BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3765
(592 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7NXP1|RHO_CHRVO Transcription termination factor Rho OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=rho PE=3 SV=1
Length = 418
Score = 586 bits (1511), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/349 (78%), Positives = 319/349 (91%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE IFG+G+LEVLPDGFGFLRS ++Y+A DDIY+SPSQIRRFNLHTGD +EGEI
Sbjct: 42 QAKKGESIFGEGTLEVLPDGFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFAL+K+ KVNGE PE SK++ LF+NLTPL P + LER I ++ENITGRI
Sbjct: 102 RTPKDGERYFALVKVDKVNGEAPENSKHKILFENLTPLFPTEQFKLEREIRAEENITGRI 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDLI+PIGKGQR LLVA PKSGK+++LQHIAHAIT NH EA++IV+LIDERPEEVTEMQR
Sbjct: 162 IDLISPIGKGQRALLVAPPKSGKTVMLQHIAHAITANHPEAVLIVLLIDERPEEVTEMQR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEV++STFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PAS
Sbjct: 222 SVRGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPAS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATALI+TGSRMDDVIYEEFKGTGN
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIVATALIDTGSRMDDVIYEEFKGTGNS 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+HL+RR+AEKR++PA+N+N+SGTRREELL+ D+LQ+IWVLRKLLY +
Sbjct: 342 EIHLDRRMAEKRIFPALNINRSGTRREELLVPQDQLQRIWVLRKLLYPM 390
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 96/129 (74%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PKSGK+++LQHIAHAIT NH EA++IV+LIDERPEEVTEMQRSVRGEV++STFDEPA
Sbjct: 177 VAPPKSGKTVMLQHIAHAITANHPEAVLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NALQR
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 90/115 (78%)
Query: 386 TIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445
I E++ RLRKQ+L+FA+ K + K GE IFG+G+LEVLPDGFGFLRS ++Y+A D
Sbjct: 18 AISNEIDGANRLRKQDLIFALLKNQAKKGESIFGEGTLEVLPDGFGFLRSPDTSYLAGPD 77
Query: 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
DIY+SPSQIRRFNLHTG +GEIR PK+GERYFAL+K+ KVN +P++ K IL
Sbjct: 78 DIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVNGEAPENSKHKIL 132
>sp|Q06447|RHO_NEIGO Transcription termination factor Rho OS=Neisseria gonorrhoeae
GN=rho PE=3 SV=1
Length = 419
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 250/347 (72%), Positives = 309/347 (89%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE G+LE+LPDGFGFLRS ++Y+A DDIY+SP+QIRRFNLHTGD +EG +RV
Sbjct: 44 KKGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRV 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK+ ERYFAL+++ +NG+ PE+ +++ LF+NLTPL P + L LER+++S+EN+TGR ID
Sbjct: 104 PKDNERYFALVRLDSINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQR LLVA PK GK+++L++IAH +T N+ E +IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRALLVAPPKIGKTVMLENIAHEVTANYPEVELIVLLIDERPEEVTEMSRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQVAEMVLEKAKR+VE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 RGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
+LTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+
Sbjct: 284 ILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL+RR+AEKR++PAIN+NKSGTRREELL+ +D+LQ++W+LRK L+ +
Sbjct: 344 HLDRRIAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPM 390
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/295 (44%), Positives = 168/295 (56%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE I+ + R RKQ+L+FAI ++ K GE G+LE+LPDGFGFLRS +
Sbjct: 15 LELAEEHGIE----NANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPDGFGFLRSADT 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPK----- 493
+Y+A DDIY+SP+QIRRFNLHTG +G +RVPK+ ERYFAL+++ +N P+
Sbjct: 71 SYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEVCRHK 130
Query: 494 ---------------------------SGKSI------------------------ILQH 502
+G++I +L++
Sbjct: 131 ILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPPKIGKTVMLEN 190
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH +T N+ E +IV+LIDERPEEVTEM RSVRGEV++STFDEPA
Sbjct: 191 IAHEVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKA 250
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 251 KRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRFFGAAR 305
>sp|Q9PA21|RHO_XYLFA Transcription termination factor Rho OS=Xylella fastidiosa (strain
9a5c) GN=rho PE=3 SV=1
Length = 411
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/348 (71%), Positives = 301/348 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQIRRFNL TGD + G IR
Sbjct: 36 TRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIR 95
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK+GERYFAL + +NGE E SKN+ LF+NLTPL P+K LER S E+ITGRI+
Sbjct: 96 FPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRIL 155
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL+AP GKGQR L+V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+
Sbjct: 156 DLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRT 215
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
VRGEVI+STFDEPA RHVQVAEMV+E+AKRL+E KKDV+ILLDSITRLARAYN V+P+SG
Sbjct: 216 VRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSG 275
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGN E
Sbjct: 276 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCE 335
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+HL RR+AEKRVYPAI++N+SGTRRE+LLI+ D LQKIW+LRKLL+ +
Sbjct: 336 LHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPM 383
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK++++Q +A AITTNH E +IV+LIDERPEEVTEMQR+VRGEVI+STFDEPA
Sbjct: 170 VSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPA 229
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN V+P+SGKVLTGGVD+NAL R
Sbjct: 230 ARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHR 289
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 290 PKRFFGAAR 298
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%)
Query: 394 VKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQ 453
V R RKQ+++FA+ K T+ GE +F DG LE+LPDGFGFLR+ ++Y+A DD Y+SPSQ
Sbjct: 19 VARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQ 78
Query: 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
IRRFNL TG G IR PK+GERYFAL + +N ++ K+ IL
Sbjct: 79 IRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKIL 125
>sp|P0A295|RHO_SALTY Transcription termination factor Rho OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=rho PE=3 SV=1
Length = 419
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENARNKIL 132
>sp|P0A296|RHO_SALTI Transcription termination factor Rho OS=Salmonella typhi GN=rho
PE=3 SV=1
Length = 419
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK+ + ++ +++ LE ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFG
Sbjct: 6 LKNTPVSELITLGESMGLE--NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDK 123
Query: 492 PKSGKSIIL 500
P++ ++ IL
Sbjct: 124 PENARNKIL 132
>sp|P0AG33|RHO_SHIFL Transcription termination factor Rho OS=Shigella flexneri GN=rho
PE=3 SV=1
Length = 419
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>sp|P0AG30|RHO_ECOLI Transcription termination factor Rho OS=Escherichia coli (strain
K12) GN=rho PE=1 SV=1
Length = 419
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>sp|P0AG31|RHO_ECOL6 Transcription termination factor Rho OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=rho PE=3 SV=1
Length = 419
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>sp|P0AG32|RHO_ECO57 Transcription termination factor Rho OS=Escherichia coli O157:H7
GN=rho PE=3 SV=1
Length = 419
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/347 (71%), Positives = 303/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+NLTPLH L +ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
>sp|P52152|RHO_ALLVD Transcription termination factor Rho OS=Allochromatium vinosum
(strain ATCC 17899 / DSM 180 / NBRC 103801 / D) GN=rho
PE=3 SV=2
Length = 418
Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 304/349 (87%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+ K GE I+GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRF L TGD + G+I
Sbjct: 42 QAKKGEDIYGDGVLEILSDGFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI 120
R PK+GERYFALLK+ +N ++PE +K++ LF+N TPL +K L LE S E+IT R
Sbjct: 102 RPPKDGERYFALLKVNDINFDRPENAKSKILFENFTPLFAQKRLTLEIGNGSTEDITART 161
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
IDL+APIGKGQRGL+V+ PK+GK+++LQ+IA +I NH + +IV+LIDERPEEVTEM R
Sbjct: 162 IDLVAPIGKGQRGLIVSPPKAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMAR 221
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SVRGEVI+STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P+S
Sbjct: 222 SVRGEVISSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSS 281
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVLTGGVD+NALQRPKRFFGAARN+EEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNM
Sbjct: 282 GKVLTGGVDANALQRPKRFFGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNM 341
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
E+H++RR+AEKR++PAIN+N+SGTRREELL+ +LQK+W+LRK+L+ +
Sbjct: 342 EIHMDRRIAEKRIFPAININRSGTRREELLMGQAELQKMWILRKILHPM 390
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/302 (45%), Positives = 172/302 (56%), Gaps = 85/302 (28%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++A Q++D+E V R RKQ+L+FAI K + K GE I+GDG LE+L DGFG
Sbjct: 6 LKKMPVPNLVALAQSMDIE--GVGRSRKQDLIFAILKAQAKKGEDIYGDGVLEILSDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNG---------------- 475
FLRS ++Y+A DDIY+SPSQIRRF L TG G+IR PK+G
Sbjct: 64 FLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVNDINFDR 123
Query: 476 ----------ERYFALLKIKKVN------------------------------VASPKSG 495
E + L K++ V+ PK+G
Sbjct: 124 PENAKSKILFENFTPLFAQKRLTLEIGNGSTEDITARTIDLVAPIGKGQRGLIVSPPKAG 183
Query: 496 KSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------- 548
K+++LQ+IA +I NH + +IV+LIDERPEEVTEM RSVRGEVI+STFDEPA
Sbjct: 184 KTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHVQVA 243
Query: 549 --------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA 588
L + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGA
Sbjct: 244 EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGA 303
Query: 589 AR 590
AR
Sbjct: 304 AR 305
>sp|Q9HTV1|RHO_PSEAE Transcription termination factor Rho OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=rho PE=3 SV=1
Length = 419
Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/347 (71%), Positives = 304/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDSINFDRPENAKNKILFENLTPLFPNERMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTI+ATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+R++AEKRV+PAIN+N+SGTRREELL +D+LQ++W+LRK+L+ +
Sbjct: 344 PLDRKIAEKRVFPAININRSGTRREELLTSEDELQRMWILRKILHPM 390
Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA IT N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R RKQ+++FA+ KK K GE I GDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+ IL
Sbjct: 83 PSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSINFDRPENAKNKIL 132
>sp|P52155|RHO_PSEFC Transcription termination factor Rho OS=Pseudomonas fluorescens
biotype C GN=rho PE=3 SV=1
Length = 419
Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 302/347 (87%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE I GDG LE+L DGFGFLRS ++Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEEISGDGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIID 122
PK GERYFALLK+ +N ++PE +KN+ LF+NLTPL P + +E S E++TGR+ID
Sbjct: 104 PKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+V
Sbjct: 164 LCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV+ASTFDEP RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 RGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD++AL++PKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RR+AEKRV+PAIN+N+SGTRREELL DD+LQ++W+LRKLL+ +
Sbjct: 344 PLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPM 390
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA I N+ E +IV+LIDERPEEVTEMQR+VRGEV+ASTFDEP
Sbjct: 177 VAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPP 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTVIP+SGKVLTGGVD++AL++
Sbjct: 237 TRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEK 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 87/122 (71%), Gaps = 4/122 (3%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAE ++ + ++ R RKQ+++F++ KK K GE I GDG LE+L DGFGFLRS +
Sbjct: 15 LQLAE----EMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQDGFGFLRSADA 70
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSI 498
+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +N P++ K+
Sbjct: 71 SYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTINFDRPENAKNK 130
Query: 499 IL 500
IL
Sbjct: 131 IL 132
>sp|P57652|RHO_BUCAI Transcription termination factor Rho OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rho PE=3 SV=1
Length = 419
Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 303/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ ++
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRKEELLTLPDELQKMWILRKIIHPMS 391
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 91/131 (69%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
NL MP+ T + + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DG
Sbjct: 2 NLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN
Sbjct: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNY 121
Query: 490 ASPKSGKSIIL 500
P++ +S IL
Sbjct: 122 DKPENARSKIL 132
>sp|O51891|RHO_BUCAP Transcription termination factor Rho OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=rho PE=3 SV=2
Length = 419
Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/349 (70%), Positives = 302/349 (86%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ VN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNAVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L R++AEKRV+PAI+ N+SGTR+EELL D+LQK+W+LRK+++ ++
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRKEELLTLPDELQKMWILRKIIHPMS 391
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 90/131 (68%)
Query: 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDG 429
NL MP+ T + + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DG
Sbjct: 2 NLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61
Query: 430 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489
FGFLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN
Sbjct: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNAVNY 121
Query: 490 ASPKSGKSIIL 500
P++ +S IL
Sbjct: 122 DKPENARSKIL 132
>sp|P44619|RHO_HAEIN Transcription termination factor Rho OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rho PE=3
SV=1
Length = 420
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/345 (71%), Positives = 301/345 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFG G LE+LPDGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD +EG+IR
Sbjct: 44 AKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIR 103
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ +VN +KPE+S+++ LF+NLTPLH L +ER S E++T RI+
Sbjct: 104 PPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARIL 163
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ + +IV+LIDERPEEVTEMQRS
Sbjct: 164 DLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRS 223
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEVIASTFDEPA RHVQVAEMV+EKAKR VE KKDV+ILLDSITRLARAYNTV PASG
Sbjct: 224 VKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASG 283
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VI+EEFKGTGNME
Sbjct: 284 KILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNME 343
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+HL R++AE+RV+PAI+ +SGTR+E+LL D+LQK+W+LRK+L
Sbjct: 344 LHLSRKIAERRVFPAIDFKRSGTRKEDLLTTADELQKMWILRKIL 388
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 143/284 (50%), Gaps = 85/284 (29%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERI------------FG-----DGSLEVLPDGFGFL 433
+ ++ RLRKQ+++FAI K+ K GE I FG D S PD
Sbjct: 24 LENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVS 83
Query: 434 RSQ---------------------GSNYMA-------SSDDIYLSPSQIRRFNLHTGILW 465
SQ G Y A + D +S S+I NL T +
Sbjct: 84 PSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENL-TPLHA 142
Query: 466 KGEIRVPK-NGERYFALLKI-----------KKVNVASPKSGKSIILQHIAHAITTNHSE 513
+R+ + NG +I + + VA PK+GK+++LQ+IA +IT N+ +
Sbjct: 143 NSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYPD 202
Query: 514 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------------- 548
+IV+LIDERPEEVTEMQRSV+GEVIASTFDEPA
Sbjct: 203 VELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVV 262
Query: 549 --LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV PASGK+L+GGVD+NAL RPKRFFGAAR
Sbjct: 263 ILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAAR 306
>sp|Q89A22|RHO_BUCBP Transcription termination factor Rho OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rho PE=3 SV=1
Length = 419
Score = 521 bits (1343), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/349 (69%), Positives = 304/349 (87%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 43 AKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRII 121
PK GERYFALLK+ KVN +KPE ++++ LF+NLTPLH L +ER S E++T R++
Sbjct: 103 PPKEGERYFALLKVNKVNYDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
DL +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEM+R
Sbjct: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMRRL 222
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV+ASTFDEP+ RHVQV+EMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASG
Sbjct: 223 VKGEVVASTFDEPSSRHVQVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME
Sbjct: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L R++AEKRV+PAI+ N+SGTR+EELL + D+LQK+W+LRK+++ ++
Sbjct: 343 LPLSRKIAEKRVFPAIDYNRSGTRKEELLTKSDELQKMWILRKIIHPMS 391
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEM+R V+GEV+ASTFDEP+
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMRRLVKGEVVASTFDEPS 236
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYNTV+PASGKVLTGGVD+NAL R
Sbjct: 237 SRHVQVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 297 PKRFFGAAR 305
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 84/110 (76%)
Query: 391 VNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS 450
+ ++ R+RKQ+++F+I K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+S
Sbjct: 23 LENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVS 82
Query: 451 PSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
PSQIRRFNL TG G+IR PK GERYFALLK+ KVN P++ +S IL
Sbjct: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNKVNYDKPENARSKIL 132
>sp|Q1RIJ6|RHO_RICBR Transcription termination factor Rho OS=Rickettsia bellii (strain
RML369-C) GN=rho PE=3 SV=1
Length = 449
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/342 (69%), Positives = 292/342 (85%), Gaps = 1/342 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG IR PK
Sbjct: 73 GGSIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGRIRAPK 132
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
GERYFALLK+ KVN E P + +R FDNLTPL+P + L LE SK+ + R+I+L+
Sbjct: 133 EGERYFALLKVNKVNFEDPSKAYHRVNFDNLTPLYPDEKLGLELEDNSKD-FSTRVIELV 191
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRG
Sbjct: 192 APMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRG 251
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGKVL
Sbjct: 252 EVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVL 311
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+ L
Sbjct: 312 TGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEIVL 371
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 372 DRKIADKRIYPAIDITRSGTRKEDLLVDKIVLNKMWVLRRII 413
Score = 251 bits (642), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 140/290 (48%), Positives = 169/290 (58%), Gaps = 82/290 (28%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ +V LRKQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 42 QAQAEELKIENVSSLRKQELVFAILKKSVEQGGSIVGEGVLEVLPDGFGFLRSPEVNYLA 101
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP---------- 492
DDIY+SPSQIRRF L TG +G IR PK GERYFALLK+ KVN P
Sbjct: 102 GPDDIYISPSQIRRFGLRTGDTVEGRIRAPKEGERYFALLKVNKVNFEDPSKAYHRVNFD 161
Query: 493 ----------------------------------KSGKSIIL-----------QHIAHAI 507
K +++I+ Q+IAHAI
Sbjct: 162 NLTPLYPDEKLGLELEDNSKDFSTRVIELVAPMGKGQRALIVAPPRTGKTVLLQNIAHAI 221
Query: 508 TTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------------------- 548
TTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 222 TTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPASRHVQLAEMVIEKAKRLVE 281
Query: 549 --------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ + +LARAYNTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 282 HKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 331
>sp|Q9ZD24|RHO_RICPR Transcription termination factor Rho OS=Rickettsia prowazekii
(strain Madrid E) GN=rho PE=3 SV=1
Length = 457
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 75 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 134
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 135 AGERYFALLKVNRVNFEDPAKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 194
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 195 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 254
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 255 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 314
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 315 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 374
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 375 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 418
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 208 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 267
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 268 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 327
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 328 PKRFFGAAR 336
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 44 QVQAEELKIENISSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 103
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 104 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 153
>sp|Q4ULF7|RHO_RICFE Transcription termination factor Rho OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=rho PE=3 SV=1
Length = 458
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GGLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEELKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>sp|Q68WL0|RHO_RICTY Transcription termination factor Rho OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=rho PE=3 SV=2
