BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3765
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 241/347 (69%), Positives = 296/347 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+N ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 511 bits (1315), Expect = e-145, Method: Compositional matrix adjust.
Identities = 241/347 (69%), Positives = 296/347 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 66 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 125
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+N ER S E++T R++D
Sbjct: 126 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 185
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 186 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 245
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 246 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 305
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 306 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 365
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 366 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 412
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 199 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 258
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 259 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 318
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 319 PKRFFGAAR 327
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 42 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 101
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 102 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 154
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 497 bits (1279), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/345 (68%), Positives = 289/345 (83%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+N ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRXERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+ +LQ+IA +I NH + ++ V+LIDERPEEVTE QR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAE V+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+ D+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY 347
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK W+LRK+++
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKXWILRKIIH 388
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 88/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+ +LQ+IA +I NH + ++ V+LIDERPEEVTE QR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 83/110 (75%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENLARXRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/345 (68%), Positives = 289/345 (83%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 47 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 106
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+N ER S E++T R++D
Sbjct: 107 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRXERGNGSTEDLTARVLD 166
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+ +LQ+IA +I NH + ++ V+LIDERPEEVTE QR V
Sbjct: 167 LASPIGRGQRGLIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLV 226
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAE V+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 227 KGEVVASTFDEPASRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 286
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+ D+VIYEEFKGTGN E+
Sbjct: 287 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXEL 346
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLY 347
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK W+LRK+++
Sbjct: 347 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKXWILRKIIH 391
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 88/129 (68%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+ +LQ+IA +I NH + ++ V+LIDERPEEVTE QR V+GEV+ASTFDEPA
Sbjct: 180 VAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLVKGEVVASTFDEPA 239
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 240 SRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 299
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 300 PKRFFGAAR 308
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 83/110 (75%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 26 LENLARXRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 85
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 86 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 135
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/344 (59%), Positives = 261/344 (75%), Gaps = 7/344 (2%)
Query: 9 FGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGER 68
FG+G LE+ P+GFGFLR N + S+DDIY+SPSQIR+FNL+TGD + G IR PK GE+
Sbjct: 57 FGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEK 116
Query: 69 YFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNI-ESKENI-TGRIIDLIAP 126
YFA++KI+ +N E +R FDN ER I E+ I + R+IDL AP
Sbjct: 117 YFAMIKIEAINYRPVEAVNDRVNFDNLTPDYPR-----ERFILETDPKIYSTRLIDLFAP 171
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
IGKGQRG++VA PK+GK+ IL+ IA+ I NH + I I++LIDERPEEVT+++ S V
Sbjct: 172 IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIV 231
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
IA+ FD P + V+VAE+ LE AKRLVE DV+ILLDS+TRLAR YN V+P SGK+LTG
Sbjct: 232 IAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTG 291
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVD AL +PKRFFGAARN EGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNME+ L R
Sbjct: 292 GVDPAALYKPKRFFGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSR 351
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+LA KR++PAINL SGTRREELL+ ++ L+K+W+LR++L ++T
Sbjct: 352 QLANKRIFPAINLLLSGTRREELLLDEETLKKVWLLRRMLSAMT 395
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 146/274 (53%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
+RK++L+FAI K +T+ FG+G LE+ P+GFGFLR N + S+DDIY+SPSQIR+
Sbjct: 36 MRKRDLIFAILKAQTESTGYFFGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRK 95
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL+TG + G IR PK GE+YFA++KI+ +N
Sbjct: 96 FNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDNLTPDYPRERFILE 155
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA PK+GK+ IL+ IA+ I NH + I I++LIDE
Sbjct: 156 TDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+++ S VIA+ FD P L + +LA
Sbjct: 216 RPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLA 275
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
R YN V+P SGK+LTGGVD AL +PKRFFGAAR
Sbjct: 276 RVYNIVVPPSGKLLTGGVDPAALYKPKRFFGAAR 309
>pdb|1A63|A Chain A, The Nmr Structure Of The Rna Binding Domain Of E.Coli Rho
Factor Suggests Possible Rna-Protein Interactions, 10
Structures
Length = 130
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 84/110 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKS 497
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARN 129
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 71/88 (80%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNR 89
PK GERYFALLK+ +VN +KPE ++N+
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARNK 130
>pdb|1A62|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The
Transcriptional Terminator Protein Rho
Length = 130
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 81/107 (75%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENLARXRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKS 497
PSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARN 129
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 71/88 (80%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNR 89
PK GERYFALLK+ +VN +KPE ++N+
Sbjct: 103 PPKEGERYFALLKVNEVNFDKPENARNK 130
>pdb|1A8V|A Chain A, Structure Of The Rna-Binding Domain Of The Rho
Transcription Terminator
pdb|1A8V|B Chain B, Structure Of The Rna-Binding Domain Of The Rho
Transcription Terminator
Length = 121
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 77/99 (77%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 23 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 82
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKK 486
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +
Sbjct: 83 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 121
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 61/76 (80%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 46 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 105
Query: 62 VPKNGERYFALLKIKK 77
PK GERYFALLK+ +
Sbjct: 106 PPKEGERYFALLKVNE 121
>pdb|2A8V|A Chain A, Rho Transcription Termination FactorRNA COMPLEX
pdb|2A8V|B Chain B, Rho Transcription Termination FactorRNA COMPLEX
pdb|2A8V|C Chain C, Rho Transcription Termination FactorRNA COMPLEX
Length = 118
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 77/99 (77%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKK 486
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 61/76 (80%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKK 77
PK GERYFALLK+ +
Sbjct: 103 PPKEGERYFALLKVNE 118
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 13/237 (5%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
R ID + G GQR + A GKS +L I + + + I+++ LI ER EV E
Sbjct: 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD----IIVLALIGERGREVNEF 115
Query: 179 -----QRSV-RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232
Q ++ + ++ +T D PA ++ A A+ + K+V++++DS+TR ARA
Sbjct: 116 LALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARA 175
Query: 233 YNTVIPASGKV-LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIY 291
V ASG+ + GG + + A + GS+T I T L+E+ ++D I
Sbjct: 176 ARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPK-GSITAIYTVLLES-DNVNDPIG 233
Query: 292 EEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348
+E + + + L R LAE+ +PAI++ S +R ++ + L+ +KL+ +
Sbjct: 234 DEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIAT 290
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 14/249 (5%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
R I+ + +G+GQR L A GKS++L +A + +++V LI ER EV +
Sbjct: 146 RAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD----VIVVGLIGERGREVKDF 201
Query: 179 QRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231
++ G VIA+ D +Q A A+ + + V++++DS+TR A
Sbjct: 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAM 261
Query: 232 AYNTVIPASGKV-LTGGVDSNALQR-PKRFFGAARNIEEGGSLTIIATALIETGSRMDDV 289
A + A G+ T G + + P A I GGS+T T L E G D
Sbjct: 262 AQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTE-GDDQQDP 320
Query: 290 IYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
I + + + + L RRLAE YPAI++ S +R LI + ++ + ++LL S
Sbjct: 321 IADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRLFKQLLSSF 380
Query: 350 TMTSFTVSL 358
VS+
Sbjct: 381 QRNRDLVSV 389
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 24/222 (10%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+++DL+AP KG + L GK++++Q + H I H I + + ER E ++
Sbjct: 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDL 198
Query: 179 QRSVRGE-VIAST------FDEPAYRHVQVAEMVLEKAKRL-VEMKKDVIILLDSITRLA 230
++ VI+ T +EP ++VA L A+ E +D ++ +D+I R
Sbjct: 199 YHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFT 258
Query: 231 RAYNTV------IPAS-GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETG 283
+A + V +P++ G T + LQ +R A+ GS+T I +
Sbjct: 259 QAGSEVSALLGRMPSAIGYQPTLATEMGQLQ--ERITSTAK-----GSITSIQAIYVPAD 311
Query: 284 SRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D F + +LER+LAE +YPA++ S +R
Sbjct: 312 DYTDPAPATTFSHL-DATTNLERKLAEMGIYPAVDPLVSTSR 352
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 24/222 (10%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
++IDL+AP KG + L GK++++Q + + + H + + + ER E ++
Sbjct: 133 KVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHG-GLSVFAGVGERTREGNDL 191
Query: 179 QRSVRGE-VIAST------FDEPAYRHVQVAEMVLEKAKRLVEMK-KDVIILLDSITRLA 230
++ VI+ T +EP ++VA L A+ + + +DV++ +D+I R
Sbjct: 192 YHEMKDSGVISKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDREGQDVLLFIDNIFRFT 251
Query: 231 RAYNTV------IP-ASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETG 283
+A + V +P A G T + LQ +R + GS+T I +
Sbjct: 252 QAGSEVSALLGRMPSAVGYQPTLATEMGQLQ--ERITSTKK-----GSITSIQAIYVPAD 304
Query: 284 SRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D F + +LER+LAE +YPA++ S +R
Sbjct: 305 DYTDPAPATTFAHL-DATTNLERKLAEMGIYPAVDPLASTSR 345
