYISPSQIRRFNLRKGDSISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ ++N ++PE +K++ LF+NLTPL P + +E S E++T RIID
Sbjct: 104 PKEGERYFALLKVSQINFDRPENAKHKILFENLTPLFPDDRMRMEIGNGSTEDLTARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGLLV+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+V
Sbjct: 164 LTAPIGKGQRGLLVSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEA 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R+LAE+RV+PAIN+ +SGTRRE+LL ++++Q++W+LRKLL + T+ T F I
Sbjct: 344 HLDRKLAERRVFPAINIRRSGTRREDLLASEEEMQRMWILRKLLNPMEDTAATE--FLID 401
Query: 363 RTIPVEKNL 371
R + NL
Sbjct: 402 RLKDTKTNL 410
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P +L + ++ ++++ R RKQ+++FAI KK K GE I+GDG LE+L DGFG
Sbjct: 6 LKQKTVPELLDIAR--EMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL G G+IR PK GERYFALLK+ ++N
Sbjct: 64 FLRSADSSYLAGPDDIYISPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQINFDR 123
Query: 492 PKSGKSIIL 500
P++ K IL
Sbjct: 124 PENAKHKIL 132
>gi|406036846|ref|ZP_11044210.1| transcription termination factor Rho [Acinetobacter parvus DSM
16617 = CIP 108168]
Length = 422
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/345 (70%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ +D L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMDEDNLRKVWILRKLLHPM 390
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|374293379|ref|YP_005040414.1| transcription termination factor Rho [Azospirillum lipoferum 4B]
gi|357425318|emb|CBS88205.1| Transcription termination factor Rho [Azospirillum lipoferum 4B]
Length = 418
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/346 (68%), Positives = 302/346 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFGDG LEVL DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR PK+GE
Sbjct: 49 IFGDGVLEVLQDGFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + P+ ++R FDNLTPL+P++ + +E +K+N+TGRI+DL+AP+
Sbjct: 109 RYFALLKVNTINFDAPDKVRHRINFDNLTPLYPEERIRMEVEDPTKKNLTGRIVDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH++ TNH EA +IV+LIDERPEEVT+M RSVRGEVI
Sbjct: 169 GKGQRGLIVAPPRTGKTVMLQNIAHSVATNHPEAYLIVLLIDERPEEVTDMARSVRGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARN+EEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
L++KR +PAI+++KSGTR+EELL+ + K+W+LR++L + +T
Sbjct: 349 LSDKRTFPAIDISKSGTRKEELLVDKGTMSKMWILRRILMPMGVTD 394
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH++ TNH EA +IV+LIDERPEEVT+M RSVRGEVI+STFDEPA
Sbjct: 177 VAPPRTGKTVMLQNIAHSVATNHPEAYLIVLLIDERPEEVTDMARSVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 77/105 (73%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L++ + LRKQ++MFAI K+ + IFGDG LEVL DGFGFLRS +NY+ DDI
Sbjct: 20 ELQIENASTLRKQDMMFAILKQLAENDIPIFGDGVLEVLQDGFGFLRSPEANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
Y+SPSQ+RRF L TG +G+IR PK+GERYFALLK+ +N +P
Sbjct: 80 YVSPSQVRRFGLRTGDTVEGQIRSPKDGERYFALLKVNTINFDAP 124
>gi|262374863|ref|ZP_06068097.1| transcription termination factor Rho [Acinetobacter lwoffii SH145]
gi|262309876|gb|EEY91005.1| transcription termination factor Rho [Acinetobacter lwoffii SH145]
gi|407009173|gb|EKE24365.1| hypothetical protein ACD_6C00141G0002 [uncultured bacterium]
Length = 422
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/344 (70%), Positives = 298/344 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R+IDL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ IA +I N+ E I+IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQSIAQSIVRNNPEVILIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MD+VIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDEVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348
+RR+AEKRV+PA+N+ KSGTRREE L+ +D L+K+W+LRKLL++
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMSEDNLRKVWILRKLLHT 389
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ IA +I N+ E I+IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQSIAQSIVRNNPEVILIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 78/105 (74%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIR
Sbjct: 28 RNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 88 RFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|389709958|ref|ZP_10186874.1| transcription termination factor Rho [Acinetobacter sp. HA]
gi|388610136|gb|EIM39268.1| transcription termination factor Rho [Acinetobacter sp. HA]
Length = 422
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/344 (70%), Positives = 298/344 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPECFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVIASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVIASTFDESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MD+VIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDEVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348
+RR+AEKRV+PA+N+ KSGTRREE L+ +D L+K+W+LRKLL++
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMSEDNLRKVWILRKLLHT 389
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEVIASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPECFLIVLLIDERPEEVTEMERTVRGEVIASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|288959731|ref|YP_003450072.1| transcription termination factor Rho [Azospirillum sp. B510]
gi|288912039|dbj|BAI73528.1| transcription termination factor Rho [Azospirillum sp. B510]
Length = 478
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/345 (68%), Positives = 302/345 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFGDG LEVL DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR PK+GE
Sbjct: 109 IFGDGVLEVLQDGFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKDGE 168
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + P+ ++R FDNLTPL+P++ + +E +K+N+TGRI+DL++P+
Sbjct: 169 RYFALLKVNTINFDAPDKVRHRINFDNLTPLYPEERIRMEVEDPTKKNLTGRIVDLVSPL 228
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+I TNH EA +IV+LIDERPEEVT+M RSVRGEVI
Sbjct: 229 GKGQRGLIVAPPRTGKTVMLQNIAHSIATNHPEAYLIVLLIDERPEEVTDMARSVRGEVI 288
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 289 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 348
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARN+EEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 349 VDANALQRPKRFFGAARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 408
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
L++KR +PAI+++KSGTR+EELL+ + K+W+LR++L + +T
Sbjct: 409 LSDKRTFPAIDISKSGTRKEELLVDKGTMSKMWILRRILMPMGVT 453
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+I TNH EA +IV+LIDERPEEVT+M RSVRGEVI+STFDEPA
Sbjct: 237 VAPPRTGKTVMLQNIAHSIATNHPEAYLIVLLIDERPEEVTDMARSVRGEVISSTFDEPA 296
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 297 TRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 356
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 357 PKRFFGAAR 365
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 77/105 (73%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L++ + LRKQ++MFAI K+ + IFGDG LEVL DGFGFLRS +NY+ DDI
Sbjct: 80 ELQIENASTLRKQDMMFAILKQLAENDIPIFGDGVLEVLQDGFGFLRSPEANYLPGPDDI 139
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
Y+SPSQ+RRF L TG +G+IR PK+GERYFALLK+ +N +P
Sbjct: 140 YVSPSQVRRFGLRTGDTVEGQIRSPKDGERYFALLKVNTINFDAP 184
>gi|94499750|ref|ZP_01306286.1| transcription termination factor Rho [Bermanella marisrubri]
gi|94427951|gb|EAT12925.1| transcription termination factor Rho [Oceanobacter sp. RED65]
Length = 418
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/348 (68%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFN+ GDF+ G+IR
Sbjct: 43 AKSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNMRKGDFIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLK+ +VNGE PE SKN+ LF+NLTPL P + +LE+ S E+I+ RII
Sbjct: 103 PPKDSERYFALLKVNEVNGEAPEKSKNKILFENLTPLFPTERYILEQGNGSTEDISSRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DLIAPIGKGQRGL+VA PK+GK+++LQ IA +I N+ E+ +IV+LIDERPEEVTEM R+
Sbjct: 163 DLIAPIGKGQRGLIVAPPKAGKTMLLQTIAGSIARNNPESHLIVLLIDERPEEVTEMARN 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKR+VE K+DV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVAEMVIEKAKRMVEHKQDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL++PKRFFGAARN+EEGGSL+IIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDAHALEKPKRFFGAARNVEEGGSLSIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL+R+ +EKR+YPAIN+ +SGTRRE+ ++ + +LQ++W+LRK++ +
Sbjct: 343 LHLDRKASEKRIYPAINIRRSGTRREDQMMPEGELQRLWILRKIIAEM 390
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ IA +I N+ E+ +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTMLLQTIAGSIARNNPESHLIVLLIDERPEEVTEMARNVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRMVEHKQDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK + +L +++ +E +V R RKQ+L+F+I K+ K GE I+GDG LE+L DGFG
Sbjct: 6 LKKKSVAQLLEIAESMGME--NVSRARKQDLIFSILKRHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFN+ G G+IR PK+ ERYFALLK+ +VN +
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNMRKGDFIAGKIRPPKDSERYFALLKVNEVNGEA 123
Query: 492 PKSGKSIIL 500
P+ K+ IL
Sbjct: 124 PEKSKNKIL 132
>gi|262369829|ref|ZP_06063156.1| transcription termination factor Rho [Acinetobacter johnsonii
SH046]
gi|381197147|ref|ZP_09904488.1| transcription termination factor Rho [Acinetobacter lwoffii
WJ10621]
gi|262314868|gb|EEY95908.1| transcription termination factor Rho [Acinetobacter johnsonii
SH046]
Length = 422
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/344 (70%), Positives = 298/344 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPECFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVIASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 226 EVIASTFDESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MD+VIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDEVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348
+RR+AEKRV+PA+N+ KSGTRREE L+ +D L+K+W+LRKLL++
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMSEDNLRKVWILRKLLHT 389
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEVIASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPECFLIVLLIDERPEEVTEMERTVRGEVIASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTV+P+SGKVLTGGVD++
Sbjct: 233 DESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|50086051|ref|YP_047561.1| transcription termination factor Rho [Acinetobacter sp. ADP1]
gi|49532027|emb|CAG69739.1| transcription termination factor [Acinetobacter sp. ADP1]
Length = 422
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/345 (70%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DLI
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ +D L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMDEDNLRKVWILRKLLHPM 390
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 78/105 (74%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIR
Sbjct: 28 RNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 88 RFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|165924246|ref|ZP_02220078.1| transcription termination factor Rho, partial [Coxiella burnetii
Q321]
gi|165916310|gb|EDR34914.1| transcription termination factor Rho, partial [Coxiella burnetii
Q321]
Length = 364
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/321 (76%), Positives = 285/321 (88%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 44 KKGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK ERYFALL++ ++N EKPE SK + LF+NLTPL P + + +E S E+IT RIID
Sbjct: 104 PKESERYFALLQVNEINLEKPEASKGKILFENLTPLFPNEQIRMETGNGSTEDITARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQRGL+V+ PK+GK+++LQ+IAH+ITTNH E ++IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRGLIVSPPKAGKTMMLQNIAHSITTNHPECVLIVLLIDERPEEVTEMDRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIPASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL+ETGS+MDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSG 323
HL+RR+AEKR +PAIN+N+SG
Sbjct: 344 HLDRRIAEKRTFPAININRSG 364
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 162/302 (53%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++ Q ++LE V R RKQ+++FA+ K K GE IFGDG LE+L DGFG
Sbjct: 6 LKQKSVPELMQIAQEMNLEY--VSRTRKQDIIFAVLKAHAKKGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDI------------------------------YLSPSQIRRFNLHT 461
FLRS S+Y+A DDI Y + Q+ NL
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRPPKESERYFALLQVNEINLEK 123
Query: 462 GILWKGEIRVPK---------------NGERYFALLKI-----------KKVNVASPKSG 495
KG+I NG +I + + V+ PK+G
Sbjct: 124 PEASKGKILFENLTPLFPNEQIRMETGNGSTEDITARIIDLISPIGKGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IAH+ITTNH E ++IV+LIDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 184 KTMMLQNIAHSITTNHPECVLIVLLIDERPEEVTEMDRSVKGEVVASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIPASGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|359843296|gb|AEV89783.1| transcription termination factor Rho [Pseudoalteromonas sp. D41]
Length = 419
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/349 (69%), Positives = 302/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+G G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G IR
Sbjct: 43 AKSGENIYGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ +VN +KPE S+ + LF+NLTPLH + L +ER S E+IT R++
Sbjct: 103 PPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERLRMERGNGSTEDITARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQR L+VA PK+GK+++LQ+IA +I+ N + ++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGKGQRALIVAPPKAGKTMLLQNIAQSISYNQPDCELMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE +KDV+ILLDSITRLARAYNTVIP+SG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHRKDVVILLDSITRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL +PKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+HL R++AE+RV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LHLNRKIAERRVFPAIDFNRSGTRREELLTKPDELQKMWILRKIVHDMS 391
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I+ N + ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSISYNQPDCELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL +
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHRKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + ++ +++ LE +V RLRKQ+++FAI K K GE I+G G LE+L DGFG
Sbjct: 6 LKDKSIKELVNLAESMGLE--NVARLRKQDIIFAILKAHAKSGENIYGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y+A DDIY+SPSQIRRF++ TG G IR PK+GERYFALLK+ +VN
Sbjct: 64 FLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENSRTKIL 132
>gi|157377243|ref|YP_001475843.1| transcription termination factor Rho [Shewanella sediminis HAW-EB3]
gi|157319617|gb|ABV38715.1| transcription termination factor Rho [Shewanella sediminis HAW-EB3]
Length = 421
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/344 (70%), Positives = 298/344 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFSMRTGDSIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+ + LF+NLTPLH ++ + +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVSEVNFDKPENSRTKILFENLTPLHAEERMRMERGNGSTEDITSRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ++A +IT N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNMAQSITYNNPDVVLMVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTPDELQKMWILRKIL 387
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 156/302 (51%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL----- 426
LKD + ++ Q +++V + R RKQ+++F+I K K GE IFG G LE+L
Sbjct: 6 LKDTSISDLVLLAQ--EMKVENTARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 427 ------------PDGFGFLRSQGSNY-MASSDDIY---LSPSQIRRF------------- 457
PD SQ + M + D I+ P + R+
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFSMRTGDSIFGKIRPPKEGERYFALLKVSEVNFDK 123
Query: 458 --NLHTGILWKG--------EIRVPK-NGERYFALLKI-----------KKVNVASPKSG 495
N T IL++ +R+ + NG +I + + VA PK+G
Sbjct: 124 PENSRTKILFENLTPLHAEERMRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ++A +IT N+ + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 184 KTLLLQNMAQSITYNNPDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|170724878|ref|YP_001758904.1| transcription termination factor Rho [Shewanella woodyi ATCC 51908]
gi|169810225|gb|ACA84809.1| transcription termination factor Rho [Shewanella woodyi ATCC 51908]
Length = 421
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/344 (70%), Positives = 299/344 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF++ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFSMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+++ LF+NLTPLH ++ + +ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVSEVNFDKPENSRSKILFENLTPLHAEERIRMERGNGSTEDITSRILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ++A +IT N+ + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNMAQSITYNNPDVVLMVLLIDERPEEVTEMQRMV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTTPDELQKMWILRKIL 387
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/286 (37%), Positives = 146/286 (51%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSLEVLPDGF 430
+++V + R RKQ+++F+I K K GE IFG D S PD
Sbjct: 20 EMKVENTARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFGFLRSADASYLAGPDDI 79
Query: 431 GFLRSQGSNY-MASSDDIY---LSPSQIRRF---------------NLHTGILWKG---- 467
SQ + M + D I+ P + R+ N + IL++
Sbjct: 80 YVSPSQIRRFSMRTGDTIFGKIRPPKEGERYFALLKVSEVNFDKPENSRSKILFENLTPL 139
Query: 468 ----EIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNH 511
IR+ + NG +I + + VA PK+GK+++LQ++A +IT N+
Sbjct: 140 HAEERIRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPPKAGKTLLLQNMAQSITYNN 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
+ +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 200 PDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAAR 305
>gi|425744201|ref|ZP_18862261.1| transcription termination factor Rho [Acinetobacter baumannii
WC-323]
gi|425491589|gb|EKU57870.1| transcription termination factor Rho [Acinetobacter baumannii
WC-323]
Length = 422
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/345 (69%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLIMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ ++ L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMSEENLRKVWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|335042317|ref|ZP_08535344.1| transcription termination factor [Methylophaga aminisulfidivorans
MP]
gi|333788931|gb|EGL54813.1| transcription termination factor [Methylophaga aminisulfidivorans
MP]
Length = 419
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/348 (69%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE + G LE+LPDGFGFLRS +Y+A DD+Y+SPSQIRRF+L TGD ++G+IR
Sbjct: 43 SKQGEDVITTGVLELLPDGFGFLRSPEDSYVAGPDDVYVSPSQIRRFHLRTGDTIKGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFAL+K++++N EKP+ S+N+ F+NLTPL P + LER S E++T R+I
Sbjct: 103 PPKDSERYFALVKVEEINYEKPDKSRNKVPFENLTPLFPNERFTLERGNGSTEDLTARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +P+GKGQRGL+VA PKSGK++I+Q IA +I +N+ ++ +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLASPLGKGQRGLIVAPPKSGKTMIMQSIAQSIASNYPDSDLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV++STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV P+SG
Sbjct: 223 VRGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVAPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGNME
Sbjct: 283 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
V LER+LA++R+YPAIN+ +SGTRREELL ++ LQK+W+LRK++ +
Sbjct: 343 VLLERKLADRRMYPAINVTRSGTRREELLTTEEDLQKLWILRKIIAQM 390
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++I+Q IA +I +N+ ++ +IV+LIDERPEEVTEMQRSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTMIMQSIAQSIASNYPDSDLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVAPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 79/111 (71%)
Query: 387 IDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDD 446
+ + + + R RKQEL+FAI K +K GE + G LE+LPDGFGFLRS +Y+A DD
Sbjct: 19 LSMNLEGLARNRKQELIFAIVKAHSKQGEDVITTGVLELLPDGFGFLRSPEDSYVAGPDD 78
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKS 497
+Y+SPSQIRRF+L TG KG+IR PK+ ERYFAL+K++++N P ++
Sbjct: 79 VYVSPSQIRRFHLRTGDTIKGKIRPPKDSERYFALVKVEEINYEKPDKSRN 129
>gi|384082968|ref|ZP_09994143.1| transcription termination factor Rho [gamma proteobacterium HIMB30]
Length = 419
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/347 (69%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL GD + G+IR
Sbjct: 44 KSGEDIYGDGVLEILSDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLK+ ++N +KPE +KN+ LF+NLTPL P+K L +E+ S E++T RIID
Sbjct: 104 PKDSERYFALLKVDEINFDKPENAKNKILFENLTPLFPQKRLTMEQGNGSTEDLTARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+ PIGKGQR L+V+ PK+GK+++LQ+IA++I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LVCPIGKGQRALIVSPPKAGKTLMLQNIANSIVRNNPECYLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRL E K+DVIILLDSITRLARAYNTV P+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLTEHKRDVIILLDSITRLARAYNTVQPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATAL++TGS+MD+VI+EEFKGTGN E+
Sbjct: 284 VLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALVDTGSKMDEVIFEEFKGTGNSEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+LERR AEKR++PAIN+ KSGTRRE+LL +++LQ++W+LRKLL S+
Sbjct: 344 NLERRAAEKRIFPAINIRKSGTRREDLLTTEEELQRMWILRKLLDSM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA++I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIANSIVRNNPECYLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD++AL+R
Sbjct: 237 ARHVQVAEMVIEKAKRLTEHKRDVIILLDSITRLARAYNTVQPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK MP +L ++++LE ++ R RKQ+++F+I K K GE I+GDG LE+L DGFG
Sbjct: 6 LKKKSMPQLLEIAESMNLE--NLARSRKQDVIFSILKAHAKSGEDIYGDGVLEILSDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL G G+IR PK+ ERYFALLK+ ++N
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSIAGKIRPPKDSERYFALLKVDEINFDK 123
Query: 492 PKSGKSIIL 500
P++ K+ IL
Sbjct: 124 PENAKNKIL 132
>gi|39998198|ref|NP_954149.1| transcription termination factor Rho [Geobacter sulfurreducens PCA]
gi|39985144|gb|AAR36499.1| transcription termination factor Rho [Geobacter sulfurreducens PCA]
Length = 415
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/344 (68%), Positives = 302/344 (87%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNLHTGD V G+IR PK GE
Sbjct: 49 IFGEGVLECLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PE+++++ LFDNLTPL+P + L LE + +N++ R+++L++PI
Sbjct: 109 RYFALLKVETVNFEPPEVARDKILFDNLTPLYPDEKLKLET---APDNMSMRVMELVSPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVKGEVV 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P SGK+LTGG
Sbjct: 226 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPSGKILTGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQ+PKRFFGAARNIEEGGSLTIIA+AL++TGS+MD+VI+EEFKGTGNMEVHL+R+
Sbjct: 286 VDANALQKPKRFFGAARNIEEGGSLTIIASALVDTGSKMDEVIFEEFKGTGNMEVHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELL++ L +IW+LRK+L+ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLVEKSALNRIWILRKVLHPMNV 389
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 164/282 (58%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQ+L+FAI +T+ IFG+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNLHTG G+IR PK GERYFALLK++ VN
Sbjct: 81 VSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVNFEPPEVARDKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q+IA++I NH E
Sbjct: 141 PDEKLKLETAPDNMSMRVMELVSPIGKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVY 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NALQ+PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGAAR 302
>gi|238755775|ref|ZP_04617107.1| Transcription termination factor rho [Yersinia ruckeri ATCC 29473]
gi|238706002|gb|EEP98387.1| Transcription termination factor rho [Yersinia ruckeri ATCC 29473]
Length = 419
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/348 (70%), Positives = 303/348 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLARKIAEKRVFPAIDYNRSGTRKEELLTTTEELQKMWILRKIIHPM 390
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ RLRKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|430375685|ref|ZP_19430088.1| transcription termination factor Rho [Moraxella macacae 0408225]
gi|429540916|gb|ELA08944.1| transcription termination factor Rho [Moraxella macacae 0408225]
Length = 421
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/345 (70%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+LPDGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEAIFGDGVLEILPDGFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLKTGDTIAGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ S+++ +F+NLTPL P K L LE + E++TGRIIDLI
Sbjct: 106 DSERYFALLKVNEINFDTPDRSRHKLIFENLTPLFPTKQLKLELGNGTTEDLTGRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ IA +IT N+ E +IV+LIDERPEEVTEMQR+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTVLLQSIAQSITRNNPECHLIVLLIDERPEEVTEMQRTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 226 EVVASTFDEPPARHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NAL+RPKRFFGAARN+EEGGSLTII+TALI+TGS+MD VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALERPKRFFGAARNVEEGGSLTIISTALIDTGSKMDSVIFEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
ER +AEKRV+PAIN+ KSGTRREE LI + L+K+W+LRKLL+ +
Sbjct: 346 EREIAEKRVFPAINIKKSGTRREERLIDEALLRKVWILRKLLHPM 390
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 135/290 (46%), Positives = 167/290 (57%), Gaps = 85/290 (29%)
Query: 384 TQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMAS 443
++++ LE ++ R RKQ+++FAI K + GE IFGDG LE+LPDGFGFLRS +Y+A
Sbjct: 18 SESVGLE--NMARNRKQDIIFAILKTHARNGEAIFGDGVLEILPDGFGFLRSAEGSYLAG 75
Query: 444 SDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP----------- 492
DDIY+SPSQIRRFNL TG G IR PK+ ERYFALLK+ ++N +P
Sbjct: 76 PDDIYVSPSQIRRFNLKTGDTIAGTIRPPKDSERYFALLKVNEINFDTPDRSRHKLIFEN 135
Query: 493 ----------------------------------KSGKSII-----------LQHIAHAI 507
K +SII LQ IA +I
Sbjct: 136 LTPLFPTKQLKLELGNGTTEDLTGRIIDLIAPIGKGQRSIIVAPPKAGKTVLLQSIAQSI 195
Query: 508 TTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------- 548
T N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 196 TRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPARHVQVAEMVIEKAKRLVE 255
Query: 549 --------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL+RPKRFFGAAR
Sbjct: 256 HKQDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALERPKRFFGAAR 305
>gi|322515172|ref|ZP_08068172.1| transcription termination factor rho [Actinobacillus ureae ATCC
25976]
gi|407691847|ref|YP_006816636.1| transcription termination factor Rho [Actinobacillus suis H91-0380]
gi|322118825|gb|EFX91023.1| transcription termination factor rho [Actinobacillus ureae ATCC
25976]
gi|407387904|gb|AFU18397.1| transcription termination factor Rho [Actinobacillus suis H91-0380]
Length = 420
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/345 (70%), Positives = 297/345 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGQGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLKMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEMQR+
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRT 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV P SG
Sbjct: 224 VRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPVSG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI N+SGTR+++LL+ ++ + W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIEFNRSGTRKDDLLMSPEEHRNAWMLRKVL 388
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 171/293 (58%), Gaps = 83/293 (28%)
Query: 381 LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNY 440
L E + + ++ RLRKQ+++FAI K+ K GE IFG G LE+LPDGFGFLRS S+Y
Sbjct: 14 LVEMGENQMGLENLARLRKQDIIFAILKQHAKSGEDIFGQGVLEILPDGFGFLRSADSSY 73
Query: 441 MASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL------------------- 481
+A DDIY+SPSQIRRFNL TG +G+IR PK GERYFAL
Sbjct: 74 LAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLVNDDKPEVSRSKIL 133
Query: 482 ------------LKIKKVN-------------------------VASPKSGKSIILQHIA 504
LK+++ N VA PK+GK+++LQ+IA
Sbjct: 134 FENLTPLHANSRLKMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTVLLQNIA 193
Query: 505 HAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------- 548
+IT N+ E +IV+LIDERPEEVTEMQR+VRGEVIASTFDEPA
Sbjct: 194 QSITHNYPECELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKR 253
Query: 549 -----------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 254 SVEHKKDVVILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKRFFGAAR 306
>gi|83643188|ref|YP_431623.1| transcription termination factor Rho [Hahella chejuensis KCTC 2396]
gi|83631231|gb|ABC27198.1| transcription termination factor Rho [Hahella chejuensis KCTC 2396]
Length = 420
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 311/348 (89%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFALLK+ ++N +KPE ++N+ LF+NLTPL P++ L LE S E+++ RI+
Sbjct: 103 PPKDGERYFALLKVNEINFDKPENARNKILFENLTPLFPQERLRLEAGNGSTEDLSARIL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGL+V+ PK+GK++++Q+IA +IT N+ E ++V+LIDERPEEVTEMQR+
Sbjct: 163 DLVAPIGKGQRGLIVSPPKAGKTLLMQNIAQSITRNNPETHLMVLLIDERPEEVTEMQRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNT+IP+SG
Sbjct: 223 VRGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTIIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD++AL+RPKRFFGAARN+EEGGSLTI+ATALI+TGS+MD+VIYEEFKGTGN+E
Sbjct: 283 KVLTGGVDAHALERPKRFFGAARNVEEGGSLTIVATALIDTGSKMDEVIYEEFKGTGNLE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
VHL+RR++EKRV+PAIN+ +SGTRREELL+ +++LQ++W+LRKLL+S+
Sbjct: 343 VHLDRRISEKRVFPAINIRRSGTRREELLMSEEELQRVWILRKLLHSM 390
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q+IA +IT N+ E ++V+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLLMQNIAQSITRNNPETHLMVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNT+IP+SGKVLTGGVD++AL+R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTIIPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P +L + + LE ++ R RKQ+++F+I KK K GE I+GDG LE+L DGFG
Sbjct: 6 LKKKPVPELLTIAEEMGLE--NMARSRKQDVIFSILKKHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEINFDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENARNKIL 132
>gi|78484471|ref|YP_390396.1| transcription termination factor Rho [Thiomicrospira crunogena
XCL-2]
gi|78362757|gb|ABB40722.1| transcription termination factor Rho [Thiomicrospira crunogena
XCL-2]
Length = 419
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/347 (69%), Positives = 295/347 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+G+G LE+LPDGFGFLRS +Y+A DD+Y+SPSQIRRF L GD ++G+IR
Sbjct: 44 KSGEDIYGEGVLEILPDGFGFLRSGDGSYLAGPDDLYVSPSQIRRFGLRKGDTIQGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLK++++N E P++++ + F+NLTPLH ++ L +E S E+IT RIID
Sbjct: 104 PKDSERYFALLKVERINFEDPDVARKKIAFENLTPLHAQERLKMESGNGSTEDITTRIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
+ AP GKGQRGL+VA PKSGK++ILQ IA +I NH EA +IV+LIDERPEEVTEMQR+V
Sbjct: 164 IAAPFGKGQRGLIVAPPKSGKTVILQQIAQSIAENHPEAYLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVI+STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 224 KGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R +AEKR +PAIN+ KSGTR+EELL D+LQ IW+LR+ L L
Sbjct: 344 HLSRSIAEKRTFPAINIEKSGTRKEELLTTPDELQNIWILRRFLQGL 390
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 139/283 (49%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFG-----------------DGSLEVLPDG---- 429
+ ++ RL+KQ+++FAI K K GE I+G DGS PD
Sbjct: 23 LENLARLKKQDIIFAILKAHAKSGEDIYGEGVLEILPDGFGFLRSGDGSYLAGPDDLYVS 82
Query: 430 ------FGFLRS---QGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPK------- 473
FG + QG + Y + ++ R N + + +I
Sbjct: 83 PSQIRRFGLRKGDTIQGKIRPPKDSERYFALLKVERINFEDPDVARKKIAFENLTPLHAQ 142
Query: 474 --------NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSEA 514
NG +I + + VA PKSGK++ILQ IA +I NH EA
Sbjct: 143 ERLKMESGNGSTEDITTRIIDIAAPFGKGQRGLIVAPPKSGKTVILQQIAQSIAENHPEA 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQR+V+GEVI+STFDEPA
Sbjct: 203 YLIVLLIDERPEEVTEMQRTVKGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKTDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTVVPSSGKILTGGVDANALHRPKRFFGAAR 305
>gi|213423863|ref|ZP_03356843.1| transcription termination factor Rho [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 382
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/336 (72%), Positives = 293/336 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQK 338
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENARNKIL 132
>gi|409913553|ref|YP_006892018.1| transcription termination factor Rho [Geobacter sulfurreducens
KN400]
gi|298507136|gb|ADI85859.1| transcription termination factor Rho [Geobacter sulfurreducens
KN400]
Length = 415
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/344 (68%), Positives = 302/344 (87%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNLHTGD V G+IR PK GE
Sbjct: 49 IFGEGVLECLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PE+++++ LFDNLTPL+P + L LE + +N++ R+++L++PI
Sbjct: 109 RYFALLKVETVNFEPPEVARDKILFDNLTPLYPDEKLKLET---APDNMSMRVMELVSPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVKGEVV 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P SGK+LTGG
Sbjct: 226 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPSGKILTGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQ+PKRFFGAARNIEEGGSLTIIA+AL++TGS+MD+VI+EEFKGTGNMEVHL+R+
Sbjct: 286 VDANALQKPKRFFGAARNIEEGGSLTIIASALVDTGSKMDEVIFEEFKGTGNMEVHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELL++ L +IW+LRK+L+ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLVEKSALNRIWILRKVLHPMNV 389
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 164/282 (58%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQ+L+FAI +T+ IFG+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNLHTG G+IR PK GERYFALLK++ VN
Sbjct: 81 VSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVNFEPPEVARDKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q+IA++I NH E
Sbjct: 141 PDEKLKLETAPDNMSMRVMELVSPIGKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVY 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NALQ+PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGAAR 302
>gi|404494366|ref|YP_006718472.1| transcription termination factor Rho [Pelobacter carbinolicus DSM
2380]
gi|77546369|gb|ABA89931.1| transcription termination factor Rho [Pelobacter carbinolicus DSM
2380]
Length = 415
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/344 (68%), Positives = 302/344 (87%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE+LPDGFGFLR+ +NY+ DDIY+SPSQIRRFNL TGD V G+IR PK GE
Sbjct: 49 IFGEGVLEILPDGFGFLRAPDANYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +VN E P +++++TLFDNLTPL+P++ ++LE + +N++ R++DL+ PI
Sbjct: 109 RYFALLKVAEVNFENPSVARDKTLFDNLTPLYPEERIVLE---AAPDNLSMRVMDLVTPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+I+LQ+IA++I NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTILLQNIANSIAVNHPEVYLIVLLIDERPEEVTDMQRSVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKA+RLVE K+DV+ILLDSITRLARAYNTV+P SGK+L+GG
Sbjct: 226 SSTFDEPATRHVQVAEMVIEKARRLVEHKRDVVILLDSITRLARAYNTVVPPSGKILSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME L+RR
Sbjct: 286 VDSNALHKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAVLDRR 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L +KR +PAI++NKSGTRREELL+ +LQ++W+LRK+L S+ +
Sbjct: 346 LVDKRTFPAIDVNKSGTRREELLVGQTQLQRLWLLRKVLSSMNV 389
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/283 (45%), Positives = 164/283 (57%), Gaps = 80/283 (28%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL+++ +RKQ+L+F I + IFG+G LE+LPDGFGFLR+ +NY+ DDI
Sbjct: 20 DLKLDGAAGMRKQDLIFTILNATAEKNGAIFGEGVLEILPDGFGFLRAPDANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------- 488
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 80 YVSPSQIRRFNLRTGDTVSGQIRPPKEGERYFALLKVAEVNFENPSVARDKTLFDNLTPL 139
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK+I+LQ+IA++I NH E
Sbjct: 140 YPEERIVLEAAPDNLSMRVMDLVTPIGKGQRGLIVAPPRTGKTILLQNIANSIAVNHPEV 199
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 YLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPATRHVQVAEMVIEKARRLVEHKRDVVI 259
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 260 LLDSITRLARAYNTVVPPSGKILSGGVDSNALHKPKRFFGAAR 302
>gi|333909376|ref|YP_004482962.1| transcription termination factor Rho [Marinomonas posidonica
IVIA-Po-181]
gi|333479382|gb|AEF56043.1| transcription termination factor Rho [Marinomonas posidonica
IVIA-Po-181]
Length = 421
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/361 (67%), Positives = 304/361 (84%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIYGDGILEILQDGFGFLRSPDCSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N +KP+ +N+ LF+NLTPL L++E S E++T RIID
Sbjct: 104 PKDGERYFALLKVNEINFDKPDSVRNKILFENLTPLFADDRLVMEAGNGSTEDVTSRIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+V+ PK+GK+ +LQ+IA++IT N+ E +IV+LIDERPEEVTEM R+V
Sbjct: 164 LVAPMGKGQRALVVSPPKAGKTFMLQNIANSITRNNPECHLIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL+RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGN E+
Sbjct: 284 VLTGGVDANALERPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNSEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R++AEKR +PAIN+ +SGTRRE+LL +D+LQ++W+LRKLL M + F I
Sbjct: 344 HLDRKIAEKRTFPAINIRRSGTRREDLLTSEDELQRMWILRKLLNP--MEDIAATEFLID 401
Query: 363 R 363
R
Sbjct: 402 R 402
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+ +LQ+IA++IT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTFMLQNIANSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD+NAL+R
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++F+I K+ K GE I+GDG LE+L DGFGFLRS +Y+A DDI
Sbjct: 20 EMGLDNMARSRKQDVIFSILKRHAKSGEDIYGDGILEILQDGFGFLRSPDCSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N P S ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEINFDKPDSVRNKIL 132
>gi|424864652|ref|ZP_18288555.1| transcription termination factor Rho [SAR86 cluster bacterium
SAR86B]
gi|400759398|gb|EJP73580.1| transcription termination factor Rho [SAR86 cluster bacterium
SAR86B]
Length = 425
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/346 (69%), Positives = 299/346 (86%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K G I+G G LE+L DGFGFLRS +Y A++DDIY+SPSQIR+F L GD V+G+I
Sbjct: 42 KASEGNDIYGGGVLEILNDGFGFLRSPQGSYCANTDDIYVSPSQIRKFGLRKGDTVQGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+K+ +NGE+P +KN+ LF+NLTPL P + +LLE+ S E+++ RI
Sbjct: 102 RTPKDQERYFALIKVDTINGEEPAQTKNKILFENLTPLFPNERMLLEQGSGSNEDLSSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGL+V+ PK+GK+++LQ IAH+IT+N+ E +IV+LIDERPEEVTEM R
Sbjct: 162 IDLIAPIGKGQRGLIVSPPKAGKTLMLQSIAHSITSNNPEVELIVLLIDERPEEVTEMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEP RHVQVA MV+EKAKRLVE KKDV+ILLDSITRL RAYN V PAS
Sbjct: 222 TVRGEVVASTFDEPPSRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNAVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVDSNAL+RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNM
Sbjct: 282 GKILSGGVDSNALERPKRFFGAARNLEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+HLER++AEKR++PAIN+ +SGTRRE+LL D++LQ++WVLRK+L
Sbjct: 342 EIHLERKIAEKRIFPAINIRRSGTRREDLLTSDEELQRMWVLRKIL 387
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ IAH+IT+N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQSIAHSITSNNPEVELIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN V PASGK+L+GGVDSNAL+R
Sbjct: 237 SRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNAVQPASGKILSGGVDSNALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 76/110 (69%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ V RL+KQ+++F IFK K G I+G G LE+L DGFGFLRS +Y A++DDIY+S
Sbjct: 23 IEDVGRLKKQDIIFKIFKHKASEGNDIYGGGVLEILNDGFGFLRSPQGSYCANTDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIR+F L G +G+IR PK+ ERYFAL+K+ +N P K+ IL
Sbjct: 83 PSQIRKFGLRKGDTVQGKIRTPKDQERYFALIKVDTINGEEPAQTKNKIL 132
>gi|358013192|ref|ZP_09145002.1| transcription termination factor Rho [Acinetobacter sp. P8-3-8]
Length = 422
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/345 (69%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E S E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLIMELGNGSSEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPECFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 226 EVVASTFDESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MD+VIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDEVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ ++ L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMSEENLRKVWILRKLLHPM 390
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPECFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTV+P+SGKVLTGGVD++
Sbjct: 233 DESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|148266076|ref|YP_001232782.1| transcription termination factor Rho [Geobacter uraniireducens Rf4]
gi|146399576|gb|ABQ28209.1| transcription termination factor Rho [Geobacter uraniireducens Rf4]
Length = 415
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 300/344 (87%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNLHTGD V G+IR PK GE
Sbjct: 49 IFGEGVLETLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E P++++++ LFDNLTPL+P++ L LE + +N+ R+++LIAPI
Sbjct: 109 RYFALLKVESVNHESPDVARDKILFDNLTPLYPEEKLKLET---TPDNMPMRVVELIAPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVFLIVLLIDERPEEVTDMQRSVNGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RH+QVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP SGK+L+GG
Sbjct: 226 SSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPPSGKILSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+HL+R+
Sbjct: 286 VDSNALHKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELLI+ L +IW+LRK+L+ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLIEKSALNRIWILRKVLHPMNV 389
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 162/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQ+L+FAI +T+ IFG+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLETLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNLHTG G+IR PK GERYFALLK++ VN
Sbjct: 81 VSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVESVNHESPDVARDKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q+IA++I NH E
Sbjct: 141 PEEKLKLETTPDNMPMRVVELIAPIGKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVF 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVNGEVISSTFDEPASRHIQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVIPPSGKILSGGVDSNALHKPKRFFGAAR 302
>gi|399518988|ref|ZP_10759796.1| Transcription termination factor rho [Pseudomonas pseudoalcaligenes
CECT 5344]
gi|399112812|emb|CCH36354.1| Transcription termination factor rho [Pseudomonas pseudoalcaligenes
CECT 5344]
Length = 419
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P K L +E S E+ITGR+ID
Sbjct: 104 PKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNKRLTMEAGNGSTEDITGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR++EKRV+PAIN+NKSGTRREELL +++L ++W+LRKLL+ +
Sbjct: 344 ILDRRVSEKRVFPAININKSGTRREELLTGEEELSRMWILRKLLHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>gi|262374321|ref|ZP_06067597.1| transcription termination factor Rho [Acinetobacter junii SH205]
gi|262310879|gb|EEY91967.1| transcription termination factor Rho [Acinetobacter junii SH205]
Length = 422
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/345 (69%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ ++ L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMGEENLRKVWILRKLLHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|71066544|ref|YP_265271.1| transcription termination factor Rho [Psychrobacter arcticus 273-4]
gi|93007117|ref|YP_581554.1| transcription termination factor Rho [Psychrobacter cryohalolentis
K5]
gi|71039529|gb|AAZ19837.1| transcription termination factor Rho [Psychrobacter arcticus 273-4]
gi|92394795|gb|ABE76070.1| transcription termination factor Rho [Psychrobacter cryohalolentis
K5]
Length = 435
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/359 (68%), Positives = 302/359 (84%), Gaps = 2/359 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+GDG LEVLPDGFGFLRS +Y+A DDIY+SPSQIRRF+L TGD + G IR PK
Sbjct: 59 GEAIYGDGVLEVLPDGFGFLRSSEGSYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPK 118
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ S+++ +F+NLTPL P + L LE + E++TGRIIDLI
Sbjct: 119 DSERYFALLKVGEINFDTPDRSRHKLIFENLTPLFPTEQLKLELGNGTTEDLTGRIIDLI 178
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ IA +IT N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 179 APIGKGQRSIIVAPPKAGKTMLLQSIAQSITRNNPECYLIVLLIDERPEEVTEMERTVRG 238
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 239 EVVASTFDEPPQRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVIPSSGKVL 298
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGG+D+NAL+RPKRFFGAARNIEEGGSLTIIA+ALI+TGS+MD VI+EEFKGTGN E+ L
Sbjct: 299 TGGLDANALERPKRFFGAARNIEEGGSLTIIASALIDTGSKMDSVIFEEFKGTGNQEITL 358
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKR 363
ER LAEKRV+PAIN+ KSGTRREE L+ +DKL+K+W+LRKLL M + F + R
Sbjct: 359 ERDLAEKRVFPAINIKKSGTRREERLLDEDKLRKVWILRKLLQP--MDGVQATEFLLDR 415
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 165/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FAI K + GE I+GDG LEVLPDGFGFLRS +Y+A DDI
Sbjct: 33 EMGLDNMARSRKQDIIFAILKTHARNGEAIYGDGVLEVLPDGFGFLRSSEGSYLAGPDDI 92
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP--------------- 492
Y+SPSQIRRF+L TG G IR PK+ ERYFALLK+ ++N +P
Sbjct: 93 YVSPSQIRRFSLKTGDSIAGTIRPPKDSERYFALLKVGEINFDTPDRSRHKLIFENLTPL 152
Query: 493 ------------------------------KSGKSII-----------LQHIAHAITTNH 511
K +SII LQ IA +IT N+
Sbjct: 153 FPTEQLKLELGNGTTEDLTGRIIDLIAPIGKGQRSIIVAPPKAGKTMLLQSIAQSITRNN 212
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEM+R+VRGEV+ASTFDEP
Sbjct: 213 PECYLIVLLIDERPEEVTEMERTVRGEVVASTFDEPPQRHVQVAEMVIEKAKRLVEHKQD 272
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGG+D+NAL+RPKRFFGAAR
Sbjct: 273 VVILLDSITRLARAYNTVIPSSGKVLTGGLDANALERPKRFFGAAR 318
>gi|403049964|ref|ZP_10904448.1| transcription termination factor Rho [Acinetobacter bereziniae LMG
1003]
gi|445420813|ref|ZP_21435635.1| transcription termination factor Rho [Acinetobacter sp. WC-743]
gi|444758380|gb|ELW82880.1| transcription termination factor Rho [Acinetobacter sp. WC-743]
Length = 422
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/345 (69%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E S E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGSTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPECFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 226 EVVASTFDESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MD+VIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDEVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ ++ L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMSEENLRKVWILRKLLHPM 390
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPECFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTV+P+SGKVLTGGVD++
Sbjct: 233 DESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 78/105 (74%)
Query: 396 RLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR 455
R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIR
Sbjct: 28 RNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIR 87
Query: 456 RFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
RFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 88 RFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|372269465|ref|ZP_09505513.1| transcription termination factor Rho [Marinobacterium stanieri S30]
Length = 419
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/353 (68%), Positives = 307/353 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+G+G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIYGNGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N ++PE +K++ LF+NLTPL ++ L +E S E++T R+ID
Sbjct: 104 PKDGERYFALLKVNEINYDRPENAKSKILFENLTPLFAQERLRMEIGNGSTEDLTARVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+ P+GKGQR L+V+ PK+GK+++LQ+IA++IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LVCPMGKGQRALIVSPPKAGKTLMLQNIANSITRNNPECYLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMVLEKAKRL E KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPSRHVQVAEMVLEKAKRLTEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL+RPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGN EV
Sbjct: 284 VLTGGVDAHALERPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNSEV 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFT 355
HL+R++AEKRV+PAIN+ +SGTRRE+LL +++LQ++W+LRKLL + T+ T
Sbjct: 344 HLDRKVAEKRVFPAINIRRSGTRREDLLTSEEELQRMWILRKLLDPMEDTAAT 396
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA++IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIANSITRNNPECYLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL+R
Sbjct: 237 SRHVQVAEMVLEKAKRLTEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 87/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FAI K+ K GE I+G+G LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EMGLDNMARSRKQDVIFAILKRHAKSGEDIYGNGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+GERYFALLK+ ++N P++ KS IL
Sbjct: 80 YVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEINYDRPENAKSKIL 132
>gi|359428013|ref|ZP_09219056.1| transcription termination factor Rho [Acinetobacter sp. NBRC
100985]
gi|402758513|ref|ZP_10860769.1| transcription termination factor Rho [Acinetobacter sp. NCTC 7422]
gi|358236675|dbj|GAB00595.1| transcription termination factor Rho [Acinetobacter sp. NBRC
100985]
Length = 422
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/345 (70%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DLI
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTSRVVDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQTIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ ++ L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMGEENLRKVWILRKLLHPM 390
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQTIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGGVD++
Sbjct: 233 DEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|404495233|ref|YP_006719339.1| transcription termination factor Rho [Geobacter metallireducens
GS-15]
gi|418065700|ref|ZP_12703071.1| transcription termination factor Rho [Geobacter metallireducens
RCH3]
gi|78192852|gb|ABB30619.1| transcription termination factor Rho [Geobacter metallireducens
GS-15]
gi|373561780|gb|EHP88006.1| transcription termination factor Rho [Geobacter metallireducens
RCH3]
Length = 415
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/344 (68%), Positives = 300/344 (87%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNLHTGD V G+IR PK GE
Sbjct: 49 IFGEGVLECLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PE+++++ LFDNLTPL+P + L LE + +N+ R+++L++PI
Sbjct: 109 RYFALLKVETVNFEPPEVARDKILFDNLTPLYPDEKLKLET---APDNMPMRVLELVSPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSVRGEV+
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVRGEVV 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P SGK+LTGG
Sbjct: 226 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPSGKILTGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQ+PKRFFGAARNIEEGGSLTIIA+AL++TGS+MD+VI+EEFKGTGNMEVHL+R+
Sbjct: 286 VDANALQKPKRFFGAARNIEEGGSLTIIASALVDTGSKMDEVIFEEFKGTGNMEVHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELL++ L + W+LRK+L+ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLVEKGSLNRTWILRKVLHPMNV 389
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 164/282 (58%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQ+L+FAI +T+ IFG+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNLHTG G+IR PK GERYFALLK++ VN
Sbjct: 81 VSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVNFEPPEVARDKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q+IA++I NH E
Sbjct: 141 PDEKLKLETAPDNMPMRVLELVSPIGKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVY 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NALQ+PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGAAR 302
>gi|255320838|ref|ZP_05362012.1| transcription termination factor Rho [Acinetobacter radioresistens
SK82]
gi|262380269|ref|ZP_06073424.1| transcription termination factor Rho [Acinetobacter radioresistens
SH164]
gi|421464512|ref|ZP_15913202.1| transcription termination factor Rho [Acinetobacter radioresistens
WC-A-157]
gi|421854928|ref|ZP_16287311.1| transcription termination factor Rho [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|255302007|gb|EET81250.1| transcription termination factor Rho [Acinetobacter radioresistens
SK82]
gi|262298463|gb|EEY86377.1| transcription termination factor Rho [Acinetobacter radioresistens
SH164]
gi|400205265|gb|EJO36246.1| transcription termination factor Rho [Acinetobacter radioresistens
WC-A-157]
gi|403189589|dbj|GAB73512.1| transcription termination factor Rho [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 420
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/345 (69%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFGDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ ++N + PE S+N+ LF+NLTPL P + L++E + E++T R++DL+
Sbjct: 106 EGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDE RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGG+D++AL+RPKRFFGAARNIEEGGSLTII+TALIETGS+MDDVIYEEFKGTGN E+ L
Sbjct: 286 TGGLDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+RR+AEKRV+PA+N+ KSGTRREE L+ ++ L+K+W+LRKLL+ +
Sbjct: 346 DRRIAEKRVFPAMNIKKSGTRREERLMSEENLRKVWILRKLLHPM 390
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 94/133 (70%), Gaps = 27/133 (20%)
Query: 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
+ + VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEM+R+VRGEV+ASTF
Sbjct: 173 RSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTF 232
Query: 545 DE-PA--------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PA L + +LARAYNTVIP+SGKVLTGG+D++
Sbjct: 233 DESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGLDAH 292
Query: 578 ALQRPKRFFGAAR 590
AL+RPKRFFGAAR
Sbjct: 293 ALERPKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 80/110 (72%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + R RKQ+++FAI K+ GE IFGDG LE+L DGFGFLRS +Y+A DDIY+S
Sbjct: 23 LEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G IR PK GERYFALLK+ ++N +P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKIL 132
>gi|34811277|pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
gi|34811278|pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
gi|34811279|pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
gi|34811280|pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
gi|34811281|pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
gi|34811282|pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/345 (70%), Positives = 294/345 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRXERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+ +LQ+IA +I NH + ++ V+LIDERPEEVTE QR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAE V+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+ D+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY 347
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK W+LRK+++
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKXWILRKIIH 388
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 88/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+ +LQ+IA +I NH + ++ V+LIDERPEEVTE QR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 83/110 (75%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENLARXRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|266618658|pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
gi|266618659|pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
gi|266618660|pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
gi|266618661|pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
gi|266618662|pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
gi|266618663|pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/345 (70%), Positives = 294/345 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 47 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 106
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L ER S E++T R++D
Sbjct: 107 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRXERGNGSTEDLTARVLD 166
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+ +LQ+IA +I NH + ++ V+LIDERPEEVTE QR V
Sbjct: 167 LASPIGRGQRGLIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLV 226
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAE V+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 227 KGEVVASTFDEPASRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 286
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+ D+VIYEEFKGTGN E+
Sbjct: 287 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXEL 346
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY 347
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK W+LRK+++
Sbjct: 347 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKXWILRKIIH 391
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 88/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+ +LQ+IA +I NH + ++ V+LIDERPEEVTE QR V+GEV+ASTFDEPA
Sbjct: 180 VAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLVKGEVVASTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 240 SRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 83/110 (75%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 26 LENLARXRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 86 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 135
>gi|329894564|ref|ZP_08270371.1| Transcription termination factor Rho [gamma proteobacterium
IMCC3088]
gi|328922972|gb|EGG30299.1| Transcription termination factor Rho [gamma proteobacterium
IMCC3088]
Length = 422
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 255/351 (72%), Positives = 308/351 (87%), Gaps = 3/351 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGDGVLEILSDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLK+ VN +KPE SK++ LF+NLTPL P + L+LE+ S E++TGRII
Sbjct: 103 PPKDSERYFALLKVGDVNFDKPENSKHKILFENLTPLFPDQRLMLEKGNGSSEDLTGRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGLLVA PK+GK+I++Q+IA AI +N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLVAPIGKGQRGLLVAPPKAGKTIMMQNIAQAIISNNPECYVIVLLIDERPEEVTEMQRS 222
Query: 182 V--RG-EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIP 238
V RG EV+ASTFDEP RHVQVA+MV+EKAKRLVE K+DVIILLDSITRLARAYNTVIP
Sbjct: 223 VGVRGAEVVASTFDEPPSRHVQVADMVIEKAKRLVEHKRDVIILLDSITRLARAYNTVIP 282
Query: 239 ASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTG 298
+SGKVLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATAL ETGS+MD+VIYEEFKGTG
Sbjct: 283 SSGKVLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALTETGSKMDEVIYEEFKGTG 342
Query: 299 NMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
NME+HL+R++AEKRVYPAIN+ +SGTRREELL +++LQ++W+LRKLL+ +
Sbjct: 343 NMELHLDRKVAEKRVYPAINIRRSGTRREELLTGEEELQRMWILRKLLHGM 393
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/132 (57%), Positives = 92/132 (69%), Gaps = 30/132 (22%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS--VRG-EVIASTFD 545
VA PK+GK+I++Q+IA AI +N+ E +IV+LIDERPEEVTEMQRS VRG EV+ASTFD
Sbjct: 177 VAPPKAGKTIMMQNIAQAIISNNPECYVIVLLIDERPEEVTEMQRSVGVRGAEVVASTFD 236
Query: 546 EPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNA 578
EP L + +LARAYNTVIP+SGKVLTGGVD++A
Sbjct: 237 EPPSRHVQVADMVIEKAKRLVEHKRDVIILLDSITRLARAYNTVIPSSGKVLTGGVDAHA 296
Query: 579 LQRPKRFFGAAR 590
L+RPKRFFGAAR
Sbjct: 297 LERPKRFFGAAR 308
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FAI K+ K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 EIGLDNMARSRKQDIIFAILKRHAKSGEDIYGDGVLEILSDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+ ERYFALLK+ VN P++ K IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKDSERYFALLKVGDVNFDKPENSKHKIL 132
>gi|146305350|ref|YP_001185815.1| transcription termination factor Rho [Pseudomonas mendocina ymp]
gi|421505567|ref|ZP_15952505.1| transcription termination factor Rho [Pseudomonas mendocina DLHK]
gi|145573551|gb|ABP83083.1| transcription termination factor Rho [Pseudomonas mendocina ymp]
gi|400343976|gb|EJO92348.1| transcription termination factor Rho [Pseudomonas mendocina DLHK]
Length = 419
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P K L +E S E+ITGR+ID
Sbjct: 104 PKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNKRLTMEAGNGSTEDITGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATALIETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALIETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKR +PAIN+NKSGTRREELL +++L ++W+LRKLL+ +
Sbjct: 344 ILDRRVAEKRTFPAININKSGTRREELLTGEEELSRMWILRKLLHPM 390
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>gi|92112717|ref|YP_572645.1| transcription termination factor Rho [Chromohalobacter salexigens
DSM 3043]
gi|91795807|gb|ABE57946.1| transcription termination factor Rho [Chromohalobacter salexigens
DSM 3043]
Length = 419
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/369 (65%), Positives = 311/369 (84%), Gaps = 2/369 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL GD + G+IR
Sbjct: 44 KSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ ++N ++PE +K++ LF+NLTPL P++ +++E S E++T R+ID
Sbjct: 104 PKEGERYFALLKVNEINFDRPENAKHKILFENLTPLFPQERMVMEIGNGSTEDLTSRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+V+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+V
Sbjct: 164 LTSPIGKGQRGLIVSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV++LLDSITRLARAYNTV+P+SGK
Sbjct: 224 RGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKRDVVVLLDSITRLARAYNTVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEA 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+R+LAEKRVYPA+N+ +SGTRRE+L+ ++++Q++W+LRKLL M + F I
Sbjct: 344 HLDRKLAEKRVYPALNIRRSGTRREDLIASEEEMQRMWILRKLLNP--MDDVAATEFLID 401
Query: 363 RTIPVEKNL 371
R + N+
Sbjct: 402 RLKDTKTNI 410
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +IT N+ E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD++AL++
Sbjct: 237 ARHVQVAEMVIEKAKRLVEHKRDVVVLLDSITRLARAYNTVVPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P +L + ++ ++++ R RKQ+++FAI KK K GE I+GDG LE+L DGFG
Sbjct: 6 LKQKTVPELLDIAR--EMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL G G+IR PK GERYFALLK+ ++N
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSIAGKIRPPKEGERYFALLKVNEINFDR 123
Query: 492 PKSGKSIIL 500
P++ K IL
Sbjct: 124 PENAKHKIL 132
>gi|257455704|ref|ZP_05620933.1| transcription termination factor Rho [Enhydrobacter aerosaccus
SK60]
gi|257446987|gb|EEV22001.1| transcription termination factor Rho [Enhydrobacter aerosaccus
SK60]
Length = 422
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/345 (70%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+GDG LE+LPDGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G IR PK
Sbjct: 46 GEAIYGDGVLEILPDGFGFLRSSEGSYLAGPDDIYVSPSQIRRFNLKTGDSIAGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ S+++ +F+NLTPL P + L LE + E++TGRIIDLI
Sbjct: 106 DSERYFALLKVNEINFDTPDRSRHKLIFENLTPLFPTQQLRLELGNGTTEDLTGRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ IA +IT N+ E +IV+LIDERPEEVTEMQR+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTVLLQSIAQSITKNNPECYLIVLLIDERPEEVTEMQRTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 226 EVVASTFDEPPARHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVLPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NAL+RPKRFFGAARN+EEGGSLTII+TALI+TGS MD VIYEEFKGTGN E+ L
Sbjct: 286 TGGVDANALERPKRFFGAARNVEEGGSLTIISTALIDTGSTMDKVIYEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
ER +AEKRV+PAIN+ KSGTRREE L+ + L+K+W+LRKLL+ +
Sbjct: 346 ERDIAEKRVFPAINIKKSGTRREERLMDEAMLRKVWILRKLLHPM 390
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 162/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FAI K + GE I+GDG LE+LPDGFGFLRS +Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFAILKTHARNGEAIYGDGVLEILPDGFGFLRSSEGSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP------------------ 492
PSQIRRFNL TG G IR PK+ ERYFALLK+ ++N +P
Sbjct: 83 PSQIRRFNLKTGDSIAGTIRPPKDSERYFALLKVNEINFDTPDRSRHKLIFENLTPLFPT 142
Query: 493 ---------------------------KSGKSII-----------LQHIAHAITTNHSEA 514
K +SII LQ IA +IT N+ E
Sbjct: 143 QQLRLELGNGTTEDLTGRIIDLIAPIGKGQRSIIVAPPKAGKTVLLQSIAQSITKNNPEC 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 203 YLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKQDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL+RPKRFFGAAR
Sbjct: 263 LLDSITRLARAYNTVLPSSGKVLTGGVDANALERPKRFFGAAR 305
>gi|238765159|ref|ZP_04626092.1| Transcription termination factor rho [Yersinia kristensenii ATCC
33638]
gi|238696649|gb|EEP89433.1| Transcription termination factor rho [Yersinia kristensenii ATCC
33638]
Length = 385
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/343 (72%), Positives = 299/343 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRK 344
+HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LR+
Sbjct: 343 LHLSRKIAEKRVFPAIDFNRSGTRKEELLTTTEELQKMWILRR 385
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTVAGKIRPPKEGERYFALLKVNEVNYDKPENARNKIL 132
>gi|148654107|ref|YP_001281200.1| transcription termination factor Rho [Psychrobacter sp. PRwf-1]
gi|148573191|gb|ABQ95250.1| transcription termination factor Rho [Psychrobacter sp. PRwf-1]
Length = 432
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/361 (68%), Positives = 301/361 (83%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+GDG LEVLPDGFGFLRS +Y+A DDIY+SPSQIRRF+L TGD + G IR
Sbjct: 54 KNGEAIYGDGVLEVLPDGFGFLRSSEGSYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRP 113
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLK+ ++N + P+ S+++ +F+NLTPL P + L LE + E++TGR+ID
Sbjct: 114 PKDSERYFALLKVGEINFDTPDRSRHKLIFENLTPLFPTEQLKLEMGNGTTEDLTGRVID 173
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LIAPIGKGQR ++VA PK+GK+++LQ IA +IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 174 LIAPIGKGQRSIIVAPPKAGKTVLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMQRTV 233
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 234 RGEVVASTFDEPPQRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVVPSSGK 293
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL +PKRFFGAARNIEEGGSLTII+TALI+TGS+MD VI+EEFKGTGN E+
Sbjct: 294 VLTGGVDANALAQPKRFFGAARNIEEGGSLTIISTALIDTGSKMDSVIFEEFKGTGNQEI 353
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
LER LAEKRV+PAIN+ KSGTRREE L+ +D L+K+W+LRKLL M + F +
Sbjct: 354 TLERDLAEKRVFPAINIKKSGTRREERLLDEDTLRKVWILRKLLQP--MDGVQATEFLLD 411
Query: 363 R 363
R
Sbjct: 412 R 412
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 165/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FAI KK K GE I+GDG LEVLPDGFGFLRS +Y+A DDI
Sbjct: 30 EMGLDNLARSRKQDIIFAILKKHAKNGEAIYGDGVLEVLPDGFGFLRSSEGSYLAGPDDI 89
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP--------------- 492
Y+SPSQIRRF+L TG G IR PK+ ERYFALLK+ ++N +P
Sbjct: 90 YVSPSQIRRFSLKTGDSIAGTIRPPKDSERYFALLKVGEINFDTPDRSRHKLIFENLTPL 149
Query: 493 ------------------------------KSGKSII-----------LQHIAHAITTNH 511
K +SII LQ IA +IT N+
Sbjct: 150 FPTEQLKLEMGNGTTEDLTGRVIDLIAPIGKGQRSIIVAPPKAGKTVLLQTIAQSITRNN 209
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 210 PECYLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPQRHVQVAEMVIEKAKRLVEHKQD 269
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NAL +PKRFFGAAR
Sbjct: 270 VVILLDSITRLARAYNTVVPSSGKVLTGGVDANALAQPKRFFGAAR 315
>gi|424863969|ref|ZP_18287881.1| transcription termination factor Rho [SAR86 cluster bacterium
SAR86A]
gi|400757290|gb|EJP71502.1| transcription termination factor Rho [SAR86 cluster bacterium
SAR86A]
Length = 425
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/346 (69%), Positives = 296/346 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K G IFG G LE+L DGFGFLRS +Y A DDIY+SPSQIR+F L GD VEG+I
Sbjct: 42 KASEGTDIFGGGVLEILNDGFGFLRSPQGSYCAGEDDIYVSPSQIRKFGLRKGDSVEGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+++ +NGE+P +KN+ LF+NLTPL P + L+LE+ S E+++ RI
Sbjct: 102 RTPKDKERYFALIQVDTINGEEPAKTKNKILFENLTPLFPTERLMLEQGSGSNEDLSSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAP+GKGQRGL+V+ PK+GK+++LQ IAH+I N+ E +IV+LIDERPEEVT+M R
Sbjct: 162 IDLIAPVGKGQRGLIVSPPKAGKTLMLQSIAHSIKANNPEVELIVLLIDERPEEVTDMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEP RHVQVA MV+EKAKRLVE KKDV+ILLDSITRL RAYN+V PAS
Sbjct: 222 TVKGEVVASTFDEPPTRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVDSNAL+RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNM
Sbjct: 282 GKILSGGVDSNALERPKRFFGAARNLEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+HLER++AEKR+YPAIN+ +SGTRRE+LL DD+LQ++WVLRK+L
Sbjct: 342 EIHLERKIAEKRIYPAINIRRSGTRREDLLTSDDELQRMWVLRKIL 387
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ IAH+I N+ E +IV+LIDERPEEVT+M R+V+GEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQSIAHSIKANNPEVELIVLLIDERPEEVTDMSRTVKGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN+V PASGK+L+GGVDSNAL+R
Sbjct: 237 TRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPASGKILSGGVDSNALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 76/113 (67%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + + RL+KQE++F IFK K G IFG G LE+L DGFGFLRS +Y A DDI
Sbjct: 20 ELGLEDLGRLKKQEIIFRIFKHKASEGTDIFGGGVLEILNDGFGFLRSPQGSYCAGEDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIR+F L G +G+IR PK+ ERYFAL+++ +N P K+ IL
Sbjct: 80 YVSPSQIRKFGLRKGDSVEGKIRTPKDKERYFALIQVDTINGEEPAKTKNKIL 132
>gi|359782369|ref|ZP_09285590.1| transcription termination factor Rho [Pseudomonas psychrotolerans
L19]
gi|359369636|gb|EHK70206.1| transcription termination factor Rho [Pseudomonas psychrotolerans
L19]
Length = 420
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K G+ I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGDEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P K L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKVLFENLTPLFPNKRLTMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANITRNNPECYLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LERR+AEKRV+PAIN+NKSGTRREELL +++L ++W+LRK+L+ +
Sbjct: 344 PLERRIAEKRVFPAININKSGTRREELLTDEEELSRMWILRKILHPM 390
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANITRNNPECYLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K G+ I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKGGDEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ +L
Sbjct: 83 PSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDTINFDRPENAKNKVL 132
>gi|418294074|ref|ZP_12905975.1| transcription termination factor Rho [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
gi|379065458|gb|EHY78201.1| transcription termination factor Rho [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
Length = 419
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVIGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINYDRPENAKNKILFENLTPLFANQRLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGN+E+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNLEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL +++LQ+IW+LRKLL+ +
Sbjct: 344 QLDRRIAEKRVFPAININRSGTRREELLTSEEELQRIWILRKLLHPM 390
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 86/122 (70%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L +AE ID ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS S
Sbjct: 15 LEMAEQMGID----NMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADS 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLRTGDTVIGKIRPPKEGERYFALLKVDSINYDRPENAKNK 130
Query: 499 IL 500
IL
Sbjct: 131 IL 132
>gi|416054617|ref|ZP_11579241.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348003468|gb|EGY44072.1| transcription termination factor Rho [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
Length = 421
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/346 (69%), Positives = 296/346 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ + G + LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+I
Sbjct: 44 RQRWGRYFSAAACWKFLPDGFGFLRSDDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKI 103
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI
Sbjct: 104 RPPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARI 163
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQR
Sbjct: 164 LDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQR 223
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PAS
Sbjct: 224 SVKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVVILLDSITRLARAYNTVTPAS 283
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNM
Sbjct: 284 GKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNM 343
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+HL R++AEKRV+PAI+ N+SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 ELHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKMWILRKIL 389
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/284 (46%), Positives = 165/284 (58%), Gaps = 84/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSL-EVLPDGFGFLRSQGSNYMASSDDIYL 449
+ ++ RLRKQ+++FAIF+ + R F + + LPDGFGFLRS S+Y+A DDIY+
Sbjct: 24 LENLARLRKQDIIFAIFETARQRWGRYFSAAACWKFLPDGFGFLRSDDSSYLAGPDDIYV 83
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--------------------- 488
SPSQIRRFNL TG +G+IR PK GERYFALLK+ +VN
Sbjct: 84 SPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHA 143
Query: 489 ----------------------VASP-------------KSGKSIILQHIAHAITTNHSE 513
+ASP K+GK+++LQ+IA +IT N+ +
Sbjct: 144 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 203
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 204 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDVV 263
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 264 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 307
>gi|89093775|ref|ZP_01166721.1| transcription termination factor Rho [Neptuniibacter caesariensis]
gi|89081905|gb|EAR61131.1| transcription termination factor Rho [Oceanospirillum sp. MED92]
Length = 419
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/353 (68%), Positives = 306/353 (86%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I+G+G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KGGEDIYGNGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ ++N +KP+ +KN+ LF+NLTPL + L +E S E++T R+ID
Sbjct: 104 PKDGERYFALLKVNEINYDKPDNAKNKILFENLTPLFAQDRLRMEIGNGSTEDLTARVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+ P+GKGQR L+V+ PK+GK+++LQ+IA++IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LVCPMGKGQRALVVSPPKAGKTLMLQNIANSITRNNPETHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRL E KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPSRHVQVAEMVIEKAKRLTEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL+RPKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGN EV
Sbjct: 284 VLTGGVDAHALERPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNSEV 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFT 355
HL+R++AEKRV+PAIN+ +SGTRRE+LL +++LQ++W+LRKLL + T+ T
Sbjct: 344 HLDRKVAEKRVFPAINIRRSGTRREDLLTSEEELQRMWILRKLLDPMEDTAAT 396
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA++IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQNIANSITRNNPETHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL+R
Sbjct: 237 SRHVQVAEMVIEKAKRLTEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
++++ R RKQ+++FAI K+ K GE I+G+G LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 MDNLARSRKQDVIFAILKRHAKGGEDIYGNGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK+GERYFALLK+ ++N P + K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEINYDKPDNAKNKIL 132
>gi|330501283|ref|YP_004378152.1| transcription termination factor Rho [Pseudomonas mendocina NK-01]
gi|328915569|gb|AEB56400.1| transcription termination factor Rho [Pseudomonas mendocina NK-01]
Length = 419
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + L +E S E+ITGR+ID
Sbjct: 104 PKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNQRLTMEAGNGSTEDITGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATALIETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALIETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKR +PAIN+NKSGTRREELL +++L ++W+LRKLL+ +
Sbjct: 344 ILDRRVAEKRTFPAININKSGTRREELLTGEEELSRMWILRKLLHPM 390
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>gi|226946748|ref|YP_002801821.1| transcription termination factor Rho [Azotobacter vinelandii DJ]
gi|226721675|gb|ACO80846.1| transcription termination factor Rho protein [Azotobacter
vinelandii DJ]
Length = 419
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNARLTMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGN+E+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL +++LQ++W+LRK+L+ +
Sbjct: 344 QLDRRVAEKRVFPAININRSGTRREELLTGEEELQRMWILRKILHPM 390
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>gi|15804373|ref|NP_290413.1| transcription termination factor Rho [Escherichia coli O157:H7 str.
