Query psy3765
Match_columns 592
No_of_seqs 442 out of 2941
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 16:41:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09376 rho transcription ter 100.0 3.6E-99 8E-104 799.2 34.2 371 3-375 44-414 (416)
2 COG1158 Rho Transcription term 100.0 1.2E-99 3E-104 776.7 27.5 374 1-375 45-418 (422)
3 PRK12678 transcription termina 100.0 7.9E-96 2E-100 796.2 34.1 367 3-375 289-661 (672)
4 PRK12608 transcription termina 100.0 6.9E-93 1.5E-97 749.6 30.0 367 3-375 12-378 (380)
5 TIGR00767 rho transcription te 100.0 5.4E-92 1.2E-96 747.3 29.8 371 2-375 43-413 (415)
6 COG1157 FliI Flagellar biosynt 100.0 1.6E-85 3.4E-90 691.9 28.0 347 19-388 69-424 (441)
7 TIGR03305 alt_F1F0_F1_bet alte 100.0 9E-82 1.9E-86 679.7 31.4 345 37-402 61-415 (449)
8 TIGR01039 atpD ATP synthase, F 100.0 1.4E-81 3E-86 678.1 27.3 331 38-387 67-407 (461)
9 PRK12597 F0F1 ATP synthase sub 100.0 3.6E-81 7.9E-86 678.1 29.9 331 38-387 67-407 (461)
10 PRK09280 F0F1 ATP synthase sub 100.0 5.9E-81 1.3E-85 674.9 31.2 331 38-387 68-408 (463)
11 CHL00060 atpB ATP synthase CF1 100.0 1.1E-80 2.4E-85 675.0 29.4 331 38-387 85-432 (494)
12 TIGR01043 ATP_syn_A_arch ATP s 100.0 7.3E-81 1.6E-85 684.9 27.6 312 89-412 187-527 (578)
13 TIGR01041 ATP_syn_B_arch ATP s 100.0 1.5E-79 3.4E-84 665.4 31.6 351 21-388 48-416 (458)
14 TIGR01042 V-ATPase_V1_A V-type 100.0 4.4E-80 9.5E-85 676.4 25.8 312 89-412 191-532 (591)
15 PRK04196 V-type ATP synthase s 100.0 3.4E-79 7.3E-84 664.0 32.5 335 37-388 66-418 (460)
16 TIGR03324 alt_F1F0_F1_al alter 100.0 4.5E-79 9.8E-84 663.6 32.4 339 38-403 86-436 (497)
17 PRK04192 V-type ATP synthase s 100.0 3.8E-80 8.2E-85 680.2 23.4 302 101-412 202-530 (586)
18 PRK09281 F0F1 ATP synthase sub 100.0 1E-78 2.3E-83 665.2 31.8 340 37-403 85-436 (502)
19 COG1158 Rho Transcription term 100.0 3.1E-80 6.8E-85 633.7 18.2 222 369-592 6-309 (422)
20 TIGR01040 V-ATPase_V1_B V-type 100.0 1.6E-78 3.4E-83 652.8 30.9 353 37-408 64-444 (466)
21 PRK13343 F0F1 ATP synthase sub 100.0 2.5E-78 5.3E-83 659.9 32.0 339 38-403 86-436 (502)
22 PRK07165 F0F1 ATP synthase sub 100.0 4.7E-78 1E-82 655.4 31.3 328 37-388 61-402 (507)
23 PRK06936 type III secretion sy 100.0 1.5E-78 3.4E-83 653.1 27.0 339 38-403 86-433 (439)
24 PRK08927 fliI flagellum-specif 100.0 2.2E-78 4.9E-83 652.3 28.1 340 37-402 80-430 (442)
25 PRK08972 fliI flagellum-specif 100.0 2.4E-78 5.2E-83 650.5 27.6 348 19-388 68-425 (444)
26 TIGR00962 atpA proton transloc 100.0 8.5E-78 1.8E-82 657.9 31.8 339 39-404 86-436 (501)
27 CHL00059 atpA ATP synthase CF1 100.0 1E-77 2.2E-82 650.7 31.3 328 39-388 66-405 (485)
28 PTZ00185 ATPase alpha subunit; 100.0 8.2E-75 1.8E-79 627.0 32.2 328 37-386 105-456 (574)
29 PRK05688 fliI flagellum-specif 100.0 9.9E-75 2.2E-79 625.3 31.2 329 39-388 93-431 (451)
30 TIGR03496 FliI_clade1 flagella 100.0 8.1E-75 1.8E-79 622.9 27.9 348 19-388 43-400 (411)
31 PRK09099 type III secretion sy 100.0 1.9E-74 4.2E-79 623.2 30.9 340 39-405 88-436 (441)
32 TIGR03498 FliI_clade3 flagella 100.0 1.2E-74 2.5E-79 622.1 28.9 348 19-388 45-403 (418)
33 TIGR03497 FliI_clade2 flagella 100.0 1.1E-74 2.4E-79 622.2 27.5 330 37-388 60-398 (413)
34 PRK06820 type III secretion sy 100.0 4E-74 8.7E-79 620.1 31.7 327 39-388 89-424 (440)
35 cd01133 F1-ATPase_beta F1 ATP 100.0 7.5E-75 1.6E-79 592.5 22.4 263 48-328 2-273 (274)
36 PRK07960 fliI flagellum-specif 100.0 2.6E-74 5.6E-79 620.8 27.6 324 44-388 104-438 (455)
37 cd01135 V_A-ATPase_B V/A-type 100.0 1.3E-74 2.8E-79 590.1 22.2 263 48-326 2-276 (276)
38 PRK08149 ATP synthase SpaL; Va 100.0 1.5E-73 3.2E-78 613.9 30.4 347 19-388 53-412 (428)
39 cd01136 ATPase_flagellum-secre 100.0 3.3E-74 7.1E-79 601.4 24.4 315 48-383 2-325 (326)
40 PRK08472 fliI flagellum-specif 100.0 4.9E-74 1.1E-78 618.5 26.1 330 38-388 81-418 (434)
41 PRK02118 V-type ATP synthase s 100.0 3.3E-74 7.1E-79 618.0 24.3 316 37-384 64-392 (436)
42 PRK07594 type III secretion sy 100.0 9E-74 2E-78 616.3 26.1 328 38-388 80-416 (433)
43 cd01132 F1_ATPase_alpha F1 ATP 100.0 1.2E-73 2.7E-78 582.8 21.6 261 48-327 2-274 (274)
44 PRK06002 fliI flagellum-specif 100.0 8.4E-72 1.8E-76 601.9 31.1 324 45-388 94-427 (450)
45 PRK05922 type III secretion sy 100.0 8.6E-72 1.9E-76 600.6 30.7 324 39-386 82-414 (434)
46 PRK07196 fliI flagellum-specif 100.0 2E-71 4.3E-76 598.3 24.9 331 37-388 78-417 (434)
47 TIGR02546 III_secr_ATP type II 100.0 1.8E-70 3.8E-75 591.9 29.7 340 39-405 68-418 (422)
48 TIGR01026 fliI_yscN ATPase Fli 100.0 1.1E-70 2.3E-75 595.5 25.8 329 38-388 86-424 (440)
49 PRK06793 fliI flagellum-specif 100.0 4.6E-69 1E-73 579.7 29.9 329 38-388 80-417 (432)
50 PRK07721 fliI flagellum-specif 100.0 3.4E-67 7.3E-72 568.0 25.5 328 39-388 83-419 (438)
51 COG0056 AtpA F0F1-type ATP syn 100.0 4.8E-67 1E-71 552.7 25.4 358 18-404 68-437 (504)
52 PRK06315 type III secretion sy 100.0 2.1E-65 4.5E-70 552.7 29.2 328 40-388 87-426 (442)
53 cd01134 V_A-ATPase_A V/A-type 100.0 3.3E-66 7.2E-71 541.3 21.0 228 88-326 121-369 (369)
54 COG0055 AtpD F0F1-type ATP syn 100.0 1.7E-65 3.6E-70 531.6 18.0 330 39-387 70-411 (468)
55 PRK14698 V-type ATP synthase s 100.0 5.5E-64 1.2E-68 583.4 23.5 248 163-412 685-961 (1017)
56 PF00006 ATP-synt_ab: ATP synt 100.0 1.2E-62 2.5E-67 488.6 14.5 204 116-324 1-215 (215)
57 COG1156 NtpB Archaeal/vacuolar 100.0 4.6E-62 9.9E-67 509.9 17.5 354 13-384 46-417 (463)
58 COG1155 NtpA Archaeal/vacuolar 100.0 9E-60 2E-64 504.3 16.9 314 88-413 188-530 (588)
59 KOG1352|consensus 100.0 6.8E-60 1.5E-64 490.0 11.9 389 9-409 93-548 (618)
60 PRK09376 rho transcription ter 100.0 6.6E-59 1.4E-63 492.7 17.5 221 370-592 4-305 (416)
61 KOG1351|consensus 100.0 2.2E-58 4.7E-63 465.8 20.3 320 37-373 86-431 (489)
62 cd01128 rho_factor Transcripti 100.0 2.7E-56 5.9E-61 452.0 22.0 245 116-360 2-246 (249)
63 KOG1350|consensus 100.0 2.9E-57 6.3E-62 461.4 10.9 323 44-384 120-458 (521)
64 TIGR00767 rho transcription te 100.0 1.2E-55 2.6E-60 469.5 14.3 222 369-592 3-304 (415)
65 PRK12678 transcription termina 100.0 2.2E-54 4.8E-59 471.9 15.1 178 412-592 289-552 (672)
66 PRK12608 transcription termina 100.0 6.5E-47 1.4E-51 400.3 13.1 177 413-592 13-269 (380)
67 COG1157 FliI Flagellar biosynt 99.9 7.5E-26 1.6E-30 240.1 7.4 117 455-576 94-287 (441)
68 KOG1353|consensus 99.9 1.5E-25 3.2E-30 223.8 7.4 260 18-404 61-335 (340)
69 PF07497 Rho_RNA_bind: Rho ter 99.9 3.7E-25 8E-30 186.8 5.3 76 417-492 1-76 (78)