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 38/230 (16%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+ ID + PIG+GQR L++ ++GK+ I I I + I I + I ++ V +
Sbjct: 151 KAIDSMIPIGRGQRELIIGDRQTGKTTI--AIDTIINQKGQDVICIYVAIGQKQSTVAGV 208
Query: 179 QRSVRGE-------VIASTFDEPA-------YRHVQVAEMVLEKAKRLVEMKKDVIILLD 224
++R V+ ++ EPA Y + E + K K +++ D
Sbjct: 209 VETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKH-------ALVVYD 261
Query: 225 SITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEEGGSLTIIA 276
+++ A AY + P + G V S L+R AA+ +E G ++ A
Sbjct: 262 DLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER------AAKLSDEKGGGSLTA 315
Query: 277 TALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
IET + I + ++ LE L V PA+N+ S +R
Sbjct: 316 LPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSR 365
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 9/220 (4%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP------ 172
++IDL+ P KG + L GK++ + + I HS + + ER
Sbjct: 131 KVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHS-GYSVFAGVGERTREGNDF 189
Query: 173 -EEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231
E+T+ + ++ +EP ++VA L A++ + +DV++ +D+I R
Sbjct: 190 YHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTL 249
Query: 232 AYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIY 291
A V G++ + L + GS+T + + D
Sbjct: 250 AGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPA 309
Query: 292 EEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLI 331
F + V L R++A +YPA++ S +R+ + L+
Sbjct: 310 TTFAHL-DATVVLSRQIASLGIYPAVDPLDSTSRQLDPLV 348
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 15/220 (6%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+++DL+AP +G + L GK++ +Q + + I H + + ER E ++
Sbjct: 134 KVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG-GFSVFTGVGERTREGNDL 192
Query: 179 QRSVR--------GE----VIASTFDEPAYRHVQVAEMVLEKAKRL-VEMKKDVIILLDS 225
R ++ GE ++ +EP +VA L A+ E +DV++ +D+
Sbjct: 193 YREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 252
Query: 226 ITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSR 285
I R +A + V G++ + L + GS+T + +
Sbjct: 253 IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDL 312
Query: 286 MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D F V L R ++E +YPA++ S +R
Sbjct: 313 TDPAPATTFAHLDATTV-LSRGISELGIYPAVDPLDSKSR 351
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 15/220 (6%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+++DL+AP +G + L GK++ +Q + + I H + + ER E ++
Sbjct: 145 KVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG-GFSVFTGVGERTREGNDL 203
Query: 179 QRSVR--------GE----VIASTFDEPAYRHVQVAEMVLEKAKRL-VEMKKDVIILLDS 225
R ++ GE ++ +EP +VA L A+ E +DV++ +D+
Sbjct: 204 YREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 263
Query: 226 ITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSR 285
I R +A + V G++ + L + GS+T + +
Sbjct: 264 IFRFTQAGSEVSALLGRIPSAFGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDL 323
Query: 286 MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D F V L R ++E +YPA++ S +R
Sbjct: 324 TDPAPATTFAHLDATTV-LSRGISELGIYPAVDPLDSKSR 362
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 15/220 (6%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+++DL+AP +G + L GK++ +Q + + I H + + ER E ++
Sbjct: 172 KVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG-GFSVFTGVGERTREGNDL 230
Query: 179 QRSVR--------GE----VIASTFDEPAYRHVQVAEMVLEKAKRL-VEMKKDVIILLDS 225
R ++ GE ++ +EP +VA L A+ E +DV++ +D+
Sbjct: 231 YREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 290
Query: 226 ITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSR 285
I R +A + V G++ + L + GS+T + +
Sbjct: 291 IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDL 350
Query: 286 MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D F V L R ++E +YPA++ S +R
Sbjct: 351 TDPAPATTFAHLDATTV-LSRGISELGIYPAVDPLDSKSR 389
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 15/220 (6%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+++DL+AP +G + L GK++ +Q + + I H + + ER E ++
Sbjct: 134 KVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG-GFSVFTGVGERTREGNDL 192
Query: 179 QRSVR--------GE----VIASTFDEPAYRHVQVAEMVLEKAKRL-VEMKKDVIILLDS 225
R ++ GE ++ +EP +VA L A+ E +DV++ +D+
Sbjct: 193 YREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 252
Query: 226 ITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSR 285
I R +A + V G++ + L + GS+T + +
Sbjct: 253 IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDL 312
Query: 286 MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D F V L R ++E +YPA++ S +R
Sbjct: 313 TDPAPATTFAHLDATTV-LSRGISELGIYPAVDPLDSKSR 351
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 15/220 (6%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+++DL+AP +G + L GK++ +Q + + I H + + ER E ++
Sbjct: 145 KVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG-GFSVFTGVGERTREGNDL 203
Query: 179 QRSVR--------GE----VIASTFDEPAYRHVQVAEMVLEKAKRL-VEMKKDVIILLDS 225
R ++ GE ++ +EP +VA L A+ E +DV++ +D+
Sbjct: 204 YREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 263
Query: 226 ITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSR 285
I R +A + V G++ + L + GS+T + +
Sbjct: 264 IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDL 323
Query: 286 MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D F V L R ++E +YPA++ S +R
Sbjct: 324 TDPAPATTFAHLDATTV-LSRGISELGIYPAVDPLDSKSR 362
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 15/220 (6%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+++DL+AP +G + L GK++ +Q + + I H + + ER E ++
Sbjct: 139 KVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG-GFSVFTGVGERTREGNDL 197
Query: 179 QRSVR--------GE----VIASTFDEPAYRHVQVAEMVLEKAKRL-VEMKKDVIILLDS 225
R ++ GE ++ +EP +VA L A+ E +DV++ +D+
Sbjct: 198 YREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 257
Query: 226 ITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSR 285
I R +A + V G++ + L + GS+T + +
Sbjct: 258 IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDL 317
Query: 286 MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D F V L R ++E +YPA++ S +R