EDL933]
gi|25299646|pir||E86064 hypothetical protein rho [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12518646|gb|AAG58977.1|AE005610_1 transcription termination factor Rho; polarity suppressor
[Escherichia coli O157:H7 str. EDL933]
Length = 419
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 302/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL R++AE RV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 343 LHLSRKIAEXRVFPAIDYNRSGTRKEELLTXQEELQKMWILRKIIHPM 390
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>gi|254490406|ref|ZP_05103594.1| transcription termination factor Rho [Methylophaga thiooxidans
DMS010]
gi|224464393|gb|EEF80654.1| transcription termination factor Rho [Methylophaga thiooxydans
DMS010]
Length = 419
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 245/345 (71%), Positives = 297/345 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE + G LE+LPDGFGFLRS +Y+A DD+Y+SPSQIRRF+L TGD + G+IR
Sbjct: 43 SKQGEDVVTTGVLELLPDGFGFLRSPEDSYIAGPDDVYVSPSQIRRFHLRTGDTIMGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFAL+K++++N EKP+ S+N+ F+NLTPL P + LER S E++T R+I
Sbjct: 103 PPKDSERYFALVKVEEINYEKPDKSRNKVPFENLTPLFPNERFNLERGNGSTEDLTARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PKSGK++ILQ IA +I N+ ++ +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLAAPIGKGQRGLIVAPPKSGKTMILQSIAQSIALNYPDSDLIVLLIDERPEEVTEMQRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV++STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV P+SG
Sbjct: 223 VRGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVSPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGN E
Sbjct: 283 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNNE 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
V LER+LA++R+YPAIN+ +SGTRREELL ++ LQK+W+LRK+L
Sbjct: 343 VLLERKLADRRMYPAINVTRSGTRREELLTNEEDLQKLWILRKIL 387
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK++ILQ IA +I N+ ++ +IV+LIDERPEEVTEMQRSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTMILQSIAQSIALNYPDSDLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVSPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 78/111 (70%)
Query: 387 IDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDD 446
+ + + + R RKQEL+FAI K +K GE + G LE+LPDGFGFLRS +Y+A DD
Sbjct: 19 LSMNLEGLARNRKQELIFAIVKAHSKQGEDVVTTGVLELLPDGFGFLRSPEDSYIAGPDD 78
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKS 497
+Y+SPSQIRRF+L TG G+IR PK+ ERYFAL+K++++N P ++
Sbjct: 79 VYVSPSQIRRFHLRTGDTIMGKIRPPKDSERYFALVKVEEINYEKPDKSRN 129
>gi|296113953|ref|YP_003627891.1| transcription termination factor Rho [Moraxella catarrhalis RH4]
gi|416156877|ref|ZP_11604791.1| transcription termination factor Rho [Moraxella catarrhalis
101P30B1]
gi|416218943|ref|ZP_11625131.1| transcription termination factor Rho [Moraxella catarrhalis 7169]
gi|416222112|ref|ZP_11626035.1| transcription termination factor Rho [Moraxella catarrhalis
103P14B1]
gi|416229578|ref|ZP_11628095.1| transcription termination factor Rho [Moraxella catarrhalis
46P47B1]
gi|416232883|ref|ZP_11629107.1| transcription termination factor Rho [Moraxella catarrhalis
12P80B1]
gi|416237425|ref|ZP_11630936.1| transcription termination factor Rho [Moraxella catarrhalis BC1]
gi|416242975|ref|ZP_11633766.1| transcription termination factor Rho [Moraxella catarrhalis BC7]
gi|416248300|ref|ZP_11636219.1| transcription termination factor Rho [Moraxella catarrhalis BC8]
gi|416251642|ref|ZP_11637851.1| transcription termination factor Rho [Moraxella catarrhalis CO72]
gi|416256466|ref|ZP_11639700.1| transcription termination factor Rho [Moraxella catarrhalis O35E]
gi|421780739|ref|ZP_16217226.1| transcription termination factor Rho [Moraxella catarrhalis RH4]
gi|295921647|gb|ADG61998.1| transcription termination factor Rho [Moraxella catarrhalis BBH18]
gi|326559330|gb|EGE09757.1| transcription termination factor Rho [Moraxella catarrhalis 7169]
gi|326562455|gb|EGE12773.1| transcription termination factor Rho [Moraxella catarrhalis
46P47B1]
gi|326564294|gb|EGE14524.1| transcription termination factor Rho [Moraxella catarrhalis
103P14B1]
gi|326567228|gb|EGE17348.1| transcription termination factor Rho [Moraxella catarrhalis
12P80B1]
gi|326568267|gb|EGE18349.1| transcription termination factor Rho [Moraxella catarrhalis BC8]
gi|326569967|gb|EGE20014.1| transcription termination factor Rho [Moraxella catarrhalis BC1]
gi|326570049|gb|EGE20095.1| transcription termination factor Rho [Moraxella catarrhalis BC7]
gi|326572903|gb|EGE22888.1| transcription termination factor Rho [Moraxella catarrhalis CO72]
gi|326573850|gb|EGE23803.1| transcription termination factor Rho [Moraxella catarrhalis O35E]
gi|326574729|gb|EGE24665.1| transcription termination factor Rho [Moraxella catarrhalis
101P30B1]
gi|407812035|gb|EKF82822.1| transcription termination factor Rho [Moraxella catarrhalis RH4]
Length = 422
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/359 (66%), Positives = 302/359 (84%), Gaps = 2/359 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+G+G LE+LPDGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR PK
Sbjct: 46 GEAIYGNGVLEILPDGFGFLRSSEGSYLAGPDDIYVSPSQIRRFNLQTGDSIAGQIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ S+++ +F+NLTPL P + L+LE + E++TGRIIDLI
Sbjct: 106 DSERYFALLKVSEINFDTPDRSRHKLIFENLTPLFPTQQLVLEAGNGTTEDLTGRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ IA AIT NH E +IV+LIDERPEEVTEMQR+V G
Sbjct: 166 APIGKGQRSIIVAPPKAGKTVLLQTIAQAITKNHPECYLIVLLIDERPEEVTEMQRTVWG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEP RH+QVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEPPQRHIQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD++AL+RPKRFFGAARN+EEGGSLTII+TALI+TGS+MD VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDAHALERPKRFFGAARNVEEGGSLTIISTALIDTGSKMDSVIFEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKR 363
ER LAE+R++PAIN+ KS TRREE L+ +D L+++W+LRKL+ M + F ++R
Sbjct: 346 ERELAERRIFPAINIKKSSTRREERLLDEDTLRRVWILRKLMQP--MEDAQATEFLLER 402
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/295 (46%), Positives = 167/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L +AE +D ++ R RKQ+++FAI K + GE I+G+G LE+LPDGFGFLRS
Sbjct: 15 LAIAEHMGLD----NMARSRKQDIIFAILKTHARNGEAIYGNGVLEILPDGFGFLRSSEG 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP------ 492
+Y+A DDIY+SPSQIRRFNL TG G+IR PK+ ERYFALLK+ ++N +P
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLQTGDSIAGQIRPPKDSERYFALLKVSEINFDTPDRSRHK 130
Query: 493 ---------------------------------------KSGKSII-----------LQH 502
K +SII LQ
Sbjct: 131 LIFENLTPLFPTQQLVLEAGNGTTEDLTGRIIDLIAPIGKGQRSIIVAPPKAGKTVLLQT 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IA AIT NH E +IV+LIDERPEEVTEMQR+V GEV+ASTFDEP
Sbjct: 191 IAQAITKNHPECYLIVLLIDERPEEVTEMQRTVWGEVVASTFDEPPQRHIQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD++AL+RPKRFFGAAR
Sbjct: 251 KRLVEHKQDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRFFGAAR 305
>gi|328952409|ref|YP_004369743.1| transcription termination factor Rho [Desulfobacca acetoxidans DSM
11109]
gi|328452733|gb|AEB08562.1| transcription termination factor Rho [Desulfobacca acetoxidans DSM
11109]
Length = 421
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/343 (69%), Positives = 295/343 (86%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LE+LPDGFGFLR NY+ DDIY+SPSQIRRFNL TGD V G+IR PK GE
Sbjct: 55 IYGEGVLEILPDGFGFLRCPDYNYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRPPKEGE 114
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ +N E PE ++++ LFDNLTPL+P + L LE +N + RI+DL+ PI
Sbjct: 115 RYFALLKVEHINFEDPESTRDKILFDNLTPLYPNQRLHLE---TGPDNFSPRIMDLMTPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA+P++GK+++LQ IA+++ TNH E I+IV+LIDERPEEVT+MQRSV+ EV+
Sbjct: 172 GKGQRGLIVAAPRTGKTMLLQSIANSVVTNHPEVILIVLLIDERPEEVTDMQRSVKAEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDE A RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P SGK+L+GG
Sbjct: 232 SSTFDEQAQRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPPSGKILSGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL RPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGNME+HL+R+
Sbjct: 292 VDSNALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIHLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L EKR++P+I++N+SGTR+EELL+ D L +IW+LRKLL L
Sbjct: 352 LVEKRIFPSIDINRSGTRKEELLLPQDDLNRIWILRKLLSPLN 394
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 161/274 (58%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
LRKQEL+FAI + +T+ I+G+G LE+LPDGFGFLR NY+ DDIY+SPSQIRR
Sbjct: 35 LRKQELIFAILQAQTEKNGFIYGEGVLEILPDGFGFLRCPDYNYLPGPDDIYVSPSQIRR 94
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GERYFALLK++ +N
Sbjct: 95 FNLRTGDTVSGQIRPPKEGERYFALLKVEHINFEDPESTRDKILFDNLTPLYPNQRLHLE 154
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA+P++GK+++LQ IA+++ TNH E I+IV+LIDE
Sbjct: 155 TGPDNFSPRIMDLMTPIGKGQRGLIVAAPRTGKTMLLQSIANSVVTNHPEVILIVLLIDE 214
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+MQRSV+ EV++STFDE A L + +LA
Sbjct: 215 RPEEVTDMQRSVKAEVVSSTFDEQAQRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLA 274
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYNTV+P SGK+L+GGVDSNAL RPKRFFGAAR
Sbjct: 275 RAYNTVVPPSGKILSGGVDSNALHRPKRFFGAAR 308
>gi|400287321|ref|ZP_10789353.1| transcription termination factor Rho [Psychrobacter sp. PAMC 21119]
Length = 422
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/359 (68%), Positives = 301/359 (83%), Gaps = 2/359 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+GDG LEVLPDGFGFLRS +Y+A DDIY+SPSQIRRF+L TGD + G IR PK
Sbjct: 46 GEAIYGDGVLEVLPDGFGFLRSSEGSYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ S+++ +F+NLTPL P + L LE + E++TGRIIDLI
Sbjct: 106 DSERYFALLKVGEINFDTPDRSRHKLIFENLTPLFPTEQLKLELGNGTTEDLTGRIIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR ++VA PK+GK+++LQ IA +IT N+ E +IV+LIDERPEEVTEM R+VRG
Sbjct: 166 APIGKGQRSIIVAPPKAGKTMLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMVRTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEPPQRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGG+D+NAL+RPKRFFGAARN+EEGGSLTIIA+ALI+TGS+MD VI+EEFKGTGN E+ L
Sbjct: 286 TGGLDANALERPKRFFGAARNVEEGGSLTIIASALIDTGSKMDSVIFEEFKGTGNQEITL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKR 363
ER LAEKRV+PAIN+ KSGTRREE L+ +DKL+K+W+LRKLL M + F + R
Sbjct: 346 ERDLAEKRVFPAINIKKSGTRREERLLDEDKLRKVWILRKLLQP--MDGVQATEFLLDR 402
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ ++++ R RKQ+++FAI K + GE I+GDG LEVLPDGFGFLRS +Y+A DDI
Sbjct: 20 EMGLDNMARSRKQDIIFAILKTHARNGEAIYGDGVLEVLPDGFGFLRSSEGSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP--------------- 492
Y+SPSQIRRF+L TG G IR PK+ ERYFALLK+ ++N +P
Sbjct: 80 YVSPSQIRRFSLKTGDSIAGTIRPPKDSERYFALLKVGEINFDTPDRSRHKLIFENLTPL 139
Query: 493 ------------------------------KSGKSII-----------LQHIAHAITTNH 511
K +SII LQ IA +IT N+
Sbjct: 140 FPTEQLKLELGNGTTEDLTGRIIDLIAPIGKGQRSIIVAPPKAGKTMLLQTIAQSITRNN 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEM R+VRGEV+ASTFDEP
Sbjct: 200 PECYLIVLLIDERPEEVTEMVRTVRGEVVASTFDEPPQRHVQVAEMVIEKAKRLVEHKQD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGG+D+NAL+RPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVIPSSGKVLTGGLDANALERPKRFFGAAR 305
>gi|45644647|gb|AAS73035.1| predicted transcription termination factor Rho [uncultured marine
gamma proteobacterium EBAC20E09]
Length = 425
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/346 (68%), Positives = 297/346 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K G I+G G LE+L DGFGFLRS +Y A DDIY+SPSQIR+F L GD VEG+I
Sbjct: 42 KASEGTDIYGGGVLEILNDGFGFLRSPQGSYCAGEDDIYVSPSQIRKFGLRKGDSVEGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+++ +NGE+P +KN+ LF+NLTPL P + L+LE+ S E+++ RI
Sbjct: 102 RTPKDKERYFALIQVDTINGEEPAKTKNKILFENLTPLFPTERLMLEQGSGSNEDLSSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAP+GKGQRGL+V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVT+M R
Sbjct: 162 IDLIAPVGKGQRGLIVSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTDMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEP RHVQVA MV+EKAKRLVE KKDV+ILLDSITRL RAYN+V PAS
Sbjct: 222 TVKGEVVASTFDEPPTRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVDSNAL+RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNM
Sbjct: 282 GKILSGGVDSNALERPKRFFGAARNLEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+HLER++AEKR+YPAIN+ +SGTRRE+LL D++LQ++WVLRK+L
Sbjct: 342 EIHLERKIAEKRIYPAINIRRSGTRREDLLTTDEELQRMWVLRKIL 387
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVT+M R+V+GEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTDMSRTVKGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN+V PASGK+L+GGVDSNAL+R
Sbjct: 237 TRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPASGKILSGGVDSNALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 76/113 (67%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + + RL+KQE++F IFK K G I+G G LE+L DGFGFLRS +Y A DDI
Sbjct: 20 ELGLEDLGRLKKQEIIFRIFKHKASEGTDIYGGGVLEILNDGFGFLRSPQGSYCAGEDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIR+F L G +G+IR PK+ ERYFAL+++ +N P K+ IL
Sbjct: 80 YVSPSQIRKFGLRKGDSVEGKIRTPKDKERYFALIQVDTINGEEPAKTKNKIL 132
>gi|392422775|ref|YP_006459379.1| transcription termination factor Rho [Pseudomonas stutzeri CCUG
29243]
gi|431928802|ref|YP_007241836.1| transcription termination factor Rho [Pseudomonas stutzeri RCH2]
gi|390984963|gb|AFM34956.1| transcription termination factor Rho [Pseudomonas stutzeri CCUG
29243]
gi|431827089|gb|AGA88206.1| transcription termination factor Rho [Pseudomonas stutzeri RCH2]
Length = 419
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL + L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINYDRPENAKNKILFENLTPLFANERLKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGN+E+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL +++LQ+IW+LRKLL+ +
Sbjct: 344 QLDRRIAEKRVFPAININRSGTRREELLTSEEELQRIWILRKLLHPM 390
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 86/122 (70%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L +AE ID ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS S
Sbjct: 15 LEMAEQMGID----NMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADS 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSINYDRPENAKNK 130
Query: 499 IL 500
IL
Sbjct: 131 IL 132
>gi|406912113|gb|EKD51777.1| hypothetical protein ACD_62C00178G0004 [uncultured bacterium]
Length = 570
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/344 (69%), Positives = 296/344 (86%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LE LPDGFGFLRS+ NY+ DDIY+SPSQIRRFNL TGD V G+ R PK GE
Sbjct: 204 IYGEGVLETLPDGFGFLRSEDYNYLPGPDDIYVSPSQIRRFNLRTGDTVFGQTRPPKEGE 263
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ VN E EL++++ LFDNLTPL+P++ LE + K+ T RIIDL++PI
Sbjct: 264 RYFALLKVDAVNFEPAELARHKVLFDNLTPLYPEQKFNLEHD---KKETTSRIIDLLSPI 320
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ IA+AIT NH E +IV+LIDERPEEVT+M+RSV+GEVI
Sbjct: 321 GKGQRALVVAPPRTGKTMMLQKIANAITANHPEVALIVLLIDERPEEVTDMERSVKGEVI 380
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P SGK+L+GG
Sbjct: 381 SSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPPSGKILSGG 440
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARNIE GGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+HL+R+
Sbjct: 441 VDSNALHKPKRFFGAARNIEHGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIHLDRK 500
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR++P +++NKSGTR+EELL++ D L ++W+LRKLL+SL +
Sbjct: 501 LMEKRIFPCMDVNKSGTRKEELLLEPDVLSRVWILRKLLHSLNV 544
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 161/280 (57%), Gaps = 80/280 (28%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V++ L++QE++FAI + + I+G+G LE LPDGFGFLRS+ NY+ DDIY+S
Sbjct: 178 VDNAAGLKRQEIIFAILQTQIDSTGEIYGEGVLETLPDGFGFLRSEDYNYLPGPDDIYVS 237
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFNL TG G+ R PK GERYFALLK+ VN
Sbjct: 238 PSQIRRFNLRTGDTVFGQTRPPKEGERYFALLKVDAVNFEPAELARHKVLFDNLTPLYPE 297
Query: 489 -------------------------------VASPKSGKSIILQHIAHAITTNHSEAIMI 517
VA P++GK+++LQ IA+AIT NH E +I
Sbjct: 298 QKFNLEHDKKETTSRIIDLLSPIGKGQRALVVAPPRTGKTMMLQKIANAITANHPEVALI 357
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVT+M+RSV+GEVI+STFDEPA L
Sbjct: 358 VLLIDERPEEVTDMERSVKGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLD 417
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYNTV+P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 418 SITRLARAYNTVVPPSGKILSGGVDSNALHKPKRFFGAAR 457
>gi|118602489|ref|YP_903704.1| transcription termination factor Rho [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|118567428|gb|ABL02233.1| transcription termination factor Rho [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 424
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/358 (67%), Positives = 296/358 (82%), Gaps = 2/358 (0%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
E I GDG L+VL DG+GFLRS +Y + +DDIY+SP+QIRRFNL GD V G+IR PK
Sbjct: 51 EEILGDGILDVLQDGYGFLRSSDDSYTSGADDIYISPNQIRRFNLSIGDLVSGKIRAPKK 110
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
GE+YFAL+K+ +VNGE P KNR LF + TP+HP + L LE E+IT R+IDL+A
Sbjct: 111 GEKYFALIKVLEVNGEDPNNVKNRVLFASPTPIHPNERLNLEIGNGGTEDITARVIDLVA 170
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
P GKGQRGLLVA PK+GK++I+Q+IA +I+ NH+E +IV+LIDERPEEVTEM R+VRGE
Sbjct: 171 PFGKGQRGLLVAPPKAGKTMIMQNIATSISVNHTECELIVLLIDERPEEVTEMARTVRGE 230
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VIASTFDE A RHVQVAEMV++KAKR E KDVIILLDSITRLARAYNT+ P+SGKVLT
Sbjct: 231 VIASTFDESAKRHVQVAEMVIQKAKRRAEQGKDVIILLDSITRLARAYNTIAPSSGKVLT 290
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIE GGS+TIIATALI+TGS+MD+VIY+EFKGTGNME+HLE
Sbjct: 291 GGVDANALQRPKRFFGAARNIENGGSITIIATALIDTGSKMDEVIYQEFKGTGNMELHLE 350
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKR 363
+RL+EKR++PAIN+N SGTRREEL+ + +LQKIW+LRK+L+ M + + F I R
Sbjct: 351 KRLSEKRIFPAININASGTRREELITNEKELQKIWILRKILHP--MDTVEAAEFLIDR 406
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 144/291 (49%), Gaps = 95/291 (32%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF---------------- 430
L ++ R +KQ L+F I K K E I GDG L+VL D GF
Sbjct: 25 LGAENISRAKKQTLIFIILKAKAANDEEILGDGILDVLQDGYGFLRSSDDSYTSGADDIY 84
Query: 431 ------------------GFLRS--QGSNYMA-------SSDD--------IYLSPSQIR 455
G +R+ +G Y A + +D ++ SP+ I
Sbjct: 85 ISPNQIRRFNLSIGDLVSGKIRAPKKGEKYFALIKVLEVNGEDPNNVKNRVLFASPTPIH 144
Query: 456 ---RFNLHTGILWKGEIR------VPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHA 506
R NL G +I V G+ LL VA PK+GK++I+Q+IA +
Sbjct: 145 PNERLNLEIGNGGTEDITARVIDLVAPFGKGQRGLL------VAPPKAGKTMIMQNIATS 198
Query: 507 ITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------ 548
I+ NH+E +IV+LIDERPEEVTEM R+VRGEVIASTFDE A
Sbjct: 199 ISVNHTECELIVLLIDERPEEVTEMARTVRGEVIASTFDESAKRHVQVAEMVIQKAKRRA 258
Query: 549 ---------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT+ P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 259 EQGKDVIILLDSITRLARAYNTIAPSSGKVLTGGVDANALQRPKRFFGAAR 309
>gi|302036341|ref|YP_003796663.1| transcription termination factor Rho [Candidatus Nitrospira
defluvii]
gi|300604405|emb|CBK40737.1| Transcription termination factor Rho [Candidatus Nitrospira
defluvii]
Length = 423
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/342 (70%), Positives = 293/342 (85%), Gaps = 3/342 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
+FG+G LE LPDGFGFLR+ SNY+ DDIY+SPSQIRRFNL TGD V G+IR PK E
Sbjct: 57 VFGEGVLETLPDGFGFLRAPDSNYLPGPDDIYISPSQIRRFNLRTGDIVSGQIRPPKESE 116
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++KVN E PE+++++ LFDNLTPL+P++ L LE + +E R++DL PI
Sbjct: 117 RYFALLKVEKVNYEDPEVARDKILFDNLTPLYPEERLNLEFD---REEYCTRVMDLTTPI 173
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA+P++GK+++LQ IA AI NH E +IV+LIDERPEEVT+ QR V+ EVI
Sbjct: 174 GKGQRGLIVAAPRTGKTMLLQAIARAILKNHKEVTLIVLLIDERPEEVTDWQRQVKAEVI 233
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RH QVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYNT+ P SGKVL+GG
Sbjct: 234 SSTFDEPAQRHAQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTIAPPSGKVLSGG 293
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
+DSNALQRPKRFFGAARNIE GGSLTI+ATALI+TGSRMDDVI+EEFKGTGNMEVHL+RR
Sbjct: 294 LDSNALQRPKRFFGAARNIENGGSLTIMATALIDTGSRMDDVIFEEFKGTGNMEVHLDRR 353
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LA+KR++PAI++++SGTR+EELL+ D+L K+W+LRK+L L
Sbjct: 354 LADKRLFPAIDISQSGTRKEELLVDRDRLNKMWILRKVLSPL 395
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 163/283 (57%), Gaps = 80/283 (28%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL++ LRKQEL+FAI + +T+ +FG+G LE LPDGFGFLR+ SNY+ DDI
Sbjct: 28 DLKIEGAANLRKQELIFAILQAQTEKNGVVFGEGVLETLPDGFGFLRAPDSNYLPGPDDI 87
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------- 488
Y+SPSQIRRFNL TG + G+IR PK ERYFALLK++KVN
Sbjct: 88 YISPSQIRRFNLRTGDIVSGQIRPPKESERYFALLKVEKVNYEDPEVARDKILFDNLTPL 147
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA+P++GK+++LQ IA AI NH E
Sbjct: 148 YPEERLNLEFDREEYCTRVMDLTTPIGKGQRGLIVAAPRTGKTMLLQAIARAILKNHKEV 207
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+ QR V+ EVI+STFDEPA
Sbjct: 208 TLIVLLIDERPEEVTDWQRQVKAEVISSTFDEPAQRHAQVAEMVLEKAKRLVEHKKDVVI 267
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT+ P SGKVL+GG+DSNALQRPKRFFGAAR
Sbjct: 268 LLDSITRLARAYNTIAPPSGKVLSGGLDSNALQRPKRFFGAAR 310
>gi|407768084|ref|ZP_11115463.1| transcription termination factor Rho [Thalassospira xiamenensis M-5
= DSM 17429]
gi|407288797|gb|EKF14274.1| transcription termination factor Rho [Thalassospira xiamenensis M-5
= DSM 17429]
Length = 420
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/341 (70%), Positives = 298/341 (87%), Gaps = 2/341 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LEVLPDGFGFLRS +NY+A DDIY+SPSQ+RRF L TGD VEG+IR PK GE
Sbjct: 49 IFGEGVLEVLPDGFGFLRSPEANYLAGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNI--ESKENITGRIIDLIA 125
RYFALLK+ KVN + PE ++R FDNLTPL+P + L +ER++ E ++IT R+I+L++
Sbjct: 109 RYFALLKVDKVNFDAPEKVRHRINFDNLTPLYPDEPLKMERHLDQEGNKDITNRVIELVS 168
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
P+GKGQR L+VA P++GK+++LQ+IAHAI NH EA +IV+LIDERPEEVT+M RSV+GE
Sbjct: 169 PLGKGQRALIVAPPRTGKTVMLQNIAHAIEENHPEAYLIVLLIDERPEEVTDMDRSVKGE 228
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VI+STFDEPA RHVQV EMVLEKAKRLVE K DV+ILLDSITRLARAYNTV+P+SGKVLT
Sbjct: 229 VISSTFDEPAQRHVQVTEMVLEKAKRLVEHKHDVVILLDSITRLARAYNTVVPSSGKVLT 288
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+
Sbjct: 289 GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELILD 348
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
R+L++KR++PAI++ KSGTR+EELL++ L K+WVLR++L
Sbjct: 349 RKLSDKRIFPAIDILKSGTRKEELLVEKSALSKMWVLRRIL 389
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 117/279 (41%), Positives = 149/279 (53%), Gaps = 85/279 (30%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGF-------------------------- 430
LRKQELMFAI K+ + IFG+G LEVLPDGF
Sbjct: 29 LRKQELMFAILKQLAENDHAIFGEGVLEVLPDGFGFLRSPEANYLAGPDDIYVSPSQVRR 88
Query: 431 ----------GFLRS--QGSNYMA--SSDDI-YLSPSQIR-RFN------LHTGILWKGE 468
G +RS +G Y A D + + +P ++R R N L+ K E
Sbjct: 89 FGLRTGDTVEGQIRSPKEGERYFALLKVDKVNFDAPEKVRHRINFDNLTPLYPDEPLKME 148
Query: 469 IRVPKNGERYFALLKIKKVN----------VASPKSGKSIILQHIAHAITTNHSEAIMIV 518
+ + G + I+ V+ VA P++GK+++LQ+IAHAI NH EA +IV
Sbjct: 149 RHLDQEGNKDITNRVIELVSPLGKGQRALIVAPPRTGKTVMLQNIAHAIEENHPEAYLIV 208
Query: 519 MLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSV 551
+LIDERPEEVT+M RSV+GEVI+STFDEPA L
Sbjct: 209 LLIDERPEEVTDMDRSVKGEVISSTFDEPAQRHVQVTEMVLEKAKRLVEHKHDVVILLDS 268
Query: 552 MCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 269 ITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 307
>gi|344924231|ref|ZP_08777692.1| transcription termination factor Rho [Candidatus Odyssella
thessalonicensis L13]
Length = 423
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/344 (70%), Positives = 298/344 (86%), Gaps = 5/344 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFGDG +E+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR PK GE
Sbjct: 49 IFGDGVVEILQDGFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRAPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESK----ENITGRIIDL 123
RYFALLK+ K+N E+PE K R FDNLTPL+P + + LE + K +++ R+IDL
Sbjct: 109 RYFALLKVNKINFEEPENIKYRINFDNLTPLYPDERIKLEMELPPKSGGNNDLSQRVIDL 168
Query: 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR 183
+AP+GKGQR L+VA P++GK+++LQ+IAHAITTNH E +IV+LIDERPEEVT+M RSV+
Sbjct: 169 VAPLGKGQRALVVAPPRTGKTVMLQNIAHAITTNHPEVYLIVLLIDERPEEVTDMARSVK 228
Query: 184 GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKV 243
GEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKV
Sbjct: 229 GEVVSSTFDEPAARHVQVAEMVIEKAKRLVEQKRDVVILLDSITRLARAYNTVVPSSGKV 288
Query: 244 LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVH 303
LTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 289 LTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNAEIV 348
Query: 304 LERRLAEKRVYPAINLNKSGTRREELLIQDD-KLQKIWVLRKLL 346
++R+L++KRV+PAI++NKSGTR+EELL+ D +L K+WVLR++L
Sbjct: 349 MDRKLSDKRVFPAIDINKSGTRKEELLVADKAELTKMWVLRRIL 392
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTNH E +IV+LIDERPEEVT+M RSV+GEV++STFDEPA
Sbjct: 181 VAPPRTGKTVMLQNIAHAITTNHPEVYLIVLLIDERPEEVTDMARSVKGEVVSSTFDEPA 240
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 241 ARHVQVAEMVIEKAKRLVEQKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 300
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 301 PKRFFGAAR 309
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 78/109 (71%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ + +RKQ+L+FAI KK IFGDG +E+L DGFGFLRS +NY+ DDI
Sbjct: 20 ELEIENASAMRKQDLVFAILKKLADKDVAIFGDGVVEILQDGFGFLRSPEANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
Y+SPSQ+RRF L TG +G+IR PK GERYFALLK+ K+N P++ K
Sbjct: 80 YVSPSQVRRFGLRTGDTVEGQIRAPKEGERYFALLKVNKINFEEPENIK 128
>gi|47779352|gb|AAT38581.1| predicted transcription termination factor Rho [uncultured gamma
proteobacterium eBACHOT4E07]
Length = 425
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/346 (68%), Positives = 296/346 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K G I+G G LE+L DGFGFLRS +Y A DDIY+SPSQIR+F L GD VEG+I
Sbjct: 42 KASEGTDIYGGGVLEILNDGFGFLRSPQGSYCAGEDDIYVSPSQIRKFGLRKGDSVEGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+++ +NGE+P +KN+ LF+NLTPL P + L+LE+ S E+++ RI
Sbjct: 102 RTPKDKERYFALIQVDTINGEEPAKTKNKILFENLTPLFPTERLMLEQGSGSNEDLSSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAP+GKGQRGL+V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVT+M R
Sbjct: 162 IDLIAPVGKGQRGLIVSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTDMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEP RHVQVA MV+EKAKRLVE KKDV+ILLDSITRL RAYN V PAS
Sbjct: 222 TVKGEVVASTFDEPPTRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNAVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVDSNAL+RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNM
Sbjct: 282 GKILSGGVDSNALERPKRFFGAARNLEEGGSLTIIATALVETGSKMDEVIFEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+HLER++AEKR+YPAIN+ +SGTRRE+LL DD+LQ++W+LRK+L
Sbjct: 342 EIHLERKIAEKRIYPAINVRRSGTRREDLLTSDDELQRMWILRKIL 387
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVT+M R+V+GEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTDMSRTVKGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN V PASGK+L+GGVDSNAL+R
Sbjct: 237 TRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNAVQPASGKILSGGVDSNALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 76/113 (67%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + + RL+KQE++F IFK K G I+G G LE+L DGFGFLRS +Y A DDI
Sbjct: 20 ELGLEDLGRLKKQEIIFRIFKHKASEGTDIYGGGVLEILNDGFGFLRSPQGSYCAGEDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIR+F L G +G+IR PK+ ERYFAL+++ +N P K+ IL
Sbjct: 80 YVSPSQIRKFGLRKGDSVEGKIRTPKDKERYFALIQVDTINGEEPAKTKNKIL 132
>gi|148244589|ref|YP_001219283.1| transcription termination factor Rho [Candidatus Vesicomyosocius
okutanii HA]
gi|146326416|dbj|BAF61559.1| transcription termination factor Rho [Candidatus Vesicomyosocius
okutanii HA]
Length = 420
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/358 (67%), Positives = 296/358 (82%), Gaps = 2/358 (0%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
E + GDG L+VL DG+GFLRS +Y + +DDIY+SP+QIRRFNL TGD V G+IR PK
Sbjct: 47 EEVLGDGVLDVLQDGYGFLRSSDDSYTSGADDIYISPNQIRRFNLSTGDLVAGKIRAPKK 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
GE+YFAL+K+ +VN E P+ +NR F +LTP+HP + + LE E+IT R+IDL+A
Sbjct: 107 GEKYFALIKVSEVNSEDPDNVRNRIPFASLTPIHPNERINLEVGNGGTEDITARVIDLVA 166
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
P GKGQRGLLVA PK+GK++I+Q+IA +I+ NH E +IV+LIDERPEEVTEM R+VRGE
Sbjct: 167 PFGKGQRGLLVAPPKAGKTMIMQNIATSISVNHPECELIVLLIDERPEEVTEMARTVRGE 226
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VIASTFDEPA RHVQVAEMV++K KR E KDVIILLDSITRLARAYNT+ P+SGKVLT
Sbjct: 227 VIASTFDEPAKRHVQVAEMVIQKTKRRSEQGKDVIILLDSITRLARAYNTIAPSSGKVLT 286
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIE GGS+TIIATALI+TGS+MD+VIY+EFKGTGNME+HLE
Sbjct: 287 GGVDANALQRPKRFFGAARNIENGGSITIIATALIDTGSKMDEVIYQEFKGTGNMELHLE 346
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKR 363
+RL+EKR++PAIN+N SGTRREEL+ + +LQKIW+LRK+L+ M + + F I R
Sbjct: 347 KRLSEKRIFPAININASGTRREELITDEKELQKIWILRKILHP--MDTVEAAEFLINR 402
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK++I+Q+IA +I+ NH E +IV+LIDERPEEVTEM R+VRGEVIASTFDEPA
Sbjct: 177 VAPPKAGKTMIMQNIATSISVNHPECELIVLLIDERPEEVTEMARTVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNT+ P+SGKVLTGGVD+NALQR
Sbjct: 237 KRHVQVAEMVIQKTKRRSEQGKDVIILLDSITRLARAYNTIAPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 72/104 (69%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L ++ R +KQ L+F I K K E + GDG L+VL DG+GFLRS +Y + +DDIY
Sbjct: 21 LGAENISRAKKQTLIFIILKAKAANDEEVLGDGVLDVLQDGYGFLRSSDDSYTSGADDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
+SP+QIRRFNL TG L G+IR PK GE+YFAL+K+ +VN P
Sbjct: 81 ISPNQIRRFNLSTGDLVAGKIRAPKKGEKYFALIKVSEVNSEDP 124
>gi|52843128|ref|YP_096927.1| transcription termination factor Rho [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778814|ref|YP_005187256.1| transcription termination factor Rho [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52630239|gb|AAU28980.1| transcription termination factor Rho [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364509632|gb|AEW53156.1| transcription termination factor Rho [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 423
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/345 (68%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I GDG LEVL DGFGFLRS +Y+A DDIY+SPSQIRRF L +GD + G+IR PK
Sbjct: 49 GEDIHGDGVLEVLTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFGLRSGDTISGKIRPPK 108
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ +K + LF+NLTPL + L++E+ S E++T R++DL
Sbjct: 109 DSERYFALLKVDQINYDTPDSAKRKILFENLTPLFATERLVMEQGNGSTEDLTARVVDLC 168
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP G+GQRGL+V+ PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEMQRSV+G
Sbjct: 169 APFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNYPECYLIVLLIDERPEEVTEMQRSVKG 228
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+PASGKVL
Sbjct: 229 EVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPASGKVL 288
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKR +GAARNIEEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+HL
Sbjct: 289 TGGVDANALQRPKRLYGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEIHL 348
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R +AE+RV+PAIN+N+SGTRRE+LL+ ++LQ+ W+LRK+L S+
Sbjct: 349 SRNIAERRVFPAININRSGTRREDLLLSPEELQRTWILRKILQSM 393
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 145/286 (50%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF------GFLRSQGSN 439
++ V + R+RKQ+++FAI K GE I GDG LEVL D GF +L
Sbjct: 23 EMGVENTSRMRKQDIIFAILKAHALKGEDIHGDGVLEVLTDGFGFLRSADGSYLAGPDDI 82
Query: 440 YMASS--------------------------------DDI-YLSPSQIRRFNLHTGI--L 464
Y++ S D I Y +P +R L + L
Sbjct: 83 YVSPSQIRRFGLRSGDTISGKIRPPKDSERYFALLKVDQINYDTPDSAKRKILFENLTPL 142
Query: 465 WKGEIRVPKNGERYFALLKIKKVN-------------VASPKSGKSIILQHIAHAITTNH 511
+ E V + G L + V+ V+ PK+GK+++LQ+IA +I N+
Sbjct: 143 FATERLVMEQGNGSTEDLTARVVDLCAPFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNY 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NALQRPKR +GAAR
Sbjct: 263 VVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRLYGAAR 308
>gi|403049666|ref|ZP_10904150.1| transcription termination factor Rho [SAR86 cluster bacterium
SAR86D]
Length = 431
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/346 (69%), Positives = 297/346 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K G I+G G LE+L DGFGFLRS +Y A DDIY+SPSQIR+F L GD V G+I
Sbjct: 42 KASEGVDIYGGGVLEILNDGFGFLRSPEGSYCAGEDDIYVSPSQIRKFGLRKGDSVAGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+++ +NGE+P +KN+ LF+NLTPL P + L+LE+ S E+++ RI
Sbjct: 102 RTPKDKERYFALIQVDTINGEEPRNTKNKILFENLTPLFPNERLVLEQGSGSNEDLSSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGL+V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVTEM R
Sbjct: 162 IDLIAPIGKGQRGLIVSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTEMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEP RHVQVA MV+EKAKRLVE KKDV+ILLDSITRL RAYN+V PAS
Sbjct: 222 TVKGEVVASTFDEPPSRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVDSNAL+RPKRFFGAARN+EEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGNM
Sbjct: 282 GKILSGGVDSNALERPKRFFGAARNLEEGGSLTILATALVETGSKMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+HLER++AEKR+YPAIN+ +SGTRRE+LLI +D+LQ++WVLRK+L
Sbjct: 342 EIHLERKIAEKRIYPAINIRRSGTRREDLLIAEDELQRMWVLRKIL 387
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVTEM R+V+GEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTEMSRTVKGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN+V PASGK+L+GGVDSNAL+R
Sbjct: 237 SRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPASGKILSGGVDSNALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 77/113 (68%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + V RL+KQE++F IFK K G I+G G LE+L DGFGFLRS +Y A DDI
Sbjct: 20 ELGLEDVGRLKKQEIIFRIFKHKASEGVDIYGGGVLEILNDGFGFLRSPEGSYCAGEDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIR+F L G G+IR PK+ ERYFAL+++ +N P++ K+ IL
Sbjct: 80 YVSPSQIRKFGLRKGDSVAGKIRTPKDKERYFALIQVDTINGEEPRNTKNKIL 132
>gi|54295773|ref|YP_128188.1| transcription termination factor Rho [Legionella pneumophila str.
Lens]
gi|54298935|ref|YP_125304.1| transcription termination factor Rho [Legionella pneumophila str.
Paris]
gi|148361266|ref|YP_001252473.1| hypothetical protein LPC_3240 [Legionella pneumophila str. Corby]
gi|296108605|ref|YP_003620306.1| transcription termination factor Rho [Legionella pneumophila
2300/99 Alcoy]
gi|397665549|ref|YP_006507087.1| transcription termination factor [Legionella pneumophila subsp.
pneumophila]
gi|397668615|ref|YP_006510152.1| transcription termination factor [Legionella pneumophila subsp.
pneumophila]
gi|53752720|emb|CAH14155.1| transcription termination factor Rho [Legionella pneumophila str.
Paris]
gi|53755605|emb|CAH17107.1| transcription termination factor Rho [Legionella pneumophila str.
Lens]
gi|148283039|gb|ABQ57127.1| hypothetical protein LPC_3240 [Legionella pneumophila str. Corby]
gi|295650507|gb|ADG26354.1| transcription termination factor Rho [Legionella pneumophila
2300/99 Alcoy]
gi|307611822|emb|CBX01535.1| transcription termination factor Rho [Legionella pneumophila 130b]
gi|395128960|emb|CCD07181.1| transcription termination factor [Legionella pneumophila subsp.
pneumophila]
gi|395132026|emb|CCD10319.1| transcription termination factor [Legionella pneumophila subsp.
pneumophila]
Length = 420
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/345 (68%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I GDG LEVL DGFGFLRS +Y+A DDIY+SPSQIRRF L +GD + G+IR PK
Sbjct: 46 GEDIHGDGVLEVLTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFGLRSGDTISGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ +K + LF+NLTPL + L++E+ S E++T R++DL
Sbjct: 106 DSERYFALLKVDQINYDTPDSAKRKILFENLTPLFATERLVMEQGNGSTEDLTARVVDLC 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP G+GQRGL+V+ PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEMQRSV+G
Sbjct: 166 APFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNYPECYLIVLLIDERPEEVTEMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+PASGKVL
Sbjct: 226 EVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPASGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKR +GAARNIEEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+HL
Sbjct: 286 TGGVDANALQRPKRLYGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEIHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R +AE+RV+PAIN+N+SGTRRE+LL+ ++LQ+ W+LRK+L S+
Sbjct: 346 SRNIAERRVFPAININRSGTRREDLLLSPEELQRTWILRKILQSM 390
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 148/286 (51%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNY------- 440
++ V + R+RKQ+++FAI K GE I GDG LEVL DGFGFLRS +Y
Sbjct: 20 EMGVENTSRMRKQDIIFAILKAHALKGEDIHGDGVLEVLTDGFGFLRSADGSYLAGPDDI 79
Query: 441 -----------MASSDDI-----------------------YLSPSQIRRFNLHTGI--L 464
+ S D I Y +P +R L + L
Sbjct: 80 YVSPSQIRRFGLRSGDTISGKIRPPKDSERYFALLKVDQINYDTPDSAKRKILFENLTPL 139
Query: 465 WKGEIRVPKNGERYFALLKIKKVN-------------VASPKSGKSIILQHIAHAITTNH 511
+ E V + G L + V+ V+ PK+GK+++LQ+IA +I N+
Sbjct: 140 FATERLVMEQGNGSTEDLTARVVDLCAPFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNY 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 200 PECYLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NALQRPKR +GAAR
Sbjct: 260 VVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRLYGAAR 305
>gi|94970256|ref|YP_592304.1| transcription termination factor Rho [Candidatus Koribacter
versatilis Ellin345]
gi|94552306|gb|ABF42230.1| transcription termination factor Rho [Candidatus Koribacter
versatilis Ellin345]
Length = 415
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/343 (68%), Positives = 301/343 (87%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LE+LPDG+GFLRS NY+ DDIY+SPSQIR+F+L TGD + G++R P GE
Sbjct: 49 IFAEGVLEILPDGYGFLRSPDYNYLPGPDDIYVSPSQIRKFDLKTGDTISGQVRPPHEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
+YFAL+KI+ VN E P+ ++N+ LFDNLTPL+P++ + LE ++NI+ R++DL+ P+
Sbjct: 109 KYFALVKIEAVNFESPDEARNKILFDNLTPLYPQERIKLE---TVRDNISARVMDLLTPV 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ++A++ITTNH E ++IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLLQNLANSITTNHPEIVLIVLLIDERPEEVTDMQRSVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNT++P SGKVL+GG
Sbjct: 226 SSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPPSGKVLSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVI+EEFKGTGNME+ L+R+
Sbjct: 286 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIFEEFKGTGNMEIILDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LA+KR +PAI++ +SGTR+EELL+ + LQ+IW+LR++L L+
Sbjct: 346 LADKRTFPAIDIQRSGTRKEELLLAKEDLQRIWILRRVLNPLS 388
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 166/282 (58%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ LRKQ+L+F I + +++ IF +G LE+LPDG+GFLRS NY+ DDIY
Sbjct: 21 LDLPGASGLRKQDLIFKILQAQSEKEGHIFAEGVLEILPDGYGFLRSPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIR+F+L TG G++R P GE+YFAL+KI+ VN
Sbjct: 81 VSPSQIRKFDLKTGDTISGQVRPPHEGEKYFALVKIEAVNFESPDEARNKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+++LQ++A++ITTNH E +
Sbjct: 141 PQERIKLETVRDNISARVMDLLTPVGKGQRGLIVAPPRTGKTMLLQNLANSITTNHPEIV 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT++P SGKVL+GGVDSNALQRPKRFFGAAR
Sbjct: 261 LDSITRLARAYNTIVPPSGKVLSGGVDSNALQRPKRFFGAAR 302
>gi|189424091|ref|YP_001951268.1| transcription termination factor Rho [Geobacter lovleyi SZ]
gi|189420350|gb|ACD94748.1| transcription termination factor Rho [Geobacter lovleyi SZ]
Length = 415
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/344 (68%), Positives = 298/344 (86%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LE+L DGFGFLR+ NY+ DDIY+SPSQIRRFNL TGD V G+IR PK GE
Sbjct: 49 IYGEGVLEILQDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ +N E PE +++TLFDNLTPL+P++ L LE + +N R+++L++PI
Sbjct: 109 RYFALLKVETINFETPEAGRDKTLFDNLTPLYPEEKLKLET---APDNYGMRVMELVSPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV GEV+
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIAANHPEVYLIVLLIDERPEEVTDMQRSVNGEVV 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P SGK+LTGG
Sbjct: 226 SSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVLPPSGKILTGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQ+PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNMEVHL+RR
Sbjct: 286 VDANALQKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEVHLDRR 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELLI+ L +IW+LRK+L+ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLIERTMLNRIWILRKILHPMNV 389
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/283 (45%), Positives = 163/283 (57%), Gaps = 80/283 (28%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL + LRKQ+L+FAI +T+ I+G+G LE+L DGFGFLR+ NY+ DDI
Sbjct: 20 DLSIEGASGLRKQDLIFAILNAQTEQNGSIYGEGVLEILQDGFGFLRAPDYNYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------- 488
Y+SPSQIRRFNL TG G+IR PK GERYFALLK++ +N
Sbjct: 80 YVSPSQIRRFNLRTGDTVSGQIRPPKEGERYFALLKVETINFETPEAGRDKTLFDNLTPL 139
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IA++I NH E
Sbjct: 140 YPEEKLKLETAPDNYGMRVMELVSPIGKGQRGLIVAPPRTGKTMLIQNIANSIAANHPEV 199
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV GEV++STFDEPA
Sbjct: 200 YLIVLLIDERPEEVTDMQRSVNGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVI 259
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NALQ+PKRFFGAAR
Sbjct: 260 LLDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGAAR 302
>gi|402548897|ref|ZP_10845750.1| transcription termination factor Rho [SAR86 cluster bacterium
SAR86C]
gi|9971934|gb|AAG10496.1|AF279106_58 predicted transcription termination factor Rho [uncultured marine
gamma proteobacterium EBAC31A08]
Length = 425
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/346 (68%), Positives = 297/346 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K G I+G G LE+L DGFGFLRS +Y A DDIY+SPSQIR+F+L GD V G+I
Sbjct: 42 KASEGVDIYGGGVLEILNDGFGFLRSPEGSYCAGEDDIYVSPSQIRKFSLRKGDSVAGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+++ +NGE+P +KN+ LF+NLTPL P + L+LE+ S E+++ RI
Sbjct: 102 RTPKDKERYFALIQVDTINGEEPRKTKNKILFENLTPLFPNERLILEQGTGSNEDLSSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGL+V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVTEM R
Sbjct: 162 IDLIAPIGKGQRGLIVSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTEMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEP RHVQVA MV+EKAKRLVE KKDV+ILLDSITRL RAYN+V PAS
Sbjct: 222 TVKGEVVASTFDEPPTRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVDSNAL+RPKRFFGAARN+EEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGNM
Sbjct: 282 GKILSGGVDSNALERPKRFFGAARNLEEGGSLTILATALVETGSKMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+HLER++AEKR+YPAIN+ +SGTRRE+LL +D+LQ++WVLRK+L
Sbjct: 342 EIHLERKIAEKRIYPAINIRRSGTRREDLLTAEDELQRMWVLRKIL 387
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVTEM R+V+GEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTEMSRTVKGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN+V PASGK+L+GGVDSNAL+R
Sbjct: 237 TRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPASGKILSGGVDSNALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 77/113 (68%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + V RL+KQE++F IFK K G I+G G LE+L DGFGFLRS +Y A DDI
Sbjct: 20 ELGLEDVGRLKKQEIIFRIFKHKASEGVDIYGGGVLEILNDGFGFLRSPEGSYCAGEDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIR+F+L G G+IR PK+ ERYFAL+++ +N P+ K+ IL
Sbjct: 80 YVSPSQIRKFSLRKGDSVAGKIRTPKDKERYFALIQVDTINGEEPRKTKNKIL 132
>gi|294085210|ref|YP_003551970.1| transcription termination factor [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664785|gb|ADE39886.1| Transcription termination factor [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 423
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/343 (70%), Positives = 295/343 (86%), Gaps = 1/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G G LEVL DGFGFLR+ SNY+ DDIY+SPSQ+RRF+L TGD VEGEIR PK+GE
Sbjct: 53 IYGSGVLEVLSDGFGFLRAPESNYLPGPDDIYVSPSQVRRFSLRTGDTVEGEIRAPKDGE 112
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIE-SKENITGRIIDLIAP 126
RYFALLKI+ +N E+P + R FDNLTPL+P++ L LE + K++ T R+IDL+AP
Sbjct: 113 RYFALLKIQTINFEEPSAVRQRINFDNLTPLYPEEKLTLELPFDPDKKDNTPRVIDLVAP 172
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
+GKGQRGL+VA P++GK+++LQ IAHAI+ NH E +IV+LIDERPEEVT+MQRSV+GEV
Sbjct: 173 MGKGQRGLIVAPPRTGKTMMLQSIAHAISENHPEVYLIVLLIDERPEEVTDMQRSVKGEV 232
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEPA RHVQV EMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTG
Sbjct: 233 ISSTFDEPASRHVQVTEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTG 292
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGN EV L+R
Sbjct: 293 GVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEVILDR 352
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+L++KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 353 KLSDKRTFPAIDITKSGTRKEELLVDKGTLAKMWVLRRILMQM 395
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IAHAI+ NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 182 VAPPRTGKTMMLQSIAHAISENHPEVYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPA 241
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 242 SRHVQVTEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 301
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 302 PKRFFGAAR 310
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ + LRKQ++MFAI K+ I+G G LEVL DGFGFLR+ SNY+ DDI
Sbjct: 24 ELEIENASTLRKQDMMFAILKQLADNDVSIYGSGVLEVLSDGFGFLRAPESNYLPGPDDI 83
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+SPSQ+RRF+L TG +GEIR PK+GERYFALLKI+ +N P +
Sbjct: 84 YVSPSQVRRFSLRTGDTVEGEIRAPKDGERYFALLKIQTINFEEPSA 130
>gi|269467940|gb|EEZ79675.1| transcription termination factor [uncultured SUP05 cluster
bacterium]
Length = 420
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/363 (66%), Positives = 300/363 (82%), Gaps = 2/363 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K+ E + GDG L+V+ +G+GFLRS +Y++ DD+Y+SP+QIRRFNL TGD V G+I
Sbjct: 42 KSANDEEVLGDGVLDVMQEGYGFLRSSDDSYVSGPDDMYVSPNQIRRFNLSTGDLVAGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GE+YFAL+++ +VNGE PE +NR F +LTP+HP + L LE E+IT R+
Sbjct: 102 RAPKKGEKYFALIQVSEVNGENPENIRNRIPFASLTPIHPDERLGLEIGNGGTEDITARV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+AP GKGQRGLLVA PK+GK++I+Q+IA +I+ NH E +IV+LIDERPEEVTEM+R
Sbjct: 162 IDLVAPFGKGQRGLLVAPPKAGKTMIMQNIASSISRNHPECELIVLLIDERPEEVTEMER 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEVIASTFDE A RHVQVAEMV++KAKR E KDVIILLDSITRLARAYNTV P+S
Sbjct: 222 TVRGEVIASTFDESAKRHVQVAEMVIQKAKRRAEQGKDVIILLDSITRLARAYNTVAPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIE GGS+TIIATALI+TGS+MD+VIY+EFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIENGGSITIIATALIDTGSKMDEVIYQEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFF 360
E+HLERRL+EKR++PAIN+N SGTRREEL+ + +LQK+W+LRK+L+ M + + F
Sbjct: 342 ELHLERRLSEKRIFPAININASGTRREELITDEKELQKMWILRKILHP--MDTVEAAEFL 399
Query: 361 IKR 363
I R
Sbjct: 400 IDR 402
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK++I+Q+IA +I+ NH E +IV+LIDERPEEVTEM+R+VRGEVIASTFDE A
Sbjct: 177 VAPPKAGKTMIMQNIASSISRNHPECELIVLLIDERPEEVTEMERTVRGEVIASTFDESA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD+NALQR
Sbjct: 237 KRHVQVAEMVIQKAKRRAEQGKDVIILLDSITRLARAYNTVAPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 78/106 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V ++ R +KQ L+FAI K K+ E + GDG L+V+ +G+GFLRS +Y++ DD+Y
Sbjct: 21 LGVENISRAKKQTLIFAILKAKSANDEEVLGDGVLDVMQEGYGFLRSSDDSYVSGPDDMY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+SP+QIRRFNL TG L G+IR PK GE+YFAL+++ +VN +P++
Sbjct: 81 VSPNQIRRFNLSTGDLVAGKIRAPKKGEKYFALIQVSEVNGENPEN 126
>gi|374620711|ref|ZP_09693245.1| transcription termination factor Rho [gamma proteobacterium HIMB55]
gi|374303938|gb|EHQ58122.1| transcription termination factor Rho [gamma proteobacterium HIMB55]
Length = 536
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 250/350 (71%), Positives = 303/350 (86%), Gaps = 3/350 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+++A DDIY+SPSQIRRFNL TGD V G IR
Sbjct: 158 KSGEDIFGDGVLEILSDGFGFLRSADSSFLAGPDDIYVSPSQIRRFNLRTGDTVTGMIRP 217
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFALLK+ +VN E PE +K + LF+NLTPL P + L LE+ S E++TGRIID
Sbjct: 218 PKDSERYFALLKVSEVNFESPETAKAKILFENLTPLFPDQRLTLEKGNGSTEDLTGRIID 277
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGLLVA PK+GK+I++Q +A AI +N+ E +IV+LIDERPEEVTEMQRSV
Sbjct: 278 LCSPIGKGQRGLLVAPPKAGKTIMMQSVAQAIISNNPECYIIVLLIDERPEEVTEMQRSV 337
Query: 183 --RG-EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RG EV+ASTFDEP RHVQVA+MV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+
Sbjct: 338 GARGAEVVASTFDEPPARHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPS 397
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATAL ETGS+MD+VIYEEFKGTGN
Sbjct: 398 SGKVLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALTETGSKMDEVIYEEFKGTGN 457
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
ME+HL+R+++EKRVYPAIN+ +SGTRREELL +++LQ++W+LRKLL+ +
Sbjct: 458 MELHLDRKISEKRVYPAINIRRSGTRREELLTGEEELQRMWILRKLLHGM 507
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 137/309 (44%), Positives = 174/309 (56%), Gaps = 96/309 (31%)
Query: 378 PLVLAETQT------IDLE----VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLP 427
P+ L E +T ID+ + ++ R RKQ+++F++ K+ K GE IFGDG LE+L
Sbjct: 114 PMSLTELKTKSTQELIDMAAEMGIENMARSRKQDIIFSLLKRHAKSGEDIFGDGVLEILS 173
Query: 428 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL------ 481
DGFGFLRS S+++A DDIY+SPSQIRRFNL TG G IR PK+ ERYFAL
Sbjct: 174 DGFGFLRSADSSFLAGPDDIYVSPSQIRRFNLRTGDTVTGMIRPPKDSERYFALLKVSEV 233
Query: 482 -------------------------LKIKKVN-------------------------VAS 491
L ++K N VA
Sbjct: 234 NFESPETAKAKILFENLTPLFPDQRLTLEKGNGSTEDLTGRIIDLCSPIGKGQRGLLVAP 293
Query: 492 PKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV--RG-EVIASTFDEPA 548
PK+GK+I++Q +A AI +N+ E +IV+LIDERPEEVTEMQRSV RG EV+ASTFDEP
Sbjct: 294 PKAGKTIMMQSVAQAIISNNPECYIIVLLIDERPEEVTEMQRSVGARGAEVVASTFDEPP 353
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD++AL+R
Sbjct: 354 ARHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALER 413
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 414 PKRFFGAAR 422
>gi|381167621|ref|ZP_09876828.1| Transcription termination factor Rho [Phaeospirillum molischianum
DSM 120]
gi|380683375|emb|CCG41640.1| Transcription termination factor Rho [Phaeospirillum molischianum
DSM 120]
Length = 418
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/342 (69%), Positives = 296/342 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR PK+GE
Sbjct: 49 IYGDGVLEILQDGFGFLRSPEANYLPGPDDIYVSPSQMRRFGLRTGDTVEGQIRAPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE ++R FDNLTPL+P + L LE + +K+++T R+IDL+API
Sbjct: 109 RYFALLKVNSINFEPPENVRHRINFDNLTPLYPDEKLRLEIDDPTKKDLTTRVIDLVAPI 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ++AHAI+ NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 169 GKGQRALIVAPPRTGKTVMLQNMAHAISANHPEVYLIVLLIDERPEEVTDMARSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPASRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L++KR +PAI++ KSGTR+EELL++ L K+WVLR++L +
Sbjct: 349 LSDKRTFPAIDITKSGTRKEELLVEKGTLSKMWVLRRILMPM 390
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ++AHAI+ NH E +IV+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 177 VAPPRTGKTVMLQNMAHAISANHPEVYLIVLLIDERPEEVTDMARSVKGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 77/107 (71%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV + LRKQ++MFAI K+ I+GDG LE+L DGFGFLRS +NY+ DDI
Sbjct: 20 ELEVENASTLRKQDMMFAILKQLADNDTPIYGDGVLEILQDGFGFLRSPEANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+SPSQ+RRF L TG +G+IR PK+GERYFALLK+ +N P++
Sbjct: 80 YVSPSQMRRFGLRTGDTVEGQIRAPKDGERYFALLKVNSINFEPPEN 126
>gi|119713320|gb|ABL97384.1| transcription termination factor Rho [uncultured marine bacterium
EB80_02D08]
Length = 425
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/346 (68%), Positives = 297/346 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K G I+G G LE+L DGFGFLRS +Y A DDIY+SPSQIR+F+L GD V G+I
Sbjct: 42 KASEGVDIYGGGVLEILNDGFGFLRSPEGSYCAGEDDIYVSPSQIRKFSLRKGDSVAGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+++ +NGE+P +KN+ LF+NLTPL P + L+LE+ S E+++ RI
Sbjct: 102 RTPKDKERYFALIQVDTINGEEPRNTKNKILFENLTPLFPNERLILEQGSGSNEDLSSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLIAPIGKGQRGL+V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVTEM R
Sbjct: 162 IDLIAPIGKGQRGLIVSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTEMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V+GEV+ASTFDEP RHVQVA MV+EKAKRLVE KKDV+ILLDSITRL RAYN+V PAS
Sbjct: 222 TVKGEVVASTFDEPPTRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVDSNAL+RPKRFFGAARN+EEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGNM
Sbjct: 282 GKILSGGVDSNALERPKRFFGAARNLEEGGSLTILATALVETGSKMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+HLER++AEKR+YPAIN+ +SGTRRE+LL +D+LQ++WVLRK+L
Sbjct: 342 EIHLERKIAEKRIYPAINIRRSGTRREDLLTAEDELQRMWVLRKIL 387
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ IAH+I +N+ E +IV+LIDERPEEVTEM R+V+GEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQSIAHSIKSNNPEVELIVLLIDERPEEVTEMSRTVKGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN+V PASGK+L+GGVDSNAL+R
Sbjct: 237 TRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPASGKILSGGVDSNALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 78/113 (69%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + V RL+KQE++F IFK K G I+G G LE+L DGFGFLRS +Y A DDI
Sbjct: 20 ELGLEDVGRLKKQEIIFRIFKHKASEGVDIYGGGVLEILNDGFGFLRSPEGSYCAGEDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIR+F+L G G+IR PK+ ERYFAL+++ +N P++ K+ IL
Sbjct: 80 YVSPSQIRKFSLRKGDSVAGKIRTPKDKERYFALIQVDTINGEEPRNTKNKIL 132
>gi|270158326|ref|ZP_06186983.1| transcription termination factor Rho [Legionella longbeachae
D-4968]
gi|289163428|ref|YP_003453566.1| transcription termination factor Rho [Legionella longbeachae
NSW150]
gi|269990351|gb|EEZ96605.1| transcription termination factor Rho [Legionella longbeachae
D-4968]
gi|288856601|emb|CBJ10408.1| transcription termination factor Rho [Legionella longbeachae
NSW150]
Length = 420
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/345 (68%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I GDG LEVL DGFGFLRS +Y+A DDIY+SPSQIRRF L +GD + G+IR PK
Sbjct: 46 GEDIHGDGVLEVLTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFGLRSGDTISGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ +K + LF+NLTPL + L++E+ S E++T R++DL
Sbjct: 106 DNERYFALLKVDEINYDSPDSAKRKILFENLTPLFATQRLVMEQGNGSTEDLTARVVDLC 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP G+GQRGL+V+ PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEMQRSV+G
Sbjct: 166 APFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNYPECYLIVLLIDERPEEVTEMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKR +GAARNIEEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+HL
Sbjct: 286 TGGVDANALQRPKRLYGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEIHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R +AE+RV+PAIN+N+SGTRRE+LL+ + LQ+ W+LRK+L S+
Sbjct: 346 SRNIAERRVFPAININRSGTRREDLLLSPEDLQRTWILRKILQSM 390
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 144/283 (50%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF------GFLRSQGSNYMA 442
V + R+RKQE++FAI K GE I GDG LEVL D GF +L Y++
Sbjct: 23 VENPSRMRKQEIIFAILKAHALKGEDIHGDGVLEVLTDGFGFLRSADGSYLAGPDDIYVS 82
Query: 443 SS--------------------------------DDI-YLSPSQIRRFNLHTGI--LWKG 467
S D+I Y SP +R L + L+
Sbjct: 83 PSQIRRFGLRSGDTISGKIRPPKDNERYFALLKVDEINYDSPDSAKRKILFENLTPLFAT 142
Query: 468 EIRVPKNGERYFALLKIKKVN-------------VASPKSGKSIILQHIAHAITTNHSEA 514
+ V + G L + V+ V+ PK+GK+++LQ+IA +I N+ E
Sbjct: 143 QRLVMEQGNGSTEDLTARVVDLCAPFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNYPEC 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 203 YLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NALQRPKR +GAAR
Sbjct: 263 LLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRLYGAAR 305
>gi|429211346|ref|ZP_19202512.1| hypothetical protein PM1_01248 [Pseudomonas sp. M1]
gi|428158760|gb|EKX05307.1| hypothetical protein PM1_01248 [Pseudomonas sp. M1]
Length = 420
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P K L +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPTKRLTMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATALIETGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALIETGSKMDEVIYEEFKGTGNSEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR++EKRV+PAIN+N+SGTRREELL +++LQ++W+LRK+L+ +
Sbjct: 344 ILDRRISEKRVFPAININRSGTRREELLTGEEELQRMWILRKILHPM 390
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>gi|225874067|ref|YP_002755526.1| transcription termination factor Rho [Acidobacterium capsulatum
ATCC 51196]
gi|225793779|gb|ACO33869.1| transcription termination factor Rho [Acidobacterium capsulatum
ATCC 51196]
Length = 416
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/343 (68%), Positives = 298/343 (86%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LE+LPDG+GFLRS NY+ DDIY+SPSQIR+F+L TGD + G +R P GE
Sbjct: 49 IFAEGVLEILPDGYGFLRSPDYNYLPGPDDIYVSPSQIRKFDLKTGDTISGNVRPPHEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
+YFAL+KI+ +N E PE ++N+ LFDNLTPL+P++ + +E ++NI+GR++DL+ PI
Sbjct: 109 KYFALVKIEAINFESPEETRNKILFDNLTPLYPEERIKME---TVRDNISGRVMDLLTPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ IA++IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLLQSIANSITANHPEVALIVLLIDERPEEVTDMQRSVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNT++P SGKVL+GG
Sbjct: 226 SSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPPSGKVLSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGNMEV L+R+
Sbjct: 286 VDSNALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEVILDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L +KRV+PAI++ +SGTR+EELLI + LQ+IWVLRK+L L+
Sbjct: 346 LVDKRVFPAIDIQRSGTRKEELLIPKEDLQRIWVLRKVLNPLS 388
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 162/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ LRKQ+L+F I + +++ IF +G LE+LPDG+GFLRS NY+ DDIY
Sbjct: 21 LDIPGASGLRKQDLIFKILQAQSEKEGHIFAEGVLEILPDGYGFLRSPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIR+F+L TG G +R P GE+YFAL+KI+ +N
Sbjct: 81 VSPSQIRKFDLKTGDTISGNVRPPHEGEKYFALVKIEAINFESPEETRNKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+++LQ IA++IT NH E
Sbjct: 141 PEERIKMETVRDNISGRVMDLLTPIGKGQRGLIVAPPRTGKTMLLQSIANSITANHPEVA 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT++P SGKVL+GGVDSNALQRPKRFFGAAR
Sbjct: 261 LDSITRLARAYNTIVPPSGKVLSGGVDSNALQRPKRFFGAAR 302
>gi|388454975|ref|ZP_10137270.1| transcription termination factor Rho [Fluoribacter dumoffii Tex-KL]
Length = 420
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/345 (68%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I GDG LEVL DGFGFLRS +Y+A DDIY+SPSQIRRF L +GD + G+IR PK
Sbjct: 46 GEDIHGDGVLEVLTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFGLRSGDTISGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ +K + LF+NLTPL + L++E+ S E++T R++DL
Sbjct: 106 DSERYFALLKVDEINYDSPDSAKRKILFENLTPLFATERLVMEQGNGSTEDLTARVVDLC 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP G+GQRGL+V+ PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEMQRSV+G
Sbjct: 166 APFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNYPECYLIVLLIDERPEEVTEMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKR +GAARNIEEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+HL
Sbjct: 286 TGGVDANALQRPKRLYGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEIHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R +AE+RV+PAIN+N+SGTRRE+LL+ + LQ+ W+LRK+L S+
Sbjct: 346 SRNIAERRVFPAININRSGTRREDLLLSPEDLQRTWILRKILQSM 390
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 147/283 (51%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI--- 447
V + R+RKQE++FAI K GE I GDG LEVL DGFGFLRS +Y+A DDI
Sbjct: 23 VENPSRMRKQEIIFAILKAHALKGEDIHGDGVLEVLTDGFGFLRSADGSYLAGPDDIYVS 82
Query: 448 --------------------------------------YLSPSQIRRFNLHTGI--LWKG 467
Y SP +R L + L+
Sbjct: 83 PSQIRRFGLRSGDTISGKIRPPKDSERYFALLKVDEINYDSPDSAKRKILFENLTPLFAT 142
Query: 468 EIRVPKNGERYFALLKIKKVN-------------VASPKSGKSIILQHIAHAITTNHSEA 514
E V + G L + V+ V+ PK+GK+++LQ+IA +I N+ E
Sbjct: 143 ERLVMEQGNGSTEDLTARVVDLCAPFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNYPEC 202
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 203 YLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVI 262
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NALQRPKR +GAAR
Sbjct: 263 LLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRLYGAAR 305
>gi|144899668|emb|CAM76532.1| transcription termination factor [Magnetospirillum gryphiswaldense
MSR-1]
Length = 428
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/346 (68%), Positives = 298/346 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LEVL DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR PK+GE
Sbjct: 59 IYGEGVLEVLQDGFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKDGE 118
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE ++R FDNLTPL+P + L LE + +K+++T R+IDLIAP+
Sbjct: 119 RYFALLKVNTINFEPPENVRHRINFDNLTPLYPNEKLRLEVDDPTKKDLTTRVIDLIAPV 178
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ++AHAI+ NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 179 GKGQRALIVAPPRTGKTVMLQNMAHAISANHPEVYLIVLLIDERPEEVTDMARSVKGEVI 238
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDS+TRLARAYNTV+P+SGKVLTGG
Sbjct: 239 SSTFDEPAVRHVQVTEMVLEKAKRLVEHKRDVVILLDSVTRLARAYNTVVPSSGKVLTGG 298
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 299 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 358
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
L++KR +PAI++ KSGTR+EELL+ +L K+WVLR++L + ++
Sbjct: 359 LSDKRTFPAIDITKSGTRKEELLVDKGQLSKMWVLRRILMPMGVSD 404
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ++AHAI+ NH E +IV+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 187 VAPPRTGKTVMLQNMAHAISANHPEVYLIVLLIDERPEEVTDMARSVKGEVISSTFDEPA 246
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 247 VRHVQVTEMVLEKAKRLVEHKRDVVILLDSVTRLARAYNTVVPSSGKVLTGGVDANALQR 306
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 307 PKRFFGAAR 315
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 87/130 (66%), Gaps = 2/130 (1%)
Query: 365 IPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLE 424
IP+ + LK +LA + +L++ + LRKQ++MFAI K+ I+G+G LE
Sbjct: 9 IPMHLSELKKKTPAELLAYAE--ELQIENASTLRKQDMMFAILKQLADNDTPIYGEGVLE 66
Query: 425 VLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKI 484
VL DGFGFLRS +NY+ DDIY+SPSQ+RRF L TG +G+IR PK+GERYFALLK+
Sbjct: 67 VLQDGFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKDGERYFALLKV 126
Query: 485 KKVNVASPKS 494
+N P++
Sbjct: 127 NTINFEPPEN 136
>gi|116749146|ref|YP_845833.1| transcription termination factor Rho [Syntrophobacter fumaroxidans
MPOB]
gi|116698210|gb|ABK17398.1| transcription termination factor Rho [Syntrophobacter fumaroxidans
MPOB]
Length = 437
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 233/343 (67%), Positives = 297/343 (86%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LE+LPDGFGFLRSQ NY+ DDIY+SPSQIRRFNL TGD V G+IR PK+ E
Sbjct: 71 IYGEGVLEILPDGFGFLRSQNYNYLPGPDDIYVSPSQIRRFNLRTGDSVSGQIRPPKDNE 130
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E P++++++ LFDNLTPL+P + + LE +N++ R++DL+ PI
Sbjct: 131 RYFALLKVEAVNYEDPDVARDKILFDNLTPLYPDRRVRLE---SIADNLSTRVMDLLTPI 187
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
G GQRGL+VA P++GK+++LQ+IA+A+T NH EA +IV+LIDERPEEVT+MQR+VR EV+
Sbjct: 188 GFGQRGLIVAQPRTGKTMLLQNIANAVTVNHKEAYLIVLLIDERPEEVTDMQRNVRAEVV 247
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQVAEMV EKAKRLVE K+DV+ILLDSITRLARAYN+V+P SGK+L+GG
Sbjct: 248 SSTFDEPPQRHVQVAEMVSEKAKRLVEHKRDVVILLDSITRLARAYNSVVPPSGKILSGG 307
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
+DSNAL RPKRFFGAARN+E+GGSLTIIATALI+TGSRMD+VI+EEFKGTGNME+ L+R+
Sbjct: 308 LDSNALHRPKRFFGAARNVEQGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIVLDRK 367
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LA++R++PAI++NKSGTR+EELL+ D L +IW+LRKLL L
Sbjct: 368 LADRRIFPAIDINKSGTRKEELLLPSDDLNRIWILRKLLSPLN 410
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 165/282 (58%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + +RKQEL+FA+ + + ++ I+G+G LE+LPDGFGFLRSQ NY+ DDIY
Sbjct: 43 LNIEGASSMRKQELIFALLQAQAEMSGLIYGEGVLEILPDGFGFLRSQNYNYLPGPDDIY 102
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G+IR PK+ ERYFALLK++ VN
Sbjct: 103 VSPSQIRRFNLRTGDSVSGQIRPPKDNERYFALLKVEAVNYEDPDVARDKILFDNLTPLY 162
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+++LQ+IA+A+T NH EA
Sbjct: 163 PDRRVRLESIADNLSTRVMDLLTPIGFGQRGLIVAQPRTGKTMLLQNIANAVTVNHKEAY 222
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQR+VR EV++STFDEP
Sbjct: 223 LIVLLIDERPEEVTDMQRNVRAEVVSSTFDEPPQRHVQVAEMVSEKAKRLVEHKRDVVIL 282
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN+V+P SGK+L+GG+DSNAL RPKRFFGAAR
Sbjct: 283 LDSITRLARAYNSVVPPSGKILSGGLDSNALHRPKRFFGAAR 324
>gi|117923453|ref|YP_864070.1| transcription termination factor Rho [Magnetococcus marinus MC-1]
gi|117607209|gb|ABK42664.1| transcription termination factor Rho [Magnetococcus marinus MC-1]
Length = 421
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 233/343 (67%), Positives = 297/343 (86%), Gaps = 1/343 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
+I+G+G LEVL DGFGFLR+ +NY+ DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 52 QIYGEGVLEVLQDGFGFLRAPDTNYLPGPDDIYVSPSQIRRFGLRTGDVVEGQIRAPKES 111
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ERYFALL+++++N E P ++N+ LFDNLTPL+P + L +E ES N+ R++DLI P
Sbjct: 112 ERYFALLRVERINYEDPLKARNKILFDNLTPLYPDERLKMEIADESS-NLEARVMDLIVP 170
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQRGL+VA P++GK++++Q IAH+I NH + +++V+LIDERPEEVT+M+RSV+GEV
Sbjct: 171 IGKGQRGLIVAQPRTGKTMLMQKIAHSIAENHPDTVLLVLLIDERPEEVTDMKRSVKGEV 230
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV P+SGKVL+G
Sbjct: 231 VSSTFDEPATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVAPSSGKVLSG 290
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
G+D+NALQRPKRFFGAARN+EEGGSLTI+ATAL++TGSRMD+VI+EEFKGTGNMEVHL+R
Sbjct: 291 GIDANALQRPKRFFGAARNVEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNMEVHLDR 350
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+L EKR +PAI++ KSGTR+EELL + D+L K+WVLR++L +
Sbjct: 351 KLVEKRTFPAIDIAKSGTRKEELLTERDELSKLWVLRRILLPM 393
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q IAH+I NH + +++V+LIDERPEEVT+M+RSV+GEV++STFDEPA
Sbjct: 180 VAQPRTGKTMLMQKIAHSIAENHPDTVLLVLLIDERPEEVTDMKRSVKGEVVSSTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVL+GG+D+NALQR
Sbjct: 240 TRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVAPSSGKVLSGGIDANALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 78/104 (75%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
+R+QEL++A+ K +++ +I+G+G LEVL DGFGFLR+ +NY+ DDIY+SPSQIRR
Sbjct: 33 MRRQELIYALLKTESENNGQIYGEGVLEVLQDGFGFLRAPDTNYLPGPDDIYVSPSQIRR 92
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
F L TG + +G+IR PK ERYFALL+++++N P ++ IL
Sbjct: 93 FGLRTGDVVEGQIRAPKESERYFALLRVERINYEDPLKARNKIL 136
>gi|347734804|ref|ZP_08867793.1| Transcription termination factor rho [Azospirillum amazonense Y2]
gi|346922122|gb|EGY02611.1| Transcription termination factor rho [Azospirillum amazonense Y2]
Length = 420
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/348 (68%), Positives = 299/348 (85%), Gaps = 2/348 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LEVL DGFGFLRS SNY+ DDIY+SPSQ+RRF L TGD VEG+IR PK+GE
Sbjct: 49 IFGEGVLEVLQDGFGFLRSPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE--RNIESKENITGRIIDLIA 125
RYFALLK+ +N + P+ ++R FDNLTPL+P++ L LE + +K+++T R+IDL+A
Sbjct: 109 RYFALLKVGSINFDHPDKVRHRINFDNLTPLYPEERLKLEIEDPVRNKKDMTTRVIDLVA 168
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
P+GKGQR L+VA P++GK+++LQ+IAH+I TNH E +IV+LIDERPEEVT+M RSVRGE
Sbjct: 169 PLGKGQRALIVAPPRTGKTVMLQNIAHSIATNHPEVYLIVLLIDERPEEVTDMARSVRGE 228
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VI+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLT
Sbjct: 229 VISSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLT 288
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+
Sbjct: 289 GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLD 348
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
R+L++KRV+PAI++ KSGTR+EELL++ + K+W+LR++L + T
Sbjct: 349 RKLSDKRVFPAIDIQKSGTRKEELLVEKGTMAKMWILRRILNPMGATD 396
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+I TNH E +IV+LIDERPEEVT+M RSVRGEVI+STFDEPA
Sbjct: 179 VAPPRTGKTVMLQNIAHSIATNHPEVYLIVLLIDERPEEVTDMARSVRGEVISSTFDEPA 238
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 239 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 298
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 299 PKRFFGAAR 307
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 76/105 (72%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L++ + LRKQ++MFAI K+ + IFG+G LEVL DGFGFLRS SNY+ DDI
Sbjct: 20 ELQIENAGTLRKQDMMFAILKQLAENDVPIFGEGVLEVLQDGFGFLRSPESNYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
Y+SPSQ+RRF L TG +G+IR PK+GERYFALLK+ +N P
Sbjct: 80 YVSPSQVRRFGLRTGDTVEGQIRSPKDGERYFALLKVGSINFDHP 124
>gi|442771751|gb|AGC72429.1| transcription termination factor Rho [uncultured bacterium
A1Q1_fos_2037]
Length = 445
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/351 (66%), Positives = 298/351 (84%), Gaps = 4/351 (1%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+TK IF +G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRF+L TGD V G++
Sbjct: 73 QTKSSGLIFAEGVLECLPDGFGFLRAPEYNYLPGPDDIYVSPSQIRRFDLRTGDTVSGQV 132
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K++ VN E PE+++N+ FDNLTPL+P + L +E +++ R+
Sbjct: 133 RQPKDGERYFALIKVEAVNFEHPEVARNKIFFDNLTPLYPMERL----KLEVPGDMSSRV 188
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DL+ P+GKGQR L+VA P++GK+++LQ IAH+I NH E +IV+LIDERPEEVT+MQR
Sbjct: 189 MDLVTPMGKGQRALIVAPPRTGKTMLLQSIAHSIAKNHPEVALIVLLIDERPEEVTDMQR 248
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEVI+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV P S
Sbjct: 249 SVQGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVQPPS 308
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GG+D+NAL RPKRFFGAARNIEEGGSLTIIATAL++TGSRMDDVI+EEFKGTGN
Sbjct: 309 GKVLSGGIDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNC 368
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
E+HL+R+L +KR +PA+++NKSGTR+EELL+ +D+L+++WVLRK+L L++
Sbjct: 369 EIHLDRKLVDKRTFPALDINKSGTRKEELLMPEDELRRVWVLRKVLNPLSV 419
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 162/286 (56%), Gaps = 79/286 (27%)
Query: 384 TQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMAS 443
T DL V LRKQEL+F I + +TK IF +G LE LPDGFGFLR+ NY+
Sbjct: 47 TAAKDLGVEGAPGLRKQELIFKILEAQTKSSGLIFAEGVLECLPDGFGFLRAPEYNYLPG 106
Query: 444 SDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--------------- 488
DDIY+SPSQIRRF+L TG G++R PK+GERYFAL+K++ VN
Sbjct: 107 PDDIYVSPSQIRRFDLRTGDTVSGQVRQPKDGERYFALIKVEAVNFEHPEVARNKIFFDN 166
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK+++LQ IAH+I NH
Sbjct: 167 LTPLYPMERLKLEVPGDMSSRVMDLVTPMGKGQRALIVAPPRTGKTMLLQSIAHSIAKNH 226
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 227 PEVALIVLLIDERPEEVTDMQRSVQGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKKD 286
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV P SGKVL+GG+D+NAL RPKRFFGAAR
Sbjct: 287 VVILLDSITRLARAYNTVQPPSGKVLSGGIDANALHRPKRFFGAAR 332
>gi|118581063|ref|YP_902313.1| transcription termination factor Rho [Pelobacter propionicus DSM
2379]
gi|118503773|gb|ABL00256.1| transcription termination factor Rho [Pelobacter propionicus DSM
2379]
Length = 415
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/344 (68%), Positives = 296/344 (86%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE L DGFGFLR+ NY+ DDIY+SPSQIRRFNL TGD V G+IR PK GE
Sbjct: 49 IFGEGVLETLQDGFGFLRATDYNYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PE+++ + LFDNLTPL+P++ L LE +N+ R+++L+API
Sbjct: 109 RYFALLKVESVNFESPEVAREKILFDNLTPLYPEEKLKLET---GADNLPMRVVELMAPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV GEV+
Sbjct: 166 GKGQRGLIVAPPRTGKTMLIQNIANSIAANHPEVYLIVLLIDERPEEVTDMQRSVNGEVV 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP SGK+L+GG
Sbjct: 226 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPPSGKILSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARNIEEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME+HL+R+
Sbjct: 286 VDSNALHKPKRFFGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR +PAI++NKSGTR+EELLI + L +IW+LRK+++ + +
Sbjct: 346 LVEKRTFPAIDINKSGTRKEELLIDKNSLNRIWILRKVIHPMNV 389
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/283 (45%), Positives = 161/283 (56%), Gaps = 80/283 (28%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL + LRKQ+L+FAI +T+ IFG+G LE L DGFGFLR+ NY+ DDI
Sbjct: 20 DLSIEGASSLRKQDLIFAILNAQTEQNGMIFGEGVLETLQDGFGFLRATDYNYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------- 488
Y+SPSQIRRFNL TG G+IR PK GERYFALLK++ VN
Sbjct: 80 YVSPSQIRRFNLRTGDTVSGQIRPPKEGERYFALLKVESVNFESPEVAREKILFDNLTPL 139
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IA++I NH E
Sbjct: 140 YPEEKLKLETGADNLPMRVVELMAPIGKGQRGLIVAPPRTGKTMLIQNIANSIAANHPEV 199
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV GEV++STFDEPA
Sbjct: 200 YLIVLLIDERPEEVTDMQRSVNGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVI 259
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 260 LLDSITRLARAYNTVIPPSGKILSGGVDSNALHKPKRFFGAAR 302
>gi|320106039|ref|YP_004181629.1| transcription termination factor Rho [Terriglobus saanensis SP1PR4]
gi|319924560|gb|ADV81635.1| transcription termination factor Rho [Terriglobus saanensis SP1PR4]
Length = 416
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/343 (68%), Positives = 300/343 (87%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LE+LPDG+GFLRS NY+ DDIY+SPSQIR+F+L TGD + G +R P GE
Sbjct: 49 IFAEGVLEILPDGYGFLRSPDYNYLPGPDDIYVSPSQIRKFDLKTGDTISGNVRPPHEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
+YFAL+KI+ +N E PE ++N+ LFDNLTPL+ ++ + +E +ENI+GR++DL+ P+
Sbjct: 109 KYFALVKIEAINFESPEETRNKILFDNLTPLYAEERVKME---TVRENISGRVMDLLTPV 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ IA++I+TNH E ++IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLLQSIANSISTNHPEIVLIVLLIDERPEEVTDMQRSVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNT++PASGKVL+GG
Sbjct: 226 SSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPASGKVLSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTI+ATAL++TGSRMD+VI+EEFKGTGNMEV L+R+
Sbjct: 286 VDSNALQRPKRFFGAARNIEEGGSLTIMATALVDTGSRMDEVIFEEFKGTGNMEVILDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L +KRV+PAI++ +SGTR+EELLI + LQ+IW+LRK+L L+
Sbjct: 346 LVDKRVFPAIDIQRSGTRKEELLIPKEDLQRIWILRKVLNPLS 388
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 165/282 (58%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ LRKQ+L+F I + +++ IF +G LE+LPDG+GFLRS NY+ DDIY
Sbjct: 21 LDIQGTSALRKQDLIFKILQAQSEKEGHIFAEGVLEILPDGYGFLRSPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIR+F+L TG G +R P GE+YFAL+KI+ +N
Sbjct: 81 VSPSQIRKFDLKTGDTISGNVRPPHEGEKYFALVKIEAINFESPEETRNKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+++LQ IA++I+TNH E +
Sbjct: 141 AEERVKMETVRENISGRVMDLLTPVGKGQRGLIVAPPRTGKTMLLQSIANSISTNHPEIV 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT++PASGKVL+GGVDSNALQRPKRFFGAAR
Sbjct: 261 LDSITRLARAYNTIVPASGKVLSGGVDSNALQRPKRFFGAAR 302
>gi|374310142|ref|YP_005056572.1| transcription termination factor Rho [Granulicella mallensis
MP5ACTX8]
gi|358752152|gb|AEU35542.1| transcription termination factor Rho [Granulicella mallensis
MP5ACTX8]
Length = 416
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/343 (68%), Positives = 296/343 (86%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LE+LPDG+GFLRS NY+ DDIY+SPSQIR+F+L TGD + G +R P GE
Sbjct: 49 IFAEGVLEILPDGYGFLRSPDYNYLPGPDDIYVSPSQIRKFDLKTGDTISGNVRSPHEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
+YFAL+KI+ +N E PE ++N+ LFDNLTPL+P + + +E +E I+GR++DL+ PI
Sbjct: 109 KYFALVKIEAINFESPEETRNKILFDNLTPLYPDERIKME---TVREAISGRVMDLLCPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++++Q IA++IT NH E ++IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTVLMQSIANSITANHPEVVLIVLLIDERPEEVTDMQRSVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNT++P SGKVL+GG
Sbjct: 226 SSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPPSGKVLSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTIIA+ALI+TGSRMD+VI+EEFKGTGNMEV L+R+
Sbjct: 286 VDSNALQRPKRFFGAARNIEEGGSLTIIASALIDTGSRMDEVIFEEFKGTGNMEVILDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L +KRV+PAI++ +SGTR+EELLI D LQ+ W+LRK+L L+
Sbjct: 346 LVDKRVFPAIDIQRSGTRKEELLIPKDDLQRTWILRKVLNPLS 388
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 163/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ LRKQ+L+F I + +++ IF +G LE+LPDG+GFLRS NY+ DDIY
Sbjct: 21 LEIPGTSGLRKQDLIFKILQAQSEKEGHIFAEGVLEILPDGYGFLRSPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIR+F+L TG G +R P GE+YFAL+KI+ +N
Sbjct: 81 VSPSQIRKFDLKTGDTISGNVRSPHEGEKYFALVKIEAINFESPEETRNKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q IA++IT NH E +
Sbjct: 141 PDERIKMETVREAISGRVMDLLCPIGKGQRGLIVAPPRTGKTVLMQSIANSITANHPEVV 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT++P SGKVL+GGVDSNALQRPKRFFGAAR
Sbjct: 261 LDSITRLARAYNTIVPPSGKVLSGGVDSNALQRPKRFFGAAR 302
>gi|83594948|ref|YP_428700.1| transcription termination factor Rho [Rhodospirillum rubrum ATCC
11170]
gi|386351713|ref|YP_006049961.1| transcription termination factor Rho [Rhodospirillum rubrum F11]
gi|83577862|gb|ABC24413.1| transcription termination factor Rho [Rhodospirillum rubrum ATCC
11170]
gi|346720149|gb|AEO50164.1| transcription termination factor Rho [Rhodospirillum rubrum F11]
Length = 418
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/342 (69%), Positives = 296/342 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE+L DGFGFLR+ SNY+ DDIY+SPSQ+RRF L TGD VEG+IR PK+GE
Sbjct: 49 IFGEGVLEILQDGFGFLRAPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRAPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ K+N E PE ++R FDNLTPL+P + L LE + +++ T RIIDLI P+
Sbjct: 109 RYFALLKVNKINFEAPESVRHRINFDNLTPLYPDERLKLEIDDPTRKEFTTRIIDLITPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ++AHAI+ N+ E +IV+LIDERPEEVT+M RSV GEV+
Sbjct: 169 GKGQRALIVAPPRTGKTVMLQNVAHAISANNPEVYLIVLLIDERPEEVTDMARSVNGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LA++RV+P+I++ +SGTR+EELL++ D L K+WVLR++L +
Sbjct: 349 LADRRVFPSIDIARSGTRKEELLVRKDVLSKMWVLRRILSPM 390
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 153/286 (53%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ + LRKQ++MFAI K+ + IFG+G LE+L DGFGFLR+ SNY+ DDI
Sbjct: 20 ELEIENASNLRKQDMMFAILKQLAENDTAIFGEGVLEILQDGFGFLRAPESNYLPGPDDI 79
Query: 448 -----------------------------------------YLSPSQIR-RFN------L 459
+ +P +R R N L
Sbjct: 80 YVSPSQVRRFGLRTGDTVEGQIRAPKDGERYFALLKVNKINFEAPESVRHRINFDNLTPL 139
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ K EI P E ++ + + + VA P++GK+++LQ++AHAI+ N+
Sbjct: 140 YPDERLKLEIDDPTRKEFTTRIIDLITPLGKGQRALIVAPPRTGKTVMLQNVAHAISANN 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+M RSV GEV++STFDEPA
Sbjct: 200 PEVYLIVLLIDERPEEVTDMARSVNGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|374260494|ref|ZP_09619091.1| transcription termination factor Rho [Legionella drancourtii
LLAP12]
gi|363539075|gb|EHL32472.1| transcription termination factor Rho [Legionella drancourtii
LLAP12]
Length = 420
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/359 (66%), Positives = 299/359 (83%), Gaps = 2/359 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I GDG LEVL DGFGFLRS +Y+A DDIY+SPSQIRRF L +GD + G+IR PK
Sbjct: 46 GADIHGDGVLEVLTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFGLRSGDTISGKIRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ ++N + P+ +K + LF+NLTPL + L++E+ S E++T R++DL
Sbjct: 106 DSERYFALLKVDEINYDSPDSAKRKILFENLTPLFASERLVMEQGNGSTEDLTARVVDLC 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP G+GQRGL+V+ PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEMQRSV+G
Sbjct: 166 APFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNYPECYLIVLLIDERPEEVTEMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTVIP+SGKVL
Sbjct: 226 EVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKR +GAARNIEEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+HL
Sbjct: 286 TGGVDANALQRPKRLYGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEIHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKR 363
R +AE+RV+PAIN+N+SGTRRE+LL+ + LQ+ W+LRK+L S M F I+R
Sbjct: 346 SRNIAERRVFPAININRSGTRREDLLLSPEDLQRTWILRKILQS--MDECDAIEFLIER 402
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 148/286 (51%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ V + R+RKQE++FAI K G I GDG LEVL DGFGFLRS +Y+A DDI
Sbjct: 20 EIGVENPSRMRKQEIIFAILKAHALKGADIHGDGVLEVLTDGFGFLRSADGSYLAGPDDI 79
Query: 448 -----------------------------------------YLSPSQIRRFNLHTGI--L 464
Y SP +R L + L
Sbjct: 80 YVSPSQIRRFGLRSGDTISGKIRPPKDSERYFALLKVDEINYDSPDSAKRKILFENLTPL 139
Query: 465 WKGEIRVPKNGERYFALLKIKKVN-------------VASPKSGKSIILQHIAHAITTNH 511
+ E V + G L + V+ V+ PK+GK+++LQ+IA +I N+
Sbjct: 140 FASERLVMEQGNGSTEDLTARVVDLCAPFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNY 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEMQRSV+GEV+ASTFDEPA
Sbjct: 200 PECYLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NALQRPKR +GAAR
Sbjct: 260 VVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRLYGAAR 305
>gi|254483277|ref|ZP_05096509.1| transcription termination factor Rho [marine gamma proteobacterium
HTCC2148]
gi|214036500|gb|EEB77175.1| transcription termination factor Rho [marine gamma proteobacterium
HTCC2148]
Length = 422
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/354 (70%), Positives = 306/354 (86%), Gaps = 3/354 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+ ERYFALLK+ ++N KPE +K++ LF+NLTPL P + + LE+ S E++TGRII
Sbjct: 103 PPKDSERYFALLKVGEINFSKPESAKHKILFENLTPLFPDERMTLEKGNGSSEDLTGRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGLLVA PK+GK+I++Q+IA AI +N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLVAPIGKGQRGLLVAPPKAGKTIMMQNIAQAIISNNPDCHIIVLLIDERPEEVTEMQRS 222
Query: 182 V--RG-EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIP 238
V RG EV+ASTFDEP RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP
Sbjct: 223 VGARGAEVVASTFDEPPSRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIP 282
Query: 239 ASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTG 298
+SGKVLTGGVD++AL+RPKRFFGAARNIEEGGSL+IIATALI TGS+MD+VIYEEFKGTG
Sbjct: 283 SSGKVLTGGVDAHALERPKRFFGAARNIEEGGSLSIIATALINTGSKMDEVIYEEFKGTG 342
Query: 299 NMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
NME+HL+R++AEKRVYPAIN+ SGTRREELL +++L ++W+LRKLL+ + T
Sbjct: 343 NMELHLDRKVAEKRVYPAINIRSSGTRREELLTGEEELARMWILRKLLHGMEDT 396
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
D+ ++++ R RKQ+++FAI K+ K GE I+GDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 DMGLDNMARSRKQDIIFAILKRHAKSGEDIYGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK+ ERYFALLK+ ++N + P+S K IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKDSERYFALLKVGEINFSKPESAKHKIL 132
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 92/132 (69%), Gaps = 30/132 (22%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV--RG-EVIASTFD 545
VA PK+GK+I++Q+IA AI +N+ + +IV+LIDERPEEVTEMQRSV RG EV+ASTFD
Sbjct: 177 VAPPKAGKTIMMQNIAQAIISNNPDCHIIVLLIDERPEEVTEMQRSVGARGAEVVASTFD 236
Query: 546 EPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNA 578