70 PF07497 Rho_RNA_bind: Rho ter 99.9 1.3E-23 2.9E-28 177.3 7.5 78 8-85 1-78 (78)
71 cd04459 Rho_CSD Rho_CSD: Rho p 99.9 1.6E-22 3.4E-27 166.9 6.2 68 419-486 1-68 (68)
72 cd01133 F1-ATPase_beta F1 ATP 99.8 5.1E-20 1.1E-24 189.2 8.6 83 489-572 75-192 (274)
73 cd04459 Rho_CSD Rho_CSD: Rho p 99.8 6.4E-20 1.4E-24 151.5 7.1 67 10-76 1-67 (68)
74 cd01128 rho_factor Transcripti 99.8 1.1E-19 2.3E-24 185.0 7.5 108 485-592 18-152 (249)
75 PRK12597 F0F1 ATP synthase sub 99.8 8.5E-20 1.8E-24 199.4 6.5 119 455-574 74-269 (461)
76 PRK09280 F0F1 ATP synthase sub 99.8 2.2E-19 4.7E-24 195.9 7.7 87 484-571 132-266 (463)
77 TIGR01039 atpD ATP synthase, F 99.8 5E-19 1.1E-23 192.6 7.6 97 484-586 131-275 (461)
78 cd01136 ATPase_flagellum-secre 99.7 1.2E-18 2.5E-23 183.4 6.3 100 489-592 75-209 (326)
79 PRK06936 type III secretion sy 99.7 2.8E-18 6.1E-23 186.3 7.6 88 489-587 168-290 (439)
80 PRK08972 fliI flagellum-specif 99.7 4E-18 8.6E-23 184.9 7.5 76 489-569 168-278 (444)
81 cd01132 F1_ATPase_alpha F1 ATP 99.7 5.7E-18 1.2E-22 174.0 6.8 80 489-571 75-189 (274)
82 CHL00060 atpB ATP synthase CF1 99.7 1.1E-17 2.5E-22 183.2 7.8 87 484-571 149-290 (494)
83 PRK08927 fliI flagellum-specif 99.7 1.9E-17 4.1E-22 180.0 8.6 81 484-569 146-274 (442)
84 TIGR03305 alt_F1F0_F1_bet alte 99.7 1.8E-17 3.9E-22 180.4 7.5 116 455-571 69-260 (449)
85 PF00006 ATP-synt_ab: ATP synt 99.7 5.9E-18 1.3E-22 168.9 3.3 105 484-592 16-155 (215)
86 TIGR01041 ATP_syn_B_arch ATP s 99.7 3.8E-17 8.3E-22 178.7 6.9 86 484-569 129-264 (458)
87 TIGR03497 FliI_clade2 flagella 99.7 5.7E-17 1.2E-21 175.7 6.4 99 489-591 143-276 (413)
88 PRK04196 V-type ATP synthase s 99.7 6.8E-17 1.5E-21 177.0 7.1 115 456-570 75-267 (460)
89 cd01135 V_A-ATPase_B V/A-type 99.7 1.5E-16 3.1E-21 163.7 7.5 87 484-570 57-193 (276)
90 TIGR03496 FliI_clade1 flagella 99.6 1.4E-16 3.1E-21 172.5 6.6 98 489-591 143-276 (411)
91 TIGR03324 alt_F1F0_F1_al alter 99.6 4.2E-16 9.1E-21 171.3 7.3 82 484-570 150-281 (497)
92 TIGR01026 fliI_yscN ATPase Fli 99.6 3.4E-16 7.3E-21 170.9 6.0 98 489-591 169-302 (440)
93 TIGR01040 V-ATPase_V1_B V-type 99.6 5.1E-16 1.1E-20 168.9 6.9 114 455-569 72-273 (466)
94 PRK07960 fliI flagellum-specif 99.6 5E-16 1.1E-20 169.1 6.3 94 484-587 163-304 (455)
95 TIGR03498 FliI_clade3 flagella 99.6 5.6E-16 1.2E-20 168.1 6.3 77 489-569 146-256 (418)
96 PRK05922 type III secretion sy 99.6 5.6E-16 1.2E-20 168.4 5.8 97 489-590 163-295 (434)
97 TIGR00962 atpA proton transloc 99.6 8.2E-16 1.8E-20 169.9 6.4 76 489-569 167-279 (501)
98 PRK09099 type III secretion sy 99.6 1.2E-15 2.6E-20 166.4 7.0 77 489-569 169-279 (441)
99 PRK13343 F0F1 ATP synthase sub 99.6 1E-15 2.2E-20 168.7 6.2 78 489-569 168-280 (502)
100 PRK05688 fliI flagellum-specif 99.6 1.1E-15 2.4E-20 166.6 6.4 96 489-589 174-305 (451)
101 CHL00059 atpA ATP synthase CF1 99.6 1.7E-15 3.6E-20 166.0 7.2 77 489-570 147-260 (485)
102 PRK06820 type III secretion sy 99.6 1.7E-15 3.6E-20 165.0 6.8 75 489-568 169-278 (440)
103 PRK08472 fliI flagellum-specif 99.6 1.4E-15 3.1E-20 165.3 5.0 98 489-591 163-295 (434)
104 PRK09281 F0F1 ATP synthase sub 99.6 2.1E-15 4.5E-20 166.8 6.3 78 489-569 168-280 (502)
105 PRK08149 ATP synthase SpaL; Va 99.5 7.1E-15 1.5E-19 159.7 7.8 81 489-574 157-273 (428)
106 PRK07594 type III secretion sy 99.5 6.4E-15 1.4E-19 160.3 7.2 93 489-590 161-287 (433)
107 PRK02118 V-type ATP synthase s 99.5 6.7E-15 1.4E-19 159.8 6.7 82 484-570 128-258 (436)
108 TIGR01042 V-ATPase_V1_A V-type 99.5 1.2E-14 2.6E-19 161.4 6.6 75 489-568 232-350 (591)
109 PRK07721 fliI flagellum-specif 99.5 5.5E-15 1.2E-19 161.3 3.7 95 489-587 164-293 (438)
110 cd01134 V_A-ATPase_A V/A-type 99.5 1.5E-14 3.2E-19 153.1 6.6 77 489-570 163-281 (369)
111 TIGR01043 ATP_syn_A_arch ATP s 99.5 1.7E-14 3.6E-19 160.7 6.8 75 489-568 228-344 (578)
112 PRK06793 fliI flagellum-specif 99.5 1.5E-14 3.3E-19 157.3 5.9 99 489-591 162-294 (432)
113 PRK06002 fliI flagellum-specif 99.5 2.9E-14 6.3E-19 155.5 6.5 78 489-570 171-281 (450)
114 PRK07165 F0F1 ATP synthase sub 99.5 6.5E-14 1.4E-18 154.1 6.7 77 489-569 149-259 (507)
115 PRK07196 fliI flagellum-specif 99.4 5.1E-14 1.1E-18 153.3 5.1 98 489-590 161-293 (434)
116 TIGR02546 III_secr_ATP type II 99.4 2.1E-13 4.5E-18 148.5 6.7 79 489-571 151-263 (422)
117 PRK04192 V-type ATP synthase s 99.4 3.9E-13 8.4E-18 150.1 7.0 75 489-568 233-349 (586)
118 PTZ00185 ATPase alpha subunit; 99.4 5.9E-13 1.3E-17 146.4 8.0 81 489-569 195-315 (574)
119 PRK06315 type III secretion sy 99.2 1.7E-11 3.6E-16 134.1 8.5 93 489-590 170-297 (442)
120 cd01120 RecA-like_NTPases RecA 98.8 1E-07 2.2E-12 87.2 14.7 153 133-306 2-165 (165)
121 PRK14698 V-type ATP synthase s 98.6 3.2E-08 6.9E-13 117.7 5.5 69 497-570 670-780 (1017)
122 PF06745 KaiC: KaiC; InterPro 98.2 5.5E-06 1.2E-10 82.3 8.7 112 115-229 2-127 (226)
123 COG2256 MGS1 ATPase related to 98.1 3.5E-06 7.6E-11 90.8 4.7 80 128-238 46-125 (436)
124 COG0467 RAD55 RecA-superfamily 98.1 3.4E-05 7.3E-10 78.7 11.6 176 113-313 4-200 (260)
125 COG0055 AtpD F0F1-type ATP syn 98.0 4.2E-06 9.1E-11 89.4 5.1 87 484-571 135-269 (468)
126 smart00382 AAA ATPases associa 98.0 4.5E-06 9.8E-11 72.7 3.0 97 129-236 1-97 (148)
127 cd01394 radB RadB. The archaea 97.9 6.2E-05 1.3E-09 74.3 10.3 111 114-233 1-119 (218)
128 PRK06067 flagellar accessory p 97.9 9.9E-05 2.2E-09 73.9 10.6 68 113-182 6-75 (234)
129 PRK09302 circadian clock prote 97.8 0.00021 4.5E-09 80.0 13.6 168 113-309 254-437 (509)
130 PF05496 RuvB_N: Holliday junc 97.8 3E-05 6.4E-10 78.6 5.6 69 132-237 52-121 (233)
131 cd01393 recA_like RecA is a b 97.8 0.00019 4.1E-09 70.9 11.1 113 114-232 1-129 (226)
132 cd01123 Rad51_DMC1_radA Rad51_ 97.8 0.00021 4.4E-09 71.1 11.1 113 114-231 1-129 (235)
133 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00031 6.8E-09 70.9 10.9 67 114-182 3-71 (237)
134 cd00983 recA RecA is a bacter 97.6 0.00015 3.2E-09 77.2 8.2 106 113-231 35-147 (325)
135 TIGR02012 tigrfam_recA protein 97.6 0.00019 4.2E-09 76.3 8.8 106 113-231 35-147 (321)
136 COG3854 SpoIIIAA ncharacterize 97.6 3.6E-05 7.9E-10 78.1 3.1 71 454-526 110-181 (308)
137 PRK04328 hypothetical protein; 97.6 0.00026 5.7E-09 72.2 9.4 67 114-182 5-73 (249)
138 TIGR02236 recomb_radA DNA repa 97.6 0.00036 7.7E-09 73.1 10.6 115 113-232 76-207 (310)
139 PRK09302 circadian clock prote 97.6 0.00047 1E-08 77.2 12.1 69 113-182 12-82 (509)
140 TIGR03878 thermo_KaiC_2 KaiC d 97.6 0.00041 8.9E-09 71.3 10.5 58 114-173 4-77 (259)