Sbjct: 318 TDPAPATTFAHLDATTV-LSRGISELGIYPAVDPLDSKSR 356
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 28/229 (12%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKS-----IILQHIAHAITTNHSEAIMIVML-IDERP 172
+ +D + PIG+GQR L++ ++GK+ IL ++ S+ + V + + ++
Sbjct: 128 KAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKR 187
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ +++ ++A+T E A + + K +I+ D
Sbjct: 188 STVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDD 247
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEEGGSLTIIAT 277
+++ A AY + P + G V S L+R AA+ E+ GS ++ A
Sbjct: 248 LSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLER------AAKLSEKEGSGSLTAL 301
Query: 278 ALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+IET G + I + ++ LE L K + PAIN+ S +R
Sbjct: 302 PVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSR 350
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 28/229 (12%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKS-----IILQHIAHAITTNHSEAIMIVML-IDERP 172
+ +D + PIG+GQR L++ ++GK+ IL ++ S+ + V + + ++
Sbjct: 129 KAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKR 188
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ +++ ++A+T E A + + K +I+ D
Sbjct: 189 STVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDD 248
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEEGGSLTIIAT 277
+++ A AY + P + G V S L+R AA+ E+ GS ++ A
Sbjct: 249 LSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLER------AAKLSEKEGSGSLTAL 302
Query: 278 ALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+IET G + I + ++ LE L K + PAIN+ S +R
Sbjct: 303 PVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSR 351
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 28/229 (12%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKS-----IILQHIAHAITTNHSEAIMIVML-IDERP 172
+ +D + PIG+GQR L++ ++GK+ IL ++ S+ + V + + ++
Sbjct: 153 KAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKR 212
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ +++ ++A+T E A + + K +I+ D
Sbjct: 213 STVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDD 272
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEEGGSLTIIAT 277
+++ A AY + P + G V S L+R AA+ E+ GS ++ A
Sbjct: 273 LSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLER------AAKLSEKEGSGSLTAL 326
Query: 278 ALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+IET G + I + ++ LE L K + PAIN+ S +R
Sbjct: 327 PVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSR 375
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 28/229 (12%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKS-----IILQHIAHAITTNHSEAIMIVML-IDERP 172
+ +D + PIG+GQR L++ ++GK+ IL ++ S+ + V + + ++
Sbjct: 153 KAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKR 212
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ +++ ++A+T E A + + K +I+ D
Sbjct: 213 STVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDD 272
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEEGGSLTIIAT 277
+++ A AY + P + G V S L+R AA+ E+ GS ++ A
Sbjct: 273 LSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLER------AAKLSEKEGSGSLTAL 326
Query: 278 ALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+IET G + I + ++ LE L K + PAIN+ S +R
Sbjct: 327 PVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSR 375
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 28/229 (12%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKS-----IILQHIAHAITTNHSEAIMIVML-IDERP 172
+ +D + PIG+GQR L++ ++GK+ IL ++ S+ + V + + ++
Sbjct: 153 KAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKR 212
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ +++ ++A+T E A + + K +I+ D
Sbjct: 213 STVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDD 272
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEEGGSLTIIAT 277
+++ A AY + P + G V S L+R AA+ E+ GS ++ A
Sbjct: 273 LSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLER------AAKLSEKEGSGSLTAL 326
Query: 278 ALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+IET G + I + ++ LE L K + PAIN+ S +R
Sbjct: 327 PVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSR 375
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 28/229 (12%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKS-----IILQHIAHAITTNHSEAIMIVML-IDERP 172
+ +D + PIG+GQR L++ ++GK+ IL ++ S+ + V + + ++
Sbjct: 188 KAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKR 247
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ +++ ++A+T E A + + K +I+ D
Sbjct: 248 STVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDD 307
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEEGGSLTIIAT 277
+++ A AY + P + G V S L+R AA+ E+ GS ++ A
Sbjct: 308 LSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLER------AAKLSEKEGSGSLTAL 361
Query: 278 ALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+IET G + I + ++ LE L K + PAIN+ S +R
Sbjct: 362 PVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSR 410
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+ ID + PIG+GQR L++ ++GK+ + I I I I + I ++ V +
Sbjct: 151 KAIDALVPIGRGQRELIIGDRQTGKTSV--AIDTIINQKDQNMICIYVAIGQKESTVATV 208
Query: 179 QRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231
++ V+ ++ +PA + + + M K V++++D +++ A
Sbjct: 209 VETLAKHGAPDYTIVVTASASQPAPLLFLAPYAGVAMGEYFMIMGKHVLVVIDDLSKQAA 268
Query: 232 AYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEEGGSLTIIATALIET- 282
AY + P + G + S L+R + A + GGSLT A +ET
Sbjct: 269 AYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSDA----KGGGSLT--ALPFVETQ 322
Query: 283 GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+ I + ++ L+ L V PAIN S +R
Sbjct: 323 AGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLSVSR 365
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML-IDERPE 173
ITG R+ID P+ KG + +GK+++ IA S+ ++V + ER
Sbjct: 217 ITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAK-----WSDVDLVVYVGCGERGN 271
Query: 174 EVTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMK 216
E+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 272 EMTDVVNEFPELIDPNTGESLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMG 328
Query: 217 KDVIILLDSITRLARAYNTVIPASGKV-----------LTGGVDSNALQRPKRFFGAARN 265