EP L + +LARAYNTVIP+SGKVLTGGVD++A
Sbjct: 237 EPPSRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHA 296
Query: 579 LQRPKRFFGAAR 590
L+RPKRFFGAAR
Sbjct: 297 LERPKRFFGAAR 308
>gi|332186940|ref|ZP_08388681.1| transcription termination factor Rho [Sphingomonas sp. S17]
gi|332012950|gb|EGI55014.1| transcription termination factor Rho [Sphingomonas sp. S17]
Length = 418
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/345 (67%), Positives = 299/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G++I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R+ L TGD VEGEIR PK
Sbjct: 46 GDQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKHGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ VN + PE ++R FDNLTPL+P++ L+L+ ++++ + R+ID++
Sbjct: 106 DGERYFALTKLTSVNFDDPEAVRHRVNFDNLTPLYPEQKLILDPADPTQKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSVRG
Sbjct: 166 SPQGKGQRTLIVAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL++ DKL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPAMDVGKSGTRKEELLVEKDKLSKMWVLRRILMQM 390
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 161/306 (52%), Gaps = 88/306 (28%)
Query: 369 KNLLKDACMPLV-LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLP 427
K+L K LV LAE +L V S LRKQ+L+FAI K++ + G++I G G++EVLP
Sbjct: 4 KDLKKKTPADLVQLAE----ELGVESASTLRKQDLLFAILKEQAEQGDQIMGLGTIEVLP 59
Query: 428 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKV 487
DGFGFLRS +NY+A DDIY+SP+Q+R+ L TG +GEIR PK+GERYFAL K+ V
Sbjct: 60 DGFGFLRSPEANYLAGPDDIYVSPNQVRKHGLRTGDTVEGEIRAPKDGERYFALTKLTSV 119
Query: 488 NVASPKS---------------GKSIILQHIAHAITTNHSEAIMIV-------------- 518
N P++ + +IL + I IV
Sbjct: 120 NFDDPEAVRHRVNFDNLTPLYPEQKLILDPADPTQKDKSARVIDIVSPQGKGQRTLIVAP 179
Query: 519 --------------MLIDERPE-------------EVTEMQRSVRGEVIASTFDEPA--- 548
+ D PE EVT+MQRSVRGEV++STFDEPA
Sbjct: 180 PRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAQRH 239
Query: 549 ------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKR 584
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKR
Sbjct: 240 VQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKR 299
Query: 585 FFGAAR 590
FFGAAR
Sbjct: 300 FFGAAR 305
>gi|407772670|ref|ZP_11119972.1| transcription termination factor Rho [Thalassospira profundimaris
WP0211]
gi|407284623|gb|EKF10139.1| transcription termination factor Rho [Thalassospira profundimaris
WP0211]
Length = 421
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/342 (70%), Positives = 295/342 (86%), Gaps = 3/342 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LEVLPDGFGFLRS +NY+A DDIY+SPSQ+RRF+L TGD VEG+IR PK GE
Sbjct: 49 IFGEGVLEVLPDGFGFLRSPEANYLAGPDDIYVSPSQVRRFSLRTGDTVEGQIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIE---SKENITGRIIDLI 124
RYFALLK+ KVN + PE + R FDNLTPL+P + L +ER + + ++ T R+I+L+
Sbjct: 109 RYFALLKVDKVNFDAPEKVRQRVNFDNLTPLYPDEPLKMERQSDQEGANKDTTNRVIELV 168
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P+GKGQR L+VA P++GK+++LQ+IAHAI NH EA +IV+LIDERPEEVT+M RSV+G
Sbjct: 169 SPLGKGQRALIVAPPRTGKTVMLQNIAHAIEENHPEAYLIVLLIDERPEEVTDMDRSVKG 228
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQV EMVLEKAKRLVE K DV+ILLDSITRLARAYNTV+P+SGKVL
Sbjct: 229 EVISSTFDEPAQRHVQVTEMVLEKAKRLVEHKHDVVILLDSITRLARAYNTVVPSSGKVL 288
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 289 TGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELIL 348
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R+L++KR++PAI++ KSGTR+EELL+ L K+WVLR++L
Sbjct: 349 DRKLSDKRIFPAIDILKSGTRKEELLVDKSVLSKMWVLRRIL 390
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAI NH EA +IV+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 180 VAPPRTGKTVMLQNIAHAIEENHPEAYLIVLLIDERPEEVTDMDRSVKGEVISSTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 240 QRHVQVTEMVLEKAKRLVEHKHDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 81/106 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ + LRKQELMFAI K+ + IFG+G LEVLPDGFGFLRS +NY+A DDI
Sbjct: 20 ELEIENASTLRKQELMFAILKQLAENDHAIFGEGVLEVLPDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK 493
Y+SPSQ+RRF+L TG +G+IR PK GERYFALLK+ KVN +P+
Sbjct: 80 YVSPSQVRRFSLRTGDTVEGQIRSPKEGERYFALLKVDKVNFDAPE 125
>gi|294010022|ref|YP_003543482.1| transcription termination factor [Sphingobium japonicum UT26S]
gi|390169650|ref|ZP_10221583.1| transcription termination factor Rho [Sphingobium indicum B90A]
gi|292673352|dbj|BAI94870.1| transcription termination factor [Sphingobium japonicum UT26S]
gi|389587654|gb|EIM65716.1| transcription termination factor Rho [Sphingobium indicum B90A]
Length = 418
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/345 (67%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I G+G++EVLPDGFGFLRS +N++A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GEQIMGEGTIEVLPDGFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ VN + PE+ ++R FDNLTPL+P + L L+ + ++ + R+ID++
Sbjct: 106 DGERYFALTKLISVNFDDPEVVRHRVNFDNLTPLYPTQKLTLDATDPTVKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ KL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVDKAKLSKMWVLRRILMQM 390
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 158/305 (51%), Gaps = 86/305 (28%)
Query: 369 KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD 428
K+L K A LV T +L V LRKQ+LMFAI K + GE+I G+G++EVLPD
Sbjct: 4 KDLKKKAPAELV---TMAEELGVEGASTLRKQDLMFAILKVEADNGEQIMGEGTIEVLPD 60
Query: 429 GFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
GFGFLRS +N++A DDIY+SP+Q+R+F L TG +GEIR PK+GERYFAL K+ VN
Sbjct: 61 GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLISVN 120
Query: 489 VASPK---------------SGKSIILQHIAHAITTNHSEAIMIV--------------- 518
P+ + + L + + I IV
Sbjct: 121 FDDPEVVRHRVNFDNLTPLYPTQKLTLDATDPTVKDKSARVIDIVSPQGKGQRALIVAPP 180
Query: 519 -------------MLIDERPE-------------EVTEMQRSVRGEVIASTFDEPA---- 548
+ D PE EVT+MQRSV+GEV++STFDEPA
Sbjct: 181 RTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV 240
Query: 549 -----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRF 585
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF 300
Query: 586 FGAAR 590
FGAAR
Sbjct: 301 FGAAR 305
>gi|392412304|ref|YP_006448911.1| transcription termination factor Rho [Desulfomonile tiedjei DSM
6799]
gi|390625440|gb|AFM26647.1| transcription termination factor Rho [Desulfomonile tiedjei DSM
6799]
Length = 417
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/363 (65%), Positives = 297/363 (81%), Gaps = 5/363 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFN+ TGD + G IR PK+ E
Sbjct: 51 IRGEGVLETLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNMRTGDTIAGYIRPPKDTE 110
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ +N E PE +++ LFDNLTPL+P L LE S N + R++DL+ PI
Sbjct: 111 RYFALLKVEAINTEDPEKIRDKVLFDNLTPLYPNDRLKLE---TSPTNYSMRVMDLLTPI 167
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+V+ PK+GK+++LQ IA+++T NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 168 GKGQRGLIVSPPKAGKTVLLQQIANSLTRNHPEVYLIVLLIDERPEEVTDMQRSVRGEVI 227
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVA+MV+EKAKRLVE K+DV+ILLDSITRLARA+NTV+P SGK+L+GG
Sbjct: 228 SSTFDEPAQRHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAHNTVVPPSGKILSGG 287
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL RPKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+HL+RR
Sbjct: 288 VDSNALHRPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEIHLDRR 347
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPV 367
L E+R++P I++N+SGTR+EELL+ LQ+IW+LRKLL M S F + + +
Sbjct: 348 LLERRIFPCIDINRSGTRKEELLLSQQDLQRIWLLRKLLAD--MNSVDAMEFLLDKIVQT 405
Query: 368 EKN 370
+ N
Sbjct: 406 DSN 408
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/284 (45%), Positives = 163/284 (57%), Gaps = 82/284 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFK--KKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDD 446
L+V +RKQEL+FAI + ++T+ I G+G LE LPDGFGFLR+ NY+ DD
Sbjct: 21 LDVEGASSMRKQELIFAILQAHQQTEKEAPIRGEGVLETLPDGFGFLRAPDYNYLPGPDD 80
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------ 488
IY+SPSQIRRFN+ TG G IR PK+ ERYFALLK++ +N
Sbjct: 81 IYVSPSQIRRFNMRTGDTIAGYIRPPKDTERYFALLKVEAINTEDPEKIRDKVLFDNLTP 140
Query: 489 -----------------------------------VASPKSGKSIILQHIAHAITTNHSE 513
V+ PK+GK+++LQ IA+++T NH E
Sbjct: 141 LYPNDRLKLETSPTNYSMRVMDLLTPIGKGQRGLIVSPPKAGKTVLLQQIANSLTRNHPE 200
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 201 VYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAQRHVQVADMVIEKAKRLVEHKRDVV 260
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARA+NTV+P SGK+L+GGVDSNAL RPKRFFGAAR
Sbjct: 261 ILLDSITRLARAHNTVVPPSGKILSGGVDSNALHRPKRFFGAAR 304
>gi|381205453|ref|ZP_09912524.1| transcription termination factor Rho [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 415
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/350 (68%), Positives = 298/350 (85%), Gaps = 3/350 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+TK I+G G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFN+ TGD + G I
Sbjct: 42 QTKQNGVIYGSGVLETLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNMRTGDTISGHI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK ERY+ALLK+++VN P+ + + LFDNLTPL+P++ L LER +++T R+
Sbjct: 102 RPPKESERYYALLKVEEVNFRPPDQAFEKILFDNLTPLYPEERLSLER---GDKDLTTRV 158
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DL APIGKGQRGL+VA P++GK++ILQ IA++ITTNH E +IV+LIDERPEEVT+MQR
Sbjct: 159 MDLAAPIGKGQRGLIVAPPRTGKTMILQSIANSITTNHPEVDLIVLLIDERPEEVTDMQR 218
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHVQV+EMVLEKAKRLVE ++DV+ILLDSITRLARAYN+V+P S
Sbjct: 219 SVRGEVISSTFDEPATRHVQVSEMVLEKAKRLVEHQRDVVILLDSITRLARAYNSVVPPS 278
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVDSNAL +PKRFFGAARN+EEGGSLTIIATALIETGSRMD+VI+EEFKGTGNM
Sbjct: 279 GKILSGGVDSNALHKPKRFFGAARNVEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNM 338
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
E+ L+R+L EKR++PAI++NKSGTR+EELL++ + L +IWVLRK+L L+
Sbjct: 339 ELMLDRKLVEKRIFPAIDINKSGTRKEELLMEKNDLDRIWVLRKVLAQLS 388
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 161/280 (57%), Gaps = 80/280 (28%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ + +R QEL+FA+ + +TK I+G G LE LPDGFGFLR+ NY+ DDIY+S
Sbjct: 23 IENANSMRVQELIFALLQAQTKQNGVIYGSGVLETLPDGFGFLRAPDYNYLPGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFN+ TG G IR PK ERY+ALLK+++VN
Sbjct: 83 PSQIRRFNMRTGDTISGHIRPPKESERYYALLKVEEVNFRPPDQAFEKILFDNLTPLYPE 142
Query: 489 -------------------------------VASPKSGKSIILQHIAHAITTNHSEAIMI 517
VA P++GK++ILQ IA++ITTNH E +I
Sbjct: 143 ERLSLERGDKDLTTRVMDLAAPIGKGQRGLIVAPPRTGKTMILQSIANSITTNHPEVDLI 202
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVT+MQRSVRGEVI+STFDEPA L
Sbjct: 203 VLLIDERPEEVTDMQRSVRGEVISSTFDEPATRHVQVSEMVLEKAKRLVEHQRDVVILLD 262
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN+V+P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 263 SITRLARAYNSVVPPSGKILSGGVDSNALHKPKRFFGAAR 302
>gi|390958157|ref|YP_006421914.1| transcription termination factor Rho [Terriglobus roseus DSM 18391]
gi|390958497|ref|YP_006422254.1| transcription termination factor Rho [Terriglobus roseus DSM 18391]
gi|390413075|gb|AFL88579.1| transcription termination factor Rho [Terriglobus roseus DSM 18391]
gi|390413415|gb|AFL88919.1| transcription termination factor Rho [Terriglobus roseus DSM 18391]
Length = 416
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/343 (67%), Positives = 298/343 (86%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LE+LPDG+GFLRS NY+ DDIY+SPSQIR+F+L TGD + G +R P GE
Sbjct: 49 IFAEGVLEILPDGYGFLRSPDYNYLPGPDDIYVSPSQIRKFDLKTGDTISGNVRPPHEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
+YFAL+KI+ +N E PE ++N+ LFDNLTPL+ ++ + +E ++NI+GR++DL+ P+
Sbjct: 109 KYFALVKIEAINFESPEETRNKILFDNLTPLYAEERVKMET---VRDNISGRVMDLLTPV 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ IA++ITTNH E ++IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTVLLQSIANSITTNHPEVVLIVLLIDERPEEVTDMQRSVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNT++P SGKVL+GG
Sbjct: 226 SSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPPSGKVLSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTI+ATAL++TGSRMD+VI+EEFKGTGNMEV L+R+
Sbjct: 286 VDSNALQRPKRFFGAARNIEEGGSLTIMATALVDTGSRMDEVIFEEFKGTGNMEVILDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L +KRV+PAI++ +SGTR+EELLI + LQ+ W+LRK+L L+
Sbjct: 346 LVDKRVFPAIDIQRSGTRKEELLIPKEDLQRTWILRKVLNPLS 388
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 164/282 (58%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ LRKQ+L+F I + +++ IF +G LE+LPDG+GFLRS NY+ DDIY
Sbjct: 21 LEIQGTSALRKQDLIFKILQAQSEKEGHIFAEGVLEILPDGYGFLRSPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIR+F+L TG G +R P GE+YFAL+KI+ +N
Sbjct: 81 VSPSQIRKFDLKTGDTISGNVRPPHEGEKYFALVKIEAINFESPEETRNKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+++LQ IA++ITTNH E +
Sbjct: 141 AEERVKMETVRDNISGRVMDLLTPVGKGQRGLIVAPPRTGKTVLLQSIANSITTNHPEVV 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT++P SGKVL+GGVDSNALQRPKRFFGAAR
Sbjct: 261 LDSITRLARAYNTIVPPSGKVLSGGVDSNALQRPKRFFGAAR 302
>gi|13473778|ref|NP_105346.1| transcription termination factor Rho [Mesorhizobium loti
MAFF303099]
gi|14024529|dbj|BAB51132.1| transcription termination factor Rho [Mesorhizobium loti
MAFF303099]
Length = 418
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGDGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P L +E + + ++I+ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFDDPEKIRHKIHFDNLTPLYPTSRLKMEMEVPTSKDISPRVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 169 GKGQRALIVAQPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR+YPA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 VADKRIYPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 394
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 166/302 (54%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
K+ P ++A +++++E SV +RKQELMFAI KK I GDG +EVL DGFG
Sbjct: 6 FKNKKPPELIAYAESLEVENASV--MRKQELMFAILKKLAAQDVEIIGDGVVEVLQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLS----------------------------------------- 450
FLRS +NY+ DDIY+S
Sbjct: 64 FLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFDD 123
Query: 451 PSQIRR---FN----LHTGILWKGEIRVPKNGE---RYFALLKI-----KKVNVASPKSG 495
P +IR F+ L+ K E+ VP + + R L+ + + VA P++G
Sbjct: 124 PEKIRHKIHFDNLTPLYPTSRLKMEMEVPTSKDISPRVIDLVAPLGKGQRALIVAQPRTG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 184 KTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>gi|359788472|ref|ZP_09291448.1| transcription termination factor Rho [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359255729|gb|EHK58625.1| transcription termination factor Rho [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 418
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/346 (67%), Positives = 297/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGDGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + L +E + + ++I+ R+IDL+API
Sbjct: 109 RYFALLKVNTINFDDPEKIRHKIHFDNLTPLYPNERLKMEVDNPTGKDISSRVIDLVAPI 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH++TTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 169 GKGQRGLIVAQPRTGKTVLLQNIAHSVTTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAMDILKSGTRKEDLLVPKQDLQKIFVLRRILAPMGTTD 394
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/285 (47%), Positives = 162/285 (56%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I GDG +EVL DGFGFLRS +NY+ DDIY
Sbjct: 21 LEVENASVMRKQELMFAILKKLAAQDVEIIGDGVVEVLQDGFGFLRSANANYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK--------------- 493
+SPSQIRRF+L TG +G IR PK GERYFALLK+ +N P+
Sbjct: 81 ISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFDDPEKIRHKIHFDNLTPLY 140
Query: 494 ------------SGKSI-----------------------------ILQHIAHAITTNHS 512
+GK I +LQ+IAH++TTNH
Sbjct: 141 PNERLKMEVDNPTGKDISSRVIDLVAPIGKGQRGLIVAQPRTGKTVLLQNIAHSVTTNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 201 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 261 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|218783035|ref|YP_002434353.1| transcription termination factor Rho [Desulfatibacillum
alkenivorans AK-01]
gi|218764419|gb|ACL06885.1| transcription termination factor Rho [Desulfatibacillum
alkenivorans AK-01]
Length = 422
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/343 (68%), Positives = 294/343 (85%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G+LE+LPDGFGFLR+ NY+ DDIY+SPSQIRRFNL TGD V G+IR PK E
Sbjct: 56 IHGEGTLEILPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLRTGDTVAGQIRQPKESE 115
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PE+S+++ LFDNLTPL+P + +ER +N + RII+L+ PI
Sbjct: 116 RYFALLKVESVNFEDPEVSRDKILFDNLTPLYPNDRMNMER---EADNYSVRIINLLTPI 172
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
G GQRGL+V+ P+SGK+++LQ+IA++I NH + +IV+LIDERPEEVT+MQRSV+ EVI
Sbjct: 173 GFGQRGLIVSPPRSGKTMLLQNIANSINANHKDVFLIVLLIDERPEEVTDMQRSVKAEVI 232
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+P SGK+L+GG
Sbjct: 233 SSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPPSGKILSGG 292
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL RPKRFFGAARN+EEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN+E+ L+RR
Sbjct: 293 VDSNALHRPKRFFGAARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNLELQLDRR 352
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LA+KR +PAI++N+SGTR+EELL+ + L ++W+LRKLL SL
Sbjct: 353 LADKRTFPAIDINRSGTRKEELLLPPETLNRVWILRKLLSSLN 395
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/305 (43%), Positives = 173/305 (56%), Gaps = 82/305 (26%)
Query: 366 PVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEV 425
P+ LKD + + A ++ ++E +RKQEL+FAI + +T+ I G+G+LE+
Sbjct: 7 PMNLGALKDKKINELAAIGKSFNIE--GAAGMRKQELIFAILRAQTEKNGMIHGEGTLEI 64
Query: 426 LPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK 485
LPDGFGFLR+ NY+ DDIY+SPSQIRRFNL TG G+IR PK ERYFALLK++
Sbjct: 65 LPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLRTGDTVAGQIRQPKESERYFALLKVE 124
Query: 486 KVN-----------------------------------------------------VASP 492
VN V+ P
Sbjct: 125 SVNFEDPEVSRDKILFDNLTPLYPNDRMNMEREADNYSVRIINLLTPIGFGQRGLIVSPP 184
Query: 493 KSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---- 548
+SGK+++LQ+IA++I NH + +IV+LIDERPEEVT+MQRSV+ EVI+STFDEPA
Sbjct: 185 RSGKTMLLQNIANSINANHKDVFLIVLLIDERPEEVTDMQRSVKAEVISSTFDEPAQRHV 244
Query: 549 -----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRF 585
L + +LARAYNTV+P SGK+L+GGVDSNAL RPKRF
Sbjct: 245 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPPSGKILSGGVDSNALHRPKRF 304
Query: 586 FGAAR 590
FGAAR
Sbjct: 305 FGAAR 309
>gi|322434631|ref|YP_004216843.1| transcription termination factor Rho [Granulicella tundricola
MP5ACTX9]
gi|321162358|gb|ADW68063.1| transcription termination factor Rho [Granulicella tundricola
MP5ACTX9]
Length = 416
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/345 (67%), Positives = 298/345 (86%), Gaps = 3/345 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LE+LPDG+GFLRS NY+ DDIY+SPSQIR+F+L TGD + G +R P GE
Sbjct: 49 IFAEGVLEILPDGYGFLRSPDYNYLPGPDDIYVSPSQIRKFDLKTGDTISGNVRSPHEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
+YFAL+KI+ +N E PE ++N+ LFDNLTPL+ ++ + +E +E+I+GR++DL+ P+
Sbjct: 109 KYFALVKIEAINFESPEETRNKVLFDNLTPLYAQERVKME---TVREHISGRVMDLLTPV 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ IA++IT NH E ++IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLLQSIANSITANHPEVVLIVLLIDERPEEVTDMQRSVRGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNT++P SGKVL+GG
Sbjct: 226 SSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPPSGKVLSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGNMEV L+R+
Sbjct: 286 VDSNALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEVILDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
L +KRV+PAI++ +SGTR+EELLI + LQ+ W+LRK+L L+ T
Sbjct: 346 LVDKRVFPAIDIQRSGTRKEELLIPKEDLQRTWILRKVLNPLSPT 390
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 163/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ LRKQ+L+F I + +++ IF +G LE+LPDG+GFLRS NY+ DDIY
Sbjct: 21 LDIGGTSGLRKQDLIFKILQAQSEKEGHIFAEGVLEILPDGYGFLRSPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIR+F+L TG G +R P GE+YFAL+KI+ +N
Sbjct: 81 VSPSQIRKFDLKTGDTISGNVRSPHEGEKYFALVKIEAINFESPEETRNKVLFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+++LQ IA++IT NH E +
Sbjct: 141 AQERVKMETVREHISGRVMDLLTPVGKGQRGLIVAPPRTGKTMLLQSIANSITANHPEVV 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 201 LIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAARHVQVAEMVIEKAKRLVEHKRDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT++P SGKVL+GGVDSNALQRPKRFFGAAR
Sbjct: 261 LDSITRLARAYNTIVPPSGKVLSGGVDSNALQRPKRFFGAAR 302
>gi|427427558|ref|ZP_18917602.1| Transcription termination factor Rho [Caenispirillum salinarum AK4]
gi|425883484|gb|EKV32160.1| Transcription termination factor Rho [Caenispirillum salinarum AK4]
Length = 418
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/342 (68%), Positives = 292/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+L DGFGFLR+ +NY+ DDIY+SPSQ+RRF L TGD VEG+IR PK+GE
Sbjct: 49 IYGDGVLEILQDGFGFLRAPEANYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRAPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ ++N E PE ++R FDNLTPL+P + L LE + +K++ T R+IDL+AP+
Sbjct: 109 RYFALLKVNQINFEAPEAVRHRINFDNLTPLYPDQKLNLEIDDPTKKDRTARVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR LLVA P++GK+++LQ++A +I NH E +IV+LIDERPEEVT+M RSV GEV+
Sbjct: 169 GKGQRALLVAPPRTGKTVMLQNLASSIAANHPEVYLIVLLIDERPEEVTDMARSVNGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAQRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTII TALIETGSRMD+VI+EEFKGTGN E+ ++R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEIVMDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L++KR++PAIN+ SGTR+EELL++ L K+WVLR++L +
Sbjct: 349 LSDKRIFPAINITASGTRKEELLVEKSTLSKMWVLRRILSPM 390
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 143/286 (50%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL-----------------PDGF 430
+LEV + LRKQ++MFAI K+ + I+GDG LE+L PD
Sbjct: 20 ELEVENASSLRKQDMMFAILKQLAENDTPIYGDGVLEILQDGFGFLRAPEANYLPGPDDI 79
Query: 431 GFLRSQGSNYMASSDDI------------------------YLSPSQIR-RFN------L 459
SQ + + D + +P +R R N L
Sbjct: 80 YVSPSQVRRFGLRTGDTVEGQIRAPKDGERYFALLKVNQINFEAPEAVRHRINFDNLTPL 139
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ EI P +R ++ + + + VA P++GK+++LQ++A +I NH
Sbjct: 140 YPDQKLNLEIDDPTKKDRTARVIDLVAPLGKGQRALLVAPPRTGKTVMLQNLASSIAANH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+M RSV GEV++STFDEPA
Sbjct: 200 PEVYLIVLLIDERPEEVTDMARSVNGEVVSSTFDEPAQRHVQVTEMVLEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|334345863|ref|YP_004554415.1| Baf family transcriptional activator [Sphingobium chlorophenolicum
L-1]
gi|334102485|gb|AEG49909.1| transcription termination factor Rho [Sphingobium chlorophenolicum
L-1]
Length = 418
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I G+G++EVLPDGFGFLRS +N++A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GEQIMGEGTIEVLPDGFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ VN + P++ ++R FDNLTPL+P + L L+ + ++ + R+ID++
Sbjct: 106 DGERYFALTKLISVNFDDPDVVRHRVNFDNLTPLYPTQKLTLDATDPTVKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ KL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVDKAKLSKMWVLRRILMQM 390
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 158/305 (51%), Gaps = 86/305 (28%)
Query: 369 KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD 428
K+L K A LV T +L V LRKQ+LMFAI K + + GE+I G+G++EVLPD
Sbjct: 4 KDLKKKAPADLV---TMAEELGVEGASTLRKQDLMFAILKVEAENGEQIMGEGTIEVLPD 60
Query: 429 GFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
GFGFLRS +N++A DDIY+SP+Q+R+F L TG +GEIR PK+GERYFAL K+ VN
Sbjct: 61 GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLISVN 120
Query: 489 VASPK---------------SGKSIILQHIAHAITTNHSEAIMIV--------------- 518
P + + L + + I IV
Sbjct: 121 FDDPDVVRHRVNFDNLTPLYPTQKLTLDATDPTVKDKSARVIDIVSPQGKGQRALIVAPP 180
Query: 519 -------------MLIDERPE-------------EVTEMQRSVRGEVIASTFDEPA---- 548
+ D PE EVT+MQRSV+GEV++STFDEPA
Sbjct: 181 RTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV 240
Query: 549 -----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRF 585
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF 300
Query: 586 FGAAR 590
FGAAR
Sbjct: 301 FGAAR 305
>gi|359409290|ref|ZP_09201758.1| transcription termination factor Rho [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676043|gb|EHI48396.1| transcription termination factor Rho [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 419
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/343 (69%), Positives = 294/343 (85%), Gaps = 1/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G LEVL DGFGFLR+ SNY+ DDIY+SPSQ+RRF+L TGD VEGEIR PK+GE
Sbjct: 49 IRGTGVLEVLSDGFGFLRAPESNYLPGPDDIYISPSQVRRFSLRTGDTVEGEIRAPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIE-SKENITGRIIDLIAP 126
RYFALLK++ +N E PE ++R FDNLTPL+P + L +E + +++ T R++DLI+P
Sbjct: 109 RYFALLKVESINFEDPEAVRHRINFDNLTPLYPDEKLTMELPFDPDRKDNTPRVMDLISP 168
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQRGL+VA P++GK+++LQ IAHAI+ NH E +IV+LIDERPEEVT+MQRSV GEV
Sbjct: 169 IGKGQRGLIVAPPRTGKTMMLQSIAHAISVNHPEVYLIVLLIDERPEEVTDMQRSVNGEV 228
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEPA RHVQV +MV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTG
Sbjct: 229 ISSTFDEPALRHVQVTDMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTG 288
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVD+NALQRPKRFFGAARN+E+GGSLTIIATALIETGSRMD+VI+EEFKGTGN EV L+R
Sbjct: 289 GVDANALQRPKRFFGAARNVEQGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEVVLDR 348
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+L++KRV+PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 349 KLSDKRVFPAIDVTKSGTRKEELLVDKQTLSKMWVLRRILMQM 391
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IAHAI+ NH E +IV+LIDERPEEVT+MQRSV GEVI+STFDEPA
Sbjct: 178 VAPPRTGKTMMLQSIAHAISVNHPEVYLIVLLIDERPEEVTDMQRSVNGEVISSTFDEPA 237
Query: 549 L---------------------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 238 LRHVQVTDMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 77/107 (71%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ + LR Q++MFAI K+ + I G G LEVL DGFGFLR+ SNY+ DDI
Sbjct: 20 ELEIENASTLRTQDMMFAILKQLAENDVVIRGTGVLEVLSDGFGFLRAPESNYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+SPSQ+RRF+L TG +GEIR PK+GERYFALLK++ +N P++
Sbjct: 80 YISPSQVRRFSLRTGDTVEGEIRAPKDGERYFALLKVESINFEDPEA 126
>gi|383640125|ref|ZP_09952531.1| transcription termination factor Rho [Sphingomonas elodea ATCC
31461]
Length = 418
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/345 (67%), Positives = 299/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G++I G+G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GDQIMGEGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRGPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ KVN + P+ ++R FDNLTPL+P++ L L+ + ++ + R+ID++
Sbjct: 106 DGERYFALTKLVKVNFDDPDAVRHRVNFDNLTPLYPEQKLRLDTLDPTVKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 APQGKGQRALIVAPPRVGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL++ KL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVEKAKLTKMWVLRRILMQM 390
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 163/306 (53%), Gaps = 88/306 (28%)
Query: 369 KNLLKDACMPLV-LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLP 427
K+L K A LV +AE L V S LRKQ+L+FAI K + + G++I G+G++EVLP
Sbjct: 4 KDLKKTAPAELVTMAEA----LGVESASTLRKQDLLFAILKAQAEQGDQIMGEGTIEVLP 59
Query: 428 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKV 487
DGFGFLRS +NY+A DDIY+SP+Q+R+F L TG +GEIR PK+GERYFAL K+ KV
Sbjct: 60 DGFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRGPKDGERYFALTKLVKV 119
Query: 488 NVASPKSGKSII---------------LQHIAHAITTNHSEAIMIV-------------- 518
N P + + + L + + + I IV
Sbjct: 120 NFDDPDAVRHRVNFDNLTPLYPEQKLRLDTLDPTVKDKSARVIDIVAPQGKGQRALIVAP 179
Query: 519 --------------MLIDERPE-------------EVTEMQRSVRGEVIASTFDEPA--- 548
+ D PE EVT+MQRSV+GEVI+STFDEPA
Sbjct: 180 PRVGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPATRH 239
Query: 549 ------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKR 584
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKR
Sbjct: 240 VQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKR 299
Query: 585 FFGAAR 590
FFGAAR
Sbjct: 300 FFGAAR 305
>gi|399154329|ref|ZP_10754396.1| transcription termination factor Rho [gamma proteobacterium SCGC
AAA007-O20]
Length = 420
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/363 (65%), Positives = 303/363 (83%), Gaps = 2/363 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
K+ E + GDG L++L +G+GFLRS +Y++ DDIY+SP+QIRRFNL+TGD V G+I
Sbjct: 42 KSDNDEEVLGDGVLDILQEGYGFLRSSNDSYVSGPDDIYVSPNQIRRFNLYTGDVVVGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK GE+YFAL+K+ +VN +KP+ +NR F +LTPLHP + L LE E+IT R+
Sbjct: 102 RAPKKGEKYFALVKVSEVNEDKPDNVRNRIPFASLTPLHPNERLNLELGNGGTEDITARV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+AP G+GQRGL+V+ PK+GK++I+Q+IA +I+ NH + +IV+LIDERPEEVTEM+R
Sbjct: 162 IDLVAPFGRGQRGLIVSPPKAGKTMIMQNIASSISINHPDCELIVLLIDERPEEVTEMER 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEVI+STFDEPA RHVQVAE+V+ KAKR E KDVIILLDSITRLARAYNTV P+S
Sbjct: 222 TVRGEVISSTFDEPAKRHVQVAEIVIAKAKRRAEQGKDVIILLDSITRLARAYNTVAPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIE GGS+TIIATAL++TGS+MD+VIY+EFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIENGGSVTIIATALVDTGSKMDEVIYQEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFF 360
E+HLERRL+EKR++PAIN+N SGTRREEL+ ++ +LQK+W+LRK+L+ M + + F
Sbjct: 342 ELHLERRLSEKRIFPAININASGTRREELITEEQELQKMWILRKILHP--MDTVEAAEFL 399
Query: 361 IKR 363
I+R
Sbjct: 400 IER 402
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++I+Q+IA +I+ NH + +IV+LIDERPEEVTEM+R+VRGEVI+STFDEPA
Sbjct: 177 VSPPKAGKTMIMQNIASSISINHPDCELIVLLIDERPEEVTEMERTVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD+NALQR
Sbjct: 237 KRHVQVAEIVIAKAKRRAEQGKDVIILLDSITRLARAYNTVAPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 77/106 (72%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ R +KQ L+FAI K K+ E + GDG L++L +G+GFLRS +Y++ DDIY
Sbjct: 21 LGIENISRAKKQTLIFAILKSKSDNDEEVLGDGVLDILQEGYGFLRSSNDSYVSGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+SP+QIRRFNL+TG + G+IR PK GE+YFAL+K+ +VN P +
Sbjct: 81 VSPNQIRRFNLYTGDVVVGKIRAPKKGEKYFALVKVSEVNEDKPDN 126
>gi|83313652|ref|YP_423916.1| transcription termination factor Rho [Magnetospirillum magneticum
AMB-1]
gi|82948493|dbj|BAE53357.1| Transcription termination factor [Magnetospirillum magneticum
AMB-1]
Length = 418
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/342 (68%), Positives = 294/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD V+G+IR PK+GE
Sbjct: 49 IYGDGVLEILQDGFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVDGQIRAPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE ++R FDNLTPL+P + L LE +++++T R+IDL+API
Sbjct: 109 RYFALLKVNNINFEDPEKVRHRINFDNLTPLYPDEKLKLEIEDPTRKDLTTRVIDLVAPI 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ++AHAI+ NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 169 GKGQRALIVAPPRTGKTVMLQNMAHAISLNHPEVYLIVLLIDERPEEVTDMARSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPASRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L++KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 349 LSDKRTFPAIDITKSGTRKEELLVDKGILSKMWVLRRILMPM 390
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 148/286 (51%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL-----------------PDGF 430
+LEV + LRKQ++MFAI K+ I+GDG LE+L PD
Sbjct: 20 ELEVENASTLRKQDMMFAILKQLADNDTPIYGDGVLEILQDGFGFLRSPEANYLPGPDDI 79
Query: 431 GFLRSQ---------------------GSNYMA--SSDDI-YLSPSQIR-RFN------L 459
SQ G Y A ++I + P ++R R N L
Sbjct: 80 YVSPSQVRRFGLRTGDTVDGQIRAPKDGERYFALLKVNNINFEDPEKVRHRINFDNLTPL 139
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ K EI P + ++ + + + VA P++GK+++LQ++AHAI+ NH
Sbjct: 140 YPDEKLKLEIEDPTRKDLTTRVIDLVAPIGKGQRALIVAPPRTGKTVMLQNMAHAISLNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 200 PEVYLIVLLIDERPEEVTDMARSVKGEVISSTFDEPASRHVQVTEMVLEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|347530293|ref|YP_004837041.1| transcription termination factor Rho [Sphingobium sp. SYK-6]
gi|345138975|dbj|BAK68584.1| transcription termination factor Rho [Sphingobium sp. SYK-6]
Length = 418
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/345 (67%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I G G++EVL DGFGFLRS +NY+A DDIY+SP+Q+RRF L TGD VEGEIR PK
Sbjct: 46 GEQIMGLGTIEVLADGFGFLRSPEANYLAGPDDIYVSPNQVRRFGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ VN + P++ ++R FDNLTPL+P + L L+ + ++ + R+ID+I
Sbjct: 106 DGERYFALTKLVSVNFDDPDVVRHRVNFDNLTPLYPDEKLKLDTLDPTVKDKSARVIDII 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQR L+VA P++GK+++LQ+IA AIT NH E ++V+LIDERPEEVT+MQRSV+G
Sbjct: 166 APQGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL++ DKL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVEKDKLSKMWVLRRILMQM 390
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 174/306 (56%), Gaps = 88/306 (28%)
Query: 369 KNLLKDACMPLV-LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLP 427
K+L + A LV +AE +L V LRKQ+LMFAI K++ + GE+I G G++EVL
Sbjct: 4 KDLKRKAPAELVAMAE----ELGVEGASTLRKQDLMFAILKEQAENGEQIMGLGTIEVLA 59
Query: 428 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKV 487
DGFGFLRS +NY+A DDIY+SP+Q+RRF L TG +GEIR PK+GERYFAL K+ V
Sbjct: 60 DGFGFLRSPEANYLAGPDDIYVSPNQVRRFGLRTGDTVEGEIRAPKDGERYFALTKLVSV 119
Query: 488 NVASP--------------------------------KSGKSI----------------- 498
N P KS + I
Sbjct: 120 NFDDPDVVRHRVNFDNLTPLYPDEKLKLDTLDPTVKDKSARVIDIIAPQGKGQRALIVAP 179
Query: 499 -------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--- 548
+LQ+IA AIT NH E ++V+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 180 PRTGKTVLLQNIAKAITDNHPEVFLLVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRH 239
Query: 549 ------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKR 584
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKR
Sbjct: 240 VQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKR 299
Query: 585 FFGAAR 590
FFGAAR
Sbjct: 300 FFGAAR 305
>gi|444921230|ref|ZP_21241067.1| Transcription termination factor Rho [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507589|gb|ELV07764.1| Transcription termination factor Rho [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 418
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/347 (67%), Positives = 292/347 (84%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DG+GFLR S+YMA DD+Y+SPSQIR+FNL TGD V G+IR
Sbjct: 44 KNGEEITGDGVLEILNDGYGFLRGADSSYMAGPDDVYISPSQIRKFNLRTGDTVSGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ E+YF+L K+ +N E E S + F+NLTP+HP +LL +ER S E+IT R+ID
Sbjct: 104 PKDNEKYFSLAKVDTINYEPVENSTRKVAFENLTPIHPNELLKMERGNGSSEDITARLID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
++APIGKGQR L+VA PK+GK+++LQ+IA +I +NH E +IV+LIDERPEEVTEM+R V
Sbjct: 164 MVAPIGKGQRSLIVAPPKTGKTVMLQNIAQSIESNHPECYLIVLLIDERPEEVTEMRRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RG+VIASTFDEPA RHVQVAEMV+EKA+R+VE +DV+ILLDSITRLARAYN V+P+SGK
Sbjct: 224 RGDVIASTFDEPAVRHVQVAEMVIEKARRMVEHNRDVVILLDSITRLARAYNAVVPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VL+GGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLSGGVDANALHRPKRFFGAARNIENGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+R +AEKR++PAI++N+SGTR+EELL D L K+W+LRK+LY +
Sbjct: 344 HLDRSVAEKRIFPAIDINRSGTRKEELLTDPDDLTKMWILRKILYPM 390
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++++ + R +K +L+F+I K K GE I GDG LE+L DG+GFLR S+YMA DD+
Sbjct: 20 EMQLEGIARAKKHDLIFSILKAHAKNGEEITGDGVLEILNDGYGFLRGADSSYMAGPDDV 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL-------------------------- 481
Y+SPSQIR+FNL TG G+IR PK+ E+YF+L
Sbjct: 80 YISPSQIRKFNLRTGDTVSGKIRPPKDNEKYFSLAKVDTINYEPVENSTRKVAFENLTPI 139
Query: 482 -----LKIKKVN-------------------------VASPKSGKSIILQHIAHAITTNH 511
LK+++ N VA PK+GK+++LQ+IA +I +NH
Sbjct: 140 HPNELLKMERGNGSSEDITARLIDMVAPIGKGQRSLIVAPPKTGKTVMLQNIAQSIESNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVTEM+R VRG+VIASTFDEPA
Sbjct: 200 PECYLIVLLIDERPEEVTEMRRLVRGDVIASTFDEPAVRHVQVAEMVIEKARRMVEHNRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN V+P+SGKVL+GGVD+NAL RPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNAVVPSSGKVLSGGVDANALHRPKRFFGAAR 305
>gi|323135826|ref|ZP_08070909.1| transcription termination factor Rho [Methylocystis sp. ATCC 49242]
gi|322398917|gb|EFY01436.1| transcription termination factor Rho [Methylocystis sp. ATCC 49242]
Length = 422
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/339 (69%), Positives = 295/339 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+A DDIY+SPSQIR+F L TGD VEG IR PK GE
Sbjct: 52 IVGEGVVEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIRKFGLRTGDTVEGMIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + L LE +K++++ R+IDL+API
Sbjct: 112 RYFALLKVNSINFEDPEKVRHKVPFDNLTPLYPDERLKLEIEDPTKKDLSSRVIDLVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IA +ITTNH E +IV+LIDERPEEVT+MQRSVRGEV+
Sbjct: 172 GKGQRALVVAPPRTGKTVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVRGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE ++DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHRRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KRV+PAI++ +SGTR+EELL+ D L+K++VLR++L
Sbjct: 352 VADKRVFPAIDITRSGTRKEELLVAPDILKKMYVLRRIL 390
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/301 (38%), Positives = 153/301 (50%), Gaps = 87/301 (28%)
Query: 373 KDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGF-- 430
K A L AE EV + LRKQEL+FAI K+ I G+G +EVL DGF
Sbjct: 12 KSAAELLAFAEEH----EVENASLLRKQELLFAILKQFASRDVEIVGEGVVEVLQDGFGF 67
Query: 431 ----------------------------------GFLRS--QGSNYMA--SSDDI-YLSP 451
G +RS +G Y A + I + P
Sbjct: 68 LRSPDANYLAGPDDIYVSPSQIRKFGLRTGDTVEGMIRSPKEGERYFALLKVNSINFEDP 127
Query: 452 SQIRR---FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGK 496
++R F+ L+ K EI P + ++ + + + VA P++GK
Sbjct: 128 EKVRHKVPFDNLTPLYPDERLKLEIEDPTKKDLSSRVIDLVAPIGKGQRALVVAPPRTGK 187
Query: 497 SIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------- 548
+++LQ+IA +ITTNH E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 188 TVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAVRHVQVAE 247
Query: 549 -------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAA 589
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAA
Sbjct: 248 MVIEKAKRLVEHRRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAA 307
Query: 590 R 590
R
Sbjct: 308 R 308
>gi|146329362|ref|YP_001209641.1| transcription termination factor Rho [Dichelobacter nodosus
VCS1703A]
gi|146232832|gb|ABQ13810.1| transcription termination factor Rho [Dichelobacter nodosus
VCS1703A]
Length = 421
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/345 (69%), Positives = 291/345 (84%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I GDG LE+LPDG+GFLRS ++Y A DD+Y+SPS IRR NL TGD V G +R PK
Sbjct: 46 GEQIEGDGVLELLPDGYGFLRSAINSYQAGPDDLYVSPSIIRRCNLRTGDSVSGHLRPPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFAL KI +N + +K++ F+NLTPLH + L LE S E+IT R+IDLI
Sbjct: 106 DNERYFALTKIDTINFDPRAAAKHKIPFENLTPLHAESQLKLELGNGSSEDITARMIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+PIGKGQRGL+V+ PK+GK+++LQ+IA +IT NH E +IV+LIDERPEEVTEM+R+VRG
Sbjct: 166 SPIGKGQRGLIVSPPKAGKTVMLQNIAQSITINHPECYLIVLLIDERPEEVTEMERTVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAE+V+EKAKRLVE K+DV+IL DSITRLARAYNTV PASGK+L
Sbjct: 226 EVVSSTFDEPAQRHVQVAEIVMEKAKRLVEHKRDVVILCDSITRLARAYNTVAPASGKIL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARN EE GSLTIIATALI+TGS+MD+VIYEEFKGTGNMEVHL
Sbjct: 286 TGGVDANALQRPKRFFGAARNTEEAGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEVHL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
RR+AEKR++PAI++N SGTRREEL+I D LQK W+LRK+L+ +
Sbjct: 346 NRRIAEKRIFPAIDINPSGTRREELMIDPDMLQKTWILRKILHPM 390
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +IT NH E +IV+LIDERPEEVTEM+R+VRGEV++STFDEPA
Sbjct: 177 VSPPKAGKTVMLQNIAQSITINHPECYLIVLLIDERPEEVTEMERTVRGEVVSSTFDEPA 236
Query: 549 -----------------------LSVMC----KLARAYNTVIPASGKVLTGGVDSNALQR 581
+ ++C +LARAYNTV PASGK+LTGGVD+NALQR
Sbjct: 237 QRHVQVAEIVMEKAKRLVEHKRDVVILCDSITRLARAYNTVAPASGKILTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK L LAE ++ + + R RKQ+L+F+I K + GE+I GDG LE+LPDG+G
Sbjct: 8 LKSPQALLSLAE----EMGLEDISRKRKQDLIFSILKAHAQNGEQIEGDGVLELLPDGYG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS ++Y A DD+Y+SPS IRR NL TG G +R PK+ ERYFAL KI +N
Sbjct: 64 FLRSAINSYQAGPDDLYVSPSIIRRCNLRTGDSVSGHLRPPKDNERYFALTKIDTINFDP 123
Query: 492 PKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 529
+ K I +T H+E+ + + L + E++T
Sbjct: 124 RAAAKHKI---PFENLTPLHAESQLKLELGNGSSEDIT 158
>gi|110635802|ref|YP_676010.1| transcription termination factor Rho [Chelativorans sp. BNC1]
gi|110286786|gb|ABG64845.1| transcription termination factor Rho [Chelativorans sp. BNC1]
Length = 429
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/346 (68%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 60 IVGDGVVEVLQDGFGFLRSATANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 119
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + L +E + ++++ R+IDL+AP+
Sbjct: 120 RYFALLKVNTINFEDPEKIRHKIHFDNLTPLYPDERLRMEIENPTTKDLSPRVIDLVAPL 179
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 180 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVI 239
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 240 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 299
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 300 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 359
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR+YPA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 360 VADKRIYPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 405
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 188 VAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPA 247
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 248 ARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 307
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 308 PKRFFGAAR 316
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 74/105 (70%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK + I GDG +EVL DGFGFLRS +NY+ DDIY
Sbjct: 32 LEVENASIMRKQELMFAILKKLSMQDIEIVGDGVVEVLQDGFGFLRSATANYLPGPDDIY 91
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK 493
+SPSQIRRF+L TG +G IR PK GERYFALLK+ +N P+
Sbjct: 92 ISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFEDPE 136
>gi|319780611|ref|YP_004140087.1| transcription termination factor Rho [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166499|gb|ADV10037.1| transcription termination factor Rho [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 421
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/346 (67%), Positives = 293/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGDGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P K L +E + ++I+ R+IDL+API
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKIHFDNLTPLYPTKRLKMEIENVTTKDISARVIDLVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+ A P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRALINAQPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNCEIQLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR+YPA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIYPAMDILKSGTRKEDLLVSKQDLQKIFVLRRILAPMGTTD 397
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 174/302 (57%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
K+ P ++A +++++E SV +RKQELMFAI KK I GDG +EVL DGFG
Sbjct: 9 FKNKKPPELIAYAESLEVENASV--MRKQELMFAILKKLAAQEIEIIGDGVVEVLQDGFG 66
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFAL---------- 481
FLRS +NY+ DDIY+SPSQIRRF+L TG +G IR PK GERYFAL
Sbjct: 67 FLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFDD 126
Query: 482 ---------------------LKIKKVNV-------------------------ASPKSG 495
LK++ NV A P++G
Sbjct: 127 PEKIRHKIHFDNLTPLYPTKRLKMEIENVTTKDISARVIDLVAPIGKGQRALINAQPRTG 186
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 187 KTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAVRHVQVA 246
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 247 EMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 306
Query: 589 AR 590
AR
Sbjct: 307 AR 308
>gi|408376151|ref|ZP_11173756.1| transcription termination factor Rho [Agrobacterium albertimagni
AOL15]
gi|407749618|gb|EKF61129.1| transcription termination factor Rho [Agrobacterium albertimagni
AOL15]
Length = 418
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSARVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK++ILQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV+
Sbjct: 169 GKGQRGLIVAPPRTGKTVILQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 394
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 160/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 15 LTFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSANA 70
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQIR R
Sbjct: 71 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 130
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK++ILQ+
Sbjct: 131 VHFDNLTPLYPNERFKMELDVPTSKDLSARVIDLVAPLGKGQRGLIVAPPRTGKTVILQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 191 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAVRHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 251 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|384261328|ref|YP_005416514.1| Transcription termination factor Rho [Rhodospirillum photometricum
DSM 122]
gi|378402428|emb|CCG07544.1| Transcription termination factor Rho [Rhodospirillum photometricum
DSM 122]
Length = 504
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/342 (68%), Positives = 295/342 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR PK+GE
Sbjct: 135 IFGEGVLEILQDGFGFLRSPEANYLPGPDDIYISPSQVRRFGLRTGDTVEGQIRSPKDGE 194
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ K+N E PE ++R FDNLTPL+P + L LE + +++ T R+IDLI P+
Sbjct: 195 RYFALLKVNKINFEVPEAVRHRINFDNLTPLYPDERLKLEIDDPTRKEFTTRVIDLITPL 254
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IAHAIT N+ E +IV+LIDERPEEVT+M RSV GEV+
Sbjct: 255 GKGQRALIVAPPRTGKTVMLQNIAHAITANNPEVYLIVLLIDERPEEVTDMARSVNGEVV 314
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 315 SSTFDEPAARHVQVAEMVSEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 374
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQ+PKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 375 VDANALQKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 434
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LA++R++P+I++ +SGTR+EELL++ D L K+WVLR++L +
Sbjct: 435 LADRRIFPSIDITRSGTRKEELLVRRDVLSKMWVLRRILSPM 476
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAIT N+ E +IV+LIDERPEEVT+M RSV GEV++STFDEPA
Sbjct: 263 VAPPRTGKTVMLQNIAHAITANNPEVYLIVLLIDERPEEVTDMARSVNGEVVSSTFDEPA 322
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQ+
Sbjct: 323 ARHVQVAEMVSEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQK 382
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 383 PKRFFGAAR 391
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 78/106 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LE+ + LRKQ++MFAI K+ + IFG+G LE+L DGFGFLRS +NY+ DDIY
Sbjct: 107 LEIENASSLRKQDMMFAILKQLAENDTAIFGEGVLEILQDGFGFLRSPEANYLPGPDDIY 166
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+SPSQ+RRF L TG +G+IR PK+GERYFALLK+ K+N P++
Sbjct: 167 ISPSQVRRFGLRTGDTVEGQIRSPKDGERYFALLKVNKINFEVPEA 212
>gi|356960637|ref|ZP_09063619.1| transcription termination factor Rho [gamma proteobacterium SCGC
AAA001-B15]
Length = 420
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/358 (65%), Positives = 299/358 (83%), Gaps = 2/358 (0%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
E + GDG L++L +G+GFLRS +Y++ DDIY+SP+QIRRFNL TGD V G+IR PK
Sbjct: 47 EEVLGDGVLDILQEGYGFLRSSNDSYVSGPDDIYVSPNQIRRFNLSTGDVVAGKIRAPKK 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
GE+YFAL+K+ +VN ++PE +NR F +LTPLHP + L LE E+IT R+IDL+A
Sbjct: 107 GEKYFALVKVSEVNEDQPENVRNRIPFASLTPLHPNERLNLELGNGGTEDITARVIDLVA 166
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
P GKGQRGL+V+ PK+GK++I+Q+IA +I+ NH + +IV+LIDERPEEVTEM+R+VRGE
Sbjct: 167 PFGKGQRGLIVSPPKAGKTMIMQNIASSISVNHPDCELIVLLIDERPEEVTEMERTVRGE 226
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VI+STFDEPA RHVQVAE+V+ KAKR E K+VIILLDSITRLARAYNTV P+SGKVLT
Sbjct: 227 VISSTFDEPAKRHVQVAEIVIAKAKRRAEQGKNVIILLDSITRLARAYNTVAPSSGKVLT 286
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIE GGS+TIIATALI+TGS+MD+VIY+EFKGTGNME+HLE
Sbjct: 287 GGVDANALQRPKRFFGAARNIENGGSITIIATALIDTGSKMDEVIYQEFKGTGNMELHLE 346
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKR 363
RRL+EKR++PAIN+N SGTRREEL+ + +LQK+W+LRK+L+ M + + F I+R
Sbjct: 347 RRLSEKRIFPAININASGTRREELITDEQELQKMWILRKILHP--MDTVEAAEFLIER 402
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++I+Q+IA +I+ NH + +IV+LIDERPEEVTEM+R+VRGEVI+STFDEPA
Sbjct: 177 VSPPKAGKTMIMQNIASSISVNHPDCELIVLLIDERPEEVTEMERTVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV P+SGKVLTGGVD+NALQR
Sbjct: 237 KRHVQVAEIVIAKAKRRAEQGKNVIILLDSITRLARAYNTVAPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 76/106 (71%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ R +KQ L+FAI K K E + GDG L++L +G+GFLRS +Y++ DDIY
Sbjct: 21 LGIENISRAKKQTLIFAILKHKADNDEEVLGDGVLDILQEGYGFLRSSNDSYVSGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+SP+QIRRFNL TG + G+IR PK GE+YFAL+K+ +VN P++
Sbjct: 81 VSPNQIRRFNLSTGDVVAGKIRAPKKGEKYFALVKVSEVNEDQPEN 126
>gi|23014742|ref|ZP_00054544.1| COG1158: Transcription termination factor [Magnetospirillum
magnetotacticum MS-1]
Length = 418
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/342 (68%), Positives = 294/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD V+G+IR PK+GE
Sbjct: 49 IYGDGVLEILQDGFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVDGQIRSPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE ++R FDNLTPL+P + L LE +++++T R+IDL+API
Sbjct: 109 RYFALLKVNNINFEDPEKVRHRINFDNLTPLYPDEKLKLEIEDPTRKDLTTRVIDLVAPI 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ++AHAI+ NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 169 GKGQRALIVAPPRTGKTVMLQNMAHAISLNHPEVYLIVLLIDERPEEVTDMARSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPASRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L++KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 349 LSDKRTFPAIDITKSGTRKEELLVDKGILSKMWVLRRILMPM 390
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 151/286 (52%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGF----------------- 430
+LEV + LRKQ++MFAI K+ I+GDG LE+L DGF
Sbjct: 20 ELEVENASTLRKQDMMFAILKQLADNDTPIYGDGVLEILQDGFGFLRSPEANYLPGPDDI 79
Query: 431 -------------------GFLRS--QGSNYMA--SSDDI-YLSPSQIR-RFN------L 459
G +RS G Y A ++I + P ++R R N L
Sbjct: 80 YVSPSQVRRFGLRTGDTVDGQIRSPKDGERYFALLKVNNINFEDPEKVRHRINFDNLTPL 139
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ K EI P + ++ + + + VA P++GK+++LQ++AHAI+ NH
Sbjct: 140 YPDEKLKLEIEDPTRKDLTTRVIDLVAPIGKGQRALIVAPPRTGKTVMLQNMAHAISLNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 200 PEVYLIVLLIDERPEEVTDMARSVKGEVISSTFDEPASRHVQVTEMVLEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|452965402|gb|EME70425.1| transcription termination factor Rho [Magnetospirillum sp. SO-1]
Length = 418
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/342 (68%), Positives = 294/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD V+G+IR PK+GE
Sbjct: 49 IYGDGVLEILQDGFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVDGQIRSPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE ++R FDNLTPL+P + L LE +++++T R+IDL+API
Sbjct: 109 RYFALLKVNNINFEDPEKVRHRINFDNLTPLYPDEKLKLEIEDPTRKDLTTRVIDLVAPI 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ++AHAI+ NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 169 GKGQRALIVAPPRTGKTVMLQNMAHAISLNHPEVYLIVLLIDERPEEVTDMARSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPASRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L++KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 349 LSDKRTFPAIDITKSGTRKEELLVDKGILSKMWVLRRILMPM 390
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 151/286 (52%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGF----------------- 430
+LEV + LRKQ++MFAI K+ I+GDG LE+L DGF
Sbjct: 20 ELEVENASTLRKQDMMFAILKQLADNDTPIYGDGVLEILQDGFGFLRSPEANYLPGPDDI 79
Query: 431 -------------------GFLRS--QGSNYMA--SSDDI-YLSPSQIR-RFN------L 459
G +RS G Y A ++I + P ++R R N L
Sbjct: 80 YVSPSQVRRFGLRTGDTVDGQIRSPKDGERYFALLKVNNINFEDPEKVRHRINFDNLTPL 139
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ K EI P + ++ + + + VA P++GK+++LQ++AHAI+ NH
Sbjct: 140 YPDEKLKLEIEDPTRKDLTTRVIDLVAPIGKGQRALIVAPPRTGKTVMLQNMAHAISLNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 200 PEVYLIVLLIDERPEEVTDMARSVKGEVISSTFDEPASRHVQVTEMVLEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|298293759|ref|YP_003695698.1| transcription termination factor Rho [Starkeya novella DSM 506]
gi|296930270|gb|ADH91079.1| transcription termination factor Rho [Starkeya novella DSM 506]
Length = 421
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/339 (69%), Positives = 296/339 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +E+L DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD VEG+IR PK+GE
Sbjct: 52 IIGEGVVEILSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKDGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E P+ +++ FDNLTPL+P + L LE ++++ + R+ID++API
Sbjct: 112 RYFALLKVNTINFEDPDKIRHKINFDNLTPLYPDERLKLEIEDPTRKDFSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IA +ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGN EV L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEVILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KRV+PAI++ +SGTR+EELL+ D L+K++VLR++L
Sbjct: 352 VSDKRVFPAIDITRSGTRKEELLVPADVLKKMYVLRRIL 390
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 173/301 (57%), Gaps = 87/301 (28%)
Query: 373 KDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGF 432
K+ LV AE +LEV + LRKQELMFAI K+ I G+G +E+L DGFGF
Sbjct: 12 KNPAELLVFAE----ELEVENASTLRKQELMFAILKQLAARETDIIGEGVVEILSDGFGF 67
Query: 433 LRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------- 485
LRS +NY+ DDIY+SPSQIRRF L TG +G+IR PK+GERYFALLK+
Sbjct: 68 LRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKDGERYFALLKVNTINFEDP 127
Query: 486 -----KVN--------------------------------------------VASPKSGK 496
K+N VA P++GK
Sbjct: 128 DKIRHKINFDNLTPLYPDERLKLEIEDPTRKDFSARVIDIVAPIGKGQRGLIVAPPRTGK 187
Query: 497 SIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------- 548
+++LQ+IA +ITTNH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 188 TVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHVQVAE 247
Query: 549 -------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAA 589
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAA
Sbjct: 248 MVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAA 307
Query: 590 R 590
R
Sbjct: 308 R 308
>gi|258545113|ref|ZP_05705347.1| transcription termination factor rho [Cardiobacterium hominis ATCC
15826]
gi|258519632|gb|EEV88491.1| transcription termination factor rho [Cardiobacterium hominis ATCC
15826]
Length = 420
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/361 (67%), Positives = 298/361 (82%), Gaps = 2/361 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG+LE+L DG+GFLR++ ++Y A+ DDIY++P IRR NL TGD + G+IR
Sbjct: 44 KGGEEISGDGTLELLQDGYGFLRAEVNSYQANPDDIYVAPGLIRRCNLRTGDTITGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK ERYFAL KI +N ++ ++++ F+NLTPLH ++L LE S E+IT R+ID
Sbjct: 104 PKENERYFALTKIDTINYDERGAARHKIPFENLTPLHADEMLKLELGNGSSEDITPRMID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LIAPIGKGQRGL+V+ PK+GK+++LQ+IA +I+ NH E +IV+LIDERPEEVTEMQRSV
Sbjct: 164 LIAPIGKGQRGLIVSPPKAGKTVMLQNIAQSISQNHPECYLIVLLIDERPEEVTEMQRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEVI+STFDEPA RHVQVAEMV+EKAKRLVE KKDVIIL DSITRLARAYNT+ PAS K
Sbjct: 224 RGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVIILCDSITRLARAYNTITPASSK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+L+GGVD++ALQRPKRFFGAARN EE GSLTIIATALI+TGS+MD+VIYEEFKGTGNMEV
Sbjct: 284 ILSGGVDASALQRPKRFFGAARNTEEAGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEV 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL RR+AEKR++PAI++N SGTRREEL+I D LQK W+LRK+L+ M S F ++
Sbjct: 344 HLNRRIAEKRIFPAIDINPSGTRREELMIDPDVLQKTWILRKILHP--MDELQASEFLLE 401
Query: 363 R 363
R
Sbjct: 402 R 402
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IA +I+ NH E +IV+LIDERPEEVTEMQRSVRGEVI+STFDEPA
Sbjct: 177 VSPPKAGKTVMLQNIAQSISQNHPECYLIVLLIDERPEEVTEMQRSVRGEVISSTFDEPA 236
Query: 549 -----------------------LSVMC----KLARAYNTVIPASGKVLTGGVDSNALQR 581
+ ++C +LARAYNT+ PAS K+L+GGVD++ALQR
Sbjct: 237 QRHVQVAEMVIEKAKRLVEHKKDVIILCDSITRLARAYNTITPASSKILSGGVDASALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 4/110 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE+ +D + R RKQ+L+F+I K K GE I GDG+LE+L DG+GFLR++ +
Sbjct: 15 LELAESMGLD----DISRKRKQDLIFSILKAHAKGGEEISGDGTLELLQDGYGFLRAEVN 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
+Y A+ DDIY++P IRR NL TG G+IR PK ERYFAL KI +N
Sbjct: 71 SYQANPDDIYVAPGLIRRCNLRTGDTITGKIRPPKENERYFALTKIDTIN 120
>gi|390450535|ref|ZP_10236126.1| transcription termination factor Rho [Nitratireductor aquibiodomus
RA22]
gi|389662438|gb|EIM74004.1| transcription termination factor Rho [Nitratireductor aquibiodomus
RA22]
Length = 418
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/345 (68%), Positives = 296/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSATANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + L +E +K++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFEDPEKIRHKIHFDNLTPLYPDERLNMEIEDPTKKDLSARVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT+NH E +IV+LIDERPEEVT+MQRSV GEVI
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITSNHPECFLIVLLIDERPEEVTDMQRSVNGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPASRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PAI++ KSGTR+E+LLI LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAIDILKSGTRKEDLLIPRQDLQKIFVLRRILAPMGTT 393
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+IT+NH E +IV+LIDERPEEVT+MQRSV GEVI+STFDEPA
Sbjct: 177 VAPPRTGKTVLLQNIAHSITSNHPECFLIVLLIDERPEEVTDMQRSVNGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK + I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 21 LEVENASIMRKQELMFAILKKLSTQDIEIIGEGVVEVLQDGFGFLRSATANYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK 493
+SPSQIRRF+L TG +G IR PK GERYFALLK+ +N P+
Sbjct: 81 ISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFEDPE 125
>gi|103488322|ref|YP_617883.1| transcription termination factor Rho [Sphingopyxis alaskensis
RB2256]
gi|98978399|gb|ABF54550.1| transcription termination factor Rho [Sphingopyxis alaskensis
RB2256]
Length = 418
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/345 (66%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I G G++EVLPD FGFLRS +NY+A DDIY+SP+Q+R++ L TGD VEGEIR P+
Sbjct: 46 GEEIIGSGTIEVLPDSFGFLRSSEANYLAGPDDIYVSPNQVRKYGLRTGDTVEGEIRAPR 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ VN + P++ ++R FDNLTPL+P + L L+ + ++ + R+IDL+
Sbjct: 106 DGERYFALTKLISVNFDDPDVVRHRVNFDNLTPLYPNQKLSLDTVDPTVKDKSARVIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ+IA AIT NH E +IV+L+DERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVYLIVLLVDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL++ DKL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVEKDKLSKMWVLRRILMQM 390
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/286 (44%), Positives = 161/286 (56%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V +RKQ+LMF+I K+ + GE I G G++EVLPD FGFLRS +NY+A DDI
Sbjct: 20 ELGVEGASTMRKQDLMFSILKELAEEGEEIIGSGTIEVLPDSFGFLRSSEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP--------------- 492
Y+SP+Q+R++ L TG +GEIR P++GERYFAL K+ VN P
Sbjct: 80 YVSPNQVRKYGLRTGDTVEGEIRAPRDGERYFALTKLISVNFDDPDVVRHRVNFDNLTPL 139
Query: 493 -----------------KSGKSIIL------------------------QHIAHAITTNH 511
KS + I L Q+IA AIT NH
Sbjct: 140 YPNQKLSLDTVDPTVKDKSARVIDLVSPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+L+DERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 200 PEVYLIVLLVDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|393720395|ref|ZP_10340322.1| transcription termination factor Rho [Sphingomonas echinoides ATCC
14820]
Length = 418
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/345 (67%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GEQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDIYISPNQVRKFGLRTGDTVEGEIRGPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL+K+ VN + PE ++R FDNLTPL+P + L L+ + + ++ + R+ID+I
Sbjct: 106 DGERYFALVKLTAVNFDDPEAVRHRVNFDNLTPLYPDEKLTLDPSDPTIKDKSARVIDII 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRTLIVAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ KL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVDQSKLSKMWVLRRILMQM 390
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 153/286 (53%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + S LRKQ+LMFAI K + + GE+I G G++EVLPDGFGFLRS +NY+A DDI
Sbjct: 20 ELGIESASTLRKQDLMFAILKVQAEEGEQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS------------- 494
Y+SP+Q+R+F L TG +GEIR PK+GERYFAL+K+ VN P++
Sbjct: 80 YISPNQVRKFGLRTGDTVEGEIRGPKDGERYFALVKLTAVNFDDPEAVRHRVNFDNLTPL 139
Query: 495 --GKSIILQHIAHAITTNHSEAIMIV----------------------------MLIDER 524
+ + L I + I I+ + D
Sbjct: 140 YPDEKLTLDPSDPTIKDKSARVIDIISPQGKGQRTLIVAPPRVGKTVMLQNIAKAITDNH 199
Query: 525 PE-------------EVTEMQRSVRGEVIASTFDEPA----------------------- 548
PE EVT+MQRSV+GEV++STFDEPA
Sbjct: 200 PEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|154251713|ref|YP_001412537.1| transcription termination factor Rho [Parvibaculum lavamentivorans
DS-1]
gi|154155663|gb|ABS62880.1| transcription termination factor Rho [Parvibaculum lavamentivorans
DS-1]
Length = 422
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/339 (69%), Positives = 296/339 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVLPDGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEGEIR PK+GE
Sbjct: 53 IIGEGVVEVLPDGFGFLRSPEANYLPGPDDIYVSPSQIRRFSLRTGDTVEGEIRSPKDGE 112
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ VN E P+ ++++ FDNLTPL+P + L +E + ++ + R+ID++AP+
Sbjct: 113 RYFALLKVSTVNFESPDKARHKVHFDNLTPLYPDEKLEMEVADPTLKDRSSRLIDIVAPL 172
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 173 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVI 232
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 233 SSTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 292
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 293 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 352
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KRV+PA+++ KSGTR+EELL+ L K++VLR++L
Sbjct: 353 IADKRVFPAMDILKSGTRKEELLVDKGTLSKMYVLRRIL 391
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 151/286 (52%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGF----------------- 430
+LEV + LR Q++MFAI K+ + I G+G +EVLPDGF
Sbjct: 24 ELEVENASTLRTQDMMFAILKQYAEQNIDIIGEGVVEVLPDGFGFLRSPEANYLPGPDDI 83
Query: 431 -------------------GFLRS--QGSNYMA---SSDDIYLSPSQIRR---FN----L 459
G +RS G Y A S + SP + R F+ L
Sbjct: 84 YVSPSQIRRFSLRTGDTVEGEIRSPKDGERYFALLKVSTVNFESPDKARHKVHFDNLTPL 143
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ + E+ P +R L+ I + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 YPDEKLEMEVADPTLKDRSSRLIDIVAPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNH 203
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 204 PECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHGRD 263
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 309
>gi|158520487|ref|YP_001528357.1| transcription termination factor Rho [Desulfococcus oleovorans
Hxd3]
gi|158509313|gb|ABW66280.1| transcription termination factor Rho [Desulfococcus oleovorans
Hxd3]
Length = 414
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/343 (68%), Positives = 296/343 (86%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+ +LEVL DGFGFLRS S+Y+ DDIY+SPSQIRRFNL TGD V G+IR PK E
Sbjct: 48 IFGESTLEVLSDGFGFLRSPDSSYLPGLDDIYVSPSQIRRFNLRTGDIVSGQIRQPKENE 107
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ +N E PE+++++T FDNLTPL P + + LER +N + RI+DL+ PI
Sbjct: 108 RYFALLKVEAINHEDPEIARHKTPFDNLTPLFPNEKIKLER---ESDNYSMRIMDLLTPI 164
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
G GQRGL+V+ P++GK+++LQ+IA++I +H + + V+LIDERPEEVT+M+RSV EVI
Sbjct: 165 GFGQRGLIVSPPRAGKTMLLQNIANSIIASHKKVVPFVLLIDERPEEVTDMKRSVNAEVI 224
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKA+RLVE KKDV+ILLDSITRLARAYN+V+P+SGKVL+GG
Sbjct: 225 SSTFDEPADRHVQVAEMVIEKARRLVEHKKDVVILLDSITRLARAYNSVVPSSGKVLSGG 284
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL RPKRFFGAARNIEEGGSLTI+ATALI+TGSRMDDVI+EEFKGTGNME+HL+R+
Sbjct: 285 VDSNALHRPKRFFGAARNIEEGGSLTIMATALIDTGSRMDDVIFEEFKGTGNMELHLDRK 344
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LA++RVYPAI++N+SGTR+EELL++ D L ++WVLRKLL +L
Sbjct: 345 LADRRVYPAIDINRSGTRKEELLVEKDVLNRVWVLRKLLATLN 387
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/281 (43%), Positives = 163/281 (58%), Gaps = 81/281 (28%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
EV+S ++KQEL+F+I + + + IFG+ +LEVL DGFGFLRS S+Y+ DDIY+
Sbjct: 22 EVDSAG-MKKQELIFSILQAEAENNGYIFGESTLEVLSDGFGFLRSPDSSYLPGLDDIYV 80
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--------------------- 488
SPSQIRRFNL TG + G+IR PK ERYFALLK++ +N
Sbjct: 81 SPSQIRRFNLRTGDIVSGQIRQPKENERYFALLKVEAINHEDPEIARHKTPFDNLTPLFP 140
Query: 489 --------------------------------VASPKSGKSIILQHIAHAITTNHSEAIM 516
V+ P++GK+++LQ+IA++I +H + +
Sbjct: 141 NEKIKLERESDNYSMRIMDLLTPIGFGQRGLIVSPPRAGKTMLLQNIANSIIASHKKVVP 200
Query: 517 IVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------L 549
V+LIDERPEEVT+M+RSV EVI+STFDEPA L
Sbjct: 201 FVLLIDERPEEVTDMKRSVNAEVISSTFDEPADRHVQVAEMVIEKARRLVEHKKDVVILL 260
Query: 550 SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +LARAYN+V+P+SGKVL+GGVDSNAL RPKRFFGAAR
Sbjct: 261 DSITRLARAYNSVVPSSGKVLSGGVDSNALHRPKRFFGAAR 301
>gi|209966063|ref|YP_002298978.1| transcription termination factor Rho [Rhodospirillum centenum SW]
gi|209959529|gb|ACJ00166.1| transcription termination factor Rho [Rhodospirillum centenum SW]
Length = 422
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/343 (68%), Positives = 293/343 (85%), Gaps = 4/343 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LEVL DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR PK GE
Sbjct: 49 IYGEGVLEVLSDGFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIES----KENITGRIIDL 123
RYFALLK+ +N + P+ ++R FDNLTPL+P L LE ++S K+++T R+IDL
Sbjct: 109 RYFALLKVNSINFDHPDKVRHRINFDNLTPLYPDDRLRLEIEVDSSGKSKKDMTTRVIDL 168
Query: 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR 183
+AP+GKGQR L+VA P++GK+++LQ+IAH+I TNH E +IV+LIDERPEEVT+M RSVR
Sbjct: 169 VAPLGKGQRALIVAPPRTGKTVMLQNIAHSIATNHPEVYLIVLLIDERPEEVTDMARSVR 228
Query: 184 GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKV 243
GEVI+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKV
Sbjct: 229 GEVISSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKV 288
Query: 244 LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVH 303
LTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+
Sbjct: 289 LTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEII 348
Query: 304 LERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R+L++KRV+PAI++ KSGTR+EELL+ + K+W+LR++L
Sbjct: 349 LDRKLSDKRVFPAIDIQKSGTRKEELLVDKGAMAKMWILRRIL 391
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 163/290 (56%), Gaps = 87/290 (30%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L++ + LRKQ++MFAI K+ + I+G+G LEVL DGFGFLRS +NY+ DDI
Sbjct: 20 ELQIENAGTLRKQDMMFAILKQLAENDVPIYGEGVLEVLSDGFGFLRSPEANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP--------------- 492
Y+SPSQ+RRF L TG +G+IR PK GERYFALLK+ +N P
Sbjct: 80 YVSPSQVRRFGLRTGDTVEGQIRSPKEGERYFALLKVNSINFDHPDKVRHRINFDNLTPL 139
Query: 493 -------------KSGKS--------------------------------IILQHIAHAI 507
SGKS ++LQ+IAH+I
Sbjct: 140 YPDDRLRLEIEVDSSGKSKKDMTTRVIDLVAPLGKGQRALIVAPPRTGKTVMLQNIAHSI 199
Query: 508 TTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------- 548
TNH E +IV+LIDERPEEVT+M RSVRGEVI+STFDEPA
Sbjct: 200 ATNHPEVYLIVLLIDERPEEVTDMARSVRGEVISSTFDEPATRHVQVTEMVLEKAKRLVE 259
Query: 549 --------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 HKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 309
>gi|157803727|ref|YP_001492276.1| transcription termination factor Rho [Rickettsia canadensis str.
McKiel]
gi|379022893|ref|YP_005299554.1| transcription termination factor Rho [Rickettsia canadensis str.
CA410]
gi|157784990|gb|ABV73491.1| transcription termination factor Rho [Rickettsia canadensis str.
McKiel]
gi|376323831|gb|AFB21072.1| transcription termination factor Rho [Rickettsia canadensis str.
CA410]
Length = 458
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P KKL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDKKLGLELENNSKDTKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QVQAEELKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|452751479|ref|ZP_21951225.1| Transcription termination factor Rho [alpha proteobacterium
JLT2015]
gi|451961629|gb|EMD84039.1| Transcription termination factor Rho [alpha proteobacterium
JLT2015]
Length = 418
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G G++EVLPDGFGFLRS +NY+A DDIY++P+Q+RRF+L TGD +EGEIR PK
Sbjct: 46 GAEIMGAGTIEVLPDGFGFLRSPEANYLAGPDDIYVAPNQVRRFSLRTGDTIEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ K+N + P++ + R FDNLTPL+P + L L+ N + ++ + R+ID+I
Sbjct: 106 DGERYFALTKVVKINFDDPDVVRQRVNFDNLTPLYPDEKLNLDINDPTVKDKSSRVIDVI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQR L+VA P++GK+++LQ+IA AIT NH E ++V+LIDERPEEVT+MQRSVRG
Sbjct: 166 APQGKGQRSLIVAPPRTGKTVLLQNIARAITENHPEVFLLVLLIDERPEEVTDMQRSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ D L K++VLR++L +
Sbjct: 346 DRKVADKRIFPAMDVGKSGTRKEELLVDKDTLSKMYVLRRILMQM 390
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 168/286 (58%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ V + LRKQ+L+F I K + G I G G++EVLPDGFGFLRS +NY+A DDI
Sbjct: 20 EMGVENASTLRKQDLLFGILKAEADEGAEIMGAGTIEVLPDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKI------------KKVN------- 488
Y++P+Q+RRF+L TG +GEIR PK+GERYFAL K+ ++VN
Sbjct: 80 YVAPNQVRRFSLRTGDTIEGEIRAPKDGERYFALTKVVKINFDDPDVVRQRVNFDNLTPL 139
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK+++LQ+IA AIT NH
Sbjct: 140 YPDEKLNLDINDPTVKDKSSRVIDVIAPQGKGQRSLIVAPPRTGKTVLLQNIARAITENH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E ++V+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 200 PEVFLLVLLIDERPEEVTDMQRSVRGEVVSSTFDEPATRHVQVADMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|357973983|ref|ZP_09137954.1| transcription termination factor Rho [Sphingomonas sp. KC8]
Length = 418
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/345 (67%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GEQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDIYISPNQVRKFGLRTGDTVEGEIRGPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL ++ VN + P++ ++R FDNLTPL+P++ L L+ + ++ + R+ID++
Sbjct: 106 DGERYFALTRLVSVNFDDPDVVRHRVNFDNLTPLYPEQKLTLDPQDPTVKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 APQGKGQRALIVAPPRVGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ KL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPAMDVGKSGTRKEELLVDKGKLSKMWVLRRILMQM 390
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 177 VAPPRVGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 QRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 77/105 (73%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V LRKQ+LMFAI K + + GE+I G G++EVLPDGFGFLRS +NY+A DDI
Sbjct: 20 ELGVEGASTLRKQDLMFAILKVQAENGEQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
Y+SP+Q+R+F L TG +GEIR PK+GERYFAL ++ VN P
Sbjct: 80 YISPNQVRKFGLRTGDTVEGEIRGPKDGERYFALTRLVSVNFDDP 124
>gi|395785261|ref|ZP_10464993.1| transcription termination factor Rho [Bartonella tamiae Th239]
gi|423717840|ref|ZP_17692030.1| transcription termination factor Rho [Bartonella tamiae Th307]
gi|395424808|gb|EJF90979.1| transcription termination factor Rho [Bartonella tamiae Th239]
gi|395427240|gb|EJF93356.1| transcription termination factor Rho [Bartonella tamiae Th307]
Length = 424
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/346 (68%), Positives = 297/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSPSQIRRF+L TGD VEG IR PK GE
Sbjct: 55 IIGEGVVEVLLDGFGFLRSADANYLPGPDDIYLSPSQIRRFSLKTGDTVEGPIRGPKEGE 114
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N E PE +++ FDNLTPL+P + L +E + ++++GR+IDL++P+
Sbjct: 115 RYFALLKINSINFEDPEKIRHKIHFDNLTPLYPNERLAMELEDPTGKDMSGRVIDLVSPL 174
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 175 GKGQRGLIVAPPRTGKTVLLQNIAHSITVNHPECYLIVLLIDERPEEVTDMQRSVQGEVI 234
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 235 SSTFDEPAIRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 294
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 295 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 354
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LLI+ LQKI+VLR++L + T
Sbjct: 355 VADKRIFPAMDILKSGTRKEDLLIERQDLQKIFVLRRILSPMGTTD 400
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 139/295 (47%), Positives = 165/295 (55%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
+ AET LEV + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +
Sbjct: 21 VAFAET----LEVENASLMRKQELMFAILKRLALQDVEIIGEGVVEVLLDGFGFLRSADA 76
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
NY+ DDIYLSPSQIRRF+L TG +G IR PK GERYFALLKI +N P+
Sbjct: 77 NYLPGPDDIYLSPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKINSINFEDPEKIRHK 136
Query: 494 ---------------------------SGKSI------------------------ILQH 502
SG+ I +LQ+
Sbjct: 137 IHFDNLTPLYPNERLAMELEDPTGKDMSGRVIDLVSPLGKGQRGLIVAPPRTGKTVLLQN 196
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 197 IAHSITVNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDEPAIRHVQVAEMVIEKA 256
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 257 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 311
>gi|409402554|ref|ZP_11252096.1| transcription termination factor Rho [Acidocella sp. MX-AZ02]
gi|409128911|gb|EKM98788.1| transcription termination factor Rho [Acidocella sp. MX-AZ02]
Length = 424
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/353 (67%), Positives = 295/353 (83%), Gaps = 10/353 (2%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG+LE+LPDGFGFLR+ +N++ DDIY+SP Q+RR+ L TGD V+GEIR PK GE
Sbjct: 49 IHGDGTLEILPDGFGFLRNPEANFLPGPDDIYVSPQQVRRYGLRTGDTVDGEIRAPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKE--------NITGR 119
RYF+L+ ++K+N E PE K+R FDNLTPL+P L +E +E+ E +TGR
Sbjct: 109 RYFSLVNVEKINFESPEAVKHRINFDNLTPLYPTSRLRME--VEAPEPTVKGQQKEVTGR 166
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
+IDL+APIGKGQR L+VA P++GK+++LQ+IA +IT NH E +IV+LIDERPEEVT+M
Sbjct: 167 VIDLVAPIGKGQRALVVAPPRTGKTVMLQNIAASITANHPEVFLIVLLIDERPEEVTDMA 226
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RSVRGEV+ASTFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+
Sbjct: 227 RSVRGEVVASTFDEPASRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPS 286
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN
Sbjct: 287 SGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGN 346
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
E+ L+R+L++KR +PAI++ KSGTR+EELL++ L K+WVLR++L + T
Sbjct: 347 AELILDRKLSDKRTFPAIDITKSGTRKEELLVEKAVLSKMWVLRRILNPMGTT 399
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IA +IT NH E +IV+LIDERPEEVT+M RSVRGEV+ASTFDEPA
Sbjct: 183 VAPPRTGKTVMLQNIAASITANHPEVFLIVLLIDERPEEVTDMARSVRGEVVASTFDEPA 242
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 243 SRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 302
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 303 PKRFFGAAR 311
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 84/121 (69%), Gaps = 4/121 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE +LEV + LRKQE+MFAI K + + I GDG+LE+LPDGFGFLR+ +
Sbjct: 15 LALAE----ELEVENASSLRKQEIMFAILKAHAENEQAIHGDGTLEILPDGFGFLRNPEA 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
N++ DDIY+SP Q+RR+ L TG GEIR PK GERYF+L+ ++K+N SP++ K
Sbjct: 71 NFLPGPDDIYVSPQQVRRYGLRTGDTVDGEIRAPKEGERYFSLVNVEKINFESPEAVKHR 130
Query: 499 I 499
I
Sbjct: 131 I 131
>gi|357028651|ref|ZP_09090681.1| transcription termination factor Rho [Mesorhizobium amorphae
CCNWGS0123]
gi|355537918|gb|EHH07168.1| transcription termination factor Rho [Mesorhizobium amorphae
CCNWGS0123]
Length = 418
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/346 (68%), Positives = 294/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGDGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P K L +E + + ++I+ R+IDL+API
Sbjct: 109 RYFALLKVNTINFDDPEKIRHKIHFDNLTPLYPTKRLKMEIDNPTSKDISPRVIDLVAPI 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+ A P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 169 GKGQRALINAQPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNCEIQLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR+YPA+++ KSGTR+E+LLI LQKI+VLR++L + T
Sbjct: 349 VADKRIYPAMDILKSGTRKEDLLIPRADLQKIFVLRRILAPMGTTD 394
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 92/128 (71%), Gaps = 27/128 (21%)
Query: 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA- 548
A P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 178 AQPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAV 237
Query: 549 --------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRP 582
L + +L RAYNTV+P+SGKVLTGGVD+NALQRP
Sbjct: 238 RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP 297
Query: 583 KRFFGAAR 590
KRFFGAAR
Sbjct: 298 KRFFGAAR 305
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 83/122 (68%), Gaps = 2/122 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
K+ P ++A +++++E SV +RKQELMFAI KK I GDG +EVL DGFG
Sbjct: 6 FKNKKPPELIAYAESLEVENASV--MRKQELMFAILKKLAAQDIEIIGDGVVEVLQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS +NY+ DDIY+SPSQIRRF+L TG +G IR PK GERYFALLK+ +N
Sbjct: 64 FLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFDD 123
Query: 492 PK 493
P+
Sbjct: 124 PE 125
>gi|407781155|ref|ZP_11128375.1| transcription termination factor Rho [Oceanibaculum indicum P24]
gi|407208581|gb|EKE78499.1| transcription termination factor Rho [Oceanibaculum indicum P24]
Length = 418
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/342 (69%), Positives = 290/342 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG+G LE L DGFGFLRS SNY+ DDIY+SPSQ+RRF L TGD V G+IR PK+GE
Sbjct: 49 IFGEGVLETLQDGFGFLRSPESNYLPGPDDIYVSPSQVRRFGLRTGDTVSGQIRAPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ ++N E PE ++R FDNLTPL+P + L E + + ++ T R+IDLI+P+
Sbjct: 109 RYFALLKVNEINFEPPEAVRHRINFDNLTPLYPDEKLKFEIDDPTAKDPTTRVIDLISPM 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IAHAI NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 169 GKGQRALVVAPPRTGKTVMLQNIAHAIAANHPEVYLIVLLIDERPEEVTDMDRSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPASRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LA+KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 349 LADKRSFPAIDITKSGTRKEELLVDKGTLSKMWVLRRVLMPM 390
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 147/286 (51%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF--------------- 430
+LEV + LRKQ++MFAI K+ + IFG+G LE L D GF
Sbjct: 20 ELEVENASTLRKQDMMFAILKRLAEKDIPIFGEGVLETLQDGFGFLRSPESNYLPGPDDI 79
Query: 431 -------------------GFLRS--QGSNYMA--SSDDIYLSPSQIRRFNLHTGIL--- 464
G +R+ G Y A ++I P + R ++ L
Sbjct: 80 YVSPSQVRRFGLRTGDTVSGQIRAPKDGERYFALLKVNEINFEPPEAVRHRINFDNLTPL 139
Query: 465 -----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
K EI P + ++ + + + VA P++GK+++LQ+IAHAI NH
Sbjct: 140 YPDEKLKFEIDDPTAKDPTTRVIDLISPMGKGQRALVVAPPRTGKTVMLQNIAHAIAANH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 200 PEVYLIVLLIDERPEEVTDMDRSVKGEVISSTFDEPASRHVQVTEMVLEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|337265430|ref|YP_004609485.1| transcription termination factor Rho [Mesorhizobium opportunistum
WSM2075]
gi|336025740|gb|AEH85391.1| transcription termination factor Rho [Mesorhizobium opportunistum
WSM2075]
Length = 421
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/346 (67%), Positives = 294/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGDGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P K L +E + + ++I+ R+IDL+API
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKIHFDNLTPLYPTKRLKMEIDNPTSKDISPRVIDLVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+ A P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRALINAQPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNCEIQLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR+YPA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIYPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 397
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 92/128 (71%), Gaps = 27/128 (21%)
Query: 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA- 548
A P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 181 AQPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAV 240
Query: 549 --------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRP 582
L + +L RAYNTV+P+SGKVLTGGVD+NALQRP
Sbjct: 241 RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP 300
Query: 583 KRFFGAAR 590
KRFFGAAR
Sbjct: 301 KRFFGAAR 308
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 83/122 (68%), Gaps = 2/122 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
K+ P ++A +++++E SV +RKQELMFAI KK I GDG +EVL DGFG
Sbjct: 9 FKNKKPPELIAYAESLEVENASV--MRKQELMFAILKKLAAQEIEIIGDGVVEVLQDGFG 66
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS +NY+ DDIY+SPSQIRRF+L TG +G IR PK GERYFALLK+ +N
Sbjct: 67 FLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFDD 126
Query: 492 PK 493
P+
Sbjct: 127 PE 128
>gi|347756794|ref|YP_004864356.1| transcription termination factor Rho [Micavibrio aeruginosavorus
ARL-13]
gi|347589312|gb|AEP08354.1| transcription termination factor Rho [Micavibrio aeruginosavorus
ARL-13]
Length = 418
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/349 (67%), Positives = 294/349 (84%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G G LEVL DGFGFLRS NY+ DDIY+SPSQ+RRF L TGD VEGEIR PK
Sbjct: 46 GVPIAGAGVLEVLQDGFGFLRSPEENYLPGPDDIYVSPSQVRRFGLRTGDIVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ +NGE PE ++R FDNLTPL+P++ + LE +K+ ++ R+I+L+
Sbjct: 106 DSERYFALLKVGSINGEAPEKIRHRINFDNLTPLYPERKIKLELADPTKKGMSQRVIELV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P+G GQR L+VA P++GK++++Q IAH+I TNH +A +IV+LIDERPEEVT+M RSVRG
Sbjct: 166 SPLGFGQRALIVAPPRTGKTVLMQDIAHSIATNHPDAYLIVLLIDERPEEVTDMARSVRG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DVIILLDSITRLARAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPAARHVQVAEMVMEKAKRLVEHKRDVIILLDSITRLARAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIE+GGSLTIIATALIETGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEQGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+R++++KRV+PAI++ KSGTR+EELL+ L K+WVLR++L + T
Sbjct: 346 DRKISDKRVFPAIDIQKSGTRKEELLVDKATLSKMWVLRRILNPMGTTD 394
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q IAH+I TNH +A +IV+LIDERPEEVT+M RSVRGEVI+STFDEPA
Sbjct: 177 VAPPRTGKTVLMQDIAHSIATNHPDAYLIVLLIDERPEEVTDMARSVRGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 ARHVQVAEMVMEKAKRLVEHKRDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 76/106 (71%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L +++ +RKQ++MFAI K+ + G I G G LEVL DGFGFLRS NY+ DDI
Sbjct: 20 ELGLDNCNTMRKQDMMFAILKQLAEEGVPIAGAGVLEVLQDGFGFLRSPEENYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK 493
Y+SPSQ+RRF L TG + +GEIR PK+ ERYFALLK+ +N +P+
Sbjct: 80 YVSPSQVRRFGLRTGDIVEGEIRAPKDSERYFALLKVGSINGEAPE 125
>gi|157825820|ref|YP_001493540.1| transcription termination factor Rho [Rickettsia akari str.