141 PRK09354 recA recombinase A; P 97.5 0.0003 6.4E-09 75.6 8.7 106 113-231 40-152 (349)
142 TIGR02655 circ_KaiC circadian 97.4 0.0007 1.5E-08 75.6 10.9 181 113-322 244-440 (484)
143 TIGR02238 recomb_DMC1 meiotic 97.4 0.0009 1.9E-08 70.9 11.1 114 113-232 77-206 (313)
144 PRK04301 radA DNA repair and r 97.4 0.00087 1.9E-08 70.7 10.6 114 113-232 83-213 (317)
145 PF07498 Rho_N: Rho terminatio 97.4 0.00012 2.7E-09 55.5 3.0 43 371-415 1-43 (43)
146 TIGR02237 recomb_radB DNA repa 97.4 0.0016 3.4E-08 63.8 11.5 97 128-232 10-112 (209)
147 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.00098 2.1E-08 66.3 10.1 63 114-178 2-66 (229)
148 TIGR00416 sms DNA repair prote 97.4 0.0015 3.2E-08 72.7 12.2 62 113-176 75-138 (454)
149 PRK08533 flagellar accessory p 97.4 0.0023 4.9E-08 64.7 12.6 67 114-182 6-74 (230)
150 PRK11823 DNA repair protein Ra 97.3 0.0026 5.6E-08 70.6 13.7 104 113-231 61-170 (446)
151 PRK09361 radB DNA repair and r 97.3 0.0018 3.9E-08 64.3 11.1 111 113-232 4-122 (225)
152 cd01121 Sms Sms (bacterial rad 97.3 0.0042 9E-08 67.5 14.2 63 113-177 63-127 (372)
153 KOG2028|consensus 97.2 0.00066 1.4E-08 72.9 7.2 79 132-239 164-244 (554)
154 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0028 6.2E-08 62.9 11.2 64 117-182 1-66 (224)
155 cd01122 GP4d_helicase GP4d_hel 97.2 0.0037 8E-08 63.7 12.2 66 113-179 12-78 (271)
156 cd01124 KaiC KaiC is a circadi 97.2 0.0028 6.2E-08 60.3 10.4 48 133-182 2-49 (187)
157 PLN03187 meiotic recombination 97.2 0.0025 5.4E-08 68.5 11.0 115 113-232 107-236 (344)
158 PRK09519 recA DNA recombinatio 97.2 0.0019 4E-08 75.9 10.4 105 113-230 40-151 (790)
159 PF00306 ATP-synt_ab_C: ATP sy 97.1 0.00054 1.2E-08 61.8 4.4 61 337-403 2-63 (113)
160 COG2255 RuvB Holliday junction 97.1 0.0007 1.5E-08 70.7 5.6 144 132-334 54-204 (332)
161 cd00009 AAA The AAA+ (ATPases 97.1 0.0022 4.8E-08 56.5 8.1 79 129-229 18-96 (151)
162 TIGR02655 circ_KaiC circadian 97.1 0.0031 6.8E-08 70.5 11.0 68 114-182 3-72 (484)
163 PF05729 NACHT: NACHT domain 97.0 0.0015 3.3E-08 60.1 6.3 88 132-231 2-95 (166)
164 PLN03186 DNA repair protein RA 97.0 0.0064 1.4E-07 65.3 11.6 114 113-232 104-233 (342)
165 PTZ00035 Rad51 protein; Provis 97.0 0.0043 9.4E-08 66.4 10.3 114 113-232 99-228 (337)
166 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0068 1.5E-07 64.3 10.6 113 113-231 77-205 (316)
167 KOG1350|consensus 96.8 0.00075 1.6E-08 71.2 2.6 126 443-571 122-319 (521)
168 PRK00411 cdc6 cell division co 96.8 0.0032 7E-08 67.5 7.4 96 128-230 53-151 (394)
169 PF00004 AAA: ATPase family as 96.7 0.0024 5.2E-08 56.7 5.4 74 133-233 1-74 (132)
170 PF13173 AAA_14: AAA domain 96.7 0.0039 8.5E-08 56.8 6.8 77 130-236 2-80 (128)
171 PRK05973 replicative DNA helic 96.7 0.012 2.7E-07 60.1 10.6 92 126-230 60-160 (237)
172 PF13481 AAA_25: AAA domain; P 96.7 0.011 2.4E-07 56.7 9.8 67 116-182 16-92 (193)
173 smart00357 CSP Cold shock prot 96.6 0.0036 7.8E-08 49.4 5.1 48 420-472 1-50 (64)
174 cd03115 SRP The signal recogni 96.6 0.019 4.2E-07 54.6 11.0 87 133-228 3-93 (173)
175 PF08206 OB_RNB: Ribonuclease 96.6 0.0013 2.8E-08 52.9 2.4 44 421-471 1-44 (58)
176 PF13401 AAA_22: AAA domain; P 96.6 0.0016 3.4E-08 58.3 3.0 93 130-230 4-100 (131)
177 TIGR02928 orc1/cdc6 family rep 96.5 0.0066 1.4E-07 64.4 7.8 97 128-230 38-142 (365)
178 PRK13342 recombination factor 96.5 0.0034 7.4E-08 68.6 5.5 77 129-236 35-111 (413)
179 PTZ00361 26 proteosome regulat 96.5 0.0072 1.6E-07 67.0 7.7 47 5-57 102-149 (438)
180 TIGR02881 spore_V_K stage V sp 96.3 0.0085 1.9E-07 61.3 6.7 31 126-156 38-68 (261)
181 TIGR00635 ruvB Holliday juncti 96.3 0.0076 1.6E-07 62.5 6.4 26 130-155 30-55 (305)
182 PF00154 RecA: recA bacterial 96.3 0.012 2.5E-07 62.9 7.9 105 113-230 33-144 (322)
183 PRK14974 cell division protein 96.3 0.025 5.4E-07 60.7 10.4 93 128-229 138-234 (336)
184 COG0468 RecA RecA/RadA recombi 96.3 0.017 3.6E-07 60.6 8.7 111 113-233 41-157 (279)
185 PRK08118 topology modulation p 96.2 0.0044 9.6E-08 59.6 4.0 35 131-165 2-36 (167)
186 COG1474 CDC6 Cdc6-related prot 96.2 0.0078 1.7E-07 65.2 6.3 100 124-232 33-138 (366)
187 PRK08084 DNA replication initi 96.2 0.0053 1.2E-07 62.1 4.7 39 129-169 44-82 (235)
188 PF00308 Bac_DnaA: Bacterial d 96.1 0.017 3.8E-07 57.9 7.9 41 130-170 34-74 (219)
189 PRK10416 signal recognition pa 96.1 0.047 1E-06 58.1 11.4 41 128-170 112-152 (318)
190 PRK00149 dnaA chromosomal repl 96.0 0.012 2.6E-07 65.1 6.7 40 131-170 149-188 (450)
191 PLN00020 ribulose bisphosphate 96.0 0.011 2.4E-07 64.2 6.1 72 133-228 151-223 (413)
192 PF08423 Rad51: Rad51; InterP 96.0 0.043 9.4E-07 56.5 10.2 115 113-233 19-149 (256)
193 cd01125 repA Hexameric Replica 95.9 0.038 8.2E-07 55.7 9.2 49 130-178 1-59 (239)
194 PF01583 APS_kinase: Adenylyls 95.9 0.059 1.3E-06 51.9 10.0 90 129-232 1-90 (156)
195 TIGR00064 ftsY signal recognit 95.9 0.08 1.7E-06 55.1 11.8 91 127-227 69-164 (272)
196 PRK09183 transposase/IS protei 95.9 0.017 3.7E-07 59.6 6.6 38 127-166 99-136 (259)
197 PRK00080 ruvB Holliday junctio 95.9 0.015 3.2E-07 61.6 6.3 25 131-155 52-76 (328)
198 PF08206 OB_RNB: Ribonuclease 95.9 0.0088 1.9E-07 48.0 3.5 46 12-64 1-46 (58)
199 PF00448 SRP54: SRP54-type pro 95.9 0.087 1.9E-06 52.2 11.4 86 132-226 3-92 (196)
200 PRK08181 transposase; Validate 95.9 0.014 3.1E-07 60.7 6.0 38 128-167 104-141 (269)
201 PF03796 DnaB_C: DnaB-like hel 95.9 0.065 1.4E-06 54.6 10.7 63 114-177 2-65 (259)
202 PRK07261 topology modulation p 95.9 0.0068 1.5E-07 58.4 3.4 25 131-155 1-25 (171)
203 PTZ00454 26S protease regulato 95.8 0.023 5E-07 62.3 7.7 45 7-57 66-111 (398)
204 PF01637 Arch_ATPase: Archaeal 95.8 0.0041 8.9E-08 60.3 1.6 95 128-230 18-131 (234)
205 smart00357 CSP Cold shock prot 95.8 0.024 5.3E-07 44.6 5.8 48 11-63 1-50 (64)
206 PRK06921 hypothetical protein; 95.8 0.022 4.7E-07 59.1 6.9 49 119-168 104-154 (266)
207 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.015 3.2E-07 57.3 5.4 41 127-169 35-75 (226)
208 PRK05800 cobU adenosylcobinami 95.7 0.021 4.6E-07 55.3 6.3 36 132-172 3-38 (170)
209 PF13191 AAA_16: AAA ATPase do 95.7 0.027 5.9E-07 53.1 6.8 46 124-171 18-63 (185)
210 PRK13341 recombination factor 95.7 0.013 2.7E-07 68.9 5.4 28 128-155 50-77 (725)
211 TIGR03015 pepcterm_ATPase puta 95.7 0.026 5.6E-07 57.1 7.0 25 131-155 44-68 (269)
212 PF00931 NB-ARC: NB-ARC domain 95.7 0.0044 9.5E-08 63.1 1.4 98 122-230 10-114 (287)