DV I+ DS +R A A + SG++ G + +R R +
Sbjct: 329 YDVAIMADSTSRWAEALREM---SGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSD 385
Query: 266 IEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
E GS+T I +A+ +G + + + + + L+ LA+KR +P+IN +S
Sbjct: 386 QRE-GSITAI-SAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQS 440
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 107 ERNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIV 165
E ++E + +TG +++DL+AP KG + L GK++++ + + + H +
Sbjct: 125 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVF 183
Query: 166 MLIDERPEEVTEMQRSV-------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212
+ ER E ++ + + ++ +EP +VA L A+
Sbjct: 184 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 243
Query: 213 VEMK-KDVIILLDSITRLARAYNTV------IP-ASGKVLTGGVDSNALQRPKRFFGAAR 264
+ + +DV++ +D+I R +A + V IP A G T D +Q +R +
Sbjct: 244 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQ--ERITTTKK 301
Query: 265 NIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGT 324
GS+T + + D F V L R +AE +YPA++ S +
Sbjct: 302 -----GSITSVQAIYVPADDLTDPAPATTFAHLDATTV-LSRAIAELGIYPAVDPLDSTS 355
Query: 325 R 325
R
Sbjct: 356 R 356
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 117 TGRI-IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175
TG I ID + P+G+GQR L++ ++GK+ + + I + + I ++ V
Sbjct: 149 TGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDT--ILNQQGQNVICVYVAIGQKASSV 206
Query: 176 TEMQRSV--RGE-----VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITR 228
++ + RG V+A T D PA A+ + ++ +I+ D +++
Sbjct: 207 AQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSK 266
Query: 229 LARAY 233
A+AY
Sbjct: 267 QAQAY 271
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 107 ERNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIV 165
E ++E + +TG +++DL+AP KG + L GK++++ + + + H +
Sbjct: 127 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVF 185
Query: 166 MLIDERPEEVTEMQRSV-------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212
+ ER E ++ + + ++ +EP +VA L A+
Sbjct: 186 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 245
Query: 213 VEMK-KDVIILLDSITRLARAYNTV------IP-ASGKVLTGGVDSNALQRPKRFFGAAR 264
+ + +DV++ +D+I R +A + V IP A G T D +Q +R +
Sbjct: 246 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQ--ERITTTKK 303
Query: 265 NIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGT 324
GS+T + + D F V L R +AE +YPA++ S +
Sbjct: 304 -----GSITSVQAIYVPADDLTDPAPATTFAHLDATTV-LSRAIAELGIYPAVDPLDSTS 357
Query: 325 R 325
R
Sbjct: 358 R 358
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 107 ERNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIV 165
E ++E + +TG +++DL+AP KG + L GK++++ + + + H +
Sbjct: 117 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVF 175
Query: 166 MLIDERPEEVTEMQRSV-------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212
+ ER E ++ + + ++ +EP +VA L A+
Sbjct: 176 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 235
Query: 213 VEMK-KDVIILLDSITRLARAYNTV------IP-ASGKVLTGGVDSNALQRPKRFFGAAR 264
+ + +DV++ +D+I R +A + V IP A G T D +Q +R +
Sbjct: 236 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQ--ERITTTKK 293
Query: 265 NIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGT 324
GS+T + + D F V L R +AE +YPA++ S +
Sbjct: 294 -----GSITSVQAIYVPADDLTDPAPATTFAHLDATTV-LSRAIAELGIYPAVDPLDSTS 347
Query: 325 R 325
R
Sbjct: 348 R 348
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 107 ERNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIV 165
E ++E + +TG +++DL+AP KG + L GK++++ + + + H +
Sbjct: 175 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVF 233
Query: 166 MLIDERPEEVTEMQRSV-------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212
+ ER E ++ + + ++ +EP +VA L A+
Sbjct: 234 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 293
Query: 213 VEMK-KDVIILLDSITRLARAYNTV------IP-ASGKVLTGGVDSNALQRPKRFFGAAR 264
+ + +DV++ +D+I R +A + V IP A G T D +Q +R
Sbjct: 294 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQ--ERI----- 346
Query: 265 NIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGT 324
+ GS+T + + D F V L R +AE +YPA++ S +
Sbjct: 347 TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTV-LSRAIAELGIYPAVDPLDSTS 405
Query: 325 R 325
R
Sbjct: 406 R 406
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 107 ERNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIV 165
E ++E + +TG +++DL+AP KG + L GK++++ + + + H +
Sbjct: 129 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVF 187
Query: 166 MLIDERPEEVTEMQRSV-------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212
+ ER E ++ + + ++ +EP +VA L A+
Sbjct: 188 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 247
Query: 213 VEMK-KDVIILLDSITRLARAYNTV------IP-ASGKVLTGGVDSNALQRPKRFFGAAR 264
+ + +DV++ +D+I R +A + V IP A G T D +Q +R +
Sbjct: 248 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQ--ERITTTKK 305
Query: 265 NIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGT 324
GS+T + + D F V L R +AE +YPA++ S +
Sbjct: 306 -----GSITSVQAIYVPADDLTDPAPATTFAHLDATTV-LSRAIAELGIYPAVDPLDSTS 359
Query: 325 R 325
R
Sbjct: 360 R 360
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 107 ERNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIV 165
E ++E + +TG +++DL+AP KG + L GK++++ + + + H +
Sbjct: 129 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVF 187
Query: 166 MLIDERPEEVTEMQRSV-------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212
+ ER E ++ + + ++ +EP +VA L A+
Sbjct: 188 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 247
Query: 213 VEMK-KDVIILLDSITRLARAYNTV------IP-ASGKVLTGGVDSNALQRPKRFFGAAR 264
+ + +DV++ +D+I R +A + V IP A G T D +Q +R +
Sbjct: 248 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQ--ERITTTKK 305
Query: 265 NIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGT 324
GS+T + + D F V L R +AE +YPA++ S +
Sbjct: 306 -----GSITSVQAIYVPADDLTDPAPATTFAHLDATTV-LSRAIAELGIYPAVDPLDSTS 359
Query: 325 R 325
R
Sbjct: 360 R 360
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 107 ERNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIV 165
E ++E + +TG +++DL+AP KG + L GK++++ + + + H +