Hartford]
gi|157799778|gb|ABV75032.1| transcription termination factor Rho [Rickettsia akari str.
Hartford]
Length = 458
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q L++ ++ L KQEL+FAI +K + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEALKIENINSLLKQELVFAILQKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|383501660|ref|YP_005415019.1| transcription termination factor Rho [Rickettsia australis str.
Cutlack]
gi|378932671|gb|AFC71176.1| transcription termination factor Rho [Rickettsia australis str.
Cutlack]
Length = 458
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 78/110 (70%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEALKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|395491239|ref|ZP_10422818.1| transcription termination factor Rho [Sphingomonas sp. PAMC 26617]
gi|404251802|ref|ZP_10955770.1| transcription termination factor Rho [Sphingomonas sp. PAMC 26621]
Length = 418
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/345 (67%), Positives = 298/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GEQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDIYISPNQVRKFGLRTGDTVEGEIRGPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL+++ VN + P+ ++R FDNLTPL+P++ L L+ + + ++ + R+ID+I
Sbjct: 106 DGERYFALVRLTAVNFDDPDAVRHRVNFDNLTPLYPEEKLTLDPSDPTVKDKSARVIDII 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRTLIVAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ KL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVDQSKLSKMWVLRRILMQM 390
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 177 VAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 79/106 (74%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + S LRKQ+LMFAI K + + GE+I G G++EVLPDGFGFLRS +NY+A DDIY
Sbjct: 21 LGIESASTLRKQDLMFAILKVQAEQGEQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+SP+Q+R+F L TG +GEIR PK+GERYFAL+++ VN P +
Sbjct: 81 ISPNQVRKFGLRTGDTVEGEIRGPKDGERYFALVRLTAVNFDDPDA 126
>gi|407975442|ref|ZP_11156347.1| transcription termination factor Rho [Nitratireductor indicus C115]
gi|407429070|gb|EKF41749.1| transcription termination factor Rho [Nitratireductor indicus C115]
Length = 418
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/345 (68%), Positives = 296/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSATANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + L +E + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFEDPEKIRHKIHFDNLTPLYPDERLNMELENPTTKDLSARVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT+NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITSNHPECFLIVLLIDERPEEVTDMQRSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPASRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PAI++ KSGTR+E+LLI LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAIDILKSGTRKEDLLIPRQDLQKIFVLRRILAPMGTT 393
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+IT+NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 177 VAPPRTGKTVLLQNIAHSITSNHPECFLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK + I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 21 LEVENASIMRKQELMFAILKKLSTQDIEIIGEGVVEVLQDGFGFLRSATANYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK 493
+SPSQIRRF+L TG +G IR PK GERYFALLK+ +N P+
Sbjct: 81 ISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFEDPE 125
>gi|297568587|ref|YP_003689931.1| transcription termination factor Rho [Desulfurivibrio alkaliphilus
AHT2]
gi|296924502|gb|ADH85312.1| transcription termination factor Rho [Desulfurivibrio alkaliphilus
AHT2]
Length = 421
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/342 (68%), Positives = 291/342 (85%), Gaps = 3/342 (0%)
Query: 9 FGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGER 68
+G G LEVLPDGFGFLR+ NY+ DDIY+SPSQIRR NL TGD VEG +R PK GER
Sbjct: 53 YGGGVLEVLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRLNLRTGDTVEGPVRFPKEGER 112
Query: 69 YFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIG 128
YFALLK+ +VN + PE S+++TLF NLTPLHP + L LER+ N + RI+D++APIG
Sbjct: 113 YFALLKVDRVNFDPPEKSRDKTLFSNLTPLHPNERLNLERD---PANFSTRIMDMMAPIG 169
Query: 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIA 188
KGQRGL+VA P++GK++++ IA++IT NH E I+IV+LIDERPEEVT+M RSV EVI+
Sbjct: 170 KGQRGLIVAPPRTGKTVLITDIANSITKNHPEVILIVLLIDERPEEVTDMARSVNAEVIS 229
Query: 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGV 248
STFDEP RH+QVAEMVL+KA+RLVE +KDV+ILLDSITRLARAYNTV+P SGK+L+GGV
Sbjct: 230 STFDEPPQRHIQVAEMVLDKARRLVEHQKDVVILLDSITRLARAYNTVVPPSGKILSGGV 289
Query: 249 DSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRL 308
DSNAL RPKRFFGAARNIEEGGSLTIIA+ALIETGSRMDDVI+EEFKGTGNME+ L+R+L
Sbjct: 290 DSNALHRPKRFFGAARNIEEGGSLTIIASALIETGSRMDDVIFEEFKGTGNMELVLDRKL 349
Query: 309 AEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
A++R++P+I++ KSGTR+E+LL+ + + KIW+LRKLL S+
Sbjct: 350 ADRRIFPSIDITKSGTRKEDLLLSAEDMNKIWILRKLLSSMN 391
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/278 (45%), Positives = 157/278 (56%), Gaps = 85/278 (30%)
Query: 397 LRKQELMFAIFKKKT----KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPS 452
+RKQEL+FAI + ++ K G+ +G G LEVLPDGFGFLR+ NY+ DDIY+SPS
Sbjct: 29 MRKQELIFAILQHQSAAQGKNGDN-YGGGVLEVLPDGFGFLRAPDYNYLPGPDDIYVSPS 87
Query: 453 QIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------------ 488
QIRR NL TG +G +R PK GERYFALLK+ +VN
Sbjct: 88 QIRRLNLRTGDTVEGPVRFPKEGERYFALLKVDRVNFDPPEKSRDKTLFSNLTPLHPNER 147
Query: 489 -----------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVM 519
VA P++GK++++ IA++IT NH E I+IV+
Sbjct: 148 LNLERDPANFSTRIMDMMAPIGKGQRGLIVAPPRTGKTVLITDIANSITKNHPEVILIVL 207
Query: 520 LIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVM 552
LIDERPEEVT+M RSV EVI+STFDEP L +
Sbjct: 208 LIDERPEEVTDMARSVNAEVISSTFDEPPQRHIQVAEMVLDKARRLVEHQKDVVILLDSI 267
Query: 553 CKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+LARAYNTV+P SGK+L+GGVDSNAL RPKRFFGAAR
Sbjct: 268 TRLARAYNTVVPPSGKILSGGVDSNALHRPKRFFGAAR 305
>gi|241206941|ref|YP_002978037.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860831|gb|ACS58498.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 421
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSPNANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E +I + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEQIRHKVHFDNLTPLYPNERFKMELDIPTTKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 158/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSPNA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P QIR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEQIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDIPTTKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|148555744|ref|YP_001263326.1| transcription termination factor Rho [Sphingomonas wittichii RW1]
gi|148500934|gb|ABQ69188.1| transcription termination factor Rho [Sphingomonas wittichii RW1]
Length = 418
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I G+G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GEQIMGEGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL ++ +N + P++ ++R FDNLTPL+P++ L L+ + ++ + R+ID++
Sbjct: 106 DGERYFALTRLASINFDDPDVVRHRVNFDNLTPLYPEEKLRLDTLDPTVKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV G
Sbjct: 166 SPQGKGQRALIVAPPRVGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVNG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ KL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPAMDVGKSGTRKEELLVDKGKLSKMWVLRRILMQM 390
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV GEVI+STFDEPA
Sbjct: 177 VAPPRVGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVNGEVISSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 QRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 88/125 (70%), Gaps = 5/125 (4%)
Query: 369 KNLLKDACMPLV-LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLP 427
K+L K + LV +AE +L V +RKQ+LMFAI K + + GE+I G+G++EVLP
Sbjct: 4 KDLKKKSPADLVSMAE----ELGVEGASTMRKQDLMFAILKVEAENGEQIMGEGTIEVLP 59
Query: 428 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKV 487
DGFGFLRS +NY+A DDIY+SP+Q+R+F L TG +GEIR PK+GERYFAL ++ +
Sbjct: 60 DGFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTRLASI 119
Query: 488 NVASP 492
N P
Sbjct: 120 NFDDP 124
>gi|421589857|ref|ZP_16034940.1| transcription termination factor Rho [Rhizobium sp. Pop5]
gi|403705115|gb|EJZ20799.1| transcription termination factor Rho [Rhizobium sp. Pop5]
Length = 418
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E +I + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTSKDLSPRVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 394
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 159/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 15 LAFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSANA 70
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 71 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 130
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + + ++ + + + VA P++GK+++LQ+
Sbjct: 131 VHFDNLTPLYPNERFKMELDIPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 191 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 251 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|116254464|ref|YP_770302.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
viciae 3841]
gi|115259112|emb|CAK10223.1| putative transcription termination factor rho [Rhizobium
leguminosarum bv. viciae 3841]
Length = 421
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E +I + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTTKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 158/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDIPTTKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|433772247|ref|YP_007302714.1| transcription termination factor Rho [Mesorhizobium australicum
WSM2073]
gi|433664262|gb|AGB43338.1| transcription termination factor Rho [Mesorhizobium australicum
WSM2073]
Length = 421
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/346 (68%), Positives = 292/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGDGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P L +E + ++I+ R+IDL+API
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKIHFDNLTPLYPTSRLKMEVDNPPGKDISPRVIDLVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+ A P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRALINAQPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNCEIQLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR+YPAI++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIYPAIDILKSGTRKEDLLVSRQDLQKIFVLRRILAPMGTTD 397
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 170/302 (56%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
K+ P ++A +++++E SV +RKQELMFAI KK I GDG +EVL DGFG
Sbjct: 9 FKNKKPPELIAYAESLEVENASV--MRKQELMFAILKKLAAQDIEIIGDGVVEVLQDGFG 66
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS +NY+ DDIY+SPSQIRRF+L TG +G IR PK GERYFALLK+ +N
Sbjct: 67 FLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFDD 126
Query: 492 PKS---------------------------GKSI-------------------------- 498
P+ GK I
Sbjct: 127 PEKIRHKIHFDNLTPLYPTSRLKMEVDNPPGKDISPRVIDLVAPIGKGQRALINAQPRTG 186
Query: 499 ---ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
+LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 187 KTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAVRHVQVA 246
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 247 EMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 306
Query: 589 AR 590
AR
Sbjct: 307 AR 308
>gi|430005746|emb|CCF21549.1| Transcription termination factor Rho [Rhizobium sp.]
Length = 421
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSARVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 160/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LTFAES----LEVENASTMRKQELMFAILKVLASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQIR R
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDVPTSKDLSARVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|424872970|ref|ZP_18296632.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393168671|gb|EJC68718.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 421
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSPNANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E +I + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTTKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 158/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSPNA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDIPTTKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|375335599|ref|ZP_09776943.1| transcription termination factor Rho [Succinivibrionaceae bacterium
WG-1]
Length = 422
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/352 (67%), Positives = 298/352 (84%), Gaps = 1/352 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K GE IFG G L++LPDG+GFLRS S+Y+A DDIY+S +QIR+ NLH GD V G+IR
Sbjct: 43 SKSGEDIFGAGVLQILPDGYGFLRSADSSYLAGPDDIYVSQNQIRKLNLHNGDTVCGKIR 102
Query: 62 VPK-NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
PK + ERYFALL++ +N +KPE ++N+ LF+NLTPLHP + + LER S E+IT R+
Sbjct: 103 PPKADNERYFALLRVDSINFDKPENARNKILFENLTPLHPTERMRLERGNGSTEDITARV 162
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DL +PIGKGQRGL+VA PK+GK+++LQ+IA +I +N+ E +IV+LIDERPEEVTEM+R
Sbjct: 163 VDLASPIGKGQRGLVVAPPKAGKTMLLQNIAQSIYSNNPECDLIVLLIDERPEEVTEMKR 222
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
V+GEV+ASTFDEP RHVQVAEMV++KAKRLVE K DV+ILLDSITRLARAYN VIP+S
Sbjct: 223 LVKGEVVASTFDEPPARHVQVAEMVIDKAKRLVEHKHDVVILLDSITRLARAYNIVIPSS 282
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
G+VLTGGVD+NALQ PKR FGAARN+EEGGSLTII TALI+TGS+MD+VIYEEFKGTGNM
Sbjct: 283 GRVLTGGVDANALQGPKRIFGAARNVEEGGSLTIIGTALIDTGSKMDEVIYEEFKGTGNM 342
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
E+HL R++AEKRV+PAI++ +SGTR EE L D+LQK+WVLRK ++S++ T
Sbjct: 343 ELHLSRKIAEKRVFPAIDITRSGTRHEEFLTAPDELQKMWVLRKFIHSMSET 394
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I +N+ E +IV+LIDERPEEVTEM+R V+GEV+ASTFDEP
Sbjct: 178 VAPPKAGKTMLLQNIAQSIYSNNPECDLIVLLIDERPEEVTEMKRLVKGEVVASTFDEPP 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN VIP+SG+VLTGGVD+NALQ
Sbjct: 238 ARHVQVAEMVIDKAKRLVEHKHDVVILLDSITRLARAYNIVIPSSGRVLTGGVDANALQG 297
Query: 582 PKRFFGAAR 590
PKR FGAAR
Sbjct: 298 PKRIFGAAR 306
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
++++ RL +++++F I K +K GE IFG G L++LPDG+GFLRS S+Y+A DDIY+S
Sbjct: 23 LDNIGRLSRKDIIFNILKAHSKSGEDIFGAGVLQILPDGYGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPK-NGERYFALLKIKKVNVASPKSGKSIIL 500
+QIR+ NLH G G+IR PK + ERYFALL++ +N P++ ++ IL
Sbjct: 83 QNQIRKLNLHNGDTVCGKIRPPKADNERYFALLRVDSINFDKPENARNKIL 133
>gi|407778218|ref|ZP_11125483.1| transcription termination factor Rho [Nitratireductor pacificus
pht-3B]
gi|407299899|gb|EKF19026.1| transcription termination factor Rho [Nitratireductor pacificus
pht-3B]
Length = 418
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/345 (68%), Positives = 296/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSATANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + L +E + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFEDPEKIRHKIHFDNLTPLYPDERLNMEIENPTTKDLSARVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT+NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITSNHPECFLIVLLIDERPEEVTDMQRSVKGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPASRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PAI++ KSGTR+E+LLI LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAIDILKSGTRKEDLLIARQDLQKIFVLRRILAPMGTT 393
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+IT+NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 177 VAPPRTGKTVLLQNIAHSITSNHPECFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK + I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 21 LEVENASIMRKQELMFAILKKLSTQDIEIIGEGVVEVLQDGFGFLRSATANYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK 493
+SPSQIRRF+L TG +G IR PK GERYFALLK+ +N P+
Sbjct: 81 ISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFEDPE 125
>gi|209883536|ref|YP_002287393.1| transcription termination factor Rho [Oligotropha carboxidovorans
OM5]
gi|337739393|ref|YP_004631121.1| transcription termination factor Rho [Oligotropha carboxidovorans
OM5]
gi|386028412|ref|YP_005949187.1| transcription termination factor Rho [Oligotropha carboxidovorans
OM4]
gi|209871732|gb|ACI91528.1| transcription termination factor Rho [Oligotropha carboxidovorans
OM5]
gi|336093480|gb|AEI01306.1| transcription termination factor Rho [Oligotropha carboxidovorans
OM4]
gi|336097057|gb|AEI04880.1| transcription termination factor Rho [Oligotropha carboxidovorans
OM5]
Length = 421
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/342 (67%), Positives = 295/342 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +E+LPDGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG+IR PK GE
Sbjct: 52 IIGEGVVEILPDGFGFLRSSDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE N ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFKLELNDPTRKDLSPRVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAHAITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHAITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+++KR++PAI++ +SGTR+EEL+ L+K++VLR++L +
Sbjct: 352 VSDKRIFPAIDIARSGTRKEELITDPQTLKKMYVLRRILNPM 393
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 166/286 (58%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFAI K I G+G +E+LPDGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFAILKLLASQETDIIGEGVVEILPDGFGFLRSSDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G+IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGQIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAHAITTNH
Sbjct: 143 FPDERFKLELNDPTRKDLSPRVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHAITTNH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|91205552|ref|YP_537907.1| transcription termination factor Rho [Rickettsia bellii RML369-C]
gi|157827268|ref|YP_001496332.1| transcription termination factor Rho [Rickettsia bellii OSU 85-389]
gi|122425609|sp|Q1RIJ6.1|RHO_RICBR RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|91069096|gb|ABE04818.1| Transcription termination factor [Rickettsia bellii RML369-C]
gi|157802572|gb|ABV79295.1| transcription termination factor Rho [Rickettsia bellii OSU 85-389]
Length = 449
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/342 (69%), Positives = 292/342 (85%), Gaps = 1/342 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG IR PK
Sbjct: 73 GGSIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGRIRAPK 132
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ KVN E P + +R FDNLTPL+P + L LE SK+ + R+I+L+
Sbjct: 133 EGERYFALLKVNKVNFEDPSKAYHRVNFDNLTPLYPDEKLGLELEDNSKD-FSTRVIELV 191
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRG
Sbjct: 192 APMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRG 251
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGKVL
Sbjct: 252 EVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVL 311
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+ L
Sbjct: 312 TGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEIVL 371
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 372 DRKIADKRIYPAIDITRSGTRKEDLLVDKIVLNKMWVLRRII 413
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 140/290 (48%), Positives = 169/290 (58%), Gaps = 82/290 (28%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ +V LRKQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 42 QAQAEELKIENVSSLRKQELVFAILKKSVEQGGSIVGEGVLEVLPDGFGFLRSPEVNYLA 101
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP---------- 492
DDIY+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN P
Sbjct: 102 GPDDIYISPSQIRRFGLRTGDTVEGRIRAPKEGERYFALLKVNKVNFEDPSKAYHRVNFD 161
Query: 493 ----------------------------------KSGKSIIL-----------QHIAHAI 507
K +++I+ Q+IAHAI
Sbjct: 162 NLTPLYPDEKLGLELEDNSKDFSTRVIELVAPMGKGQRALIVAPPRTGKTVLLQNIAHAI 221
Query: 508 TTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------- 548
TTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 222 TTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPASRHVQLAEMVIEKAKRLVE 281
Query: 549 --------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 282 HKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 331
>gi|15604383|ref|NP_220899.1| transcription termination factor Rho [Rickettsia prowazekii str.
Madrid E]
gi|383487349|ref|YP_005405029.1| transcription termination factor Rho [Rickettsia prowazekii str.
GvV257]
gi|383487928|ref|YP_005405607.1| transcription termination factor Rho [Rickettsia prowazekii str.
Chernikova]
gi|383488774|ref|YP_005406452.1| transcription termination factor Rho [Rickettsia prowazekii str.
Katsinyian]
gi|383489613|ref|YP_005407290.1| transcription termination factor Rho [Rickettsia prowazekii str.
Dachau]
gi|383499754|ref|YP_005413115.1| transcription termination factor Rho [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500590|ref|YP_005413950.1| transcription termination factor Rho [Rickettsia prowazekii str.
RpGvF24]
gi|386082374|ref|YP_005998951.1| Transcription termination factor [Rickettsia prowazekii str. Rp22]
gi|6647729|sp|Q9ZD24.1|RHO_RICPR RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|3861075|emb|CAA14975.1| TRANSCRIPTION TERMINATION FACTOR RHO (rho) [Rickettsia prowazekii
str. Madrid E]
gi|292572138|gb|ADE30053.1| Transcription termination factor [Rickettsia prowazekii str. Rp22]
gi|380757714|gb|AFE52951.1| transcription termination factor Rho [Rickettsia prowazekii str.
GvV257]
gi|380758287|gb|AFE53523.1| transcription termination factor Rho [Rickettsia prowazekii str.
RpGvF24]
gi|380760807|gb|AFE49329.1| transcription termination factor Rho [Rickettsia prowazekii str.
Chernikova]
gi|380761653|gb|AFE50174.1| transcription termination factor Rho [Rickettsia prowazekii str.
Katsinyian]
gi|380762500|gb|AFE51020.1| transcription termination factor Rho [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380763336|gb|AFE51855.1| transcription termination factor Rho [Rickettsia prowazekii str.
Dachau]
Length = 457
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 75 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 134
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 135 AGERYFALLKVNRVNFEDPAKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 194
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 195 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 254
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 255 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 314
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 315 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 374
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 375 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 418
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 208 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 267
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 268 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 327
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 328 PKRFFGAAR 336
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 44 QVQAEELKIENISSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 103
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 104 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 153
>gi|417103597|ref|ZP_11961097.1| transcription termination factor protein [Rhizobium etli CNPAF512]
gi|327191198|gb|EGE58241.1| transcription termination factor protein [Rhizobium etli CNPAF512]
Length = 421
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E +I + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 159/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDIPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|67459157|ref|YP_246781.1| transcription termination factor Rho [Rickettsia felis URRWXCal2]
gi|75536411|sp|Q4ULF7.1|RHO_RICFE RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|67004690|gb|AAY61616.1| Transcription termination factor [Rickettsia felis URRWXCal2]
Length = 458
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEELKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|190893980|ref|YP_001980522.1| transcription termination factor Rho [Rhizobium etli CIAT 652]
gi|424889336|ref|ZP_18312939.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|424897611|ref|ZP_18321185.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|190699259|gb|ACE93344.1| transcription termination factor protein [Rhizobium etli CIAT 652]
gi|393174885|gb|EJC74929.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393181838|gb|EJC81877.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 421
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E +I + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 159/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDIPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|83944963|ref|ZP_00957329.1| transcription termination factor Rho [Oceanicaulis sp. HTCC2633]
gi|83851745|gb|EAP89600.1| transcription termination factor Rho [Oceanicaulis sp. HTCC2633]
Length = 418
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/342 (67%), Positives = 295/342 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G G+LEVL DGFGFLR+ SNY+ DDIY+SPSQIRRF L TGD VEGEIR P+
Sbjct: 46 GAEISGGGTLEVLQDGFGFLRAPESNYLPGPDDIYVSPSQIRRFGLRTGDTVEGEIRAPR 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFALLK+ +N E+PE S+++ FDNLTPL+P + +E +K++ +GR+ID++
Sbjct: 106 DNERYFALLKVSSINFEEPEKSRHKVHFDNLTPLYPDERFNMEIQDPTKKDRSGRVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P+GKGQR L+VA P++GK++++Q++AHAI TNH E ++V+LIDERPEEVT+MQR+V+G
Sbjct: 166 SPLGKGQRALIVAPPRTGKTVLMQNVAHAIETNHPECYLMVLLIDERPEEVTDMQRTVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVASTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSLTII+TALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIIL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R++A+KRV+PAI++ KSGTR+EELL+ LQK +VLR++L
Sbjct: 346 DRKVADKRVFPAIDILKSGTRKEELLVPKQDLQKTYVLRRIL 387
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/285 (42%), Positives = 157/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ + LRKQ +MFAI K G I G G+LEVL DGFGFLR+ SNY+ DDIY
Sbjct: 21 LDIENASSLRKQGMMFAILKALADEGAEISGGGTLEVLQDGFGFLRAPESNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKG----------------------------------------- 467
+SPSQIRRF L TG +G
Sbjct: 81 VSPSQIRRFGLRTGDTVEGEIRAPRDNERYFALLKVSSINFEEPEKSRHKVHFDNLTPLY 140
Query: 468 -------EIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
EI+ P +R ++ I + + VA P++GK++++Q++AHAI TNH
Sbjct: 141 PDERFNMEIQDPTKKDRSGRVIDIVSPLGKGQRALIVAPPRTGKTVLMQNVAHAIETNHP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E ++V+LIDERPEEVT+MQR+V+GEV+ASTFDEPA
Sbjct: 201 ECYLMVLLIDERPEEVTDMQRTVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEHKRDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 261 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|386289529|ref|ZP_10066659.1| transcription termination factor Rho [gamma proteobacterium BDW918]
gi|385277592|gb|EIF41574.1| transcription termination factor Rho [gamma proteobacterium BDW918]
Length = 422
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/355 (69%), Positives = 303/355 (85%), Gaps = 3/355 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I GDG LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIHGDGVLEILQDGFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +PE SKN+ LF+NLTPL P + L LE S E++TGRII
Sbjct: 103 PPKEGERYFALLKVDEVNFARPEQSKNKVLFENLTPLFPNERLTLELGTGSTEDLTGRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL APIGKGQRGL+VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEMQRS
Sbjct: 163 DLAAPIGKGQRGLIVAPPKAGKTLMLQNIAASIIRNNPECYVIVLLIDERPEEVTEMQRS 222
Query: 182 V--RG-EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIP 238
V RG EV+ASTFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDS+TRLARAYNT++P
Sbjct: 223 VGVRGAEVVASTFDEPPARHVQVAEMVIEKAKRLVEHKRDVVILLDSVTRLARAYNTIVP 282
Query: 239 ASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTG 298
+SGKVLTGGVD++AL+RPKRFFGAARN+EEGGSL+IIATALI+TGS+MD+VIYEEFKGTG
Sbjct: 283 SSGKVLTGGVDAHALERPKRFFGAARNVEEGGSLSIIATALIDTGSKMDEVIYEEFKGTG 342
Query: 299 NMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
N E+HL+R++AEKRVYPAIN+ +SGTRREELL +++L ++W+LRKLL+ + T+
Sbjct: 343 NNELHLDRKIAEKRVYPAINIRRSGTRREELLTGEEELARMWILRKLLHGMEDTA 397
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 84/113 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ +++V R RKQ+++F+I K+ K GE I GDG LE+L DGFGFLRS +Y+A DDI
Sbjct: 20 EIGLDNVSRSRKQDIIFSILKRHAKSGEDIHGDGVLEILQDGFGFLRSADCSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN A P+ K+ +L
Sbjct: 80 YVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVDEVNFARPEQSKNKVL 132
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 91/132 (68%), Gaps = 30/132 (22%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV--RG-EVIASTFD 545
VA PK+GK+++LQ+IA +I N+ E +IV+LIDERPEEVTEMQRSV RG EV+ASTFD
Sbjct: 177 VAPPKAGKTLMLQNIAASIIRNNPECYVIVLLIDERPEEVTEMQRSVGVRGAEVVASTFD 236
Query: 546 EPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNA 578
EP L + +LARAYNT++P+SGKVLTGGVD++A
Sbjct: 237 EPPARHVQVAEMVIEKAKRLVEHKRDVVILLDSVTRLARAYNTIVPSSGKVLTGGVDAHA 296
Query: 579 LQRPKRFFGAAR 590
L+RPKRFFGAAR
Sbjct: 297 LERPKRFFGAAR 308
>gi|86359702|ref|YP_471594.1| transcription termination factor Rho [Rhizobium etli CFN 42]
gi|209551503|ref|YP_002283420.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|424916226|ref|ZP_18339590.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|86283804|gb|ABC92867.1| transcription termination factor protein [Rhizobium etli CFN 42]
gi|209537259|gb|ACI57194.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392852402|gb|EJB04923.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 421
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E I + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEIPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 159/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEIPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|402848269|ref|ZP_10896533.1| Transcription termination factor A33M [Rhodovulum sp. PH10]
gi|402501423|gb|EJW13071.1| Transcription termination factor A33M [Rhodovulum sp. PH10]
Length = 421
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/339 (68%), Positives = 295/339 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG+IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSPEANYLPGPDDIYVSPSQIRRFGLRTGDTIEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E P+ ++++ FDNLTPL+P + L +E ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTINFEDPDKARHKINFDNLTPLYPDERLRMEVEDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+V+ P++GK+++LQ+IAHAIT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRALIVSPPRTGKTVLLQNIAHAITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE ++DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPASRHVQVAEMVIEKAKRLVEHQRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KR +PAI++ +SGTR+EELL ++ L+KI+VLR++L
Sbjct: 352 VADKRTFPAIDITRSGTRKEELLTENQTLKKIYVLRRIL 390
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 165/284 (58%), Gaps = 83/284 (29%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
EV + +RKQELMFAI K+ + I G+G +EVL DGFGFLRS +NY+ DDIY+
Sbjct: 25 EVENASTMRKQELMFAILKQLAQKDIEIIGEGVVEVLQDGFGFLRSPEANYLPGPDDIYV 84
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN--------- 488
SPSQIRRF L TG +G+IR PK GERYFALLK+ K+N
Sbjct: 85 SPSQIRRFGLRTGDTIEGQIRSPKEGERYFALLKVNTINFEDPDKARHKINFDNLTPLYP 144
Query: 489 -----------------------------------VASPKSGKSIILQHIAHAITTNHSE 513
V+ P++GK+++LQ+IAHAIT NH E
Sbjct: 145 DERLRMEVEDPTRKDLSARVIDIVAPIGKGQRALIVSPPRTGKTVLLQNIAHAITANHPE 204
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 205 CYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPASRHVQVAEMVIEKAKRLVEHQRDVV 264
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 265 ILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|409439624|ref|ZP_11266673.1| Transcription termination factor Rho [Rhizobium mesoamericanum
STM3625]
gi|408749000|emb|CCM77854.1| Transcription termination factor Rho [Rhizobium mesoamericanum
STM3625]
Length = 421
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFRMELDVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 159/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKVLASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ ++ E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFRMELDVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|393723054|ref|ZP_10342981.1| transcription termination factor Rho [Sphingomonas sp. PAMC 26605]
Length = 418
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/345 (67%), Positives = 295/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GEEIMGLGTIEVLPDGFGFLRSPEANYLAGPDDIYISPNQVRKFGLRTGDTVEGEIRGPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ VN + P+ ++R FDNLTPL+P++ L L+ + ++ + R+ID+I
Sbjct: 106 DGERYFALTKLTAVNFDNPDAVRHRVNFDNLTPLYPEQKLTLDPADPTVKDKSARVIDII 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRTLIVAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ KL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVDQSKLSKMWVLRRILMQM 390
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 177 VAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 78/106 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + S LRKQ+LMFAI K + + GE I G G++EVLPDGFGFLRS +NY+A DDIY
Sbjct: 21 LGIESASTLRKQDLMFAILKVQAEEGEEIMGLGTIEVLPDGFGFLRSPEANYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+SP+Q+R+F L TG +GEIR PK+GERYFAL K+ VN +P +
Sbjct: 81 ISPNQVRKFGLRTGDTVEGEIRGPKDGERYFALTKLTAVNFDNPDA 126
>gi|383752484|ref|YP_005427584.1| transcription termination factor Rho [Rickettsia typhi str. TH1527]
gi|383843319|ref|YP_005423822.1| transcription termination factor Rho [Rickettsia typhi str.
B9991CWPP]
gi|147732424|sp|Q68WL0.2|RHO_RICTY RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|380759127|gb|AFE54362.1| transcription termination factor Rho [Rickettsia typhi str. TH1527]
gi|380759966|gb|AFE55200.1| transcription termination factor Rho [Rickettsia typhi str.
B9991CWPP]
Length = 457
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I GDG LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 75 GGLIVGDGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 134
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN + P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 135 AGERYFALLKVNRVNFDDPVNAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 194
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 195 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 254
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 255 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 314
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 315 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 374
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 375 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 418
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 208 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 267
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 268 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 327
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 328 PKRFFGAAR 336
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I GDG LEVLPDGFGFLRS NY+A
Sbjct: 44 QVQAEELKIENISSLLKQELVFAILKKSVEQGGLIVGDGVLEVLPDGFGFLRSPEVNYLA 103
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 104 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFDDP 153
>gi|406990594|gb|EKE10239.1| hypothetical protein ACD_16C00066G0016 [uncultured bacterium]
Length = 418
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 294/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE IFG G +E+L DGF FLRS +NY+ DDIY+SPSQ+R+F L TGD VEGEIR PK
Sbjct: 46 GEAIFGGGVVEILQDGFAFLRSPEANYLPGPDDIYVSPSQVRKFALRTGDTVEGEIRSPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFALLK+ +N ++P++ K+R FDNLTPL+P + L LE + +++T R+I+L+
Sbjct: 106 DGERYFALLKVNTINNQQPDVIKHRLNFDNLTPLYPDEKLNLEIEDPTNKDLTARVIELV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
PIGKGQR L+VA P+SGK++++Q+IAH++ NH E ++V+LIDERPEEVT+M RSV+G
Sbjct: 166 TPIGKGQRALIVAPPRSGKTVMMQNIAHSLALNHPEVTLMVLLIDERPEEVTDMARSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE+K DV+ILLD+ITRLARAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPATRHVQVAEMVIEKAKRLVELKHDVVILLDNITRLARAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSLTII+TALIETGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLTIISTALIETGSRMDEVIFEEFKGTGNAEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R+L++KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 346 DRKLSDKRTFPAIDITKSGTRKEELLVSKGLLTKMWVLRRILIPM 390
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 163/295 (55%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE Q EV + LRKQ++MFAI K+ + GE IFG G +E+L DGF FLRS +
Sbjct: 15 LALAEEQ----EVENASTLRKQDMMFAILKRMAEKGEAIFGGGVVEILQDGFAFLRSPEA 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKG------------------------------- 467
NY+ DDIY+SPSQ+R+F L TG +G
Sbjct: 71 NYLPGPDDIYVSPSQVRKFALRTGDTVEGEIRSPKDGERYFALLKVNTINNQQPDVIKHR 130
Query: 468 -----------------EIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
EI P N + ++++ + + VA P+SGK++++Q+
Sbjct: 131 LNFDNLTPLYPDEKLNLEIEDPTNKDLTARVIELVTPIGKGQRALIVAPPRSGKTVMMQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH++ NH E ++V+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 191 IAHSLALNHPEVTLMVLLIDERPEEVTDMARSVKGEVISSTFDEPATRHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 251 KRLVELKHDVVILLDNITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|405376998|ref|ZP_11030947.1| transcription termination factor Rho [Rhizobium sp. CF142]
gi|397326551|gb|EJJ30867.1| transcription termination factor Rho [Rhizobium sp. CF142]
Length = 421
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDS+TRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSVTRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 160/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQIR R
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSVTRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|222150247|ref|YP_002551204.1| transcription termination factor Rho [Agrobacterium vitis S4]
gi|221737229|gb|ACM38192.1| transcription termination factor Rho [Agrobacterium vitis S4]
Length = 421
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/345 (67%), Positives = 295/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGF+RS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFMRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E I + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELEIPTSKDLSSRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++P++++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPSMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTT 396
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 160/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGF+RS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFMRSANA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQIR R
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ +P + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEIPTSKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|402489616|ref|ZP_10836410.1| transcription termination factor Rho [Rhizobium sp. CCGE 510]
gi|401811408|gb|EJT03776.1| transcription termination factor Rho [Rhizobium sp. CCGE 510]
Length = 418
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSPNANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTTKDLSPRVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 394
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 158/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 15 LAFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSPNA 70
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 71 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 130
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ VP + ++ + + + VA P++GK+++LQ+
Sbjct: 131 VHFDNLTPLYPNERFKMELDVPTTKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 191 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 251 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|51473707|ref|YP_067464.1| transcription termination factor Rho [Rickettsia typhi str.
Wilmington]
gi|51460019|gb|AAU03982.1| transcription termination factor Rho [Rickettsia typhi str.
Wilmington]
Length = 450
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I GDG LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 68 GGLIVGDGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 127
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN + P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 128 AGERYFALLKVNRVNFDDPVNAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 187
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 188 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 247
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 248 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 307
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 308 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 367
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 368 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 411
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 201 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 260
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 261 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 320
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 321 PKRFFGAAR 329
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I GDG LEVLPDGFGFLRS NY+A
Sbjct: 37 QVQAEELKIENISSLLKQELVFAILKKSVEQGGLIVGDGVLEVLPDGFGFLRSPEVNYLA 96
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 97 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFDDP 146
>gi|114777397|ref|ZP_01452394.1| transcription termination factor Rho [Mariprofundus ferrooxydans
PV-1]
gi|114552179|gb|EAU54681.1| transcription termination factor Rho [Mariprofundus ferrooxydans
PV-1]
Length = 639
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/363 (63%), Positives = 298/363 (82%), Gaps = 2/363 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+ +G LE+LPDGFGFLRS +NY++ SDD+Y+S QIRRF L GD V GEIR P+ GE
Sbjct: 270 IYSEGVLEILPDGFGFLRSPDANYLSGSDDVYVSTHQIRRFYLRKGDTVAGEIRSPRRGE 329
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
+YFAL + NGE PE+++ + LFDNLTPL+P + L +E + + ++ITGRIID+++PI
Sbjct: 330 KYFALKTVDTTNGEPPEVARTKVLFDNLTPLYPNERLKMEIDDPTHKDITGRIIDIVSPI 389
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR LLVA P++GK++++Q IAH+I NH E +++V+LIDERPEEVT+M+RSV+GEV+
Sbjct: 390 GKGQRALLVAPPRTGKTVMMQSIAHSIAANHPEVVLMVLLIDERPEEVTDMKRSVKGEVV 449
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQV+EMV+EKAKRLVE +DV+ILLDSITRLARAYNTV+P+SGK+LTGG
Sbjct: 450 SSTFDEPAQRHVQVSEMVIEKAKRLVEHGRDVVILLDSITRLARAYNTVVPSSGKILTGG 509
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NAL RPKRFFGAARNIE GGSLTIIATAL+ETGS+MD+VI+EEFKGTGNME+ L+R+
Sbjct: 510 VDANALHRPKRFFGAARNIEGGGSLTIIATALVETGSKMDEVIFEEFKGTGNMEIKLDRK 569
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPV 367
L +KRV+P+I++ SGTR+EELL + LQK+W+LRK+L M + F I + P
Sbjct: 570 LTDKRVFPSIDIAPSGTRKEELLTPREDLQKVWILRKILSP--MGTIDAMEFLIDKLGPT 627
Query: 368 EKN 370
+ N
Sbjct: 628 KNN 630
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 141/277 (50%), Gaps = 83/277 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRS--------------------- 435
+RKQE + AI + I+ +G LE+LPDGFGFLRS
Sbjct: 250 MRKQEQVSAILRAHGLRSGTIYSEGVLEILPDGFGFLRSPDANYLSGSDDVYVSTHQIRR 309
Query: 436 -----------------QGSNYMA--SSDDIYLSPSQIRRFN--------LHTGILWKGE 468
+G Y A + D P ++ R L+ K E
Sbjct: 310 FYLRKGDTVAGEIRSPRRGEKYFALKTVDTTNGEPPEVARTKVLFDNLTPLYPNERLKME 369
Query: 469 IRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVML 520
I P + + ++ I + + VA P++GK++++Q IAH+I NH E +++V+L
Sbjct: 370 IDDPTHKDITGRIIDIVSPIGKGQRALLVAPPRTGKTVMMQSIAHSIAANHPEVVLMVLL 429
Query: 521 IDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMC 553
IDERPEEVT+M+RSV+GEV++STFDEPA L +
Sbjct: 430 IDERPEEVTDMKRSVKGEVVSSTFDEPAQRHVQVSEMVIEKAKRLVEHGRDVVILLDSIT 489
Query: 554 KLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+LARAYNTV+P+SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 490 RLARAYNTVVPSSGKILTGGVDANALHRPKRFFGAAR 526
>gi|359399001|ref|ZP_09192009.1| transcription termination factor Rho [Novosphingobium
pentaromativorans US6-1]
gi|357599546|gb|EHJ61256.1| transcription termination factor Rho [Novosphingobium
pentaromativorans US6-1]
Length = 418
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/345 (66%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R++ L TGD VEGEIR PK
Sbjct: 46 GEEIIGQGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFA+ K+ VN + P++ ++R FDNLTPL+P + L L+ + ++ + R+IDLI
Sbjct: 106 DGERYFAITKLMSVNYDDPDVVRHRVNFDNLTPLYPDERLKLDSLDPTVKDKSARVIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ+IA AIT NH E ++V+L+DERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ D+L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVPKDQLSKMWVLRRILMQM 390
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/286 (44%), Positives = 162/286 (56%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ V +R+Q+LMF I K+ + GE I G G++EVLPDGFGFLRS +NY+A DDI
Sbjct: 20 EMGVEGASTMRRQDLMFGILKEVAEDGEEIIGQGTIEVLPDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP--------------- 492
Y+SP+Q+R++ L TG +GEIR PK+GERYFA+ K+ VN P
Sbjct: 80 YVSPNQVRKWGLRTGDTVEGEIRAPKDGERYFAITKLMSVNYDDPDVVRHRVNFDNLTPL 139
Query: 493 -----------------KSGKSI------------------------ILQHIAHAITTNH 511
KS + I +LQ+IA AIT NH
Sbjct: 140 YPDERLKLDSLDPTVKDKSARVIDLISPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E ++V+L+DERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 PEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|398382493|ref|ZP_10540578.1| transcription termination factor Rho [Sphingobium sp. AP49]
gi|397726599|gb|EJK87032.1| transcription termination factor Rho [Sphingobium sp. AP49]
Length = 418
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G +I G+G++EVLPDGFGFLRS +N++A DDIY+SP+Q+RRF L TGD VEGEIR PK
Sbjct: 46 GAQIMGEGTIEVLPDGFGFLRSPEANFLAGPDDIYVSPNQVRRFGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ VN + P++ ++R FDNLTPL+P++ L L+ + ++ + R+ID++
Sbjct: 106 DGERYFALTKLLSVNFDDPDVVRHRVNFDNLTPLYPEQKLSLDTLDPTVKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRTLIVAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ KL K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVDKAKLSKMWVLRRILMQM 390
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/297 (46%), Positives = 167/297 (56%), Gaps = 83/297 (27%)
Query: 377 MPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQ 436
MP T DL V LRKQ+LMFAI K + + G +I G+G++EVLPDGFGFLRS
Sbjct: 9 MPPADLVTMAEDLGVEGASTLRKQDLMFAILKAEAENGAQIMGEGTIEVLPDGFGFLRSP 68
Query: 437 GSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP---- 492
+N++A DDIY+SP+Q+RRF L TG +GEIR PK+GERYFAL K+ VN P
Sbjct: 69 EANFLAGPDDIYVSPNQVRRFGLRTGDTVEGEIRAPKDGERYFALTKLLSVNFDDPDVVR 128
Query: 493 ----------------------------KSGKSI------------------------IL 500
KS + I +L
Sbjct: 129 HRVNFDNLTPLYPEQKLSLDTLDPTVKDKSARVIDIVSPQGKGQRTLIVAPPRVGKTVML 188
Query: 501 QHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------ 548
Q+IA AIT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 189 QNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHVQVAEMVIE 248
Query: 549 ---------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 249 KAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|296445000|ref|ZP_06886961.1| transcription termination factor Rho [Methylosinus trichosporium
OB3b]
gi|296257421|gb|EFH04487.1| transcription termination factor Rho [Methylosinus trichosporium
OB3b]
Length = 422
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/339 (69%), Positives = 294/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+A DDIY+SPSQIRRF L TGD VEG IR PK GE
Sbjct: 52 IVGEGVVEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIRRFGLRTGDTVEGMIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + L LE ++ +++ R+IDL+API
Sbjct: 112 RYFALLKVNSINFEDPEKIRHKVPFDNLTPLYPDERLKLEIEDPTRRDLSARVIDLVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IA +ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALVVAPPRTGKTVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE ++DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHRRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KRV+PAI++ +SGTR+EELL+ D L+K++VLR++L
Sbjct: 352 VSDKRVFPAIDITRSGTRKEELLVPPDILKKMYVLRRIL 390
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 153/301 (50%), Gaps = 87/301 (28%)
Query: 373 KDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGF-- 430
K A L AE EV + +R+QEL+FAI K+ I G+G +EVL DGF
Sbjct: 12 KSAAELLAFAEEH----EVENASLMRRQELLFAILKQFAGREVEIVGEGVVEVLQDGFGF 67
Query: 431 ----------------------------------GFLRS--QGSNYMA--SSDDI-YLSP 451
G +RS +G Y A + I + P
Sbjct: 68 LRSPDANYLAGPDDIYVSPSQIRRFGLRTGDTVEGMIRSPKEGERYFALLKVNSINFEDP 127
Query: 452 SQIRR---FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGK 496
+IR F+ L+ K EI P + ++ + + + VA P++GK
Sbjct: 128 EKIRHKVPFDNLTPLYPDERLKLEIEDPTRRDLSARVIDLVAPIGKGQRALVVAPPRTGK 187
Query: 497 SIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------- 548
+++LQ+IA +ITTNH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 188 TVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAE 247
Query: 549 -------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAA 589
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAA
Sbjct: 248 MVIEKAKRLVEHRRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAA 307
Query: 590 R 590
R
Sbjct: 308 R 308
>gi|418939413|ref|ZP_13492811.1| transcription termination factor Rho [Rhizobium sp. PDO1-076]
gi|375053875|gb|EHS50272.1| transcription termination factor Rho [Rhizobium sp. PDO1-076]
Length = 421
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E +I + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELDIPTTKDLSARVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++P++++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPSMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 158/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LTFAES----LEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDIPTTKDLSARVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|239947711|ref|ZP_04699464.1| transcription termination factor Rho [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239921987|gb|EER22011.1| transcription termination factor Rho [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 454
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 72 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 131
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 132 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 191
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 192 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 251
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RH+Q+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 252 RGEVVSSTFDEPASRHMQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 311
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 312 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 371
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 372 VLDRKIADKRIYPAIDMTRSGTRKEDLLVDKIILNKMWVLRRII 415
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 205 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 264
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 265 SRHMQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 324
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 325 PKRFFGAAR 333
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 41 QAQAEELKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 100
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 101 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 150
>gi|383481614|ref|YP_005390529.1| transcription termination factor Rho [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933953|gb|AFC72456.1| transcription termination factor Rho [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 457
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 75 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 134
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 135 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 194
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 195 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 254
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV++KAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 255 RGEVVSSTFDEPASRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 314
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 315 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 374
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 375 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 418
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 208 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 267
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 268 SRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 327
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 328 PKRFFGAAR 336
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 44 QAQAEELKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 103
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 104 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 153
>gi|85860529|ref|YP_462731.1| transcription termination factor Rho [Syntrophus aciditrophicus SB]
gi|85723620|gb|ABC78563.1| transcription termination factor rho [Syntrophus aciditrophicus SB]
Length = 415
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/343 (67%), Positives = 290/343 (84%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G LE+LPDGFGFLR+ NY+ S DDIY+SPSQIRRFNL TGD + GE+R PK GE
Sbjct: 49 ISGSGVLEILPDGFGFLRAVDYNYLPSPDDIYISPSQIRRFNLRTGDTISGEVRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
+YFALLK+ +N E EL++++ LFDNL P++P L LE N EN + RI+DL PI
Sbjct: 109 KYFALLKVDTINFEASELARDKILFDNLIPVYPHDKLNLESN---PENYSTRIMDLFTPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+V+ P++GK+++LQ IAH+IT NH E I++V+LIDERPEEVT+MQRSV+GEV+
Sbjct: 166 GKGQRGLIVSPPRAGKTVLLQDIAHSITANHKEVILMVLLIDERPEEVTDMQRSVKGEVV 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P SGKVL+GG
Sbjct: 226 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPPSGKVLSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARNIE GGSLTII+TALI+TGSRMD+VI+EEFKGTGNME+HL+RR
Sbjct: 286 VDSNALHKPKRFFGAARNIENGGSLTIISTALIDTGSRMDEVIFEEFKGTGNMELHLDRR 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+A++RV+PA +L +SGTR+EELL + L +IW+LR++L +
Sbjct: 346 IADRRVFPAFDLIRSGTRKEELLTPKENLNRIWILRRILQEMN 388
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/283 (45%), Positives = 163/283 (57%), Gaps = 80/283 (28%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL V +R+Q+L+FAI + + + I G G LE+LPDGFGFLR+ NY+ S DDI
Sbjct: 20 DLNVPGAGGMRRQDLIFAILQAQAEKNGMISGSGVLEILPDGFGFLRAVDYNYLPSPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------- 488
Y+SPSQIRRFNL TG GE+R PK GE+YFALLK+ +N
Sbjct: 80 YISPSQIRRFNLRTGDTISGEVRPPKEGEKYFALLKVDTINFEASELARDKILFDNLIPV 139
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
V+ P++GK+++LQ IAH+IT NH E
Sbjct: 140 YPHDKLNLESNPENYSTRIMDLFTPIGKGQRGLIVSPPRAGKTVLLQDIAHSITANHKEV 199
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
I++V+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 200 ILMVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVI 259
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGKVL+GGVDSNAL +PKRFFGAAR
Sbjct: 260 LLDSITRLARAYNTVVPPSGKVLSGGVDSNALHKPKRFFGAAR 302
>gi|347753758|ref|YP_004861322.1| transcription termination factor Rho [Candidatus
Chloracidobacterium thermophilum B]
gi|347586276|gb|AEP10806.1| transcription termination factor Rho [Candidatus
Chloracidobacterium thermophilum B]
Length = 440
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/358 (64%), Positives = 302/358 (84%), Gaps = 4/358 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LE LPDGFGFLR+ NY+ DDIY+SPSQIR+F+L TGD + G+IR PK GE
Sbjct: 74 IFSEGVLECLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRKFDLRTGDTISGQIRPPKEGE 133
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFAL+K++ +N E P+L + R FDNLTPL+P K L +E + EN++GR++DL+ PI
Sbjct: 134 RYFALIKVEAINFEPPDLRRERVHFDNLTPLYPNKRLRME---STPENLSGRVLDLVTPI 190
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
G+GQRGL+VA P++GK+++LQ IA++IT NH E ++IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 191 GRGQRGLIVAPPRTGKTMLLQSIANSITRNHPEVMLIVLLIDERPEEVTDMQRSVQGEVV 250
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQVA+MV+EKAKRLVE +DV+ILLDSITRLARA+N +P SGK+L+GG
Sbjct: 251 SSTFDEPPTRHVQVADMVIEKAKRLVEHGRDVVILLDSITRLARAHNATVPPSGKILSGG 310
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQ+PKRFFGAARN+EEGGSLTIIATALI+TGSRMDDVI+EEFKGTGNME+HL+R+
Sbjct: 311 VDANALQKPKRFFGAARNLEEGGSLTIIATALIDTGSRMDDVIFEEFKGTGNMEIHLDRK 370
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKRT 364
L EKR++PA+++NKSGTR+EELL+ + L +I+VLR++L L ++ S + L ++RT
Sbjct: 371 LIEKRIFPAVDINKSGTRKEELLVPKEDLNRIFVLRRVLSPLSSVESMELMLSHLERT 428
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/283 (43%), Positives = 162/283 (57%), Gaps = 80/283 (28%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV LRKQEL+F I + +T+ IF +G LE LPDGFGFLR+ NY+ DDI
Sbjct: 45 ELEVPGAGSLRKQELVFKILQAQTERSGLIFSEGVLECLPDGFGFLRAPDYNYLPGPDDI 104
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------- 488
Y+SPSQIR+F+L TG G+IR PK GERYFAL+K++ +N
Sbjct: 105 YVSPSQIRKFDLRTGDTISGQIRPPKEGERYFALIKVEAINFEPPDLRRERVHFDNLTPL 164
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK+++LQ IA++IT NH E
Sbjct: 165 YPNKRLRMESTPENLSGRVLDLVTPIGRGQRGLIVAPPRTGKTMLLQSIANSITRNHPEV 224
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
++IV+LIDERPEEVT+MQRSV+GEV++STFDEP
Sbjct: 225 MLIVLLIDERPEEVTDMQRSVQGEVVSSTFDEPPTRHVQVADMVIEKAKRLVEHGRDVVI 284
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARA+N +P SGK+L+GGVD+NALQ+PKRFFGAAR
Sbjct: 285 LLDSITRLARAHNATVPPSGKILSGGVDANALQKPKRFFGAAR 327
>gi|399041318|ref|ZP_10736425.1| transcription termination factor Rho [Rhizobium sp. CF122]
gi|398060428|gb|EJL52253.1| transcription termination factor Rho [Rhizobium sp. CF122]
Length = 467
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/345 (67%), Positives = 296/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 98 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 157
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 158 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFRMELDVPTTKDLSPRVIDLVAPL 217
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 218 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 277
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 278 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 337
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 338 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 397
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 398 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTT 442
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 148/295 (50%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL------------ 426
L AE+ LEV + +RKQELMFAI K I G+G +EVL
Sbjct: 64 LAFAES----LEVENASTMRKQELMFAILKVLASQDVEIIGEGVVEVLQDGFGFLRSANA 119
Query: 427 -----PDGFGFLRSQGSNYMASSDDI------------------------YLSPSQIRR- 456
PD SQ + + D + P +IR
Sbjct: 120 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 179
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ ++ E+ VP + ++ + + + VA P++GK+++LQ+
Sbjct: 180 VHFDNLTPLYPNERFRMELDVPTTKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 239
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 240 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 299
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 300 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 354
>gi|15892682|ref|NP_360396.1| transcription termination factor Rho [Rickettsia conorii str.
Malish 7]
gi|34581631|ref|ZP_00143111.1| transcription termination factor [Rickettsia sibirica 246]
gi|157828571|ref|YP_001494813.1| transcription termination factor Rho [Rickettsia rickettsii str.
'Sheila Smith']
gi|165933285|ref|YP_001650074.1| transcription termination factor Rho [Rickettsia rickettsii str.
Iowa]
gi|229586787|ref|YP_002845288.1| transcription termination factor Rho [Rickettsia africae ESF-5]
gi|374319364|ref|YP_005065863.1| Transcription termination factor [Rickettsia slovaca 13-B]
gi|378721383|ref|YP_005286270.1| transcription termination factor Rho [Rickettsia rickettsii str.
Colombia]
gi|378722729|ref|YP_005287615.1| transcription termination factor Rho [Rickettsia rickettsii str.
Arizona]
gi|378724086|ref|YP_005288970.1| transcription termination factor Rho [Rickettsia rickettsii str.
Hauke]
gi|379016358|ref|YP_005292593.1| transcription termination factor Rho [Rickettsia rickettsii str.
Brazil]
gi|379017872|ref|YP_005294107.1| transcription termination factor Rho [Rickettsia rickettsii str.
Hino]
gi|379018971|ref|YP_005295205.1| transcription termination factor Rho [Rickettsia rickettsii str.
Hlp#2]
gi|379712446|ref|YP_005300785.1| transcription termination factor Rho [Rickettsia philipii str.
364D]
gi|383484028|ref|YP_005392941.1| transcription termination factor Rho [Rickettsia parkeri str.
Portsmouth]
gi|383751345|ref|YP_005426446.1| transcription termination factor Rho [Rickettsia slovaca str.
D-CWPP]
gi|81854101|sp|Q92HL2.1|RHO_RICCN RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|15619855|gb|AAL03297.1| transcription termination factor [Rickettsia conorii str. Malish 7]
gi|28263016|gb|EAA26520.1| transcription termination factor [Rickettsia sibirica 246]
gi|157801052|gb|ABV76305.1| transcription termination factor Rho [Rickettsia rickettsii str.
'Sheila Smith']
gi|165908372|gb|ABY72668.1| transcription termination factor rho [Rickettsia rickettsii str.
Iowa]
gi|228021837|gb|ACP53545.1| Transcription termination factor [Rickettsia africae ESF-5]
gi|360041913|gb|AEV92295.1| Transcription termination factor [Rickettsia slovaca 13-B]
gi|376324882|gb|AFB22122.1| transcription termination factor Rho [Rickettsia rickettsii str.
Brazil]
gi|376326407|gb|AFB23646.1| transcription termination factor Rho [Rickettsia rickettsii str.
Colombia]
gi|376327753|gb|AFB24991.1| transcription termination factor Rho [Rickettsia rickettsii str.
Arizona]
gi|376329091|gb|AFB26328.1| transcription termination factor Rho [Rickettsia philipii str.
364D]
gi|376330438|gb|AFB27674.1| transcription termination factor Rho [Rickettsia rickettsii str.
Hino]
gi|376331551|gb|AFB28785.1| transcription termination factor Rho [Rickettsia rickettsii str.
Hlp#2]
gi|376333101|gb|AFB30334.1| transcription termination factor Rho [Rickettsia rickettsii str.
Hauke]
gi|378936382|gb|AFC74882.1| transcription termination factor Rho [Rickettsia parkeri str.
Portsmouth]
gi|379774359|gb|AFD19715.1| transcription termination factor Rho [Rickettsia slovaca str.
D-CWPP]
Length = 458
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GVLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV++KAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEELKIENINSLLKQELVFAILKKSVEQGVLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|163796503|ref|ZP_02190463.1| Transcription termination factor [alpha proteobacterium BAL199]
gi|159178353|gb|EDP62897.1| Transcription termination factor [alpha proteobacterium BAL199]
Length = 419
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 289/344 (84%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G G LE LPDGFGFLRS SNY+ DDIY+SPSQ+RRF L TGD VEGEIR PK GE
Sbjct: 49 IYGQGVLETLPDGFGFLRSPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGEIRAPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNI--ESKENITGRIIDLIA 125
RYFALLK+ +N E P+ ++R FDNLTPL+P + L LE E+KE T R+IDLI+
Sbjct: 109 RYFALLKVNAINFEDPDAVRHRINFDNLTPLYPDEKLSLEVPFKPENKE-FTTRVIDLIS 167
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
P+GKGQR L+VA P++GK+++LQ+IAHAI NH E +IV+LIDERPEEVT+M RSV+GE
Sbjct: 168 PLGKGQRALIVAPPRTGKTVMLQNIAHAIAENHPEVYLIVLLIDERPEEVTDMDRSVKGE 227
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VI+STFDEPA RHV V EMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGKVLT
Sbjct: 228 VISSTFDEPATRHVAVTEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLT 287
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+
Sbjct: 288 GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILD 347
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R+LA+KR +PAI++ +SGTR+EELL+ L K+WVLR++L +
Sbjct: 348 RKLADKRTFPAIDITRSGTRKEELLVDKPVLSKMWVLRRILMQM 391
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAI NH E +IV+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 178 VAPPRTGKTVMLQNIAHAIAENHPEVYLIVLLIDERPEEVTDMDRSVKGEVISSTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 238 TRHVAVTEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 74/107 (69%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ + LRKQ++MFAI K+ I+G G LE LPDGFGFLRS SNY+ DDI
Sbjct: 20 ELEIENASTLRKQDMMFAILKQLADNDVAIYGQGVLETLPDGFGFLRSPESNYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+SPSQ+RRF L TG +GEIR PK GERYFALLK+ +N P +
Sbjct: 80 YVSPSQVRRFGLRTGDTVEGEIRAPKEGERYFALLKVNAINFEDPDA 126
>gi|417858372|ref|ZP_12503429.1| transcription termination factor Rho [Agrobacterium tumefaciens F2]
gi|338824376|gb|EGP58343.1| transcription termination factor Rho [Agrobacterium tumefaciens F2]
Length = 421
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 303/358 (84%), Gaps = 1/358 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKRT 364
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + TM + + +K+T
Sbjct: 352 VADKRIFPALDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQT 409
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 160/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LTFAES----LEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQIR R
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|238650225|ref|YP_002916076.1| transcription termination factor Rho [Rickettsia peacockii str.
Rustic]
gi|238624323|gb|ACR47029.1| transcription termination factor Rho [Rickettsia peacockii str.
Rustic]
Length = 458
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GVLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV++KAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEELKIENINSLLKQELVFAILKKSVEQGVLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|424911564|ref|ZP_18334941.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847595|gb|EJB00118.1| transcription termination factor Rho [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 421
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 303/358 (84%), Gaps = 1/358 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKRT 364
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + TM + + +K+T
Sbjct: 352 VADKRIFPALDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQT 409
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 160/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LTFAES----LEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQIR R
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|222087930|ref|YP_002546468.1| transcription termination factor Rho [Agrobacterium radiobacter
K84]
gi|398380848|ref|ZP_10538962.1| transcription termination factor Rho [Rhizobium sp. AP16]
gi|221725378|gb|ACM28534.1| transcription termination factor Rho [Agrobacterium radiobacter
K84]
gi|397720279|gb|EJK80837.1| transcription termination factor Rho [Rhizobium sp. AP16]
Length = 421
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFRMELDVPTNKDLSSRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH + +IV+LIDERPEEVT+MQRSVRGEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPDCYLIVLLIDERPEEVTDMQRSVRGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 163/295 (55%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKELASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKG------------------------------- 467
NY+ DDIY+SPSQIRRF+L TG +G
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 468 -----------------EIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
E+ VP N + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFRMELDVPTNKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH + +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 194 IAHSITANHPDCYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|338741366|ref|YP_004678328.1| transcription termination factor Rho [Hyphomicrobium sp. MC1]
gi|337761929|emb|CCB67764.1| transcription termination factor Rho [Hyphomicrobium sp. MC1]
Length = 421
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/339 (68%), Positives = 295/339 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD VEG+IR PK GE
Sbjct: 52 ITATGVVEVLQDGFGFLRSPEANYLPGPDDIYVSPSQIRRFALRTGDTVEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +K+++ FDNLTPL+P K L LE + ++++ R+ID+++PI
Sbjct: 112 RYFALLKVSNINFEDPEKAKHKSHFDNLTPLYPTKWLKLEIEDPTIKDLSPRVIDIVSPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+I+ NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSISVNHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQV+EMV+EKAKRLVE K+DVIILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPPSRHVQVSEMVIEKAKRLVEHKRDVIILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDSNALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KRV+PAI++ +SGTR+E+LLI D+L+K++VLR++L
Sbjct: 352 VSDKRVFPAIDVARSGTRKEDLLIPKDQLKKVYVLRRIL 390
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+I+ NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEP
Sbjct: 180 VAPPRTGKTVLLQNIAHSISVNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPP 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVDSNALQR
Sbjct: 240 SRHVQVSEMVIEKAKRLVEHKRDVIILLDSITRLGRAYNTVVPSSGKVLTGGVDSNALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 69/106 (65%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + LRKQELMFA K+ I G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTLRKQELMFATLKQLATQETEITATGVVEVLQDGFGFLRSPEANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
PSQIRRF L TG +G+IR PK GERYFALLK+ +N P+ K
Sbjct: 86 PSQIRRFALRTGDTVEGQIRSPKEGERYFALLKVSNINFEDPEKAK 131
>gi|182680467|ref|YP_001834613.1| transcription termination factor Rho [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636350|gb|ACB97124.1| transcription termination factor Rho [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 422
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/339 (69%), Positives = 294/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+A DDIY+SPSQIRRF L TGD VEG IR PK GE
Sbjct: 52 IIGEGVIEVLQDGFGFLRSPEANYLAGPDDIYVSPSQIRRFGLRTGDTVEGLIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + L LE + +K++++ R+ID++API
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPDERLKLEIDDPTKKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IA ++T NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRALIVAPPRTGKTVLLQNIAQSVTANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KRV+PAI++ +SGTR+EELL+ D L+K++VLR++L
Sbjct: 352 VADKRVFPAIDITRSGTRKEELLVPTDVLKKMYVLRRIL 390
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 156/311 (50%), Gaps = 87/311 (27%)
Query: 363 RTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGS 422
R I ++ LK L AE EV + +RKQELMFAI K+ I G+G
Sbjct: 2 REIKLQDLKLKSPTELLAFAEEH----EVENASIMRKQELMFAILKQLASREVEIIGEGV 57
Query: 423 LEVLPDGF------------------------------------GFLRS--QGSNYMA-- 442
+EVL DGF G +RS +G Y A
Sbjct: 58 IEVLQDGFGFLRSPEANYLAGPDDIYVSPSQIRRFGLRTGDTVEGLIRSPKEGERYFALL 117
Query: 443 SSDDI-YLSPSQIRR---FN----LHTGILWKGEIRVPKNGERYFALLKI--------KK 486
+ I + P +IR F+ L+ K EI P + ++ I +
Sbjct: 118 KVNTINFEDPEKIRHKVHFDNLTPLYPDERLKLEIDDPTKKDLSARVIDIVAPIGKGQRA 177
Query: 487 VNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDE 546
+ VA P++GK+++LQ+IA ++T NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDE
Sbjct: 178 LIVAPPRTGKTVLLQNIAQSVTANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDE 237
Query: 547 PA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNAL 579
PA L + +L RAYNTV+P+SGKVLTGGVD+NAL
Sbjct: 238 PAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANAL 297
Query: 580 QRPKRFFGAAR 590
QRPKRFFGAAR
Sbjct: 298 QRPKRFFGAAR 308
>gi|94496569|ref|ZP_01303145.1| transcription termination factor Rho [Sphingomonas sp. SKA58]
gi|94423929|gb|EAT08954.1| transcription termination factor Rho [Sphingomonas sp. SKA58]
Length = 418
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/345 (66%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I G+G++EVLPDGFGFLRS +N++A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GEQIMGEGTIEVLPDGFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ VN + P++ ++R FDNLTPL+P + L L+ + ++ + R+ID++
Sbjct: 106 DGERYFALTKLTTVNFDDPDVVRHRVNFDNLTPLYPDEKLRLDTLDPTVKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRTLIVAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVDKPTLSKMWVLRRILMQM 390
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 172/305 (56%), Gaps = 86/305 (28%)
Query: 369 KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD 428
K+L K LV T +L V LRKQ+LMFAI K + + GE+I G+G++EVLPD
Sbjct: 4 KDLKKTVPADLV---TMAEELGVEGASTLRKQDLMFAILKAEAENGEQIMGEGTIEVLPD 60
Query: 429 GFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
GFGFLRS +N++A DDIY+SP+Q+R+F L TG +GEIR PK+GERYFAL K+ VN
Sbjct: 61 GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLTTVN 120
Query: 489 VASP--------------------------------KSGKSI------------------ 498
P KS + I
Sbjct: 121 FDDPDVVRHRVNFDNLTPLYPDEKLRLDTLDPTVKDKSARVIDIVSPQGKGQRTLIVAPP 180
Query: 499 ------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---- 548
+LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 181 RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV 240
Query: 549 -----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRF 585
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF 300
Query: 586 FGAAR 590
FGAAR
Sbjct: 301 FGAAR 305
>gi|408788973|ref|ZP_11200685.1| transcription termination factor Rho [Rhizobium lupini HPC(L)]
gi|418297998|ref|ZP_12909838.1| transcription termination factor Rho [Agrobacterium tumefaciens
CCNWGS0286]
gi|355537368|gb|EHH06628.1| transcription termination factor Rho [Agrobacterium tumefaciens
CCNWGS0286]
gi|408485139|gb|EKJ93481.1| transcription termination factor Rho [Rhizobium lupini HPC(L)]
Length = 418
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 303/358 (84%), Gaps = 1/358 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKRT 364
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + TM + + +K+T
Sbjct: 349 VADKRIFPALDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQT 406
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 160/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 15 LTFAES----LEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEVLQDGFGFLRSANA 70
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQIR R
Sbjct: 71 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 130
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 131 VHFDNLTPLYPNERFKMELDVPTSKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 191 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 251 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|440228556|ref|YP_007335647.1| transcription termination factor Rho [Rhizobium tropici CIAT 899]
gi|440040067|gb|AGB73101.1| transcription termination factor Rho [Rhizobium tropici CIAT 899]
Length = 421
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 296/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E ++ + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFRMELDVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH + +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPDCYLIVLLIDERPEEVTDMQRSVRGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 160/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAES----LEVENASTMRKQELMFAILKELASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ ++ E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFRMELDVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH + +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 194 IAHSITANHPDCYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|383312623|ref|YP_005365424.1| transcription termination factor Rho [Candidatus Rickettsia
amblyommii str. GAT-30V]
gi|378931283|gb|AFC69792.1| transcription termination factor Rho [Candidatus Rickettsia
amblyommii str. GAT-30V]
Length = 458
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV++KAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 78/110 (70%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEGLKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|341583913|ref|YP_004764404.1| transcription termination factor Rho [Rickettsia heilongjiangensis
054]
gi|350273570|ref|YP_004884883.1| transcription termination factor rho [Rickettsia japonica YH]
gi|340808139|gb|AEK74727.1| transcription termination factor Rho [Rickettsia heilongjiangensis
054]
gi|348592783|dbj|BAK96744.1| transcription termination factor rho [Rickettsia japonica YH]
Length = 458
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GVLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPAKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV++KAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEELKIENINSLLKQELVFAILKKSVEQGVLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|170750678|ref|YP_001756938.1| transcription termination factor Rho [Methylobacterium
radiotolerans JCM 2831]
gi|170657200|gb|ACB26255.1| transcription termination factor Rho [Methylobacterium
radiotolerans JCM 2831]
Length = 428
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/345 (67%), Positives = 293/345 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G++EVL DGFGFLRS SNY+ DDIY+SP+QIRRF L TGD VEG IR PK+GE
Sbjct: 59 IIGSGTVEVLQDGFGFLRSSDSNYLPGPDDIYISPTQIRRFGLRTGDTVEGPIRGPKDGE 118
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE K++ FDNLTPL P K LE + +K++ + RIID++API
Sbjct: 119 RYFALLKVNTINFENPEKIKHKVHFDNLTPLFPTKRFKLELDNPTKKDFSPRIIDIVAPI 178
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 179 GKGQRALIVAPPRTGKTVLMQNIAQSITLNHPECYLIVLLIDERPEEVTDMQRSVKGEVI 238
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 239 ASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 298
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 299 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 358
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+++KR++PAI++ +SGTR+EELL+ D L+K +VLR++L + +T
Sbjct: 359 VSDKRIFPAIDITRSGTRKEELLVPPDSLKKTYVLRRILNPMGVT 403
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+MQRSV+GEVIASTFDEPA
Sbjct: 187 VAPPRTGKTVLMQNIAQSITLNHPECYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPA 246
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 247 TRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 306
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 307 PKRFFGAAR 315
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 79/118 (66%), Gaps = 5/118 (4%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++EV + +RKQELMFAI K+ I G G++EVL DGFGFLRS SNY+ DDI
Sbjct: 30 EVEVENASTMRKQELMFAILKQLAAKEVEIIGSGTVEVLQDGFGFLRSSDSNYLPGPDDI 89
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
Y+SP+QIRRF L TG +G IR PK+GERYFALLK+ +N +P+ ++H H
Sbjct: 90 YISPTQIRRFGLRTGDTVEGPIRGPKDGERYFALLKVNTINFENPEK-----IKHKVH 142
>gi|389879265|ref|YP_006372830.1| transcription termination factor Rho [Tistrella mobilis
KA081020-065]
gi|388530049|gb|AFK55246.1| transcription termination factor Rho [Tistrella mobilis
KA081020-065]
Length = 419
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/343 (69%), Positives = 291/343 (84%), Gaps = 1/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G LEVL DGFGFLR+ SNY+A DDIY+SP QIRRF L TGD V+G+IR PK GE
Sbjct: 49 IHGGGVLEVLQDGFGFLRAPESNYLAGPDDIYVSPQQIRRFGLKTGDTVDGQIRAPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG-RIIDLIAP 126
RYFALLKI +N + P+ ++++ FD+LTPL+P K L LE + SK+ T R+IDL+AP
Sbjct: 109 RYFALLKINSINFDAPDNARHKINFDDLTPLYPNKRLNLELSDPSKKTTTASRVIDLVAP 168
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
GKGQR L+VA P++GK+++LQ+IAHAI TNH E +IV+LIDERPEEVT+M RSV+GEV
Sbjct: 169 FGKGQRALIVAPPRTGKTVLLQNIAHAIATNHPECYLIVLLIDERPEEVTDMIRSVKGEV 228
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDS+TRLARAYNTV+P+SGKVLTG
Sbjct: 229 ISSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSVTRLARAYNTVVPSSGKVLTG 288
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R
Sbjct: 289 GVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELILDR 348
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+LA+KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 349 KLADKRTFPAIDIGKSGTRKEELLVDRGTLSKMWVLRRVLMPM 391
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAI TNH E +IV+LIDERPEEVT+M RSV+GEVI+STFDEPA
Sbjct: 178 VAPPRTGKTVLLQNIAHAIATNHPECYLIVLLIDERPEEVTDMIRSVKGEVISSTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 238 SRHVQVAEMVIEKAKRLVEHKRDVVILLDSVTRLARAYNTVVPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 74/111 (66%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + LRKQ+L+FAI K+ + I G G LEVL DGFGFLR+ SNY+A DDIY
Sbjct: 21 LGVENAGTLRKQDLLFAILKQSAEQNVAIHGGGVLEVLQDGFGFLRAPESNYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
+SP QIRRF L TG G+IR PK GERYFALLKI +N +P + + I
Sbjct: 81 VSPQQIRRFGLKTGDTVDGQIRAPKEGERYFALLKINSINFDAPDNARHKI 131
>gi|383482243|ref|YP_005391157.1| transcription termination factor Rho [Rickettsia montanensis str.
OSU 85-930]
gi|378934597|gb|AFC73098.1| transcription termination factor Rho [Rickettsia montanensis str.
OSU 85-930]
Length = 458
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV++KAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 ILDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEELKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|15890078|ref|NP_355759.1| transcription termination factor Rho [Agrobacterium fabrum str.
C58]
gi|335033768|ref|ZP_08527133.1| transcription termination factor [Agrobacterium sp. ATCC 31749]
gi|15158063|gb|AAK88544.1| transcription termination factor Rho [Agrobacterium fabrum str.