Length = 457
Score = 497 bits (1280), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I GDG LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 75 GGLIVGDGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 134
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN + P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 135 AGERYFALLKVNRVNFDDPVNAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 194
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 195 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 254
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV+EKAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 255 RGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 314
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 315 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 374
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 375 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 418
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 208 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 267
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 268 SRHVQLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 327
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 328 PKRFFGAAR 336
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I GDG LEVLPDGFGFLRS NY+A
Sbjct: 44 QVQAEELKIENISSLLKQELVFAILKKSVEQGGLIVGDGVLEVLPDGFGFLRSPEVNYLA 103
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 104 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFDDP 153
>sp|Q92HL2|RHO_RICCN Transcription termination factor Rho OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=rho PE=3 SV=1
Length = 458
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 296/344 (86%), Gaps = 2/344 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I G+G LEVLPDGFGFLRS NY+A DDIY+SPSQIRRF L TGD VEG+IR PK
Sbjct: 76 GVLIVGEGVLEVLPDGFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPK 135
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP-KKL-LLLERNIESKENITGRIID 122
GERYFALLK+ +VN E P + +R FDNLTPL+P +KL L LE N + ++ + R+I+
Sbjct: 136 AGERYFALLKVNRVNFEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIE 195
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L+AP+GKGQR L+VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSV
Sbjct: 196 LVAPMGKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSV 255
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
RGEV++STFDEPA RHVQ+AEMV++KAKRLVE KKDV+IL+D+ITRLARAYNTV+P+SGK
Sbjct: 256 RGEVVSSTFDEPASRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGK 315
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARNIE GGSLTII TALIETGSRMD+VI+EEFKGTGN E+
Sbjct: 316 VLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEI 375
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L+R++A+KR+YPAI++ +SGTR+E+LL+ L K+WVLR+++
Sbjct: 376 VLDRKIADKRIYPAIDITRSGTRKEDLLVDKIILNKMWVLRRII 419
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+++LQ+IAHAITTN+ E +IV+LIDERPEEVT+MQRSVRGEV++STFDEPA
Sbjct: 209 VAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPA 268
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
+ + +LARAYNTV+P+SGKVLTGGVD+NALQR
Sbjct: 269 SRHVQLAEMVIKKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQR 328
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 329 PKRFFGAAR 337
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 383 ETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMA 442
+ Q +L++ ++ L KQEL+FAI KK + G I G+G LEVLPDGFGFLRS NY+A
Sbjct: 45 QAQAEELKIENINSLLKQELVFAILKKSVEQGVLIVGEGVLEVLPDGFGFLRSPEVNYLA 104
Query: 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
DDIY+SPSQIRRF L TG +G+IR PK GERYFALLK+ +VN P
Sbjct: 105 GPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVNFEDP 154
>sp|P52156|RHO_RHOS4 Transcription termination factor Rho OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rho
PE=3 SV=1
Length = 422
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/349 (64%), Positives = 292/349 (83%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G + GDG LEVL DGFGFLRS +NY+ DDIY+SP +R+F+L TGD +EG I P+
Sbjct: 50 GYEVGGDGVLEVLQDGFGFLRSPEANYLPGPDDIYVSPEILRQFSLRTGDTIEGVIVAPR 109
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
ERYF+L ++ K+N + PE ++++ FDNLTPL+P + L +E + + ++ + RIIDL+
Sbjct: 110 ENERYFSLTRVTKINFDDPERARHKVHFDNLTPLYPDERLKMEVDDPTMKDRSARIIDLV 169
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQRGL+VA P++GK+++LQ+IAH+I TNH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 170 APIGKGQRGLIVAPPRTGKTVLLQNIAHSIATNHPECYLIVLLIDERPEEVTDMQRSVKG 229
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHV VAEMV+EKAKRLVE K+DV+ILLDSITRL RA+NTV+P+SGKVL
Sbjct: 230 EVVSSTFDEPATRHVAVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVL 289
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 290 TGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVL 349
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTS 353
+R++A+KRV+PA+++ KSGTR+E+LL+ LQK +VLR++L + T
Sbjct: 350 DRKVADKRVFPAMDILKSGTRKEDLLVDKSDLQKTYVLRRILNPMGTTD 398
Score = 189 bits (481), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 157/295 (53%), Gaps = 87/295 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L +AE + E+ + +RK E+MF+I K+ + G + GDG LEVL DGFGFLRS +
Sbjct: 19 LAMAE----EWEIENAPSMRKGEMMFSILKEHAEEGYEVGGDGVLEVLQDGFGFLRSPEA 74
Query: 439 NYMASSDDI------------------------------YLSPSQIRRFN---------- 458
NY+ DDI Y S +++ + N
Sbjct: 75 NYLPGPDDIYVSPEILRQFSLRTGDTIEGVIVAPRENERYFSLTRVTKINFDDPERARHK 134
Query: 459 --------LHTGILWKGEIRVPKNGERYFALLKI--------KKVNVASPKSGKSIILQH 502
L+ K E+ P +R ++ + + + VA P++GK+++LQ+
Sbjct: 135 VHFDNLTPLYPDERLKMEVDDPTMKDRSARIIDLVAPIGKGQRGLIVAPPRTGKTVLLQN 194
Query: 503 IAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------- 548
IAH+I TNH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 195 IAHSIATNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVAVAEMVIEKA 254
Query: 549 -------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RA+NTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 255 KRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 309
>sp|O83281|RHO_TREPA Transcription termination factor Rho OS=Treponema pallidum (strain
Nichols) GN=rho PE=3 SV=1
Length = 519
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/346 (64%), Positives = 296/346 (85%), Gaps = 5/346 (1%)
Query: 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIR 61
T+ G IF GSLE+LPDG+GFLRS ++Y+ SDDIY+SPSQIR FNL TGD + G+IR
Sbjct: 142 TENGGVIFASGSLEILPDGYGFLRSPQNSYLPGSDDIYVSPSQIRLFNLKTGDTIYGQIR 201
Query: 62 VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESK-ENITGRI 120
PK GER+FA+L+++ VN E+ ++R FD+LTPL+P++ L N+E++ E+I+ R+
Sbjct: 202 SPKEGERFFAMLRVETVNFEEVAKVQDRVPFDSLTPLYPREKL----NLETRTEDISTRV 257
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
++L PIGKGQR L+VA P++GK+I++Q IA+AIT NH E +IV+LIDERPEEVT+M+R
Sbjct: 258 MNLFCPIGKGQRALIVAPPRTGKTILMQKIANAITQNHPEVYLIVLLIDERPEEVTDMER 317
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
+V EVI+STFDE A RHVQ+AE+VLE+AKRLVE +KDV+ILLDSITRLARAYN +P S
Sbjct: 318 TVDAEVISSTFDEQATRHVQIAEIVLERAKRLVEHRKDVVILLDSITRLARAYNQTMPTS 377
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVDSNAL +PKRFFGAARN+EEGGSLTIIATALIETGSRMD+VI+EEFKGTGNM
Sbjct: 378 GKVLSGGVDSNALHKPKRFFGAARNVEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNM 437
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E++L+RRL+++R++PA+++ KSGTR+EELL+ ++++Q+IWVLRK++
Sbjct: 438 EINLDRRLSDRRLFPAVSIKKSGTRKEELLLTEEEMQRIWVLRKVI 483
Score = 219 bits (558), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/274 (43%), Positives = 155/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++K +++F + K T+ G IF GSLE+LPDG+GFLRS ++Y+ SDDIY+SPSQIR
Sbjct: 128 MKKSDIIFHVLKNHTENGGVIFASGSLEILPDGYGFLRSPQNSYLPGSDDIYVSPSQIRL 187
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG G+IR PK GER+FA+L+++ VN
Sbjct: 188 FNLKTGDTIYGQIRSPKEGERFFAMLRVETVNFEEVAKVQDRVPFDSLTPLYPREKLNLE 247
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA P++GK+I++Q IA+AIT NH E +IV+LIDE
Sbjct: 248 TRTEDISTRVMNLFCPIGKGQRALIVAPPRTGKTILMQKIANAITQNHPEVYLIVLLIDE 307
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M+R+V EVI+STFDE A L + +LA
Sbjct: 308 RPEEVTDMERTVDAEVISSTFDEQATRHVQIAEIVLERAKRLVEHRKDVVILLDSITRLA 367
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGKVL+GGVDSNAL +PKRFFGAAR
Sbjct: 368 RAYNQTMPTSGKVLSGGVDSNALHKPKRFFGAAR 401
>sp|P0CH93|RHO2_EHRCR Transcription termination factor Rho 2 OS=Ehrlichia chaffeensis
(strain Arkansas) GN=rho2 PE=3 SV=1
Length = 422
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/338 (64%), Positives = 281/338 (83%), Gaps = 3/338 (0%)
Query: 15 EVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLK 74
E+L DGFGFLRS +NY AS DD+Y+S QI++FNL TGD V GEIR P ERYF L+K
Sbjct: 57 EILSDGFGFLRSPEANYAASGDDVYISAGQIKKFNLRTGDIVSGEIRAPSEKERYFTLVK 116
Query: 75 IKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIE---SKENITGRIIDLIAPIGKGQ 131
+N + FD+L PL+P++ +LLE N SK++I+ R+ID++AP+GKGQ
Sbjct: 117 AHSINFTDMAKLQRYVHFDDLIPLYPEERILLECNDPISVSKKDISMRVIDIVAPLGKGQ 176
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
R L+VA P++GK+IILQ IAH+I+ NH + +IV+LI ERPEEVT+M RSV+GEV++STF
Sbjct: 177 RALIVAPPRAGKTIILQQIAHSISVNHPDIELIVLLIGERPEEVTDMCRSVKGEVVSSTF 236
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DEP YRHVQ+AE+V+EKAKR+VE KK+V+ILLDSITRLARAYN+VIP+SGKVLTGGVDSN
Sbjct: 237 DEPGYRHVQLAEIVIEKAKRMVEHKKNVVILLDSITRLARAYNSVIPSSGKVLTGGVDSN 296
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
ALQRPKRFFGAARNIE GGSLTIIATALIETGS+MD+VI+EEFKGTGN E+ L+R++++K
Sbjct: 297 ALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCEIILDRKISDK 356
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
RVYPAI+++KSGTR+E++LI L+K+W+LR+LL S+
Sbjct: 357 RVYPAIDISKSGTRKEDMLIDSVCLKKVWLLRRLLSSM 394
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+IILQ IAH+I+ NH + +IV+LI ERPEEVT+M RSV+GEV++STFDEP
Sbjct: 181 VAPPRAGKTIILQQIAHSISVNHPDIELIVLLIGERPEEVTDMCRSVKGEVVSSTFDEPG 240
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN+VIP+SGKVLTGGVDSNALQR
Sbjct: 241 YRHVQLAEIVIEKAKRMVEHKKNVVILLDSITRLARAYNSVIPSSGKVLTGGVDSNALQR 300
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 301 PKRFFGAAR 309
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 65/101 (64%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL V S R+ KQE++F + KK G G G +E+L DGFGFLRS +NY AS DD+
Sbjct: 21 DLGVVSNGRMLKQEIIFHLMKKVVSDGGAAIGGGVVEILSDGFGFLRSPEANYAASGDDV 80
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
Y+S QI++FNL TG + GEIR P ERYF L+K +N
Sbjct: 81 YISAGQIKKFNLRTGDIVSGEIRAPSEKERYFTLVKAHSIN 121
>sp|P0CH92|RHO1_EHRCR Transcription termination factor Rho 1 OS=Ehrlichia chaffeensis
(strain Arkansas) GN=rho1 PE=3 SV=1
Length = 422
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/338 (64%), Positives = 281/338 (83%), Gaps = 3/338 (0%)
Query: 15 EVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLK 74
E+L DGFGFLRS +NY AS DD+Y+S QI++FNL TGD V GEIR P ERYF L+K
Sbjct: 57 EILSDGFGFLRSPEANYAASGDDVYISAGQIKKFNLRTGDIVSGEIRAPSEKERYFTLVK 116
Query: 75 IKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIE---SKENITGRIIDLIAPIGKGQ 131