Sbjct: 129 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVF 187
Query: 166 MLIDERPEEVTEMQRSV-------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212
+ ER E ++ + + ++ +EP +VA L A+
Sbjct: 188 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 247
Query: 213 VEMK-KDVIILLDSITRLARAYNTV------IP-ASGKVLTGGVDSNALQRPKRFFGAAR 264
+ + +DV++ +D+I R +A + V IP A G T D +Q +R +
Sbjct: 248 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQ--ERITTTKK 305
Query: 265 NIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGT 324
GS+T + + D F V L R +AE +YPA++ S +
Sbjct: 306 -----GSITSVQAIXVPADDLTDPAPATTFAHLDATTV-LSRAIAELGIYPAVDPLDSTS 359
Query: 325 R 325
R
Sbjct: 360 R 360
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 39/235 (16%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P KG + A SGK++ H + ++I + ER E
Sbjct: 212 ITGQRVIDTFFPQAKGGTAAIPAPFGSGKTV----TQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 268 MTDVLEEFPKLKDPKTGKPLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 218 DVIILLDSITRLARAYNTVIPASGKV--LTG--GVDSNALQRPKRFFG-AARNIEEG--- 269
DV ++ DS +R A A + SG++ + G G + + F+ A R + G
Sbjct: 325 DVALMADSTSRWAEALREI---SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 381
Query: 270 --GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
GS+++I G + V+ + + L+ LA +R +PAIN S
Sbjct: 382 RVGSVSVIGAVSPPGGDFSEPVVQNTLR-VVKVFWALDADLARRRHFPAINWLTS 435
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 41/235 (17%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
+TG RI+D++ P+ G + SGK++ Q +A + +++ + ER E
Sbjct: 206 LTGMRILDVLFPVAMGGTAAIPGPFGSGKTVTQQSLAKWSNAD----VVVYVGCGERGNE 261
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M R+V +IA+T + P + + A+ +
Sbjct: 262 MTDVLVEFPELTDPKTGGPLMHRTV---LIANTSNMPVAAREASIYVGVTIAEYFRDQGF 318
Query: 218 DVIILLDSITRLARAYNTV------IPASGKVLTGGVDSNALQRPKRFFGAARNI----E 267
V ++ DS +R A A + +PA G R F+ A +
Sbjct: 319 SVALMADSTSRWAEALREISSRLEEMPAE-----EGYPPYLAARLAAFYERAGKVITLGG 373
Query: 268 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
E G++TI+ G + V + G L+ LA +R +PAIN N S
Sbjct: 374 EEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAF-WRLDASLAFRRHFPAINWNGS 427
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGK------SIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ +D + PIG+GQR L++ ++GK +II Q + T + I + I ++
Sbjct: 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 210
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ + + V+++T + A + + K +I+ D
Sbjct: 211 STVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDD 270
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRF---FGAARNIEEGGSLTI 274
+++ A AY + P + G V S L+R + FG GGSLT
Sbjct: 271 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFG-------GGSLT- 322
Query: 275 IATALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
A +IET + I + ++ LE L K + PAIN+ S +R
Sbjct: 323 -ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 373
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGK------SIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ +D + PIG+GQR L++ ++GK +II Q + T + I + I ++
Sbjct: 128 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 187
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ + + V+++T + A + + K +I+ D
Sbjct: 188 STVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDD 247
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRF---FGAARNIEEGGSLTI 274
+++ A AY + P + G V S L+R + FG GGSLT
Sbjct: 248 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG-------GGSLT- 299
Query: 275 IATALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
A +IET + I + ++ LE L K + PAIN+ S +R
Sbjct: 300 -ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 350
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGK------SIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ +D + PIG+GQR L++ ++GK +II Q + T + I + I ++
Sbjct: 133 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 192
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ + + V+++T + A + + K +I+ D
Sbjct: 193 STVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDD 252
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRF---FGAARNIEEGGSLTI 274
+++ A AY + P + G V S L+R + FG GGSLT
Sbjct: 253 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG-------GGSLT- 304
Query: 275 IATALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
A +IET + I + ++ LE L K + PAIN+ S +R
Sbjct: 305 -ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 355
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGK------SIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ +D + PIG+GQR L++ ++GK +II Q + T + I + I ++
Sbjct: 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 210
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ + + V+++T + A + + K +I+ D
Sbjct: 211 STVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDD 270
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRF---FGAARNIEEGGSLTI 274
+++ A AY + P + G V S L+R + FG GGSLT
Sbjct: 271 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFG-------GGSLT- 322
Query: 275 IATALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
A +IET + I + ++ LE L K + PAIN+ S +R
Sbjct: 323 -ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 373
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P KG + SGK++ H + ++I + ER E
Sbjct: 212 ITGQRVIDTFFPQAKGGTAAIPGPAGSGKTV----TQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 268 MTDVLEEFPKLKDPKTGKPLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 218 DVIILLDSITRLARAYNTVIPASGKV--LTG--GVDSNALQRPKRFFG-AARNIEEG--- 269
DV ++ DS +R A A + SG++ + G G + + F+ A R + G
Sbjct: 325 DVALMADSTSRWAEALREI---SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 381
Query: 270 --GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
GS+++I G + V+ + + L+ LA +R +PAIN S
Sbjct: 382 RVGSVSVIGAVSPPGGDFSEPVVQNTLR-VVKVFWALDADLARRRHFPAINWLTS 435
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 41/235 (17%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
+TG RI+D++ P+ G + SGKS+ Q +A + +++ + ER E
Sbjct: 206 LTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSNAD----VVVYVGSGERGNE 261
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M R+V +IA+T + P + + A+ +