C58]
gi|333795059|gb|EGL66391.1| transcription termination factor [Agrobacterium sp. ATCC 31749]
Length = 421
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 302/358 (84%), Gaps = 1/358 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSSRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKRT 364
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + TM + + +K+T
Sbjct: 352 VADKRIFPALDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQT 409
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LTFAES----LEVENASTMRKQELMFAILKILASQDVEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLSPSQIRRFN---------------------------------------- 458
NY+ DDIY+SPSQIRRF+
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 459 --------LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
L+ +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|312115408|ref|YP_004013004.1| transcription termination factor Rho [Rhodomicrobium vannielii ATCC
17100]
gi|311220537|gb|ADP71905.1| transcription termination factor Rho [Rhodomicrobium vannielii ATCC
17100]
Length = 421
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/339 (69%), Positives = 293/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G +E L DGFGFLRS SNY+ DDIY+SPSQIRRF L TGD VEG+IR PK+GE
Sbjct: 52 ITGIGVVETLQDGFGFLRSPDSNYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRGPKDGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ K+N + PE +++ FDNLTPL+P L +E + ++++ R+ID++AP+
Sbjct: 112 RYFALLKVNKINFDDPEKIRHKVHFDNLTPLYPNDWLKMETDPPHSKDLSARVIDIVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPASRHVQVAEMVIEKAKRLVEHKLDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL+ETGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVETGSRMDEVIFEEFKGTGNSELVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KRV+PA+++ KSGTR+EELL+ +L+K++VLR++L
Sbjct: 352 VADKRVFPAMDIAKSGTRKEELLVPQAQLRKMYVLRRIL 390
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEVI+STFDEPA
Sbjct: 180 VAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 240 SRHVQVAEMVIEKAKRLVEHKLDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 72/106 (67%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+ V + LRKQELMFAI K+ I G G +E L DGFGFLRS SNY+ DDI
Sbjct: 23 EFAVENASALRKQELMFAILKQLAARDIEITGIGVVETLQDGFGFLRSPDSNYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK 493
Y+SPSQIRRF L TG +G+IR PK+GERYFALLK+ K+N P+
Sbjct: 83 YVSPSQIRRFGLRTGDTVEGQIRGPKDGERYFALLKVNKINFDDPE 128
>gi|87198146|ref|YP_495403.1| transcription termination factor Rho [Novosphingobium
aromaticivorans DSM 12444]
gi|87133827|gb|ABD24569.1| transcription termination factor Rho [Novosphingobium
aromaticivorans DSM 12444]
Length = 418
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/345 (66%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R++ L TGD VEGE+R PK
Sbjct: 46 GEEILGIGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEVRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFA+ ++ KVN + PE ++R FDNLTPL+P + L L+ + ++ + R+IDL+
Sbjct: 106 DGERYFAITRLIKVNFDDPEAVRHRVNFDNLTPLYPNERLKLDTLDPTVKDKSARVIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ++A AIT NH E +IV+L+DERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNMAKAITDNHPEVFLIVLLVDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ D+L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVPKDQLSKMWVLRRILMQM 390
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 170/286 (59%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV +R+Q+LMFAI K+ + GE I G G++EVLPDGFGFLRS +NY+A DDI
Sbjct: 20 ELEVEGASTMRRQDLMFAILKEMAEDGEEILGIGTIEVLPDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFA---LLKIK---------KVN------- 488
Y+SP+Q+R++ L TG +GE+R PK+GERYFA L+K+ +VN
Sbjct: 80 YVSPNQVRKWGLRTGDTVEGEVRAPKDGERYFAITRLIKVNFDDPEAVRHRVNFDNLTPL 139
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK+++LQ++A AIT NH
Sbjct: 140 YPNERLKLDTLDPTVKDKSARVIDLVSPQGKGQRALIVAPPRTGKTVLLQNMAKAITDNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+L+DERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 PEVFLIVLLVDERPEEVTDMQRSVKGEVISSTFDEPASRHVQVAEMVIEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|157964583|ref|YP_001499407.1| transcription termination factor Rho [Rickettsia massiliae MTU5]
gi|157844359|gb|ABV84860.1| Transcription termination factor [Rickettsia massiliae MTU5]
Length = 468
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 86 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 145
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 146 AGERYFALLKVNRVNFEDPFKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 205
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 206 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 265
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV++KAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 266 RGEVVSSTFDEPASRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 325
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 326 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 385
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 386 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 429
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 219 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 278
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 279 SRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 338
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 339 PKRFFGAAR 347
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 55 QAQAEELKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 114
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 115 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 164
>gi|153008192|ref|YP_001369407.1| transcription termination factor Rho [Ochrobactrum anthropi ATCC
49188]
gi|151560080|gb|ABS13578.1| transcription termination factor Rho [Ochrobactrum anthropi ATCC
49188]
Length = 421
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNSINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 397
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 74 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNSINFEDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|325294203|ref|YP_004280067.1| transcription termination factor Rho [Agrobacterium sp. H13-3]
gi|325062056|gb|ADY65747.1| transcription termination factor Rho [Agrobacterium sp. H13-3]
Length = 421
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 302/358 (84%), Gaps = 1/358 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELELPTSKDLSSRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKRT 364
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + TM + + +K+T
Sbjct: 352 VADKRIFPALDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQT 409
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 159/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 18 LTFAES----LEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELELPTSKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|404316691|ref|ZP_10964624.1| transcription termination factor Rho [Ochrobactrum anthropi
CTS-325]
Length = 418
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNSINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 394
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 15 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 70
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 71 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNSINFEDPEKIRHK 130
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 131 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 191 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 251 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|357386342|ref|YP_004901066.1| transcription termination factor Rho [Pelagibacterium halotolerans
B2]
gi|351594979|gb|AEQ53316.1| transcription termination factor Rho [Pelagibacterium halotolerans
B2]
Length = 421
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/339 (68%), Positives = 294/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVLPDGFGFLRS +NY+ DDIY+SPSQIRRF L TGD VEG+IR PK GE
Sbjct: 52 ITGEGVVEVLPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + L +E + ++ + R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPERVRHKINFDNLTPLYPDERLNMELADPTTKDRSARVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IA +I TNH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRALIVAPPRTGKTVLLQNIAQSIATNHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIE+GGSLTII+TALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEDGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KRV+PAI++ KSGTR+EELL++ D L+K++VLR++L
Sbjct: 352 VSDKRVFPAIDVTKSGTRKEELLVEPDILRKMYVLRRIL 390
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 139/294 (47%), Positives = 170/294 (57%), Gaps = 85/294 (28%)
Query: 382 AETQTI--DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSN 439
AE Q+ +L+V + LRKQELMFAI K+ I G+G +EVLPDGFGFLRS +N
Sbjct: 15 AELQSFAEELDVENANTLRKQELMFAILKQLATRDVEITGEGVVEVLPDGFGFLRSPDAN 74
Query: 440 YMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KV 487
Y+ DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ K+
Sbjct: 75 YLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKEGERYFALLKVNTINFEDPERVRHKI 134
Query: 488 N--------------------------------------------VASPKSGKSIILQHI 503
N VA P++GK+++LQ+I
Sbjct: 135 NFDNLTPLYPDERLNMELADPTTKDRSARVIDLVAPLGKGQRALIVAPPRTGKTVLLQNI 194
Query: 504 AHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------- 548
A +I TNH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 195 AQSIATNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPASRHVQVAEMVIEKAK 254
Query: 549 ------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 255 RLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|15967092|ref|NP_387445.1| transcription termination factor Rho [Sinorhizobium meliloti 1021]
gi|334318031|ref|YP_004550650.1| Baf family transcriptional activator [Sinorhizobium meliloti AK83]
gi|384531157|ref|YP_005715245.1| transcription termination factor Rho [Sinorhizobium meliloti
BL225C]
gi|384537874|ref|YP_005721959.1| transcription termination factor Rho [Sinorhizobium meliloti SM11]
gi|407722343|ref|YP_006842005.1| transcription termination factor Rho [Sinorhizobium meliloti Rm41]
gi|433615112|ref|YP_007191910.1| transcription termination factor Rho [Sinorhizobium meliloti GR4]
gi|15076365|emb|CAC47918.1| Probable transcription termination factor Rho protein
[Sinorhizobium meliloti 1021]
gi|333813333|gb|AEG06002.1| transcription termination factor Rho [Sinorhizobium meliloti
BL225C]
gi|334097025|gb|AEG55036.1| transcription termination factor Rho [Sinorhizobium meliloti AK83]
gi|336034766|gb|AEH80698.1| transcription termination factor Rho [Sinorhizobium meliloti SM11]
gi|407320575|emb|CCM69179.1| Transcription termination factor Rho [Sinorhizobium meliloti Rm41]
gi|429553302|gb|AGA08311.1| transcription termination factor Rho [Sinorhizobium meliloti GR4]
Length = 421
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDS+TRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSVTRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 159/286 (55%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV + +RKQELMFAI K + I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELEVENASTMRKQELMFAILKMLAQQEIEIIGEGVVEVLQDGFGFLRSANANYLPGPDDI 82
Query: 448 YLSPSQIRRFN------------------------------------------------L 459
Y+SPSQIRRF+ L
Sbjct: 83 YISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHKVHFDNLTPL 142
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ +K E+ VP + + ++ + + + VA P++GK+++LQ+IAH+IT NH
Sbjct: 143 YPNERFKMELEVPTSKDLSARVIDLVAPLGKGQRGLIVAPPRTGKTVLLQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSVTRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|265983059|ref|ZP_06095794.1| transcription termination factor Rho [Brucella sp. 83/13]
gi|306839731|ref|ZP_07472533.1| transcription termination factor Rho [Brucella sp. NF 2653]
gi|264661651|gb|EEZ31912.1| transcription termination factor Rho [Brucella sp. 83/13]
gi|306405191|gb|EFM61468.1| transcription termination factor Rho [Brucella sp. NF 2653]
Length = 421
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRTDLQKIFVLRRILAPMGTTD 397
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 74 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|398355661|ref|YP_006401125.1| transcription termination factor Rho [Sinorhizobium fredii USDA
257]
gi|390130987|gb|AFL54368.1| transcription termination factor Rho [Sinorhizobium fredii USDA
257]
Length = 421
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDS+TRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSVTRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 158/286 (55%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++EV + +RKQELMFAI K I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 EVEVENASTMRKQELMFAILKNLATQEIEIIGEGVVEVLQDGFGFLRSANANYLPGPDDI 82
Query: 448 YLSPSQIRRFN------------------------------------------------L 459
Y+SPSQIRRF+ L
Sbjct: 83 YISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHKVHFDNLTPL 142
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ +K E+ VP + + ++ + + + VA P++GK+++LQ+IAH+IT NH
Sbjct: 143 YPNERFKMELEVPTSKDLSARVIDLVAPLGKGQRGLIVAPPRTGKTVLLQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSVTRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|444309360|ref|ZP_21144999.1| transcription termination factor Rho [Ochrobactrum intermedium M86]
gi|443487418|gb|ELT50181.1| transcription termination factor Rho [Ochrobactrum intermedium M86]
Length = 418
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNSINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 394
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 15 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 70
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 71 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNSINFEDPEKIRHK 130
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 131 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 191 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 251 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|418053654|ref|ZP_12691710.1| transcription termination factor Rho [Hyphomicrobium denitrificans
1NES1]
gi|353211279|gb|EHB76679.1| transcription termination factor Rho [Hyphomicrobium denitrificans
1NES1]
Length = 421
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/339 (68%), Positives = 295/339 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD VEG+IR PK+GE
Sbjct: 52 ITATGVVEVLQDGFGFLRSPEANYLPGPDDIYVSPSQIRRFALRTGDTVEGQIRSPKDGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +K+++ FDNLTPL+P K L LE + ++++ R+ID+++P+
Sbjct: 112 RYFALLKVSNINFEDPEKAKHKSHFDNLTPLYPTKWLKLEIEDPTIKDLSSRVIDIVSPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRALIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQV+EMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPPSRHVQVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KRV+PAI++ +SGTR+E+LL+ D+L+K++VLR++L
Sbjct: 352 VSDKRVFPAIDVARSGTRKEDLLVPRDQLKKVYVLRRIL 390
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEP
Sbjct: 180 VAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPP 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVDSNALQR
Sbjct: 240 SRHVQVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDSNALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 70/106 (66%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + LRKQELMFA K+ I G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTLRKQELMFATLKQLATQETEITATGVVEVLQDGFGFLRSPEANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
PSQIRRF L TG +G+IR PK+GERYFALLK+ +N P+ K
Sbjct: 86 PSQIRRFALRTGDTVEGQIRSPKDGERYFALLKVSNINFEDPEKAK 131
>gi|262277824|ref|ZP_06055617.1| transcription termination factor Rho [alpha proteobacterium
HIMB114]
gi|262224927|gb|EEY75386.1| transcription termination factor Rho [alpha proteobacterium
HIMB114]
Length = 422
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/348 (68%), Positives = 292/348 (83%), Gaps = 3/348 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE+I G LE L DGFGFLR+ SNY+ DDIY+SPSQIRRF L GD VEGEIR PK
Sbjct: 46 GEQITATGVLETLQDGFGFLRAMESNYLPGPDDIYVSPSQIRRFGLRKGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE---RNIESKENITGRII 121
+ ERYFALLK+ K+N E PE +K++ FDNLTPL+P + + LE IE K ++T R+I
Sbjct: 106 DQERYFALLKVNKINFEDPEKTKHKINFDNLTPLYPDEKIKLEIEKTKIEKKTDVTARVI 165
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL++PIGKGQR L+VA P++GK++ILQ+IA++IT NH E +IV+LIDERPEEVT+MQR+
Sbjct: 166 DLVSPIGKGQRSLIVAPPRTGKTVILQNIANSITANHPEIYLIVLLIDERPEEVTDMQRT 225
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V GEV++STFDEPA RHVQVAEMV+EKAKRL E KKDV+ILLDSITRL RAYN V+P+SG
Sbjct: 226 VNGEVVSSTFDEPAQRHVQVAEMVIEKAKRLCEHKKDVVILLDSITRLGRAYNAVVPSSG 285
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARNIEEGGSLTII+TALIETGSRMD+VI+EEFKGTGN E
Sbjct: 286 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIISTALIETGSRMDEVIFEEFKGTGNSE 345
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
V L+R++A+KR YPAI++ KSGTR+EELL + D+L K+ VLR+++ +
Sbjct: 346 VVLDRKVADKRTYPAIDVAKSGTRKEELLFEKDELSKMNVLRRIINPM 393
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++ILQ+IA++IT NH E +IV+LIDERPEEVT+MQR+V GEV++STFDEPA
Sbjct: 180 VAPPRTGKTVILQNIANSITANHPEIYLIVLLIDERPEEVTDMQRTVNGEVVSSTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN V+P+SGKVLTGGVD+NALQR
Sbjct: 240 QRHVQVAEMVIEKAKRLCEHKKDVVILLDSITRLGRAYNAVVPSSGKVLTGGVDANALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD +++E + + +E S LRKQE++FAI KK + GE+I G LE L DGFG
Sbjct: 6 LKDKSPADLISEAEKLGIENPST--LRKQEILFAILKKLAEKGEQITATGVLETLQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLR+ SNY+ DDIY+SPSQIRRF L G +GEIR PK+ ERYFALLK+ K+N
Sbjct: 64 FLRAMESNYLPGPDDIYVSPSQIRRFGLRKGDTVEGEIRAPKDQERYFALLKVNKINFED 123
Query: 492 PKSGKSII 499
P+ K I
Sbjct: 124 PEKTKHKI 131
>gi|239833105|ref|ZP_04681434.1| transcription termination factor Rho [Ochrobactrum intermedium LMG
3301]
gi|239825372|gb|EEQ96940.1| transcription termination factor Rho [Ochrobactrum intermedium LMG
3301]
Length = 421
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNSINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 397
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 74 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNSINFEDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|154245768|ref|YP_001416726.1| transcription termination factor Rho [Xanthobacter autotrophicus
Py2]
gi|154159853|gb|ABS67069.1| transcription termination factor Rho [Xanthobacter autotrophicus
Py2]
Length = 422
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/340 (69%), Positives = 293/340 (86%), Gaps = 1/340 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD VEG+IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSPEANYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERN-IESKENITGRIIDLIAP 126
RYFALLK+ +N E PE ++++ FDNLTPL+P + L LE K++ + RIID++AP
Sbjct: 112 RYFALLKVNTINFEDPEKTRHKINFDNLTPLYPDERLKLEHEETVGKKDFSPRIIDIVAP 171
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQRGL+VA P++GK+++LQ+IA +IT NH E +IV+LIDERPEEVT+MQRSV+GEV
Sbjct: 172 IGKGQRGLIVAPPRTGKTVLLQNIAKSITANHPECFLIVLLIDERPEEVTDMQRSVKGEV 231
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTG
Sbjct: 232 VSSTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTG 291
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVD+NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGN EV L+R
Sbjct: 292 GVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEVILDR 351
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
++++KRV+PAI++ +SGTR+EELL+ D L+K++VLR++L
Sbjct: 352 KVSDKRVFPAIDITRSGTRKEELLVPADTLKKMYVLRRIL 391
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 156/285 (54%), Gaps = 84/285 (29%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
+V + LRKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDIY+
Sbjct: 25 QVENASTLRKQELMFAILKQLAATETEIIGEGVVEVLQDGFGFLRSPEANYLPGPDDIYV 84
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII---------- 499
SPSQIRRF L TG +G+IR PK GERYFALLK+ +N P+ + I
Sbjct: 85 SPSQIRRFGLRTGDTVEGQIRSPKEGERYFALLKVNTINFEDPEKTRHKINFDNLTPLYP 144
Query: 500 -----LQH------------------------------------------IAHAITTNHS 512
L+H IA +IT NH
Sbjct: 145 DERLKLEHEETVGKKDFSPRIIDIVAPIGKGQRGLIVAPPRTGKTVLLQNIAKSITANHP 204
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 205 ECFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHGRDV 264
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 265 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 309
>gi|261314901|ref|ZP_05954098.1| transcription termination factor Rho [Brucella pinnipedialis
M163/99/10]
gi|261303927|gb|EEY07424.1| transcription termination factor Rho [Brucella pinnipedialis
M163/99/10]
Length = 421
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDIFKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 397
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 74 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|418402603|ref|ZP_12976112.1| transcription termination factor Rho [Sinorhizobium meliloti
CCNWSX0020]
gi|359503431|gb|EHK75984.1| transcription termination factor Rho [Sinorhizobium meliloti
CCNWSX0020]
Length = 418
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDS+TRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSVTRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 394
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 159/286 (55%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV + +RKQELMFAI K + I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 20 ELEVENASTMRKQELMFAILKMLAQQEIEIIGEGVVEVLQDGFGFLRSANANYLPGPDDI 79
Query: 448 YLSPSQIRRFN------------------------------------------------L 459
Y+SPSQIRRF+ L
Sbjct: 80 YISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHKVHFDNLTPL 139
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ +K E+ VP + + ++ + + + VA P++GK+++LQ+IAH+IT NH
Sbjct: 140 YPNERFKMELEVPTSKDLSARVIDLVAPLGKGQRGLIVAPPRTGKTVLLQNIAHSITANH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 200 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHGRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSVTRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|227823857|ref|YP_002827830.1| transcription termination factor Rho [Sinorhizobium fredii NGR234]
gi|378828080|ref|YP_005190812.1| transcription termination factor rho [Sinorhizobium fredii HH103]
gi|227342859|gb|ACP27077.1| transcription termination factor Rho [Sinorhizobium fredii NGR234]
gi|365181132|emb|CCE97987.1| Transcription termination factor rho [Sinorhizobium fredii HH103]
Length = 421
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 157/286 (54%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV + +RKQELMF I K I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELEVENASTMRKQELMFGILKNLATQEIEIIGEGVVEVLQDGFGFLRSANANYLPGPDDI 82
Query: 448 YLSPSQIRRFN------------------------------------------------L 459
Y+SPSQIRRF+ L
Sbjct: 83 YISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHKVHFDNLTPL 142
Query: 460 HTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+ +K E+ VP + + ++ + + + VA P++GK+++LQ+IAH+IT NH
Sbjct: 143 YPNERFKMELEVPTSKDLSARVIDLVAPLGKGQRGLIVAPPRTGKTVLLQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|418409088|ref|ZP_12982401.1| transcription termination factor Rho [Agrobacterium tumefaciens 5A]
gi|358004405|gb|EHJ96733.1| transcription termination factor Rho [Agrobacterium tumefaciens 5A]
Length = 418
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 302/358 (84%), Gaps = 1/358 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELELPTSKDLSSRVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKRT 364
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + TM + + +K+T
Sbjct: 349 VADKRIFPALDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQT 406
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 159/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 15 LTFAES----LEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEVLQDGFGFLRSANA 70
Query: 439 NYMASSDDIYLS-----------------------------------------PSQIRR- 456
NY+ DDIY+S P +IR
Sbjct: 71 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 130
Query: 457 --FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
F+ L+ +K E+ +P + + ++ + + + VA P++GK+++LQ+
Sbjct: 131 VHFDNLTPLYPNERFKMELELPTSKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 191 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 251 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|381199297|ref|ZP_09906447.1| transcription termination factor Rho [Sphingobium yanoikuyae
XLDN2-5]
gi|427409387|ref|ZP_18899589.1| transcription termination factor Rho [Sphingobium yanoikuyae ATCC
51230]
gi|425711520|gb|EKU74535.1| transcription termination factor Rho [Sphingobium yanoikuyae ATCC
51230]
Length = 418
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/345 (66%), Positives = 297/345 (86%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G +I G+G++EVLPDGFGFLRS +N++A DDIY+SP+Q+RRF L TGD VEGEIR PK
Sbjct: 46 GAQIMGEGTIEVLPDGFGFLRSPEANFLAGPDDIYVSPNQVRRFGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFAL K+ VN + P++ ++R FDNLTPL+P++ L L+ + ++ + R+ID++
Sbjct: 106 DGERYFALTKLLSVNFDDPDVVRHRVNFDNLTPLYPEQKLRLDTLDPTIKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P+ GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRTLIVAPPRVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL++ L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVEKPTLSKMWVLRRILMQM 390
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 171/305 (56%), Gaps = 86/305 (28%)
Query: 369 KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD 428
K+L K LV T +L V LRKQ+LMFAI K + + G +I G+G++EVLPD
Sbjct: 4 KDLKKTVPADLV---TMAEELGVEGASTLRKQDLMFAILKAEAENGAQIMGEGTIEVLPD 60
Query: 429 GFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
GFGFLRS +N++A DDIY+SP+Q+RRF L TG +GEIR PK+GERYFAL K+ VN
Sbjct: 61 GFGFLRSPEANFLAGPDDIYVSPNQVRRFGLRTGDTVEGEIRAPKDGERYFALTKLLSVN 120
Query: 489 VASP--------------------------------KSGKSI------------------ 498
P KS + I
Sbjct: 121 FDDPDVVRHRVNFDNLTPLYPEQKLRLDTLDPTIKDKSARVIDIVSPQGKGQRTLIVAPP 180
Query: 499 ------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---- 548
+LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 181 RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV 240
Query: 549 -----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRF 585
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF 300
Query: 586 FGAAR 590
FGAAR
Sbjct: 301 FGAAR 305
>gi|261221113|ref|ZP_05935394.1| transcription termination factor Rho [Brucella ceti B1/94]
gi|260919697|gb|EEX86350.1| transcription termination factor Rho [Brucella ceti B1/94]
Length = 400
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 397
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 74 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|261755769|ref|ZP_05999478.1| transcription termination factor Rho [Brucella suis bv. 3 str. 686]
gi|261745522|gb|EEY33448.1| transcription termination factor Rho [Brucella suis bv. 3 str. 686]
Length = 413
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/345 (67%), Positives = 295/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 65 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 124
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 125 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 184
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 185 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 244
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 245 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 304
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 305 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 364
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 365 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTT 409
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 31 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 86
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 87 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 146
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 147 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 206
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 207 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 266
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 267 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 321
>gi|374328660|ref|YP_005078844.1| transcription termination factor rho [Pseudovibrio sp. FO-BEG1]
gi|359341448|gb|AEV34822.1| Transcription termination factor rho [Pseudovibrio sp. FO-BEG1]
Length = 421
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/342 (67%), Positives = 293/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG+IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ K+N E PE ++++ FDNLTPL+P + LE + ++I+ RIIDL+AP+
Sbjct: 112 RYFALLKVNKINFEDPEKARHKVHFDNLTPLYPDERFNLEIENNTSKDISARIIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+ A P++GK++ LQ+IA++ITTNH E +IV+LIDERPEEVT+MQR+V GEV+
Sbjct: 172 GKGQRALITAPPRTGKTVFLQNIANSITTNHPECYLIVLLIDERPEEVTDMQRTVNGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRL E +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPASRHVQVAEMVIEKAKRLTEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+++KRV+PA+++ +SGTR+EELL+ DKL+K +VLR++L +
Sbjct: 352 ISDKRVFPAVDIQRSGTRKEELLVPADKLKKTFVLRRILSQM 393
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
A P++GK++ LQ+IA++ITTNH E +IV+LIDERPEEVT+MQR+V GEV++STFDEPA
Sbjct: 180 TAPPRTGKTVFLQNIANSITTNHPECYLIVLLIDERPEEVTDMQRTVNGEVVSSTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 240 SRHVQVAEMVIEKAKRLTEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
EV + +RKQEL+FAI K+ + I G+G +EVL DGFGFLRS +NY+ DDIY+
Sbjct: 25 EVENASTMRKQELLFAILKRLAEQDIEIIGEGVVEVLQDGFGFLRSPDANYLPGPDDIYV 84
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
SPSQIRRF+L TG +G+IR PK GERYFALLK+ K+N P+ +
Sbjct: 85 SPSQIRRFSLRTGDTVEGQIRSPKEGERYFALLKVNKINFEDPEKAR 131
>gi|420237945|ref|ZP_14742388.1| transcription termination factor Rho [Rhizobium sp. CF080]
gi|398089327|gb|EJL79848.1| transcription termination factor Rho [Rhizobium sp. CF080]
Length = 426
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 57 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 116
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 117 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPL 176
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 177 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 236
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 237 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 296
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 297 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 356
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++P++++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 357 VADKRIFPSMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 402
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +
Sbjct: 23 LTFAES----LEVENASTMRKQELMFAILKVLASQDVEIIGEGVVEVLQDGFGFLRSANA 78
Query: 439 NYMASSDDIYLSPSQIRRFN---------------------------------------- 458
NY+ DDIY+SPSQIRRF+
Sbjct: 79 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 138
Query: 459 --------LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
L+ +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 139 VHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 198
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 199 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKA 258
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 259 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 313
>gi|307211525|gb|EFN87613.1| Transcription termination factor rho [Harpegnathos saltator]
Length = 743
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 296/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +E+L DGFGFLRS +NY+ DDIYLSPSQIRRF+L TGD VEG IR PK GE
Sbjct: 374 IIGEGVVEILQDGFGFLRSADANYLPGPDDIYLSPSQIRRFSLKTGDTVEGPIRSPKEGE 433
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E P+ +++ FDNLTPL+P + L +E + + ++++ R+IDL+AP+
Sbjct: 434 RYFALLKVNTINFEDPDTIRHKIHFDNLTPLYPNERLRMEMDNPTGKDMSQRVIDLVAPL 493
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 494 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 553
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 554 SSTFDEPASRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 613
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 614 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIVLDRK 673
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 674 IADKRIFPAMDILKSGTRKEDLLVARQDLQKIFVLRRILSPMGTT 718
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 502 VAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPA 561
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 562 SRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 621
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 622 PKRFFGAAR 630
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 74/107 (69%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV + +RKQELMFAI KK I G+G +E+L DGFGFLRS +NY+ DDI
Sbjct: 345 ELEVENANAMRKQELMFAILKKLALQEIEIIGEGVVEILQDGFGFLRSADANYLPGPDDI 404
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
YLSPSQIRRF+L TG +G IR PK GERYFALLK+ +N P +
Sbjct: 405 YLSPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTINFEDPDT 451
>gi|17986287|ref|NP_538921.1| transcription termination factor Rho [Brucella melitensis bv. 1
str. 16M]
gi|23502912|ref|NP_699039.1| transcription termination factor Rho [Brucella suis 1330]
gi|62290908|ref|YP_222701.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
9-941]
gi|82700819|ref|YP_415393.1| transcription termination factor Rho [Brucella melitensis biovar
Abortus 2308]
gi|161619978|ref|YP_001593865.1| transcription termination factor Rho [Brucella canis ATCC 23365]
gi|189025121|ref|YP_001935889.1| transcription termination factor Rho [Brucella abortus S19]
gi|225626443|ref|ZP_03784482.1| transcription termination factor Rho [Brucella ceti str. Cudo]
gi|225853494|ref|YP_002733727.1| transcription termination factor Rho [Brucella melitensis ATCC
23457]
gi|237816413|ref|ZP_04595406.1| transcription termination factor Rho [Brucella abortus str. 2308 A]
gi|256263024|ref|ZP_05465556.1| transcription termination factor Rho [Brucella melitensis bv. 2
str. 63/9]
gi|256370462|ref|YP_003107973.1| transcription termination factor Rho [Brucella microti CCM 4915]
gi|260546170|ref|ZP_05821910.1| transcription termination factor Rho [Brucella abortus NCTC 8038]
gi|260562969|ref|ZP_05833455.1| transcription termination factor Rho [Brucella melitensis bv. 1
str. 16M]
gi|260567465|ref|ZP_05837935.1| transcription termination factor Rho [Brucella suis bv. 4 str. 40]
gi|260755737|ref|ZP_05868085.1| transcription termination factor Rho [Brucella abortus bv. 6 str.
870]
gi|260758961|ref|ZP_05871309.1| transcription termination factor Rho [Brucella abortus bv. 4 str.
292]
gi|260760685|ref|ZP_05873028.1| transcription termination factor Rho [Brucella abortus bv. 2 str.
86/8/59]
gi|260884763|ref|ZP_05896377.1| transcription termination factor Rho [Brucella abortus bv. 9 str.
C68]
gi|261215014|ref|ZP_05929295.1| transcription termination factor Rho [Brucella abortus bv. 3 str.
Tulya]
gi|261217883|ref|ZP_05932164.1| transcription termination factor Rho [Brucella ceti M13/05/1]
gi|261316540|ref|ZP_05955737.1| transcription termination factor Rho [Brucella pinnipedialis B2/94]
gi|261321267|ref|ZP_05960464.1| transcription termination factor Rho [Brucella ceti M644/93/1]
gi|261324005|ref|ZP_05963202.1| transcription termination factor Rho [Brucella neotomae 5K33]
gi|261758998|ref|ZP_06002707.1| transcription termination factor Rho [Brucella sp. F5/99]
gi|265987614|ref|ZP_06100171.1| transcription termination factor Rho [Brucella pinnipedialis
M292/94/1]
gi|265992089|ref|ZP_06104646.1| transcription termination factor Rho [Brucella melitensis bv. 1
str. Rev.1]
gi|265993825|ref|ZP_06106382.1| transcription termination factor Rho [Brucella melitensis bv. 3
str. Ether]
gi|265997074|ref|ZP_06109631.1| transcription termination factor Rho [Brucella ceti M490/95/1]
gi|297247292|ref|ZP_06931010.1| transcription termination factor Rho [Brucella abortus bv. 5 str.
B3196]
gi|306843480|ref|ZP_07476081.1| transcription termination factor Rho [Brucella inopinata BO1]
gi|340791646|ref|YP_004757111.1| transcription termination factor Rho [Brucella pinnipedialis B2/94]
gi|376272220|ref|YP_005150798.1| transcription termination factor Rho [Brucella abortus A13334]
gi|376275350|ref|YP_005115789.1| transcription termination factor Rho [Brucella canis HSK A52141]
gi|376281707|ref|YP_005155713.1| transcription termination factor Rho [Brucella suis VBI22]
gi|384212412|ref|YP_005601496.1| transcription termination factor Rho [Brucella melitensis M5-90]
gi|384225699|ref|YP_005616863.1| transcription termination factor Rho [Brucella suis 1330]
gi|384409513|ref|YP_005598134.1| transcription termination factor Rho [Brucella melitensis M28]
gi|384446051|ref|YP_005604770.1| transcription termination factor Rho [Brucella melitensis NI]
gi|423167973|ref|ZP_17154676.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI435a]
gi|423169651|ref|ZP_17156326.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI474]
gi|423175359|ref|ZP_17162028.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI486]
gi|423177791|ref|ZP_17164436.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI488]
gi|423179084|ref|ZP_17165725.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI010]
gi|423182215|ref|ZP_17168852.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI016]
gi|423186843|ref|ZP_17173457.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI021]
gi|423190721|ref|ZP_17177329.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI259]
gi|17981869|gb|AAL51185.1| transcription termination factor rho [Brucella melitensis bv. 1
str. 16M]
gi|23348944|gb|AAN30954.1| transcription termination factor Rho [Brucella suis 1330]
gi|62197040|gb|AAX75340.1| Rho, transcription termination factor Rho [Brucella abortus bv. 1
str. 9-941]
gi|82616920|emb|CAJ12021.1| H+-transporting two-sector ATPase, alpha/beta subunit, central
region:ATP/GTP-binding site motif A (P-loop):Cold-shock
DNA-bi [Brucella melitensis biovar Abortus 2308]
gi|161336789|gb|ABX63094.1| Transcription termination factor rho [Brucella canis ATCC 23365]
gi|189020693|gb|ACD73415.1| transcription termination factor Rho [Brucella abortus S19]
gi|225618100|gb|EEH15143.1| transcription termination factor Rho [Brucella ceti str. Cudo]
gi|225641859|gb|ACO01773.1| transcription termination factor Rho [Brucella melitensis ATCC
23457]
gi|237788480|gb|EEP62695.1| transcription termination factor Rho [Brucella abortus str. 2308 A]
gi|256000625|gb|ACU49024.1| transcription termination factor Rho [Brucella microti CCM 4915]
gi|260096277|gb|EEW80153.1| transcription termination factor Rho [Brucella abortus NCTC 8038]
gi|260152985|gb|EEW88077.1| transcription termination factor Rho [Brucella melitensis bv. 1
str. 16M]
gi|260156983|gb|EEW92063.1| transcription termination factor Rho [Brucella suis bv. 4 str. 40]
gi|260669279|gb|EEX56219.1| transcription termination factor Rho [Brucella abortus bv. 4 str.
292]
gi|260671117|gb|EEX57938.1| transcription termination factor Rho [Brucella abortus bv. 2 str.
86/8/59]
gi|260675845|gb|EEX62666.1| transcription termination factor Rho [Brucella abortus bv. 6 str.
870]
gi|260874291|gb|EEX81360.1| transcription termination factor Rho [Brucella abortus bv. 9 str.
C68]
gi|260916621|gb|EEX83482.1| transcription termination factor Rho [Brucella abortus bv. 3 str.
Tulya]
gi|260922972|gb|EEX89540.1| transcription termination factor Rho [Brucella ceti M13/05/1]
gi|261293957|gb|EEX97453.1| transcription termination factor Rho [Brucella ceti M644/93/1]
gi|261295763|gb|EEX99259.1| transcription termination factor Rho [Brucella pinnipedialis B2/94]
gi|261299985|gb|EEY03482.1| transcription termination factor Rho [Brucella neotomae 5K33]
gi|261738982|gb|EEY26978.1| transcription termination factor Rho [Brucella sp. F5/99]
gi|262551542|gb|EEZ07532.1| transcription termination factor Rho [Brucella ceti M490/95/1]
gi|262764806|gb|EEZ10727.1| transcription termination factor Rho [Brucella melitensis bv. 3
str. Ether]
gi|263003155|gb|EEZ15448.1| transcription termination factor Rho [Brucella melitensis bv. 1
str. Rev.1]
gi|263092896|gb|EEZ17071.1| transcription termination factor Rho [Brucella melitensis bv. 2
str. 63/9]
gi|264659811|gb|EEZ30072.1| transcription termination factor Rho [Brucella pinnipedialis
M292/94/1]
gi|297174461|gb|EFH33808.1| transcription termination factor Rho [Brucella abortus bv. 5 str.
B3196]
gi|306276171|gb|EFM57871.1| transcription termination factor Rho [Brucella inopinata BO1]
gi|326410060|gb|ADZ67125.1| transcription termination factor Rho [Brucella melitensis M28]
gi|326539777|gb|ADZ87992.1| transcription termination factor Rho [Brucella melitensis M5-90]
gi|340560105|gb|AEK55343.1| transcription termination factor Rho [Brucella pinnipedialis B2/94]
gi|343383879|gb|AEM19371.1| transcription termination factor Rho [Brucella suis 1330]
gi|349744040|gb|AEQ09583.1| transcription termination factor Rho [Brucella melitensis NI]
gi|358259306|gb|AEU07041.1| transcription termination factor Rho [Brucella suis VBI22]
gi|363399826|gb|AEW16796.1| transcription termination factor Rho [Brucella abortus A13334]
gi|363403917|gb|AEW14212.1| transcription termination factor Rho [Brucella canis HSK A52141]
gi|374535803|gb|EHR07324.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI486]
gi|374539722|gb|EHR11225.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI435a]
gi|374543330|gb|EHR14813.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI474]
gi|374548993|gb|EHR20439.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI488]
gi|374552028|gb|EHR23457.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI016]
gi|374552400|gb|EHR23828.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI010]
gi|374554491|gb|EHR25902.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI259]
gi|374557555|gb|EHR28951.1| transcription termination factor Rho [Brucella abortus bv. 1 str.
NI021]
Length = 421
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 397
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 74 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|114705486|ref|ZP_01438389.1| transcription termination factor Rho [Fulvimarina pelagi HTCC2506]
gi|114538332|gb|EAU41453.1| transcription termination factor Rho [Fulvimarina pelagi HTCC2506]
Length = 419
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/349 (67%), Positives = 295/349 (84%), Gaps = 1/349 (0%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
E I G+G +E+L DGF FLRS +NY+ DDIY+SPSQIR+F L TGD VEG IR PK
Sbjct: 47 EEIIGEGVVEILQDGFAFLRSPDANYLPGPDDIYVSPSQIRKFQLKTGDTVEGPIRSPKE 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE-RNIESKENITGRIIDLI 124
GERYFALLK+ +N + PE ++++ FDNLTPL+P + +E + SK++++GR+IDL+
Sbjct: 107 GERYFALLKVNTINFDDPEKIRHKSHFDNLTPLYPDERFKMEIGDPTSKKDMSGRVIDLV 166
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP+GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRG
Sbjct: 167 APLGKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRG 226
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHV VAEMV+EKAKRLVE +DV+ILLDSITRL RAYNT +P+SGKVL
Sbjct: 227 EVVSSTFDEPAQRHVAVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTTVPSSGKVL 286
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 287 TGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 346
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+R++A+KR YPA+++ KSGTR+E+LLIQ LQKI+VLR++L + T
Sbjct: 347 DRKVADKRTYPAMDILKSGTRKEDLLIQRSDLQKIFVLRRILSQMGTTD 395
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 168/303 (55%), Gaps = 86/303 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ P ++A + ++E SV LRKQELMFAI K+ E I G+G +E+L DGF
Sbjct: 6 LKNKSAPELIAFAEENEVENASV--LRKQELMFAILKQLASQDEEIIGEGVVEILQDGFA 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS +NY+ DDIY+SPSQIR+F L TG +G IR PK GERYFALLK+ +N
Sbjct: 64 FLRSPDANYLPGPDDIYVSPSQIRKFQLKTGDTVEGPIRSPKEGERYFALLKVNTINFDD 123
Query: 492 PK---------------------------------SGKSI-------------------- 498
P+ SG+ I
Sbjct: 124 PEKIRHKSHFDNLTPLYPDERFKMEIGDPTSKKDMSGRVIDLVAPLGKGQRGLIVAPPRT 183
Query: 499 ----ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------ 548
+LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 184 GKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAQRHVAV 243
Query: 549 ---------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFG 587
L + +L RAYNT +P+SGKVLTGGVD+NALQRPKRFFG
Sbjct: 244 AEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTTVPSSGKVLTGGVDANALQRPKRFFG 303
Query: 588 AAR 590
AAR
Sbjct: 304 AAR 306
>gi|150398398|ref|YP_001328865.1| transcription termination factor Rho [Sinorhizobium medicae WSM419]
gi|150029913|gb|ABR62030.1| transcription termination factor Rho [Sinorhizobium medicae WSM419]
Length = 421
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++P++++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPSMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 163/295 (55%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE +LEV + +RKQELMFAI K + I G+G +EVL DGFGFLRS +
Sbjct: 18 LALAE----ELEVENASTMRKQELMFAILKMLAQQEIEIIGEGVVEVLQDGFGFLRSANA 73
Query: 439 NYMASSDDIYLSPSQIRRFN---------------------------------------- 458
NY+ DDIY+SPSQIRRF+
Sbjct: 74 NYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHK 133
Query: 459 --------LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
L+ +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|379713804|ref|YP_005302142.1| transcription termination factor Rho [Rickettsia massiliae str.
AZT80]
gi|376334450|gb|AFB31682.1| transcription termination factor Rho [Rickettsia massiliae str.
AZT80]
Length = 458
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPFKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV++KAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEELKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>gi|339018415|ref|ZP_08644551.1| transcription termination factor Rho [Acetobacter tropicalis NBRC
101654]
gi|338752498|dbj|GAA07855.1| transcription termination factor Rho [Acetobacter tropicalis NBRC
101654]
Length = 431
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/357 (65%), Positives = 295/357 (82%), Gaps = 13/357 (3%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
+ I+GDG+LE+L DGFG+LRS SNY+ DDIY+SP+Q+RRF L TGD VEG+IR P++
Sbjct: 47 QAIYGDGTLEILHDGFGYLRSPESNYLPGPDDIYISPTQVRRFGLRTGDTVEGQIRAPRD 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE-------------RNIES 112
GERYF+LLKI +N E PE ++R FDNLTPL+P++ L +E + +S
Sbjct: 107 GERYFSLLKINSINFEPPEAVRHRINFDNLTPLYPERRLQMEVENQAPAVSETKGKKGKS 166
Query: 113 KENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP 172
++ T R+IDL+APIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+LIDERP
Sbjct: 167 TQDFTPRVIDLVAPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPECFLIVLLIDERP 226
Query: 173 EEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232
EEVT+M RSVRGEVI+STFDEPA+RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARA
Sbjct: 227 EEVTDMARSVRGEVISSTFDEPAHRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARA 286
Query: 233 YNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYE 292
YNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+E
Sbjct: 287 YNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFE 346
Query: 293 EFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EE+L+ L K+WVLR++L +
Sbjct: 347 EFKGTGNSELILDRKLADKRTFPAIDITKSGTRKEEMLVDRATLSKMWVLRRILAPM 403
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEVI+STFDEPA
Sbjct: 190 VAPPRTGKTVMLQSIASSISANHPECFLIVLLIDERPEEVTDMARSVRGEVISSTFDEPA 249
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 250 HRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 309
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 310 PKRFFGAAR 318
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 77/107 (71%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL + + LRKQ++MFAI K + I+GDG+LE+L DGFG+LRS SNY+ DDI
Sbjct: 20 DLNIENASSLRKQDMMFAILKALADNDQAIYGDGTLEILHDGFGYLRSPESNYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+SP+Q+RRF L TG +G+IR P++GERYF+LLKI +N P++
Sbjct: 80 YISPTQVRRFGLRTGDTVEGQIRAPRDGERYFSLLKINSINFEPPEA 126
>gi|402703517|ref|ZP_10851496.1| transcription termination factor Rho [Rickettsia helvetica C9P9]
Length = 458
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 295/344 (85%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDSSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 78/106 (73%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEELKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVN 150
>gi|326386161|ref|ZP_08207785.1| transcription termination factor Rho [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209386|gb|EGD60179.1| transcription termination factor Rho [Novosphingobium
nitrogenifigens DSM 19370]
Length = 418
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R++ L TGD VEGEIR PK
Sbjct: 46 GEEILGIGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFA+ ++ KVN + P+ ++R FDNLTPL+P + L L+ + ++ + R+IDL+
Sbjct: 106 DGERYFAITRLIKVNFDDPDAVRHRVNFDNLTPLYPNERLRLDTLDPTVKDKSARVIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ+IA AIT NH E +IV+LIDERPEEVT+MQRSV G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVNG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ D+L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVPRDQLTKMWVLRRILMQM 390
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 168/286 (58%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V +R+Q+LMFAI K+ + GE I G G++EVLPDGFGFLRS +NY+A DDI
Sbjct: 20 ELGVEGASTMRRQDLMFAILKEVAEDGEEILGIGTIEVLPDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFA---LLKIK---------KVN------- 488
Y+SP+Q+R++ L TG +GEIR PK+GERYFA L+K+ +VN
Sbjct: 80 YVSPNQVRKWGLRTGDTVEGEIRAPKDGERYFAITRLIKVNFDDPDAVRHRVNFDNLTPL 139
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK+++LQ+IA AIT NH
Sbjct: 140 YPNERLRLDTLDPTVKDKSARVIDLVSPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV GEVI+STFDEPA
Sbjct: 200 PEVFLIVLLIDERPEEVTDMQRSVNGEVISSTFDEPASRHVQVAEMVIEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|338708150|ref|YP_004662351.1| transcription termination factor Rho [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294954|gb|AEI38061.1| transcription termination factor Rho [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 418
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/349 (66%), Positives = 297/349 (85%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ ++G++I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R+F L TGD VEGEI
Sbjct: 42 QAEMGDQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL K+ VN + P+ ++R FDNLTPL+P + L L+ N + ++ + R+
Sbjct: 102 RGPKDSERYFALTKLISVNFDNPDNVRHRVNFDNLTPLYPSERLNLDTNDPTNKDKSARV 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
ID++AP GKGQR L+VA P+ GK+++LQ+IA AI+ NH E +IV+LIDERPEEVT+MQR
Sbjct: 162 IDIVAPQGKGQRSLIVAPPRVGKTVLLQNIARAISENHPEVFLIVLLIDERPEEVTDMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEVI+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDS+TRL RAYNTV+P+S
Sbjct: 222 SVKGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSVTRLGRAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EV L+R++A+KR++PA+++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 342 EVVLDRKVADKRIFPAMDVGKSGTRKEELLVDKSTLSKMWVLRRILMQM 390
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 165/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + LRKQ+L+FAI K + ++G++I G G++EVLPDGFGFLRS +NY+A DDI
Sbjct: 20 ELGIEGASTLRKQDLLFAILKVQAEMGDQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP--------------- 492
Y+SP+Q+R+F L TG +GEIR PK+ ERYFAL K+ VN +P
Sbjct: 80 YVSPNQVRKFGLRTGDTVEGEIRGPKDSERYFALTKLISVNFDNPDNVRHRVNFDNLTPL 139
Query: 493 ------------------------------KSGKSII-----------LQHIAHAITTNH 511
K +S+I LQ+IA AI+ NH
Sbjct: 140 YPSERLNLDTNDPTNKDKSARVIDIVAPQGKGQRSLIVAPPRVGKTVLLQNIARAISENH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 PEVFLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSVTRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|157273418|gb|ABV27317.1| transcription termination factor Rho [Candidatus
Chloracidobacterium thermophilum]
Length = 440
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/358 (64%), Positives = 302/358 (84%), Gaps = 4/358 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LE LPDGFGFLR+ NY+ DDIY+SPSQIR+F+L TGD + G+IR PK GE
Sbjct: 74 IFSEGVLECLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRKFDLRTGDTISGQIRPPKEGE 133
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFAL+K++ +N E P+L + R FDNLTPL+P K L +E + +N++GRI+DLI PI
Sbjct: 134 RYFALIKVEAINYEPPDLRRERVHFDNLTPLYPNKRLRME---STPDNLSGRILDLITPI 190
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
G+GQRGL+VA P++GK+++LQ IA++I+ NH E ++IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 191 GRGQRGLIVAPPRTGKTMLLQSIANSISRNHPEVMLIVLLIDERPEEVTDMQRSVQGEVI 250
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQVA+MV+EKAKRLVE +DV+ILLDS+TRLARA+N +P SGK+L+GG
Sbjct: 251 SSTFDEPPTRHVQVADMVIEKAKRLVEHGRDVVILLDSLTRLARAHNATVPPSGKILSGG 310
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQ+PKRFFGAARN+EEGGSLTIIATALI+TGSRMDDVI+EEFKGTGNME+HL+R+
Sbjct: 311 VDANALQKPKRFFGAARNLEEGGSLTIIATALIDTGSRMDDVIFEEFKGTGNMEIHLDRK 370
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKRT 364
L EKR++PA+++NKSGTR+EELL+ + L +I+VLR++L L ++ S + + ++RT
Sbjct: 371 LVEKRIFPAVDINKSGTRKEELLVPKEDLNRIFVLRRVLSPLSSVESMELMISHLERT 428
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/283 (44%), Positives = 163/283 (57%), Gaps = 80/283 (28%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV S LRKQEL+F I + +T+ IF +G LE LPDGFGFLR+ NY+ DDI
Sbjct: 45 ELEVPSASSLRKQELVFKILQAQTERSGLIFSEGVLECLPDGFGFLRAPDYNYLPGPDDI 104
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------- 488
Y+SPSQIR+F+L TG G+IR PK GERYFAL+K++ +N
Sbjct: 105 YVSPSQIRKFDLRTGDTISGQIRPPKEGERYFALIKVEAINYEPPDLRRERVHFDNLTPL 164
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK+++LQ IA++I+ NH E
Sbjct: 165 YPNKRLRMESTPDNLSGRILDLITPIGRGQRGLIVAPPRTGKTMLLQSIANSISRNHPEV 224
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
++IV+LIDERPEEVT+MQRSV+GEVI+STFDEP
Sbjct: 225 MLIVLLIDERPEEVTDMQRSVQGEVISSTFDEPPTRHVQVADMVIEKAKRLVEHGRDVVI 284
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARA+N +P SGK+L+GGVD+NALQ+PKRFFGAAR
Sbjct: 285 LLDSLTRLARAHNATVPPSGKILSGGVDANALQKPKRFFGAAR 327
>gi|254472127|ref|ZP_05085527.1| transcription termination factor Rho [Pseudovibrio sp. JE062]
gi|211958410|gb|EEA93610.1| transcription termination factor Rho [Pseudovibrio sp. JE062]
Length = 390
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/342 (67%), Positives = 293/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG+IR PK GE
Sbjct: 21 IIGEGVVEVLQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKEGE 80
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ K+N E PE ++++ FDNLTPL+P + LE + ++I+ RIIDL+AP+
Sbjct: 81 RYFALLKVNKINFEDPEKARHKVHFDNLTPLYPDERFNLEIENNTSKDISARIIDLVAPL 140
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+ A P++GK++ LQ+IA++ITTNH E +IV+LIDERPEEVT+MQR+V GEV+
Sbjct: 141 GKGQRALITAPPRTGKTVFLQNIANSITTNHPECYLIVLLIDERPEEVTDMQRTVNGEVV 200
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRL E +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 201 SSTFDEPASRHVQVAEMVIEKAKRLTEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 260
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 261 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 320
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+++KRV+PA+++ +SGTR+EELL+ DKL+K +VLR++L +
Sbjct: 321 ISDKRVFPAVDIQRSGTRKEELLVPADKLKKTFVLRRILSQM 362
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 91/128 (71%), Gaps = 27/128 (21%)
Query: 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA- 548
A P++GK++ LQ+IA++ITTNH E +IV+LIDERPEEVT+MQR+V GEV++STFDEPA
Sbjct: 150 APPRTGKTVFLQNIANSITTNHPECYLIVLLIDERPEEVTDMQRTVNGEVVSSTFDEPAS 209
Query: 549 --------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRP 582
L + +L RAYNTV+P+SGKVLTGGVD+NALQRP
Sbjct: 210 RHVQVAEMVIEKAKRLTEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP 269
Query: 583 KRFFGAAR 590
KRFFGAAR
Sbjct: 270 KRFFGAAR 277
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 73/100 (73%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
+RKQEL+FAI K+ + I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRR
Sbjct: 1 MRKQELLFAILKRLAEQDIEIIGEGVVEVLQDGFGFLRSPDANYLPGPDDIYVSPSQIRR 60
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
F+L TG +G+IR PK GERYFALLK+ K+N P+ +
Sbjct: 61 FSLRTGDTVEGQIRSPKEGERYFALLKVNKINFEDPEKAR 100
>gi|158426339|ref|YP_001527631.1| transcription termination factor Rho [Azorhizobium caulinodans ORS
571]
gi|158333228|dbj|BAF90713.1| transcription termination factor protein [Azorhizobium caulinodans
ORS 571]
Length = 423
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/341 (69%), Positives = 292/341 (85%), Gaps = 2/341 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD VEG+IR PK GE
Sbjct: 52 IIGTGVVEVLQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE--RNIESKENITGRIIDLIA 125
RYFALLK+ +N E PE +K++ FDNLTPL+P + L LE +K++ + RIID ++
Sbjct: 112 RYFALLKVNTINFEDPEKTKHKINFDNLTPLYPDERLKLEVEDTTGTKKDFSARIIDTVS 171
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
PIGKGQRGL+VA P++GK+++LQ+IA +IT NH E +IV+LIDERPEEVT+MQRSV+GE
Sbjct: 172 PIGKGQRGLIVAPPRTGKTVLLQNIAKSITANHPECFLIVLLIDERPEEVTDMQRSVKGE 231
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VI+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLT
Sbjct: 232 VISSTFDEPASRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLT 291
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN EV L+
Sbjct: 292 GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEVILD 351
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
R++++KRV+PAI++ +SGTR+EELL+ D L+K++VLR++L
Sbjct: 352 RKVSDKRVFPAIDITRSGTRKEELLVPADVLKKMYVLRRIL 392
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IA +IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 182 VAPPRTGKTVLLQNIAKSITANHPECFLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPA 241
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 242 SRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 301
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 302 PKRFFGAAR 310
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 73/110 (66%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
+V + LRKQELMFAI K+ I G G +EVL DGFGFLRS +NY+ DDIY+
Sbjct: 25 QVENASTLRKQELMFAILKQLAATETDIIGTGVVEVLQDGFGFLRSPDANYLPGPDDIYV 84
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
SPSQIRRF L TG +G+IR PK GERYFALLK+ +N P+ K I
Sbjct: 85 SPSQIRRFGLRTGDTVEGQIRSPKEGERYFALLKVNTINFEDPEKTKHKI 134
>gi|240851404|ref|YP_002972807.1| transcription termination factor Rho [Bartonella grahamii as4aup]
gi|240268527|gb|ACS52115.1| transcription termination factor Rho [Bartonella grahamii as4aup]
Length = 421
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/345 (67%), Positives = 296/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTIEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N EKPE + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEKPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+EELL++ L KI+VLR++L S+ +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVERQDLHKIFVLRRILASMNVT 396
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPAQIQSFSLKTGDTIEGPIRSPKEGERYFALLKINTINFEKPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|354594859|ref|ZP_09012896.1| transcription termination factor Rho [Commensalibacter intestini
A911]
gi|353671698|gb|EHD13400.1| transcription termination factor Rho [Commensalibacter intestini
A911]
Length = 423
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/344 (67%), Positives = 292/344 (84%), Gaps = 5/344 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G+LE+LPDGFG+LRS SNY+ DDIY+SP+Q+RRF+L TGD + GEIR PK GE
Sbjct: 49 IYGEGTLEILPDGFGYLRSPESNYLPGPDDIYVSPAQLRRFSLRTGDTISGEIRAPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE-----RNIESKENITGRIID 122
RYF+LLK+ +N + PE ++R FD+LTPL P + L +E ++ T R+ID
Sbjct: 109 RYFSLLKVDSINYQDPEAVRHRINFDDLTPLFPNERLKMEIPSLMEGKNPNKDFTHRVID 168
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+ PIGKGQR L+VA P++GK+++LQ+IA AI+TNH EA++IV+LIDERPEEVT+M RSV
Sbjct: 169 LVTPIGKGQRALVVAPPRTGKTVMLQNIATAISTNHPEAVLIVLLIDERPEEVTDMIRSV 228
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV++STFDEPA RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+SGK
Sbjct: 229 KGEVVSSTFDEPANRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGK 288
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+
Sbjct: 289 VLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNAEL 348
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R+LA+KR +PAI++ +SGTR+EELL+ L KIWVLR++L
Sbjct: 349 ILDRKLADKRTFPAIDITRSGTRKEELLVDRASLSKIWVLRRIL 392
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 153/290 (52%), Gaps = 88/290 (30%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL-----------------PDGF- 430
LE+ + LRKQ++MFAI KK + + I+G+G+LE+L PD
Sbjct: 21 LEIENASSLRKQDMMFAILKKFAENNQAIYGEGTLEILPDGFGYLRSPESNYLPGPDDIY 80
Query: 431 ------------------GFLRS--QGSNYMA--SSDDI-YLSPSQIR-RFNLHT-GILW 465
G +R+ +G Y + D I Y P +R R N L+
Sbjct: 81 VSPAQLRRFSLRTGDTISGEIRAPKEGERYFSLLKVDSINYQDPEAVRHRINFDDLTPLF 140
Query: 466 KGE---IRVP-----KNGERYFALLKIKKVN----------VASPKSGKSIILQHIAHAI 507
E + +P KN + F I V VA P++GK+++LQ+IA AI
Sbjct: 141 PNERLKMEIPSLMEGKNPNKDFTHRVIDLVTPIGKGQRALVVAPPRTGKTVMLQNIATAI 200
Query: 508 TTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------- 548
+TNH EA++IV+LIDERPEEVT+M RSV+GEV++STFDEPA
Sbjct: 201 STNHPEAVLIVLLIDERPEEVTDMIRSVKGEVVSSTFDEPANRHVQVAEMVLEKAKRLVE 260
Query: 549 --------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 261 HKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 310
>gi|148559193|ref|YP_001259869.1| transcription termination factor Rho [Brucella ovis ATCC 25840]
gi|148370450|gb|ABQ60429.1| transcription termination factor Rho [Brucella ovis ATCC 25840]
Length = 418
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 294/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE ++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 109 RYFALLKVNTINFEDPEKIGHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 169 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 394
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 158/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 15 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 70
Query: 439 NYMASSDDIYLS---------------------PSQIRRF-------------------- 457
NY+ DDIY+S P + R+
Sbjct: 71 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIGHK 130
Query: 458 -------NLHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
L+ +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 131 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 191 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 251 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|334139604|ref|YP_004532798.1| transcription termination factor Rho [Novosphingobium sp. PP1Y]
gi|333937622|emb|CCA90980.1| transcription termination factor Rho [Novosphingobium sp. PP1Y]
Length = 418
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/345 (66%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I G G++EVL DGFGFLRS +NY+A DDIY+SP+Q+R++ L TGD VEGEIR PK
Sbjct: 46 GEEIIGQGTIEVLTDGFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFA+ K+ VN + P++ ++R FDNLTPL+P + L L+ + ++ + R+IDLI
Sbjct: 106 DGERYFAITKLMSVNYDDPDVVRHRVNFDNLTPLYPDERLKLDSLDPTVKDKSARVIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ+IA AIT NH E ++V+L+DERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ D+L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVPKDQLSKMWVLRRILMQM 390
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 161/286 (56%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ V +R+Q+LMF I K+ + GE I G G++EVL DGFGFLRS +NY+A DDI
Sbjct: 20 EMGVEGASTMRRQDLMFGILKEVAEDGEEIIGQGTIEVLTDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP--------------- 492
Y+SP+Q+R++ L TG +GEIR PK+GERYFA+ K+ VN P
Sbjct: 80 YVSPNQVRKWGLRTGDTVEGEIRAPKDGERYFAITKLMSVNYDDPDVVRHRVNFDNLTPL 139
Query: 493 -----------------KSGKSI------------------------ILQHIAHAITTNH 511
KS + I +LQ+IA AIT NH
Sbjct: 140 YPDERLKLDSLDPTVKDKSARVIDLISPQGKGQRALIVAPPRTGKTVLLQNIAKAITDNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E ++V+L+DERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 PEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|307943440|ref|ZP_07658784.1| transcription termination factor Rho [Roseibium sp. TrichSKD4]
gi|307773070|gb|EFO32287.1| transcription termination factor Rho [Roseibium sp. TrichSKD4]
Length = 418
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 227/342 (66%), Positives = 295/342 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG+IR PK+GE
Sbjct: 49 IIGEGVVEVLQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E P+ ++++ FDNLTPL+P + +E ++++++ R+ID++AP+
Sbjct: 109 RYFALLKVNTINFEDPDKARHKVHFDNLTPLYPDERFKMEIEDPTRKDMSARVIDMVAPL 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+ A P++GK++ LQ++A +ITTNH E +IV+LIDERPEEVT+MQR+V GEV+
Sbjct: 169 GKGQRGLITAPPRTGKTVFLQNVAQSITTNHPECYLIVLLIDERPEEVTDMQRTVNGEVV 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 229 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 289 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+++KRVYPAI++ +SGTR+EELL+ +KL+K +VLR++L +
Sbjct: 349 ISDKRVYPAIDIQRSGTRKEELLVDPEKLKKTFVLRRILNPM 390
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 152/286 (53%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 20 ELEVENASTMRKQELMFAILKNLAAQDVEIIGEGVVEVLQDGFGFLRSPDANYLPGPDDI 79
Query: 448 YLSPS---------------QIR-------------------------RFNLHTGIL--- 464
Y+SPS QIR R +H L
Sbjct: 80 YVSPSQIRRFSLRTGDTVEGQIRSPKDGERYFALLKVNTINFEDPDKARHKVHFDNLTPL 139
Query: 465 -----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+K EI P + ++ + + + A P++GK++ LQ++A +ITTNH
Sbjct: 140 YPDERFKMEIEDPTRKDMSARVIDMVAPLGKGQRGLITAPPRTGKTVFLQNVAQSITTNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQR+V GEV++STFDEPA
Sbjct: 200 PECYLIVLLIDERPEEVTDMQRTVNGEVVSSTFDEPAARHVQVAEMVIEKAKRLVEHGRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|163844082|ref|YP_001628486.1| transcription termination factor Rho [Brucella suis ATCC 23445]
gi|163674805|gb|ABY38916.1| transcription termination factor Rho [Brucella suis ATCC 23445]
Length = 421
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/346 (67%), Positives = 294/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE ++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKICHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 397
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 158/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLS---------------------PSQIRRF-------------------- 457
NY+ DDIY+S P + R+
Sbjct: 74 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKICHK 133
Query: 458 -------NLHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
L+ +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|328541698|ref|YP_004301807.1| transcription termination factor Rho protein [Polymorphum gilvum
SL003B-26A1]
gi|326411450|gb|ADZ68513.1| Probable transcription termination factor Rho protein [Polymorphum
gilvum SL003B-26A1]
Length = 421
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/339 (67%), Positives = 292/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG+IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE ++++ FDNLTPL+P + +E + ++++ RIIDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKTRHKVHFDNLTPLYPDERFKMEIEDPTSKDLSSRIIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+ A P++GK++ LQ+IA +ITTNH E +IV+LIDERPEEVT+MQR+V+GEV+
Sbjct: 172 GKGQRALITAPPRTGKTVFLQNIAKSITTNHPECYLIVLLIDERPEEVTDMQRTVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KRV+PAI++ +SGTR+EELL+ DKL+K +VLR++L
Sbjct: 352 ISDKRVFPAIDIQRSGTRKEELLVAPDKLKKTFVLRRIL 390
Score = 198 bits (503), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 155/286 (54%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELEVENASTMRKQELMFAILKRLAAQDVDIIGEGVVEVLQDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPS---------------QIR-------------------------RFNLHTGIL--- 464
Y+SPS QIR R +H L
Sbjct: 83 YVSPSQIRRFSLRTGDTVEGQIRSPKEGERYFALLKVNTINFEDPEKTRHKVHFDNLTPL 142
Query: 465 -----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
+K EI P + + ++ + + + A P++GK++ LQ+IA +ITTNH
Sbjct: 143 YPDERFKMEIEDPTSKDLSSRIIDLVAPLGKGQRALITAPPRTGKTVFLQNIAKSITTNH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQR+V+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRTVKGEVVSSTFDEPAARHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|163757467|ref|ZP_02164556.1| transcription termination factor Rho [Hoeflea phototrophica DFL-43]
gi|162284969|gb|EDQ35251.1| transcription termination factor Rho [Hoeflea phototrophica DFL-43]
Length = 421
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGF+RS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFMRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++I+ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMEIDNPTSKDISSRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH + +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPDCYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DVIILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVIILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++P++++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPSMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 155/302 (51%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL----- 426
LK+ +LA +++++E SV +RKQELMFAI K+ I G+G +EVL
Sbjct: 9 LKNKTPTDLLAFAESVEVENASV--MRKQELMFAILKQLAAQDVEIIGEGVVEVLQDGFG 66
Query: 427 ------------PDGFGFLRSQGSNYMASSDDI------------------------YLS 450
PD SQ + + D +
Sbjct: 67 FMRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFED 126
Query: 451 PSQIRR---FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSG 495
P +IR F+ L+ +K EI P + + ++ + + + VA P++G
Sbjct: 127 PEKIRHKVHFDNLTPLYPNERFKMEIDNPTSKDISSRVIDLVAPLGKGQRGLIVAPPRTG 186
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IAH+IT NH + +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 187 KTVLLQNIAHSITANHPDCYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVA 246
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 247 EMVIEKAKRLVEHGRDVIILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 306
Query: 589 AR 590
AR
Sbjct: 307 AR 308
>gi|296284836|ref|ZP_06862834.1| transcription termination factor Rho [Citromicrobium bathyomarinum
JL354]
Length = 421
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/344 (67%), Positives = 295/344 (85%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
E+I G G++EV+ DGFGFLRS +NY+A DDIY+SP+QIR++ L TGD VEGEIR P+
Sbjct: 50 EQIMGIGTIEVMQDGFGFLRSPEANYLAGPDDIYVSPNQIRKWGLRTGDTVEGEIRAPRE 109
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
GERYFAL K+ VN + PE + RT FDNLTPL+P++ L L+ + ++ + R+ID+I+
Sbjct: 110 GERYFALTKLTSVNYDDPEAVRMRTNFDNLTPLYPEQKLNLDTLDPTVKDKSARVIDIIS 169
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
P GKGQR L+VA P++GK+++LQ+IA AIT NH E ++V+L+DERPEEVT+MQRSV GE
Sbjct: 170 PQGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVNGE 229
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VI+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRL RAYNTV+P+SGKVLT
Sbjct: 230 VISSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLT 289
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+
Sbjct: 290 GGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLD 349
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R++A+KR++PA+++ KSGTR+EELL++ DKL K+WVLR++L +
Sbjct: 350 RKVADKRIFPALDVGKSGTRKEELLVEKDKLSKMWVLRRILMQM 393
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 168/309 (54%), Gaps = 91/309 (29%)
Query: 369 KNLLKDACMPLV-LAETQTIDLEVNSVKRLRKQELMFAIFKK---KTKIGERIFGDGSLE 424
K+L K A LV +AE +L V + +R+Q+LMF I ++ E+I G G++E
Sbjct: 4 KDLKKKAPADLVSMAE----ELGVEAAGTMRRQDLMFCILRELAEDEDYDEQIMGIGTIE 59
Query: 425 VLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEI--------------- 469
V+ DGFGFLRS +NY+A DDIY+SP+QIR++ L TG +GEI
Sbjct: 60 VMQDGFGFLRSPEANYLAGPDDIYVSPNQIRKWGLRTGDTVEGEIRAPREGERYFALTKL 119
Query: 470 -----------RVPKNGERYFALLKIKKVN------------------------------ 488
R+ N + L +K+N
Sbjct: 120 TSVNYDDPEAVRMRTNFDNLTPLYPEQKLNLDTLDPTVKDKSARVIDIISPQGKGQRALI 179
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IA AIT NH E ++V+L+DERPEEVT+MQRSV GEVI+STFDEPA
Sbjct: 180 VAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVNGEVISSTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 240 QRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
>gi|306842821|ref|ZP_07475461.1| transcription termination factor Rho [Brucella sp. BO2]
gi|306287015|gb|EFM58526.1| transcription termination factor Rho [Brucella sp. BO2]
Length = 421
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 294/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+I H+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIVHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 397
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 160/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 74 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
I H+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 194 IVHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|300024780|ref|YP_003757391.1| transcription termination factor Rho [Hyphomicrobium denitrificans
ATCC 51888]
gi|299526601|gb|ADJ25070.1| transcription termination factor Rho [Hyphomicrobium denitrificans
ATCC 51888]
Length = 421
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/339 (67%), Positives = 294/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD VEG+IR PK+GE
Sbjct: 52 ITATGVVEVLQDGFGFLRSPEANYLPGPDDIYVSPSQIRRFALRTGDTVEGQIRSPKDGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +K+++ FDNLTPL+P K L LE + ++ + R+ID+++P+
Sbjct: 112 RYFALLKVSNINFEDPEKAKHKSHFDNLTPLYPTKWLKLEIEDPTIKDFSSRVIDIVSPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQR+V+GEVI
Sbjct: 172 GKGQRALIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRNVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQV+EMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPPSRHVQVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KRV+PAI++ +SGTR+E+LL+ D+L+K++VLR++L
Sbjct: 352 VSDKRVFPAIDVARSGTRKEDLLVPRDQLKKVYVLRRIL 390
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQR+V+GEVI+STFDEP
Sbjct: 180 VAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRNVKGEVISSTFDEPP 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVDSNALQR
Sbjct: 240 SRHVQVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDSNALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 70/106 (66%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + LRKQELMFA K+ I G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTLRKQELMFATLKQLATQETEITATGVVEVLQDGFGFLRSPEANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
PSQIRRF L TG +G+IR PK+GERYFALLK+ +N P+ K
Sbjct: 86 PSQIRRFALRTGDTVEGQIRSPKDGERYFALLKVSNINFEDPEKAK 131
>gi|317152591|ref|YP_004120639.1| transcription termination factor Rho [Desulfovibrio aespoeensis
Aspo-2]
gi|316942842|gb|ADU61893.1| transcription termination factor Rho [Desulfovibrio aespoeensis
Aspo-2]
Length = 439
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/344 (68%), Positives = 293/344 (85%), Gaps = 3/344 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
+IFGDG LE+LPDGFGFLRS +YM DDIY+SPSQIRRF L GD V G+IR PK G
Sbjct: 72 QIFGDGVLEILPDGFGFLRSPMYSYMPGPDDIYVSPSQIRRFGLRKGDVVSGQIRPPKEG 131
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ERYFALL++ ++ E PE SKN LFDNLTPL+P+ +L +E +N RIIDL+AP
Sbjct: 132 ERYFALLRVSEIGFEPPEHSKNLVLFDNLTPLYPESMLTME---NGDKNYASRIIDLLAP 188
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQRG+LVA P++GK+I+LQ IA++I NH + +IV+LIDERPEEVT+MQR+VR EV
Sbjct: 189 IGKGQRGILVAPPRTGKTIMLQTIANSINANHPDVDLIVLLIDERPEEVTDMQRTVRAEV 248
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYN V P+SG+VL+G
Sbjct: 249 VSSTFDEPPTRHVQVAEMVIEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSG 308
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
G+D+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGNME++L+R
Sbjct: 309 GIDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDR 368
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LAEKRV+PAI++N+SGTR+EELL+++D L ++W+LRKLL ++
Sbjct: 369 HLAEKRVFPAIDINRSGTRKEELLLEEDVLNRVWILRKLLAPMS 412
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/285 (43%), Positives = 159/285 (55%), Gaps = 80/285 (28%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
+ LEV + LRKQEL+F + ++ +IFGDG LE+LPDGFGFLRS +YM D
Sbjct: 42 AVQLEVENPSSLRKQELIFELLQQCASQNGQIFGDGVLEILPDGFGFLRSPMYSYMPGPD 101
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN----------------- 488
DIY+SPSQIRRF L G + G+IR PK GERYFALL++ ++
Sbjct: 102 DIYVSPSQIRRFGLRKGDVVSGQIRPPKEGERYFALLRVSEIGFEPPEHSKNLVLFDNLT 161
Query: 489 ------------------------------------VASPKSGKSIILQHIAHAITTNHS 512
VA P++GK+I+LQ IA++I NH
Sbjct: 162 PLYPESMLTMENGDKNYASRIIDLLAPIGKGQRGILVAPPRTGKTIMLQTIANSINANHP 221
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ +IV+LIDERPEEVT+MQR+VR EV++STFDEP
Sbjct: 222 DVDLIVLLIDERPEEVTDMQRTVRAEVVSSTFDEPPTRHVQVAEMVIEKAKRLVERKRDV 281
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYN V P+SG+VL+GG+D+NALQRPKRFFGAAR
Sbjct: 282 VILLDSITRLGRAYNAVTPSSGRVLSGGIDANALQRPKRFFGAAR 326
>gi|56552892|ref|YP_163731.1| transcription termination factor Rho [Zymomonas mobilis subsp.