213 PF04665 Pox_A32: Poxvirus A32 95.6 0.036 7.7E-07 57.0 7.7 136 132-305 15-156 (241)
214 PRK05541 adenylylsulfate kinas 95.6 0.083 1.8E-06 50.4 9.8 35 126-160 3-37 (176)
215 PRK14087 dnaA chromosomal repl 95.6 0.028 6.1E-07 62.5 7.4 38 132-169 143-180 (450)
216 PRK06893 DNA replication initi 95.6 0.045 9.7E-07 55.1 8.2 34 133-168 42-75 (229)
217 COG1066 Sms Predicted ATP-depe 95.6 0.046 1E-06 59.9 8.6 103 113-227 74-178 (456)
218 PRK12377 putative replication 95.6 0.034 7.4E-07 57.3 7.3 37 130-168 101-137 (248)
219 COG0552 FtsY Signal recognitio 95.6 0.068 1.5E-06 57.2 9.7 84 130-222 139-227 (340)
220 PRK06526 transposase; Provisio 95.5 0.023 5.1E-07 58.5 5.9 35 129-165 97-131 (254)
221 COG1116 TauB ABC-type nitrate/ 95.5 0.0095 2.1E-07 61.2 3.0 29 124-152 23-51 (248)
222 smart00382 AAA ATPases associa 95.5 0.0097 2.1E-07 51.6 2.6 43 486-531 5-47 (148)
223 cd00544 CobU Adenosylcobinamid 95.5 0.017 3.7E-07 56.0 4.6 88 133-235 2-91 (169)
224 TIGR03689 pup_AAA proteasome A 95.4 0.034 7.5E-07 62.8 7.4 83 132-231 218-303 (512)
225 PF13207 AAA_17: AAA domain; P 95.4 0.012 2.6E-07 52.2 3.1 23 132-154 1-23 (121)
226 cd02027 APSK Adenosine 5'-phos 95.4 0.14 3.1E-06 48.1 10.5 75 133-221 2-76 (149)
227 PRK14957 DNA polymerase III su 95.4 0.034 7.3E-07 63.4 7.2 29 128-156 35-64 (546)
228 PRK09435 membrane ATPase/prote 95.3 0.072 1.6E-06 57.2 9.1 99 120-222 45-154 (332)
229 PRK08727 hypothetical protein; 95.3 0.077 1.7E-06 53.6 8.8 38 131-170 42-79 (233)
230 PRK14088 dnaA chromosomal repl 95.2 0.076 1.6E-06 58.9 9.1 38 131-168 131-168 (440)
231 PRK08116 hypothetical protein; 95.2 0.049 1.1E-06 56.5 7.1 33 133-167 117-149 (268)
232 PRK14962 DNA polymerase III su 95.2 0.05 1.1E-06 61.0 7.6 26 132-157 38-63 (472)
233 PF13671 AAA_33: AAA domain; P 95.1 0.078 1.7E-06 48.2 7.5 74 133-221 2-75 (143)
234 cd00984 DnaB_C DnaB helicase C 95.1 0.033 7.2E-07 55.6 5.5 50 127-177 10-59 (242)
235 COG1222 RPT1 ATP-dependent 26S 95.1 0.13 2.8E-06 55.7 9.9 48 4-57 69-117 (406)
236 COG3839 MalK ABC-type sugar tr 95.0 0.013 2.9E-07 62.8 2.5 17 489-505 35-51 (338)
237 PRK14956 DNA polymerase III su 95.0 0.038 8.1E-07 62.0 6.1 100 130-236 40-141 (484)
238 TIGR03499 FlhF flagellar biosy 95.0 0.035 7.6E-07 57.9 5.5 43 128-170 192-234 (282)
239 TIGR01425 SRP54_euk signal rec 95.0 0.14 3.1E-06 56.7 10.5 50 129-180 99-148 (429)
240 COG1124 DppF ABC-type dipeptid 95.0 0.016 3.4E-07 59.5 2.8 28 125-152 28-55 (252)
241 KOG1352|consensus 95.0 0.027 5.9E-07 61.1 4.7 71 491-569 253-367 (618)
242 PRK00889 adenylylsulfate kinas 95.0 0.19 4.1E-06 47.9 10.1 29 129-157 3-31 (175)
243 PF03308 ArgK: ArgK protein; 95.0 0.17 3.7E-06 52.6 10.3 50 119-170 17-67 (266)
244 PRK10867 signal recognition pa 95.0 0.14 3.1E-06 56.8 10.3 92 130-229 100-195 (433)
245 COG3842 PotA ABC-type spermidi 95.0 0.017 3.6E-07 62.4 3.0 17 489-505 37-53 (352)
246 cd03222 ABC_RNaseL_inhibitor T 94.9 0.02 4.3E-07 55.9 3.2 35 120-154 15-49 (177)
247 PRK14960 DNA polymerase III su 94.9 0.043 9.4E-07 63.6 6.3 27 131-157 38-64 (702)
248 TIGR01166 cbiO cobalt transpor 94.9 0.019 4E-07 55.6 2.9 29 125-153 13-41 (190)
249 PRK14958 DNA polymerase III su 94.9 0.04 8.6E-07 62.3 5.8 26 131-156 39-64 (509)
250 TIGR00455 apsK adenylylsulfate 94.9 0.31 6.6E-06 47.0 11.2 82 128-223 16-97 (184)
251 PRK07994 DNA polymerase III su 94.8 0.047 1E-06 63.3 6.2 105 133-244 41-147 (647)
252 TIGR00750 lao LAO/AO transport 94.8 0.052 1.1E-06 57.0 6.1 42 126-169 30-71 (300)
253 cd03229 ABC_Class3 This class 94.8 0.021 4.6E-07 54.9 2.9 29 125-153 21-49 (178)
254 cd03254 ABCC_Glucan_exporter_l 94.8 0.021 4.5E-07 56.7 2.9 30 125-154 24-53 (229)
255 PRK14949 DNA polymerase III su 94.7 0.045 9.8E-07 65.3 6.0 104 133-244 41-147 (944)
256 COG2874 FlaH Predicted ATPases 94.7 0.3 6.6E-06 49.6 10.9 147 130-307 28-191 (235)
257 TIGR00959 ffh signal recogniti 94.7 0.19 4E-06 55.9 10.3 91 131-229 100-194 (428)
258 PTZ00454 26S protease regulato 94.7 0.11 2.5E-06 56.9 8.6 45 416-466 66-111 (398)
259 PF13521 AAA_28: AAA domain; P 94.7 0.036 7.8E-07 52.3 4.1 36 132-177 1-36 (163)
260 cd03260 ABC_PstB_phosphate_tra 94.7 0.024 5.2E-07 56.3 3.0 30 125-154 21-50 (227)
261 TIGR03608 L_ocin_972_ABC putat 94.7 0.023 5E-07 55.4 2.9 29 125-153 19-47 (206)
262 TIGR02211 LolD_lipo_ex lipopro 94.7 0.024 5.2E-07 56.0 3.0 29 125-153 26-54 (221)
263 PRK14951 DNA polymerase III su 94.6 0.048 1E-06 63.0 5.8 108 133-244 41-152 (618)
264 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.6 0.024 5.2E-07 55.9 3.0 29 125-153 25-53 (218)
265 cd03225 ABC_cobalt_CbiO_domain 94.6 0.024 5.2E-07 55.6 2.9 29 125-153 22-50 (211)
266 PRK14722 flhF flagellar biosyn 94.6 0.17 3.6E-06 55.2 9.6 58 113-170 119-177 (374)
267 cd03224 ABC_TM1139_LivF_branch 94.6 0.024 5.2E-07 55.9 2.9 29 125-153 21-49 (222)
268 cd03292 ABC_FtsE_transporter F 94.6 0.025 5.5E-07 55.4 3.0 29 125-153 22-50 (214)
269 COG3842 PotA ABC-type spermidi 94.6 0.024 5.1E-07 61.2 3.0 37 117-153 17-54 (352)
270 TIGR02315 ABC_phnC phosphonate 94.6 0.025 5.4E-07 56.7 2.9 29 125-153 23-51 (243)
271 PF00005 ABC_tran: ABC transpo 94.6 0.023 5E-07 51.5 2.4 30 125-154 6-35 (137)
272 COG0593 DnaA ATPase involved i 94.6 0.054 1.2E-06 59.6 5.7 39 129-167 112-150 (408)
273 PRK13540 cytochrome c biogenes 94.6 0.027 5.8E-07 55.1 3.0 29 125-153 22-50 (200)
274 cd03269 ABC_putative_ATPase Th 94.5 0.026 5.7E-07 55.3 3.0 30 124-153 20-49 (210)
275 cd00820 PEPCK_HprK Phosphoenol 94.5 0.027 5.7E-07 51.1 2.7 27 125-151 10-36 (107)
276 TIGR00960 3a0501s02 Type II (G 94.5 0.026 5.7E-07 55.6 3.0 29 125-153 24-52 (216)
277 cd03226 ABC_cobalt_CbiO_domain 94.5 0.025 5.5E-07 55.3 2.8 29 125-153 21-49 (205)
278 cd03258 ABC_MetN_methionine_tr 94.5 0.026 5.6E-07 56.3 2.9 30 125-154 26-55 (233)
279 PRK03846 adenylylsulfate kinas 94.5 0.26 5.5E-06 48.4 9.8 29 129-157 23-51 (198)
280 PRK14964 DNA polymerase III su 94.5 0.064 1.4E-06 60.4 6.2 27 130-156 35-61 (491)
281 PRK13541 cytochrome c biogenes 94.5 0.027 5.9E-07 54.8 2.9 33 121-153 17-49 (195)
282 PRK14086 dnaA chromosomal repl 94.5 0.12 2.5E-06 59.7 8.3 38 133-170 317-354 (617)
283 cd03262 ABC_HisP_GlnQ_permease 94.4 0.028 6E-07 55.1 2.9 29 125-153 21-49 (213)
284 cd03218 ABC_YhbG The ABC trans 94.4 0.027 6E-07 56.0 2.9 29 125-153 21-49 (232)
285 cd03256 ABC_PhnC_transporter A 94.4 0.028 6E-07 56.2 2.9 29 125-153 22-50 (241)
286 CHL00181 cbbX CbbX; Provisiona 94.4 0.16 3.6E-06 53.2 8.8 31 126-156 55-85 (287)