Sbjct: 262 MTDVLVEFPELTDPKTGGPLMHRTV---LIANTSNMPVAAREASIYVGVTIAEYFRDQGF 318
Query: 218 DVIILLDSITRLARAYNTV------IPASGKVLTGGVDSNALQRPKRFFGAARNI----E 267
V ++ DS +R A A + +PA G R F+ A +
Sbjct: 319 SVALMADSTSRWAEALREISSRLEEMPAE-----EGYPPYLAARLAAFYERAGKVITLGG 373
Query: 268 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
E G++TI+ G + V + G L+ LA +R +PAIN N S
Sbjct: 374 EEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAF-WRLDASLAFRRHFPAINWNGS 427
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGK------SIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ +D + PIG+GQR L++ ++GK +II Q + T + I + I ++
Sbjct: 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 210
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ + + V+++T + A + + K +I+ D
Sbjct: 211 STVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDD 270
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRF---FGAARNIEEGGSLTI 274
+++ A AY + P + G V S L+R + FG GGSLT
Sbjct: 271 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG-------GGSLT- 322
Query: 275 IATALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
A +IET + I + ++ LE L K + PAIN+ S +R
Sbjct: 323 -ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 373
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGK------SIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ +D + PIG+GQR L++ ++GK +II Q + T + I + I ++
Sbjct: 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 210
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ + + V+++T + A + + K +I+ D
Sbjct: 211 STVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDD 270
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRF---FGAARNIEEGGSLTI 274
+++ A AY + P + G V S L+R + FG GGSLT
Sbjct: 271 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG-------GGSLT- 322
Query: 275 IATALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
A +IET + I + ++ LE L K + PAIN+ S +R
Sbjct: 323 -ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 373
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGK------SIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ +D + PIG+GQR L++ ++GK +II Q + T + I + I ++
Sbjct: 194 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 253
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ + + V+++T + A + + K +I+ D
Sbjct: 254 STVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDD 313
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRF---FGAARNIEEGGSLTI 274
+++ A AY + P + G V S L+R + FG GGSLT
Sbjct: 314 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG-------GGSLT- 365
Query: 275 IATALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
A +IET + I + ++ LE L K + PAIN+ S +R
Sbjct: 366 -ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 416
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGK------SIILQHIAHAITTNHSEAIMIVMLIDERP 172
+ +D + PIG+GQR L++ ++GK +II Q + T + I + I ++
Sbjct: 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 210
Query: 173 EEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDS 225
V ++ + + V+++T + A + + K +I+ D
Sbjct: 211 STVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDD 270
Query: 226 ITRLARAYNTVI-----PASGKVLTGGV---DSNALQRPKRF---FGAARNIEEGGSLTI 274
+++ A AY + P + G V S L+R + FG GGSLT
Sbjct: 271 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG-------GGSLT- 322
Query: 275 IATALIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
A +IET + I + ++ LE L K + PAIN+ S +R
Sbjct: 323 -ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 373
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 39/235 (16%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P KG + + SGK++ H + ++I + ER E
Sbjct: 212 ITGQRVIDTFFPQAKGGTAAIPGAFGSGKTV----TQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 268 MTDVLEEFPKLKDPKTGKPLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 218 DVIILLDSITRLARAYNTVIPASGKV--LTG--GVDSNALQRPKRFFG-AARNIEEG--- 269
DV ++ DS +R A A + SG++ + G G + + F+ A R + G
Sbjct: 325 DVALMADSTSRWAEALREI---SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 381
Query: 270 --GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
GS+++I G + V+ + + L+ LA +R +PAIN S
Sbjct: 382 RVGSVSVIGAVSPPGGDFSEPVVQNTLR-VVKVFWALDADLARRRHFPAINWLTS 435
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P KG + SGK++ H + ++I + ER E
Sbjct: 212 ITGQRVIDTFFPQAKGGTAAIPGPFGSGKTV----TQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 268 MTDVLEEFPKLKDPKTGKPLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 218 DVIILLDSITRLARAYNTVIPASGKV--LTG--GVDSNALQRPKRFFG-AARNIEEG--- 269
DV ++ DS +R A A + SG++ + G G + + F+ A R + G
Sbjct: 325 DVALMADSTSRWAEALREI---SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 381
Query: 270 --GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
GS+++I G + V+ + + L+ LA +R +PAIN S
Sbjct: 382 RVGSVSVIGAVSPPGGDFSEPVVQNTLR-VVKVFWALDADLARRRHWPAINWLTS 435
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+ +D + PIG+GQR L++ ++GK+ + I I S I + I ++ ++ +
Sbjct: 151 KAVDSMIPIGRGQRELIIGDRQTGKTAL--AIDAIINQRDSGIKCIYVAIGQKASTISNV 208
Query: 179 QRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231
R + V+ +T E A + + +D +I+ D +++ A
Sbjct: 209 VRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAV 268
Query: 232 AYNTV 236
AY +
Sbjct: 269 AYRQI 273
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P KG + SGK++ H + ++I + ER E
Sbjct: 212 ITGQRVIDTFFPQAKGGTAAIPGPFASGKTV----TQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 268 MTDVLEEFPKLKDPKTGKPLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 218 DVIILLDSITRLARAYNTVIPASGKV--LTG--GVDSNALQRPKRFFG-AARNIEEG--- 269
DV ++ DS +R A A + SG++ + G G + + F+ A R + G
Sbjct: 325 DVALMADSTSRWAEALREI---SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 381
Query: 270 --GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
GS+++I G + V+ + + L+ LA +R +PAIN S
Sbjct: 382 RVGSVSVIGAVSPPGGDFSEPVVQNTLR-VVKVFWALDADLARRRHFPAINWLTS 435
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 24/223 (10%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+ ID PIG+GQR L++ ++GK+ I I I I + I ++ + +
Sbjct: 164 KAIDSXIPIGRGQRELIIGDRQTGKTAI--AIDTIINQKGQGVYCIYVAIGQKKSAIARI 221