mobilis ZM4]
gi|260753415|ref|YP_003226308.1| transcription termination factor Rho [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|384412116|ref|YP_005621481.1| transcription termination factor Rho [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|397677060|ref|YP_006518598.1| transcription termination factor Rho [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|56544466|gb|AAV90620.1| transcription termination factor Rho [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552778|gb|ACV75724.1| transcription termination factor Rho [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932490|gb|AEH63030.1| transcription termination factor Rho [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|395397749|gb|AFN57076.1| transcription termination factor Rho [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 418
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 295/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G++I G G++EVLPDGFGFLRS +NY+A DDIY+SP+Q+R+F L TGD VEGEIR PK
Sbjct: 46 GDQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRGPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ERYFAL K+ VN + P+ ++R FDNLTPL+P + L L+ + + ++ + R+ID++
Sbjct: 106 DSERYFALTKLISVNFDNPDNVRHRVNFDNLTPLYPSEKLNLDISDPTNKDKSARVIDIV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQR L+VA P+ GK+++LQ+IA AI+ NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 166 APQGKGQRSLIVAPPRVGKTVLLQNIARAISENHPEVFLIVLLIDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDS+TRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKKDVVILLDSVTRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN EV L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEVVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ D L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPAMDVGKSGTRKEELLVDKDTLSKMWVLRRILMQM 390
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 161/286 (56%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + LRKQ+L+FAI K + + G++I G G++EVLPDGFGFLRS +NY+A DDI
Sbjct: 20 ELGIEGASTLRKQDLLFAILKVQAERGDQIMGLGTIEVLPDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGE--------------------------------------- 468
Y+SP+Q+R+F L TG +GE
Sbjct: 80 YVSPNQVRKFGLRTGDTVEGEIRGPKDSERYFALTKLISVNFDNPDNVRHRVNFDNLTPL 139
Query: 469 ---------IRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNH 511
I P N ++ ++ I + + VA P+ GK+++LQ+IA AI+ NH
Sbjct: 140 YPSEKLNLDISDPTNKDKSARVIDIVAPQGKGQRSLIVAPPRVGKTVLLQNIARAISENH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 PEVFLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKKD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSVTRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|296533448|ref|ZP_06896031.1| transcription termination factor Rho [Roseomonas cervicalis ATCC
49957]
gi|296266228|gb|EFH12270.1| transcription termination factor Rho [Roseomonas cervicalis ATCC
49957]
Length = 424
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/345 (68%), Positives = 293/345 (84%), Gaps = 6/345 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG+LE+LPDGFGFLRS SNY+ DDIY+SP+Q+RRF L TGD VEG+IR PK+GE
Sbjct: 49 IHGDGTLEILPDGFGFLRSPQSNYLPGPDDIYVSPAQVRRFGLRTGDTVEGQIRAPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERN-IES-----KENITGRII 121
RYFALLKI VN E PE ++R FDNLTPL+P + L +E + ES +++ T R+I
Sbjct: 109 RYFALLKINTVNFEPPEALRHRINFDNLTPLYPTRRLKMENSEFESVAKGMQKDYTPRVI 168
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIG GQR L+VA P++GK+++LQ+IA +I+ NH + ++V+LIDERPEEVT+M R+
Sbjct: 169 DLVAPIGMGQRALVVAPPRTGKTVMLQNIARSISLNHPDVFLLVLLIDERPEEVTDMART 228
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRL RAYN+V+P+SG
Sbjct: 229 VRGEVVASTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLGRAYNSVVPSSG 288
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E
Sbjct: 289 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSE 348
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+ L+R+L++KRV+PAI++ KSGTR+EE+LI L K+WVLR++L
Sbjct: 349 LILDRKLSDKRVFPAIDITKSGTRKEEVLIDRATLTKMWVLRRIL 393
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IA +I+ NH + ++V+LIDERPEEVT+M R+VRGEV+ASTFDEPA
Sbjct: 183 VAPPRTGKTVMLQNIARSISLNHPDVFLLVLLIDERPEEVTDMARTVRGEVVASTFDEPA 242
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN+V+P+SGKVLTGGVD+NALQR
Sbjct: 243 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLGRAYNSVVPSSGKVLTGGVDANALQR 302
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 303 PKRFFGAAR 311
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 4/116 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ L++ + LRKQ++MFAI K+ + + I GDG+LE+LPDGFGFLRS S
Sbjct: 15 LAFAES----LQIENASTLRKQDMMFAILKQLAENEQAIHGDGTLEILPDGFGFLRSPQS 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
NY+ DDIY+SP+Q+RRF L TG +G+IR PK+GERYFALLKI VN P++
Sbjct: 71 NYLPGPDDIYVSPAQVRRFGLRTGDTVEGQIRAPKDGERYFALLKINTVNFEPPEA 126
>gi|294851293|ref|ZP_06791966.1| transcription termination factor Rho [Brucella sp. NVSL 07-0026]
gi|294819882|gb|EFG36881.1| transcription termination factor Rho [Brucella sp. NVSL 07-0026]
Length = 421
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 295/346 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQ+RRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + +E + + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAE+V+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEIVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPAMDILKSGTRKEDLLVPRADLQKIFVLRRILAPMGTTD 397
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 161/295 (54%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 LAFAET----LEVENASAMRKQELMFAILKKLAAQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLSPSQIR----------------------------------------RFN 458
NY+ DDIY+SPSQ+R R
Sbjct: 74 NYLPGPDDIYISPSQLRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRHK 133
Query: 459 LHTGIL--------WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
+H L +K E+ VP + + ++ + + + VA P++GK+++LQ+
Sbjct: 134 VHFDNLTPLYPNERFKMELEVPTSKDLSPRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 194 IAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHVQVAEIVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|398830717|ref|ZP_10588898.1| transcription termination factor Rho [Phyllobacterium sp. YR531]
gi|398213297|gb|EJM99890.1| transcription termination factor Rho [Phyllobacterium sp. YR531]
Length = 421
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 294/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +E+L DGFGF+RS +NY+ DDIY+SPSQIRRF+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEILQDGFGFMRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ VN E PE +++ FDNLTPL+P + +E + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTVNFEDPEKIRHKIHFDNLTPLYPNERFKMELENPTTKDLSARVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPASRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++P++++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 352 VADKRIFPSMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTD 397
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 150/301 (49%), Gaps = 87/301 (28%)
Query: 373 KDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL------ 426
K A L AET LEV + +RKQELMFAI KK I G+G +E+L
Sbjct: 12 KTAVDLLAFAET----LEVENASVMRKQELMFAILKKLASQEVEIIGEGVVEILQDGFGF 67
Query: 427 -----------PDGFGFLRSQGSNYMASSDDI------------------------YLSP 451
PD SQ + + D + P
Sbjct: 68 MRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTVNFEDP 127
Query: 452 SQIRR---FN----LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGK 496
+IR F+ L+ +K E+ P + ++ + + + VA P++GK
Sbjct: 128 EKIRHKIHFDNLTPLYPNERFKMELENPTTKDLSARVIDLVAPLGKGQRGLIVAPPRTGK 187
Query: 497 SIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------- 548
+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 188 TVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPASRHVQVAE 247
Query: 549 -------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAA 589
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAA
Sbjct: 248 MVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAA 307
Query: 590 R 590
R
Sbjct: 308 R 308
>gi|341613842|ref|ZP_08700711.1| transcription termination factor Rho [Citromicrobium sp. JLT1363]
Length = 421
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/344 (67%), Positives = 295/344 (85%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
E+I G G++EVL DGFGFLRS +NY+A DDIY+SP+QIR++ L TGD VEGEIR P+
Sbjct: 50 EQIMGIGTIEVLQDGFGFLRSPEANYLAGPDDIYVSPNQIRKWALRTGDTVEGEIRAPRE 109
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
GERYFAL K+ VN + PE + RT FDNLTPL+P++ L L+ + ++ + R+ID+I+
Sbjct: 110 GERYFALTKLTSVNFDDPEAVRMRTNFDNLTPLYPEEKLSLDTLDPTVKDKSARVIDIIS 169
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
P GKGQR L+VA P++GK+++LQ+IA AIT NH E ++V+L+DERPEEVT+MQRSV GE
Sbjct: 170 PQGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVNGE 229
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVLT
Sbjct: 230 VISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLT 289
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+
Sbjct: 290 GGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLD 349
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R++A+KR++PA+++ KSGTR+EELL++ DKL K+WVLR++L +
Sbjct: 350 RKVADKRIFPALDVGKSGTRKEELLVEKDKLSKMWVLRRILMQM 393
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 158/309 (51%), Gaps = 91/309 (29%)
Query: 369 KNLLKDACMPLV-LAETQTIDLEVNSVKRLRKQELMFAIFKK---KTKIGERIFGDGSLE 424
K+L K A LV +AE +L V + +R+Q+LMF I ++ + E+I G G++E
Sbjct: 4 KDLKKKAPADLVSMAE----ELGVEAAGTMRRQDLMFCILRELAEDEEYDEQIMGIGTIE 59
Query: 425 VLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKI 484
VL DGFGFLRS +NY+A DDIY+SP+QIR++ L TG +GEIR P+ GERYFAL K+
Sbjct: 60 VLQDGFGFLRSPEANYLAGPDDIYVSPNQIRKWALRTGDTVEGEIRAPREGERYFALTKL 119
Query: 485 KKVNVASPKSGK---------------SIILQHIAHAITTNHSEAIMIV----------- 518
VN P++ + + L + + + I I+
Sbjct: 120 TSVNFDDPEAVRMRTNFDNLTPLYPEEKLSLDTLDPTVKDKSARVIDIISPQGKGQRALI 179
Query: 519 -----------------MLIDERPE-------------EVTEMQRSVRGEVIASTFDEPA 548
+ D PE EVT+MQRSV GEVI+STFDEPA
Sbjct: 180 VAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVNGEVISSTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 240 QRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
>gi|218885595|ref|YP_002434916.1| transcription termination factor Rho [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756549|gb|ACL07448.1| transcription termination factor Rho [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 416
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/344 (66%), Positives = 292/344 (84%), Gaps = 4/344 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+LPDGFGFLRS +YM DDIY+SPSQIRRFNL GD V G+IR PK GE
Sbjct: 49 IYGDGVLEILPDGFGFLRSPLCSYMPGPDDIYVSPSQIRRFNLRKGDVVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ ++ E PE +KN LFDNLTP++P + ++E +N + R+ID++AP+
Sbjct: 109 RYFALLKVTEIGFEPPENAKNLVLFDNLTPIYPDRQFIME---NGDKNYSSRVIDMMAPV 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-GEV 186
G+GQRGL+VA P++GK+I+LQ IA++I NH +A +IV+LIDERPEEVT+M+R+V+ EV
Sbjct: 166 GRGQRGLIVAPPRTGKTILLQTIANSINANHPDAYLIVLLIDERPEEVTDMERTVKNAEV 225
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEP RHVQV EMVLEKAKRLVE K+DV+ILLDSITRL RAYN V P+SG+VL+G
Sbjct: 226 VSSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSG 285
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
G+D+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGNME++LER
Sbjct: 286 GLDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLER 345
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LAEKRV+PAI++N++GTR+E+LL+ D+ L ++W+LRK+L ++
Sbjct: 346 HLAEKRVFPAIDINRTGTRKEDLLLSDEVLNRVWILRKILAPMS 389
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/281 (43%), Positives = 156/281 (55%), Gaps = 81/281 (28%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V +RKQEL+FA+ + I+GDG LE+LPDGFGFLRS +YM DDIY+S
Sbjct: 23 VEGASGMRKQELIFALLQACASQNGAIYGDGVLEILPDGFGFLRSPLCSYMPGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFNL G + G+IR PK GERYFALLK+ ++
Sbjct: 83 PSQIRRFNLRKGDVVSGQIRPPKEGERYFALLKVTEIGFEPPENAKNLVLFDNLTPIYPD 142
Query: 489 -------------------------------VASPKSGKSIILQHIAHAITTNHSEAIMI 517
VA P++GK+I+LQ IA++I NH +A +I
Sbjct: 143 RQFIMENGDKNYSSRVIDMMAPVGRGQRGLIVAPPRTGKTILLQTIANSINANHPDAYLI 202
Query: 518 VMLIDERPEEVTEMQRSVR-GEVIASTFDEPA---------------------------L 549
V+LIDERPEEVT+M+R+V+ EV++STFDEP L
Sbjct: 203 VLLIDERPEEVTDMERTVKNAEVVSSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILL 262
Query: 550 SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +L RAYN V P+SG+VL+GG+D+NALQRPKRFFGAAR
Sbjct: 263 DSITRLGRAYNAVTPSSGRVLSGGLDANALQRPKRFFGAAR 303
>gi|217978671|ref|YP_002362818.1| transcription termination factor Rho [Methylocella silvestris BL2]
gi|217504047|gb|ACK51456.1| transcription termination factor Rho [Methylocella silvestris BL2]
Length = 422
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/339 (68%), Positives = 292/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+A DDIY+SPSQIRRF L TGD VEG IR PK GE
Sbjct: 52 IIGEGVIEVLQDGFGFLRSPEANYLAGPDDIYVSPSQIRRFGLRTGDTVEGLIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL+P + L LE ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTINFEDPEKVRHKVHFDNLTPLYPDQRLKLEVEDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IA ++T NH E +IV+LIDERPEEVT+MQRSV GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLLQNIAQSVTANHPECYLIVLLIDERPEEVTDMQRSVHGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KRV+P+I++ +SGTR+EELL+ D L+K++VLR++L
Sbjct: 352 VADKRVFPSIDITRSGTRKEELLVPPDILKKMYVLRRIL 390
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 142/284 (50%), Gaps = 83/284 (29%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGF------------------- 430
EV + +RKQELMFAI K+ I G+G +EVL DGF
Sbjct: 25 EVENASIMRKQELMFAILKQLASREIEIIGEGVIEVLQDGFGFLRSPEANYLAGPDDIYV 84
Query: 431 -----------------GFLRS--QGSNYMA--SSDDIYLSPSQIRRFNLHTGIL----- 464
G +RS +G Y A + I + R +H L
Sbjct: 85 SPSQIRRFGLRTGDTVEGLIRSPKEGERYFALLKVNTINFEDPEKVRHKVHFDNLTPLYP 144
Query: 465 ---WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
K E+ P + ++ I + + VA P++GK+++LQ+IA ++T NH E
Sbjct: 145 DQRLKLEVEDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLLQNIAQSVTANHPE 204
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVT+MQRSV GEV++STFDEPA
Sbjct: 205 CYLIVLLIDERPEEVTDMQRSVHGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVV 264
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 265 ILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|414164588|ref|ZP_11420835.1| transcription termination factor Rho [Afipia felis ATCC 53690]
gi|410882368|gb|EKS30208.1| transcription termination factor Rho [Afipia felis ATCC 53690]
Length = 421
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 292/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +E+L DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG+IR PK GE
Sbjct: 52 IIGEGVVEILSDGFGFLRSSDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFKLELDDPTRKDLSPRVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAHAITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHAITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++ +SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDIARSGTRKEELITDPQTLKKMYVLRRIL 390
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 165/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFAI K I G+G +E+L DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFAILKLLASQETDIIGEGVVEILSDGFGFLRSSDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G+IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGQIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAHAITTNH
Sbjct: 143 FPDERFKLELDDPTRKDLSPRVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHAITTNH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|395778894|ref|ZP_10459405.1| transcription termination factor Rho [Bartonella elizabethae
Re6043vi]
gi|423714742|ref|ZP_17688966.1| transcription termination factor Rho [Bartonella elizabethae F9251]
gi|395417069|gb|EJF83421.1| transcription termination factor Rho [Bartonella elizabethae
Re6043vi]
gi|395430961|gb|EJF96989.1| transcription termination factor Rho [Bartonella elizabethae F9251]
Length = 421
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/345 (67%), Positives = 294/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSPSQI+ F+L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPSQIQSFSLKTGDTIEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N EKPE + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEKPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVT 396
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSPSQI+ R+ +H L
Sbjct: 84 LSPSQIQSFSLKTGDTIEGPIRSPKEGERYFALLKINTINFEKPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|347731175|ref|ZP_08864277.1| transcription termination factor Rho [Desulfovibrio sp. A2]
gi|347520062|gb|EGY27205.1| transcription termination factor Rho [Desulfovibrio sp. A2]
Length = 416
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/344 (66%), Positives = 292/344 (84%), Gaps = 4/344 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+LPDGFGFLRS +YM DDIY+SPSQIRRFNL GD V G+IR PK GE
Sbjct: 49 IYGDGVLEILPDGFGFLRSPLCSYMPGPDDIYVSPSQIRRFNLRKGDVVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ ++ E PE +KN LFDNLTP++P + ++E +N + R+ID++AP+
Sbjct: 109 RYFALLKVTEIGFEPPENAKNLVLFDNLTPIYPDRQFIME---NGDKNYSSRVIDMMAPV 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-GEV 186
G+GQRGL+VA P++GK+I+LQ IA++I NH +A +IV+LIDERPEEVT+M+R+V+ EV
Sbjct: 166 GRGQRGLIVAPPRTGKTILLQTIANSINANHPDAYLIVLLIDERPEEVTDMERTVKNAEV 225
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEP RHVQV EMVLEKAKRLVE K+DV+ILLDSITRL RAYN V P+SG+VL+G
Sbjct: 226 VSSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSG 285
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
G+D+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGNME++LER
Sbjct: 286 GLDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLER 345
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LAEKRV+PAI++N++GTR+E+LL+ D+ L ++W+LRK+L ++
Sbjct: 346 HLAEKRVFPAIDINRTGTRKEDLLLSDEVLNRVWILRKILAPMS 389
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/281 (43%), Positives = 156/281 (55%), Gaps = 81/281 (28%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V +RKQEL+FA+ + I+GDG LE+LPDGFGFLRS +YM DDIY+S
Sbjct: 23 VEGASGMRKQELIFALLQACASQNGAIYGDGVLEILPDGFGFLRSPLCSYMPGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------- 488
PSQIRRFNL G + G+IR PK GERYFALLK+ ++
Sbjct: 83 PSQIRRFNLRKGDVVSGQIRPPKEGERYFALLKVTEIGFEPPENAKNLVLFDNLTPIYPD 142
Query: 489 -------------------------------VASPKSGKSIILQHIAHAITTNHSEAIMI 517
VA P++GK+I+LQ IA++I NH +A +I
Sbjct: 143 RQFIMENGDKNYSSRVIDMMAPVGRGQRGLIVAPPRTGKTILLQTIANSINANHPDAYLI 202
Query: 518 VMLIDERPEEVTEMQRSVR-GEVIASTFDEPA---------------------------L 549
V+LIDERPEEVT+M+R+V+ EV++STFDEP L
Sbjct: 203 VLLIDERPEEVTDMERTVKNAEVVSSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILL 262
Query: 550 SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +L RAYN V P+SG+VL+GG+D+NALQRPKRFFGAAR
Sbjct: 263 DSITRLGRAYNAVTPSSGRVLSGGLDANALQRPKRFFGAAR 303
>gi|162456215|ref|YP_001618582.1| transcription termination factor Rho [Sorangium cellulosum So ce56]
gi|161166797|emb|CAN98102.1| transcription termination factor Rho [Sorangium cellulosum So ce56]
Length = 415
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/344 (65%), Positives = 291/344 (84%), Gaps = 3/344 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
++G+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNL TGD V G IR PK E
Sbjct: 49 VYGEGVLECLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLRTGDSVSGSIRPPKERE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
YFALLK+ K+NGE PE+++++ LFDNLTPL+P++ +E +S + RIID++ PI
Sbjct: 109 AYFALLKVDKINGEPPEVARDKILFDNLTPLYPQQKFNIENGTKS---FSTRIIDMLCPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+V+ P++GK+++LQ IA+AI+ NH + +IV+LIDERPEEVT+MQR+V+GEVI
Sbjct: 166 GKGQRCLIVSPPRAGKTVLLQQIANAISANHPDTTLIVLLIDERPEEVTDMQRTVKGEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV+P SGK+L+GG
Sbjct: 226 SSTFDEPPTRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVVPPSGKILSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL +PKRFFGAARN+EEGGSLTI+ATAL++TGSRMD+VI+EEFKGTGN E+HL+R+
Sbjct: 286 VDSNALHKPKRFFGAARNVEEGGSLTIVATALVDTGSRMDEVIFEEFKGTGNSEIHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
L EKR++P +++NKS TR+EELL+ + LQ++W+LR+LL+ L +
Sbjct: 346 LMEKRIFPCLDINKSATRKEELLLPEWILQRVWLLRQLLHPLNV 389
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQE++FA+ + + ++G+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGAAGLRKQEVIFALLQAHAAQDQPVYGEGVLECLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG G IR PK E YFALLK+ K+N
Sbjct: 81 VSPSQIRRFNLRTGDSVSGSIRPPKEREAYFALLKVDKINGEPPEVARDKILFDNLTPLY 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
V+ P++GK+++LQ IA+AI+ NH +
Sbjct: 141 PQQKFNIENGTKSFSTRIIDMLCPIGKGQRCLIVSPPRAGKTVLLQQIANAISANHPDTT 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQR+V+GEVI+STFDEP
Sbjct: 201 LIVLLIDERPEEVTDMQRTVKGEVISSTFDEPPTRHVQVAEMVIEKAKRLVEHKHDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVVPPSGKILSGGVDSNALHKPKRFFGAAR 302
>gi|42521712|ref|NP_967092.1| transcription termination factor Rho [Bdellovibrio bacteriovorus
HD100]
gi|39574242|emb|CAE77746.1| transcription termination factor Rho [Bdellovibrio bacteriovorus
HD100]
Length = 581
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/349 (65%), Positives = 290/349 (83%), Gaps = 3/349 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K+G+ I+G G LE+LPDG+GFLRS NY+ DDIY+SPSQIRRF L TGD V G +R
Sbjct: 208 KLGQDIYGSGVLEILPDGYGFLRSPDYNYLPGPDDIYVSPSQIRRFGLRTGDTVTGTVRP 267
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ +N E E K++ LFDNLTPL+P + L LE N T R++D
Sbjct: 268 PKDGERYFALLKVDSLNFETTEKGKDKILFDNLTPLYPNERLKLEHN---PGEYTTRVVD 324
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK++++Q IA+AIT NH E +IV+LIDERPEEVT+MQR+V
Sbjct: 325 LMAPLGKGQRALIVAPPRTGKTVLMQQIANAITHNHPEVKLIVLLIDERPEEVTDMQRTV 384
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV++STFDEP RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV+P SGK
Sbjct: 385 KGEVVSSTFDEPPTRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVVPPSGK 444
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+L+GGVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+
Sbjct: 445 ILSGGVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNAEI 504
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
HL+R+L EKR++P +++NKSGTR+E+LL+ L ++W+LRK+L + +
Sbjct: 505 HLDRKLMEKRIFPCMDINKSGTRKEDLLVDKADLNRLWILRKVLAPMNV 553
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 163/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ + LR+Q+++F I K+ K+G+ I+G G LE+LPDG+GFLRS NY+ DDIY
Sbjct: 185 LKIENAAGLRRQDMIFEILKRAAKLGQDIYGSGVLEILPDGYGFLRSPDYNYLPGPDDIY 244
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRF L TG G +R PK+GERYFALLK+ +N
Sbjct: 245 VSPSQIRRFGLRTGDTVTGTVRPPKDGERYFALLKVDSLNFETTEKGKDKILFDNLTPLY 304
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q IA+AIT NH E
Sbjct: 305 PNERLKLEHNPGEYTTRVVDLMAPLGKGQRALIVAPPRTGKTVLMQQIANAITHNHPEVK 364
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQR+V+GEV++STFDEP
Sbjct: 365 LIVLLIDERPEEVTDMQRTVKGEVVSSTFDEPPTRHVQVAEMVIEKAKRLVEHKHDVVIL 424
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 425 LDSITRLARAYNTVVPPSGKILSGGVDSNALHKPKRFFGAAR 466
>gi|340778398|ref|ZP_08698341.1| transcription termination factor Rho [Acetobacter aceti NBRC 14818]
Length = 431
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/355 (65%), Positives = 293/355 (82%), Gaps = 13/355 (3%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G+LE+LPDGFG+LRS +NY+ DDIY+SP Q+RRF L TGD VEG+IR P++GE
Sbjct: 49 IYGEGTLEILPDGFGYLRSPEANYLPGPDDIYISPLQVRRFGLRTGDTVEGQIRAPRDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIE-------------SKE 114
RYF+LLK+ +N E PE ++R FDNLTPL+P++ L +E + ++
Sbjct: 109 RYFSLLKVNTINFEPPEAVRHRINFDNLTPLYPERRLQMEVEGQGEVEPPTTKGKKGTQR 168
Query: 115 NITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
+ T R+IDL+APIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEE
Sbjct: 169 DFTSRVIDLVAPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEE 228
Query: 175 VTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYN 234
VT+M RSVRGEV+ASTFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYN
Sbjct: 229 VTDMARSVRGEVVASTFDEPAQRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYN 288
Query: 235 TVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEF 294
TV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEF
Sbjct: 289 TVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEF 348
Query: 295 KGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
KGTGN E+ L+R+LA+KRV+PAI++ KSGTR+EE+L+ L K+WVLR++L +
Sbjct: 349 KGTGNSELILDRKLADKRVFPAIDITKSGTRKEEMLVDRATLSKMWVLRRILAPM 403
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV+ASTFDEPA
Sbjct: 190 VAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVASTFDEPA 249
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 250 QRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 309
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 310 PKRFFGAAR 318
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 77/107 (71%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + LRKQEL+FAI K + I+G+G+LE+LPDGFG+LRS +NY+ DDI
Sbjct: 20 ELGVENASSLRKQELLFAILKTLADNDQAIYGEGTLEILPDGFGYLRSPEANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+SP Q+RRF L TG +G+IR P++GERYF+LLK+ +N P++
Sbjct: 80 YISPLQVRRFGLRTGDTVEGQIRAPRDGERYFSLLKVNTINFEPPEA 126
>gi|299133197|ref|ZP_07026392.1| transcription termination factor Rho [Afipia sp. 1NLS2]
gi|298593334|gb|EFI53534.1| transcription termination factor Rho [Afipia sp. 1NLS2]
Length = 421
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 292/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +E+L DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG+IR PK GE
Sbjct: 52 IIGEGVVEILSDGFGFLRSSDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFKLELDDPTRKDLSPRVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAHAITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHAITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++ +SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDIARSGTRKEELITDPQLLKKMYVLRRIL 390
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 165/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFAI K I G+G +E+L DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFAILKLLASQETDIIGEGVVEILSDGFGFLRSSDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G+IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGQIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAHAITTNH
Sbjct: 143 FPDERFKLELDDPTRKDLSPRVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHAITTNH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|301060319|ref|ZP_07201182.1| transcription termination factor Rho [delta proteobacterium NaphS2]
gi|300445515|gb|EFK09417.1| transcription termination factor Rho [delta proteobacterium NaphS2]
Length = 415
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/343 (66%), Positives = 295/343 (86%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LE+LPDGFGFLR+ +NY+ DDIY+SPSQIRRFNL GD + G+IR PK E
Sbjct: 49 IYGEGVLEILPDGFGFLRAPDANYLPGPDDIYISPSQIRRFNLRKGDTISGQIRPPKESE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++KVN E PE+S+ + LFDNLTPL+P + + +E +E+ +N + R++DL+ PI
Sbjct: 109 RYFALLKVEKVNHEDPEISREKILFDNLTPLYPDERIKME--VEA-DNFSTRVMDLMTPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IA+++T N IV+LIDERPEEVT+M RSV EVI
Sbjct: 166 GKGQRGLIVAPPRTGKTMLLQNIANSVTANDRSIHKIVLLIDERPEEVTDMARSVEAEVI 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYN+V+P SGK+L+GG
Sbjct: 226 SSTFDEPPQRHVQVAEMVIEKAKRLVEHKRDVLILLDSITRLARAYNSVVPPSGKILSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
+DSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGNME+HL+R+
Sbjct: 286 LDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIHLDRK 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L+++RV+P+I++N+SGTR+EELL++ L +IW+LRKLL LT
Sbjct: 346 LSDRRVFPSIDINRSGTRKEELLLEQADLNRIWILRKLLAPLT 388
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 156/283 (55%), Gaps = 80/283 (28%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+ ++ +RKQEL F++ + + I+G+G LE+LPDGFGFLR+ +NY+ DDI
Sbjct: 20 EFKIEGASGMRKQELTFSLLQAHSAQNGLIYGEGVLEILPDGFGFLRAPDANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------- 488
Y+SPSQIRRFNL G G+IR PK ERYFALLK++KVN
Sbjct: 80 YISPSQIRRFNLRKGDTISGQIRPPKESERYFALLKVEKVNHEDPEISREKILFDNLTPL 139
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK+++LQ+IA+++T N
Sbjct: 140 YPDERIKMEVEADNFSTRVMDLMTPIGKGQRGLIVAPPRTGKTMLLQNIANSVTANDRSI 199
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
IV+LIDERPEEVT+M RSV EVI+STFDEP
Sbjct: 200 HKIVLLIDERPEEVTDMARSVEAEVISSTFDEPPQRHVQVAEMVIEKAKRLVEHKRDVLI 259
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN+V+P SGK+L+GG+DSNAL +PKRFFGAAR
Sbjct: 260 LLDSITRLARAYNSVVPPSGKILSGGLDSNALHKPKRFFGAAR 302
>gi|393768377|ref|ZP_10356917.1| transcription termination factor Rho [Methylobacterium sp. GXF4]
gi|392726203|gb|EIZ83528.1| transcription termination factor Rho [Methylobacterium sp. GXF4]
Length = 456
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/346 (67%), Positives = 291/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G++EVL DGFGFLRS SNY+ DDIY+SP+QIRRF L TGD VEG IR PK+GE
Sbjct: 87 IIGAGTVEVLQDGFGFLRSNDSNYLPGPDDIYISPTQIRRFGLRTGDTVEGPIRGPKDGE 146
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE K++ FDNLTPL P K LE +K++ + RIID++API
Sbjct: 147 RYFALLKVNTINFENPEKIKHKVHFDNLTPLFPTKRFKLELENPTKKDFSPRIIDIVAPI 206
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 207 GKGQRALIVAPPRTGKTVLMQNIAQSITLNHPECYLIVLLIDERPEEVTDMIRSVKGEVI 266
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 267 ASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 326
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 327 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 386
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+++KR++PAI++ +SGTR+EELL+ D L+K +VLR++L + +T
Sbjct: 387 VSDKRIFPAIDITRSGTRKEELLVPPDALKKTYVLRRILNPMGVTD 432
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVIASTFDEPA
Sbjct: 215 VAPPRTGKTVLMQNIAQSITLNHPECYLIVLLIDERPEEVTDMIRSVKGEVIASTFDEPA 274
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 275 TRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 334
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 335 PKRFFGAAR 343
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 79/118 (66%), Gaps = 5/118 (4%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++EV + +RKQELMFAI K+ I G G++EVL DGFGFLRS SNY+ DDI
Sbjct: 58 EVEVENASTMRKQELMFAILKQLAAKEVEIIGAGTVEVLQDGFGFLRSNDSNYLPGPDDI 117
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
Y+SP+QIRRF L TG +G IR PK+GERYFALLK+ +N +P+ ++H H
Sbjct: 118 YISPTQIRRFGLRTGDTVEGPIRGPKDGERYFALLKVNTINFENPEK-----IKHKVH 170
>gi|426402071|ref|YP_007021042.1| transcription termination factor Rho [Bdellovibrio bacteriovorus
str. Tiberius]
gi|425858739|gb|AFX99774.1| transcription termination factor Rho [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 581
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/349 (65%), Positives = 290/349 (83%), Gaps = 3/349 (0%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K+G+ I+G G LE+LPDG+GFLRS NY+ DDIY+SPSQIRRF L TGD V G +R
Sbjct: 208 KLGQDIYGSGVLEILPDGYGFLRSPDYNYLPGPDDIYVSPSQIRRFGLRTGDTVTGTVRP 267
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+GERYFALLK+ +N E E K++ LFDNLTPL+P + L LE S T R++D
Sbjct: 268 PKDGERYFALLKVDSLNFETTENGKDKILFDNLTPLYPNERLKLE---HSPGEYTTRVVD 324
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK++++Q IA+AIT NH E +IV+LIDERPEEVT+MQR+V
Sbjct: 325 LMAPLGKGQRALIVAPPRTGKTVLMQQIANAITHNHPEVKLIVLLIDERPEEVTDMQRTV 384
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV++STFDEP RHVQVAEMV+EKAKRLVE K DV+ILLDSITRLARAYNTV+P SGK
Sbjct: 385 KGEVVSSTFDEPPTRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVVPPSGK 444
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+L+GGVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+
Sbjct: 445 ILSGGVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNAEI 504
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
HL+R+L EKR++P +++NKSGTR+E+LL+ L ++W+LRK+L + +
Sbjct: 505 HLDRKLMEKRIFPCMDINKSGTRKEDLLVDKADLNRLWILRKVLAPMNV 553
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 163/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ + LR+Q+++F I K+ K+G+ I+G G LE+LPDG+GFLRS NY+ DDIY
Sbjct: 185 LKIENAAGLRRQDMIFEILKRAAKLGQDIYGSGVLEILPDGYGFLRSPDYNYLPGPDDIY 244
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRF L TG G +R PK+GERYFALLK+ +N
Sbjct: 245 VSPSQIRRFGLRTGDTVTGTVRPPKDGERYFALLKVDSLNFETTENGKDKILFDNLTPLY 304
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q IA+AIT NH E
Sbjct: 305 PNERLKLEHSPGEYTTRVVDLMAPLGKGQRALIVAPPRTGKTVLMQQIANAITHNHPEVK 364
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+MQR+V+GEV++STFDEP
Sbjct: 365 LIVLLIDERPEEVTDMQRTVKGEVVSSTFDEPPTRHVQVAEMVIEKAKRLVEHKHDVVIL 424
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 425 LDSITRLARAYNTVVPPSGKILSGGVDSNALHKPKRFFGAAR 466
>gi|162147052|ref|YP_001601513.1| transcription termination factor Rho [Gluconacetobacter
diazotrophicus PAl 5]
gi|209544114|ref|YP_002276343.1| transcription termination factor Rho [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785629|emb|CAP55200.1| Transcription termination factor rho [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531791|gb|ACI51728.1| transcription termination factor Rho [Gluconacetobacter
diazotrophicus PAl 5]
Length = 435
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/359 (64%), Positives = 293/359 (81%), Gaps = 17/359 (4%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G+LE+LPDGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR P++GE
Sbjct: 49 IHGEGTLEILPDGFGFLRSPEANYLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIES--------------- 112
RYFALLK+ +N E PE ++R FDNLTPL+P++ L +E +
Sbjct: 109 RYFALLKVNTINFEPPEAVRHRINFDNLTPLYPERRLKMEVEANAVGGEPEKVEKGKGAK 168
Query: 113 --KENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170
++ T R+IDL++PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+LIDE
Sbjct: 169 SQPKDFTPRVIDLVSPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDE 228
Query: 171 RPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230
RPEEVT+M RSVRGEV++STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLA
Sbjct: 229 RPEEVTDMARSVRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLA 288
Query: 231 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVI 290
RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI
Sbjct: 289 RAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVI 348
Query: 291 YEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+EEFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL++ +L K+WVLR++L +
Sbjct: 349 FEEFKGTGNSELILDRKLADKRTFPAIDITKSGTRKEELLVERSELSKMWVLRRILAPM 407
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV++STFDEPA
Sbjct: 194 VAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVSSTFDEPA 253
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 254 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 313
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 314 PKRFFGAAR 322
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 77/106 (72%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ + LRKQ++MFAI K + I G+G+LE+LPDGFGFLRS +NY+ DDIY
Sbjct: 21 LQIENASSLRKQDMMFAILKTLADNDQAIHGEGTLEILPDGFGFLRSPEANYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+SPSQ+RRF L TG +G+IR P++GERYFALLK+ +N P++
Sbjct: 81 ISPSQVRRFGLRTGDTVEGQIRAPRDGERYFALLKVNTINFEPPEA 126
>gi|452851785|ref|YP_007493469.1| Transcription termination factor Rho [Desulfovibrio piezophilus]
gi|451895439|emb|CCH48318.1| Transcription termination factor Rho [Desulfovibrio piezophilus]
Length = 451
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/344 (68%), Positives = 295/344 (85%), Gaps = 3/344 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
+IFGDG LE+LPDGFGFLRS +YM DDIY+SPSQIRRF L GD V G+IR PK G
Sbjct: 84 QIFGDGVLEILPDGFGFLRSPMYSYMPGPDDIYVSPSQIRRFGLRKGDVVSGQIRPPKEG 143
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ERYFALL++ ++ EKPE SKN LFDNLTPL+P++ L LE +N + RIIDL+AP
Sbjct: 144 ERYFALLRVSEIGYEKPEHSKNLVLFDNLTPLYPEEQLKLE---NGDKNYSSRIIDLLAP 200
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQRG++VA P++GK+I+LQ IA++I NH E +IV+LIDERPEEVT+MQR+V+ EV
Sbjct: 201 IGKGQRGVIVAPPRTGKTIMLQTIANSINANHPEVDLIVLLIDERPEEVTDMQRTVKAEV 260
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEP RHVQVA+MV+EKAKRLVE K+DV+ILLDSITRL RAYN V P+SG+VL+G
Sbjct: 261 VSSTFDEPPQRHVQVADMVIEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSG 320
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
G+D+NALQRPKRFFGAARNIEEGGSLTII+TALI+TGSRMD+VI+EEFKGTGNME++L+R
Sbjct: 321 GIDANALQRPKRFFGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNMELYLDR 380
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L+EKRVYPAI++N+SGTR+EELL+++D L ++W+LRKLL ++
Sbjct: 381 HLSEKRVYPAIDINRSGTRKEELLLEEDVLNRVWILRKLLSPMS 424
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 123/285 (43%), Positives = 159/285 (55%), Gaps = 80/285 (28%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
+ LEV + LRKQEL+F + ++ +IFGDG LE+LPDGFGFLRS +YM D
Sbjct: 54 AVQLEVENPSGLRKQELIFELLQQCASQNGQIFGDGVLEILPDGFGFLRSPMYSYMPGPD 113
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN----------------- 488
DIY+SPSQIRRF L G + G+IR PK GERYFALL++ ++
Sbjct: 114 DIYVSPSQIRRFGLRKGDVVSGQIRPPKEGERYFALLRVSEIGYEKPEHSKNLVLFDNLT 173
Query: 489 ------------------------------------VASPKSGKSIILQHIAHAITTNHS 512
VA P++GK+I+LQ IA++I NH
Sbjct: 174 PLYPEEQLKLENGDKNYSSRIIDLLAPIGKGQRGVIVAPPRTGKTIMLQTIANSINANHP 233
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQR+V+ EV++STFDEP
Sbjct: 234 EVDLIVLLIDERPEEVTDMQRTVKAEVVSSTFDEPPQRHVQVADMVIEKAKRLVERKRDV 293
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYN V P+SG+VL+GG+D+NALQRPKRFFGAAR
Sbjct: 294 VILLDSITRLGRAYNAVTPSSGRVLSGGIDANALQRPKRFFGAAR 338
>gi|39933373|ref|NP_945649.1| transcription termination factor Rho [Rhodopseudomonas palustris
CGA009]
gi|192288729|ref|YP_001989334.1| transcription termination factor Rho [Rhodopseudomonas palustris
TIE-1]
gi|39652998|emb|CAE25740.1| transcription termination factor rho [Rhodopseudomonas palustris
CGA009]
gi|192282478|gb|ACE98858.1| transcription termination factor Rho [Rhodopseudomonas palustris
TIE-1]
Length = 421
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/339 (67%), Positives = 291/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNSLNFEDPEKSKHKVNFDNLTPLFPDERFRLEIDDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VADKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRIL 390
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFA K+ + I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFACLKQLSAKETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNSLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDERFRLEIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|163869380|ref|YP_001610636.1| transcription termination factor Rho [Bartonella tribocorum CIP
105476]
gi|161019083|emb|CAK02641.1| transcription termination factor rho [Bartonella tribocorum CIP
105476]
Length = 421
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 294/345 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTIEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N EKPE + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEKPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVT 396
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPAQIQSFSLKTGDTIEGPIRSPKEGERYFALLKINTINFEKPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|410447001|ref|ZP_11301103.1| transcription termination factor Rho [SAR86 cluster bacterium
SAR86E]
gi|409979988|gb|EKO36740.1| transcription termination factor Rho [SAR86 cluster bacterium
SAR86E]
Length = 426
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 292/346 (84%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K G I+G G LE+L DGFGFLRS +Y + DDIY+SPSQ+R+F+L GD + G+I
Sbjct: 42 QAKEGVDIYGGGVLEILNDGFGFLRSPEGSYCSGPDDIYVSPSQVRKFSLRKGDEIHGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+ ERYFAL+ + +N E PE +K + LF+NLTPL P L LE+ S E+++ RI
Sbjct: 102 RPPKDSERYFALVYVDTINKEAPEKTKKKILFENLTPLFPTSRLTLEQGTGSAEDLSSRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL +PIGKGQRGL+V+ PK+GK+++LQ IAH+IT N+ E +IV+LIDERPEEVT+M R
Sbjct: 162 IDLASPIGKGQRGLIVSPPKAGKTLMLQSIAHSITKNNPEVELIVLLIDERPEEVTDMSR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+VRGEV+ASTFDEP RHVQVA+MV+EKAKRLVE KKDV+ILLDSITRL RAYN+V PAS
Sbjct: 222 TVRGEVVASTFDEPPTRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLGRAYNSVQPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+L+GGVDSNAL+RPKRFFGAARN+EEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNM
Sbjct: 282 GKILSGGVDSNALERPKRFFGAARNLEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+HLER++AEKR+YPAIN+ +SGTRRE+LL ++LQ++++LRK+L
Sbjct: 342 EIHLERKIAEKRIYPAINIRRSGTRREDLLTSPEELQRMFILRKIL 387
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/285 (41%), Positives = 154/285 (54%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + V RL+KQE++F IFK++ K G I+G G LE+L DGFGFLRS +Y + DDIY
Sbjct: 21 LGIEDVGRLKKQEIIFRIFKQQAKEGVDIYGGGVLEILNDGFGFLRSPEGSYCSGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP-KSGKSIILQHIAHAI 507
+SPSQ+R+F+L G G+IR PK+ ERYFAL+ + +N +P K+ K I+ +++
Sbjct: 81 VSPSQVRKFSLRKGDEIHGKIRPPKDSERYFALVYVDTINKEAPEKTKKKILFENLTPLF 140
Query: 508 TTN-------------------------------------------------HS------ 512
T+ HS
Sbjct: 141 PTSRLTLEQGTGSAEDLSSRIIDLASPIGKGQRGLIVSPPKAGKTLMLQSIAHSITKNNP 200
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+M R+VRGEV+ASTFDEP
Sbjct: 201 EVELIVLLIDERPEEVTDMSRTVRGEVVASTFDEPPTRHVQVADMVIEKAKRLVEHKKDV 260
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYN+V PASGK+L+GGVDSNAL+RPKRFFGAAR
Sbjct: 261 VILLDSITRLGRAYNSVQPASGKILSGGVDSNALERPKRFFGAAR 305
>gi|316931723|ref|YP_004106705.1| transcription termination factor Rho [Rhodopseudomonas palustris
DX-1]
gi|315599437|gb|ADU41972.1| transcription termination factor Rho [Rhodopseudomonas palustris
DX-1]
Length = 421
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/339 (67%), Positives = 291/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNSLNFEDPEKSKHKVNFDNLTPLFPDERFRLEIDDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VADKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRIL 390
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFA K+ + I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFACLKQLSAKETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNSLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDERFRLEIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|188580931|ref|YP_001924376.1| transcription termination factor Rho [Methylobacterium populi
BJ001]
gi|179344429|gb|ACB79841.1| transcription termination factor Rho [Methylobacterium populi
BJ001]
Length = 447
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/345 (67%), Positives = 292/345 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G++EVL DGFGFLRS SNY+ DDIY+SP+QIRRF L TGD VEG IR PK+GE
Sbjct: 78 IIGAGTVEVLQDGFGFLRSNDSNYLPGPDDIYISPTQIRRFGLRTGDTVEGPIRGPKDGE 137
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFAL+K+ +N E PE K++ FDNLTPL P K LE + +K++ + RIID+++PI
Sbjct: 138 RYFALIKVNTINFENPEKIKHKVHFDNLTPLFPTKRFKLELDNPTKKDFSPRIIDIVSPI 197
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 198 GKGQRALIVAPPRTGKTVLMQNIAQSITLNHPECYLIVLLIDERPEEVTDMIRSVKGEVI 257
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 258 ASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 317
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 318 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 377
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+++KR++PAI++ +SGTR+EELL+ D L+K +VLR++L + +T
Sbjct: 378 VSDKRIFPAIDITRSGTRKEELLVPPDSLKKTYVLRRILNPMGVT 422
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVIASTFDEPA
Sbjct: 206 VAPPRTGKTVLMQNIAQSITLNHPECYLIVLLIDERPEEVTDMIRSVKGEVIASTFDEPA 265
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 266 TRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 325
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 326 PKRFFGAAR 334
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 79/118 (66%), Gaps = 5/118 (4%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++EV + +RKQELMFAI K+ I G G++EVL DGFGFLRS SNY+ DDI
Sbjct: 49 EVEVENASTMRKQELMFAILKQLAANETEIIGAGTVEVLQDGFGFLRSNDSNYLPGPDDI 108
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
Y+SP+QIRRF L TG +G IR PK+GERYFAL+K+ +N +P+ ++H H
Sbjct: 109 YISPTQIRRFGLRTGDTVEGPIRGPKDGERYFALIKVNTINFENPEK-----IKHKVH 161
>gi|365859581|ref|ZP_09399438.1| transcription termination factor Rho [Acetobacteraceae bacterium
AT-5844]
gi|363712111|gb|EHL95813.1| transcription termination factor Rho [Acetobacteraceae bacterium
AT-5844]
Length = 424
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/348 (67%), Positives = 292/348 (83%), Gaps = 6/348 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I GDG+LE+LPDGFGFLRS SNY+ DDIY+SP+Q+RRF L GD VEG+IR PK+GE
Sbjct: 49 IHGDGTLEILPDGFGFLRSPQSNYLPGPDDIYVSPAQVRRFGLRIGDTVEGQIRAPKDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE-RNIES-----KENITGRII 121
RYFALLK+ VN E PE ++R FDNLTPL+P + L +E N E +++ T R+I
Sbjct: 109 RYFALLKVNTVNFEPPEALRHRINFDNLTPLYPTRRLKMENENAEPPPKGMQKDNTPRVI 168
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIG GQR L+VA P++GK+++LQ+IA +I+ NH + +IV+LIDERPEEVT+M R+
Sbjct: 169 DLVAPIGMGQRALVVAPPRTGKTVMLQNIARSISANHPDVFLIVLLIDERPEEVTDMART 228
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEV+ASTFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRL RAYN+V+P+SG
Sbjct: 229 VRGEVVASTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLGRAYNSVVPSSG 288
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E
Sbjct: 289 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSE 348
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+ L+R+L++KRV+PAI++ KSGTR+EE+L+ L K+WVLR++L +
Sbjct: 349 LILDRKLSDKRVFPAIDITKSGTRKEEVLVDRATLSKMWVLRRILNPM 396
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IA +I+ NH + +IV+LIDERPEEVT+M R+VRGEV+ASTFDEPA
Sbjct: 183 VAPPRTGKTVMLQNIARSISANHPDVFLIVLLIDERPEEVTDMARTVRGEVVASTFDEPA 242
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN+V+P+SGKVLTGGVD+NALQR
Sbjct: 243 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLGRAYNSVVPSSGKVLTGGVDANALQR 302
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 303 PKRFFGAAR 311
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 4/116 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L AE+ L++ + LRKQ++MFAI K+ + + I GDG+LE+LPDGFGFLRS S
Sbjct: 15 LAFAES----LQIENASSLRKQDMMFAILKQLAENDQAIHGDGTLEILPDGFGFLRSPQS 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
NY+ DDIY+SP+Q+RRF L G +G+IR PK+GERYFALLK+ VN P++
Sbjct: 71 NYLPGPDDIYVSPAQVRRFGLRIGDTVEGQIRAPKDGERYFALLKVNTVNFEPPEA 126
>gi|402820061|ref|ZP_10869628.1| rho protein [alpha proteobacterium IMCC14465]
gi|402510804|gb|EJW21066.1| rho protein [alpha proteobacterium IMCC14465]
Length = 421
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 295/339 (87%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVLPDGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG+IR PK+GE
Sbjct: 52 IIGEGVVEVLPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGDIRSPKDGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E P+ +++ FDNLTPL+P++ +L+E + ++++ + RIID++AP+
Sbjct: 112 RYFALLKVNSINFEDPDKIRHKVNFDNLTPLYPEERILMEFDNPAEKDRSSRIIDIVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IA +I NH E +IV+LIDERPEEVT+MQRSV GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLLQNIAKSIAANHPECYLIVLLIDERPEEVTDMQRSVSGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIE+GGSLTII+TALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEQGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KRV+P+I++ KSGTR+EELLI + L KI+VLR++L
Sbjct: 352 ISDKRVFPSIDIMKSGTRKEELLIDKETLSKIYVLRRIL 390
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/295 (46%), Positives = 170/295 (57%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + +RKQ++MFAI K+ + G I G+G +EVLPDGFGFLRS +
Sbjct: 18 LALAEENDIE----NASTMRKQDMMFAILKELAEQGIFIIGEGVVEVLPDGFGFLRSPDA 73
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------K 486
NY+ DDIY+SPSQIRRF+L TG +G+IR PK+GERYFALLK+ K
Sbjct: 74 NYLPGPDDIYVSPSQIRRFSLRTGDTVEGDIRSPKDGERYFALLKVNSINFEDPDKIRHK 133
Query: 487 VN--------------------------------------------VASPKSGKSIILQH 502
VN VA P++GK+++LQ+
Sbjct: 134 VNFDNLTPLYPEERILMEFDNPAEKDRSSRIIDIVAPLGKGQRALIVAPPRTGKTVLLQN 193
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IA +I NH E +IV+LIDERPEEVT+MQRSV GEV++STFDEPA
Sbjct: 194 IAKSIAANHPECYLIVLLIDERPEEVTDMQRSVSGEVVSSTFDEPAARHVQVAEMVIEKA 253
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 254 KRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|357032315|ref|ZP_09094254.1| transcription termination factor Rho [Gluconobacter morbifer G707]
gi|356414087|gb|EHH67735.1| transcription termination factor Rho [Gluconobacter morbifer G707]
Length = 466
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/355 (65%), Positives = 291/355 (81%), Gaps = 13/355 (3%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG+LE+LPDGFGFLRS +NY+ DDIY+SP+Q+RRF L GD VEG+IR P++GE
Sbjct: 84 IYGDGTLEILPDGFGFLRSAEANYLPGPDDIYISPTQVRRFGLRPGDTVEGQIRAPRDGE 143
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE-------------RNIESKE 114
RYF+LLK+ +N E P+ + R FDNLTPL+P++ L +E + + +
Sbjct: 144 RYFSLLKVDTINFESPDTVRTRINFDNLTPLYPERRLKMEVEQAETAPVESRGKGKKDQR 203
Query: 115 NITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
+ T R+IDL+ PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEE
Sbjct: 204 DYTPRVIDLVTPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEE 263
Query: 175 VTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYN 234
VT+M RSVRGEVI+STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYN
Sbjct: 264 VTDMARSVRGEVISSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYN 323
Query: 235 TVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEF 294
TV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEF
Sbjct: 324 TVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEF 383
Query: 295 KGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
KGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ +L K+WVLR++L +
Sbjct: 384 KGTGNAELILDRKLADKRTFPAIDITKSGTRKEELLVDRAELSKMWVLRRILAPM 438
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEVI+STFDEPA
Sbjct: 225 VAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVISSTFDEPA 284
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 285 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 344
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 345 PKRFFGAAR 353
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 82/112 (73%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ + +RKQ++MFAI K + + I+GDG+LE+LPDGFGFLRS +NY+ DDI
Sbjct: 55 ELEIENASSMRKQDIMFAILKTLAERDQAIYGDGTLEILPDGFGFLRSAEANYLPGPDDI 114
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
Y+SP+Q+RRF L G +G+IR P++GERYF+LLK+ +N SP + ++ I
Sbjct: 115 YISPTQVRRFGLRPGDTVEGQIRAPRDGERYFSLLKVDTINFESPDTVRTRI 166
>gi|365896118|ref|ZP_09434205.1| Transcription termination factor Rho [Bradyrhizobium sp. STM 3843]
gi|365423127|emb|CCE06747.1| Transcription termination factor Rho [Bradyrhizobium sp. STM 3843]
Length = 421
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 289/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KR +PAI++ +SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VADKRTFPAIDIARSGTRKEELITDSQNLKKMYVLRRIL 390
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/283 (46%), Positives = 162/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTMRKQELMFAILKQLAIAETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN---------- 488
PSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 86 PSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPD 145
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IAH+IT NH E
Sbjct: 146 QRFRLELEDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANHPEC 205
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 206 YLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVI 265
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 266 LLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|402826571|ref|ZP_10875751.1| transcription termination factor Rho [Sphingomonas sp. LH128]
gi|402259875|gb|EJU10058.1| transcription termination factor Rho [Sphingomonas sp. LH128]
Length = 418
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 226/345 (65%), Positives = 294/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I G G++EVL DGFGFLR+ +NY+A DDIY+SP+Q+R++ L TGD VEGEIR PK
Sbjct: 46 GEEIIGQGTIEVLTDGFGFLRNAEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPK 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFA+ K+ VN + P+ ++R FDNLTPL+P + L L+ + ++ + R+IDL+
Sbjct: 106 EGERYFAITKLMSVNFDDPDAVRHRVNFDNLTPLYPNERLRLDSLDPTVKDKSARVIDLV 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ++A AIT NH E ++V+L+DERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNMAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ D+L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVAKDQLTKMWVLRRILMQM 390
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 170/306 (55%), Gaps = 88/306 (28%)
Query: 369 KNLLKDACMPLV-LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLP 427
K L K + LV +AE +L V S LR+Q+L+FAI K+ + GE I G G++EVL
Sbjct: 4 KELKKKSSAELVEMAE----ELGVESASTLRRQDLIFAILKEVAEDGEEIIGQGTIEVLT 59
Query: 428 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKV 487
DGFGFLR+ +NY+A DDIY+SP+Q+R++ L TG +GEIR PK GERYFA+ K+ V
Sbjct: 60 DGFGFLRNAEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPKEGERYFAITKLMSV 119
Query: 488 NVASP--------------------------------KSGKSIIL--------------- 500
N P KS + I L
Sbjct: 120 NFDDPDAVRHRVNFDNLTPLYPNERLRLDSLDPTVKDKSARVIDLVSPQGKGQRALIVAP 179
Query: 501 ---------QHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--- 548
Q++A AIT NH E ++V+L+DERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 180 PRTGKTVLLQNMAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPAQRH 239
Query: 549 ------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKR 584
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKR
Sbjct: 240 VQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKR 299
Query: 585 FFGAAR 590
FFGAAR
Sbjct: 300 FFGAAR 305
>gi|257456672|ref|ZP_05621865.1| transcription termination factor Rho [Treponema vincentii ATCC
35580]
gi|257445939|gb|EEV20989.1| transcription termination factor Rho [Treponema vincentii ATCC
35580]
Length = 543
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/345 (68%), Positives = 293/345 (84%), Gaps = 3/345 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G IF G+LE+LPDG+GFLRS ++Y++ SDDIY+SPSQIR FNL TGD V G+IR
Sbjct: 167 TENGGIIFASGALEILPDGYGFLRSPQNSYLSGSDDIYISPSQIRLFNLKTGDTVYGQIR 226
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GER+FALL+++ VN E ++++R FDNLTPL+P++ L LE + E + RI+
Sbjct: 227 SPKEGERFFALLRVESVNFEDVSVAQSRIPFDNLTPLYPREKLNLE---TTSELYSTRIM 283
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL PIGKGQR L+VA P++GK+I++Q IA+AIT NH E +IV+LIDERPEEVT+M+R+
Sbjct: 284 DLFCPIGKGQRSLIVAPPRTGKTILMQQIANAITQNHPEVYLIVLLIDERPEEVTDMERT 343
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V GEVI+STFDE A RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRLARAYN +P SG
Sbjct: 344 VHGEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNQTVPTSG 403
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVDSNAL +PKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTGNME
Sbjct: 404 KVLSGGVDSNALHKPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNME 463
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
++L+RRL+++R++PAIN+ KSGTR+EELLI + LQ+IW+LRK++
Sbjct: 464 INLDRRLSDRRIFPAINIKKSGTRKEELLINEADLQRIWLLRKVI 508
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 158/274 (57%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++KQE++F I K T+ G IF G+LE+LPDG+GFLRS ++Y++ SDDIY+SPSQIR
Sbjct: 153 MKKQEIIFFILKHHTENGGIIFASGALEILPDGYGFLRSPQNSYLSGSDDIYISPSQIRL 212
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GER+FALL+++ VN
Sbjct: 213 FNLKTGDTVYGQIRSPKEGERFFALLRVESVNFEDVSVAQSRIPFDNLTPLYPREKLNLE 272
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I++Q IA+AIT NH E +IV+LIDE
Sbjct: 273 TTSELYSTRIMDLFCPIGKGQRSLIVAPPRTGKTILMQQIANAITQNHPEVYLIVLLIDE 332
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V GEVI+STFDE A L + +LA
Sbjct: 333 RPEEVTDMERTVHGEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLA 392
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGKVL+GGVDSNAL +PKRFFGAAR
Sbjct: 393 RAYNQTVPTSGKVLSGGVDSNALHKPKRFFGAAR 426
>gi|399065160|ref|ZP_10747782.1| transcription termination factor Rho [Novosphingobium sp. AP12]
gi|398029979|gb|EJL23420.1| transcription termination factor Rho [Novosphingobium sp. AP12]
Length = 418
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/345 (65%), Positives = 295/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I G G++EVL DGFGFLRS +NY+A DDIY+SP+Q+R++ L TGD VEGEIR P+
Sbjct: 46 GEEIVGQGTIEVLTDGFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPR 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFA+ K+ VN + P+ ++R FDNLTPL+P + L L+ + ++ + R+IDLI
Sbjct: 106 DGERYFAITKLVTVNFDDPDAVRHRVNFDNLTPLYPDQRLKLDSLDPTVKDKSARVIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ++A AIT NH E ++V+L+DERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNMAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ D+L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVPRDQLSKMWVLRRILMQM 390
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 162/286 (56%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V LR+Q+L+FAI K+ ++ GE I G G++EVL DGFGFLRS +NY+A DDI
Sbjct: 20 ELGVEGASTLRRQDLIFAILKEVSEDGEEIVGQGTIEVLTDGFGFLRSPEANYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP--------------- 492
Y+SP+Q+R++ L TG +GEIR P++GERYFA+ K+ VN P
Sbjct: 80 YVSPNQVRKWGLRTGDTVEGEIRAPRDGERYFAITKLVTVNFDDPDAVRHRVNFDNLTPL 139
Query: 493 -----------------KSGKSIIL------------------------QHIAHAITTNH 511
KS + I L Q++A AIT NH
Sbjct: 140 YPDQRLKLDSLDPTVKDKSARVIDLISPQGKGQRALIVAPPRTGKTVLLQNMAKAITDNH 199
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E ++V+L+DERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 PEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRD 259
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 305
>gi|170739672|ref|YP_001768327.1| transcription termination factor Rho [Methylobacterium sp. 4-46]
gi|168193946|gb|ACA15893.1| transcription termination factor Rho [Methylobacterium sp. 4-46]
Length = 436
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 292/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G++EVL DGFGFLRS SNY+ DDIY+SP+QIRRF L TGD VEG IR PK+GE
Sbjct: 67 IIGAGTVEVLQDGFGFLRSSDSNYLPGPDDIYVSPTQIRRFGLRTGDTVEGPIRGPKDGE 126
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E P+ K++ FDNLTPL P + LE + ++++ + R+ID+++PI
Sbjct: 127 RYFALLKVNTINFENPDKIKHKVHFDNLTPLFPTQRFKLELSEPTRKDFSPRVIDIVSPI 186
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 187 GKGQRALIVAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMQRSVKGEVI 246
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 247 ASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 306
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 307 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 366
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR +PAI++ +SGTR+EELL+ D L+K +VLR++L + +T
Sbjct: 367 VADKRTFPAIDITRSGTRKEELLVPPDTLKKTYVLRRILNPMGVTD 412
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+MQRSV+GEVIASTFDEPA
Sbjct: 195 VAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPA 254
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 255 TRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 314
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 315 PKRFFGAAR 323
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 78/118 (66%), Gaps = 5/118 (4%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++EV + +RKQELMFAI K+ I G G++EVL DGFGFLRS SNY+ DDI
Sbjct: 38 EVEVENASTMRKQELMFAILKQLAAKDVEIIGAGTVEVLQDGFGFLRSSDSNYLPGPDDI 97
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
Y+SP+QIRRF L TG +G IR PK+GERYFALLK+ +N +P ++H H
Sbjct: 98 YVSPTQIRRFGLRTGDTVEGPIRGPKDGERYFALLKVNTINFENPDK-----IKHKVH 150
>gi|114326723|ref|YP_743880.1| transcription termination factor Rho [Granulibacter bethesdensis
CGDNIH1]
gi|114314897|gb|ABI60957.1| transcription termination factor rho [Granulibacter bethesdensis
CGDNIH1]
Length = 447
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/353 (67%), Positives = 294/353 (83%), Gaps = 6/353 (1%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
+ I G+G+LE+L DGFGFLRS +N++ DDIY+SPSQ+RRF L GD V G+IR PK+
Sbjct: 70 QAIHGEGTLEILSDGFGFLRSPEANFLPGPDDIYVSPSQVRRFGLRNGDTVGGQIRAPKD 129
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE-RNIES-----KENITGR 119
GERYFALLK+ VN E PE ++R FDNLTPL+P + L +E N +S ++ T R
Sbjct: 130 GERYFALLKLDTVNFEAPESVRHRINFDNLTPLYPDQRLKMEVENFQSVAKGPGKDCTPR 189
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
+IDLIAPIGKGQR L+VA P++GK+++LQ+IA AI NH EA ++V+LIDERPEEVT+M
Sbjct: 190 VIDLIAPIGKGQRALIVAPPRTGKTVMLQNIATAIAENHPEAFLMVLLIDERPEEVTDMA 249
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RSV+GEVIASTFDEPA RHVQV+EMVLEKAKRLVE K+DV+ILLDSITRLARAYNTV+P+
Sbjct: 250 RSVKGEVIASTFDEPATRHVQVSEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPS 309
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN
Sbjct: 310 SGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGN 369
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
E+ L+R+L++KR +PAI++ KSGTR+EE+L+ L K+WVLR++L + T
Sbjct: 370 SELVLDRKLSDKRTFPAIDITKSGTRKEEMLVDKATLSKMWVLRRILNPMGTT 422
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IA AI NH EA ++V+LIDERPEEVT+M RSV+GEVIASTFDEPA
Sbjct: 206 VAPPRTGKTVMLQNIATAIAENHPEAFLMVLLIDERPEEVTDMARSVKGEVIASTFDEPA 265
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 266 TRHVQVSEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 325
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 326 PKRFFGAAR 334
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 76/106 (71%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L++ + LRKQ++MFAI K + + I G+G+LE+L DGFGFLRS +N++ DDIY
Sbjct: 44 LQIENASSLRKQDMMFAILKNLAENDQAIHGEGTLEILSDGFGFLRSPEANFLPGPDDIY 103
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+SPSQ+RRF L G G+IR PK+GERYFALLK+ VN +P+S
Sbjct: 104 VSPSQVRRFGLRNGDTVGGQIRAPKDGERYFALLKLDTVNFEAPES 149
>gi|86157118|ref|YP_463903.1| transcription termination factor Rho [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773629|gb|ABC80466.1| transcription termination factor Rho [Anaeromyxobacter dehalogenans
2CP-C]
Length = 437
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/339 (67%), Positives = 287/339 (84%), Gaps = 3/339 (0%)
Query: 10 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERY 69
G+G+LEVLPDGFGFLRS +Y+ DDIY+SPSQIRRFNL TGD V G +R PK GERY
Sbjct: 69 GEGTLEVLPDGFGFLRSPDFSYLPGPDDIYVSPSQIRRFNLRTGDTVRGTVRQPKEGERY 128
Query: 70 FALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGK 129
FALLK+ +NGE PE S+ + LFDNLTPL+P + L LE + +T R++DL APIGK
Sbjct: 129 FALLKVDSINGEPPEESQAKVLFDNLTPLYPTQRLTLEHD---PAEMTTRVVDLFAPIGK 185
Query: 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIAS 189
GQR L+V+ P++GK+++LQ+IAHA+TTNH E +IV+LIDERPEEVT+M+R+VRGEV+AS
Sbjct: 186 GQRCLIVSPPRAGKTVLLQNIAHAVTTNHPECTLIVLLIDERPEEVTDMERTVRGEVVAS 245
Query: 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVD 249
TFDEPA RHVQVAEMV+EKA+RLVE KKDV+ILLDSITRLARAYN+ +P SGK+L+GGVD
Sbjct: 246 TFDEPATRHVQVAEMVIEKARRLVEHKKDVVILLDSITRLARAYNSTVPPSGKILSGGVD 305
Query: 250 SNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLA 309
SNAL +PKRFFGAARNIEEGGSLTII TAL++TGSRMD+VI+EEFKGTGN E+ L+R+L
Sbjct: 306 SNALHKPKRFFGAARNIEEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLDRKLM 365
Query: 310 EKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348
EKR++P +++ KSGTR+EELL+ D L KI++LR+ + +
Sbjct: 366 EKRIFPCMDIGKSGTRKEELLLPADWLSKIYILRQTILN 404
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/289 (44%), Positives = 167/289 (57%), Gaps = 86/289 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGER------IFGDGSLEVLPDGFGFLRSQGSNYM 441
DL V + L+KQ+L+FAI + ++K E + G+G+LEVLPDGFGFLRS +Y+
Sbjct: 32 DLNVEAAGALKKQDLIFAILQAQSKAAEAAKEEMEVGGEGTLEVLPDGFGFLRSPDFSYL 91
Query: 442 ASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------- 488
DDIY+SPSQIRRFNL TG +G +R PK GERYFALLK+ +N
Sbjct: 92 PGPDDIYVSPSQIRRFNLRTGDTVRGTVRQPKEGERYFALLKVDSINGEPPEESQAKVLF 151
Query: 489 ----------------------------------------VASPKSGKSIILQHIAHAIT 508
V+ P++GK+++LQ+IAHA+T
Sbjct: 152 DNLTPLYPTQRLTLEHDPAEMTTRVVDLFAPIGKGQRCLIVSPPRAGKTVLLQNIAHAVT 211
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------- 548
TNH E +IV+LIDERPEEVT+M+R+VRGEV+ASTFDEPA
Sbjct: 212 TNHPECTLIVLLIDERPEEVTDMERTVRGEVVASTFDEPATRHVQVAEMVIEKARRLVEH 271
Query: 549 -------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN+ +P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 272 KKDVVILLDSITRLARAYNSTVPPSGKILSGGVDSNALHKPKRFFGAAR 320
>gi|347761106|ref|YP_004868667.1| transcription termination factor Rho [Gluconacetobacter xylinus
NBRC 3288]
gi|347580076|dbj|BAK84297.1| transcription termination factor Rho [Gluconacetobacter xylinus
NBRC 3288]
Length = 436
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/362 (64%), Positives = 290/362 (80%), Gaps = 18/362 (4%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
+ I+GDG+LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR P++
Sbjct: 47 QAIYGDGTLEILSDGFGFLRSPEANYLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRD 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE------------------ 107
GERYFALLK+ +N E PE + R FDNLTPL+P++ L +E
Sbjct: 107 GERYFALLKVNAINFEPPEAVRQRINFDNLTPLYPERRLKMEVENSAIGGADEALTNGKG 166
Query: 108 RNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167
+ + T R+IDL++PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+L
Sbjct: 167 KGKTPNRDFTSRVIDLVSPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLL 226
Query: 168 IDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSIT 227
IDERPEEVT+M RSVRGEV++STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSIT
Sbjct: 227 IDERPEEVTDMARSVRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSIT 286
Query: 228 RLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD 287
RLARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD
Sbjct: 287 RLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMD 346
Query: 288 DVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY 347
+VI+EEFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ L K+WVLR++L
Sbjct: 347 EVIFEEFKGTGNSELILDRKLADKRTFPAIDITKSGTRKEELLVDRADLAKMWVLRRILA 406
Query: 348 SL 349
+
Sbjct: 407 PM 408
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV++STFDEPA
Sbjct: 195 VAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVSSTFDEPA 254
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 255 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 314
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 315 PKRFFGAAR 323
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 380 VLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSN 439
+LA +++++E + LRKQELMF I K + I+GDG+LE+L DGFGFLRS +N
Sbjct: 14 LLAYAESLNIE--NASSLRKQELMFTILKTLADNDQAIYGDGTLEILSDGFGFLRSPEAN 71
Query: 440 YMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+ DDIY+SPSQ+RRF L TG +G+IR P++GERYFALLK+ +N P++
Sbjct: 72 YLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRDGERYFALLKVNAINFEPPEA 126
>gi|349686320|ref|ZP_08897462.1| transcription termination factor Rho [Gluconacetobacter oboediens
174Bp2]
Length = 436
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/362 (64%), Positives = 290/362 (80%), Gaps = 18/362 (4%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
+ I+GDG+LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR P++
Sbjct: 47 QAIYGDGTLEILSDGFGFLRSPEANYLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRD 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE------------------ 107
GERYFALLK+ +N E PE + R FDNLTPL+P++ L +E
Sbjct: 107 GERYFALLKVNAINFEPPEAVRQRINFDNLTPLYPERRLKMEVENSAVGGATEPPANGKG 166
Query: 108 RNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167
+ + T R+IDL++PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+L
Sbjct: 167 KGKTPNRDFTSRVIDLVSPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLL 226
Query: 168 IDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSIT 227
IDERPEEVT+M RSVRGEV++STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSIT
Sbjct: 227 IDERPEEVTDMARSVRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSIT 286
Query: 228 RLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD 287
RLARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD
Sbjct: 287 RLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMD 346
Query: 288 DVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY 347
+VI+EEFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ L K+WVLR++L
Sbjct: 347 EVIFEEFKGTGNSELILDRKLADKRTFPAIDITKSGTRKEELLVDRADLAKMWVLRRILA 406
Query: 348 SL 349
+
Sbjct: 407 PM 408
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV++STFDEPA
Sbjct: 195 VAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVSSTFDEPA 254
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 255 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 314
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 315 PKRFFGAAR 323
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 380 VLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSN 439
+LA +++++E + LRKQELMF I K + I+GDG+LE+L DGFGFLRS +N
Sbjct: 14 LLAYAESLNIE--NASSLRKQELMFTILKTLADNDQAIYGDGTLEILSDGFGFLRSPEAN 71
Query: 440 YMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+ DDIY+SPSQ+RRF L TG +G+IR P++GERYFALLK+ +N P++
Sbjct: 72 YLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRDGERYFALLKVNAINFEPPEA 126
>gi|258404970|ref|YP_003197712.1| transcription termination factor Rho [Desulfohalobium retbaense DSM
5692]
gi|257797197|gb|ACV68134.1| transcription termination factor Rho [Desulfohalobium retbaense DSM
5692]
Length = 415
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 291/339 (85%), Gaps = 3/339 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LE+LPDGFGFLRS +Y+ DDIY+SPSQIRRF L GD V G+IR PK GE
Sbjct: 49 IYGEGVLEILPDGFGFLRSPMYSYIPGPDDIYVSPSQIRRFGLRKGDVVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALL++++V PE SKN LFDNLTP++P + ++E ES + R++DL+API
Sbjct: 109 RYFALLRVQQVGFATPEESKNLVLFDNLTPIYPDQRFVMETGAES---YSSRVVDLLAPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ IA++IT NH ++ +IV+LIDERPEEVT+M+R+V GEV+
Sbjct: 166 GKGQRGLIVAPPRTGKTMLLQSIANSITANHPDSYLIVLLIDERPEEVTDMERTVDGEVV 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQVAEMVLEKAKRLVE KKDV+ILLDSITR RA+N +IP+SG+VL+GG
Sbjct: 226 SSTFDEPPQRHVQVAEMVLEKAKRLVERKKDVVILLDSITRFGRAHNAIIPSSGRVLSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
+DSNALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGNME++L+R
Sbjct: 286 LDSNALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDRH 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
LA+KRV+PAI++N+SGTR+E+LL+ ++ L ++W+LRKLL
Sbjct: 346 LADKRVFPAIDINRSGTRKEDLLLDENVLNRVWILRKLL 384
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 155/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
LRKQEL+FAI I+G+G LE+LPDGFGFLRS +Y+ DDIY+SPSQIRR
Sbjct: 29 LRKQELIFAILSSCASQNGSIYGEGVLEILPDGFGFLRSPMYSYIPGPDDIYVSPSQIRR 88
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
F L G + G+IR PK GERYFALL++++V
Sbjct: 89 FGLRKGDVVSGQIRPPKEGERYFALLRVQQVGFATPEESKNLVLFDNLTPIYPDQRFVME 148
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+++LQ IA++IT NH ++ +IV+LIDE
Sbjct: 149 TGAESYSSRVVDLLAPIGKGQRGLIVAPPRTGKTMLLQSIANSITANHPDSYLIVLLIDE 208
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V GEV++STFDEP L + +
Sbjct: 209 RPEEVTDMERTVDGEVVSSTFDEPPQRHVQVAEMVLEKAKRLVERKKDVVILLDSITRFG 268
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RA+N +IP+SG+VL+GG+DSNALQRPKRFFGAAR
Sbjct: 269 RAHNAIIPSSGRVLSGGLDSNALQRPKRFFGAAR 302
>gi|90421816|ref|YP_530186.1| transcription termination factor Rho [Rhodopseudomonas palustris
BisB18]
gi|90103830|gb|ABD85867.1| transcription termination factor Rho [Rhodopseudomonas palustris
BisB18]
Length = 421
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 290/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE S+++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDSSRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRIL 390
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 163/286 (56%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFA K+ I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFASLKQLAIKETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDQRFRLELEDSSRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|58039531|ref|YP_191495.1| transcription termination factor Rho [Gluconobacter oxydans 621H]
gi|58001945|gb|AAW60839.1| Transcription termination factor Rho [Gluconobacter oxydans 621H]
Length = 433
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/357 (64%), Positives = 291/357 (81%), Gaps = 15/357 (4%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G+LE+LPDGFGFLRS +NY+ DDIY+SP+Q+RRF L GD VEG+IR P++GE
Sbjct: 49 IYGEGTLEILPDGFGFLRSPEANYLPGPDDIYISPAQVRRFGLRPGDTVEGQIRAPRDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE---------------RNIES 112
RYFALLK+ +N E PE + R FDNLTPL+P++ L +E + +
Sbjct: 109 RYFALLKVNTINFEAPETVRTRINFDNLTPLYPERRLKMEVEQSEAAVTESSPRGKGKKD 168
Query: 113 KENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ + T R+IDL+ PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+LIDERP
Sbjct: 169 QRDYTPRVIDLVTPIGMGQRALIVAPPRTGKTVMLQSIAASISANHPEVFLIVLLIDERP 228
Query: 173 EEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232
EEVT+M RSVRGEV++STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARA
Sbjct: 229 EEVTDMARSVRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARA 288
Query: 233 YNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYE 292
YNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+E
Sbjct: 289 YNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFE 348
Query: 293 EFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ +L K+WVLR++L +
Sbjct: 349 EFKGTGNAELILDRKLADKRTFPAIDITKSGTRKEELLVDRAELSKMWVLRRILAPM 405
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV++STFDEPA
Sbjct: 192 VAPPRTGKTVMLQSIAASISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVSSTFDEPA 251
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 252 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 311
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 312 PKRFFGAAR 320
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 84/112 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ +V +RKQ++MFAI K + + I+G+G+LE+LPDGFGFLRS +NY+ DDI
Sbjct: 20 ELEIENVSSMRKQDIMFAILKTLAERDQAIYGEGTLEILPDGFGFLRSPEANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
Y+SP+Q+RRF L G +G+IR P++GERYFALLK+ +N +P++ ++ I
Sbjct: 80 YISPAQVRRFGLRPGDTVEGQIRAPRDGERYFALLKVNTINFEAPETVRTRI 131
>gi|330991282|ref|ZP_08315233.1| Transcription termination factor Rho [Gluconacetobacter sp. SXCC-1]
gi|329761301|gb|EGG77794.1| Transcription termination factor Rho [Gluconacetobacter sp. SXCC-1]
Length = 436
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/362 (64%), Positives = 290/362 (80%), Gaps = 18/362 (4%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
+ I+GDG+LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR P++
Sbjct: 47 QAIYGDGTLEILSDGFGFLRSPEANYLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRD 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE------------------ 107
GERYFALLK+ +N E PE + R FDNLTPL+P++ L +E
Sbjct: 107 GERYFALLKVNAINFEPPEAVRQRINFDNLTPLYPERRLKMEVENSAVGGADEVPTNGKG 166
Query: 108 RNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167
+ + T R+IDL++PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+L
Sbjct: 167 KGKAPNRDFTSRVIDLVSPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLL 226
Query: 168 IDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSIT 227
IDERPEEVT+M RSVRGEV++STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSIT
Sbjct: 227 IDERPEEVTDMARSVRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSIT 286
Query: 228 RLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD 287
RLARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD
Sbjct: 287 RLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMD 346
Query: 288 DVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY 347
+VI+EEFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ L K+WVLR++L
Sbjct: 347 EVIFEEFKGTGNSELILDRKLADKRTFPAIDITKSGTRKEELLVDRADLAKMWVLRRILA 406
Query: 348 SL 349
+
Sbjct: 407 PM 408
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV++STFDEPA
Sbjct: 195 VAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVSSTFDEPA 254
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 255 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 314
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 315 PKRFFGAAR 323
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 380 VLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSN 439
+LA +++++E + LRKQELMF I K + I+GDG+LE+L DGFGFLRS +N
Sbjct: 14 LLAYAESLNIE--NASSLRKQELMFTILKTLADNDQAIYGDGTLEILSDGFGFLRSPEAN 71
Query: 440 YMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+ DDIY+SPSQ+RRF L TG +G+IR P++GERYFALLK+ +N P++
Sbjct: 72 YLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRDGERYFALLKVNAINFEPPEA 126
>gi|114571509|ref|YP_758189.1| transcription termination factor Rho [Maricaulis maris MCS10]
gi|114341971|gb|ABI67251.1| transcription termination factor Rho [Maricaulis maris MCS10]
Length = 436
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/339 (67%), Positives = 294/339 (86%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G +EVL DGFGFLRS SNY+A DDIY+SP+QIR+F L TGD VEGEIR P++GE
Sbjct: 67 IHGGGVMEVLQDGFGFLRSPESNYLAGPDDIYVSPTQIRKFGLRTGDTVEGEIRSPRDGE 126
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N + PE ++++ FDNLTPL+P+ +E + ++ +GR+ID+++P+
Sbjct: 127 RYFALLKVSTINFQDPESARHKVHFDNLTPLYPESRFNMELADPTVKDRSGRVIDIVSPL 186
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAHAI +NH + ++V+LIDERPEEVT+MQR+V+GEVI
Sbjct: 187 GKGQRGLIVAPPRTGKTVLLQNIAHAIESNHPDCYLMVLLIDERPEEVTDMQRTVKGEVI 246
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 247 SSTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 306
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIE GGSLTIIATALI+TGSRMD+VI+EEFKGTGN EV L+R+
Sbjct: 307 VDANALQRPKRFFGAARNIEHGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEVVLDRK 366
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KRV+PAI++ KSGTR+EELL+ +LQK++VLR++L
Sbjct: 367 VADKRVFPAIDILKSGTRKEELLVDRGQLQKMYVLRRIL 405
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 142/285 (49%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--GF---------------- 430
LE+ + LRKQ +MFAI K + I G G +EVL D GF
Sbjct: 39 LEIENASSLRKQAMMFAILKSLAERDVEIHGGGVMEVLQDGFGFLRSPESNYLAGPDDIY 98
Query: 431 ------------------GFLRS--QGSNYMA--SSDDIYLSPSQIRRFNLHTGIL---- 464
G +RS G Y A I + R +H L
Sbjct: 99 VSPTQIRKFGLRTGDTVEGEIRSPRDGERYFALLKVSTINFQDPESARHKVHFDNLTPLY 158
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
+ E+ P +R ++ I + + VA P++GK+++LQ+IAHAI +NH
Sbjct: 159 PESRFNMELADPTVKDRSGRVIDIVSPLGKGQRGLIVAPPRTGKTVLLQNIAHAIESNHP 218
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
+ ++V+LIDERPEEVT+MQR+V+GEVI+STFDEPA
Sbjct: 219 DCYLMVLLIDERPEEVTDMQRTVKGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHGRDV 278
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 279 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 323
>gi|407453176|ref|YP_006732495.1| transcription termination factor Rho [Candidatus Portiera
aleyrodidarum BT-QVLC]
gi|405779893|gb|AFS18896.1| Transcription termination factor Rho [Candidatus Portiera
aleyrodidarum BT-QVLC]
Length = 421
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/349 (65%), Positives = 297/349 (85%), Gaps = 3/349 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+G+G L+VL +GFGFLRS S+Y DIY+SPSQIRRFNL GD + G+I
Sbjct: 42 QAKGGEDIYGEGVLDVLQEGFGFLRSSDSSYQPGPSDIYVSPSQIRRFNLRKGDSIYGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ K+N ++ E K + LF+NLTPL P L+++ S +++T RI
Sbjct: 102 RPPKDGERYFALLKVNKINFDRIETVKQKILFENLTPLFPTYRLIMD---GSTDDLTARI 158
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DL+APIGKGQRGL+V+ PK+GK++++Q+IA++I N E +I +LIDERPEEVTEM R
Sbjct: 159 LDLVAPIGKGQRGLIVSPPKAGKTMMMQNIANSIVRNSPECYLIFLLIDERPEEVTEMSR 218
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V GEVIASTFDEP RHVQVAEMV+EKAKRLVE KKDV+I+LDSITRLARAYNTV+P+S
Sbjct: 219 TVIGEVIASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVIMLDSITRLARAYNTVVPSS 278
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+LTGGVDSNAL++PKRFFG ARNIEEGGS+TI+A+ALI+TGS+MDD+I+EEFKGTGNM
Sbjct: 279 GKILTGGVDSNALEKPKRFFGVARNIEEGGSVTILASALIDTGSKMDDIIFEEFKGTGNM 338
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E HL+R+LAEKRV+PAIN+ +SGTRRE+LL ++++Q++W+LRK+L+S+
Sbjct: 339 EAHLDRKLAEKRVFPAINIRRSGTRREDLLCSEEEIQRMWILRKILHSM 387
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 162/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
+ V ++ R +KQ+++FAI KK+ K GE I+G+G L+VL +GFGFLRS S+Y DIY
Sbjct: 21 MNVENILRSKKQDIIFAILKKQAKGGEDIYGEGVLDVLQEGFGFLRSSDSSYQPGPSDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL G G+IR PK+GERYFALLK+ K+N
Sbjct: 81 VSPSQIRRFNLRKGDSIYGKIRPPKDGERYFALLKVNKINFDRIETVKQKILFENLTPLF 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
V+ PK+GK++++Q+IA++I N E
Sbjct: 141 PTYRLIMDGSTDDLTARILDLVAPIGKGQRGLIVSPPKAGKTMMMQNIANSIVRNSPECY 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+I +LIDERPEEVTEM R+V GEVIASTFDEP
Sbjct: 201 LIFLLIDERPEEVTEMSRTVIGEVIASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVIM 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGK+LTGGVDSNAL++PKRFFG AR
Sbjct: 261 LDSITRLARAYNTVVPSSGKILTGGVDSNALEKPKRFFGVAR 302
>gi|220921012|ref|YP_002496313.1| transcription termination factor Rho [Methylobacterium nodulans ORS
2060]
gi|219945618|gb|ACL56010.1| transcription termination factor Rho [Methylobacterium nodulans ORS
2060]
Length = 436
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 292/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G++EVL DGFGFLRS SNY+ DDIY+SP+QIRRF L TGD V+G IR PK+GE
Sbjct: 67 IIGAGTVEVLQDGFGFLRSSDSNYLPGPDDIYVSPTQIRRFGLRTGDTVDGPIRGPKDGE 126
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E P+ K++ FDNLTPL P + LE + ++++ + R+ID+++PI
Sbjct: 127 RYFALLKVNTINFENPDKIKHKVHFDNLTPLFPTQRFKLELSEPTRKDYSPRVIDIVSPI 186
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 187 GKGQRALIVAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMQRSVKGEVI 246
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 247 ASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 306
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 307 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 366
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR +PAI++ +SGTR+EELL+ D L+K +VLR++L + +T
Sbjct: 367 VADKRTFPAIDITRSGTRKEELLVPPDTLKKTYVLRRILNPMGVTD 412
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+MQRSV+GEVIASTFDEPA
Sbjct: 195 VAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPA 254
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 255 TRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 314
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 315 PKRFFGAAR 323
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 77/118 (65%), Gaps = 5/118 (4%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++EV + +RKQELMFAI K+ I G G++EVL DGFGFLRS SNY+ DDI
Sbjct: 38 EVEVENASTMRKQELMFAILKQLAAKDVEIIGAGTVEVLQDGFGFLRSSDSNYLPGPDDI 97
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
Y+SP+QIRRF L TG G IR PK+GERYFALLK+ +N +P ++H H
Sbjct: 98 YVSPTQIRRFGLRTGDTVDGPIRGPKDGERYFALLKVNTINFENPDK-----IKHKVH 150
>gi|148260229|ref|YP_001234356.1| transcription termination factor Rho [Acidiphilium cryptum JF-5]
gi|326403415|ref|YP_004283496.1| transcription termination factor Rho [Acidiphilium multivorum
AIU301]
gi|338991937|ref|ZP_08634726.1| Rho [Acidiphilium sp. PM]
gi|146401910|gb|ABQ30437.1| transcription termination factor Rho [Acidiphilium cryptum JF-5]
gi|325050276|dbj|BAJ80614.1| transcription termination factor Rho [Acidiphilium multivorum
AIU301]
gi|338205146|gb|EGO93493.1| Rho [Acidiphilium sp. PM]
Length = 424
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/349 (67%), Positives = 290/349 (83%), Gaps = 10/349 (2%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
+ I GDG+LE LPDGFGFLRS SNY+ DDIY+SP+QIRRF L TGD V GEIR PK
Sbjct: 47 QAIHGDGTLETLPDGFGFLRSPQSNYLPGPDDIYVSPAQIRRFGLRTGDTVAGEIRAPKE 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIES--------KENIT 117
GERYF+L K+ +N E P+ ++R FDNLTPL+P + L +E IE +++ T
Sbjct: 107 GERYFSLQKVDTINFEAPDAVRHRINFDNLTPLYPNQRLQME--IEDAPPPPKGQQKDYT 164
Query: 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177
R++DLIAPIGKGQR L+VA P++GK+++LQ IA +I+ NH EA +IV+LIDERPEEVT+
Sbjct: 165 ARVMDLIAPIGKGQRALIVAPPRTGKTVMLQSIATSISANHPEAFLIVLLIDERPEEVTD 224
Query: 178 MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVI 237
M R+V+GEV+ASTFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAYN V+
Sbjct: 225 MARTVKGEVVASTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNAVV 284
Query: 238 PASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGT 297
P+SGKVLTGGVD+NALQ+PKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGT
Sbjct: 285 PSSGKVLTGGVDANALQKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGT 344
Query: 298 GNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
GN E+ L+R+L++KR +PAI++ KSGTR+EELL++ L K+WVLR++L
Sbjct: 345 GNSELILDRKLSDKRTFPAIDITKSGTRKEELLVERATLSKMWVLRRIL 393
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH EA +IV+LIDERPEEVT+M R+V+GEV+ASTFDEPA
Sbjct: 183 VAPPRTGKTVMLQSIATSISANHPEAFLIVLLIDERPEEVTDMARTVKGEVVASTFDEPA 242
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NALQ+
Sbjct: 243 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNAVVPSSGKVLTGGVDANALQK 302
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 303 PKRFFGAAR 311
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 79/116 (68%), Gaps = 4/116 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE +L+V + LRKQ++MFAI K + + I GDG+LE LPDGFGFLRS S
Sbjct: 15 LSLAE----ELQVENASSLRKQDMMFAILKAYAENDQAIHGDGTLETLPDGFGFLRSPQS 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
NY+ DDIY+SP+QIRRF L TG GEIR PK GERYF+L K+ +N +P +
Sbjct: 71 NYLPGPDDIYVSPAQIRRFGLRTGDTVAGEIRAPKEGERYFSLQKVDTINFEAPDA 126
>gi|395780498|ref|ZP_10460960.1| transcription termination factor Rho [Bartonella washoensis
085-0475]
gi|423711906|ref|ZP_17686211.1| transcription termination factor Rho [Bartonella washoensis
Sb944nv]
gi|395412754|gb|EJF79234.1| transcription termination factor Rho [Bartonella washoensis
Sb944nv]
gi|395418844|gb|EJF85161.1| transcription termination factor Rho [Bartonella washoensis
085-0475]
Length = 421
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 293/345 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTVEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N E PE + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEDPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVT 396
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLASQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPAQIQSFSLKTGDTVEGPIRSPKEGERYFALLKINTINFEDPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|296114331|ref|ZP_06832985.1| transcription termination factor Rho [Gluconacetobacter hansenii
ATCC 23769]
gi|295979092|gb|EFG85816.1| transcription termination factor Rho [Gluconacetobacter hansenii
ATCC 23769]
Length = 433
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/369 (63%), Positives = 294/369 (79%), Gaps = 16/369 (4%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
+ I+GDG+LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR P++
Sbjct: 47 QAIYGDGTLEILSDGFGFLRSPEANYLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRD 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE---------------RNI 110
GERYFALLK+ +N E PE + R FDNLTPL+P++ L +E +
Sbjct: 107 GERYFALLKVDTINFEPPEAVRQRINFDNLTPLYPERRLQMEVENTAVGPAEGSAKGKGK 166
Query: 111 ESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170
+ T R+IDL++PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+LIDE
Sbjct: 167 GPARDFTPRVIDLVSPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDE 226
Query: 171 RPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230
RPEEVT+M RSVRGEV++STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLA
Sbjct: 227 RPEEVTDMARSVRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLA 286
Query: 231 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVI 290
RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI
Sbjct: 287 RAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVI 346
Query: 291 YEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL- 349
+EEFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 347 FEEFKGTGNSELILDRKLADKRTFPAIDITKSGTRKEELLVDRADLSKMWVLRRILAPMG 406
Query: 350 TMTSFTVSL 358
TM + L
Sbjct: 407 TMGAMDFQL 415
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV++STFDEPA
Sbjct: 192 VAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVSSTFDEPA 251
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 252 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 311
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 312 PKRFFGAAR 320
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 76/106 (71%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + + LRKQELMF I K + + I+GDG+LE+L DGFGFLRS +NY+ DDIY
Sbjct: 21 LNIENASSLRKQELMFTILKTLAENDQAIYGDGTLEILSDGFGFLRSPEANYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+SPSQ+RRF L TG +G+IR P++GERYFALLK+ +N P++
Sbjct: 81 ISPSQVRRFGLRTGDTVEGQIRAPRDGERYFALLKVDTINFEPPEA 126
>gi|197121142|ref|YP_002133093.1| transcription termination factor Rho [Anaeromyxobacter sp. K]
gi|220915843|ref|YP_002491147.1| transcription termination factor Rho [Anaeromyxobacter dehalogenans
2CP-1]
gi|196170991|gb|ACG71964.1| transcription termination factor Rho [Anaeromyxobacter sp. K]
gi|219953697|gb|ACL64081.1| transcription termination factor Rho [Anaeromyxobacter dehalogenans
2CP-1]
Length = 417
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 287/339 (84%), Gaps = 3/339 (0%)
Query: 10 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERY 69
G+G+LEVLPDGFGFLRS +Y+ DDIY+SPSQIRRFNL TGD V G +R PK GERY
Sbjct: 49 GEGTLEVLPDGFGFLRSPDFSYLPGPDDIYVSPSQIRRFNLRTGDTVRGTVRQPKEGERY 108
Query: 70 FALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGK 129
FALLK+ +NGE PE ++ + LFDNLTPL+P + L LE + +T R++DL APIGK
Sbjct: 109 FALLKVDTINGEPPEENQAKVLFDNLTPLYPTQRLTLEHD---PAEMTTRVVDLFAPIGK 165
Query: 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIAS 189
GQR L+V+ P++GK+++LQ+IAHA+TTNH E +IV+LIDERPEEVT+M+R+VRGEV+AS
Sbjct: 166 GQRCLIVSPPRAGKTVLLQNIAHAVTTNHPECTLIVLLIDERPEEVTDMERTVRGEVVAS 225
Query: 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVD 249
TFDEPA RHVQVAEMV+EKA+RLVE KKDV+ILLDSITRLARAYN+ +P SGK+L+GGVD
Sbjct: 226 TFDEPATRHVQVAEMVIEKARRLVEHKKDVVILLDSITRLARAYNSTVPPSGKILSGGVD 285
Query: 250 SNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLA 309
SNAL +PKRFFGAARNIEEGGSLTII TAL++TGSRMD+VI+EEFKGTGN E+ L+R+L
Sbjct: 286 SNALHKPKRFFGAARNIEEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLDRKLM 345
Query: 310 EKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348
EKR++P +++ KSGTR+EELL+ D L KI++LR+ + +
Sbjct: 346 EKRIFPCMDIGKSGTRKEELLLAADWLSKIYILRQTILN 384
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/289 (44%), Positives = 167/289 (57%), Gaps = 86/289 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGER------IFGDGSLEVLPDGFGFLRSQGSNYM 441
DL V + L+KQ+L+FAI + ++K E + G+G+LEVLPDGFGFLRS +Y+
Sbjct: 12 DLNVEAAGALKKQDLIFAILQAQSKAAEAAKEEMEVGGEGTLEVLPDGFGFLRSPDFSYL 71
Query: 442 ASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------- 488
DDIY+SPSQIRRFNL TG +G +R PK GERYFALLK+ +N
Sbjct: 72 PGPDDIYVSPSQIRRFNLRTGDTVRGTVRQPKEGERYFALLKVDTINGEPPEENQAKVLF 131
Query: 489 ----------------------------------------VASPKSGKSIILQHIAHAIT 508
V+ P++GK+++LQ+IAHA+T
Sbjct: 132 DNLTPLYPTQRLTLEHDPAEMTTRVVDLFAPIGKGQRCLIVSPPRAGKTVLLQNIAHAVT 191
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------- 548
TNH E +IV+LIDERPEEVT+M+R+VRGEV+ASTFDEPA
Sbjct: 192 TNHPECTLIVLLIDERPEEVTDMERTVRGEVVASTFDEPATRHVQVAEMVIEKARRLVEH 251
Query: 549 -------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN+ +P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 252 KKDVVILLDSITRLARAYNSTVPPSGKILSGGVDSNALHKPKRFFGAAR 300
>gi|406892089|gb|EKD37536.1| hypothetical protein ACD_75C01095G0005 [uncultured bacterium]
Length = 416
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/342 (67%), Positives = 287/342 (83%), Gaps = 4/342 (1%)
Query: 10 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERY 69
G G LE+LPDGFGFLR+ NY+ DDIY+SPSQIRR NL TGD +EG +R PK GERY
Sbjct: 51 GSGVLEILPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRLNLRTGDTIEGLVRAPKEGERY 110
Query: 70 FALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGK 129
FALLK+ VN + PE +K +TLF NLTPLHP + LE +N++ RI+D+ APIGK
Sbjct: 111 FALLKVDSVNFDPPEAAKQKTLFGNLTPLHPNEAFSLEWQ---PDNMSMRIMDMFAPIGK 167
Query: 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-GEVIA 188
GQRGL+VA P++GK++++Q IA++I NH E +IV+LIDERPEEVTEM RSV+ EV++
Sbjct: 168 GQRGLIVAPPRTGKTVLMQKIANSIVRNHKEVYLIVLLIDERPEEVTEMTRSVKTAEVVS 227
Query: 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGV 248
STFDEP RH+QVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV PASGK+L+GGV
Sbjct: 228 STFDEPPQRHIQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKILSGGV 287
Query: 249 DSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRL 308
++NAL RPKRFFGAARNIEEGGSLTI+ATALIETGSRMD+VI+EEFKGTGNME+ L+R++
Sbjct: 288 EANALHRPKRFFGAARNIEEGGSLTILATALIETGSRMDEVIFEEFKGTGNMELVLDRKM 347
Query: 309 AEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
A+KR++PAI+L +SGTR+E+LLI+ D L +IW+LRKLL S+
Sbjct: 348 ADKRIFPAIDLKRSGTRKEDLLIKADALNRIWILRKLLNSMN 389
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/283 (44%), Positives = 157/283 (55%), Gaps = 81/283 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L+V LRKQEL+FAI K ++ ++ G G LE+LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LKVEGYSALRKQELIFAILKAQSDKDGKMRGSGVLEILPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRR NL TG +G +R PK GERYFALLK+ VN
Sbjct: 81 VSPSQIRRLNLRTGDTIEGLVRAPKEGERYFALLKVDSVNFDPPEAAKQKTLFGNLTPLH 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q IA++I NH E
Sbjct: 141 PNEAFSLEWQPDNMSMRIMDMFAPIGKGQRGLIVAPPRTGKTVLMQKIANSIVRNHKEVY 200
Query: 516 MIVMLIDERPEEVTEMQRSVR-GEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVTEM RSV+ EV++STFDEP
Sbjct: 201 LIVLLIDERPEEVTEMTRSVKTAEVVSSTFDEPPQRHIQVAEMVIEKAKRLVEHKKDVVI 260
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGV++NAL RPKRFFGAAR
Sbjct: 261 LLDSITRLARAYNTVTPASGKILSGGVEANALHRPKRFFGAAR 303
>gi|414342057|ref|YP_006983578.1| hypothetical protein B932_1060 [Gluconobacter oxydans H24]
gi|411027392|gb|AFW00647.1| Rho [Gluconobacter oxydans H24]
gi|453330081|dbj|GAC87804.1| transcription termination factor Rho [Gluconobacter thailandicus
NBRC 3255]
Length = 433
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/357 (64%), Positives = 292/357 (81%), Gaps = 15/357 (4%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G+LE+LPDGFGFLRS +NY+ DDIY+SP+Q+RRF L GD VEG+IR P++GE
Sbjct: 49 IYGEGTLEILPDGFGFLRSPEANYLPGPDDIYISPTQVRRFGLRPGDTVEGQIRAPRDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE---------------RNIES 112
RYFALLK+ +N E P++ + R FDNLTPL+P++ L +E + +
Sbjct: 109 RYFALLKVNTINFEDPDVVRTRINFDNLTPLYPERRLKMEVEQSEPAVSETSPRSKGKKD 168
Query: 113 KENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ + T R+IDL+ PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+LIDERP
Sbjct: 169 QRDYTPRVIDLVTPIGMGQRALIVAPPRTGKTVMLQSIAASISANHPEVFLIVLLIDERP 228
Query: 173 EEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232
EEVT+M RSVRGEV++STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARA
Sbjct: 229 EEVTDMARSVRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARA 288
Query: 233 YNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYE 292
YNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+E
Sbjct: 289 YNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFE 348
Query: 293 EFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ +L K+WVLR++L +
Sbjct: 349 EFKGTGNAELILDRKLADKRTFPAIDITKSGTRKEELLVDRAELSKMWVLRRILAPM 405
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV++STFDEPA
Sbjct: 192 VAPPRTGKTVMLQSIAASISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVSSTFDEPA 251
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 252 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 311
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 312 PKRFFGAAR 320
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 78/105 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ +V +RKQ++MFAI K + + I+G+G+LE+LPDGFGFLRS +NY+ DDI
Sbjct: 20 ELEIENVSSMRKQDIMFAILKTLAERDQAIYGEGTLEILPDGFGFLRSPEANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
Y+SP+Q+RRF L G +G+IR P++GERYFALLK+ +N P
Sbjct: 80 YISPTQVRRFGLRPGDTVEGQIRAPRDGERYFALLKVNTINFEDP 124
>gi|418063886|ref|ZP_12701493.1| transcription termination factor Rho [Methylobacterium extorquens
DSM 13060]
gi|373556353|gb|EHP82879.1| transcription termination factor Rho [Methylobacterium extorquens
DSM 13060]
Length = 487
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 291/345 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G++EVL DGFGFLRS SNY+ DDIY+SP+QIRRF L TGD VEG IR PK+GE
Sbjct: 118 IIGAGTVEVLQDGFGFLRSHDSNYLPGPDDIYISPTQIRRFGLRTGDTVEGPIRGPKDGE 177
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE K++ FDNLTPL P + LE + K++ + RIID+++PI
Sbjct: 178 RYFALLKVNTINFENPEKIKHKVHFDNLTPLFPTQRFKLELDNPPKKDFSPRIIDIVSPI 237
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 238 GKGQRALIVAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMIRSVKGEVI 297
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 298 ASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 357
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 358 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 417
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+++KR++PAI++ +SGTR+EELL+ D L+K +VLR++L + +T
Sbjct: 418 VSDKRIFPAIDITRSGTRKEELLVPPDALKKTYVLRRILNPMGVT 462
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVIASTFDEPA
Sbjct: 246 VAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMIRSVKGEVIASTFDEPA 305
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 306 TRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 365
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 366 PKRFFGAAR 374
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 5/115 (4%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQELMFAI K+ I G G++EVL DGFGFLRS SNY+ DDIY+S
Sbjct: 92 VENASTMRKQELMFAILKQLAANETEIIGAGTVEVLQDGFGFLRSHDSNYLPGPDDIYIS 151
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
P+QIRRF L TG +G IR PK+GERYFALLK+ +N +P+ ++H H
Sbjct: 152 PTQIRRFGLRTGDTVEGPIRGPKDGERYFALLKVNTINFENPEK-----IKHKVH 201
>gi|85375430|ref|YP_459492.1| transcription termination factor Rho [Erythrobacter litoralis
HTCC2594]
gi|84788513|gb|ABC64695.1| transcription termination factor Rho [Erythrobacter litoralis
HTCC2594]
Length = 421
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/343 (66%), Positives = 293/343 (85%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
+I G G++EVL DGFGFLRS +NY+A DDIY+SP+QIR++ L TGD VEGEIR P G
Sbjct: 51 QIMGIGTIEVLQDGFGFLRSPEANYLAGPDDIYVSPNQIRKWGLRTGDTVEGEIRAPNEG 110
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ERYFAL +K VN ++P+ + RT FDNLTPL+P + L L+ + ++ + R+ID+I+P
Sbjct: 111 ERYFALTSLKTVNFDEPDAVRRRTNFDNLTPLYPDQKLSLDTLDPTVKDKSARVIDIISP 170
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
GKGQR L+VA P++GK+++LQ+IA AIT NH E ++V+L+DERPEEVT+MQRSV+GEV
Sbjct: 171 QGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEV 230
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRL RAYNTV+P+SGKVLTG
Sbjct: 231 ISSTFDEPANRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLGRAYNTVVPSSGKVLTG 290
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R
Sbjct: 291 GVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDR 350
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++A+KR++PA+++ KSGTR+EELL++ DKL K+WVLR++L +
Sbjct: 351 KVADKRIFPALDVGKSGTRKEELLVEKDKLSKMWVLRRILMQM 393
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 147/289 (50%), Gaps = 86/289 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGE---RIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
+L V +R+Q+L+F+I ++ + E +I G G++EVL DGFGFLRS +NY+A
Sbjct: 20 ELGVEGASTMRRQDLLFSILRELAEDEEYEEQIMGIGTIEVLQDGFGFLRSPEANYLAGP 79
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS---------- 494
DDIY+SP+QIR++ L TG +GEIR P GERYFAL +K VN P +
Sbjct: 80 DDIYVSPNQIRKWGLRTGDTVEGEIRAPNEGERYFALTSLKTVNFDEPDAVRRRTNFDNL 139
Query: 495 -----GKSIILQHIAHAITTNHSEAIMIV----------------------------MLI 521
+ + L + + + I I+ +
Sbjct: 140 TPLYPDQKLSLDTLDPTVKDKSARVIDIISPQGKGQRALIVAPPRTGKTVLLQNIAKAIT 199
Query: 522 DERPE-------------EVTEMQRSVRGEVIASTFDEPA-------------------- 548
D PE EVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 DNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPANRHVQVAEMVIEKAKRLVEH 259
Query: 549 -------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 KHDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|410944973|ref|ZP_11376714.1| transcription termination factor Rho [Gluconobacter frateurii NBRC
101659]
Length = 433
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/357 (64%), Positives = 292/357 (81%), Gaps = 15/357 (4%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G+LE+LPDGFGFLRS +NY+ DDIY+SP+Q+RRF L GD VEG+IR P++GE
Sbjct: 49 IYGEGTLEILPDGFGFLRSPEANYLPGPDDIYISPTQVRRFGLRPGDTVEGQIRAPRDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE---------------RNIES 112
RYFALLK+ +N E P++ + R FDNLTPL+P++ L +E + +
Sbjct: 109 RYFALLKVNTINFEDPDVVRTRINFDNLTPLYPERRLKMEVEQSEPAVSETSPRSKGKKD 168
Query: 113 KENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ + T R+IDL+ PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+LIDERP
Sbjct: 169 QRDYTPRVIDLVTPIGMGQRALIVAPPRTGKTVMLQSIAASISANHPEVFLIVLLIDERP 228
Query: 173 EEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232
EEVT+M RSVRGEV++STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARA
Sbjct: 229 EEVTDMARSVRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARA 288
Query: 233 YNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYE 292
YNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+E
Sbjct: 289 YNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFE 348
Query: 293 EFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ +L K+WVLR++L +
Sbjct: 349 EFKGTGNAELILDRKLADKRTFPAIDITKSGTRKEELLVDRAELSKMWVLRRILAPM 405
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV++STFDEPA
Sbjct: 192 VAPPRTGKTVMLQSIAASISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVSSTFDEPA 251
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 252 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 311
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 312 PKRFFGAAR 320
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 78/105 (74%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ +V +RKQ++MFAI K + + I+G+G+LE+LPDGFGFLRS +NY+ DDI
Sbjct: 20 ELEIENVSSMRKQDIMFAILKTLAERDQAIYGEGTLEILPDGFGFLRSPEANYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
Y+SP+Q+RRF L G +G+IR P++GERYFALLK+ +N P
Sbjct: 80 YISPTQVRRFGLRPGDTVEGQIRAPRDGERYFALLKVNTINFEDP 124
>gi|258541407|ref|YP_003186840.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-01]
gi|384041328|ref|YP_005480072.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-12]
gi|384049843|ref|YP_005476906.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-03]
gi|384052953|ref|YP_005486047.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-07]
gi|384056185|ref|YP_005488852.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-22]
gi|384058826|ref|YP_005497954.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-26]
gi|384062120|ref|YP_005482762.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-32]
gi|384118196|ref|YP_005500820.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-01-42C]
gi|421849378|ref|ZP_16282359.1| transcription termination factor Rho [Acetobacter pasteurianus NBRC
101655]
gi|421853041|ref|ZP_16285722.1| transcription termination factor Rho [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|256632485|dbj|BAH98460.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-01]
gi|256635542|dbj|BAI01511.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-03]
gi|256638597|dbj|BAI04559.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-07]
gi|256641651|dbj|BAI07606.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-22]
gi|256644706|dbj|BAI10654.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-26]
gi|256647761|dbj|BAI13702.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-32]
gi|256650814|dbj|BAI16748.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256653805|dbj|BAI19732.1| transcription termination factor Rho [Acetobacter pasteurianus IFO
3283-12]
gi|371459852|dbj|GAB27562.1| transcription termination factor Rho [Acetobacter pasteurianus NBRC
101655]
gi|371478751|dbj|GAB30925.1| transcription termination factor Rho [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 432
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/356 (64%), Positives = 294/356 (82%), Gaps = 14/356 (3%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G+LE++ DGFG+LRS SNY+ DDIY+SP+Q+RRF L TGD VEG+IR P++GE
Sbjct: 49 IYGEGTLEIMHDGFGYLRSPESNYLPGPDDIYISPTQVRRFGLRTGDTVEGQIRAPRDGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIES--------------K 113
RYF++LKI +N E P+ ++R FDNLTPL+P++ L +E ++ +
Sbjct: 109 RYFSMLKINTINFEPPDAVRHRINFDNLTPLYPERRLQMEVESQATAPEPKAEKGKKGAQ 168
Query: 114 ENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPE 173
++ T R+IDL++PIG GQR L+VA P+SGK+++LQ IA +I+ NH E +IV+LIDERPE
Sbjct: 169 KDFTPRVIDLVSPIGMGQRALIVAPPRSGKTVMLQSIASSISANHPEVFLIVLLIDERPE 228
Query: 174 EVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY 233
EVT+M RSVRGEVIASTFDEPA+RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAY
Sbjct: 229 EVTDMARSVRGEVIASTFDEPAHRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAY 288
Query: 234 NTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEE 293
NTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EE
Sbjct: 289 NTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEE 348
Query: 294 FKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
FKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 349 FKGTGNSELVLDRKLADKRTFPAIDITKSGTRKEELLVDRATLSKMWVLRRILAPM 404
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P+SGK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEVIASTFDEPA
Sbjct: 191 VAPPRSGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVIASTFDEPA 250
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 251 HRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 310
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 311 PKRFFGAAR 319
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 76/107 (71%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL + + LRKQ++MFAI K + I+G+G+LE++ DGFG+LRS SNY+ DDI
Sbjct: 20 DLNIENASSLRKQDMMFAILKALADNDQAIYGEGTLEIMHDGFGYLRSPESNYLPGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+SP+Q+RRF L TG +G+IR P++GERYF++LKI +N P +
Sbjct: 80 YISPTQVRRFGLRTGDTVEGQIRAPRDGERYFSMLKINTINFEPPDA 126
>gi|402575162|ref|YP_006608054.1| transcription termination factor Rho [Candidatus Portiera
aleyrodidarum BT-B-HRs]
gi|401871966|gb|AFQ24134.1| transcription termination factor Rho [Candidatus Portiera
aleyrodidarum BT-B-HRs]
Length = 416
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/349 (65%), Positives = 297/349 (85%), Gaps = 3/349 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+G+G L+VL +GFGFLRS S+Y DIY+SPSQIRRFNL GD + G+I
Sbjct: 42 QAKGGEDIYGEGVLDVLQEGFGFLRSSDSSYQPGPSDIYVSPSQIRRFNLRKGDSIYGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ K+N ++ E K + LF+NLTPL P L+++ S +++T RI
Sbjct: 102 RPPKDGERYFALLKVNKINFDRIETVKQKILFENLTPLFPTYRLIMD---GSTDDLTARI 158
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DL+APIGKGQRGL+V+ PK+GK++++Q+IA++I N E +I +LIDERPEEVTEM R
Sbjct: 159 LDLVAPIGKGQRGLIVSPPKAGKTMMMQNIANSIVRNSPECYLIFLLIDERPEEVTEMSR 218
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V GEVIASTFDEP RHVQVAEMV+EKAKRLVE KKDV+I+LDSITRLARAYNTV+P+S
Sbjct: 219 TVIGEVIASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVIMLDSITRLARAYNTVVPSS 278
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+LTGGVDSNAL++PKRFFG ARNIEEGGS+TI+A+ALI+TGS+MDD+I+EEFKGTGNM
Sbjct: 279 GKILTGGVDSNALEKPKRFFGVARNIEEGGSVTILASALIDTGSKMDDIIFEEFKGTGNM 338
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E HL+R+LAEKRV+PAIN+ +SGTRRE+LL ++++Q++W+LRK+L+S+
Sbjct: 339 EAHLDRKLAEKRVFPAINIRRSGTRREDLLCSEEEIQRMWILRKILHSM 387
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 162/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
+ V ++ R +KQ+++FAI KK+ K GE I+G+G L+VL +GFGFLRS S+Y DIY
Sbjct: 21 MNVENILRSKKQDIIFAILKKQAKGGEDIYGEGVLDVLQEGFGFLRSSDSSYQPGPSDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL G G+IR PK+GERYFALLK+ K+N
Sbjct: 81 VSPSQIRRFNLRKGDSIYGKIRPPKDGERYFALLKVNKINFDRIETVKQKILFENLTPLF 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
V+ PK+GK++++Q+IA++I N E
Sbjct: 141 PTYRLIMDGSTDDLTARILDLVAPIGKGQRGLIVSPPKAGKTMMMQNIANSIVRNSPECY 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+I +LIDERPEEVTEM R+V GEVIASTFDEP
Sbjct: 201 LIFLLIDERPEEVTEMSRTVIGEVIASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVIM 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGK+LTGGVDSNAL++PKRFFG AR
Sbjct: 261 LDSITRLARAYNTVVPSSGKILTGGVDSNALEKPKRFFGVAR 302
>gi|320354567|ref|YP_004195906.1| transcription termination factor Rho [Desulfobulbus propionicus DSM
2032]
gi|320123069|gb|ADW18615.1| transcription termination factor Rho [Desulfobulbus propionicus DSM
2032]
Length = 415
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 226/344 (65%), Positives = 292/344 (84%), Gaps = 3/344 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G G LE+L DGFGFLR+ NY+ DDIY+SPSQIRR NL TGD VEGE+R PK+
Sbjct: 48 KLRGSGVLEILQDGFGFLRAPDYNYLPGPDDIYVSPSQIRRLNLRTGDSVEGEVRAPKDN 107
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ERYFALLK+ +N E PE +KN+T F NLTPLHP KL+ LE + +N++ R++++ AP
Sbjct: 108 ERYFALLKVDTINYELPEAAKNKTAFINLTPLHPDKLINLE---TTPDNLSMRVLNITAP 164
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
+GKGQRGL+VA P++GK++++Q IA++I TNH E I+IV+LIDERPEEVT+M+RSV EV
Sbjct: 165 LGKGQRGLIVAPPRTGKTVLMQKIANSIVTNHKEIILIVLLIDERPEEVTDMKRSVDAEV 224
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEP RH+QVAEMV++KA+RLVE KKDV+ILLDSITRLARAYNTV PASGK+L+G
Sbjct: 225 VSSTFDEPPQRHIQVAEMVIQKAQRLVEHKKDVVILLDSITRLARAYNTVTPASGKILSG 284
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GV++NAL RPKRFFGAARN+EEGGSLTI+ATALI+TGSRMD+VI+EEFKGTGNME+ L+R
Sbjct: 285 GVEANALHRPKRFFGAARNVEEGGSLTILATALIDTGSRMDEVIFEEFKGTGNMEIVLDR 344
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
++A +R+YPAI++ KSGTR+E+LL+ + L +IW+LRKLL S+
Sbjct: 345 KMANRRIYPAIDIQKSGTRKEDLLLPPEDLNRIWILRKLLSSMN 388
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + + KQEL+FAI K++ ++ G G LE+L DGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGYSNMTKQELIFAILKEQADEDGKLRGSGVLEILQDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRR NL TG +GE+R PK+ ERYFALLK+ +N
Sbjct: 81 VSPSQIRRLNLRTGDSVEGEVRAPKDNERYFALLKVDTINYELPEAAKNKTAFINLTPLH 140
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK++++Q IA++I TNH E I
Sbjct: 141 PDKLINLETTPDNLSMRVLNITAPLGKGQRGLIVAPPRTGKTVLMQKIANSIVTNHKEII 200
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M+RSV EV++STFDEP
Sbjct: 201 LIVLLIDERPEEVTDMKRSVDAEVVSSTFDEPPQRHIQVAEMVIQKAQRLVEHKKDVVIL 260
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGV++NAL RPKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVTPASGKILSGGVEANALHRPKRFFGAAR 302
>gi|149185262|ref|ZP_01863579.1| transcription termination factor Rho [Erythrobacter sp. SD-21]
gi|148831373|gb|EDL49807.1| transcription termination factor Rho [Erythrobacter sp. SD-21]
Length = 421
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/343 (66%), Positives = 294/343 (85%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
+I G G++EVL DGFGFLRS +NY+A DDIY+SP+Q+R++ L TGD VEGEIR PK G
Sbjct: 51 KIMGIGTIEVLQDGFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPKEG 110
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ERYFAL K+ KVN + P+ ++RT FDNLTPL+P + L L+ + ++ + R+ID+I+P
Sbjct: 111 ERYFALTKLYKVNFDDPDAVRHRTNFDNLTPLYPDEKLSLDTLDPTVKDKSARVIDIISP 170
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
GKGQR L+VA P++GK+++LQ+IA AIT NH E ++V+L+DERPEEVT+MQRSV+GEV
Sbjct: 171 QGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEV 230
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRL RAYNTV+P+SGKVLTG
Sbjct: 231 ISSTFDEPANRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLGRAYNTVVPSSGKVLTG 290
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R
Sbjct: 291 GVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDR 350
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++A+KR++PA+++ KSGTR+EELL+ D+L K+WVLR++L +
Sbjct: 351 KVADKRIFPALDVGKSGTRKEELLVGKDQLSKMWVLRRILMQM 393
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 148/289 (51%), Gaps = 86/289 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGE---RIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
+L V +R+Q+LMF I ++ + E +I G G++EVL DGFGFLRS +NY+A
Sbjct: 20 ELGVEGASTMRRQDLMFCILRELAEDEEYEEKIMGIGTIEVLQDGFGFLRSPEANYLAGP 79
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS---------- 494
DDIY+SP+Q+R++ L TG +GEIR PK GERYFAL K+ KVN P +
Sbjct: 80 DDIYVSPNQVRKWGLRTGDTVEGEIRAPKEGERYFALTKLYKVNFDDPDAVRHRTNFDNL 139
Query: 495 -----GKSIILQHIAHAITTNHSEAIMIV----------------------------MLI 521
+ + L + + + I I+ +
Sbjct: 140 TPLYPDEKLSLDTLDPTVKDKSARVIDIISPQGKGQRALIVAPPRTGKTVLLQNIAKAIT 199
Query: 522 DERPE-------------EVTEMQRSVRGEVIASTFDEPA-------------------- 548
D PE EVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 DNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPANRHVQVAEMVIEKAKRLVEH 259
Query: 549 -------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 KHDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|395788132|ref|ZP_10467708.1| transcription termination factor Rho [Bartonella birtlesii LL-WM9]
gi|395791674|ref|ZP_10471130.1| transcription termination factor Rho [Bartonella alsatica IBS 382]
gi|395407977|gb|EJF74597.1| transcription termination factor Rho [Bartonella alsatica IBS 382]
gi|395409914|gb|EJF76499.1| transcription termination factor Rho [Bartonella birtlesii LL-WM9]
Length = 421
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 293/345 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTVEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N E PE + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEDPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVT 396
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLASQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPAQIQSFSLKTGDTVEGPIRSPKEGERYFALLKINTINFEDPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEHGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|407681518|ref|YP_006796694.1| transcription termination factor Rho [Candidatus Portiera
aleyrodidarum BT-QVLC]
gi|407681799|ref|YP_006796974.1| Transcription termination factor Rho [Candidatus Portiera
aleyrodidarum BT-B-HRs]
gi|407243129|gb|AFT80530.1| Transcription termination factor Rho [Candidatus Portiera
aleyrodidarum BT-QVLC]
gi|407243410|gb|AFT80810.1| Transcription termination factor Rho [Candidatus Portiera
aleyrodidarum BT-B-HRs]
Length = 396
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/349 (65%), Positives = 297/349 (85%), Gaps = 3/349 (0%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+G+G L+VL +GFGFLRS S+Y DIY+SPSQIRRFNL GD + G+I
Sbjct: 22 QAKGGEDIYGEGVLDVLQEGFGFLRSSDSSYQPGPSDIYVSPSQIRRFNLRKGDSIYGKI 81
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ K+N ++ E K + LF+NLTPL P L+++ S +++T RI
Sbjct: 82 RPPKDGERYFALLKVNKINFDRIETVKQKILFENLTPLFPTYRLIMD---GSTDDLTARI 138
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DL+APIGKGQRGL+V+ PK+GK++++Q+IA++I N E +I +LIDERPEEVTEM R
Sbjct: 139 LDLVAPIGKGQRGLIVSPPKAGKTMMMQNIANSIVRNSPECYLIFLLIDERPEEVTEMSR 198
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V GEVIASTFDEP RHVQVAEMV+EKAKRLVE KKDV+I+LDSITRLARAYNTV+P+S
Sbjct: 199 TVIGEVIASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVIMLDSITRLARAYNTVVPSS 258
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+LTGGVDSNAL++PKRFFG ARNIEEGGS+TI+A+ALI+TGS+MDD+I+EEFKGTGNM
Sbjct: 259 GKILTGGVDSNALEKPKRFFGVARNIEEGGSVTILASALIDTGSKMDDIIFEEFKGTGNM 318
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E HL+R+LAEKRV+PAIN+ +SGTRRE+LL ++++Q++W+LRK+L+S+
Sbjct: 319 EAHLDRKLAEKRVFPAINIRRSGTRREDLLCSEEEIQRMWILRKILHSM 367
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 162/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
+ V ++ R +KQ+++FAI KK+ K GE I+G+G L+VL +GFGFLRS S+Y DIY
Sbjct: 1 MNVENILRSKKQDIIFAILKKQAKGGEDIYGEGVLDVLQEGFGFLRSSDSSYQPGPSDIY 60
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL G G+IR PK+GERYFALLK+ K+N
Sbjct: 61 VSPSQIRRFNLRKGDSIYGKIRPPKDGERYFALLKVNKINFDRIETVKQKILFENLTPLF 120
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
V+ PK+GK++++Q+IA++I N E
Sbjct: 121 PTYRLIMDGSTDDLTARILDLVAPIGKGQRGLIVSPPKAGKTMMMQNIANSIVRNSPECY 180
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+I +LIDERPEEVTEM R+V GEVIASTFDEP
Sbjct: 181 LIFLLIDERPEEVTEMSRTVIGEVIASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVIM 240
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P+SGK+LTGGVDSNAL++PKRFFG AR
Sbjct: 241 LDSITRLARAYNTVVPSSGKILTGGVDSNALEKPKRFFGVAR 282
>gi|163850990|ref|YP_001639033.1| transcription termination factor Rho [Methylobacterium extorquens
PA1]
gi|163662595|gb|ABY29962.1| transcription termination factor Rho [Methylobacterium extorquens
PA1]
Length = 506
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/345 (66%), Positives = 291/345 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G++EVL DGFGFLRS SNY+ DDIY+SP+QIRRF L TGD VEG IR PK+GE
Sbjct: 137 IIGAGTVEVLQDGFGFLRSHDSNYLPGPDDIYISPTQIRRFGLRTGDTVEGPIRGPKDGE 196
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE K++ FDNLTPL P + LE + K++ + RIID+++PI
Sbjct: 197 RYFALLKVNTINFENPEKIKHKVHFDNLTPLFPTQRFKLELDNPPKKDFSPRIIDIVSPI 256
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 257 GKGQRALIVAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMIRSVKGEVI 316
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 317 ASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 376
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 377 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 436
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+++KR++PAI++ +SGTR+EELL+ D L+K +VLR++L + +T
Sbjct: 437 VSDKRIFPAIDITRSGTRKEELLVPPDALKKTYVLRRILNPMGVT 481
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVIASTFDEPA
Sbjct: 265 VAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMIRSVKGEVIASTFDEPA 324
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 325 TRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 384
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 385 PKRFFGAAR 393
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 5/115 (4%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQELMFAI K+ I G G++EVL DGFGFLRS SNY+ DDIY+S
Sbjct: 111 VENASTMRKQELMFAILKQLAANETEIIGAGTVEVLQDGFGFLRSHDSNYLPGPDDIYIS 170
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
P+QIRRF L TG +G IR PK+GERYFALLK+ +N +P+ ++H H
Sbjct: 171 PTQIRRFGLRTGDTVEGPIRGPKDGERYFALLKVNTINFENPEK-----IKHKVH 220
>gi|395764869|ref|ZP_10445489.1| transcription termination factor Rho [Bartonella sp. DB5-6]
gi|395767578|ref|ZP_10448111.1| transcription termination factor Rho [Bartonella doshiae NCTC
12862]
gi|395789042|ref|ZP_10468572.1| transcription termination factor Rho [Bartonella taylorii 8TBB]
gi|395413686|gb|EJF80148.1| transcription termination factor Rho [Bartonella sp. DB5-6]
gi|395413941|gb|EJF80394.1| transcription termination factor Rho [Bartonella doshiae NCTC
12862]
gi|395431176|gb|EJF97203.1| transcription termination factor Rho [Bartonella taylorii 8TBB]
Length = 421
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 293/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTVEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N E PE + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEDPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVQGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVTD 397
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPAQIQSFSLKTGDTVEGPIRSPKEGERYFALLKINTINFEDPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVQGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|146337364|ref|YP_001202412.1| transcription termination factor Rho [Bradyrhizobium sp. ORS 278]
gi|148251781|ref|YP_001236366.1| transcription termination factor Rho [Bradyrhizobium sp. BTAi1]
gi|365884917|ref|ZP_09423943.1| Transcription termination factor Rho [Bradyrhizobium sp. ORS 375]
gi|365892143|ref|ZP_09430474.1| Transcription termination factor Rho [Bradyrhizobium sp. STM 3809]
gi|146190170|emb|CAL74162.1| Transcription termination factor Rho [Bradyrhizobium sp. ORS 278]
gi|146403954|gb|ABQ32460.1| transcription termination factor Rho [Bradyrhizobium sp. BTAi1]
gi|365286465|emb|CCD96474.1| Transcription termination factor Rho [Bradyrhizobium sp. ORS 375]
gi|365331808|emb|CCE03005.1| Transcription termination factor Rho [Bradyrhizobium sp. STM 3809]
Length = 421
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/342 (66%), Positives = 291/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFRLELEDPTRKDLSPRVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+A+KR +PAI++ +SGTR+EEL+ + L+K++VLR++L +
Sbjct: 352 VADKRTFPAIDIARSGTRKEELITEPQNLKKMYVLRRILNPM 393
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/283 (46%), Positives = 162/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTMRKQELMFAILKQLAIQETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN---------- 488
PSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 86 PSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPD 145
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IAH+IT NH E
Sbjct: 146 ERFRLELEDPTRKDLSPRVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANHPEC 205
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 206 YLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVI 265
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 266 LLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|367475407|ref|ZP_09474869.1| Transcription termination factor Rho [Bradyrhizobium sp. ORS 285]
gi|365272298|emb|CCD87337.1| Transcription termination factor Rho [Bradyrhizobium sp. ORS 285]
Length = 421
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/342 (66%), Positives = 291/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFRLELEDPTRKDLSPRVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+A+KR +PAI++ +SGTR+EEL+ + L+K++VLR++L +
Sbjct: 352 VADKRTFPAIDIARSGTRKEELITEPQNLKKMYVLRRILNPM 393
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/283 (46%), Positives = 162/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTMRKQELMFAILKQLAIQETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN---------- 488
PSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 86 PSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPD 145
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IAH+IT NH E
Sbjct: 146 ERFRLELEDPTRKDLSPRVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANHPEC 205
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 206 YLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVI 265
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 266 LLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|49476319|ref|YP_034360.1| transcription termination factor Rho [Bartonella henselae str.