287 PRK12727 flagellar biosynthesi 94.4 0.13 2.8E-06 58.5 8.4 46 125-170 345-390 (559)
288 cd03235 ABC_Metallic_Cations A 94.4 0.026 5.6E-07 55.5 2.6 29 125-153 20-48 (213)
289 PRK05642 DNA replication initi 94.4 0.12 2.6E-06 52.3 7.5 36 132-169 47-82 (234)
290 TIGR03410 urea_trans_UrtE urea 94.4 0.028 6E-07 56.0 2.9 32 123-154 19-50 (230)
291 PRK11124 artP arginine transpo 94.4 0.029 6.3E-07 56.3 3.0 29 125-153 23-51 (242)
292 COG1155 NtpA Archaeal/vacuolar 94.4 0.055 1.2E-06 60.7 5.3 220 190-413 290-527 (588)
293 PRK14247 phosphate ABC transpo 94.4 0.029 6.3E-07 56.6 3.0 30 125-154 24-53 (250)
294 cd03257 ABC_NikE_OppD_transpor 94.4 0.029 6.3E-07 55.5 2.9 29 125-153 26-54 (228)
295 PRK07940 DNA polymerase III su 94.4 0.1 2.2E-06 57.2 7.4 29 129-157 35-63 (394)
296 TIGR00678 holB DNA polymerase 94.4 0.086 1.9E-06 51.0 6.1 26 131-156 15-40 (188)
297 cd03219 ABC_Mj1267_LivG_branch 94.4 0.027 5.8E-07 56.2 2.6 29 125-153 21-49 (236)
298 PF13086 AAA_11: AAA domain; P 94.4 0.058 1.3E-06 52.2 4.9 23 132-154 19-41 (236)
299 PRK13539 cytochrome c biogenes 94.4 0.03 6.5E-07 55.1 2.9 29 125-153 23-51 (207)
300 cd03296 ABC_CysA_sulfate_impor 94.3 0.03 6.6E-07 56.2 3.0 29 125-153 23-51 (239)
301 COG4619 ABC-type uncharacteriz 94.3 0.031 6.6E-07 55.1 2.8 40 116-155 14-54 (223)
302 cd03261 ABC_Org_Solvent_Resist 94.3 0.031 6.7E-07 55.9 3.0 29 125-153 21-49 (235)
303 PF05673 DUF815: Protein of un 94.3 0.096 2.1E-06 54.0 6.5 66 129-227 51-116 (249)
304 PRK06620 hypothetical protein; 94.3 0.12 2.7E-06 51.8 7.2 20 487-506 48-67 (214)
305 TIGR01978 sufC FeS assembly AT 94.3 0.031 6.8E-07 55.9 2.9 29 125-153 21-49 (243)
306 cd03238 ABC_UvrA The excision 94.3 0.031 6.8E-07 54.5 2.8 27 125-151 16-42 (176)
307 cd03265 ABC_DrrA DrrA is the A 94.3 0.032 7E-07 55.2 3.0 31 123-153 19-49 (220)
308 TIGR03864 PQQ_ABC_ATP ABC tran 94.3 0.032 7E-07 55.9 3.0 29 125-153 22-50 (236)
309 TIGR00665 DnaB replicative DNA 94.3 0.071 1.5E-06 58.5 5.9 64 113-177 177-241 (434)
310 cd03259 ABC_Carb_Solutes_like 94.3 0.032 7E-07 54.8 2.9 29 125-153 21-49 (213)
311 PF07728 AAA_5: AAA domain (dy 94.3 0.07 1.5E-06 48.7 5.0 44 133-182 2-45 (139)
312 cd03293 ABC_NrtD_SsuB_transpor 94.3 0.031 6.7E-07 55.3 2.8 29 125-153 25-53 (220)
313 cd03251 ABCC_MsbA MsbA is an e 94.3 0.033 7.1E-07 55.5 3.0 31 124-154 22-52 (234)
314 PRK12323 DNA polymerase III su 94.2 0.085 1.8E-06 61.2 6.6 110 131-244 39-152 (700)
315 cd03295 ABC_OpuCA_Osmoprotecti 94.2 0.032 7E-07 56.1 2.9 29 125-153 22-50 (242)
316 PRK14963 DNA polymerase III su 94.2 0.14 3.1E-06 57.8 8.3 28 131-158 37-64 (504)
317 PRK14961 DNA polymerase III su 94.2 0.072 1.6E-06 57.4 5.7 24 132-155 40-63 (363)
318 COG3638 ABC-type phosphate/pho 94.2 0.043 9.4E-07 56.3 3.7 52 484-535 20-83 (258)
319 cd03215 ABC_Carb_Monos_II This 94.2 0.032 7E-07 53.8 2.8 30 125-154 21-50 (182)
320 cd03236 ABC_RNaseL_inhibitor_d 94.2 0.034 7.4E-07 57.1 3.1 35 120-154 16-50 (255)
321 PF13479 AAA_24: AAA domain 94.2 0.098 2.1E-06 52.1 6.2 86 129-238 2-89 (213)
322 PRK14267 phosphate ABC transpo 94.2 0.033 7.2E-07 56.3 2.9 30 125-154 25-54 (253)
323 cd03266 ABC_NatA_sodium_export 94.2 0.034 7.4E-07 54.8 2.9 30 125-154 26-55 (218)
324 PRK06645 DNA polymerase III su 94.2 0.091 2E-06 59.5 6.6 28 130-157 43-70 (507)
325 COG1120 FepC ABC-type cobalami 94.2 0.032 7E-07 57.9 2.8 33 123-155 21-53 (258)
326 PRK11701 phnK phosphonate C-P 94.2 0.034 7.4E-07 56.5 2.9 33 122-154 24-56 (258)
327 cd03230 ABC_DR_subfamily_A Thi 94.2 0.035 7.6E-07 53.1 2.8 29 125-153 21-49 (173)
328 PRK14255 phosphate ABC transpo 94.1 0.034 7.4E-07 56.2 2.9 29 125-153 26-54 (252)
329 TIGR02673 FtsE cell division A 94.1 0.036 7.7E-07 54.5 2.9 29 125-153 23-51 (214)
330 PF05729 NACHT: NACHT domain 94.1 0.059 1.3E-06 49.5 4.2 27 488-514 5-31 (166)
331 PRK11248 tauB taurine transpor 94.1 0.036 7.7E-07 56.6 3.0 29 125-153 22-50 (255)
332 PRK08939 primosomal protein Dn 94.1 0.11 2.3E-06 55.1 6.7 38 129-168 155-192 (306)
333 PRK08903 DnaA regulatory inact 94.1 0.3 6.5E-06 48.5 9.5 40 129-170 41-80 (227)
334 PRK07952 DNA replication prote 94.1 0.14 3E-06 52.7 7.2 34 131-166 100-133 (244)
335 PRK14274 phosphate ABC transpo 94.1 0.037 7.9E-07 56.3 3.0 30 125-154 33-62 (259)
336 PRK14240 phosphate transporter 94.1 0.036 7.8E-07 56.0 2.9 32 122-153 21-52 (250)
337 cd03247 ABCC_cytochrome_bd The 94.1 0.038 8.3E-07 53.0 3.0 32 123-154 21-52 (178)
338 cd03216 ABC_Carb_Monos_I This 94.1 0.037 8E-07 52.7 2.9 29 125-153 21-49 (163)
339 TIGR00362 DnaA chromosomal rep 94.1 0.061 1.3E-06 58.5 4.9 39 130-168 136-174 (405)
340 cd03298 ABC_ThiQ_thiamine_tran 94.1 0.037 8.1E-07 54.3 2.9 32 122-153 16-47 (211)
341 cd02025 PanK Pantothenate kina 94.1 0.063 1.4E-06 54.0 4.6 24 133-156 2-25 (220)
342 PRK14250 phosphate ABC transpo 94.1 0.038 8.1E-07 55.7 3.0 32 122-153 21-52 (241)
343 PRK13543 cytochrome c biogenes 94.1 0.037 8E-07 54.8 2.9 29 125-153 32-60 (214)
344 cd03301 ABC_MalK_N The N-termi 94.0 0.039 8.4E-07 54.2 2.9 29 125-153 21-49 (213)
345 TIGR02868 CydC thiol reductant 94.0 0.032 6.9E-07 62.5 2.7 77 489-573 367-474 (529)
346 cd03245 ABCC_bacteriocin_expor 94.0 0.038 8.3E-07 54.5 2.9 29 125-153 25-53 (220)
347 cd03250 ABCC_MRP_domain1 Domai 94.0 0.038 8.3E-07 54.0 2.9 32 124-155 25-56 (204)
348 PRK10584 putative ABC transpor 94.0 0.039 8.4E-07 54.9 2.9 29 125-153 31-59 (228)
349 cd03263 ABC_subfamily_A The AB 94.0 0.039 8.5E-07 54.4 2.9 29 125-153 23-51 (220)
350 cd03223 ABCD_peroxisomal_ALDP 94.0 0.041 8.8E-07 52.5 2.9 30 125-154 22-51 (166)
351 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.0 0.038 8.3E-07 55.3 2.8 31 124-154 23-53 (238)
352 PRK11629 lolD lipoprotein tran 94.0 0.04 8.7E-07 55.1 3.0 29 125-153 30-58 (233)
353 PRK10895 lipopolysaccharide AB 94.0 0.04 8.8E-07 55.3 3.0 30 124-153 23-52 (241)
354 cd03252 ABCC_Hemolysin The ABC 94.0 0.039 8.5E-07 55.1 2.9 31 124-154 22-52 (237)
355 cd03231 ABC_CcmA_heme_exporter 94.0 0.041 8.8E-07 54.0 2.9 30 124-153 20-49 (201)
356 TIGR02880 cbbX_cfxQ probable R 93.9 0.33 7.1E-06 50.8 9.8 27 130-156 58-84 (284)
357 cd03248 ABCC_TAP TAP, the Tran 93.9 0.04 8.7E-07 54.7 2.9 30 125-154 35-64 (226)
358 PRK10247 putative ABC transpor 93.9 0.041 8.9E-07 54.9 3.0 29 125-153 28-56 (225)
359 PRK11264 putative amino-acid A 93.9 0.041 8.8E-07 55.5 3.0 29 125-153 24-52 (250)
360 TIGR01184 ntrCD nitrate transp 93.9 0.04 8.7E-07 55.2 2.9 30 125-154 6-35 (230)