+N + FD+L PL+P++ +LLE N SK++I+ R+ID++AP+GKGQ
Sbjct: 117 AHSINFTDMAKLQRYVHFDDLIPLYPEERILLECNDPISVSKKDISMRVIDIVAPLGKGQ 176
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
R L+VA P++GK+IILQ IAH+I+ NH + +IV+LI ERPEEVT+M RSV+GEV++STF
Sbjct: 177 RALIVAPPRAGKTIILQQIAHSISVNHPDIELIVLLIGERPEEVTDMCRSVKGEVVSSTF 236
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DEP YRHVQ+AE+V+EKAKR+VE KK+V+ILLDSITRLARAYN+VIP+SGKVLTGGVDSN
Sbjct: 237 DEPGYRHVQLAEIVIEKAKRMVEHKKNVVILLDSITRLARAYNSVIPSSGKVLTGGVDSN 296
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
ALQRPKRFFGAARNIE GGSLTIIATALIETGS+MD+VI+EEFKGTGN E+ L+R++++K
Sbjct: 297 ALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCEIILDRKISDK 356
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
RVYPAI+++KSGTR+E++LI L+K+W+LR+LL S+
Sbjct: 357 RVYPAIDISKSGTRKEDMLIDSVCLKKVWLLRRLLSSM 394
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+IILQ IAH+I+ NH + +IV+LI ERPEEVT+M RSV+GEV++STFDEP
Sbjct: 181 VAPPRAGKTIILQQIAHSISVNHPDIELIVLLIGERPEEVTDMCRSVKGEVVSSTFDEPG 240
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARAYN+VIP+SGKVLTGGVDSNALQR
Sbjct: 241 YRHVQLAEIVIEKAKRMVEHKKNVVILLDSITRLARAYNSVIPSSGKVLTGGVDSNALQR 300
Query: 582 PKRFFGAAR 590
PKRFFGAAR
Sbjct: 301 PKRFFGAAR 309
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 65/101 (64%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL V S R+ KQE++F + KK G G G +E+L DGFGFLRS +NY AS DD+
Sbjct: 21 DLGVVSNGRMLKQEIIFHLMKKVVSDGGAAIGGGVVEILSDGFGFLRSPEANYAASGDDV 80
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
Y+S QI++FNL TG + GEIR P ERYF L+K +N
Sbjct: 81 YISAGQIKKFNLRTGDIVSGEIRAPSEKERYFTLVKAHSIN 121
>sp|P33561|RHO_BORBU Transcription termination factor Rho OS=Borrelia burgdorferi
(strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=rho
PE=3 SV=3
Length = 515
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/335 (63%), Positives = 282/335 (84%), Gaps = 3/335 (0%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G L+VL DG+GFLR+ ++Y++ +D+Y+SPSQIR FNL TGD + G+IR P++GER+FA
Sbjct: 151 GVLDVLSDGYGFLRTASNSYLSGGNDVYVSPSQIRLFNLRTGDILYGQIRSPRDGERFFA 210
Query: 72 LLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQ 131
++KIK +N + P ++NR FDNLTPL+P L LE NI+ R+I+L +PIGKGQ
Sbjct: 211 MVKIKSINDQDPTFAQNRIPFDNLTPLYPNVKLNLEY---ENCNISTRLINLFSPIGKGQ 267
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
R L+V+ PK+GK+ +LQ IA+AITTN+S+ I++++LIDERPEEVT+M RSV+GEVIAS F
Sbjct: 268 RALIVSPPKAGKTTLLQKIANAITTNYSDVILMILLIDERPEEVTDMIRSVKGEVIASNF 327
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DE A RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYN +P SGK+L+GGVDSN
Sbjct: 328 DEQASRHVQVAEMVIEKAKRLVENKKDVVILLDSITRLARAYNQTMPTSGKILSGGVDSN 387
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
AL +PKRFFG+ARNIEEGGSLTIIATAL++TGS+MD+VI+EEFK TGNME+ L+R LA++
Sbjct: 388 ALHKPKRFFGSARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKSTGNMELILDRSLADR 447
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
R++PAIN+ KSGTR+EELL+ +++ KI ++R++L
Sbjct: 448 RLFPAINIKKSGTRKEELLLSEEERSKILLIRRIL 482
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 155/274 (56%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
++K EL+F + K ++ + G L+VL DG+GFLR+ ++Y++ +D+Y+SPSQIR
Sbjct: 127 MKKTELIFLLVKILSENNIDVLFTGVLDVLSDGYGFLRTASNSYLSGGNDVYVSPSQIRL 186
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL TG + G+IR P++GER+FA++KIK +N
Sbjct: 187 FNLRTGDILYGQIRSPRDGERFFAMVKIKSINDQDPTFAQNRIPFDNLTPLYPNVKLNLE 246
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
V+ PK+GK+ +LQ IA+AITTN+S+ I++++LIDE
Sbjct: 247 YENCNISTRLINLFSPIGKGQRALIVSPPKAGKTTLLQKIANAITTNYSDVILMILLIDE 306
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+M RSV+GEVIAS FDE A L + +LA
Sbjct: 307 RPEEVTDMIRSVKGEVIASNFDEQASRHVQVAEMVIEKAKRLVENKKDVVILLDSITRLA 366
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
RAYN +P SGK+L+GGVDSNAL +PKRFFG+AR
Sbjct: 367 RAYNQTMPTSGKILSGGVDSNALHKPKRFFGSAR 400
>sp|O67031|RHO_AQUAE Transcription termination factor Rho OS=Aquifex aeolicus (strain
VF5) GN=rho PE=3 SV=1
Length = 436
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/346 (61%), Positives = 278/346 (80%), Gaps = 7/346 (2%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
+F G LE+LP+G+GFLR +NYM S +D+Y++PSQI++F L TGD +EG R+P+ E
Sbjct: 66 VFVKGVLEILPEGYGFLRMPENNYMPSWNDVYVAPSQIKKFGLRTGDTIEGFARLPRENE 125
Query: 68 RYFALLKIKKVNG--EKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
+Y AL++++ VNG PE+ K R F+ LTPLHP + LE + ++ R++ LIA
Sbjct: 126 KYKALIRMESVNGLPPDPEILKRRPQFEKLTPLHPMERFKLEYD---PNELSTRVVSLIA 182
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-- 183
PIGKGQRGL+VA PK+GK+++LQ IA AI NH E +I++LIDERPEEVTEM+R V+
Sbjct: 183 PIGKGQRGLIVAPPKAGKTVLLQKIAQAIIRNHPEVYLIILLIDERPEEVTEMRRIVKDK 242
Query: 184 GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKV 243
EV+ASTFDEP RH+QVAE+V+EKAKR+VE+KKDV+IL+DS+TR RA N V P +G+V
Sbjct: 243 AEVVASTFDEPPERHMQVAEIVVEKAKRMVELKKDVVILMDSLTRFTRASNAVTPPTGRV 302
Query: 244 LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVH 303
LTGG++ A QRPK+FFGAARNIEEGGSLTIIATAL+ETGS+MDDVIYEEFKGTGNME+H
Sbjct: 303 LTGGIEITAFQRPKKFFGAARNIEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNMEIH 362
Query: 304 LERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+RRL E+R++PAIN+ KSGTR+EELL++ +LQ+IWVLRK L ++
Sbjct: 363 LDRRLMERRIFPAINIEKSGTRKEELLLEPWELQRIWVLRKFLSTM 408
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 79/131 (60%), Gaps = 29/131 (22%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV--RGEVIASTFDE 546
VA PK+GK+++LQ IA AI NH E +I++LIDERPEEVTEM+R V + EV+ASTFDE
Sbjct: 193 VAPPKAGKTVLLQKIAQAIIRNHPEVYLIILLIDERPEEVTEMRRIVKDKAEVVASTFDE 252
Query: 547 PA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNAL 579
P + + + RA N V P +G+VLTGG++ A
Sbjct: 253 PPERHMQVAEIVVEKAKRMVELKKDVVILMDSLTRFTRASNAVTPPTGRVLTGGIEITAF 312
Query: 580 QRPKRFFGAAR 590
QRPK+FFGAAR
Sbjct: 313 QRPKKFFGAAR 323
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Query: 381 LAETQTI--DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
LAE Q I +L + L+K+EL+ I K + + +F G LE+LP+G+GFLR +
Sbjct: 28 LAELQKIGKELGLTRTTGLKKEELIEKILKAQLEKSRLVFVKGVLEILPEGYGFLRMPEN 87
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492
NYM S +D+Y++PSQI++F L TG +G R+P+ E+Y AL++++ VN P
Sbjct: 88 NYMPSWNDVYVAPSQIKKFGLRTGDTIEGFARLPRENEKYKALIRMESVNGLPP 141
>sp|P56466|RHO_HELPY Transcription termination factor Rho OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=rho PE=3 SV=1
Length = 438
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/351 (58%), Positives = 275/351 (78%), Gaps = 5/351 (1%)
Query: 1 KTKI--GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEG 58
KT++ G I G LE++PDG+GFLR ++ +D Y+SPSQIRRF L GD V G
Sbjct: 62 KTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTG 121
Query: 59 EIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG 118
++R PK+ E+Y+ALLKI+ +N + +NR LFDNLTPL P + + LE +TG
Sbjct: 122 QVRSPKDQEKYYALLKIEAINYSPSDEIRNRPLFDNLTPLFPDEQIKLEY---EPTKVTG 178
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
R++DL +P+GKGQR L+VA P++GK+ +++ +A IT+NH E +I++L+DERPEEVT+M
Sbjct: 179 RMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDM 238
Query: 179 QRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIP 238
QRSV+G+V +STFD PA H+++AE+VLE+AKR VEM KDV++LLDSITRLARAYN V P
Sbjct: 239 QRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTP 298
Query: 239 ASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTG 298
+SGKVL+GGVD+NAL RPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTG
Sbjct: 299 SSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTG 358
Query: 299 NMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
N E+ L R +A++R+YPA ++ KSGTR++ +L+ D+L K+WVLR ++ +
Sbjct: 359 NSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQM 409
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 152/282 (53%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L+V + + ++Q+LMF I K + G I G LE++PDG+GFLR ++ +D Y
Sbjct: 43 LKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTY 102
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRF L G + G++R PK+ E+Y+ALLKI+ +N
Sbjct: 103 VSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYSPSDEIRNRPLFDNLTPLF 162
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+ +++ +A IT+NH E
Sbjct: 163 PDEQIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVE 222
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+I++L+DERPEEVT+MQRSV+G+V +STFD PA
Sbjct: 223 LIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVL 282
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN V P+SGKVL+GGVD+NAL RPKRFFGAAR
Sbjct: 283 LDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAAR 324
>sp|Q9ZLS9|RHO_HELPJ Transcription termination factor Rho OS=Helicobacter pylori (strain
J99) GN=rho PE=3 SV=1
Length = 438
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/351 (58%), Positives = 275/351 (78%), Gaps = 5/351 (1%)
Query: 1 KTKI--GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEG 58
KT++ G I G LE++PDG+GFLR ++ +D Y+SPSQIRRF L GD V G
Sbjct: 62 KTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTG 121
Query: 59 EIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG 118
++R PK+ E+Y+ALLKI+ +N + KNR LFDNLTPL P + + LE +TG
Sbjct: 122 QVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEY---EPTKVTG 178
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
R++DL +P+GKGQR L+VA P++GK+ +++ +A IT+NH E +I++L+DERPEEVT+M
Sbjct: 179 RMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDM 238
Query: 179 QRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIP 238
QRSV+G+V +STFD PA H+++AE+VLE+AKR VEM KDV++LLDSITRLARAYN V P
Sbjct: 239 QRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTP 298
Query: 239 ASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTG 298
+SGKVL+GGVD+NAL RPKRFFGAARNIEEGGSLTIIATALIETGSRMD+VI+EEFKGTG
Sbjct: 299 SSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTG 358
Query: 299 NMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
N E+ L R +A++R+YPA ++ KSGTR++ +L+ D+L K+WVLR ++ +
Sbjct: 359 NSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQM 409
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 152/282 (53%), Gaps = 80/282 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L+V + + ++Q+LMF I K + G I G LE++PDG+GFLR ++ +D Y
Sbjct: 43 LKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTY 102
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+SPSQIRRF L G + G++R PK+ E+Y+ALLKI+ +N
Sbjct: 103 VSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLF 162
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA P++GK+ +++ +A IT+NH E
Sbjct: 163 PDEQIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVE 222
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+I++L+DERPEEVT+MQRSV+G+V +STFD PA
Sbjct: 223 LIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVL 282
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN V P+SGKVL+GGVD+NAL RPKRFFGAAR
Sbjct: 283 LDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAAR 324
>sp|Q03222|RHO_BACSU Transcription termination factor Rho OS=Bacillus subtilis (strain
168) GN=rho PE=3 SV=3
Length = 427
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/341 (60%), Positives = 275/341 (80%), Gaps = 8/341 (2%)