Query: 179 QRSVR-------GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231
+R V+ ++ +PA + +D +++ D +++ A
Sbjct: 222 IDKLRQYGAXEYTTVVVASASDPASLQYIAPYAGCAXGEYFAYSGRDALVVYDDLSKHAV 281
Query: 232 AYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEEGGSLTIIATALIET- 282
AY + P + G + S L+R R + GGSLT A ++ET
Sbjct: 282 AYRQLSLLXRRPPGREAYPGDIFYLHSRLLERAVRL----NDKLGGGSLT--ALPIVETQ 335
Query: 283 GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+ + I + +++LE L PAIN+ S +R
Sbjct: 336 ANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSR 378
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P KG + SGK++ H + ++I + ER E
Sbjct: 212 ITGQRVIDTFFPQAKGGTAAIPGPFGSGKTV----TQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 268 MTDVLEEFPKLKDPKTGKPLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 218 DVIILLDSITRLARAYNTVIPASGKV--LTG--GVDSNALQRPKRFFG-AARNIEEG--- 269
DV ++ DS +R A A + SG++ + G G + + F+ A R + G
Sbjct: 325 DVALMADSTSRWAEALREI---SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 381
Query: 270 --GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
GS+++I G + V+ + + L+ LA +R +PAIN S
Sbjct: 382 RVGSVSVIGAVSPPGGDFSEPVVQNTLR-VVKVFWALDADLARRRHFPAINWLTS 435
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P KG + SGK++ H + ++I + ER E
Sbjct: 212 ITGQRVIDTFFPQAKGGTAAIPGPFGSGKTV----TQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 268 MTDVLEEFPKLKDPKTGKPLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 218 DVIILLDSITRLARAYNTVIPASGKV--LTG--GVDSNALQRPKRFFG-AARNIEEG--- 269
DV ++ DS +R A A + SG++ + G G + + F+ A R + G
Sbjct: 325 DVALMADSTSRWAEALREI---SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 381
Query: 270 --GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
GS+++I G + V+ + + L+ LA +R +PAIN S
Sbjct: 382 RVGSVSVIGAVSPPGGDFSEPVVQNTLR-VVKVFWALDADLARRRHFPAINWLTS 435
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P KG + SGK++ H + ++I + ER E
Sbjct: 212 ITGQRVIDTFFPQAKGGTAAIPGPFGSGKAV----TQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 268 MTDVLEEFPKLKDPKTGKPLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 218 DVIILLDSITRLARAYNTVIPASGKV--LTG--GVDSNALQRPKRFFG-AARNIEEG--- 269
DV ++ DS +R A A + SG++ + G G + + F+ A R + G
Sbjct: 325 DVALMADSTSRWAEALREI---SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 381
Query: 270 --GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
GS+++I G + V+ + + L+ LA +R +PAIN S
Sbjct: 382 RVGSVSVIGAVSPPGGDFSEPVVQNTLR-VVKVFWALDADLARRRHFPAINWLTS 435
>pdb|1M11|3 Chain 3, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 238
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 429 GFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
GF L + GSN +SDD + SPS + +F++ + GE+ L++I +V+
Sbjct: 1 GFPVLNTPGSNQFMTSDD-FQSPSAMPQFDVTPHMDIPGEVH---------NLMEIAEVD 50
Query: 489 VASPKSGKSIILQHI-AHAI---TTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 540
P + + LQ + A+ I T NH + + E V +R++ GE++
Sbjct: 51 SVVPVNNIKVNLQSMDAYHIEVNTGNHQGEKIFAFQMQPGLESV--FKRTLMGEIL 104
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P KG + SGK++ H + ++I + ER E
Sbjct: 212 ITGQRVIDTFFPQAKGGTAAIPGPFGSGKTV----TQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 175 VTE-----------------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+T+ M+R+V +IA+T + P + A+ +M
Sbjct: 268 MTDVLEEFPKLKDPKTGKPLMERTV---LIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 218 DVIILLDSITRLARAYNTVIPASGKV--LTG--GVDSNALQRPKRFFG-AARNIEEG--- 269
DV ++ DS +R A A + SG++ + G G + + F+ A R + G
Sbjct: 325 DVALMADSTSRWAEALREI---SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 381
Query: 270 --GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322
GS+++I G + V+ + + L+ LA +R +PAIN S
Sbjct: 382 RVGSVSVIGAVSPPGGDFSEPVVQNTLR-VVKVFWALDADLARRRHFPAINWLTS 435
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 382 AETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
A+T +DLE NS+K L +F + T + + G L+ LP+G
Sbjct: 28 AQTTYLDLETNSLKSLPN-----GVFDELTSLTQLYLGGNKLQSLPNG 70
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 49/255 (19%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
ITG R+ID P+ KG + +GK+++ IA + +++ + ER E
Sbjct: 217 ITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSDVD----LVVYVGCGERGNE 272
Query: 175 VTEM-----------------QRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
T++ +R+V +IA+T + P + A+ +
Sbjct: 273 XTDVVNEFPELIDPNTGESLXERTV---LIANTSNXPVAAREASIYTGITIAEYFRDXGY 329
Query: 218 DVIILLDSITRLARAYNTVIPASGKV-----------LTGGVDSNALQRPKRFFGAARNI 266
DV I DS +R A A SG++ G + +R R +
Sbjct: 330 DVAIXADSTSRWAEALRE---XSGRLEEXPGDEGYPAYLGSRLAEYYERSGRVIALGSDQ 386
Query: 267 EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS---- 322
E GS+T I +A+ +G + + + + + L+ LA+KR +P+IN +S
Sbjct: 387 RE-GSITAI-SAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLY 444
Query: 323 ----GTRREELLIQD 333
G +++L QD
Sbjct: 445 STEVGRYXDQILQQD 459
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 272 LTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREE 328
L IA AL E + ++DVI G +E + R+A + Y A+ LN T EE
Sbjct: 282 LASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFEE 338
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 17/215 (7%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE---- 174
++++L+AP +G + L GK++++ + + I H + + ER E
Sbjct: 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVG-ERTREGNDL 212
Query: 175 VTEMQRS--VRGEVIAST--------FDEPAYRHVQVAEMVLEKAKRLVEM-KKDVIILL 223
EM+ S + + IA + +EP ++V L A+ ++ ++DV++ +
Sbjct: 213 YMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFI 272
Query: 224 DSITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETG 283
D+I R +A + V G++ + L + GS+T I +
Sbjct: 273 DNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPAD 332
Query: 284 SRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAIN 318
D F V L R LA K +YPA++
Sbjct: 333 DLTDPAPATTFAHLDATTV-LSRGLAAKGIYPAVD 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,244,363
Number of Sequences: 62578
Number of extensions: 659237
Number of successful extensions: 1496
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1412
Number of HSP's gapped (non-prelim): 87
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)