Houston-1]
gi|49239127|emb|CAF28431.1| Transcription termination factor rho [Bartonella henselae str.
Houston-1]
Length = 421
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 293/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTIEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N E PE + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFENPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVTD 397
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPAQIQSFSLKTGDTIEGPIRSPKEGERYFALLKINTINFENPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|218529817|ref|YP_002420633.1| transcription termination factor Rho [Methylobacterium extorquens
CM4]
gi|240138121|ref|YP_002962593.1| transcription termination factor Rho; polarity suppressor
[Methylobacterium extorquens AM1]
gi|254560683|ref|YP_003067778.1| transcription termination factor Rho; polarity suppressor
[Methylobacterium extorquens DM4]
gi|218522120|gb|ACK82705.1| transcription termination factor Rho [Methylobacterium extorquens
CM4]
gi|240008090|gb|ACS39316.1| transcription termination factor Rho; polarity suppressor
[Methylobacterium extorquens AM1]
gi|254267961|emb|CAX23829.1| transcription termination factor Rho; polarity suppressor
[Methylobacterium extorquens DM4]
Length = 447
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 291/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G++EVL DGFGFLRS SNY+ DDIY+SP+QIRRF L TGD VEG IR PK+GE
Sbjct: 78 IIGAGTVEVLQDGFGFLRSHDSNYLPGPDDIYISPTQIRRFGLRTGDTVEGPIRGPKDGE 137
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE K++ FDNLTPL P + LE + K++ + RIID+++PI
Sbjct: 138 RYFALLKVNTINFENPEKIKHKVHFDNLTPLFPTQRFKLELDNPPKKDFSPRIIDIVSPI 197
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVI
Sbjct: 198 GKGQRALIVAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMIRSVKGEVI 257
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 258 ASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 317
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 318 VDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 377
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+++KR++PAI++ +SGTR+EELL+ D L+K +VLR++L + +T
Sbjct: 378 VSDKRIFPAIDITRSGTRKEELLVPPDALKKTYVLRRILNPMGVTD 423
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q+IA +IT NH E +IV+LIDERPEEVT+M RSV+GEVIASTFDEPA
Sbjct: 206 VAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDERPEEVTDMIRSVKGEVIASTFDEPA 265
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 266 TRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 325
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 326 PKRFFGAAR 334
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 5/115 (4%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQELMFAI K+ I G G++EVL DGFGFLRS SNY+ DDIY+S
Sbjct: 52 VENASTMRKQELMFAILKQLAANETEIIGAGTVEVLQDGFGFLRSHDSNYLPGPDDIYIS 111
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
P+QIRRF L TG +G IR PK+GERYFALLK+ +N +P+ ++H H
Sbjct: 112 PTQIRRFGLRTGDTVEGPIRGPKDGERYFALLKVNTINFENPEK-----IKHKVH 161
>gi|329114994|ref|ZP_08243749.1| Transcription termination factor Rho [Acetobacter pomorum DM001]
gi|326695437|gb|EGE47123.1| Transcription termination factor Rho [Acetobacter pomorum DM001]
Length = 399
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/356 (64%), Positives = 294/356 (82%), Gaps = 14/356 (3%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G+LE++ DGFG+LRS SNY+ DDIY+SP+Q+RRF L TGD VEG+IR P++GE
Sbjct: 16 IYGEGTLEIMHDGFGYLRSPESNYLPGPDDIYISPTQVRRFALRTGDTVEGQIRAPRDGE 75
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIES--------------K 113
RYF++LKI +N E P+ ++R FDNLTPL+P++ L +E ++ +
Sbjct: 76 RYFSMLKINTINFEPPDAVRHRINFDNLTPLYPERRLQMEVESQATAPEPKSEKGKKSAQ 135
Query: 114 ENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPE 173
++ T R+IDL++PIG GQR L+VA P+SGK+++LQ IA +I+ NH E +IV+LIDERPE
Sbjct: 136 KDFTPRVIDLVSPIGMGQRALIVAPPRSGKTVMLQSIASSISANHPEVFLIVLLIDERPE 195
Query: 174 EVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY 233
EVT+M RSVRGEVIASTFDEPA+RHVQV EMVLEKAKRLVE K+DV+ILLDSITRLARAY
Sbjct: 196 EVTDMARSVRGEVIASTFDEPAHRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAY 255
Query: 234 NTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEE 293
NTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EE
Sbjct: 256 NTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEE 315
Query: 294 FKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
FKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ L K+WVLR++L +
Sbjct: 316 FKGTGNSELVLDRKLADKRTFPAIDITKSGTRKEELLVDRATLSKMWVLRRILAPM 371
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P+SGK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEVIASTFDEPA
Sbjct: 158 VAPPRSGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVIASTFDEPA 217
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 218 HRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQR 277
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 278 PKRFFGAAR 286
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 67/93 (72%)
Query: 402 LMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHT 461
+MFAI K + I+G+G+LE++ DGFG+LRS SNY+ DDIY+SP+Q+RRF L T
Sbjct: 1 MMFAILKALADNDQAIYGEGTLEIMHDGFGYLRSPESNYLPGPDDIYISPTQVRRFALRT 60
Query: 462 GILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
G +G+IR P++GERYF++LKI +N P +
Sbjct: 61 GDTVEGQIRAPRDGERYFSMLKINTINFEPPDA 93
>gi|456351783|dbj|BAM86228.1| transcription termination factor Rho [Agromonas oligotrophica S58]
Length = 421
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/342 (66%), Positives = 291/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFRLELEDPTRKDLSPRVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+A+KR +PAI++ +SGTR+EEL+ + L+K++VLR++L +
Sbjct: 352 VADKRTFPAIDIARSGTRKEELITEPQNLKKMYVLRRILNPM 393
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/283 (46%), Positives = 162/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTMRKQELMFAILKQLAIQEIDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN---------- 488
PSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 86 PSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPD 145
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IAH+IT NH E
Sbjct: 146 ERFRLELEDPTRKDLSPRVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANHPEC 205
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 206 YLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAARHVQVAEMVIEKAKRLVEHGRDVVI 265
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 266 LLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|91974908|ref|YP_567567.1| transcription termination factor Rho [Rhodopseudomonas palustris
BisB5]
gi|91681364|gb|ABE37666.1| transcription termination factor Rho [Rhodopseudomonas palustris
BisB5]
Length = 421
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/339 (66%), Positives = 291/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFRLEIDDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDPQVLKKMYVLRRIL 390
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFA K+ + I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFACLKQLSAKETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDERFRLEIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|317484842|ref|ZP_07943734.1| transcription termination factor Rho [Bilophila wadsworthia 3_1_6]
gi|316923888|gb|EFV45082.1| transcription termination factor Rho [Bilophila wadsworthia 3_1_6]
Length = 432
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/344 (65%), Positives = 295/344 (85%), Gaps = 4/344 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+LPDG+GFLRS S+YM DDIY+SPSQIRRF L GD V G+IR PK GE
Sbjct: 65 IYGDGVLEILPDGYGFLRSPLSSYMPGPDDIYVSPSQIRRFYLRKGDVVSGQIRPPKEGE 124
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+K++ E PE +++ LFDNLTP++P + L++E ++N++ R+IDL++PI
Sbjct: 125 RYFALLKVKEIGFEPPENARHVVLFDNLTPIYPDRKLIME---NGEKNLSCRVIDLMSPI 181
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-GEV 186
G+GQRG++VA P++GK+I+LQ IA++I NH E +IV+LIDERPEEVT+M+R+V+ EV
Sbjct: 182 GRGQRGVIVAPPRTGKTILLQSIANSINANHPEVYLIVLLIDERPEEVTDMERTVKNAEV 241
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEP RHVQV EMVLEKAKRLVE K+DV+ILLDSITRL RAYN V P+SG+VL+G
Sbjct: 242 ISSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSG 301
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
G+D+NALQRPKRFFGAARNIE GGSLTIIATALI+TGSRMD+VI+EEFKGTGNME++L+R
Sbjct: 302 GLDANALQRPKRFFGAARNIEGGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDR 361
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LAEKRV+PAI++N++GTR+E+LL+ DD L+++W+LRK+L ++
Sbjct: 362 HLAEKRVFPAIDINRTGTRKEDLLLSDDVLKRVWILRKILAPMS 405
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 158/282 (56%), Gaps = 81/282 (28%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+ + +RKQEL+FA+ + I+GDG LE+LPDG+GFLRS S+YM DDIY+
Sbjct: 38 EIENASSMRKQELIFAMLQACASRSGAIYGDGVLEILPDGYGFLRSPLSSYMPGPDDIYV 97
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--------------------- 488
SPSQIRRF L G + G+IR PK GERYFALLK+K++
Sbjct: 98 SPSQIRRFYLRKGDVVSGQIRPPKEGERYFALLKVKEIGFEPPENARHVVLFDNLTPIYP 157
Query: 489 --------------------------------VASPKSGKSIILQHIAHAITTNHSEAIM 516
VA P++GK+I+LQ IA++I NH E +
Sbjct: 158 DRKLIMENGEKNLSCRVIDLMSPIGRGQRGVIVAPPRTGKTILLQSIANSINANHPEVYL 217
Query: 517 IVMLIDERPEEVTEMQRSVR-GEVIASTFDEPA--------------------------- 548
IV+LIDERPEEVT+M+R+V+ EVI+STFDEP
Sbjct: 218 IVLLIDERPEEVTDMERTVKNAEVISSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVIL 277
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYN V P+SG+VL+GG+D+NALQRPKRFFGAAR
Sbjct: 278 LDSITRLGRAYNAVTPSSGRVLSGGLDANALQRPKRFFGAAR 319
>gi|86747519|ref|YP_484015.1| transcription termination factor Rho [Rhodopseudomonas palustris
HaA2]
gi|86570547|gb|ABD05104.1| transcription termination factor Rho [Rhodopseudomonas palustris
HaA2]
Length = 421
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/339 (66%), Positives = 291/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFRLEIDDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRIL 390
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFA K+ + I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFACLKQLSAKETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDERFRLEIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|92115740|ref|YP_575469.1| transcription termination factor Rho [Nitrobacter hamburgensis X14]
gi|91798634|gb|ABE61009.1| transcription termination factor Rho [Nitrobacter hamburgensis X14]
Length = 421
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/339 (66%), Positives = 290/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDSTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRIL 390
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFAILKQLAIQEIDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDQRFRLELEDSTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|75674299|ref|YP_316720.1| transcription termination factor Rho [Nitrobacter winogradskyi
Nb-255]
gi|74419169|gb|ABA03368.1| transcription termination factor Rho [Nitrobacter winogradskyi
Nb-255]
Length = 421
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 289/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+A+KR +PAI++ +SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VADKRTFPAIDIARSGTRKEELITDPQLLKKMYVLRRIL 390
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFAILKQLAIQETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDQRFRLELEDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|85709806|ref|ZP_01040871.1| transcription termination factor Rho [Erythrobacter sp. NAP1]
gi|85688516|gb|EAQ28520.1| transcription termination factor Rho [Erythrobacter sp. NAP1]
Length = 421
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/343 (66%), Positives = 292/343 (85%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
+I G G++EVL DGFGFLRS +NY+A DDIY+SP+QIR++ L TGD VEGEIR P+ G
Sbjct: 51 KIMGIGTIEVLQDGFGFLRSPEANYLAGPDDIYVSPNQIRKWGLRTGDTVEGEIRAPREG 110
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ERYFAL + KVN E P + RT FDNLTPL+P + L L+ + ++ + R+ID+I+P
Sbjct: 111 ERYFALTSLAKVNFEDPAAVRMRTNFDNLTPLYPDQKLNLDTVDPTVKDKSARVIDIISP 170
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
GKGQR L+VA P++GK+++LQ+IA AIT NH E ++V+L+DERPEEVT+MQRSV+GEV
Sbjct: 171 QGKGQRALIVAPPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEV 230
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEPA RHVQVAEMV+EKAKRLVE K DV+ILLDSITRL RAYNTV+P+SGKVLTG
Sbjct: 231 ISSTFDEPANRHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLGRAYNTVVPSSGKVLTG 290
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L+R
Sbjct: 291 GVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDR 350
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++++KR++PA+++ KSGTR+EELL++ DKL K+WVLR++L +
Sbjct: 351 KVSDKRIFPALDVGKSGTRKEELLVEKDKLSKMWVLRRILMQM 393
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 160/289 (55%), Gaps = 86/289 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGE---RIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
+L V +R+Q+L+F+I ++ + E +I G G++EVL DGFGFLRS +NY+A
Sbjct: 20 ELGVEGASTMRRQDLLFSILRELAEDEEYEEKIMGIGTIEVLQDGFGFLRSPEANYLAGP 79
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEI--------------------------RVPKNGERY 478
DDIY+SP+QIR++ L TG +GEI R+ N +
Sbjct: 80 DDIYVSPNQIRKWGLRTGDTVEGEIRAPREGERYFALTSLAKVNFEDPAAVRMRTNFDNL 139
Query: 479 FALLKIKKVN------------------------------VASPKSGKSIILQHIAHAIT 508
L +K+N VA P++GK+++LQ+IA AIT
Sbjct: 140 TPLYPDQKLNLDTVDPTVKDKSARVIDIISPQGKGQRALIVAPPRTGKTVLLQNIAKAIT 199
Query: 509 TNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------- 548
NH E ++V+L+DERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 200 DNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPANRHVQVAEMVIEKAKRLVEH 259
Query: 549 -------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 260 KHDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|115522410|ref|YP_779321.1| transcription termination factor Rho [Rhodopseudomonas palustris
BisA53]
gi|115516357|gb|ABJ04341.1| transcription termination factor Rho [Rhodopseudomonas palustris
BisA53]
Length = 421
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/339 (66%), Positives = 290/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFRLELEDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRIL 390
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFA K+ + I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFACLKQLSAKETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDERFRLELEDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|345887003|ref|ZP_08838211.1| transcription termination factor Rho [Bilophila sp. 4_1_30]
gi|345037736|gb|EGW42251.1| transcription termination factor Rho [Bilophila sp. 4_1_30]
Length = 416
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/344 (65%), Positives = 295/344 (85%), Gaps = 4/344 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+LPDG+GFLRS S+YM DDIY+SPSQIRRF L GD V G+IR PK GE
Sbjct: 49 IYGDGVLEILPDGYGFLRSPLSSYMPGPDDIYVSPSQIRRFYLRKGDVVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+K++ E PE +++ LFDNLTP++P + L++E ++N++ R+IDL++PI
Sbjct: 109 RYFALLKVKEIGFEPPENARHVVLFDNLTPIYPDRKLIME---NGEKNLSCRVIDLMSPI 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-GEV 186
G+GQRG++VA P++GK+I+LQ IA++I NH E +IV+LIDERPEEVT+M+R+V+ EV
Sbjct: 166 GRGQRGVIVAPPRTGKTILLQSIANSINANHPEVYLIVLLIDERPEEVTDMERTVKNAEV 225
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEP RHVQV EMVLEKAKRLVE K+DV+ILLDSITRL RAYN V P+SG+VL+G
Sbjct: 226 ISSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSG 285
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
G+D+NALQRPKRFFGAARNIE GGSLTIIATALI+TGSRMD+VI+EEFKGTGNME++L+R
Sbjct: 286 GLDANALQRPKRFFGAARNIEGGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDR 345
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LAEKRV+PAI++N++GTR+E+LL+ DD L+++W+LRK+L ++
Sbjct: 346 HLAEKRVFPAIDINRTGTRKEDLLLSDDVLKRVWILRKILAPMS 389
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 158/282 (56%), Gaps = 81/282 (28%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+ + +RKQEL+FA+ + I+GDG LE+LPDG+GFLRS S+YM DDIY+
Sbjct: 22 EIENASSMRKQELIFAMLQACASRSGAIYGDGVLEILPDGYGFLRSPLSSYMPGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--------------------- 488
SPSQIRRF L G + G+IR PK GERYFALLK+K++
Sbjct: 82 SPSQIRRFYLRKGDVVSGQIRPPKEGERYFALLKVKEIGFEPPENARHVVLFDNLTPIYP 141
Query: 489 --------------------------------VASPKSGKSIILQHIAHAITTNHSEAIM 516
VA P++GK+I+LQ IA++I NH E +
Sbjct: 142 DRKLIMENGEKNLSCRVIDLMSPIGRGQRGVIVAPPRTGKTILLQSIANSINANHPEVYL 201
Query: 517 IVMLIDERPEEVTEMQRSVR-GEVIASTFDEPA--------------------------- 548
IV+LIDERPEEVT+M+R+V+ EVI+STFDEP
Sbjct: 202 IVLLIDERPEEVTDMERTVKNAEVISSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVIL 261
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYN V P+SG+VL+GG+D+NALQRPKRFFGAAR
Sbjct: 262 LDSITRLGRAYNAVTPSSGRVLSGGLDANALQRPKRFFGAAR 303
>gi|319407873|emb|CBI81526.1| transcription termination factor rho (modular protein) [Bartonella
sp. 1-1C]
Length = 621
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 293/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD VEG IR PK GE
Sbjct: 252 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPTQIQNFSLKTGDTVEGPIRGPKEGE 311
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ K+N E PE + + FDNLTPL+ + +E + ++++ R+IDLI+P+
Sbjct: 312 RYFALLKVNKINFEDPEKIRYKIHFDNLTPLYSNERFQMEVQNPTDKDMSSRVIDLISPL 371
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 372 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 431
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 432 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 491
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 492 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 551
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR +PA+++ KSGTR+E+LL+ L KI+VLR++L +++T
Sbjct: 552 VADKRTFPAMDIIKSGTRKEDLLVARQDLHKIFVLRRILAPMSVTD 597
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 186/345 (53%), Gaps = 97/345 (28%)
Query: 329 LLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTID 388
L++ + K +L+ + +S+T T+ + L +K PVE + AET
Sbjct: 178 LIVAPPRTGKTVLLQNIAHSIT-TNHQMKLQELKSKNPVEL---------VSFAET---- 223
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK T I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 224 LEVENASLMRKQELMFAILKKLTLQNVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 283
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 284 LSPTQIQNFSLKTGDTVEGPIRGPKEGERYFALLKVNKINFEDPEKIRYKIHFDNLTPLY 343
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ E++ P + + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 344 SNERFQMEVQNPTDKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 403
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 404 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDV 463
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 464 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 508
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 117/151 (77%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPTQIQNFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ K+N E PE + + FDNLTPL+ + +E + ++++ R+IDLI+P+
Sbjct: 112 RYFALLKVNKINFEDPEKIRYKIHFDNLTPLYSNERFQMEVQNPTDKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNH 158
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNH 202
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK T I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLTLQNVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK 493
LSP+QI+ F+L TG +G IR PK GERYFALLK+ K+N P+
Sbjct: 84 LSPTQIQNFSLKTGDTVEGPIRGPKEGERYFALLKVNKINFEDPE 128
>gi|414176724|ref|ZP_11430953.1| transcription termination factor Rho [Afipia broomeae ATCC 49717]
gi|410886877|gb|EKS34689.1| transcription termination factor Rho [Afipia broomeae ATCC 49717]
Length = 421
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/339 (66%), Positives = 291/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSWDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFRLELDDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRIL 390
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFAILKQLAIQETDIIGEGVVEVLSDGFGFLRSWDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDERFRLELDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|85714092|ref|ZP_01045081.1| transcription termination factor Rho [Nitrobacter sp. Nb-311A]
gi|85699218|gb|EAQ37086.1| transcription termination factor Rho [Nitrobacter sp. Nb-311A]
Length = 421
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/342 (66%), Positives = 290/342 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+A+KR +PAI++ +SGTR+EEL+ L+K++VLR++L +
Sbjct: 352 VADKRTFPAIDIARSGTRKEELITDPQLLKKMYVLRRILNPM 393
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 164/286 (57%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELGVENASTMRKQELMFAILKQLAIQETDIIGEGVVEVLSDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN------- 488
Y+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 83 YVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPL 142
Query: 489 -------------------------------------VASPKSGKSIILQHIAHAITTNH 511
VA P++GK++++Q+IAH+IT NH
Sbjct: 143 FPDQRFRLELEDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 203 PECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|395792670|ref|ZP_10472094.1| transcription termination factor Rho [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423713332|ref|ZP_17687592.1| transcription termination factor Rho [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395423373|gb|EJF89568.1| transcription termination factor Rho [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432227|gb|EJF98216.1| transcription termination factor Rho [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 421
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 293/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTVEGFIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N E PE + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEDPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILTPMNVTD 397
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPAQIQSFSLKTGDTVEGFIRSPKEGERYFALLKINTINFEDPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEHGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|393770839|ref|ZP_10359316.1| transcription termination factor Rho [Novosphingobium sp. Rr 2-17]
gi|392723737|gb|EIZ81125.1| transcription termination factor Rho [Novosphingobium sp. Rr 2-17]
Length = 418
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 225/345 (65%), Positives = 296/345 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I G G++EVL DGFGFLRS ++Y+A DDIY+SP+Q+R++ L TGD VEGEIR P+
Sbjct: 46 GEEIVGQGTIEVLTDGFGFLRSPEASYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPR 105
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+GERYFA+ K+ +N + P++ ++R FDNLTPL+P + L L+ + ++ + R+IDLI
Sbjct: 106 DGERYFAITKLISINFDDPDVVRHRVNFDNLTPLYPNERLNLDSLDPTVKDKSARVIDLI 165
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
+P GKGQR L+VA P++GK+++LQ++A AIT NH E ++V+L+DERPEEVT+MQRSV+G
Sbjct: 166 SPQGKGQRALIVAPPRTGKTVLLQNMAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKG 225
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNTV+P+SGKVL
Sbjct: 226 EVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVL 285
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSL+IIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 286 TGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 345
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++A+KR++PA+++ KSGTR+EELL+ D+L K+WVLR++L +
Sbjct: 346 DRKVADKRIFPALDVGKSGTRKEELLVPADQLSKMWVLRRILMQM 390
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 130/306 (42%), Positives = 170/306 (55%), Gaps = 88/306 (28%)
Query: 369 KNLLKDACMPLV-LAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLP 427
K L K + LV +AE +L V +R+Q+LMF I K+ + GE I G G++EVL
Sbjct: 4 KELKKKSSAELVEMAE----ELGVEGASTMRRQDLMFGILKEVAEDGEEIVGQGTIEVLT 59
Query: 428 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKV 487
DGFGFLRS ++Y+A DDIY+SP+Q+R++ L TG +GEIR P++GERYFA+ K+ +
Sbjct: 60 DGFGFLRSPEASYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPRDGERYFAITKLISI 119
Query: 488 NVASP--------------------------------KSGKSI----------------- 498
N P KS + I
Sbjct: 120 NFDDPDVVRHRVNFDNLTPLYPNERLNLDSLDPTVKDKSARVIDLISPQGKGQRALIVAP 179
Query: 499 -------ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--- 548
+LQ++A AIT NH E ++V+L+DERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 180 PRTGKTVLLQNMAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPAQRH 239
Query: 549 ------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKR 584
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKR
Sbjct: 240 VQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKR 299
Query: 585 FFGAAR 590
FFGAAR
Sbjct: 300 FFGAAR 305
>gi|220904724|ref|YP_002480036.1| transcription termination factor Rho [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869023|gb|ACL49358.1| transcription termination factor Rho [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 431
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/344 (65%), Positives = 293/344 (85%), Gaps = 4/344 (1%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+GDG LE+LPDGFGFLRS +YM DDIY+SPSQIRRF+L GD V G+IR PK GE
Sbjct: 64 IYGDGVLEILPDGFGFLRSPLCSYMPGPDDIYVSPSQIRRFSLRKGDIVSGQIRPPKEGE 123
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ ++ E PE +KN LFDNLTP++P L++E ++N++ R+ID++API
Sbjct: 124 RYFALLKVTEIGFEPPEHAKNLVLFDNLTPIYPDHQLVME---NGEKNLSNRVIDIMAPI 180
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-GEV 186
G+GQRGL+VA P++GK+I+LQ +A+AI N+ E +IV+LIDERPEEVT+M+R+V+ EV
Sbjct: 181 GRGQRGLIVAPPRTGKTILLQSLANAINANNPEVYLIVLLIDERPEEVTDMERTVKKAEV 240
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEP RHVQV EMVLEKAKRLVE K+DV+ILLDSITRL RAYN V P+SG+VL+G
Sbjct: 241 ISSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSG 300
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
G+D+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGNME++L+R
Sbjct: 301 GLDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDR 360
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
L+EKRV+PAI++N++GTR+E+LL+ +D L ++W+LRK+L ++
Sbjct: 361 HLSEKRVFPAIDINRTGTRKEDLLLPEDVLNRVWILRKILAPMS 404
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 169/309 (54%), Gaps = 89/309 (28%)
Query: 371 LLKDACMPLVLAETQTI----DL----EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGS 422
LL D+ + L +T+++ DL E+ + +RKQEL+FA+ I+GDG
Sbjct: 10 LLTDSALSLTDLKTRSMQELMDLAEQYEIENASSMRKQELIFALLSTCASQNGAIYGDGV 69
Query: 423 LEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALL 482
LE+LPDGFGFLRS +YM DDIY+SPSQIRRF+L G + G+IR PK GERYFALL
Sbjct: 70 LEILPDGFGFLRSPLCSYMPGPDDIYVSPSQIRRFSLRKGDIVSGQIRPPKEGERYFALL 129
Query: 483 KIKKVN-----------------------------------------------------V 489
K+ ++ V
Sbjct: 130 KVTEIGFEPPEHAKNLVLFDNLTPIYPDHQLVMENGEKNLSNRVIDIMAPIGRGQRGLIV 189
Query: 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-RGEVIASTFDEPA 548
A P++GK+I+LQ +A+AI N+ E +IV+LIDERPEEVT+M+R+V + EVI+STFDEP
Sbjct: 190 APPRTGKTILLQSLANAINANNPEVYLIVLLIDERPEEVTDMERTVKKAEVISSTFDEPP 249
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN V P+SG+VL+GG+D+NALQR
Sbjct: 250 QRHVQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSGGLDANALQR 309
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 310 PKRFFGAAR 318
>gi|319406399|emb|CBI80040.1| transcription termination factor rho [Bartonella sp. AR 15-3]
Length = 421
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 292/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPTQIQNFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE + + FDNLTPL+ + +E + ++++ R+IDLI+P+
Sbjct: 112 RYFALLKVNTINFEDPEKIRYKIHFDNLTPLYSNERFQMEVQNPTDKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR +PA+++ KSGTR+EELL+ L KI+VLR++L +++T
Sbjct: 352 VADKRTFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMSVTD 397
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/285 (42%), Positives = 160/285 (56%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK T I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLTLQKVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPTQIQNFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFEDPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ E++ P + + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEVQNPTDKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|387886496|ref|YP_006316795.1| transcription termination factor Rho [Francisella noatunensis
subsp. orientalis str. Toba 04]
gi|386871312|gb|AFJ43319.1| transcription termination factor Rho [Francisella noatunensis
subsp. orientalis str. Toba 04]
Length = 420
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/342 (67%), Positives = 292/342 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+G+G LEVL DG+GFLRS S+Y AS DDIY+SP+ IR+ NL TGD + G+IR P+
Sbjct: 45 GEDIYGEGILEVLQDGYGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPR 104
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ E+YFA+ I VN + PEL++ + LF+NLTP + K+ L +E S E+IT R+IDL
Sbjct: 105 DNEKYFAVKHIDSVNFDSPELARKKILFENLTPEYAKERLTMEIGNGSSEDITARVIDLA 164
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQRGL+VA PK+GK+I++Q+IA +I NH E +I++LIDERPEEVTEMQRSVRG
Sbjct: 165 APFGKGQRGLIVAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRG 224
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQ+AE+V+EKAKRLVE K+DV+ILLDSITRLARAYNTV PASG+VL
Sbjct: 225 EVVASTFDEPAARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVL 284
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
+GGV++NALQ+PKRFFGAARN EGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNME+HL
Sbjct: 285 SGGVEANALQKPKRFFGAARNTAEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELHL 344
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R++AE+RV+PAI+ ++SGTRREELL ++LQK+WVLRK+L
Sbjct: 345 DRKIAERRVFPAISFDRSGTRREELLTTPEELQKLWVLRKIL 386
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 161/304 (52%), Gaps = 86/304 (28%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + ++ Q++DLE R RKQEL+F+I K GE I+G+G LEVL DG
Sbjct: 4 NELKYKSVNELMDIAQSLDLES---LRARKQELIFSILKYHADKGEDIYGEGILEVLQDG 60
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
+GFLRS S+Y AS DDIY+SP+ IR+ NL TG G+IR P++ E+YFA+ I VN
Sbjct: 61 YGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPRDNEKYFAVKHIDSVNF 120
Query: 490 ASPKSGKSIIL----------QHIAHAITTNHSEAI------------------------ 515
SP+ + IL + + I SE I
Sbjct: 121 DSPELARKKILFENLTPEYAKERLTMEIGNGSSEDITARVIDLAAPFGKGQRGLIVAPPK 180
Query: 516 ----------------------MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----- 548
+I++LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 181 TGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRGEVVASTFDEPAARHVQ 240
Query: 549 ----------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFF 586
L + +LARAYNTV PASG+VL+GGV++NALQ+PKRFF
Sbjct: 241 LAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVLSGGVEANALQKPKRFF 300
Query: 587 GAAR 590
GAAR
Sbjct: 301 GAAR 304
>gi|167627497|ref|YP_001677997.1| transcription termination factor Rho [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|254876602|ref|ZP_05249312.1| transcription termination factor Rho [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|337754898|ref|YP_004647409.1| transcription termination factor Rho [Francisella sp. TX077308]
gi|167597498|gb|ABZ87496.1| transcription termination factor Rho [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|254842623|gb|EET21037.1| transcription termination factor Rho [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|336446503|gb|AEI35809.1| Transcription termination factor Rho [Francisella sp. TX077308]
Length = 420
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/342 (67%), Positives = 292/342 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+G+G LEVL DG+GFLRS S+Y AS DDIY+SP+ IR+ NL TGD + G+IR P+
Sbjct: 45 GEDIYGEGILEVLQDGYGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPR 104
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ E+YFA+ I VN + PEL++ + LF+NLTP + K+ L +E S E+IT R+IDL
Sbjct: 105 DNEKYFAVKHIDSVNFDSPELARKKILFENLTPEYAKERLTMEIGNGSNEDITARVIDLA 164
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQRGL+VA PK+GK+I++Q+IA +I NH E +I++LIDERPEEVTEMQRSVRG
Sbjct: 165 APFGKGQRGLIVAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRG 224
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQ+AE+V+EKAKRLVE K+DV+ILLDSITRLARAYNTV PASG+VL
Sbjct: 225 EVVASTFDEPAARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVL 284
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
+GGV++NALQ+PKRFFGAARN EGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNME+HL
Sbjct: 285 SGGVEANALQKPKRFFGAARNTAEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELHL 344
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R++AE+RV+PAI+ ++SGTRREELL ++LQK+WVLRK+L
Sbjct: 345 DRKIAERRVFPAISFDRSGTRREELLTTPEELQKLWVLRKIL 386
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA +I NH E +I++LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 176 VAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRGEVVASTFDEPA 235
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASG+VL+GGV++NALQ+
Sbjct: 236 ARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVLSGGVEANALQK 295
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 296 PKRFFGAAR 304
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + ++ Q++DLE R RKQEL+F+I K GE I+G+G LEVL DG
Sbjct: 4 NELKYKSVNELMDIAQSLDLES---LRARKQELIFSILKYHADKGEDIYGEGILEVLQDG 60
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
+GFLRS S+Y AS DDIY+SP+ IR+ NL TG G+IR P++ E+YFA+ I VN
Sbjct: 61 YGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPRDNEKYFAVKHIDSVNF 120
Query: 490 ASPKSGKSIIL 500
SP+ + IL
Sbjct: 121 DSPELARKKIL 131
>gi|338972502|ref|ZP_08627875.1| Transcription termination factor Rho [Bradyrhizobiaceae bacterium
SG-6C]
gi|414169346|ref|ZP_11425183.1| transcription termination factor Rho [Afipia clevelandensis ATCC
49720]
gi|338234287|gb|EGP09404.1| Transcription termination factor Rho [Bradyrhizobiaceae bacterium
SG-6C]
gi|410886105|gb|EKS33918.1| transcription termination factor Rho [Afipia clevelandensis ATCC
49720]
Length = 421
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/342 (66%), Positives = 291/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLSDGFGFLRSWDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE SK++ FDNLTPL P + LE + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFKLEIDDPTRKDLSPRVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+A+KR +PAI++ +SGTR+EEL+ L+K++VLR++L +
Sbjct: 352 VADKRTFPAIDIARSGTRKEELITDPQLLKKMYVLRRILNPM 393
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/283 (46%), Positives = 162/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQELMFAI K+ I G+G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTMRKQELMFAILKQLAIAETDIIGEGVVEVLSDGFGFLRSWDANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN---------- 488
PSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 86 PSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPD 145
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IAH+IT NH E
Sbjct: 146 ERFKLEIDDPTRKDLSPRVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANHPEC 205
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 206 YLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVI 265
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 266 LLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|449128600|ref|ZP_21764846.1| transcription termination factor Rho [Treponema denticola SP33]
gi|448941008|gb|EMB21912.1| transcription termination factor Rho [Treponema denticola SP33]
Length = 543
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/348 (66%), Positives = 292/348 (83%), Gaps = 3/348 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR FNL TGD V G+IR
Sbjct: 165 TNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRLFNLKTGDTVYGQIR 224
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALL+++ VN ++P S+ R FDNLTPL+PK+ L LE + + I+ RI+
Sbjct: 225 SPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPKEKLNLET---TTQEISTRIM 281
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L PIGKGQRGL+VA P++GK+I+LQ IA+AIT NH E +IV+LIDERPEEVT+M+R+
Sbjct: 282 NLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDERPEEVTDMERT 341
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V EVI+STFDE A RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYN +P SG
Sbjct: 342 VNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNQTMPTSG 401
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVDSN+L +PKRFFGAARNIEEGGSLTIIATALIETGS+MD+VI+EEFKGTGNME
Sbjct: 402 KVLSGGVDSNSLHKPKRFFGAARNIEEGGSLTIIATALIETGSKMDEVIFEEFKGTGNME 461
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
V+L+R+L+++R++PAIN+ +SGTR+EELL+ + ++Q +W+LRK + S+
Sbjct: 462 VNLDRKLSDRRLFPAINIKRSGTRKEELLLTEAEMQLMWILRKFISSM 509
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 154/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++KQ++++ I K T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR
Sbjct: 151 MKKQDVIYHILKNHTNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRL 210
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GERYFALL+++ VN
Sbjct: 211 FNLKTGDTVYGQIRSPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPKEKLNLE 270
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I+LQ IA+AIT NH E +IV+LIDE
Sbjct: 271 TTTQEISTRIMNLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDE 330
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V EVI+STFDE A L + +LA
Sbjct: 331 RPEEVTDMERTVNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLA 390
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGKVL+GGVDSN+L +PKRFFGAAR
Sbjct: 391 RAYNQTMPTSGKVLSGGVDSNSLHKPKRFFGAAR 424
>gi|395782164|ref|ZP_10462568.1| transcription termination factor Rho [Bartonella rattimassiliensis
15908]
gi|395419103|gb|EJF85404.1| transcription termination factor Rho [Bartonella rattimassiliensis
15908]
Length = 421
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/345 (66%), Positives = 293/345 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD +EG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTIEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N EK E + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEKTEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVT 396
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPAQIQSFSLKTGDTIEGPIRSPKEGERYFALLKINTINFEKTEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|449120098|ref|ZP_21756484.1| transcription termination factor Rho [Treponema denticola H1-T]
gi|449122503|ref|ZP_21758836.1| transcription termination factor Rho [Treponema denticola MYR-T]
gi|448947493|gb|EMB28337.1| transcription termination factor Rho [Treponema denticola MYR-T]
gi|448948242|gb|EMB29079.1| transcription termination factor Rho [Treponema denticola H1-T]
Length = 548
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/348 (66%), Positives = 292/348 (83%), Gaps = 3/348 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR FNL TGD V G+IR
Sbjct: 170 TNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRLFNLKTGDTVYGQIR 229
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALL+++ VN ++P S+ R FDNLTPL+PK+ L LE + + I+ RI+
Sbjct: 230 SPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPKEKLNLET---TTQEISTRIM 286
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L PIGKGQRGL+VA P++GK+I+LQ IA+AIT NH E +IV+LIDERPEEVT+M+R+
Sbjct: 287 NLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDERPEEVTDMERT 346
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V EVI+STFDE A RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYN +P SG
Sbjct: 347 VNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNQTMPTSG 406
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVDSN+L +PKRFFGAARNIEEGGSLTIIATALIETGS+MD+VI+EEFKGTGNME
Sbjct: 407 KVLSGGVDSNSLHKPKRFFGAARNIEEGGSLTIIATALIETGSKMDEVIFEEFKGTGNME 466
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
V+L+R+L+++R++PAIN+ +SGTR+EELL+ + ++Q +W+LRK + S+
Sbjct: 467 VNLDRKLSDRRLFPAINIKRSGTRKEELLLTEAEMQLMWILRKFISSM 514
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 154/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++KQ++++ I K T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR
Sbjct: 156 MKKQDVIYHILKNHTNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRL 215
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GERYFALL+++ VN
Sbjct: 216 FNLKTGDTVYGQIRSPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPKEKLNLE 275
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I+LQ IA+AIT NH E +IV+LIDE
Sbjct: 276 TTTQEISTRIMNLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDE 335
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V EVI+STFDE A L + +LA
Sbjct: 336 RPEEVTDMERTVNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLA 395
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGKVL+GGVDSN+L +PKRFFGAAR
Sbjct: 396 RAYNQTMPTSGKVLSGGVDSNSLHKPKRFFGAAR 429
>gi|49474830|ref|YP_032872.1| transcription termination factor Rho [Bartonella quintana str.
Toulouse]
gi|403531136|ref|YP_006665665.1| transcription termination factor Rho [Bartonella quintana RM-11]
gi|49240334|emb|CAF26816.1| Transcription termination factor rho [Bartonella quintana str.
Toulouse]
gi|403233207|gb|AFR26950.1| transcription termination factor Rho [Bartonella quintana RM-11]
Length = 421
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/345 (66%), Positives = 292/345 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTVEGPIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N E PE + + FDNL PL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEDPEKIRYKIHFDNLIPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAMRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVT 396
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 158/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLASQDIEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP+QI+ R+ +H L
Sbjct: 84 LSPAQIQSFSLKTGDTVEGPIRSPKEGERYFALLKINTINFEDPEKIRYKIHFDNLIPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAMRHVQVAEMVIEKAKRLVEYGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|456863569|gb|EMF82036.1| transcription termination factor Rho [Leptospira weilii serovar
Topaz str. LT2116]
Length = 483
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 115 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 174
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 175 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 231
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 232 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECALIVLLIDERPEEVTDMARHVRGEV 291
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 292 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 351
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 352 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 411
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 412 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 457
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 88 LGVENTSGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 147
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 148 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 207
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 208 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECA 267
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 268 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 327
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 328 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 369
>gi|451942743|ref|YP_007463380.1| transcription termination factor Rho [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451902130|gb|AGF76592.1| transcription termination factor Rho [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 421
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 292/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP QI+ F+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPVQIQSFSLKTGDTVEGLIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N E PE + + FDNLTPL+ + +E ++++++ R+IDLI+P+
Sbjct: 112 RYFALLKINTINFEDPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+EELL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILTPMNVTD 397
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 157/285 (55%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +NY+ DDIY
Sbjct: 24 LEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPDDIY 83
Query: 449 LSPSQIR----------------------------------------RFNLHTGIL---- 464
LSP QI+ R+ +H L
Sbjct: 84 LSPVQIQSFSLKTGDTVEGLIRSPKEGERYFALLKINTINFEDPEKIRYKIHFDNLTPLY 143
Query: 465 ----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
++ EI+ P + ++ + + + VA P++GK+++LQ+IAH+ITTNH
Sbjct: 144 SNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHP 203
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 204 ECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAIRHVQVAEMVIEKAKRLVEHGRDV 263
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 VILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|359727539|ref|ZP_09266235.1| transcription termination factor Rho [Leptospira weilii str.
2006001855]
gi|417779206|ref|ZP_12426998.1| transcription termination factor Rho [Leptospira weilii str.
2006001853]
gi|410780541|gb|EKR65128.1| transcription termination factor Rho [Leptospira weilii str.
2006001853]
Length = 483
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 115 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 174
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 175 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 231
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 232 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECALIVLLIDERPEEVTDMARHVRGEV 291
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 292 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 351
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 352 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 411
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 412 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 457
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 88 LGVENTSGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 147
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 148 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 207
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 208 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECA 267
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 268 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 327
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 328 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 369
>gi|389690663|ref|ZP_10179556.1| transcription termination factor Rho [Microvirga sp. WSM3557]
gi|388588906|gb|EIM29195.1| transcription termination factor Rho [Microvirga sp. WSM3557]
Length = 421
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/342 (66%), Positives = 289/342 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G +EVL DGFGFLRS SNY+ DDIY+SPSQIR+F L TGD V+G IR PK GE
Sbjct: 52 IIGAGVVEVLQDGFGFLRSADSNYLPGPDDIYVSPSQIRKFGLRTGDTVDGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +++ FDNLTPL P + LE ++++ + RIID+++PI
Sbjct: 112 RYFALLKVNTINFEDPEKIRHKVHFDNLTPLFPHERFKLELEDPTRKDFSPRIIDIVSPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q++A +ITTNH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNVAQSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 ASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+A+KR +PAI++ +SGTR+EELL+ D L+K++VLR++L +
Sbjct: 352 VADKRTFPAIDITRSGTRKEELLVPSDTLKKMYVLRRILNPM 393
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 150/287 (52%), Gaps = 85/287 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL-----------------PDG- 429
+LEV + +RKQELMFAI K+ I G G +EVL PD
Sbjct: 23 ELEVENASTMRKQELMFAILKQLAAREVEIIGAGVVEVLQDGFGFLRSADSNYLPGPDDI 82
Query: 430 ---------FGFLRS------------QGSNYMA--SSDDI-YLSPSQIRR---FNLHTG 462
FG LR+ +G Y A + I + P +IR F+ T
Sbjct: 83 YVSPSQIRKFG-LRTGDTVDGPIRGPKEGERYFALLKVNTINFEDPEKIRHKVHFDNLTP 141
Query: 463 IL----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTN 510
+ +K E+ P + ++ I + + VA P++GK++++Q++A +ITTN
Sbjct: 142 LFPHERFKLELEDPTRKDFSPRIIDIVSPIGKGQRALIVAPPRTGKTVLMQNVAQSITTN 201
Query: 511 HSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------- 548
H E +IV+LIDERPEEVT+MQRSV+GEV+ASTFDEPA
Sbjct: 202 HPECYLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPATRHVQVAEMVIEKAKRLVEHGR 261
Query: 549 -----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 262 DVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|94264417|ref|ZP_01288207.1| Transcription termination factor Rho [delta proteobacterium MLMS-1]
gi|93455174|gb|EAT05392.1| Transcription termination factor Rho [delta proteobacterium MLMS-1]
Length = 423
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/343 (66%), Positives = 291/343 (84%), Gaps = 4/343 (1%)
Query: 9 FGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGER 68
+G G LEVLPDGFGFLR+ NY+ DDIY+SPSQIRR NL TGD +EG +R PK+ ER
Sbjct: 53 YGGGVLEVLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRLNLRTGDTIEGPVRAPKDSER 112
Query: 69 YFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIG 128
YFALLK+ KVN + P+ ++++TLF NLTPLHP + + LER ++ + RI+D++APIG
Sbjct: 113 YFALLKVDKVNFDPPDKTRDKTLFTNLTPLHPNERINLER---LPDHYSTRILDMMAPIG 169
Query: 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-GEVI 187
KGQRGL+VA P++GK++++ IA++IT NH + I+IV+LIDERPEEVT+M R V EVI
Sbjct: 170 KGQRGLIVAPPRTGKTVLITDIANSITRNHPDTILIVLLIDERPEEVTDMSRGVENAEVI 229
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RH+QVAEMVL+KA+RLVE KKDV+ILLDSITRLARAYNTV+P SGK+L+GG
Sbjct: 230 SSTFDEPPQRHIQVAEMVLDKARRLVEHKKDVVILLDSITRLARAYNTVVPPSGKILSGG 289
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNAL RPKRFFGAARNIEEGGSLTIIA+ALIETGSRMDDVI+EEFKGTGNME+ L+R+
Sbjct: 290 VDSNALHRPKRFFGAARNIEEGGSLTIIASALIETGSRMDDVIFEEFKGTGNMEIVLDRK 349
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LA++R+YPA+++ KSGTR+E+LL+ +++ KIW+LRKLL S+
Sbjct: 350 LADRRIYPAMDITKSGTRKEDLLLSAEEMNKIWILRKLLASMN 392
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 160/288 (55%), Gaps = 86/288 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKT----KIGERIFGDGSLEVLPDGFGFLRSQGSNYMAS 443
DL + +RKQEL+FAI +K+T K G+ +G G LEVLPDGFGFLR+ NY+
Sbjct: 20 DLNIEGYTAMRKQELIFAIIQKQTTSNGKNGDN-YGGGVLEVLPDGFGFLRAPDYNYLPG 78
Query: 444 SDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--------------- 488
DDIY+SPSQIRR NL TG +G +R PK+ ERYFALLK+ KVN
Sbjct: 79 PDDIYVSPSQIRRLNLRTGDTIEGPVRAPKDSERYFALLKVDKVNFDPPDKTRDKTLFTN 138
Query: 489 --------------------------------------VASPKSGKSIILQHIAHAITTN 510
VA P++GK++++ IA++IT N
Sbjct: 139 LTPLHPNERINLERLPDHYSTRILDMMAPIGKGQRGLIVAPPRTGKTVLITDIANSITRN 198
Query: 511 HSEAIMIVMLIDERPEEVTEMQRSV-RGEVIASTFDEPA--------------------- 548
H + I+IV+LIDERPEEVT+M R V EVI+STFDEP
Sbjct: 199 HPDTILIVLLIDERPEEVTDMSRGVENAEVISSTFDEPPQRHIQVAEMVLDKARRLVEHK 258
Query: 549 ------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+L+GGVDSNAL RPKRFFGAAR
Sbjct: 259 KDVVILLDSITRLARAYNTVVPPSGKILSGGVDSNALHRPKRFFGAAR 306
>gi|418696029|ref|ZP_13257039.1| transcription termination factor Rho [Leptospira kirschneri str.
H1]
gi|409956209|gb|EKO15140.1| transcription termination factor Rho [Leptospira kirschneri str.
H1]
Length = 482
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 114 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 173
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+LK++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 174 ERFFAMLKVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 230
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 231 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEV 290
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 291 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 350
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 351 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 410
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 411 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 456
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 87 LGVENTGGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 146
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+LK++ VN
Sbjct: 147 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLKVETVNGYTPDVAGKRALFDNLTPLY 206
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 207 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECS 266
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 267 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 326
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 327 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 368
>gi|398331357|ref|ZP_10516062.1| transcription termination factor Rho [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 483
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 115 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 174
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 175 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 231
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 232 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECALIVLLIDERPEEVTDMARHVRGEV 291
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 292 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 351
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 352 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 411
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 412 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 457
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 88 LGVENTSGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 147
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 148 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 207
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 208 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECA 267
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 268 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 327
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 328 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 369
>gi|449115849|ref|ZP_21752309.1| transcription termination factor Rho [Treponema denticola H-22]
gi|449126255|ref|ZP_21762548.1| transcription termination factor Rho [Treponema denticola OTK]
gi|448938447|gb|EMB19378.1| transcription termination factor Rho [Treponema denticola OTK]
gi|448955335|gb|EMB36102.1| transcription termination factor Rho [Treponema denticola H-22]
Length = 548
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/348 (66%), Positives = 292/348 (83%), Gaps = 3/348 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR FNL TGD V G+IR
Sbjct: 170 TNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRLFNLKTGDTVYGQIR 229
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALL+++ VN ++P S+ R FDNLTPL+PK+ L LE + + I+ RI+
Sbjct: 230 SPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPKEKLNLET---TTQEISTRIM 286
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L PIGKGQRGL+VA P++GK+I+LQ IA+AIT NH E +IV+LIDERPEEVT+M+R+
Sbjct: 287 NLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDERPEEVTDMERT 346
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V EVI+STFDE A RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYN +P SG
Sbjct: 347 VNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNQTMPTSG 406
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVDSN+L +PKRFFGAARNIEEGGSLTIIATALIETGS+MD+VI+EEFKGTGNME
Sbjct: 407 KVLSGGVDSNSLHKPKRFFGAARNIEEGGSLTIIATALIETGSKMDEVIFEEFKGTGNME 466
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
V+L+R+L+++R++PAIN+ +SGTR+EELL+ + ++Q +W+LRK + S+
Sbjct: 467 VNLDRKLSDRRLFPAINIKRSGTRKEELLLTEAEMQLMWILRKFISSM 514
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 154/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++KQ++++ I K T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR
Sbjct: 156 MKKQDVIYHILKNHTNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRL 215
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GERYFALL+++ VN
Sbjct: 216 FNLKTGDTVYGQIRSPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPKEKLNLE 275
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I+LQ IA+AIT NH E +IV+LIDE
Sbjct: 276 TTTQEISTRIMNLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDE 335
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V EVI+STFDE A L + +LA
Sbjct: 336 RPEEVTDMERTVNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLA 395
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGKVL+GGVDSN+L +PKRFFGAAR
Sbjct: 396 RAYNQTMPTSGKVLSGGVDSNSLHKPKRFFGAAR 429
>gi|418719763|ref|ZP_13278962.1| transcription termination factor Rho [Leptospira borgpetersenii
str. UI 09149]
gi|418737851|ref|ZP_13294248.1| transcription termination factor Rho [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|421093721|ref|ZP_15554445.1| transcription termination factor Rho [Leptospira borgpetersenii
str. 200801926]
gi|410363704|gb|EKP14733.1| transcription termination factor Rho [Leptospira borgpetersenii
str. 200801926]
gi|410743806|gb|EKQ92548.1| transcription termination factor Rho [Leptospira borgpetersenii
str. UI 09149]
gi|410747045|gb|EKQ99951.1| transcription termination factor Rho [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|456889692|gb|EMG00575.1| transcription termination factor Rho [Leptospira borgpetersenii
str. 200701203]
Length = 481
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 113 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 172
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 173 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 229
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 230 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECTLIVLLIDERPEEVTDMARHVRGEV 289
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 290 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 349
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 350 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 409
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 410 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 455
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 86 LGVENTSGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 145
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 146 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 205
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 206 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECT 265
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 266 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 325
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 326 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 367
>gi|291288205|ref|YP_003505021.1| transcription termination factor Rho [Denitrovibrio acetiphilus DSM
12809]
gi|290885365|gb|ADD69065.1| transcription termination factor Rho [Denitrovibrio acetiphilus DSM
12809]
Length = 413
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/344 (68%), Positives = 290/344 (84%), Gaps = 5/344 (1%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
+I+G G +E+LPDGFGFLRS NY+ DDIY+SP+QIR+F L GD V GEIR PK+
Sbjct: 48 QIYGQGVIEILPDGFGFLRSPNYNYLPGPDDIYVSPAQIRKFGLRNGDTVAGEIRPPKDN 107
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
E+YFALLK+++VN E S+ RTLF+NLTPL P++ L LE + E RI++L+AP
Sbjct: 108 EKYFALLKVEEVNFEAA--SRIRTLFENLTPLFPEERLQLEYKPIAYET---RIMNLLAP 162
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA PK+GK+++L+ IA+AITTNH E +I++LIDERPEEVT+MQRSV EV
Sbjct: 163 IGKGQRALIVAPPKTGKTMLLKSIANAITTNHPEVFLIILLIDERPEEVTDMQRSVDAEV 222
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
I+STFDEPAYRHVQVAEMVL KAKRLVE KKDV+ILLDSITRLARAYN++ P SGKVL+G
Sbjct: 223 ISSTFDEPAYRHVQVAEMVLNKAKRLVEHKKDVVILLDSITRLARAYNSIEPPSGKVLSG 282
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSL+IIA+AL++TGSRMD+VIYEEFKGTGNME+HL+R
Sbjct: 283 GVDSNALHKPKRFFGAARNIEEGGSLSIIASALVDTGSRMDEVIYEEFKGTGNMELHLDR 342
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
RL E+R +PAI++NKSGTRREELL+ D+L KIW+LR+ L ++
Sbjct: 343 RLVERRTFPAIDINKSGTRREELLLTKDELNKIWILRRFLSNMN 386
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/272 (45%), Positives = 156/272 (57%), Gaps = 78/272 (28%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
L KQEL+F I K+ + +I+G G +E+LPDGFGFLRS NY+ DDIY+SP+QIR+
Sbjct: 29 LLKQELIFEILKQTSARNGQIYGQGVIEILPDGFGFLRSPNYNYLPGPDDIYVSPAQIRK 88
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
F L G GEIR PK+ E+YFALLK+++VN
Sbjct: 89 FGLRNGDTVAGEIRPPKDNEKYFALLKVEEVNFEAASRIRTLFENLTPLFPEERLQLEYK 148
Query: 489 -----------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP 525
VA PK+GK+++L+ IA+AITTNH E +I++LIDERP
Sbjct: 149 PIAYETRIMNLLAPIGKGQRALIVAPPKTGKTMLLKSIANAITTNHPEVFLIILLIDERP 208
Query: 526 EEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLARA 558
EEVT+MQRSV EVI+STFDEPA L + +LARA
Sbjct: 209 EEVTDMQRSVDAEVISSTFDEPAYRHVQVAEMVLNKAKRLVEHKKDVVILLDSITRLARA 268
Query: 559 YNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
YN++ P SGKVL+GGVDSNAL +PKRFFGAAR
Sbjct: 269 YNSIEPPSGKVLSGGVDSNALHKPKRFFGAAR 300
>gi|395783703|ref|ZP_10463552.1| transcription termination factor Rho [Bartonella melophagi K-2C]
gi|319409466|emb|CBI83115.1| transcription termination factor rho [Bartonella schoenbuchensis
R1]
gi|395425825|gb|EJF91985.1| transcription termination factor Rho [Bartonella melophagi K-2C]
Length = 421
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 291/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIYLSP+QI+ F+L TGD VEG IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTVEGPIRGPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLKI +N E PE + + FDNLTPL+ + +E + ++++ R++DLI+P+
Sbjct: 112 RYFALLKINTINFEDPEKIRYKIHFDNLTPLYSNERFQMEMQDSTNKDMSSRVVDLISPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVTGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAIRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR++PA+++ KSGTR+E+LL+ L KI+VLR++L + +T
Sbjct: 352 VADKRIFPAMDVLKSGTRKEDLLVARQDLHKIFVLRRILAPMNVTD 397
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+ITTNH E +IV+LIDERPEEVT+MQRSV GEVI+STFDEPA
Sbjct: 180 VAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVTGEVISSTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 240 IRHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 76/115 (66%), Gaps = 4/115 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
+ AET LEV + +RKQELMFAI KK I G+G +EVL DGFGFLRS +
Sbjct: 18 VTFAET----LEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADA 73
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK 493
NY+ DDIYLSP+QI+ F+L TG +G IR PK GERYFALLKI +N P+
Sbjct: 74 NYLPGPDDIYLSPAQIQSFSLKTGDTVEGPIRGPKEGERYFALLKINTINFEDPE 128
>gi|304392710|ref|ZP_07374650.1| transcription termination factor Rho [Ahrensia sp. R2A130]
gi|303295340|gb|EFL89700.1| transcription termination factor Rho [Ahrensia sp. R2A130]
Length = 421
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/346 (65%), Positives = 294/346 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G +EVL DGF FLRS G+NY+ DDIY+SPSQ+++F L TGD VEG IR P+ GE
Sbjct: 52 IIGQGVVEVLQDGFAFLRSPGANYLPGPDDIYVSPSQLKKFALRTGDTVEGPIRSPQEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALL + +N ++PE K++ FDNLTPL+P++ ++E + ++++GR+IDL+API
Sbjct: 112 RYFALLMVNSINFDEPEKVKHKVHFDNLTPLYPEERYVMEIDDPEAKDLSGRVIDLVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ++A +I+ NH E+ ++V+LIDERPEEVT+MQRSV+GEVI
Sbjct: 172 GKGQRGLIVAPPRTGKTVLLQNVAKSISANHPESYLLVLLIDERPEEVTDMQRSVKGEVI 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRL E +DV+ILLDSITRL RAYNT +P+SGKVLTGG
Sbjct: 232 SSTFDEPATRHVQVAEMVIEKAKRLAEHGRDVVILLDSITRLGRAYNTTVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+A+KR YPA+++ KSGTR+E+LLI+ LQKI+VLR++L S+ T
Sbjct: 352 VADKRTYPAMDILKSGTRKEDLLIEKADLQKIFVLRRILSSMGNTD 397
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 159/286 (55%), Gaps = 83/286 (29%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++EV + LRKQELMFAI K+ + I G G +EVL DGF FLRS G+NY+ DDI
Sbjct: 23 EMEVVNASTLRKQELMFAILKQLAERDVEIIGQGVVEVLQDGFAFLRSPGANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK-------------- 493
Y+SPSQ+++F L TG +G IR P+ GERYFALL + +N P+
Sbjct: 83 YVSPSQLKKFALRTGDTVEGPIRSPQEGERYFALLMVNSINFDEPEKVKHKVHFDNLTPL 142
Query: 494 ------------------SGKSI------------------------ILQHIAHAITTNH 511
SG+ I +LQ++A +I+ NH
Sbjct: 143 YPEERYVMEIDDPEAKDLSGRVIDLVAPIGKGQRGLIVAPPRTGKTVLLQNVAKSISANH 202
Query: 512 SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA----------------------- 548
E+ ++V+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 203 PESYLLVLLIDERPEEVTDMQRSVKGEVISSTFDEPATRHVQVAEMVIEKAKRLAEHGRD 262
Query: 549 ----LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNT +P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 263 VVILLDSITRLGRAYNTTVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|374814247|ref|ZP_09717984.1| transcription termination factor Rho [Treponema primitia ZAS-1]
Length = 588
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/348 (66%), Positives = 294/348 (84%), Gaps = 3/348 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G I+ GSLE+LPDG+GFLRS ++Y+ DDIY+SPSQIR F L TGD V G+IR
Sbjct: 210 TERGGIIYAYGSLEILPDGYGFLRSPQNSYLPGPDDIYISPSQIRLFALKTGDTVYGQIR 269
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GER+FA+L+++ VN + P +++NR FDNLTPL+P K+L LE + E I+ R+I
Sbjct: 270 SPKEGERFFAMLRVETVNYDDPTVAQNRIPFDNLTPLYPNKILDLE---TTTEGISERVI 326
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L PIGKGQR L+VA P++GK+I++Q IA+AIT NH E +IV+LIDERPEEVT+M+R+
Sbjct: 327 NLFCPIGKGQRALIVAPPRTGKTIMMQKIANAITKNHPEVYLIVLLIDERPEEVTDMERT 386
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VR EVI+STFDE A RHVQV EMVLEKAKRLVE KKDV+ILLDSITRLARAYN +P SG
Sbjct: 387 VRAEVISSTFDEQASRHVQVTEMVLEKAKRLVEHKKDVVILLDSITRLARAYNQTVPMSG 446
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVDSNAL +PKRFFGAARNIEEGGSLTII+TALIETGSRMD+VI+EEFKGTGN+E
Sbjct: 447 KILSGGVDSNALHKPKRFFGAARNIEEGGSLTIISTALIETGSRMDEVIFEEFKGTGNLE 506
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++L+RR++++R++PAIN+ KSGTR+EELL+ D++LQKIW+LRK++ +
Sbjct: 507 INLDRRISDRRLFPAINIKKSGTRKEELLLSDEQLQKIWILRKVINPM 554
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 155/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
L+KQE++F I K T+ G I+ GSLE+LPDG+GFLRS ++Y+ DDIY+SPSQIR
Sbjct: 196 LKKQEIIFIILKAHTERGGIIYAYGSLEILPDGYGFLRSPQNSYLPGPDDIYISPSQIRL 255
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
F L TG G+IR PK GER+FA+L+++ VN
Sbjct: 256 FALKTGDTVYGQIRSPKEGERFFAMLRVETVNYDDPTVAQNRIPFDNLTPLYPNKILDLE 315
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I++Q IA+AIT NH E +IV+LIDE
Sbjct: 316 TTTEGISERVINLFCPIGKGQRALIVAPPRTGKTIMMQKIANAITKNHPEVYLIVLLIDE 375
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+VR EVI+STFDE A L + +LA
Sbjct: 376 RPEEVTDMERTVRAEVISSTFDEQASRHVQVTEMVLEKAKRLVEHKKDVVILLDSITRLA 435
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 436 RAYNQTVPMSGKILSGGVDSNALHKPKRFFGAAR 469
>gi|90420999|ref|ZP_01228903.1| transcription termination factor Rho [Aurantimonas manganoxydans
SI85-9A1]
gi|90334777|gb|EAS48553.1| transcription termination factor Rho [Aurantimonas manganoxydans
SI85-9A1]
Length = 419
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 293/347 (84%), Gaps = 1/347 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +E+L DGF FLRS +NY+ DDIY+SPSQIR+F L TGD VEG IR PK GE
Sbjct: 49 IIGEGVVEILQDGFAFLRSPEANYLPGPDDIYVSPSQIRKFQLKTGDTVEGPIRSPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIES-KENITGRIIDLIAP 126
RYFALLK+ +N + PE + ++ FDNLTPL+P + +E + + K++++ R+IDL+AP
Sbjct: 109 RYFALLKVNTINFDNPEKIRYKSHFDNLTPLYPDERFKMELDEPTGKKDMSARVIDLVAP 168
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
+GKGQRGL+VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV
Sbjct: 169 LGKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEV 228
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHV VAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTG
Sbjct: 229 VSSTFDEPAQRHVAVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTG 288
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R
Sbjct: 289 GVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDR 348
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
++A+KR+YPA+++ KSGTR+E+LL+ LQKI+VLR++L + T
Sbjct: 349 KVADKRIYPAMDILKSGTRKEDLLVPKGDLQKIFVLRRILSPMGTTD 395
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 93/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAH+IT NH E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 178 VAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 237
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 238 QRHVAVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 297
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 298 PKRFFGAAR 306
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 81/122 (66%), Gaps = 2/122 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ P ++A + D+E SV LRKQEL+FAI K+ I G+G +E+L DGF
Sbjct: 6 LKNKSAPELIAFAEENDVENASV--LRKQELLFAILKQLAAQEVEIIGEGVVEILQDGFA 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS +NY+ DDIY+SPSQIR+F L TG +G IR PK GERYFALLK+ +N +
Sbjct: 64 FLRSPEANYLPGPDDIYVSPSQIRKFQLKTGDTVEGPIRSPKEGERYFALLKVNTINFDN 123
Query: 492 PK 493
P+
Sbjct: 124 PE 125
>gi|116328952|ref|YP_798672.1| transcription termination factor Rho [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116330440|ref|YP_800158.1| transcription termination factor Rho [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
gi|116121696|gb|ABJ79739.1| Transcription termination factor Rho [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116124129|gb|ABJ75400.1| Transcription termination factor Rho [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
Length = 481
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 113 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 172
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 173 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 229
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 230 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECTLIVLLIDERPEEVTDMARHVRGEV 289
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 290 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 349
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 350 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 409
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 410 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 455
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 86 LGVENTSGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 145
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 146 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 205
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 206 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECT 265
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 266 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 325
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 326 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 367
>gi|153003606|ref|YP_001377931.1| transcription termination factor Rho [Anaeromyxobacter sp. Fw109-5]
gi|152027179|gb|ABS24947.1| transcription termination factor Rho [Anaeromyxobacter sp. Fw109-5]
Length = 437
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 288/339 (84%), Gaps = 3/339 (0%)
Query: 10 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERY 69
G+G+LEVLPDGFGFLRS +Y+ DDIY+SPSQIRRFNL TGD V G +R PK GERY
Sbjct: 69 GEGTLEVLPDGFGFLRSPDFSYLPGPDDIYVSPSQIRRFNLRTGDTVRGTVRQPKEGERY 128
Query: 70 FALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGK 129
FALLK+ +NGE PE ++ + LFDNLTPL+P + L LE + +T R++DL +PIGK
Sbjct: 129 FALLKVDSINGEPPEENQTKVLFDNLTPLYPTERLSLEHD---PNEMTTRVVDLFSPIGK 185
Query: 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIAS 189
GQR L+V+ P++GK+++LQ++AHA+TTNH E +IV+LIDERPEEVT+M+R+V+GEV+AS
Sbjct: 186 GQRCLIVSPPRAGKTVLLQNMAHAVTTNHPECTLIVLLIDERPEEVTDMERTVKGEVVAS 245
Query: 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVD 249
TFDEPA RHVQVAEMV+EKA+RLVE KKDV+ILLDSITRLARAYN+V+P SGK+L+GGVD
Sbjct: 246 TFDEPATRHVQVAEMVIEKARRLVEHKKDVVILLDSITRLARAYNSVVPPSGKILSGGVD 305
Query: 250 SNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLA 309
SNAL +PKRFFGAARNIEEGGSLTII TAL++TGSRMD+VI+EEFKGTGN E+ L+R++
Sbjct: 306 SNALHKPKRFFGAARNIEEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLDRKMM 365
Query: 310 EKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348
EKR++P +++ KSGTR+EELL+ D L KI++LR+ + +
Sbjct: 366 EKRIFPTMDIGKSGTRKEELLLPADWLSKIYILRQTILN 404
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 169/288 (58%), Gaps = 86/288 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGER------IFGDGSLEVLPDGFGFLRSQGSNYMA 442
LE+ + ++KQ+L+FAI + ++K+ E + G+G+LEVLPDGFGFLRS +Y+
Sbjct: 33 LEIEAAGAMKKQDLIFAILQAQSKVAEEKKEEMEVGGEGTLEVLPDGFGFLRSPDFSYLP 92
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------- 488
DDIY+SPSQIRRFNL TG +G +R PK GERYFALLK+ +N
Sbjct: 93 GPDDIYVSPSQIRRFNLRTGDTVRGTVRQPKEGERYFALLKVDSINGEPPEENQTKVLFD 152
Query: 489 ---------------------------------------VASPKSGKSIILQHIAHAITT 509
V+ P++GK+++LQ++AHA+TT
Sbjct: 153 NLTPLYPTERLSLEHDPNEMTTRVVDLFSPIGKGQRCLIVSPPRAGKTVLLQNMAHAVTT 212
Query: 510 NHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------- 548
NH E +IV+LIDERPEEVT+M+R+V+GEV+ASTFDEPA
Sbjct: 213 NHPECTLIVLLIDERPEEVTDMERTVKGEVVASTFDEPATRHVQVAEMVIEKARRLVEHK 272
Query: 549 ------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN+V+P SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 273 KDVVILLDSITRLARAYNSVVPPSGKILSGGVDSNALHKPKRFFGAAR 320
>gi|251771818|gb|EES52393.1| transcription termination factor Rho [Leptospirillum
ferrodiazotrophum]
Length = 423
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/341 (68%), Positives = 284/341 (83%), Gaps = 3/341 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G LE L DGFGFLRS NY+ DDIY+SPSQIRRFNL TGD + G+IR PK GE
Sbjct: 56 IYGEGVLETLQDGFGFLRSPLYNYLPGPDDIYVSPSQIRRFNLRTGDTIWGQIRPPKEGE 115
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFA+LK++KVN E E+ + + LFDNLTPL+P + + LE N E+++ R+IDL+ PI
Sbjct: 116 RYFAMLKVEKVNFEDSEVGREKILFDNLTPLYPMERIRLENN---PEDLSMRVIDLLTPI 172
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ IA AI NH E +IV+LIDERPEEVT+M R V+GEV+
Sbjct: 173 GKGQRGLIVAPPRTGKTVLLQGIAKAIAKNHPEISLIVLLIDERPEEVTDMIRQVKGEVV 232
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RH+QVAEMVLEKAKRL E +KDV+ILLDSITRLARA+N V P SGKVL+GG
Sbjct: 233 SSTFDEPPQRHIQVAEMVLEKAKRLAESQKDVVILLDSITRLARAFNIVTPPSGKVLSGG 292
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
+DSNALQRPKRFFG+ARNIEEGGSLTIIATALI+TGSRMDDVI+EEFKGTGNME+HL+R
Sbjct: 293 LDSNALQRPKRFFGSARNIEEGGSLTIIATALIDTGSRMDDVIFEEFKGTGNMELHLDRN 352
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348
LA++R++PAIN SGTR+EELL+ D + KIW+LRK + S
Sbjct: 353 LADRRIFPAINATTSGTRKEELLLDKDDINKIWILRKAMNS 393
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 165/306 (53%), Gaps = 88/306 (28%)
Query: 373 KDACMPLV-LAETQTIDL-------EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLE 424
K+ C+ L L E DL + LRKQ+L+FAI + +++ I+G+G LE
Sbjct: 4 KENCVNLAELKEKSIADLTDIAKGYHIEGAVNLRKQDLIFAILQAQSEKNGVIYGEGVLE 63
Query: 425 VLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKI 484
L DGFGFLRS NY+ DDIY+SPSQIRRFNL TG G+IR PK GERYFA+LK+
Sbjct: 64 TLQDGFGFLRSPLYNYLPGPDDIYVSPSQIRRFNLRTGDTIWGQIRPPKEGERYFAMLKV 123
Query: 485 KKVN-----------------------------------------------------VAS 491
+KVN VA
Sbjct: 124 EKVNFEDSEVGREKILFDNLTPLYPMERIRLENNPEDLSMRVIDLLTPIGKGQRGLIVAP 183
Query: 492 PKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--- 548
P++GK+++LQ IA AI NH E +IV+LIDERPEEVT+M R V+GEV++STFDEP
Sbjct: 184 PRTGKTVLLQGIAKAIAKNHPEISLIVLLIDERPEEVTDMIRQVKGEVVSSTFDEPPQRH 243
Query: 549 ------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKR 584
L + +LARA+N V P SGKVL+GG+DSNALQRPKR
Sbjct: 244 IQVAEMVLEKAKRLAESQKDVVILLDSITRLARAFNIVTPPSGKVLSGGLDSNALQRPKR 303
Query: 585 FFGAAR 590
FFG+AR
Sbjct: 304 FFGSAR 309
>gi|71083054|ref|YP_265773.1| transcription termination factor Rho [Candidatus Pelagibacter
ubique HTCC1062]
gi|91762521|ref|ZP_01264486.1| transcription termination factor Rho [Candidatus Pelagibacter
ubique HTCC1002]
gi|71062167|gb|AAZ21170.1| transcription termination factor rho [Candidatus Pelagibacter
ubique HTCC1062]
gi|91718323|gb|EAS84973.1| transcription termination factor Rho [Candidatus Pelagibacter
ubique HTCC1002]
Length = 422
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/347 (65%), Positives = 293/347 (84%), Gaps = 3/347 (0%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
E I G G L++L DGFGFLR+ SNY+A DDIY+SPSQIR+F L TGD VEG +R PK
Sbjct: 46 EEITGAGVLQLLQDGFGFLRAMESNYLAGPDDIYVSPSQIRKFGLRTGDTVEGPVRAPKE 105
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE---RNIESKENITGRIID 122
GERYFALL+++K+N E+PE ++++ FDNLTPL+P K +++E IE K ++T R+ID
Sbjct: 106 GERYFALLQVEKINFEEPEKARHKIAFDNLTPLYPNKQMVMEVETTKIEKKPDLTPRLID 165
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIGKGQR ++++ PK+GK++ILQ IA++I N+ E+ ++V+LIDERPEEVT+M+R+V
Sbjct: 166 LVSPIGKGQRSIIISPPKAGKTMILQSIANSIAKNYPESYLMVLLIDERPEEVTDMKRTV 225
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVI+STFDEPA RHV VAEMV+EKAKRL E KKDV+ILLDSITRL RAYN VIP+SGK
Sbjct: 226 KGEVISSTFDEPASRHVAVAEMVIEKAKRLTEHKKDVVILLDSITRLGRAYNAVIPSSGK 285
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIEEGGSLTII+TALI+TGSRMD+VI+EEFKGTGN E
Sbjct: 286 VLTGGVDANALQRPKRFFGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSET 345
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AE+R+YPAI++ KSGTRREELL D L K+ VLR+++ +
Sbjct: 346 VLDRKIAERRIYPAIDITKSGTRREELLFDKDDLSKMNVLRRIISPM 392
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
++ PK+GK++ILQ IA++I N+ E+ ++V+LIDERPEEVT+M+R+V+GEVI+STFDEPA
Sbjct: 179 ISPPKAGKTMILQSIANSIAKNYPESYLMVLLIDERPEEVTDMKRTVKGEVISSTFDEPA 238
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN VIP+SGKVLTGGVD+NALQR
Sbjct: 239 SRHVAVAEMVIEKAKRLTEHKKDVVILLDSITRLGRAYNAVIPSSGKVLTGGVDANALQR 298
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 299 PKRFFGAAR 307
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q L + + LRKQE++FAI KK + E I G G L++L DGFGFLR+ SNY+A
Sbjct: 17 QAEKLGIENASTLRKQEILFAILKKVAE-KEEITGAGVLQLLQDGFGFLRAMESNYLAGP 75
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
DDIY+SPSQIR+F L TG +G +R PK GERYFALL+++K+N P+ + I
Sbjct: 76 DDIYVSPSQIRKFGLRTGDTVEGPVRAPKEGERYFALLQVEKINFEEPEKARHKI 130
>gi|384214323|ref|YP_005605486.1| transcription termination factor [Bradyrhizobium japonicum USDA 6]
gi|354953219|dbj|BAL05898.1| transcription termination factor [Bradyrhizobium japonicum USDA 6]
Length = 421
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 291/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IVGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +K++ FDNLTPL P + +E + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKAKHKVNFDNLTPLFPNQRFRMEIDDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITHNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDTQVLKKMYVLRRIL 390
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 162/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQEL+FAI K+ I G+G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTMRKQELLFAILKQLALAETDIVGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN---------- 488
PSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 86 PSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKAKHKVNFDNLTPLFPN 145
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IAH+IT NH E
Sbjct: 146 QRFRMEIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITHNHPEC 205
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 206 YLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVI 265
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 266 LLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|410449755|ref|ZP_11303808.1| transcription termination factor Rho [Leptospira sp. Fiocruz
LV3954]
gi|410016512|gb|EKO78591.1| transcription termination factor Rho [Leptospira sp. Fiocruz
LV3954]
gi|456874491|gb|EMF89784.1| transcription termination factor Rho [Leptospira santarosai str.