361 PRK12422 chromosomal replicati 93.9 0.1 2.2E-06 58.1 6.3 35 132-168 143-177 (445)
362 TIGR03005 ectoine_ehuA ectoine 93.9 0.041 8.9E-07 55.7 3.0 30 124-153 20-49 (252)
363 PRK09493 glnQ glutamine ABC tr 93.9 0.042 9E-07 55.2 3.0 30 124-153 21-50 (240)
364 cd02028 UMPK_like Uridine mono 93.9 0.072 1.6E-06 51.8 4.5 29 133-161 2-30 (179)
365 TIGR02639 ClpA ATP-dependent C 93.9 0.11 2.4E-06 61.2 6.9 27 130-156 203-229 (731)
366 TIGR02770 nickel_nikD nickel i 93.9 0.04 8.8E-07 55.0 2.9 30 125-154 7-36 (230)
367 PF13245 AAA_19: Part of AAA d 93.9 0.06 1.3E-06 45.5 3.4 56 490-545 17-73 (76)
368 cd03246 ABCC_Protease_Secretio 93.9 0.045 9.8E-07 52.4 3.1 30 125-154 23-52 (173)
369 PRK10908 cell division protein 93.9 0.042 9.1E-07 54.5 2.9 29 125-153 23-51 (222)
370 PRK10575 iron-hydroxamate tran 93.9 0.039 8.4E-07 56.5 2.8 29 125-153 32-60 (265)
371 cd03290 ABCC_SUR1_N The SUR do 93.9 0.042 9.1E-07 54.3 2.9 30 125-154 22-51 (218)
372 PRK14242 phosphate transporter 93.9 0.042 9.1E-07 55.6 2.9 29 125-153 27-55 (253)
373 PRK10865 protein disaggregatio 93.9 0.12 2.7E-06 61.8 7.3 84 129-233 198-287 (857)
374 cd03268 ABC_BcrA_bacitracin_re 93.9 0.044 9.5E-07 53.7 3.0 29 125-153 21-49 (208)
375 COG1134 TagH ABC-type polysacc 93.8 0.041 8.9E-07 56.6 2.8 34 122-155 45-78 (249)
376 cd03217 ABC_FeS_Assembly ABC-t 93.8 0.044 9.5E-07 53.8 2.9 30 124-153 20-49 (200)
377 TIGR02324 CP_lyasePhnL phospho 93.8 0.045 9.6E-07 54.3 2.9 29 125-153 29-57 (224)
378 PRK14241 phosphate transporter 93.8 0.044 9.5E-07 55.7 2.9 30 125-154 25-54 (258)
379 TIGR01188 drrA daunorubicin re 93.8 0.043 9.4E-07 57.4 3.0 30 125-154 14-43 (302)
380 TIGR03574 selen_PSTK L-seryl-t 93.8 0.42 9.2E-06 48.4 10.1 25 133-157 2-26 (249)
381 PRK05480 uridine/cytidine kina 93.8 0.079 1.7E-06 52.1 4.6 27 128-154 4-30 (209)
382 PRK10771 thiQ thiamine transpo 93.8 0.044 9.6E-07 54.8 2.9 32 122-153 17-48 (232)
383 cd03214 ABC_Iron-Siderophores_ 93.8 0.046 9.9E-07 52.7 2.9 30 125-154 20-49 (180)
384 PRK15177 Vi polysaccharide exp 93.8 0.046 9.9E-07 54.4 3.0 31 125-155 8-38 (213)
385 COG1116 TauB ABC-type nitrate/ 93.8 0.036 7.9E-07 57.0 2.3 17 489-505 35-51 (248)
386 PTZ00301 uridine kinase; Provi 93.8 0.077 1.7E-06 53.3 4.6 25 133-157 6-30 (210)
387 PRK15056 manganese/iron transp 93.8 0.044 9.6E-07 56.4 3.0 31 123-153 26-56 (272)
388 TIGR03345 VI_ClpV1 type VI sec 93.8 0.13 2.7E-06 61.8 7.1 29 129-157 207-235 (852)
389 PRK11831 putative ABC transpor 93.7 0.045 9.8E-07 56.2 2.9 32 122-153 25-56 (269)
390 COG3839 MalK ABC-type sugar tr 93.7 0.044 9.6E-07 58.9 2.9 30 123-152 22-51 (338)
391 PRK14262 phosphate ABC transpo 93.7 0.047 1E-06 55.1 3.0 29 125-153 24-52 (250)
392 PRK14723 flhF flagellar biosyn 93.7 0.21 4.6E-06 58.9 8.7 42 128-169 183-224 (767)
393 PHA00729 NTP-binding motif con 93.7 0.058 1.3E-06 55.0 3.6 37 118-155 6-42 (226)
394 PRK13538 cytochrome c biogenes 93.7 0.047 1E-06 53.5 2.9 32 122-153 19-50 (204)
395 PRK14273 phosphate ABC transpo 93.7 0.047 1E-06 55.3 3.0 30 125-154 28-57 (254)
396 PRK11432 fbpC ferric transport 93.7 0.046 9.9E-07 58.9 3.0 31 123-153 25-55 (351)
397 PRK11247 ssuB aliphatic sulfon 93.7 0.047 1E-06 56.0 3.0 30 124-153 32-61 (257)
398 PRK12723 flagellar biosynthesi 93.7 0.55 1.2E-05 51.5 11.3 43 128-170 172-216 (388)
399 PRK14531 adenylate kinase; Pro 93.7 0.05 1.1E-06 52.7 3.0 24 131-154 3-26 (183)
400 PRK14239 phosphate transporter 93.7 0.048 1E-06 55.1 2.9 29 125-153 26-54 (252)
401 PF13238 AAA_18: AAA domain; P 93.7 0.056 1.2E-06 47.7 3.1 22 133-154 1-22 (129)
402 PRK10851 sulfate/thiosulfate t 93.7 0.047 1E-06 58.8 3.0 32 123-154 21-52 (353)
403 PRK14248 phosphate ABC transpo 93.7 0.048 1E-06 55.8 2.9 29 125-153 42-70 (268)
404 PRK11144 modC molybdate transp 93.7 0.054 1.2E-06 58.2 3.4 34 120-153 14-47 (352)
405 TIGR02323 CP_lyasePhnK phospho 93.6 0.048 1E-06 55.1 2.9 30 125-154 24-53 (253)
406 PRK14256 phosphate ABC transpo 93.6 0.049 1.1E-06 55.1 3.0 30 125-154 25-54 (252)
407 PRK12724 flagellar biosynthesi 93.6 0.2 4.3E-06 55.5 7.8 42 128-170 221-262 (432)
408 TIGR03411 urea_trans_UrtD urea 93.6 0.05 1.1E-06 54.6 2.9 29 125-153 23-51 (242)
409 PRK14237 phosphate transporter 93.6 0.051 1.1E-06 55.8 3.0 29 125-153 41-69 (267)
410 PRK11889 flhF flagellar biosyn 93.6 0.35 7.6E-06 53.5 9.5 50 128-179 239-289 (436)
411 PRK13648 cbiO cobalt transport 93.6 0.05 1.1E-06 55.8 3.0 33 122-154 27-59 (269)
412 cd03253 ABCC_ATM1_transporter 93.6 0.051 1.1E-06 54.2 3.0 30 124-153 21-50 (236)
413 TIGR03740 galliderm_ABC gallid 93.6 0.05 1.1E-06 53.9 2.9 29 125-153 21-49 (223)
414 PRK10253 iron-enterobactin tra 93.6 0.047 1E-06 55.9 2.8 29 125-153 28-56 (265)
415 PRK14245 phosphate ABC transpo 93.6 0.051 1.1E-06 54.9 3.0 29 124-152 23-51 (250)
416 PRK13548 hmuV hemin importer A 93.6 0.05 1.1E-06 55.5 2.9 29 125-153 23-51 (258)
417 cd03233 ABC_PDR_domain1 The pl 93.6 0.046 1E-06 53.7 2.6 30 125-154 28-57 (202)
418 KOG0744|consensus 93.6 0.22 4.7E-06 53.5 7.6 97 132-246 179-277 (423)
419 COG3854 SpoIIIAA ncharacterize 93.6 0.066 1.4E-06 55.0 3.7 41 133-173 140-181 (308)
420 TIGR00972 3a0107s01c2 phosphat 93.6 0.051 1.1E-06 54.8 3.0 29 125-153 22-50 (247)
421 TIGR02858 spore_III_AA stage I 93.6 0.04 8.8E-07 57.4 2.2 41 485-525 113-156 (270)
422 PRK13645 cbiO cobalt transport 93.6 0.05 1.1E-06 56.4 2.9 30 125-154 32-61 (289)
423 PRK14272 phosphate ABC transpo 93.5 0.053 1.1E-06 54.7 3.0 29 125-153 25-53 (252)
424 cd03237 ABC_RNaseL_inhibitor_d 93.5 0.053 1.2E-06 55.3 3.0 29 126-154 21-49 (246)
425 PRK13638 cbiO cobalt transport 93.5 0.049 1.1E-06 55.9 2.7 29 125-153 22-50 (271)
426 PRK11650 ugpC glycerol-3-phosp 93.5 0.051 1.1E-06 58.6 3.0 31 123-153 23-53 (356)
427 PRK14266 phosphate ABC transpo 93.5 0.054 1.2E-06 54.6 3.0 30 124-153 23-52 (250)
428 cd03213 ABCG_EPDR ABCG transpo 93.5 0.053 1.1E-06 53.0 2.8 30 125-154 30-59 (194)
429 PRK14243 phosphate transporter 93.5 0.054 1.2E-06 55.5 3.0 29 125-153 31-59 (264)
430 TIGR00235 udk uridine kinase. 93.5 0.057 1.2E-06 53.2 3.1 27 129-155 5-31 (207)
431 PRK13643 cbiO cobalt transport 93.5 0.051 1.1E-06 56.5 2.9 32 122-153 24-55 (288)
432 cd01120 RecA-like_NTPases RecA 93.5 0.29 6.2E-06 44.5 7.5 41 487-529 3-43 (165)
433 PRK13649 cbiO cobalt transport 93.5 0.052 1.1E-06 55.9 2.9 29 125-153 28-56 (280)
434 TIGR00968 3a0106s01 sulfate AB 93.5 0.054 1.2E-06 54.5 2.9 29 125-153 21-49 (237)
435 TIGR01288 nodI ATP-binding ABC 93.5 0.053 1.1E-06 56.8 2.9 29 125-153 25-53 (303)