Query: 8 IFGDGSLEVL-PDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNG 66
+F +G LE++ +GFGFLR NY SS+DIY+S SQIRRF+L GD V G++R PK
Sbjct: 52 LFMEGVLEIIQSEGFGFLRP--INYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKEN 109
Query: 67 ERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKEN-ITGRIIDLIA 125
ERY+ LL ++ VNG+ PE +K R F LTPL+P + ++LE +K N ++ RI+D++A
Sbjct: 110 ERYYGLLHVEAVNGDDPESAKERVHFPALTPLYPDRQMVLE----TKPNFLSTRIMDMMA 165
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
P+G GQRGL+VA PK+GK+++L+ IA++IT N EA +IV+LIDERPEEVT+++RSV G+
Sbjct: 166 PVGFGQRGLIVAPPKAGKTMLLKEIANSITANQPEAELIVLLIDERPEEVTDIERSVAGD 225
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
V++STFDE H++VAE+VLE+A RLVE KKDVIIL+DSITRLARAYN VIP SG+ L+
Sbjct: 226 VVSSTFDEVPENHIKVAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLS 285
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GG+D A RPKRFFGAARNIEEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNME+HL+
Sbjct: 286 GGIDPAAFHRPKRFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLD 345
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
R LAE+R++PAI++ +SGTR+EELL+ + L ++W +RK +
Sbjct: 346 RSLAERRIFPAIDIRRSGTRKEELLVPKEHLDRLWSIRKTM 386
Score = 179 bits (454), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 149/282 (52%), Gaps = 83/282 (29%)
Query: 390 EVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVL-PDGFGFLRSQGSNYMASSDDIY 448
+++ +L K+EL+FAI K + + +F +G LE++ +GFGFLR NY SS+DIY
Sbjct: 25 KISYYSKLTKKELIFAILKANAEQEDLLFMEGVLEIIQSEGFGFLRP--INYSPSSEDIY 82
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------- 488
+S SQIRRF+L G G++R PK ERY+ LL ++ VN
Sbjct: 83 ISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEAVNGDDPESAKERVHFPALTPLY 142
Query: 489 ---------------------------------VASPKSGKSIILQHIAHAITTNHSEAI 515
VA PK+GK+++L+ IA++IT N EA
Sbjct: 143 PDRQMVLETKPNFLSTRIMDMMAPVGFGQRGLIVAPPKAGKTMLLKEIANSITANQPEAE 202
Query: 516 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA--------------------------- 548
+IV+LIDERPEEVT+++RSV G+V++STFDE
Sbjct: 203 LIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIKVAELVLERAMRLVEHKKDVIIL 262
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ + +LARAYN VIP SG+ L+GG+D A RPKRFFGAAR
Sbjct: 263 MDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAAR 304
>sp|C7LJY3|RHO_SULMS Transcription termination factor Rho OS=Sulcia muelleri (strain
SMDSEM) GN=rho PE=3 SV=1
Length = 379
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/336 (58%), Positives = 261/336 (77%), Gaps = 5/336 (1%)
Query: 17 LPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVP--KNGERYFALLK 74
+ D +GFLRS +NY++SS D+Y+S SQIR F + TGD + GE+R P K GE+YF L +
Sbjct: 1 MTDKYGFLRSSYTNYLSSSKDVYVSQSQIRLFRIKTGDTIRGEVRTPNPKKGEKYFPLKR 60
Query: 75 IKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGL 134
I ++NG P R F LTPL P + + + K ++ RI+D +P+GKGQRG+
Sbjct: 61 IFQINGRFPTSVIKRKSFKKLTPLFPNEKFQISKR---KVTLSTRIVDFFSPLGKGQRGI 117
Query: 135 LVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEP 194
+VA PK+GK+ +L+ IA+ I NH E +I++LIDERPEEVT+MQR+V GEV+ STFDEP
Sbjct: 118 IVAPPKTGKTTLLKEIANTIAYNHPEVYLIILLIDERPEEVTDMQRNVNGEVVYSTFDEP 177
Query: 195 AYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQ 254
A +HV+VA +VL+KAKR+VE DV+ILLDSITRLARAYNTV P SGK+L+GGVDSNALQ
Sbjct: 178 AEKHVKVANIVLQKAKRMVECGHDVVILLDSITRLARAYNTVSPTSGKILSGGVDSNALQ 237
Query: 255 RPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVY 314
+PKRFFGAARNIE GGSL+IIATA+IETGS+MD+VI+EEFKGTGNME+ L+R++A KR++
Sbjct: 238 KPKRFFGAARNIEYGGSLSIIATAIIETGSKMDEVIFEEFKGTGNMELQLDRKIANKRIF 297
Query: 315 PAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
PAI+LN S TR+EE L+ L K++++RKLL +T
Sbjct: 298 PAIDLNASSTRKEEFLLTKYNLNKMFLIRKLLAEMT 333
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 132/247 (53%), Gaps = 82/247 (33%)
Query: 426 LPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVP--KNGERYFALLK 483
+ D +GFLRS +NY++SS D+Y+S SQIR F + TG +GE+R P K GE+YF L +
Sbjct: 1 MTDKYGFLRSSYTNYLSSSKDVYVSQSQIRLFRIKTGDTIRGEVRTPNPKKGEKYFPLKR 60
Query: 484 IKKVN-----------------------------------------------------VA 490
I ++N VA
Sbjct: 61 IFQINGRFPTSVIKRKSFKKLTPLFPNEKFQISKRKVTLSTRIVDFFSPLGKGQRGIIVA 120
Query: 491 SPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-- 548
PK+GK+ +L+ IA+ I NH E +I++LIDERPEEVT+MQR+V GEV+ STFDEPA
Sbjct: 121 PPKTGKTTLLKEIANTIAYNHPEVYLIILLIDERPEEVTDMQRNVNGEVVYSTFDEPAEK 180
Query: 549 -------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPK 583
L + +LARAYNTV P SGK+L+GGVDSNALQ+PK
Sbjct: 181 HVKVANIVLQKAKRMVECGHDVVILLDSITRLARAYNTVSPTSGKILSGGVDSNALQKPK 240
Query: 584 RFFGAAR 590
RFFGAAR
Sbjct: 241 RFFGAAR 247
>sp|P38527|RHO_THEMA Transcription termination factor Rho OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rho PE=1
SV=2
Length = 427
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/342 (59%), Positives = 267/342 (78%), Gaps = 3/342 (0%)
Query: 9 FGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGER 68
FG+G LE+ P+GFGFLR N + S+DDIY+SPSQIR+FNL+TGD + G IR PK GE+
Sbjct: 57 FGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEK 116
Query: 69 YFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIG 128
YFA++KI+ +N E +R FDNLTP +P++ +LE + + + R+IDL APIG
Sbjct: 117 YFAMIKIEAINYRPVEAVNDRVNFDNLTPDYPRERFILETD---PKIYSTRLIDLFAPIG 173
Query: 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIA 188
KGQRG++VA PK+GK+ IL+ IA+ I NH + I I++LIDERPEEVT+++ S VIA
Sbjct: 174 KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIA 233
Query: 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGV 248
+ FD P + V+VAE+ LE AKRLVE DV+ILLDS+TRLAR YN V+P SGK+LTGGV
Sbjct: 234 APFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTGGV 293
Query: 249 DSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRL 308
D AL +PKRFFGAARN EGGSLTIIATAL+ETGS+MD+VI+EEFKGTGNME+ L R+L
Sbjct: 294 DPAALYKPKRFFGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQL 353
Query: 309 AEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
A KR++PAINL SGTRREELL+ ++ L+K+W+LR++L ++T
Sbjct: 354 ANKRIFPAINLLLSGTRREELLLDEETLKKVWLLRRMLSAMT 395
Score = 196 bits (497), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 146/274 (53%), Gaps = 80/274 (29%)
Query: 397 LRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR 456
+RK++L+FAI K +T+ FG+G LE+ P+GFGFLR N + S+DDIY+SPSQIR+
Sbjct: 36 MRKRDLIFAILKAQTESTGYFFGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRK 95
Query: 457 FNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------- 488
FNL+TG + G IR PK GE+YFA++KI+ +N
Sbjct: 96 FNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDNLTPDYPRERFILE 155
Query: 489 -------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 523
VA PK+GK+ IL+ IA+ I NH + I I++LIDE
Sbjct: 156 TDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215
Query: 524 RPEEVTEMQRSVRGEVIASTFDEPA---------------------------LSVMCKLA 556
RPEEVT+++ S VIA+ FD P L + +LA
Sbjct: 216 RPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLA 275
Query: 557 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
R YN V+P SGK+LTGGVD AL +PKRFFGAAR
Sbjct: 276 RVYNIVVPPSGKLLTGGVDPAALYKPKRFFGAAR 309
>sp|Q7UGV0|RHO_RHOBA Transcription termination factor Rho OS=Rhodopirellula baltica
(strain SH1) GN=rho PE=3 SV=1
Length = 514
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/343 (55%), Positives = 270/343 (78%), Gaps = 7/343 (2%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
++G+G+LE+LPDGFGFLRS +Y++ DDIY+SPSQIRRF LHTG V G+IR PK E
Sbjct: 142 MYGEGTLEILPDGFGFLRSAQYHYLSCPDDIYVSPSQIRRFGLHTGSHVAGQIRPPKENE 201
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
RYFALL+I+ +N P + + FD+LTPLHP+ ++ E + + ++ R++DL PI
Sbjct: 202 RYFALLRIEAINHADPMQRQRQKPFDDLTPLHPRTRIVTEHD---SQELSTRVVDLFTPI 258
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG--- 184
G GQRGL+V+ P++GK++++Q +A + N+ +A ++V+LIDERPEEVT+M+R ++
Sbjct: 259 GFGQRGLIVSPPRAGKTMLMQSLARGVLNNYPDAYVVVLLIDERPEEVTDMEREIQSPQC 318
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNT-VIPASGKV 243
EVI+STFDEP RH+QVA+MV+EKAKR+VE DV+I LDSITRLARA+N+ A+GK+
Sbjct: 319 EVISSTFDEPPARHIQVAQMVVEKAKRMVESGTDVVIFLDSITRLARAFNSDSDSATGKL 378
Query: 244 LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVH 303
LTGG+D+ A+Q+PK FG+AR +EEGGSLTI+ATAL++TGSRMDDVI+EEFKGTGN+E+
Sbjct: 379 LTGGLDAGAMQKPKSIFGSARKVEEGGSLTILATALVDTGSRMDDVIFEEFKGTGNLEIV 438
Query: 304 LERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
L++ L +RV+PAI+L +SGTRREE+L+ ++ ++I LR+ L
Sbjct: 439 LDQDLVARRVWPAIDLTRSGTRREEMLLDQEEHRRIETLRRDL 481
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 159/297 (53%), Gaps = 88/297 (29%)
Query: 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGS 438
L LAET+ + + L +QEL+F + K + ++G+G+LE+LPDGFGFLRS
Sbjct: 108 LALAETEGL----QEIAALPRQELVFRLLKARMSANGLMYGEGTLEILPDGFGFLRSAQY 163
Query: 439 NYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------- 488
+Y++ DDIY+SPSQIRRF LHTG G+IR PK ERYFALL+I+ +N
Sbjct: 164 HYLSCPDDIYVSPSQIRRFGLHTGSHVAGQIRPPKENERYFALLRIEAINHADPMQRQRQ 223
Query: 489 -------------------------------------------VASPKSGKSIILQHIAH 505
V+ P++GK++++Q +A
Sbjct: 224 KPFDDLTPLHPRTRIVTEHDSQELSTRVVDLFTPIGFGQRGLIVSPPRAGKTMLMQSLAR 283
Query: 506 AITTNHSEAIMIVMLIDERPEEVTEMQRSVRG---EVIASTFDEPA-------------- 548
+ N+ +A ++V+LIDERPEEVT+M+R ++ EVI+STFDEP
Sbjct: 284 GVLNNYPDAYVVVLLIDERPEEVTDMEREIQSPQCEVISSTFDEPPARHIQVAQMVVEKA 343
Query: 549 -------------LSVMCKLARAYNT-VIPASGKVLTGGVDSNALQRPKRFFGAARK 591
L + +LARA+N+ A+GK+LTGG+D+ A+Q+PK FG+ARK
Sbjct: 344 KRMVESGTDVVIFLDSITRLARAFNSDSDSATGKLLTGGLDAGAMQKPKSIFGSARK 400
>sp|P52157|RHO_STRLI Transcription termination factor Rho OS=Streptomyces lividans
GN=rho PE=1 SV=1
Length = 707
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/341 (56%), Positives = 266/341 (78%), Gaps = 9/341 (2%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGER--- 68
G L++L D + F+R+ G Y+ +D+Y+S +Q+R+ L GD + G +R PK GER
Sbjct: 336 GILDIL-DNYAFIRTSG--YLPGPNDVYVSLAQVRKNGLRKGDHLTGAVRQPKEGERREK 392
Query: 69 YFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIG 128
+ AL+++ VNG PE + R F+ LTPL+P+ L LE + +T RIIDL+APIG
Sbjct: 393 FNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGV---LTTRIIDLVAPIG 449
Query: 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIA 188
KGQRGL+VA PK+GK++I+Q IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GEVI+
Sbjct: 450 KGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVIS 509
Query: 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGV 248
STFD PA H VAE+ +E+AKRLVE+ DV++LLDSITRL RAYN PASG++L+GGV
Sbjct: 510 STFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGV 569
Query: 249 DSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRL 308
DS AL PKRFFGAARNIE+GGSLTI+ATAL++TGSRMD+VI+EEFKGTGN E+ L+R+L
Sbjct: 570 DSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNAELKLDRKL 629
Query: 309 AEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
A+KR++PA++++ SGTR+EE+L+ D+L W LR++L++L
Sbjct: 630 ADKRIFPAVDVDASGTRKEEILLGSDELAITWKLRRVLHAL 670
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 128/253 (50%), Gaps = 86/253 (33%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGER--- 477
G L++L D + F+R+ G Y+ +D+Y+S +Q+R+ L G G +R PK GER
Sbjct: 336 GILDIL-DNYAFIRTSG--YLPGPNDVYVSLAQVRKNGLRKGDHLTGAVRQPKEGERREK 392