ST188]
Length = 477
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 109 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 168
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 169 ERFFAMLRVETVNGYTPDVASKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 225
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 226 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEV 285
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 286 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 345
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 346 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 405
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 406 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 451
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 82 LGVENTSGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 141
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 142 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVASKRALFDNLTPLY 201
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 202 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECS 261
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 262 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 321
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 322 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 363
>gi|254456648|ref|ZP_05070077.1| transcription termination factor Rho [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083650|gb|EDZ61076.1| transcription termination factor Rho [Candidatus Pelagibacter sp.
HTCC7211]
Length = 422
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 291/347 (83%), Gaps = 3/347 (0%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
E I G G L++L DGFGFLR+ SNY+ DDIY+SPSQIR+F L TGD VEG +R PK
Sbjct: 46 EEITGAGVLQLLQDGFGFLRAMESNYLPGPDDIYVSPSQIRKFGLRTGDTVEGPVRAPKE 105
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE---RNIESKENITGRIID 122
GERYFALL++ K+N E+PE ++++ FDNLTPL+P K L++E +E K ++T R+ID
Sbjct: 106 GERYFALLQVSKINFEEPEKARHKIAFDNLTPLYPDKQLVMEVETTKVEKKPDLTPRLID 165
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L++PIGKGQR ++++ PK+GK++ILQ IA++I N+ E +IV+LIDERPEEVT+MQR+V
Sbjct: 166 LVSPIGKGQRSIIISPPKAGKTMILQSIANSIAKNYPECYLIVLLIDERPEEVTDMQRTV 225
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
GEVI+STFDEPA RHV VAEMV+EKAKRL E KKDV+ILLDSITRL RAYN VIP+SGK
Sbjct: 226 NGEVISSTFDEPAQRHVAVAEMVIEKAKRLTEHKKDVVILLDSITRLGRAYNAVIPSSGK 285
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIEEGGSLTII+TALI+TGSRMD+VI+EEFKGTGN E
Sbjct: 286 VLTGGVDANALQRPKRFFGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSET 345
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++A+KR+YPAI++ KSGTRREELL + + LQK+ VLR+++ +
Sbjct: 346 VLDRKIADKRIYPAIDITKSGTRREELLFEKNDLQKMNVLRRIIAPM 392
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
++ PK+GK++ILQ IA++I N+ E +IV+LIDERPEEVT+MQR+V GEVI+STFDEPA
Sbjct: 179 ISPPKAGKTMILQSIANSIAKNYPECYLIVLLIDERPEEVTDMQRTVNGEVISSTFDEPA 238
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN VIP+SGKVLTGGVD+NALQR
Sbjct: 239 QRHVAVAEMVIEKAKRLTEHKKDVVILLDSITRLGRAYNAVIPSSGKVLTGGVDANALQR 298
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 299 PKRFFGAAR 307
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Query: 385 QTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASS 444
Q +L + + LRKQE++FAI KK + E I G G L++L DGFGFLR+ SNY+
Sbjct: 17 QAEELGIENASTLRKQEILFAILKKVAE-KEEITGAGVLQLLQDGFGFLRAMESNYLPGP 75
Query: 445 DDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSII 499
DDIY+SPSQIR+F L TG +G +R PK GERYFALL++ K+N P+ + I
Sbjct: 76 DDIYVSPSQIRKFGLRTGDTVEGPVRAPKEGERYFALLQVSKINFEEPEKARHKI 130
>gi|398337536|ref|ZP_10522241.1| transcription termination factor Rho [Leptospira kmetyi serovar
Malaysia str. Bejo-Iso9]
Length = 484
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 116 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 175
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 176 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 232
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 233 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECTLIVLLIDERPEEVTDMARHVRGEV 292
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 293 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 352
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 353 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 412
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 413 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 458
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 89 LGVENTGGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 148
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 149 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 208
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 209 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECT 268
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 269 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 328
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 329 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 370
>gi|421109166|ref|ZP_15569690.1| transcription termination factor Rho [Leptospira kirschneri str.
H2]
gi|410005686|gb|EKO59473.1| transcription termination factor Rho [Leptospira kirschneri str.
H2]
Length = 479
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 111 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 170
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+LK++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 171 ERFFAMLKVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 227
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 228 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEV 287
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 288 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 347
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 348 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 407
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 408 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 453
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 84 LGVENTGGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 143
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+LK++ VN
Sbjct: 144 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLKVETVNGYTPDVAGKRALFDNLTPLY 203
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 204 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECS 263
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 264 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 323
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 324 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 365
>gi|56708488|ref|YP_170384.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89256008|ref|YP_513370.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica LVS]
gi|110670959|ref|YP_667516.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis FSC198]
gi|115314486|ref|YP_763209.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica OSU18]
gi|118497989|ref|YP_899039.1| transcription termination factor Rho [Francisella novicida U112]
gi|156502012|ref|YP_001428077.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|194323212|ref|ZP_03056996.1| transcription termination factor Rho [Francisella novicida FTE]
gi|208779602|ref|ZP_03246947.1| transcription termination factor Rho [Francisella novicida FTG]
gi|254367354|ref|ZP_04983380.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica 257]
gi|254368839|ref|ZP_04984852.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica FSC022]
gi|254371114|ref|ZP_04987116.1| hypothetical protein FTBG_00874 [Francisella tularensis subsp.
tularensis FSC033]
gi|254373341|ref|ZP_04988829.1| transcription termination factor Rho [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374803|ref|ZP_04990284.1| hypothetical protein FTDG_00979 [Francisella novicida GA99-3548]
gi|254875335|ref|ZP_05248045.1| transcription termination factor rho [Francisella tularensis subsp.
tularensis MA00-2987]
gi|290953178|ref|ZP_06557799.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica URFT1]
gi|379717718|ref|YP_005306054.1| Transcription termination factor Rho [Francisella tularensis subsp.
tularensis TIGB03]
gi|379726322|ref|YP_005318508.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis TI0902]
gi|385793382|ref|YP_005826358.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|385795159|ref|YP_005831565.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis NE061598]
gi|387825057|ref|YP_005824528.1| Transcription termination factor Rho [Francisella cf. novicida
3523]
gi|421756093|ref|ZP_16193021.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 80700075]
gi|422938451|ref|YP_007011598.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica FSC200]
gi|54113461|gb|AAV29364.1| NT02FT1992 [synthetic construct]
gi|56604980|emb|CAG46079.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89143839|emb|CAJ79050.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica LVS]
gi|110321292|emb|CAL09462.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis FSC198]
gi|115129385|gb|ABI82572.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica OSU18]
gi|118423895|gb|ABK90285.1| transcription termination factor Rho [Francisella novicida U112]
gi|134253170|gb|EBA52264.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica 257]
gi|151569354|gb|EDN35008.1| hypothetical protein FTBG_00874 [Francisella tularensis subsp.
tularensis FSC033]
gi|151571067|gb|EDN36721.1| transcription termination factor Rho [Francisella novicida
GA99-3549]
gi|151572522|gb|EDN38176.1| hypothetical protein FTDG_00979 [Francisella novicida GA99-3548]
gi|156252615|gb|ABU61121.1| transcription termination factor [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157121760|gb|EDO65930.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica FSC022]
gi|194322576|gb|EDX20056.1| transcription termination factor Rho [Francisella tularensis subsp.
novicida FTE]
gi|208744563|gb|EDZ90862.1| transcription termination factor Rho [Francisella novicida FTG]
gi|254841334|gb|EET19770.1| transcription termination factor rho [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159694|gb|ADA79085.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis NE061598]
gi|332184523|gb|AEE26777.1| Transcription termination factor Rho [Francisella cf. novicida
3523]
gi|332678707|gb|AEE87836.1| Transcription termination factor Rho [Francisella cf. novicida Fx1]
gi|377827771|gb|AFB81019.1| Transcription termination factor Rho [Francisella tularensis subsp.
tularensis TI0902]
gi|377829395|gb|AFB79474.1| Transcription termination factor Rho [Francisella tularensis subsp.
tularensis TIGB03]
gi|407293602|gb|AFT92508.1| transcription termination factor Rho [Francisella tularensis subsp.
holarctica FSC200]
gi|409085801|gb|EKM85931.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 80700075]
Length = 420
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/342 (67%), Positives = 291/342 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+G+G LEVL DG+GFLRS S+Y AS DDIY+SP+ IR+ NL TGD + G+IR P+
Sbjct: 45 GEDIYGEGILEVLQDGYGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPR 104
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
E+YFA+ I VN + PEL++ + LF+NLTP + K+ L +E S E+IT R+IDL
Sbjct: 105 ENEKYFAVKHIDSVNFDSPELARKKILFENLTPEYAKERLTMEIGNGSNEDITARVIDLA 164
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQRGL+VA PK+GK+I++Q+IA +I NH E +I++LIDERPEEVTEMQRSVRG
Sbjct: 165 APFGKGQRGLIVAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRG 224
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQ+AE+V+EKAKRLVE K+DV+ILLDSITRLARAYNTV PASG+VL
Sbjct: 225 EVVASTFDEPAARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVL 284
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
+GGV++NALQ+PKRFFGAARN EGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNME+HL
Sbjct: 285 SGGVEANALQKPKRFFGAARNTAEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELHL 344
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R++AE+RV+PAI+ ++SGTRREELL ++LQK+WVLRK+L
Sbjct: 345 DRKIAERRVFPAISFDRSGTRREELLTTPEELQKLWVLRKIL 386
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA +I NH E +I++LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 176 VAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRGEVVASTFDEPA 235
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASG+VL+GGV++NALQ+
Sbjct: 236 ARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVLSGGVEANALQK 295
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 296 PKRFFGAAR 304
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 3/131 (2%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + ++ Q++DLE R RKQEL+F+I K GE I+G+G LEVL DG
Sbjct: 4 NELKYKSVNELMDIAQSLDLES---LRARKQELIFSILKYHADKGEDIYGEGILEVLQDG 60
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
+GFLRS S+Y AS DDIY+SP+ IR+ NL TG G+IR P+ E+YFA+ I VN
Sbjct: 61 YGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPRENEKYFAVKHIDSVNF 120
Query: 490 ASPKSGKSIIL 500
SP+ + IL
Sbjct: 121 DSPELARKKIL 131
>gi|187932097|ref|YP_001892082.1| transcription termination factor Rho [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187713006|gb|ACD31303.1| transcription termination factor Rho [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 420
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/342 (67%), Positives = 291/342 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+G+G LEVL DG+GFLRS S+Y AS DDIY+SP+ IR+ NL TGD + G+IR P+
Sbjct: 45 GEDIYGEGILEVLQDGYGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPR 104
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
E+YFA+ I VN + PEL++ + LF+NLTP + K+ L +E S E+IT R+IDL
Sbjct: 105 ENEKYFAVKHIDSVNFDSPELARKKILFENLTPEYTKERLTMEIGNGSNEDITARVIDLA 164
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQRGL+VA PK+GK+I++Q+IA +I NH E +I++LIDERPEEVTEMQRSVRG
Sbjct: 165 APFGKGQRGLIVAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRG 224
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQ+AE+V+EKAKRLVE K+DV+ILLDSITRLARAYNTV PASG+VL
Sbjct: 225 EVVASTFDEPAARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVL 284
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
+GGV++NALQ+PKRFFGAARN EGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNME+HL
Sbjct: 285 SGGVEANALQKPKRFFGAARNTAEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELHL 344
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R++AE+RV+PAI+ ++SGTRREELL ++LQK+WVLRK+L
Sbjct: 345 DRKIAERRVFPAISFDRSGTRREELLTTPEELQKLWVLRKIL 386
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA +I NH E +I++LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 176 VAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRGEVVASTFDEPA 235
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASG+VL+GGV++NALQ+
Sbjct: 236 ARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVLSGGVEANALQK 295
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 296 PKRFFGAAR 304
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 3/131 (2%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + ++ Q++DLE R RKQEL+F+I K GE I+G+G LEVL DG
Sbjct: 4 NELKYKSVNELMDIAQSLDLES---LRARKQELIFSILKYHADKGEDIYGEGILEVLQDG 60
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
+GFLRS S+Y AS DDIY+SP+ IR+ NL TG G+IR P+ E+YFA+ I VN
Sbjct: 61 YGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPRENEKYFAVKHIDSVNF 120
Query: 490 ASPKSGKSIIL 500
SP+ + IL
Sbjct: 121 DSPELARKKIL 131
>gi|298530965|ref|ZP_07018366.1| transcription termination factor Rho [Desulfonatronospira
thiodismutans ASO3-1]
gi|298508988|gb|EFI32893.1| transcription termination factor Rho [Desulfonatronospira
thiodismutans ASO3-1]
Length = 415
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/343 (65%), Positives = 288/343 (83%), Gaps = 3/343 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
+ G+G LE+LPDGFGFLRS +YM DDIY+SPSQIR+F L TGD V G+IR PK GE
Sbjct: 49 VSGEGVLEILPDGFGFLRSPMYSYMPGPDDIYVSPSQIRKFGLRTGDVVSGQIRPPKEGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALL++ +V +P SK+ LFDNLTP++P K +LE EN++ R++DL++P+
Sbjct: 109 RYFALLRVNQVGFGEPSESKSLVLFDNLTPIYPDKRFVLE---NGAENLSSRVLDLLSPV 165
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
G GQRGL+VA P++GK+++LQ IA++I N + MIV+LIDERPEEVT+M+R+V EV+
Sbjct: 166 GTGQRGLIVAPPRTGKTVLLQSIANSINANDPDVFMIVLLIDERPEEVTDMERTVDAEVV 225
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEP RHVQVAEMVLEKAKRLVE KKDV+ILLDSITRL RAYNT+ P+SG+VL+GG
Sbjct: 226 SSTFDEPPQRHVQVAEMVLEKAKRLVERKKDVVILLDSITRLGRAYNTITPSSGRVLSGG 285
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
+DSNALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGNME++L+R
Sbjct: 286 LDSNALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDRH 345
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
LA+KRV+PAI++N+SGTR+E+LL+ +D L K+W+LRK+L +
Sbjct: 346 LADKRVFPAIDINRSGTRKEDLLLSEDVLNKVWILRKVLAPMN 388
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/281 (41%), Positives = 155/281 (55%), Gaps = 80/281 (28%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449
E+ + +RKQEL+FAI + + G+G LE+LPDGFGFLRS +YM DDIY+
Sbjct: 22 EIENPSGMRKQELIFAILQSCASQNGTVSGEGVLEILPDGFGFLRSPMYSYMPGPDDIYV 81
Query: 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--------------------- 488
SPSQIR+F L TG + G+IR PK GERYFALL++ +V
Sbjct: 82 SPSQIRKFGLRTGDVVSGQIRPPKEGERYFALLRVNQVGFGEPSESKSLVLFDNLTPIYP 141
Query: 489 --------------------------------VASPKSGKSIILQHIAHAITTNHSEAIM 516
VA P++GK+++LQ IA++I N + M
Sbjct: 142 DKRFVLENGAENLSSRVLDLLSPVGTGQRGLIVAPPRTGKTVLLQSIANSINANDPDVFM 201
Query: 517 IVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------L 549
IV+LIDERPEEVT+M+R+V EV++STFDEP L
Sbjct: 202 IVLLIDERPEEVTDMERTVDAEVVSSTFDEPPQRHVQVAEMVLEKAKRLVERKKDVVILL 261
Query: 550 SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +L RAYNT+ P+SG+VL+GG+DSNALQRPKRFFGAAR
Sbjct: 262 DSITRLGRAYNTITPSSGRVLSGGLDSNALQRPKRFFGAAR 302
>gi|359685230|ref|ZP_09255231.1| transcription termination factor Rho [Leptospira santarosai str.
2000030832]
Length = 477
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 109 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 168
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 169 ERFFAMLRVETVNGYTPDVASKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 225
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 226 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEV 285
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 286 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 345
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 346 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 405
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 406 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 451
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 82 LGVENTSGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 141
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 142 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVASKRALFDNLTPLY 201
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 202 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECS 261
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 262 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 321
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 322 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 363
>gi|418744047|ref|ZP_13300406.1| transcription termination factor Rho [Leptospira santarosai str.
CBC379]
gi|418751612|ref|ZP_13307896.1| transcription termination factor Rho [Leptospira santarosai str.
MOR084]
gi|421111670|ref|ZP_15572143.1| transcription termination factor Rho [Leptospira santarosai str.
JET]
gi|422005230|ref|ZP_16352425.1| transcription termination factor Rho [Leptospira santarosai serovar
Shermani str. LT 821]
gi|409968085|gb|EKO35898.1| transcription termination factor Rho [Leptospira santarosai str.
MOR084]
gi|410795442|gb|EKR93339.1| transcription termination factor Rho [Leptospira santarosai str.
CBC379]
gi|410802866|gb|EKS09011.1| transcription termination factor Rho [Leptospira santarosai str.
JET]
gi|417256085|gb|EKT85525.1| transcription termination factor Rho [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 477
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 109 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 168
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 169 ERFFAMLRVETVNGYTPDVASKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 225
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 226 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEV 285
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 286 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 345
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 346 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 405
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 406 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 451
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 82 LGVENTSGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 141
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 142 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVASKRALFDNLTPLY 201
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 202 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECS 261
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 262 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 321
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 322 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 363
>gi|134301525|ref|YP_001121493.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751291|ref|ZP_16188343.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis AS_713]
gi|421753148|ref|ZP_16190149.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 831]
gi|421756876|ref|ZP_16193769.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 80700103]
gi|421758739|ref|ZP_16195581.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 70102010]
gi|424674007|ref|ZP_18110934.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 70001275]
gi|134049302|gb|ABO46373.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409088069|gb|EKM88151.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 831]
gi|409088398|gb|EKM88470.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis AS_713]
gi|409091782|gb|EKM91769.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 70102010]
gi|409093148|gb|EKM93104.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 80700103]
gi|417435363|gb|EKT90269.1| transcription termination factor Rho [Francisella tularensis subsp.
tularensis 70001275]
Length = 420
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/342 (67%), Positives = 291/342 (85%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
GE I+G+G LEVL DG+GFLRS S+Y AS DDIY+SP+ IR+ NL TGD + G+IR P+
Sbjct: 45 GEDIYGEGILEVLQDGYGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPR 104
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
E+YFA+ I VN + PEL++ + LF+NLTP + K+ L +E S E+IT R+IDL
Sbjct: 105 ENEKYFAVKHIDSVNFDSPELARKKILFENLTPEYAKERLTMEIGNGSNEDITARVIDLA 164
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP GKGQRGL+VA PK+GK+I++Q+IA +I NH E +I++LIDERPEEVTEMQRSVRG
Sbjct: 165 APFGKGQRGLIVAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRG 224
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV+ASTFDEPA RHVQ+AE+V+EKAKRLVE K+DV+ILLDSITRLARAYNTV PASG+VL
Sbjct: 225 EVVASTFDEPAARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVL 284
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
+GGV++NALQ+PKRFFGAARN EGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNME+HL
Sbjct: 285 SGGVEANALQKPKRFFGAARNTAEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELHL 344
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R++AE+RV+PAI+ ++SGTRREELL ++LQK+WVLRK+L
Sbjct: 345 DRKIAERRVFPAISFDRSGTRREELLTTPEELQKLWVLRKIL 386
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I++Q+IA +I NH E +I++LIDERPEEVTEMQRSVRGEV+ASTFDEPA
Sbjct: 176 VAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRGEVVASTFDEPA 235
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV PASG+VL+GGV++NALQ+
Sbjct: 236 ARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVLSGGVEANALQK 295
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 296 PKRFFGAAR 304
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 3/131 (2%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
N LK + ++ Q++DLE R RKQEL+F+I K GE I+G+G LEVL DG
Sbjct: 4 NELKYKSVNELMDIVQSLDLES---LRARKQELIFSILKYHADKGEDIYGEGILEVLQDG 60
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
+GFLRS S+Y AS DDIY+SP+ IR+ NL TG G+IR P+ E+YFA+ I VN
Sbjct: 61 YGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPRENEKYFAVKHIDSVNF 120
Query: 490 ASPKSGKSIIL 500
SP+ + IL
Sbjct: 121 DSPELARKKIL 131
>gi|118591443|ref|ZP_01548841.1| transcription termination factor Rho [Stappia aggregata IAM 12614]
gi|118436115|gb|EAV42758.1| transcription termination factor Rho [Stappia aggregata IAM 12614]
Length = 421
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/339 (66%), Positives = 290/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF+L TGD VEG+IR PK GE
Sbjct: 52 IIGEGVVEVLQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E P+ ++++ FDNLTPL+P + +E + ++++ R+IDL+AP+
Sbjct: 112 RYFALLKVNTINFEDPDKARHKVHFDNLTPLYPDERFRMEIEDPTIKDLSSRVIDLVAPL 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+ A P++GK++ LQ+IA +ITTNH E +IV+LIDERPEEVT+MQR+V GEV+
Sbjct: 172 GKGQRALITAPPRTGKTVFLQNIAKSITTNHPECYLIVLLIDERPEEVTDMQRTVDGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRL E +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAARHVQVAEMVIEKAKRLTEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KRVYPAI++ +SGTR+EELL+ ++L+K +VLR++L
Sbjct: 352 ISDKRVYPAIDIQRSGTRKEELLVPAERLKKTFVLRRIL 390
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 90/128 (70%), Gaps = 27/128 (21%)
Query: 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA- 548
A P++GK++ LQ+IA +ITTNH E +IV+LIDERPEEVT+MQR+V GEV++STFDEPA
Sbjct: 181 APPRTGKTVFLQNIAKSITTNHPECYLIVLLIDERPEEVTDMQRTVDGEVVSSTFDEPAA 240
Query: 549 --------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRP 582
L + +L RAYNTV+P+SGKVLTGGVD+NALQRP
Sbjct: 241 RHVQVAEMVIEKAKRLTEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP 300
Query: 583 KRFFGAAR 590
KRFFGAAR
Sbjct: 301 KRFFGAAR 308
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 74/109 (67%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LEV + +RKQELMFAI K I G+G +EVL DGFGFLRS +NY+ DDI
Sbjct: 23 ELEVENASTMRKQELMFAILKNLAAQDVEIIGEGVVEVLQDGFGFLRSPDANYLPGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
Y+SPSQIRRF+L TG +G+IR PK GERYFALLK+ +N P +
Sbjct: 83 YVSPSQIRRFSLRTGDTVEGQIRSPKEGERYFALLKVNTINFEDPDKAR 131
>gi|297170421|gb|ADI21453.1| transcription termination factor [uncultured gamma proteobacterium
HF0070_10G19]
Length = 423
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/333 (68%), Positives = 286/333 (85%)
Query: 14 LEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALL 73
LE+L DGFGFLRS G++Y S+DDIY+SPSQ+R+F L GD V G+IR PK+ ERYFAL+
Sbjct: 55 LEILNDGFGFLRSTGNSYCTSADDIYVSPSQVRKFALRKGDEVHGKIRPPKDQERYFALV 114
Query: 74 KIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRG 133
+I +NGE P +KN+ LF+NLTPL P L LE+ S +I+ R+IDL APIGKGQRG
Sbjct: 115 QIDTINGETPNKAKNKILFENLTPLFPNFRLSLEQGSGSNADISSRVIDLTAPIGKGQRG 174
Query: 134 LLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDE 193
L+V+ PK+GK+++LQ IAH+IT N+ + +IV+LIDERPEEVT+M R+VRGEV+ASTFDE
Sbjct: 175 LIVSPPKAGKTLMLQSIAHSITKNNPDVELIVLLIDERPEEVTDMSRTVRGEVVASTFDE 234
Query: 194 PAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNAL 253
P RHVQVA+MV+EKAKRL E KKDV+ILLDSITRL RAYN+V PASGK+L+GGVDSNAL
Sbjct: 235 PPSRHVQVADMVIEKAKRLTEHKKDVVILLDSITRLGRAYNSVQPASGKILSGGVDSNAL 294
Query: 254 QRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRV 313
+RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+HLER +AEKR+
Sbjct: 295 ERPKRFFGAARNLEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEIHLERNIAEKRI 354
Query: 314 YPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+PAIN+ +SGTRRE+LL D++LQ++ +LRKLL
Sbjct: 355 FPAINIRRSGTRREDLLTTDEELQRMIILRKLL 387
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 89/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ IAH+IT N+ + +IV+LIDERPEEVT+M R+VRGEV+ASTFDEP
Sbjct: 177 VSPPKAGKTLMLQSIAHSITKNNPDVELIVLLIDERPEEVTDMSRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYN+V PASGK+L+GGVDSNAL+R
Sbjct: 237 SRHVQVADMVIEKAKRLTEHKKDVVILLDSITRLGRAYNSVQPASGKILSGGVDSNALER 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 79/113 (69%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L + V RL+KQ+++F IFK++ G I G G LE+L DGFGFLRS G++Y S+DDI
Sbjct: 20 ELGIQDVGRLKKQDIIFRIFKQQAGDGIDILGGGVLEILNDGFGFLRSTGNSYCTSADDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQ+R+F L G G+IR PK+ ERYFAL++I +N +P K+ IL
Sbjct: 80 YVSPSQVRKFALRKGDEVHGKIRPPKDQERYFALVQIDTINGETPNKAKNKIL 132
>gi|27375746|ref|NP_767275.1| transcription termination factor Rho [Bradyrhizobium japonicum USDA
110]
gi|27348884|dbj|BAC45900.1| transcription termination factor [Bradyrhizobium japonicum USDA
110]
Length = 421
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 291/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IVGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +K++ FDNLTPL P + +E + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKAKHKVNFDNLTPLFPNQRFRMEIDDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITHNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDPQVLKKMYVLRRIL 390
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 163/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQEL+FAI K+ + I G+G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTMRKQELLFAILKQLSLAETDIVGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN---------- 488
PSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 86 PSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKAKHKVNFDNLTPLFPN 145
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IAH+IT NH E
Sbjct: 146 QRFRMEIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITHNHPEC 205
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 206 YLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVI 265
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 266 LLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|421100595|ref|ZP_15561218.1| transcription termination factor Rho [Leptospira borgpetersenii
str. 200901122]
gi|410796398|gb|EKR98534.1| transcription termination factor Rho [Leptospira borgpetersenii
str. 200901122]
Length = 483
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 115 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 174
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 175 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 231
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 232 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECALIVLLIDERPEEVTDMARHVRGEV 291
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 292 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 351
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 352 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 411
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 412 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 457
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 88 LGVENTSGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 147
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 148 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 207
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 208 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECA 267
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 268 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 327
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 328 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 369
>gi|349700739|ref|ZP_08902368.1| transcription termination factor Rho [Gluconacetobacter europaeus
LMG 18494]
Length = 436
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/362 (64%), Positives = 289/362 (79%), Gaps = 18/362 (4%)
Query: 6 ERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKN 65
+ I+GDG+LE+L DGFGFLRS +NY+ DDIY+SPSQ+RRF L TGD VEG+IR P++
Sbjct: 47 QAIYGDGTLEILSDGFGFLRSPEANYLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRD 106
Query: 66 GERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE------------------ 107
GERYFALLK+ +N E PE + R FDNLTPL+P++ L +E
Sbjct: 107 GERYFALLKVNAINFEPPEAVRQRINFDNLTPLYPERRLKMEVENSAVGGAADVPTNGKG 166
Query: 108 RNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167
+ + T R+IDL++PIG GQR L+VA P++GK+++LQ IA +I+ NH E +IV+L
Sbjct: 167 KGKTPNRDFTSRVIDLVSPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLL 226
Query: 168 IDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSIT 227
IDERPEEVT+M RSVRGEV++STFDEPA RHVQV EMVLEKAKRLVE K+DV+ILLDSIT
Sbjct: 227 IDERPEEVTDMARSVRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSIT 286
Query: 228 RLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD 287
RLARA NTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD
Sbjct: 287 RLARADNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMD 346
Query: 288 DVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY 347
+VI+EEFKGTGN E+ L+R+LA+KR +PAI++ KSGTR+EELL+ L K+WVLR++L
Sbjct: 347 EVIFEEFKGTGNSELILDRKLADKRTFPAIDITKSGTRKEELLVDRADLAKMWVLRRILA 406
Query: 348 SL 349
+
Sbjct: 407 PM 408
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ IA +I+ NH E +IV+LIDERPEEVT+M RSVRGEV++STFDEPA
Sbjct: 195 VAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGEVVSSTFDEPA 254
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARA NTV+P+SGKVLTGGVD+NALQR
Sbjct: 255 TRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARADNTVVPSSGKVLTGGVDANALQR 314
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 315 PKRFFGAAR 323
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 380 VLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSN 439
+LA +++++E + LRKQELMF I K + I+GDG+LE+L DGFGFLRS +N
Sbjct: 14 LLAYAESLNIE--NASSLRKQELMFTILKTLADNDQAIYGDGTLEILSDGFGFLRSPEAN 71
Query: 440 YMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
Y+ DDIY+SPSQ+RRF L TG +G+IR P++GERYFALLK+ +N P++
Sbjct: 72 YLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRDGERYFALLKVNAINFEPPEA 126
>gi|42527011|ref|NP_972109.1| transcription termination factor Rho [Treponema denticola ATCC
35405]
gi|422342006|ref|ZP_16422946.1| transcription termination factor Rho [Treponema denticola F0402]
gi|449111936|ref|ZP_21748491.1| transcription termination factor Rho [Treponema denticola ATCC
33521]
gi|449113260|ref|ZP_21749775.1| transcription termination factor Rho [Treponema denticola ATCC
35404]
gi|41817435|gb|AAS12020.1| transcription termination factor Rho [Treponema denticola ATCC
35405]
gi|325474074|gb|EGC77262.1| transcription termination factor Rho [Treponema denticola F0402]
gi|448956217|gb|EMB36978.1| transcription termination factor Rho [Treponema denticola ATCC
33521]
gi|448960840|gb|EMB41549.1| transcription termination factor Rho [Treponema denticola ATCC
35404]
Length = 548
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/348 (66%), Positives = 292/348 (83%), Gaps = 3/348 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR FNL TGD V G+IR
Sbjct: 170 TNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRLFNLKTGDTVYGQIR 229
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALL+++ VN ++P S+ R FDNLTPL+P++ L LE + + I+ RI+
Sbjct: 230 SPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPREKLNLET---TTQEISTRIM 286
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L PIGKGQRGL+VA P++GK+I+LQ IA+AIT NH E +IV+LIDERPEEVT+M+R+
Sbjct: 287 NLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDERPEEVTDMERT 346
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V EVI+STFDE A RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYN +P SG
Sbjct: 347 VNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNQTMPTSG 406
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVDSN+L +PKRFFGAARNIEEGGSLTIIATALIETGS+MD+VI+EEFKGTGNME
Sbjct: 407 KVLSGGVDSNSLHKPKRFFGAARNIEEGGSLTIIATALIETGSKMDEVIFEEFKGTGNME 466
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
V+L+R+L+++R++PAIN+ +SGTR+EELL+ + ++Q +W+LRK + S+
Sbjct: 467 VNLDRKLSDRRLFPAINIKRSGTRKEELLLTEAEMQLMWILRKFISSM 514
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 154/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++KQ++++ I K T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR
Sbjct: 156 MKKQDVIYHILKNHTNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRL 215
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GERYFALL+++ VN
Sbjct: 216 FNLKTGDTVYGQIRSPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPREKLNLE 275
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I+LQ IA+AIT NH E +IV+LIDE
Sbjct: 276 TTTQEISTRIMNLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDE 335
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V EVI+STFDE A L + +LA
Sbjct: 336 RPEEVTDMERTVNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLA 395
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGKVL+GGVDSN+L +PKRFFGAAR
Sbjct: 396 RAYNQTMPTSGKVLSGGVDSNSLHKPKRFFGAAR 429
>gi|398821394|ref|ZP_10579858.1| transcription termination factor Rho [Bradyrhizobium sp. YR681]
gi|398227922|gb|EJN14080.1| transcription termination factor Rho [Bradyrhizobium sp. YR681]
Length = 421
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 290/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IVGQGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE +K++ FDNLTPL P + +E + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKAKHKVNFDNLTPLFPNQRFRMEIDDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITHNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDPQVLKKMYVLRRIL 390
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 161/283 (56%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQEL+FAI K+ I G G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTMRKQELLFAILKQLALAETDIVGQGVVEVLSDGFGFLRSPDANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN---------- 488
PSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 86 PSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKAKHKVNFDNLTPLFPN 145
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IAH+IT NH E
Sbjct: 146 QRFRMEIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITHNHPEC 205
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 206 YLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVI 265
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 266 LLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|308271579|emb|CBX28187.1| Transcription termination factor [uncultured Desulfobacterium sp.]
Length = 402
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/345 (67%), Positives = 298/345 (86%), Gaps = 3/345 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+G+G+LE+LPDGFGFLR+ NY+ DDIY+SPSQIRRFNL TGD V G+IR PK E
Sbjct: 36 IYGEGTLEILPDGFGFLRAPSYNYLPGPDDIYVSPSQIRRFNLRTGDIVSGQIRQPKESE 95
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PE+++++ LFDNLTPL+P + + +E + EN + RI+DL+ PI
Sbjct: 96 RYFALLKVEAVNYEDPEIARDKILFDNLTPLYPNRKINIEND---SENYSMRIMDLMIPI 152
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
G GQRGL+V+ P++GK+++LQ+IA+++ +H E + V+LIDERPEEVT+M+R+V+ EVI
Sbjct: 153 GFGQRGLIVSPPRAGKTMLLQNIANSVIASHKEVVPFVLLIDERPEEVTDMERNVKAEVI 212
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYN+V+P SGK+L+GG
Sbjct: 213 SSTFDEPAERHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNSVMPPSGKILSGG 272
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGNME+ L+R+
Sbjct: 273 VDSNALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIQLDRK 332
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
LA+KRV+PAI++ KSGTR+EELL+ ++ L ++W+LRKLL SL T
Sbjct: 333 LADKRVFPAIDIKKSGTRKEELLLSEETLNRVWILRKLLSSLNPT 377
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 164/282 (58%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L ++ +RKQEL+FA+ + + + I+G+G+LE+LPDGFGFLR+ NY+ DDIY
Sbjct: 8 LNIDGAAGMRKQELIFALIQSQIEKNGLIYGEGTLEILPDGFGFLRAPSYNYLPGPDDIY 67
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRFNL TG + G+IR PK ERYFALLK++ VN
Sbjct: 68 VSPSQIRRFNLRTGDIVSGQIRQPKESERYFALLKVEAVNYEDPEIARDKILFDNLTPLY 127
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
V+ P++GK+++LQ+IA+++ +H E +
Sbjct: 128 PNRKINIENDSENYSMRIMDLMIPIGFGQRGLIVSPPRAGKTMLLQNIANSVIASHKEVV 187
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
V+LIDERPEEVT+M+R+V+ EVI+STFDEPA
Sbjct: 188 PFVLLIDERPEEVTDMERNVKAEVISSTFDEPAERHVQVAEMVIEKAKRLVEHKKDVIIL 247
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN+V+P SGK+L+GGVDSNALQRPKRFFGAAR
Sbjct: 248 LDSITRLARAYNSVMPPSGKILSGGVDSNALQRPKRFFGAAR 289
>gi|24213721|ref|NP_711202.1| transcription termination factor Rho [Leptospira interrogans
serovar Lai str. 56601]
gi|386073302|ref|YP_005987619.1| transcription termination factor Rho [Leptospira interrogans
serovar Lai str. IPAV]
gi|417764960|ref|ZP_12412927.1| transcription termination factor Rho [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|418698649|ref|ZP_13259622.1| transcription termination factor Rho [Leptospira interrogans
serovar Bataviae str. L1111]
gi|421119202|ref|ZP_15579527.1| transcription termination factor Rho [Leptospira interrogans str.
Brem 329]
gi|24194539|gb|AAN48220.1| transcription termination factor Rho [Leptospira interrogans
serovar Lai str. 56601]
gi|353457091|gb|AER01636.1| transcription termination factor Rho [Leptospira interrogans
serovar Lai str. IPAV]
gi|400353404|gb|EJP05580.1| transcription termination factor Rho [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|410348150|gb|EKO98988.1| transcription termination factor Rho [Leptospira interrogans str.
Brem 329]
gi|410762348|gb|EKR28513.1| transcription termination factor Rho [Leptospira interrogans
serovar Bataviae str. L1111]
Length = 482
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 114 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 173
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 174 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 230
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 231 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEV 290
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 291 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 350
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 351 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 410
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 411 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 456
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 87 LGVENTGGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 146
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 147 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 206
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 207 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECS 266
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 267 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 326
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 327 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 368
>gi|417763524|ref|ZP_12411502.1| transcription termination factor Rho [Leptospira interrogans str.
2002000624]
gi|417769962|ref|ZP_12417876.1| transcription termination factor Rho [Leptospira interrogans
serovar Pomona str. Pomona]
gi|417776825|ref|ZP_12424658.1| transcription termination factor Rho [Leptospira interrogans str.
2002000621]
gi|417783528|ref|ZP_12431247.1| transcription termination factor Rho [Leptospira interrogans str.
C10069]
gi|418667072|ref|ZP_13228487.1| transcription termination factor Rho [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418671151|ref|ZP_13232505.1| transcription termination factor Rho [Leptospira interrogans str.
2002000623]
gi|418681098|ref|ZP_13242332.1| transcription termination factor Rho [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418692847|ref|ZP_13253917.1| transcription termination factor Rho [Leptospira interrogans str.
FPW2026]
gi|418706024|ref|ZP_13266875.1| transcription termination factor Rho [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418709903|ref|ZP_13270689.1| transcription termination factor Rho [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418715838|ref|ZP_13275937.1| transcription termination factor Rho [Leptospira interrogans str.
UI 08452]
gi|418727662|ref|ZP_13286250.1| transcription termination factor Rho [Leptospira interrogans str.
UI 12621]
gi|418728073|ref|ZP_13286653.1| transcription termination factor Rho [Leptospira interrogans str.
UI 12758]
gi|421115175|ref|ZP_15575584.1| transcription termination factor Rho [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|421127461|ref|ZP_15587685.1| transcription termination factor Rho [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421134018|ref|ZP_15594160.1| transcription termination factor Rho [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|400327201|gb|EJO79456.1| transcription termination factor Rho [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400357182|gb|EJP13322.1| transcription termination factor Rho [Leptospira interrogans str.
FPW2026]
gi|409940730|gb|EKN86369.1| transcription termination factor Rho [Leptospira interrogans str.
2002000624]
gi|409948215|gb|EKN98205.1| transcription termination factor Rho [Leptospira interrogans
serovar Pomona str. Pomona]
gi|409953392|gb|EKO07892.1| transcription termination factor Rho [Leptospira interrogans str.
C10069]
gi|409959020|gb|EKO22797.1| transcription termination factor Rho [Leptospira interrogans str.
UI 12621]
gi|410013251|gb|EKO71333.1| transcription termination factor Rho [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410021756|gb|EKO88539.1| transcription termination factor Rho [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410435551|gb|EKP84683.1| transcription termination factor Rho [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410573503|gb|EKQ36552.1| transcription termination factor Rho [Leptospira interrogans str.
2002000621]
gi|410581820|gb|EKQ49627.1| transcription termination factor Rho [Leptospira interrogans str.
2002000623]
gi|410757147|gb|EKR18762.1| transcription termination factor Rho [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410764329|gb|EKR35045.1| transcription termination factor Rho [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410770138|gb|EKR45365.1| transcription termination factor Rho [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410777118|gb|EKR57086.1| transcription termination factor Rho [Leptospira interrogans str.
UI 12758]
gi|410788233|gb|EKR81957.1| transcription termination factor Rho [Leptospira interrogans str.
UI 08452]
gi|455670460|gb|EMF35436.1| transcription termination factor Rho [Leptospira interrogans
serovar Pomona str. Fox 32256]
gi|455793044|gb|EMF44772.1| transcription termination factor Rho [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456822487|gb|EMF70957.1| transcription termination factor Rho [Leptospira interrogans
serovar Canicola str. LT1962]
gi|456968593|gb|EMG09772.1| transcription termination factor Rho [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
Length = 482
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 114 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 173
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 174 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 230
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 231 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEV 290
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 291 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 350
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 351 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 410
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 411 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 456
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 87 LGVENTGGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 146
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 147 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 206
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 207 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECS 266
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 267 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 326
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 327 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 368
>gi|254295493|ref|YP_003061516.1| transcription termination factor Rho [Hirschia baltica ATCC 49814]
gi|254044024|gb|ACT60819.1| transcription termination factor Rho [Hirschia baltica ATCC 49814]
Length = 427
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/342 (66%), Positives = 290/342 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G +EVL DGFGFLRS SNY+ DDIY+SP QIRR L TGD VEGEIR P+N E
Sbjct: 58 IVGGGVVEVLSDGFGFLRSPQSNYLPGPDDIYVSPQQIRRMGLRTGDTVEGEIRGPRNDE 117
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFAL+K++ +N E P+ K++ FDNLTPL+P++ +E ++++ +GR+ID++API
Sbjct: 118 RYFALVKVESINFEAPDQVKHKVHFDNLTPLYPEERFNIEIPDPTRKDKSGRVIDIVAPI 177
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK+++LQ+IA +I NH E ++V+LIDERPEEVT+MQRSV+GEVI
Sbjct: 178 GKGQRALIVAPPRTGKTVLLQNIAQSIAENHPECYLLVLLIDERPEEVTDMQRSVKGEVI 237
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRL E +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 238 SSTFDEPATRHVQVAEMVIEKAKRLAEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 297
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ LER+
Sbjct: 298 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLERK 357
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+A+KRV+PAI++ KSGTR+EELL+Q LQK+++LR++L +
Sbjct: 358 IADKRVFPAIDILKSGTRKEELLMQQKDLQKVYILRRILNPM 399
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 153/302 (50%), Gaps = 87/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPD--G 429
LK L AE +LEV + LR QEL+FAI K+ ++ I G G +EVL D G
Sbjct: 17 LKSPTDLLAFAE----NLEVENASSLRTQELLFAILKELSERDVEIVGGGVVEVLSDGFG 72
Query: 430 F------GFLRSQGSNYMAS----------------------SDDIYLS----------- 450
F +L Y++ +D+ Y +
Sbjct: 73 FLRSPQSNYLPGPDDIYVSPQQIRRMGLRTGDTVEGEIRGPRNDERYFALVKVESINFEA 132
Query: 451 PSQIRR---FNLHTGIL----WKGEIRVPKNGERYFALLKI--------KKVNVASPKSG 495
P Q++ F+ T + + EI P ++ ++ I + + VA P++G
Sbjct: 133 PDQVKHKVHFDNLTPLYPEERFNIEIPDPTRKDKSGRVIDIVAPIGKGQRALIVAPPRTG 192
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH E ++V+LIDERPEEVT+MQRSV+GEVI+STFDEPA
Sbjct: 193 KTVLLQNIAQSIAENHPECYLLVLLIDERPEEVTDMQRSVKGEVISSTFDEPATRHVQVA 252
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 253 EMVIEKAKRLAEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 312
Query: 589 AR 590
AR
Sbjct: 313 AR 314
>gi|449107361|ref|ZP_21744017.1| transcription termination factor Rho [Treponema denticola ASLM]
gi|451969056|ref|ZP_21922285.1| transcription termination factor Rho [Treponema denticola US-Trep]
gi|448962606|gb|EMB43294.1| transcription termination factor Rho [Treponema denticola ASLM]
gi|451702228|gb|EMD56657.1| transcription termination factor Rho [Treponema denticola US-Trep]
Length = 548
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/348 (66%), Positives = 292/348 (83%), Gaps = 3/348 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR FNL TGD V G+IR
Sbjct: 170 TNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRLFNLKTGDTVYGQIR 229
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALL+++ VN ++P S+ R FDNLTPL+P++ L LE + + I+ RI+
Sbjct: 230 SPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPREKLNLET---TTQEISTRIM 286
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L PIGKGQRGL+VA P++GK+I+LQ IA+AIT NH E +IV+LIDERPEEVT+M+R+
Sbjct: 287 NLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDERPEEVTDMERT 346
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V EVI+STFDE A RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYN +P SG
Sbjct: 347 VNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNQTMPTSG 406
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVDSN+L +PKRFFGAARNIEEGGSLTIIATALIETGS+MD+VI+EEFKGTGNME
Sbjct: 407 KVLSGGVDSNSLHKPKRFFGAARNIEEGGSLTIIATALIETGSKMDEVIFEEFKGTGNME 466
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
V+L+R+L+++R++PAIN+ +SGTR+EELL+ + ++Q +W+LRK + S+
Sbjct: 467 VNLDRKLSDRRLFPAINIKRSGTRKEELLLTEAEMQLMWILRKFISSM 514
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 154/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++KQ++++ I K T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR
Sbjct: 156 MKKQDVIYHILKNHTNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRL 215
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GERYFALL+++ VN
Sbjct: 216 FNLKTGDTVYGQIRSPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPREKLNLE 275
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I+LQ IA+AIT NH E +IV+LIDE
Sbjct: 276 TTTQEISTRIMNLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDE 335
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V EVI+STFDE A L + +LA
Sbjct: 336 RPEEVTDMERTVNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLA 395
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGKVL+GGVDSN+L +PKRFFGAAR
Sbjct: 396 RAYNQTMPTSGKVLSGGVDSNSLHKPKRFFGAAR 429
>gi|449102643|ref|ZP_21739391.1| transcription termination factor Rho [Treponema denticola AL-2]
gi|449109424|ref|ZP_21746058.1| transcription termination factor Rho [Treponema denticola ATCC
33520]
gi|448958667|gb|EMB39395.1| transcription termination factor Rho [Treponema denticola ATCC
33520]
gi|448966232|gb|EMB46890.1| transcription termination factor Rho [Treponema denticola AL-2]
Length = 548
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/348 (66%), Positives = 292/348 (83%), Gaps = 3/348 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR FNL TGD V G+IR
Sbjct: 170 TNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRLFNLKTGDTVYGQIR 229
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALL+++ VN ++P S+ R FDNLTPL+P++ L LE + + I+ RI+
Sbjct: 230 SPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPREKLNLET---TTQEISTRIM 286
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L PIGKGQRGL+VA P++GK+I+LQ IA+AIT NH E +IV+LIDERPEEVT+M+R+
Sbjct: 287 NLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDERPEEVTDMERT 346
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V EVI+STFDE A RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYN +P SG
Sbjct: 347 VNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNQTMPTSG 406
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVDSN+L +PKRFFGAARNIEEGGSLTIIATALIETGS+MD+VI+EEFKGTGNME
Sbjct: 407 KVLSGGVDSNSLHKPKRFFGAARNIEEGGSLTIIATALIETGSKMDEVIFEEFKGTGNME 466
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
V+L+R+L+++R++PAIN+ +SGTR+EELL+ + ++Q +W+LRK + S+
Sbjct: 467 VNLDRKLSDRRLFPAINIKRSGTRKEELLLTEAEMQLMWILRKFISSM 514
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 154/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++KQ++++ I K T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR
Sbjct: 156 MKKQDVIYHILKNHTNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRL 215
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GERYFALL+++ VN
Sbjct: 216 FNLKTGDTVYGQIRSPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPREKLNLE 275
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I+LQ IA+AIT NH E +IV+LIDE
Sbjct: 276 TTTQEISTRIMNLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDE 335
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V EVI+STFDE A L + +LA
Sbjct: 336 RPEEVTDMERTVNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLA 395
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGKVL+GGVDSN+L +PKRFFGAAR
Sbjct: 396 RAYNQTMPTSGKVLSGGVDSNSLHKPKRFFGAAR 429
>gi|398341441|ref|ZP_10526144.1| transcription termination factor Rho [Leptospira kirschneri serovar
Bim str. 1051]
gi|418679440|ref|ZP_13240702.1| transcription termination factor Rho [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418686543|ref|ZP_13247709.1| transcription termination factor Rho [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418740896|ref|ZP_13297272.1| transcription termination factor Rho [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421088996|ref|ZP_15549813.1| transcription termination factor Rho [Leptospira kirschneri str.
200802841]
gi|421131048|ref|ZP_15591236.1| transcription termination factor Rho [Leptospira kirschneri str.
2008720114]
gi|400320170|gb|EJO68042.1| transcription termination factor Rho [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410002394|gb|EKO52914.1| transcription termination factor Rho [Leptospira kirschneri str.
200802841]
gi|410357578|gb|EKP04815.1| transcription termination factor Rho [Leptospira kirschneri str.
2008720114]
gi|410738976|gb|EKQ83708.1| transcription termination factor Rho [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410751491|gb|EKR08468.1| transcription termination factor Rho [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 482
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/346 (66%), Positives = 291/346 (84%), Gaps = 3/346 (0%)
Query: 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
++ G +E LPDG+GFLRS NY+ DDIY+SPSQI+ F L TGD VEG+IR PK
Sbjct: 114 QVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKES 173
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAP 126
ER+FA+L+++ VNG P+++ R LFDNLTPL+P + L +E + + RI+DL+ P
Sbjct: 174 ERFFAMLRVETVNGYTPDVAGKRALFDNLTPLYPNERLKMEYD---PSMLDTRILDLMCP 230
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQR L+VA P++GK+I++Q+IA+AIT+NH E +IV+LIDERPEEVT+M R VRGEV
Sbjct: 231 IGKGQRALIVAPPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEV 290
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN VIP SGK+L+G
Sbjct: 291 VSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSG 350
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNAL +PKRFFGAARNIEEGGSLTIIATALI+TGS+MD+VI+EEFKGTGNME+HL+R
Sbjct: 351 GVDSNALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDR 410
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
+L++KR++PAI++NKSGTR+EELLI D LQK++VLRK+L +++T
Sbjct: 411 KLSDKRIFPAIDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSIT 456
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 157/282 (55%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V + L+KQ L+FAI + + + ++ G +E LPDG+GFLRS NY+ DDIY
Sbjct: 87 LGVENTGGLKKQNLIFAILQAQAERDGQVHAAGVMEKLPDGYGFLRSPDYNYVPGPDDIY 146
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQI+ F L TG +G+IR PK ER+FA+L+++ VN
Sbjct: 147 VSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDVAGKRALFDNLTPLY 206
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I++Q+IA+AIT+NH E
Sbjct: 207 PNERLKMEYDPSMLDTRILDLMCPIGKGQRALIVAPPRTGKTILMQNIANAITSNHPECS 266
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+M R VRGEV++STFDEPA
Sbjct: 267 LIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAKRLVEHGKDVVIL 326
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN VIP SGK+L+GGVDSNAL +PKRFFGAAR
Sbjct: 327 LDSITRLARAYNQVIPTSGKILSGGVDSNALHKPKRFFGAAR 368
>gi|383768477|ref|YP_005447540.1| transcription termination factor Rho [Bradyrhizobium sp. S23321]
gi|381356598|dbj|BAL73428.1| transcription termination factor Rho [Bradyrhizobium sp. S23321]
Length = 421
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/339 (66%), Positives = 291/339 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G+G +EVL DGFGFLRS +NY+ DDIY+SPSQIRRF L TGD +EG IR PK GE
Sbjct: 52 IVGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGE 111
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE ++++ FDNLTPL P + +E + ++++++ R+ID++API
Sbjct: 112 RYFALLKVNTLNFEDPEKARHKVNFDNLTPLFPNQRFRMEIDDPTRKDLSARVIDIVAPI 171
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P++GK++++Q+IAH+IT NH E +IV+LIDERPEEVT+MQRSV+GEV+
Sbjct: 172 GKGQRALIVAPPRTGKTVLMQNIAHSITHNHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE +DV+ILLDSITRL RAYNTV+P+SGKVLTGG
Sbjct: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARNIEEGGSLTIIATAL++TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRK 351
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+++KR +PAI++++SGTR+EEL+ L+K++VLR++L
Sbjct: 352 VSDKRTFPAIDISRSGTRKEELITDPQVLKKMYVLRRIL 390
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 162/283 (57%), Gaps = 83/283 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + +RKQEL+FAI K+ I G+G +EVL DGFGFLRS +NY+ DDIY+S
Sbjct: 26 VENASTMRKQELLFAILKQLALAETDIVGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIK------------KVN---------- 488
PSQIRRF L TG +G IR PK GERYFALLK+ KVN
Sbjct: 86 PSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKARHKVNFDNLTPLFPN 145
Query: 489 ----------------------------------VASPKSGKSIILQHIAHAITTNHSEA 514
VA P++GK++++Q+IAH+IT NH E
Sbjct: 146 QRFRMEIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITHNHPEC 205
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 206 YLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVI 265
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 266 LLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 308
>gi|392375297|ref|YP_003207130.1| transcription termination factor Rho [Candidatus Methylomirabilis
oxyfera]
gi|258592990|emb|CBE69301.1| Transcription termination factor Rho [Candidatus Methylomirabilis
oxyfera]
Length = 444
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/342 (68%), Positives = 293/342 (85%), Gaps = 3/342 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IF +G LEVLPDGFGFLR+ NY+ DDIY+SPSQIRRF+L TGD V G++R PK GE
Sbjct: 78 IFAEGVLEVLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFDLRTGDTVSGQVRPPKEGE 137
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ VN E PEL K++ LFDNLTPL P + + LE +++ + R++DL+ PI
Sbjct: 138 RYFALLKVEAVNFENPELIKDKILFDNLTPLFPNQRIRLE---TAQDELNMRVMDLLTPI 194
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+I+LQ IA++IT NH E I+IV+LIDERPEEVT+ QRSV+ EV+
Sbjct: 195 GKGQRGLIVAPPRTGKTILLQKIANSITKNHPEVILIVLLIDERPEEVTDFQRSVKAEVV 254
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRL RAYNT++P SGKVL+GG
Sbjct: 255 SSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTIVPPSGKVLSGG 314
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARNIEEGGSLTI+ATALI+TGSRMDDVI+EEFKGTGN E+ L+RR
Sbjct: 315 VDSNALQRPKRFFGAARNIEEGGSLTIMATALIDTGSRMDDVIFEEFKGTGNCELVLDRR 374
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L +KRV+PAI++ +SGTR+EELL+ ++L ++W+LRK+L ++
Sbjct: 375 LVDKRVFPAIDIFRSGTRKEELLLTQEELNRMWILRKVLQTM 416
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 161/282 (57%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L V LRKQEL+F I + +T+ IF +G LEVLPDGFGFLR+ NY+ DDIY
Sbjct: 50 LNVVGASGLRKQELIFKILEAQTEKSGLIFAEGVLEVLPDGFGFLRAPDYNYLPGPDDIY 109
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRF+L TG G++R PK GERYFALLK++ VN
Sbjct: 110 VSPSQIRRFDLRTGDTVSGQVRPPKEGERYFALLKVEAVNFENPELIKDKILFDNLTPLF 169
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+I+LQ IA++IT NH E I
Sbjct: 170 PNQRIRLETAQDELNMRVMDLLTPIGKGQRGLIVAPPRTGKTILLQKIANSITKNHPEVI 229
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+ QRSV+ EV++STFDEPA
Sbjct: 230 LIVLLIDERPEEVTDFQRSVKAEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVIL 289
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYNT++P SGKVL+GGVDSNALQRPKRFFGAAR
Sbjct: 290 LDSITRLGRAYNTIVPPSGKVLSGGVDSNALQRPKRFFGAAR 331
>gi|451980714|ref|ZP_21929100.1| Transcription termination factor Rho [Nitrospina gracilis 3/211]
gi|451762050|emb|CCQ90339.1| Transcription termination factor Rho [Nitrospina gracilis 3/211]
Length = 416
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/342 (67%), Positives = 298/342 (87%), Gaps = 2/342 (0%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
+FG G LE+LPDGFGFLR+ NY+ DDIY+SPSQIR+F++HTGD + G+IR PK E
Sbjct: 49 MFGQGVLEILPDGFGFLRAPTYNYLPGPDDIYVSPSQIRKFDMHTGDTISGQIRPPKENE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK++ +N E P+ +K++ LFDNLTPL+P + + LE + + + RI+DL+ PI
Sbjct: 109 RYFALLKVEAINFENPDKTKDKILFDNLTPLYPMERIRLE--TPNCTDYSARIMDLMTPI 166
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA P++GK+++LQ IA++I TNH E ++IV+LIDERPEEVT+M+RSVRGEVI
Sbjct: 167 GKGQRGLIVAPPRTGKTMLLQSIANSIATNHPEMVLIVLLIDERPEEVTDMERSVRGEVI 226
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDEPA RHVQVAEMV+EKAKRLVE KDV+ILLDSITRLARAYN ++P SGKVL+GG
Sbjct: 227 SSTFDEPAQRHVQVAEMVIEKAKRLVEHNKDVVILLDSITRLARAYNAIVPPSGKVLSGG 286
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VDSNALQRPKRFFGAARN+EEGGSLTIIAT+L++TGSRMDDVI+EEFKGTGN+E+ L+R+
Sbjct: 287 VDSNALQRPKRFFGAARNLEEGGSLTIIATSLVDTGSRMDDVIFEEFKGTGNLEIVLDRK 346
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LAEKR++P+I++N+SGTR+EELLI++ +LQKIW+LRK+L +
Sbjct: 347 LAEKRIFPSIDINRSGTRKEELLIEEQELQKIWLLRKVLLPM 388
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/275 (43%), Positives = 149/275 (54%), Gaps = 81/275 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
LRKQ+L+F I + + + +FG G LE+LPDGFGFLR+ NY+ DDIY+SPSQIR+
Sbjct: 29 LRKQDLIFKILQAQIEKDGLMFGQGVLEILPDGFGFLRAPTYNYLPGPDDIYVSPSQIRK 88
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL------------QHIA 504
F++HTG G+IR PK ERYFALLK++ +N +P K IL +
Sbjct: 89 FDMHTGDTISGQIRPPKENERYFALLKVEAINFENPDKTKDKILFDNLTPLYPMERIRLE 148
Query: 505 HAITTNHSEAIM------------------------------------------IVMLID 522
T++S IM IV+LID
Sbjct: 149 TPNCTDYSARIMDLMTPIGKGQRGLIVAPPRTGKTMLLQSIANSIATNHPEMVLIVLLID 208
Query: 523 ERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKL 555
ERPEEVT+M+RSVRGEVI+STFDEPA L + +L
Sbjct: 209 ERPEEVTDMERSVRGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHNKDVVILLDSITRL 268
Query: 556 ARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
ARAYN ++P SGKVL+GGVDSNALQRPKRFFGAAR
Sbjct: 269 ARAYNAIVPPSGKVLSGGVDSNALQRPKRFFGAAR 303
>gi|449131266|ref|ZP_21767482.1| transcription termination factor Rho [Treponema denticola SP37]
gi|448940099|gb|EMB21010.1| transcription termination factor Rho [Treponema denticola SP37]
Length = 548
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/348 (66%), Positives = 292/348 (83%), Gaps = 3/348 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR FNL TGD V G+IR
Sbjct: 170 TNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRLFNLKTGDTVYGQIR 229
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALL+++ VN ++P S+ R FDNLTPL+P++ L LE + + I+ RI+
Sbjct: 230 SPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPREKLNLET---TTQEISTRIM 286
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
+L PIGKGQRGL+VA P++GK+I+LQ IA+AIT NH E +IV+LIDERPEEVT+M+R+
Sbjct: 287 NLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDERPEEVTDMERT 346
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V EVI+STFDE A RHVQVAEMVLEKAKRLVE K+DV+ILLDSITRLARAYN +P SG
Sbjct: 347 VNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNQTMPTSG 406
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVL+GGVDSN+L +PKRFFGAARNIEEGGSLTIIATALIETGS+MD+VI+EEFKGTGNME
Sbjct: 407 KVLSGGVDSNSLHKPKRFFGAARNIEEGGSLTIIATALIETGSKMDEVIFEEFKGTGNME 466
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
V+L+R+L+++R++PAIN+ +SGTR+EELL+ + ++Q +W+LRK + S+
Sbjct: 467 VNLDRKLSDRRLFPAINIKRSGTRKEELLLTEAEMQLMWILRKFISSM 514
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 154/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++KQ++++ I K T G IF GSLE LPDG+GFLRS ++Y+ +DD+Y+SPSQIR
Sbjct: 156 MKKQDVIYHILKNHTNQGGTIFASGSLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRL 215
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GERYFALL+++ VN
Sbjct: 216 FNLKTGDTVYGQIRSPKEGERYFALLRVETVNFDEPAKSQRRIPFDNLTPLYPREKLNLE 275
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I+LQ IA+AIT NH E +IV+LIDE
Sbjct: 276 TTTQEISTRIMNLFCPIGKGQRGLIVAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDE 335
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V EVI+STFDE A L + +LA
Sbjct: 336 RPEEVTDMERTVNAEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLA 395
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGKVL+GGVDSN+L +PKRFFGAAR
Sbjct: 396 RAYNQTMPTSGKVLSGGVDSNSLHKPKRFFGAAR 429
>gi|297180545|gb|ADI16757.1| transcription termination factor [uncultured gamma proteobacterium
HF0010_11B23]
Length = 422
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/359 (64%), Positives = 294/359 (81%), Gaps = 3/359 (0%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
+K G+ + G G LE LPDGFGFLRS +Y+A DD+Y+SPSQIR+FNL TGDFV G IR
Sbjct: 43 SKDGKELLGGGILETLPDGFGFLRSPWGSYLAGPDDVYVSPSQIRKFNLRTGDFVIGNIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
P+ ERYFAL++++ +N +P ++ + F+NLTPL P LE S E+I+ RII
Sbjct: 103 PPREQERYFALVQVESINDNEPSKTQEKIAFENLTPLFPDNRFRLETGSGSSEDISPRII 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGL+V+ PK+GK+++LQ++A +IT N+ E +IV+LIDERPEEVT+MQR+
Sbjct: 163 DLVAPIGKGQRGLIVSPPKAGKTLLLQNLAQSITKNNPETHVIVLLIDERPEEVTDMQRT 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V EV+ASTFDE RHVQVA++V+EKAKRLVE KKDV+ILLDSITRL RAYNTV PASG
Sbjct: 223 VDAEVVASTFDESPQRHVQVADLVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVQPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVDSNAL+RPKRF+GAARNIEEGGSLTIIATAL+ETGS+MDDVIYEEFKGTGNME
Sbjct: 283 KILSGGVDSNALERPKRFYGAARNIEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY---SLTMTSFTVS 357
VHLER++AE+RV+PAIN+ +SGTRRE+LL+ D+L ++ +LRK+L + T F +S
Sbjct: 343 VHLERKIAERRVFPAINILRSGTRREDLLVDKDELNRVHMLRKVLSEQEEVAATEFLIS 401
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 150/280 (53%), Gaps = 83/280 (29%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R +K +++F I K +K G+ + G G LE LPDGFGFLRS +Y+A DD+Y+SPSQ
Sbjct: 26 VSRQKKADIIFNILKTISKDGKELLGGGILETLPDGFGFLRSPWGSYLAGPDDVYVSPSQ 85
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK-------------------- 493
IR+FNL TG G IR P+ ERYFAL++++ +N P
Sbjct: 86 IRKFNLRTGDFVIGNIRPPREQERYFALVQVESINDNEPSKTQEKIAFENLTPLFPDNRF 145
Query: 494 -----SGKS-------------------------------IILQHIAHAITTNHSEAIMI 517
SG S ++LQ++A +IT N+ E +I
Sbjct: 146 RLETGSGSSEDISPRIIDLVAPIGKGQRGLIVSPPKAGKTLLLQNLAQSITKNNPETHVI 205
Query: 518 VMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------------------------LS 550
V+LIDERPEEVT+MQR+V EV+ASTFDE L
Sbjct: 206 VLLIDERPEEVTDMQRTVDAEVVASTFDESPQRHVQVADLVIEKAKRLVEHKKDVVILLD 265
Query: 551 VMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +L RAYNTV PASGK+L+GGVDSNAL+RPKRF+GAAR
Sbjct: 266 SITRLGRAYNTVQPASGKILSGGVDSNALERPKRFYGAAR 305
>gi|254420593|ref|ZP_05034317.1| transcription termination factor Rho [Brevundimonas sp. BAL3]
gi|196186770|gb|EDX81746.1| transcription termination factor Rho [Brevundimonas sp. BAL3]
Length = 477
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/342 (65%), Positives = 288/342 (84%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I DG LE+LPDGFGFLRS +NY+ DD+Y+SPSQIRRF L +GD V G +R P+ GE
Sbjct: 108 IIADGVLEILPDGFGFLRSSDANYLPGPDDVYVSPSQIRRFGLRSGDTVHGAVRAPREGE 167
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALLK+ +N E PE+ K + LFDNLTPL+P++ L +E + ++ +GR+ID++AP+
Sbjct: 168 RYFALLKVDTINLEDPEMVKTKVLFDNLTPLYPEERLHMEIQDPTLKDRSGRVIDIVAPL 227
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQR L+VA P+ GK+++LQ+IA +I NH E I+IV+LIDERPEEVT+MQR+V+GEV+
Sbjct: 228 GKGQRCLIVAPPRVGKTVMLQNIAKSIEKNHPEVILIVLLIDERPEEVTDMQRTVKGEVV 287
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHV VAEMV+EKAKRLVE KKDV+ILLDSITRL RAYN +P+SGKVLTGG
Sbjct: 288 ASTFDEPATRHVAVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNATVPSSGKVLTGG 347
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NALQRPKRFFGAARN+E+GGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L+R+
Sbjct: 348 VDANALQRPKRFFGAARNVEQGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 407
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+A+KR++PAI++ KSGTR+E+L+ D+L K +VLR++L +
Sbjct: 408 VADKRIFPAIDVLKSGTRKEDLITPKDQLAKTYVLRRILNPM 449
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 153/285 (53%), Gaps = 83/285 (29%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
LEV + LRKQ+L+FAI K I DG LE+LPDGFGFLRS +NY+ DD+Y
Sbjct: 80 LEVENASNLRKQDLLFAILKALADEEVEIIADGVLEILPDGFGFLRSSDANYLPGPDDVY 139
Query: 449 LSPSQIRRFNLH------------------------------------TGILWKG----- 467
+SPSQIRRF L T +L+
Sbjct: 140 VSPSQIRRFGLRSGDTVHGAVRAPREGERYFALLKVDTINLEDPEMVKTKVLFDNLTPLY 199
Query: 468 -------EIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQHIAHAITTNHS 512
EI+ P +R ++ I + + VA P+ GK+++LQ+IA +I NH
Sbjct: 200 PEERLHMEIQDPTLKDRSGRVIDIVAPLGKGQRCLIVAPPRVGKTVMLQNIAKSIEKNHP 259
Query: 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------ 548
E I+IV+LIDERPEEVT+MQR+V+GEV+ASTFDEPA
Sbjct: 260 EVILIVLLIDERPEEVTDMQRTVKGEVVASTFDEPATRHVAVAEMVIEKAKRLVEHKKDV 319
Query: 549 ---LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYN +P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 320 VILLDSITRLGRAYNATVPSSGKVLTGGVDANALQRPKRFFGAAR 364
>gi|304320454|ref|YP_003854097.1| transcription termination factor Rho [Parvularcula bermudensis
HTCC2503]
gi|303299356|gb|ADM08955.1| transcription termination factor Rho [Parvularcula bermudensis
HTCC2503]
Length = 439
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/358 (64%), Positives = 294/358 (82%), Gaps = 16/358 (4%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G G LE+L DGFGFLRS +NY+A DDIY SP QIR+F L TGD V GEIR PK+GE
Sbjct: 54 IIGSGVLEILADGFGFLRSADANYLAGPDDIYCSPQQIRKFTLKTGDTVTGEIRSPKDGE 113
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLE----------------RNIE 111
RYFAL K+ VN E PE ++++ FDNLTPL+P++ L +E + E
Sbjct: 114 RYFALTKVNTVNFETPEKARHKVHFDNLTPLYPEERLKMEVVTDEEPGSRGPNGRLKKGE 173
Query: 112 SKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDER 171
S +++ R+ID++AP+GKGQR L+VA P++GK+++LQ+IAHAIT+NH E +IV+LIDER
Sbjct: 174 SGRDLSTRVIDIVAPLGKGQRALIVAPPRTGKTVLLQNIAHAITSNHPECYLIVLLIDER 233
Query: 172 PEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231
PEEVT+MQRSV+GEV++STFDEPA RHV V+EMV+EKAKRLVE +DV+ILLDSITRL R
Sbjct: 234 PEEVTDMQRSVKGEVVSSTFDEPASRHVAVSEMVIEKAKRLVEHGRDVVILLDSITRLGR 293
Query: 232 AYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIY 291
AYNTV+P+SGKVLTGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+V++
Sbjct: 294 AYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVVF 353
Query: 292 EEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
EEFKGTGN E+ L+R++A+KRV+PAI++ KSGTR+E+LLI+ +L KI+VLR++L +
Sbjct: 354 EEFKGTGNSEIVLDRKVADKRVFPAIDVAKSGTRKEDLLIEKGELAKIFVLRRILSPM 411
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 94/129 (72%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAIT+NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 198 VAPPRTGKTVLLQNIAHAITSNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPA 257
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +L RAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 258 SRHVAVSEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR 317
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 318 PKRFFGAAR 326
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
V + LRKQ+L+FAI K+ I G G LE+L DGFGFLRS +NY+A DDIY S
Sbjct: 28 VENASALRKQDLLFAILKELADEDVEIIGSGVLEILADGFGFLRSADANYLAGPDDIYCS 87
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAITTN 510
P QIR+F L TG GEIR PK+GERYFAL K+ VN +P+ + + H +
Sbjct: 88 PQQIRKFTLKTGDTVTGEIRSPKDGERYFALTKVNTVNFETPEKARHKV--HFDNLTPLY 145
Query: 511 HSEAIMIVMLIDERP 525
E + + ++ DE P
Sbjct: 146 PEERLKMEVVTDEEP 160
>gi|407894298|ref|ZP_11153328.1| transcription termination factor Rho [Diplorickettsia massiliensis
20B]
Length = 396
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/362 (65%), Positives = 287/362 (79%), Gaps = 24/362 (6%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE I+GDG LE+LPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD V G+IR
Sbjct: 43 AKRGEDIYGDGVLEILPDGFGFLRSAEASYLAGPDDIYVSPSQIRRFNLHTGDTVSGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK ERYFALLK+ +N + PE +KNR LF+NLTPL P + + LER S E+IT R+I
Sbjct: 103 PPKESERYFALLKVNDINFDTPENAKNRVLFENLTPLFPDERISLERGNGSTEDITARVI 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+APIGKGQRGL+V+ PK+GK++++Q+IA +I N + +IV+LIDERPEEVT+M+RS
Sbjct: 163 DLVAPIGKGQRGLIVSPPKAGKTMMMQNIAQSIAHNCPDCYLIVLLIDERPEEVTDMRRS 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVIASTFDEPA RHVQVAE+V+EKAKRLVE KKDV+ILLDS+TRLARAYNTVIP+SG
Sbjct: 223 VRGEVIASTFDEPATRHVQVAEIVIEKAKRLVEHKKDVVILLDSMTRLARAYNTVIPSSG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NALQRPKRFF GS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALQRPKRFF----------------------GSKMDEVIYEEFKGTGNME 320
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFI 361
+HL+RR+AEKR+YPAI+LN+SGTRREELL + D LQK+W+LRK+L S M F I
Sbjct: 321 IHLDRRIAEKRIYPAIHLNRSGTRREELLAKPDTLQKMWILRKILQS--MDEVAAMEFLI 378
Query: 362 KR 363
R
Sbjct: 379 DR 380
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 89/127 (70%), Gaps = 27/127 (21%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q+IA +I N + +IV+LIDERPEEVT+M+RSVRGEVIASTFDEPA
Sbjct: 177 VSPPKAGKTMMMQNIAQSIAHNCPDCYLIVLLIDERPEEVTDMRRSVRGEVIASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L M +LARAYNTVIP+SGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEIVIEKAKRLVEHKKDVVILLDSMTRLARAYNTVIPSSGKVLTGGVDANALQR 296
Query: 582 PKRFFGA 588
PKRFFG+
Sbjct: 297 PKRFFGS 303
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L++ + RL K++++F+I K K GE I+GDG LE+LPDGFGFLRS ++Y+A DDI
Sbjct: 20 ELKIEGLGRLHKKDMIFSILKANAKRGEDIYGDGVLEILPDGFGFLRSAEASYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNLHTG G+IR PK ERYFALLK+ +N +P++ K+ +L
Sbjct: 80 YVSPSQIRRFNLHTGDTVSGKIRPPKESERYFALLKVNDINFDTPENAKNRVL 132
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,864,847,297
Number of Sequences: 23463169
Number of extensions: 369585446
Number of successful extensions: 1006900
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3088
Number of HSP's successfully gapped in prelim test: 15732
Number of HSP's that attempted gapping in prelim test: 975263
Number of HSP's gapped (non-prelim): 26974
length of query: 592
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 444
effective length of database: 8,886,646,355
effective search space: 3945670981620
effective search space used: 3945670981620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)