Query: 478 YFALLKIKKVN------------------------------------------------- 488
+ AL+++ VN
Sbjct: 393 FNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVAPIGKGQ 452
Query: 489 ----VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 544
VA PK+GK++I+Q IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GEVI+STF
Sbjct: 453 RGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTF 512
Query: 545 DEPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
D PA L + +L RAYN PASG++L+GGVDS
Sbjct: 513 DRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDST 572
Query: 578 ALQRPKRFFGAAR 590
AL PKRFFGAAR
Sbjct: 573 ALYPPKRFFGAAR 585
>sp|C9RLJ9|RHO_FIBSS Transcription termination factor Rho OS=Fibrobacter succinogenes
(strain ATCC 19169 / S85) GN=rho PE=3 SV=1
Length = 689
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/408 (49%), Positives = 272/408 (66%), Gaps = 35/408 (8%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I+ +G LEV P G GFLR NY S+DD+Y+S + IR+FNL GD +EG +R P+
Sbjct: 285 GNIIYTEGVLEVTPQGHGFLRMPDQNYQTSADDVYVSQNLIRKFNLKIGDTIEGLVRTPR 344
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
+ ++YF++ +I +VN E+P+ + R F+ LTP+HP++ + LE N + + RI+DL
Sbjct: 345 DQDKYFSMRRIDRVNFEEPDKMRRRVAFEYLTPIHPEEKIHLEWN---ETEYSTRIMDLF 401
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR---- 180
+PIGKGQR +++A P++GK+++LQ++ AI NH E I+I +LIDERPEEVTEM+
Sbjct: 402 SPIGKGQRSIILAPPRTGKTVLLQNVTRAIAKNHPEIILITLLIDERPEEVTEMRDIITD 461
Query: 181 ----------SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230
++ EV+ASTFDEP H +VA MVLEKAKRLVE +KDV+ILLDSITR A
Sbjct: 462 IKEKAAEKGIEIKAEVVASTFDEPPEHHTRVANMVLEKAKRLVESQKDVVILLDSITRFA 521
Query: 231 RAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEE------------------GGSL 272
RA N VIP SGK+L+GGVD+NA+Q PK+FFGAAR I++ GSL
Sbjct: 522 RANNVVIPHSGKILSGGVDANAMQFPKKFFGAARKIQDKIRTVKNEDGTISEEVQKNGSL 581
Query: 273 TIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQ 332
TII TALIETGSRMD+VI+EEFKGTGNME+ L+RR+AEKR++PAI++ KSGTR+EE L+
Sbjct: 582 TIIGTALIETGSRMDEVIFEEFKGTGNMELVLDRRIAEKRIWPAIDVFKSGTRKEERLLT 641
Query: 333 DDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLV 380
+ W R+ + T T +L + + LL P V
Sbjct: 642 LLEQNAAWNFRRGSQNETETGIMENLLKLMSKLKTNAELLAVLSKPKV 689
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 143/291 (49%), Gaps = 95/291 (32%)
Query: 395 KRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQI 454
+R+RKQ L + I + G I+ +G LEV P G GFLR NY S+DD+Y+S + I
Sbjct: 267 RRMRKQSLNY-ILQSLENEGNIIYTEGVLEVTPQGHGFLRMPDQNYQTSADDVYVSQNLI 325
Query: 455 RRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN-------------------------- 488
R+FNL G +G +R P++ ++YF++ +I +VN
Sbjct: 326 RKFNLKIGDTIEGLVRTPRDQDKYFSMRRIDRVNFEEPDKMRRRVAFEYLTPIHPEEKIH 385
Query: 489 ---------------------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 521
+A P++GK+++LQ++ AI NH E I+I +LI
Sbjct: 386 LEWNETEYSTRIMDLFSPIGKGQRSIILAPPRTGKTVLLQNVTRAIAKNHPEIILITLLI 445
Query: 522 DERPEEVTEMQR--------------SVRGEVIASTFDEPA------------------- 548
DERPEEVTEM+ ++ EV+ASTFDEP
Sbjct: 446 DERPEEVTEMRDIITDIKEKAAEKGIEIKAEVVASTFDEPPEHHTRVANMVLEKAKRLVE 505
Query: 549 --------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARK 591
L + + ARA N VIP SGK+L+GGVD+NA+Q PK+FFGAARK
Sbjct: 506 SQKDVVILLDSITRFARANNVVIPHSGKILSGGVDANAMQFPKKFFGAARK 556
>sp|P66028|RHO_MYCTU Transcription termination factor Rho OS=Mycobacterium tuberculosis
GN=rho PE=3 SV=1
Length = 602
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/344 (55%), Positives = 253/344 (73%), Gaps = 12/344 (3%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE---- 67
G L+VL D + F+R+ G Y+ D+Y+S + +R+ + GD V G +RVPK GE
Sbjct: 228 GILDVL-DNYAFVRTSG--YLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQ 284
Query: 68 --RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
++ L+++ +NG E +K R F LTPL+P + L LE S E +T R+IDLI
Sbjct: 285 RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLE---TSTERLTTRVIDLIM 341
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
PIGKGQR L+V+ PK+GK+ ILQ IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GE
Sbjct: 342 PIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGE 401
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VIASTFD P H VAE+ +E+AKRLVE KDV++LLDSITRL RAYN PASG++L+
Sbjct: 402 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 461
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVDS AL PKRF GAARNIEEGGSLTIIATA++ETGS D VI+EEFKGTGN E+ L+
Sbjct: 462 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD 521
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R++AE+RV+PA+++N SGTR++ELL+ D+ + LR++L L
Sbjct: 522 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGL 565
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 123/256 (48%), Gaps = 89/256 (34%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGE---- 476
G L+VL D + F+R+ G Y+ D+Y+S + +R+ + G G +RVPK GE
Sbjct: 228 GILDVL-DNYAFVRTSG--YLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQ 284
Query: 477 --RYFALLKIKKVN---------------------------------------------- 488
++ L+++ +N
Sbjct: 285 RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIG 344
Query: 489 -------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIA 541
V+ PK+GK+ ILQ IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GEVIA
Sbjct: 345 KGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIA 404
Query: 542 STFDEPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGV 574
STFD P L + +L RAYN PASG++L+GGV
Sbjct: 405 STFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGV 464
Query: 575 DSNALQRPKRFFGAAR 590
DS AL PKRF GAAR
Sbjct: 465 DSTALYPPKRFLGAAR 480
>sp|P66029|RHO_MYCBO Transcription termination factor Rho OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=rho PE=3 SV=1
Length = 602
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/344 (55%), Positives = 253/344 (73%), Gaps = 12/344 (3%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE---- 67
G L+VL D + F+R+ G Y+ D+Y+S + +R+ + GD V G +RVPK GE
Sbjct: 228 GILDVL-DNYAFVRTSG--YLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQ 284
Query: 68 --RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
++ L+++ +NG E +K R F LTPL+P + L LE S E +T R+IDLI
Sbjct: 285 RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLE---TSTERLTTRVIDLIM 341
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
PIGKGQR L+V+ PK+GK+ ILQ IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GE
Sbjct: 342 PIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGE 401
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VIASTFD P H VAE+ +E+AKRLVE KDV++LLDSITRL RAYN PASG++L+
Sbjct: 402 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 461
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVDS AL PKRF GAARNIEEGGSLTIIATA++ETGS D VI+EEFKGTGN E+ L+
Sbjct: 462 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD 521
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R++AE+RV+PA+++N SGTR++ELL+ D+ + LR++L L
Sbjct: 522 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGL 565
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 123/256 (48%), Gaps = 89/256 (34%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGE---- 476
G L+VL D + F+R+ G Y+ D+Y+S + +R+ + G G +RVPK GE
Sbjct: 228 GILDVL-DNYAFVRTSG--YLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQ 284
Query: 477 --RYFALLKIKKVN---------------------------------------------- 488
++ L+++ +N
Sbjct: 285 RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIG 344
Query: 489 -------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIA 541
V+ PK+GK+ ILQ IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GEVIA
Sbjct: 345 KGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIA 404
Query: 542 STFDEPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGV 574
STFD P L + +L RAYN PASG++L+GGV
Sbjct: 405 STFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGV 464
Query: 575 DSNALQRPKRFFGAAR 590
DS AL PKRF GAAR
Sbjct: 465 DSTALYPPKRFLGAAR 480
>sp|P45835|RHO_MYCLE Transcription termination factor Rho OS=Mycobacterium leprae
(strain TN) GN=rho PE=3 SV=1
Length = 610
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/344 (55%), Positives = 254/344 (73%), Gaps = 12/344 (3%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE---- 67
G L+VL D + F+R+ G Y+A D+Y+S S +R+ L GD V G +RVP+ GE
Sbjct: 236 GILDVL-DNYAFVRTSG--YLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQ 292
Query: 68 --RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125
++ L+++ +NG E +K R F LTPL+P + L LE + + +T R+IDLI
Sbjct: 293 RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLE---TTPDRLTTRVIDLIM 349
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
PIGKGQR L+V+ PK+GK+ ILQ IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GE
Sbjct: 350 PIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGE 409
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VIASTFD P H VAE+ +E+AKRLVE KDV++LLDSITRL RAYN PASG++L+
Sbjct: 410 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 469
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVDS AL PKRF GAARNIEEGGSLTIIATA++ETGS D VI+EEFKGTGN E+ L+
Sbjct: 470 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLD 529
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R++AE+RV+PA+++N SGTR++ELL+ D+ + LR++L L
Sbjct: 530 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGL 573
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 124/256 (48%), Gaps = 89/256 (34%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGE---- 476
G L+VL D + F+R+ G Y+A D+Y+S S +R+ L G G +RVP+ GE
Sbjct: 236 GILDVL-DNYAFVRTSG--YLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQ 292
Query: 477 --RYFALLKIKKVN---------------------------------------------- 488
++ L+++ +N
Sbjct: 293 RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIG 352
Query: 489 -------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIA 541
V+ PK+GK+ ILQ IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GEVIA
Sbjct: 353 KGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIA 412
Query: 542 STFDEPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGV 574
STFD P L + +L RAYN PASG++L+GGV
Sbjct: 413 STFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGV 472
Query: 575 DSNALQRPKRFFGAAR 590
DS AL PKRF GAAR
Sbjct: 473 DSTALYPPKRFLGAAR 488
>sp|P52154|RHO_MICLU Transcription termination factor Rho OS=Micrococcus luteus GN=rho
PE=1 SV=3
Length = 691
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 261/350 (74%), Gaps = 19/350 (5%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGER--- 68
G L+VL D + F+R+ G Y+ +D+Y+S + ++++ L GD V G I P++GE+
Sbjct: 312 GILDVL-DNYAFVRTSG--YLPGPNDVYVSLAMVKKYGLRKGDAVVGPI-APRDGEKQQH 367
Query: 69 ---------YFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGR 119
+ AL+KI VNG+ R F L PL+P++ L LE + + I R
Sbjct: 368 HGGGSNRQKFNALVKISSVNGQPAVEHPQRVEFGKLVPLYPQERLRLETD---PKLIGPR 424
Query: 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179
+IDL++PIGKGQRGL+V+ PK+GK++ILQ IA+AI TN+ E ++++L+DERPEEVT+MQ
Sbjct: 425 VIDLVSPIGKGQRGLIVSPPKAGKTMILQSIANAIKTNNPEVHLMMVLVDERPEEVTDMQ 484
Query: 180 RSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPA 239
RSV GEVIASTFD PA H +AE+ +E+AKRLVEM +DV++LLDS+TRL RAYN PA
Sbjct: 485 RSVDGEVIASTFDRPADDHTTLAELAIERAKRLVEMGRDVVVLLDSMTRLGRAYNLAAPA 544
Query: 240 SGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGN 299
SG++L+GGVDS+AL PK+FFGAARNIE GGSLTI+ATAL+ETGSRMD+VI+EEFKGTGN
Sbjct: 545 SGRILSGGVDSSALYPPKKFFGAARNIENGGSLTILATALVETGSRMDEVIFEEFKGTGN 604
Query: 300 MEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
ME+ L R LAE+R++PA+++N SGTRREE L+ ++++ +W LR++L L
Sbjct: 605 MELRLSRHLAERRIFPAVDVNASGTRREEALLSQEEVKIMWKLRRVLSGL 654
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 128/262 (48%), Gaps = 96/262 (36%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGER--- 477
G L+VL D + F+R+ G Y+ +D+Y+S + ++++ L G G I P++GE+
Sbjct: 312 GILDVL-DNYAFVRTSG--YLPGPNDVYVSLAMVKKYGLRKGDAVVGPI-APRDGEKQQH 367
Query: 478 ---------YFALLKIKKVN---------------------------------------- 488
+ AL+KI VN
Sbjct: 368 HGGGSNRQKFNALVKISSVNGQPAVEHPQRVEFGKLVPLYPQERLRLETDPKLIGPRVID 427
Query: 489 -------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 535
V+ PK+GK++ILQ IA+AI TN+ E ++++L+DERPEEVT+MQRSV
Sbjct: 428 LVSPIGKGQRGLIVSPPKAGKTMILQSIANAIKTNNPEVHLMMVLVDERPEEVTDMQRSV 487
Query: 536 RGEVIASTFDEPA---------------------------LSVMCKLARAYNTVIPASGK 568
GEVIASTFD PA L M +L RAYN PASG+
Sbjct: 488 DGEVIASTFDRPADDHTTLAELAIERAKRLVEMGRDVVVLLDSMTRLGRAYNLAAPASGR 547
Query: 569 VLTGGVDSNALQRPKRFFGAAR 590
+L+GGVDS+AL PK+FFGAAR
Sbjct: 548 ILSGGVDSSALYPPKKFFGAAR 569
>sp|P52153|RHO_DEIRA Transcription termination factor Rho OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=rho PE=3
SV=2
Length = 426
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/339 (53%), Positives = 257/339 (75%), Gaps = 4/339 (1%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G L++ DG+GFL Q +S + ++ I++++L TGD V G R P+ ERY +
Sbjct: 63 GYLDITSDGYGFL--QADLLDPASRSVLVTAGVIKQYHLRTGDEVIGRARKPRENERYGS 120
Query: 72 LLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQ 131
L++++ VNG PE ++ R FD+LTP P + L+LE + + + ++ R++DL+ PIG+GQ
Sbjct: 121 LVRVEAVNGLDPEAARQRPRFDDLTPTFPDQQLVLE-DPSTDDGLSLRVVDLLVPIGRGQ 179
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG-EVIAST 190
R L+VA PK+GK+ +L+ IA++IT N+ + ++V+L+DERPEEVT+ + SV+G +VIAST
Sbjct: 180 RALIVAPPKAGKTTLLKKIANSITKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVIAST 239
Query: 191 FDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDS 250
FDEP HV+VAE V E+A+R+VE V+ILLDSITRLARA N V P +G+ L+GG+DS
Sbjct: 240 FDEPPQHHVRVAEFVHERARRIVEEGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDS 299
Query: 251 NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAE 310
NAL PKRF GAARNI EGGSLTI+ATAL+ETGSRMDDVI+EEFKGTGN E+ L RRL E
Sbjct: 300 NALHWPKRFLGAARNIREGGSLTILATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEE 359
Query: 311 KRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+R++PA+++ KSGTRREELL+Q + L+K+W+LRK++ +
Sbjct: 360 RRIFPALDILKSGTRREELLLQPEVLKKMWLLRKVISDM 398
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 81/130 (62%), Gaps = 28/130 (21%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG-EVIASTFDEP 547
VA PK+GK+ +L+ IA++IT N+ + ++V+L+DERPEEVT+ + SV+G +VIASTFDEP
Sbjct: 184 VAPPKAGKTTLLKKIANSITKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVIASTFDEP 243
Query: 548 A---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQ 580
L + +LARA N V P +G+ L+GG+DSNAL
Sbjct: 244 PQHHVRVAEFVHERARRIVEEGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNALH 303
Query: 581 RPKRFFGAAR 590
PKRF GAAR
Sbjct: 304 WPKRFLGAAR 313
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + + ++L+K L AI +K+ + G L++ DG+GFL Q +S +
Sbjct: 31 LGIENYRKLKKDALALAIMEKQADAEGQSLARGYLDITSDGYGFL--QADLLDPASRSVL 88
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
++ I++++L TG G R P+ ERY +L++++ VN P++ +
Sbjct: 89 VTAGVIKQYHLRTGDEVIGRARKPRENERYGSLVRVEAVNGLDPEAAR 136
>sp|D2B129|RHO_STRRD Transcription termination factor Rho OS=Streptosporangium roseum
(strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)
GN=rho PE=3 SV=1
Length = 383
Score = 350 bits (897), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 173/331 (52%), Positives = 235/331 (70%), Gaps = 14/331 (4%)
Query: 19 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKV 78
D G++R+ G Y+ DD+ + +QIR++ L GD V R P Y L +++ V
Sbjct: 37 DKTGYIRTHG--YLPGVDDVRVPHAQIRQYGLRPGDHVVATTRKP-----YERLAEVESV 89
Query: 79 NGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVAS 138
NG +NR F ++TP+HP++ L LE E++T R+IDL APIGKGQRGL+VA
Sbjct: 90 NGSTD--WRNRPDFADMTPIHPRERLRLE-----TESVTSRVIDLFAPIGKGQRGLIVAP 142
Query: 139 PKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRH 198
PK+GK+++LQ +A AIT NH + ++V+L+ ERPEEVTEM+ S+ GEV ASTFD P H
Sbjct: 143 PKAGKTMVLQDLAAAITRNHPDCHLMVVLVGERPEEVTEMRESIHGEVAASTFDRPDRDH 202
Query: 199 VQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQRPKR 258
+AE+ +E+AKRL E DV++LLDS+TRL RAYN + P G+ L GG+D+ AL P+R
Sbjct: 203 TALAELAVERAKRLAESGHDVVVLLDSLTRLGRAYNNLAPGGGRTLAGGLDAAALLPPRR 262
Query: 259 FFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAIN 318
FFGAARN+ +GGSLTI+ATAL+ETGSRMDD ++EEFKGTGNME+ L R LA+KR+YPA++
Sbjct: 263 FFGAARNLRDGGSLTILATALVETGSRMDDNLFEEFKGTGNMELRLSRALADKRLYPAVD 322
Query: 319 LNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
L+ SGTRREE+L+ + Q W LR+ L L
Sbjct: 323 LDASGTRREEILLDPQEHQLTWRLRRTLGGL 353
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 106/239 (44%), Gaps = 83/239 (34%)
Query: 428 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKV 487
D G++R+ G Y+ DD+ + +QIR++ L G R P Y L +++ V
Sbjct: 37 DKTGYIRTHG--YLPGVDDVRVPHAQIRQYGLRPGDHVVATTRKP-----YERLAEVESV 89
Query: 488 N-------------------------------------------------VASPKSGKSI 498
N VA PK+GK++
Sbjct: 90 NGSTDWRNRPDFADMTPIHPRERLRLETESVTSRVIDLFAPIGKGQRGLIVAPPKAGKTM 149
Query: 499 ILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA---------- 548
+LQ +A AIT NH + ++V+L+ ERPEEVTEM+ S+ GEV ASTFD P
Sbjct: 150 VLQDLAAAITRNHPDCHLMVVLVGERPEEVTEMRESIHGEVAASTFDRPDRDHTALAELA 209
Query: 549 -----------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYN + P G+ L GG+D+ AL P+RFFGAAR
Sbjct: 210 VERAKRLAESGHDVVVLLDSLTRLGRAYNNLAPGGGRTLAGGLDAAALLPPRRFFGAAR 268
>sp|Q8RG42|RHO_FUSNN Transcription termination factor Rho OS=Fusobacterium nucleatum
subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM
8532 / LMG 13131) GN=rho PE=3 SV=1
Length = 413
Score = 341 bits (874), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 247/338 (73%), Gaps = 13/338 (3%)
Query: 12 GSLEVLPDGFGFLR--SQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERY 69
G+L+ P+GFGFL+ + G N IY+S SQI+RF L GD V GE+R P E+
Sbjct: 50 GTLDTAPEGFGFLKETTLGKN-------IYMSASQIKRFKLRRGDQVLGEVRKPIGEEKN 102
Query: 70 FALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGK 129
+A+ ++ K N ++R ++ L P +P + +L IE + NI+GRI+DLI+PIGK
Sbjct: 103 YAIRRVLKANDNDLAALESRVPYEELIPTYPTEQFVL--GIE-QGNISGRILDLISPIGK 159
Query: 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-VIA 188
GQR L++A PK+GK+ + IA+A+ ++ + ++LIDERPEEVT+++ +V G V A
Sbjct: 160 GQRALIIAPPKAGKTTFISSIANALIEGQKDSEVWILLIDERPEEVTDIKENVEGATVFA 219
Query: 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGV 248
STFD+ H++V E ++EKAK VE ++V+ILLDS+TRLARAYN V+P+SGK+L+GG+
Sbjct: 220 STFDDDPKNHIKVTEEIIEKAKMKVEDGENVVILLDSLTRLARAYNIVMPSSGKLLSGGI 279
Query: 249 DSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRL 308
D AL PK FFGAARNI++GGSLTIIAT L++TGS+MD+VIYEEFK TGN +++L+R+L
Sbjct: 280 DPTALYHPKNFFGAARNIKDGGSLTIIATILVDTGSKMDEVIYEEFKSTGNCDIYLDRQL 339
Query: 309 AEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
AE R++PAI++ KSGTR+EELL+ +++ IW LR+LL
Sbjct: 340 AEFRIFPAIDITKSGTRKEELLLNKNQIDDIWNLRRLL 377
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 116/253 (45%), Gaps = 90/253 (35%)
Query: 421 GSLEVLPDGFGFLR--SQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERY 478
G+L+ P+GFGFL+ + G N IY+S SQI+RF L G GE+R P E+
Sbjct: 50 GTLDTAPEGFGFLKETTLGKN-------IYMSASQIKRFKLRRGDQVLGEVRKPIGEEKN 102
Query: 479 FALLKIKKVN-------------------------------------------------- 488
+A+ ++ K N
Sbjct: 103 YAIRRVLKANDNDLAALESRVPYEELIPTYPTEQFVLGIEQGNISGRILDLISPIGKGQR 162
Query: 489 ---VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-VIASTF 544
+A PK+GK+ + IA+A+ ++ + ++LIDERPEEVT+++ +V G V ASTF
Sbjct: 163 ALIIAPPKAGKTTFISSIANALIEGQKDSEVWILLIDERPEEVTDIKENVEGATVFASTF 222
Query: 545 DEPA---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSN 577
D+ L + +LARAYN V+P+SGK+L+GG+D
Sbjct: 223 DDDPKNHIKVTEEIIEKAKMKVEDGENVVILLDSLTRLARAYNIVMPSSGKLLSGGIDPT 282
Query: 578 ALQRPKRFFGAAR 590
AL PK FFGAAR
Sbjct: 283 ALYHPKNFFGAAR 295
>sp|D1AWS1|RHO_STRM9 Transcription termination factor Rho OS=Streptobacillus
moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651
/ 9901) GN=rho PE=3 SV=1
Length = 416
Score = 337 bits (864), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 171/324 (52%), Positives = 238/324 (73%), Gaps = 11/324 (3%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I+ G L+++ + +GFLR+ N D+Y+S SQI++F L GD + GE+R P N E
Sbjct: 52 IYSYGELDIINETYGFLRNTPQNI-----DVYVSNSQIKKFGLRQGDVIVGEVRKPLNDE 106
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127
+ F LLK+ VNGEK ELS+ R +FD+LTP +P +ER + ++ RIIDLIAPI
Sbjct: 107 KNFGLLKLIYVNGEKGELSRQRPIFDDLTPSYP-----IERLELGEGTVSSRIIDLIAPI 161
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-GEV 186
GKGQRGL+VA PK+GK+ IL +A+ I + + + ++LIDERPEEVT+++ +V+ E+
Sbjct: 162 GKGQRGLIVAPPKAGKTTILSDLANDILKYNKDVQVWIILIDERPEEVTDIKENVKNAEI 221
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
A+TFDE H+ V E VLE AKR +E +++IL+DS+TRLAR+YN +P+SGK+L+G
Sbjct: 222 FAATFDENTSVHLSVTEKVLEAAKREIEKGNNIVILMDSLTRLARSYNIEMPSSGKLLSG 281
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
G+D +L PK+F GAAR I GGSLTI+ATALIETGSRMD+VI+EEFKGTGNME+ L+R
Sbjct: 282 GIDPKSLYMPKKFLGAARKIRGGGSLTILATALIETGSRMDEVIFEEFKGTGNMELVLDR 341
Query: 307 RLAEKRVYPAINLNKSGTRREELL 330
L + R++PA+++ KSGTR+EELL
Sbjct: 342 ALQQLRLFPAVDILKSGTRKEELL 365
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 122/254 (48%), Gaps = 84/254 (33%)
Query: 417 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGE 476
I+ G L+++ + +GFLR+ N D+Y+S SQI++F L G + GE+R P N E
Sbjct: 52 IYSYGELDIINETYGFLRNTPQNI-----DVYVSNSQIKKFGLRQGDVIVGEVRKPLNDE 106
Query: 477 RYFALLKIKKVN------------------------------------------------ 488
+ F LLK+ VN
Sbjct: 107 KNFGLLKLIYVNGEKGELSRQRPIFDDLTPSYPIERLELGEGTVSSRIIDLIAPIGKGQR 166
Query: 489 ---VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-GEVIASTF 544
VA PK+GK+ IL +A+ I + + + ++LIDERPEEVT+++ +V+ E+ A+TF
Sbjct: 167 GLIVAPPKAGKTTILSDLANDILKYNKDVQVWIILIDERPEEVTDIKENVKNAEIFAATF 226
Query: 545 DEPA---LSV------------------------MCKLARAYNTVIPASGKVLTGGVDSN 577
DE LSV + +LAR+YN +P+SGK+L+GG+D
Sbjct: 227 DENTSVHLSVTEKVLEAAKREIEKGNNIVILMDSLTRLARSYNIEMPSSGKLLSGGIDPK 286
Query: 578 ALQRPKRFFGAARK 591
+L PK+F GAARK
Sbjct: 287 SLYMPKKFLGAARK 300
>sp|Q9FC33|RHO_STRCO Transcription termination factor Rho OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=rho PE=3 SV=1
Length = 415
Score = 335 bits (860), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 181/362 (50%), Positives = 238/362 (65%), Gaps = 12/362 (3%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G L++ G G LR G N D LSP+ IRR L GD VEG G+R
Sbjct: 57 GVLDIETGGKGRLR--GRNLQPEPADPALSPALIRRHGLRRGDLVEGVC-----GDRR-T 108
Query: 72 LLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQ 131
L + +VNG P+ ++R F +LTPLHP + L LE + GR++DL+AP+GKGQ
Sbjct: 109 LTDVVRVNGRTPD-RRSRPHFADLTPLHPHERLRLE---HPAAGLAGRVVDLLAPVGKGQ 164
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
RGL+VA PK+GK+++LQ A A+ NH EA ++V+L+DERPEEVT+M+RSVRGEV +STF
Sbjct: 165 RGLIVAPPKTGKTVLLQQFAAAVAGNHPEARLMVVLLDERPEEVTDMRRSVRGEVYSSTF 224
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
D A +H+ +AE+V+E+AKRLVE +DV+ILLDS+TRL RA+N + G+ L+GGVD+
Sbjct: 225 DRSARQHIALAELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAASSGGRTLSGGVDAG 284
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
AL PKRFFGAAR EEGGSLTI+ATAL+ETGSR DD +EE K TGNME+ L R A +
Sbjct: 285 ALLGPKRFFGAARKAEEGGSLTILATALVETGSRADDFYFEELKSTGNMELRLSREPASR 344
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNL 371
RV+PA+ SGTRREELL+ + + LR+ L + S +L R P
Sbjct: 345 RVFPAVEPVGSGTRREELLLSGAETTALRGLRRALVARDGQSGLETLLERLRRTPDNATF 404
Query: 372 LK 373
L+
Sbjct: 405 LR 406
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 111/244 (45%), Gaps = 75/244 (30%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEI----------- 469
G L++ G G LR G N D LSP+ IRR L G L +G
Sbjct: 57 GVLDIETGGKGRLR--GRNLQPEPADPALSPALIRRHGLRRGDLVEGVCGDRRTLTDVVR 114
Query: 470 ---RVPKNGER-YFALLKI-------------------------------KKVNVASPKS 494
R P R +FA L + + VA PK+
Sbjct: 115 VNGRTPDRRSRPHFADLTPLHPHERLRLEHPAAGLAGRVVDLLAPVGKGQRGLIVAPPKT 174
Query: 495 GKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA------ 548
GK+++LQ A A+ NH EA ++V+L+DERPEEVT+M+RSVRGEV +STFD A
Sbjct: 175 GKTVLLQQFAAAVAGNHPEARLMVVLLDERPEEVTDMRRSVRGEVYSSTFDRSARQHIAL 234
Query: 549 ---------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFG 587
L + +L RA+N + G+ L+GGVD+ AL PKRFFG
Sbjct: 235 AELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAASSGGRTLSGGVDAGALLGPKRFFG 294
Query: 588 AARK 591
AARK
Sbjct: 295 AARK 298
>sp|B2UR37|RHO_AKKM8 Transcription termination factor Rho OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=rho PE=3 SV=1
Length = 474
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 238/342 (69%), Gaps = 3/342 (0%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G + G +E D + LR ++ S DDIYL + I+ +L G ++ +R +
Sbjct: 105 GHEVVVSGVMEQAKDNYAMLRDPVKSFRTSPDDIYLGGNLIKPLHLRVGQQIKVRLRKLR 164
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLI 124
++Y + + V E + R+ F+ LTPL PK+ LLLE + + R++DL+
Sbjct: 165 PHDKYLSAASVISVEDIPAEDYRARSDFERLTPLFPKERLLLEN--KGVNSAAMRVLDLM 222
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
P GKGQRGL+VA P+ GK+++L+ IA +I N+ E +IV+L+DERPEEVT+ + +V
Sbjct: 223 TPFGKGQRGLIVAPPRGGKTVLLKTIARSIRANYPEVELIVLLLDERPEEVTDFEETVDA 282
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
V ASTFDEP+ RH QV+++V+E+AKRLVEM +DV+ILLDS+TRLAR YN G+++
Sbjct: 283 PVFASTFDEPSRRHAQVSDLVIERAKRLVEMGRDVVILLDSLTRLARGYNAN-QTGGRIM 341
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
+GG+ SNAL++P++FF AARN+EEGGSLTIIAT L++T SRMD+VI+EEFKGTGN+E+ L
Sbjct: 342 SGGLGSNALEKPRKFFSAARNVEEGGSLTIIATCLVDTESRMDEVIFEEFKGTGNLEIRL 401
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+R L+E+R+YPAI+L++SGTR ++ L + + KI LR+ L
Sbjct: 402 DRELSERRIYPAISLSQSGTRNDDRLYNEQEFVKIMQLRRQL 443
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 82/283 (28%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + + L K +L+F + K+ G + G +E D + LR ++ S DDIY
Sbjct: 80 LPIRNAASLTKSQLVFELGKQLLAKGHEVVVSGVMEQAKDNYAMLRDPVKSFRTSPDDIY 139
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFA---------------------------- 480
L + I+ +L G K +R + ++Y +
Sbjct: 140 LGGNLIKPLHLRVGQQIKVRLRKLRPHDKYLSAASVISVEDIPAEDYRARSDFERLTPLF 199
Query: 481 -----LLKIKKVN---------------------VASPKSGKSIILQHIAHAITTNHSEA 514
LL+ K VN VA P+ GK+++L+ IA +I N+ E
Sbjct: 200 PKERLLLENKGVNSAAMRVLDLMTPFGKGQRGLIVAPPRGGKTVLLKTIARSIRANYPEV 259
Query: 515 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA-------------------------- 548
+IV+L+DERPEEVT+ + +V V ASTFDEP+
Sbjct: 260 ELIVLLLDERPEEVTDFEETVDAPVFASTFDEPSRRHAQVSDLVIERAKRLVEMGRDVVI 319
Query: 549 -LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LAR YN G++++GG+ SNAL++P++FF AAR
Sbjct: 320 LLDSLTRLARGYNAN-QTGGRIMSGGLGSNALEKPRKFFSAAR 361
>sp|C1A5H8|RHO_GEMAT Transcription termination factor Rho OS=Gemmatimonas aurantiaca
(strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505)
GN=rho PE=3 SV=1
Length = 737
Score = 322 bits (825), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 238/336 (70%), Gaps = 8/336 (2%)
Query: 19 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKV 78
DG GFLR ++Y+ D ++ P+ +R L GD +E + ++ + +++++ +
Sbjct: 379 DG-GFLRRPENSYLPDPTDPFMPPALVRLHQLRRGDRLE--VTYGRDHRGRYLVIEVQTL 435
Query: 79 NGEKPELSKNRTLFDNLTPLHPKKLLLLE--RNIESKENITGRIIDLIAPIGKGQRGLLV 136
N P + + R F+ L +P + L LE R ++ +T R IDLIAPIG GQR L+V
Sbjct: 436 NDGSPVVLEKRPDFNTLVASYPDRKLTLETGRPAKTGPELTRRAIDLIAPIGYGQRALIV 495
Query: 137 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAY 196
A ++GK+ +LQ I ++ NH EA+++V+L+DERPEEV+EM GEV+AS+FD P
Sbjct: 496 APARAGKTTLLQAIVEGVSINHPEAVLLVLLVDERPEEVSEMITWGYGEVVASSFDMPPK 555
Query: 197 RHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQRP 256
RHV+VAEM LE+A+RLVE KDV+I+LDSITRLARA+NTV +G+ ++GG+D+ A+Q+P
Sbjct: 556 RHVEVAEMTLERARRLVEQGKDVVIVLDSITRLARAHNTVDRGTGRTMSGGLDATAMQKP 615
Query: 257 KRFFGAARNIEE---GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRV 313
K FFG+AR I GGSLTIIATAL+ETGSRMDDVI+EEFKGTGN E+ L+R LA++R+
Sbjct: 616 KAFFGSARMIAPQHGGGSLTIIATALVETGSRMDDVIFEEFKGTGNCEIKLDRSLADRRI 675
Query: 314 YPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+PA ++ SGTRREE L + D+L+K+ +LR+ L+ L
Sbjct: 676 FPAFDIATSGTRREEKLYRPDQLEKVHLLRRGLHQL 711
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 27/129 (20%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA ++GK+ +LQ I ++ NH EA+++V+L+DERPEEV+EM GEV+AS+FD P
Sbjct: 495 VAPARAGKTTLLQAIVEGVSINHPEAVLLVLLVDERPEEVSEMITWGYGEVVASSFDMPP 554
Query: 549 ---------------------------LSVMCKLARAYNTVIPASGKVLTGGVDSNALQR 581
L + +LARA+NTV +G+ ++GG+D+ A+Q+
Sbjct: 555 KRHVEVAEMTLERARRLVEQGKDVVIVLDSITRLARAHNTVDRGTGRTMSGGLDATAMQK 614
Query: 582 PKRFFGAAR 590
PK FFG+AR
Sbjct: 615 PKAFFGSAR 623
>sp|P74857|SSAN_SALTY Probable secretion system apparatus ATP synthase SsaN OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=ssaN PE=3 SV=1
Length = 433
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 122/245 (49%), Gaps = 25/245 (10%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
+TG R ID +A G+GQR + ++P GKS +L + +A + + +++LI ER E
Sbjct: 140 MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN----VLVLIGERGRE 195
Query: 175 VTEM-------QRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSIT 227
V E + R ++ +T D PA V+ + A+ + K V++L DS+T
Sbjct: 196 VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT 255
Query: 228 RLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGA-ARNIE-----EGGSLTIIATALIE 281
R ARA + A+G+ G + P F A R +E E GS+T T L+E
Sbjct: 256 RYARAAREIALAAGETAVSG------EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE 309
Query: 282 TGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWV 341
G M++ + +E + + + L RRLAE+ YPAI++ + +R ++ + Q +
Sbjct: 310 -GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI 368
Query: 342 LRKLL 346
LR+ L
Sbjct: 369 LRRCL 373
>sp|P55717|Y4YI_RHISN Probable ATP synthase y4yI OS=Rhizobium sp. (strain NGR234)
GN=NGR_a00640 PE=3 SV=1
Length = 451
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 123/293 (41%), Gaps = 29/293 (9%)
Query: 82 KPELSKNRTLFDNLTPLHPKKL-LLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPK 140
+P K + PLH + + R +E + R +D + G+GQR + P
Sbjct: 125 RPLDGKGEVKTTEVRPLHGRAPNPMTRRMVERPFPLGVRALDGLLTCGEGQRIGIYGEPG 184
Query: 141 SGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDE 193
GKS ++ I + ++IV LI ER EV E GE V+ T D
Sbjct: 185 GGKSTLISQIVKGAAAD----VVIVALIGERGREVREFVERHLGEEGLRRAIVVVETSDR 240
Query: 194 PAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNAL 253
A Q A M A+ E V +LLDS+TR RA + A+G+ T
Sbjct: 241 SATERAQCAPMATALAEYFREQGLRVALLLDSLTRFCRAMREIGLAAGEPPT-------- 292
Query: 254 QR--PKRFFGAA------RNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
+R P F A + E GS+T T L+E G D I EE +G + + L
Sbjct: 293 RRGFPPSVFAALPGLLERAGLGERGSITAFYTVLVE-GDGTGDPIAEESRGILDGHIVLS 351
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSL 358
R LA + +PAI++ +S +R + ++ + + R LL F +++
Sbjct: 352 RALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYAECEFLINV 404
>sp|Q9I4N1|FLII_PSEAE Flagellum-specific ATP synthase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=fliI
PE=3 SV=1
Length = 451
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 17/264 (6%)
Query: 93 DNLTPLHPKKLLLLERN-IESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIA 151
++ P+ + L+R+ I ++ R I+ + +G+GQR L A GKS++L
Sbjct: 130 EDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLL---- 185
Query: 152 HAITTNHSEA-IMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAE 203
+ T + A I++V LI ER EV E + GE V+AS D+ ++ A+
Sbjct: 186 -GMMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQ 244
Query: 204 MVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGA 262
A+ + K+V++L+DS+TR A+A + A G+ T G + + +
Sbjct: 245 YCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVER 304
Query: 263 ARNIEEGG-SLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNK 321
A N E GG S+T T L E G D I + +G + L RRLAE+ YPAI++
Sbjct: 305 AGNAEAGGGSITAFYTVLSE-GDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEA 363
Query: 322 SGTRREELLIQDDKLQKIWVLRKL 345
S +R +++ + L+ ++L
Sbjct: 364 SISRVMPQVVEAEHLRDAQRFKQL 387
>sp|O83417|FLII_TREPA Flagellum-specific ATP synthase OS=Treponema pallidum (strain
Nichols) GN=fliI PE=3 SV=1
Length = 447
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 126/253 (49%), Gaps = 21/253 (8%)
Query: 106 LERNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMI 164
+ER +++ +TG R++D + +G GQR + + GKS ++ IA N + +
Sbjct: 135 MERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIAR----NTDADVSV 190
Query: 165 VMLIDERPEEVTE----------MQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVE 214
+ LI ER EV + ++RSV ++++T DE V+ A A+ +
Sbjct: 191 IALIGERGREVMDFVAHDLGPEGLKRSV---IVSATSDESPLARVRGAYTATAIAEYFRD 247
Query: 215 MKKDVIILLDSITRLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARNIEEGGSLT 273
K V++L DS+TR A+A + ASG++ T G + + A + GS+T
Sbjct: 248 QGKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSM-GSVT 306
Query: 274 IIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQD 333
T L++ G +D+ I + +G + + L R LA++ YPAI++ +S +R ++
Sbjct: 307 AFYTVLVD-GDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGA 365
Query: 334 DKLQKIWVLRKLL 346
D + + ++R+ L
Sbjct: 366 DMKEAVRIVRRAL 378
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,083,102
Number of Sequences: 539616
Number of extensions: 9095805
Number of successful extensions: 28539
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 1968
Number of HSP's that attempted gapping in prelim test: 26721
Number of HSP's gapped (non-prelim): 2393
length of query: 592
length of database: 191,569,459
effective HSP length: 123
effective length of query: 469
effective length of database: 125,196,691
effective search space: 58717248079
effective search space used: 58717248079
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)