436 PRK09544 znuC high-affinity zi 93.5 0.055 1.2E-06 55.3 3.0 29 125-153 25-53 (251)
437 PRK14530 adenylate kinase; Pro 93.5 0.055 1.2E-06 53.6 2.9 25 130-154 3-27 (215)
438 TIGR02881 spore_V_K stage V sp 93.5 0.11 2.4E-06 53.1 5.3 24 486-509 45-68 (261)
439 cd03267 ABC_NatA_like Similar 93.5 0.054 1.2E-06 54.5 2.9 30 125-154 42-71 (236)
440 PRK14244 phosphate ABC transpo 93.5 0.056 1.2E-06 54.7 3.0 29 125-153 26-54 (251)
441 PRK06217 hypothetical protein; 93.5 0.044 9.5E-07 53.0 2.2 25 131-155 2-26 (183)
442 cd03228 ABCC_MRP_Like The MRP 93.5 0.057 1.2E-06 51.6 2.9 30 125-154 23-52 (171)
443 PRK09165 replicative DNA helic 93.5 0.11 2.4E-06 58.5 5.7 45 113-157 199-244 (497)
444 PRK14238 phosphate transporter 93.4 0.057 1.2E-06 55.6 3.0 30 125-154 45-74 (271)
445 PRK14269 phosphate ABC transpo 93.4 0.057 1.2E-06 54.5 3.0 30 124-153 22-51 (246)
446 cd00820 PEPCK_HprK Phosphoenol 93.4 0.062 1.3E-06 48.7 2.9 61 488-561 20-83 (107)
447 TIGR03265 PhnT2 putative 2-ami 93.4 0.055 1.2E-06 58.3 3.0 31 123-153 23-53 (353)
448 TIGR02769 nickel_nikE nickel i 93.4 0.055 1.2E-06 55.4 2.9 31 123-153 30-60 (265)
449 PRK13641 cbiO cobalt transport 93.4 0.056 1.2E-06 56.2 3.0 31 124-154 27-57 (287)
450 TIGR01189 ccmA heme ABC export 93.4 0.06 1.3E-06 52.5 3.0 29 124-152 20-48 (198)
451 PRK15093 antimicrobial peptide 93.4 0.056 1.2E-06 57.5 3.0 36 119-154 21-57 (330)
452 COG0563 Adk Adenylate kinase a 93.4 0.058 1.2E-06 52.8 2.9 22 132-153 2-23 (178)
453 PRK14253 phosphate ABC transpo 93.4 0.058 1.3E-06 54.4 3.0 29 125-153 24-52 (249)
454 PRK11300 livG leucine/isoleuci 93.4 0.056 1.2E-06 54.7 2.9 29 125-153 26-54 (255)
455 TIGR03771 anch_rpt_ABC anchore 93.4 0.06 1.3E-06 53.7 3.0 28 126-153 2-29 (223)
456 CHL00131 ycf16 sulfate ABC tra 93.4 0.052 1.1E-06 54.8 2.6 28 125-152 28-55 (252)
457 PRK09984 phosphonate/organopho 93.4 0.056 1.2E-06 55.1 2.8 29 125-153 25-53 (262)
458 PRK13632 cbiO cobalt transport 93.4 0.058 1.3E-06 55.5 3.0 30 125-154 30-59 (271)
459 PRK10744 pstB phosphate transp 93.4 0.058 1.3E-06 55.0 2.9 30 125-154 34-63 (260)
460 PRK10418 nikD nickel transport 93.3 0.058 1.3E-06 54.8 2.9 29 125-153 24-52 (254)
461 PRK14261 phosphate ABC transpo 93.3 0.06 1.3E-06 54.5 3.0 28 125-152 27-54 (253)
462 cd03114 ArgK-like The function 93.3 0.31 6.8E-06 46.0 7.6 36 132-169 1-36 (148)
463 PRK14251 phosphate ABC transpo 93.3 0.062 1.3E-06 54.3 3.0 31 124-154 24-54 (251)
464 PRK13651 cobalt transporter AT 93.3 0.058 1.3E-06 56.8 2.9 32 123-154 26-57 (305)
465 cd03369 ABCC_NFT1 Domain 2 of 93.3 0.062 1.4E-06 52.7 2.9 29 125-153 29-57 (207)
466 cd03264 ABC_drug_resistance_li 93.3 0.059 1.3E-06 52.9 2.8 28 125-153 21-48 (211)
467 PRK14268 phosphate ABC transpo 93.3 0.062 1.3E-06 54.7 3.0 30 124-153 32-61 (258)
468 PRK14249 phosphate ABC transpo 93.3 0.061 1.3E-06 54.4 2.9 29 125-153 25-53 (251)
469 PRK10419 nikE nickel transport 93.3 0.06 1.3E-06 55.3 2.9 31 123-153 31-61 (268)
470 PRK14270 phosphate ABC transpo 93.2 0.063 1.4E-06 54.3 3.0 29 125-153 25-53 (251)
471 COG4525 TauB ABC-type taurine 93.2 0.064 1.4E-06 54.0 2.9 31 125-155 26-56 (259)
472 cd00267 ABC_ATPase ABC (ATP-bi 93.2 0.067 1.5E-06 50.1 3.0 33 122-154 17-49 (157)
473 PRK08691 DNA polymerase III su 93.2 0.14 2.9E-06 60.0 5.9 27 131-157 39-65 (709)
474 PRK05703 flhF flagellar biosyn 93.2 0.35 7.6E-06 53.6 8.9 44 127-170 218-261 (424)
475 cd03234 ABCG_White The White s 93.2 0.063 1.4E-06 53.5 2.8 31 124-154 27-57 (226)
476 cd02019 NK Nucleoside/nucleoti 93.2 0.13 2.9E-06 42.1 4.3 22 133-154 2-23 (69)
477 PRK11614 livF leucine/isoleuci 93.2 0.06 1.3E-06 53.9 2.7 29 125-153 26-54 (237)
478 PRK14265 phosphate ABC transpo 93.2 0.065 1.4E-06 55.3 3.0 31 123-153 39-69 (274)
479 PRK13547 hmuV hemin importer A 93.2 0.062 1.3E-06 55.6 2.9 29 125-153 22-50 (272)
480 PRK14969 DNA polymerase III su 93.2 0.12 2.6E-06 58.6 5.5 26 131-156 39-64 (527)
481 TIGR02322 phosphon_PhnN phosph 93.2 0.069 1.5E-06 51.0 3.0 26 130-155 1-26 (179)
482 cd00227 CPT Chloramphenicol (C 93.2 0.19 4.1E-06 48.1 6.0 26 129-154 1-26 (175)
483 PRK14271 phosphate ABC transpo 93.2 0.065 1.4E-06 55.4 3.0 32 122-153 39-70 (276)
484 PRK10619 histidine/lysine/argi 93.2 0.064 1.4E-06 54.5 2.9 29 125-153 26-54 (257)
485 COG1125 OpuBA ABC-type proline 93.2 0.094 2E-06 54.6 4.1 55 477-535 10-77 (309)
486 PRK14260 phosphate ABC transpo 93.2 0.065 1.4E-06 54.6 2.9 30 125-154 28-57 (259)
487 COG1126 GlnQ ABC-type polar am 93.1 0.068 1.5E-06 54.4 2.9 27 125-151 23-49 (240)
488 PRK14275 phosphate ABC transpo 93.1 0.065 1.4E-06 55.7 3.0 31 123-153 58-88 (286)
489 PF01695 IstB_IS21: IstB-like 93.1 0.12 2.6E-06 50.4 4.6 48 127-183 44-91 (178)
490 PF08477 Miro: Miro-like prote 93.1 0.079 1.7E-06 46.5 3.1 22 132-153 1-22 (119)
491 cd03294 ABC_Pro_Gly_Bertaine T 93.1 0.067 1.5E-06 55.0 3.0 31 123-153 43-73 (269)
492 PRK13546 teichoic acids export 93.1 0.066 1.4E-06 55.2 2.9 33 122-154 42-74 (264)
493 PRK05748 replicative DNA helic 93.1 0.14 3.1E-06 56.6 5.7 63 113-176 185-248 (448)
494 TIGR00602 rad24 checkpoint pro 93.1 0.11 2.5E-06 60.1 5.1 33 123-155 103-135 (637)
495 PRK13646 cbiO cobalt transport 93.1 0.068 1.5E-06 55.5 2.9 30 125-154 28-57 (286)
496 PRK15112 antimicrobial peptide 93.0 0.07 1.5E-06 54.8 3.0 33 122-154 31-63 (267)
497 TIGR01277 thiQ thiamine ABC tr 93.0 0.07 1.5E-06 52.6 2.9 32 122-153 16-47 (213)
498 PRK14235 phosphate transporter 93.0 0.072 1.6E-06 54.7 3.1 30 125-154 40-69 (267)
499 KOG1969|consensus 93.0 0.14 3.1E-06 59.6 5.7 40 131-175 326-367 (877)
500 cd03232 ABC_PDR_domain2 The pl 93.0 0.07 1.5E-06 52.0 2.8 28 125-152 28-55 (192)
No 1
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=3.6e-99 Score=799.20 Aligned_cols=371 Identities=68% Similarity=1.083 Sum_probs=362.5
Q ss_pred CCCceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCC
Q psy3765 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEK 82 (592)
Q Consensus 3 ~~~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~ 82 (592)
++++.++++||||+++|||||||+.++||+|+++|||||++|+|+|+||.||.+.|.|+.|+++|+|++|++|+.|||.+
T Consensus 44 ~~~~~~~~~g~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~ 123 (416)
T PRK09376 44 EKGGDIFGEGVLEILPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGED 123 (416)
T ss_pred hcCCceEEEEEEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeE
Q psy3765 83 PELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAI 162 (592)
Q Consensus 83 p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~ 162 (592)
|+....|++|+.++|++|.+|.++++. +++.+|+|+||+|+|||||||++||||+|+|||||+++|++++.++|++++
T Consensus 124 ~~~~~~r~~f~~l~p~~p~~R~~le~~--~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~ 201 (416)
T PRK09376 124 PEKARNRPLFENLTPLYPNERLRLETG--NPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVH 201 (416)
T ss_pred HHHhcCCCCcccCCCCChhhcccccCC--CCcccceeeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeE
Confidence 999999999999999999999999982 259999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCC
Q psy3765 163 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242 (592)
Q Consensus 163 ~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge 242 (592)
|+|++||||++||++|++++.++||++|+|+||..|+++++.++++||||+++|+||+|++||+||||+||||+++++||
T Consensus 202 ~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~ 281 (416)
T PRK09376 202 LIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGK 281 (416)
T ss_pred EEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCC
Q psy3765 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322 (592)
Q Consensus 243 ~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S 322 (592)
+|++||++++|+.|++||||||+++++||||+|+|+|+||||+|+|||+|++++++||||+|||+||++||||||||+.|
T Consensus 282 ~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S 361 (416)
T PRK09376 282 VLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRS 361 (416)
T ss_pred CCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhcCCCCccCcccc
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhc
Q psy3765 323 GTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDA 375 (592)
Q Consensus 323 ~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~ 375 (592)
+||+++++++++|++.++++|++|+.|++++.|..++.....+++|+++|...
T Consensus 362 ~sR~~~~l~~~~~~~~~~~lR~~l~~~~~~e~~e~~~~~~~~t~~n~e~~~~~ 414 (416)
T PRK09376 362 GTRKEELLLSPEELQKVWILRKILSPMDEVEAMEFLLDKLKKTKTNEEFFDSM 414 (416)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999753
No 2
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=1.2e-99 Score=776.65 Aligned_cols=374 Identities=68% Similarity=1.075 Sum_probs=363.5
Q ss_pred CCCCCceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCC
Q psy3765 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNG 80 (592)
Q Consensus 1 ~~~~~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing 80 (592)
++++++.+.++|+|||++|||||||+.++||+++++||||||||||+|+|++||.+.|+|+.|+++|+|++|++|+.||+
T Consensus 45 ~~e~g~~~~~~GvLeil~dGfGFLR~~~~~yl~~~~DiYvSpSQIRrf~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~ 124 (422)
T COG1158 45 QAEQGEEIFGDGVLEILPDGFGFLRSADSSYLPGPDDIYVSPSQIRRFNLRTGDTVEGKVRPPKEGERYFALLKVEAVNG 124 (422)
T ss_pred HhhcCceEeeeeEEEeccCCcceeecCccccCCCCCceEECHHHHhhccCccCCEEeeeecCCCcccceeeeEEEeecCC
Confidence 35678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCC
Q psy3765 81 EKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSE 160 (592)
Q Consensus 81 ~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~ 160 (592)
.+|+..+.|++|++++|++|.+|+.+|... ..-....|+||+++|||||||.+|+|||++|||+|++.||+.+..|||+
T Consensus 125 ~~pe~~~~R~~F~~LTPlyP~erl~LE~~~-~~~~ls~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe 203 (422)
T COG1158 125 DDPEKAKNRVLFENLTPLYPNERLKLEREN-GSTDLSTRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPE 203 (422)
T ss_pred CCHHHhhccCCcccCCCCCCcceeeeecCC-CcccchhHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999732 2235788999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCC
Q psy3765 161 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240 (592)
Q Consensus 161 ~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~ 240 (592)
|++|+++|+|||+||+||.+.+++.||+||+|+||..|+++|+++++.|++++++|+||++++||+||+|||||.+.+++
T Consensus 204 ~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~S 283 (422)
T COG1158 204 CELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSS 283 (422)
T ss_pred eEEEEEEecCCchHHHHHHHhhcceEEeecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCC
Q psy3765 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLN 320 (592)
Q Consensus 241 Ge~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l 320 (592)
|++.++|.++.++++|++||++|||+|+|||+|+|+|+||+|||.||+.|++||++++|++++|||+||++++|||||+.
T Consensus 284 GkvLsGGvD~nAL~~PKrFFGAARNIEeGGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~ 363 (422)
T COG1158 284 GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDIN 363 (422)
T ss_pred CCeecCCcChhhhcCchhhhhhhhccccCcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhc
Q psy3765 321 KSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDA 375 (592)
Q Consensus 321 ~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~ 375 (592)
+|++|.+++++++++++.+|.+|++|+..++.+++..+......+.+|.+||..+
T Consensus 364 kSGTRKEeLLl~~~~l~k~w~lRr~l~~md~~~a~e~li~klk~Tk~N~eF~~~m 418 (422)
T COG1158 364 KSGTRKEELLLSPDELQKMWVLRRILSPMDEIDAIEFLIDKLKKTKTNDEFLEQM 418 (422)
T ss_pred cCCcchHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccccHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998854
No 3
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=7.9e-96 Score=796.24 Aligned_cols=367 Identities=54% Similarity=0.869 Sum_probs=358.1
Q ss_pred CCCceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCc------cccceeeee
Q psy3765 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE------RYFALLKIK 76 (592)
Q Consensus 3 ~~~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e------~~~~l~~v~ 76 (592)
+.+..++++|||||+ |||||||+. ||+++++|||||++|||+|+|+.||.|.|.|+.|++++ +|++|++|+
T Consensus 289 e~~~~~~~~GiLdi~-dg~gFlR~~--~y~~~~~Dvyvs~~qirr~~Lr~Gd~v~G~vr~p~~~e~~~~r~k~~~l~~v~ 365 (672)
T PRK12678 289 EDDVLVPVAGILDVL-DNYAFVRTS--GYLPGPNDVYVSMNQVRKNGLRKGDAVTGAVRAPREGEQGNQRQKFNPLVRLD 365 (672)
T ss_pred ccCCeeEeeEEEEec-CCeeEeeCC--CCCCCCCCeeeCHHHHHHcCCCCCCEEEEeecCCCCCccccccceeeeeeeEe
Confidence 356688999999999 899999996 99999999999999999999999999999999999988 999999999
Q ss_pred ecCCCCccccccCccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 77 KVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 77 ~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.|||.+|+.++.|++|+.|+|++|++|+++++ .++.||+|+||+|+|||||||+|||||||+|||+||++|++++..
T Consensus 366 ~vNg~~~e~~~~r~~F~~Ltp~~P~~R~~le~---e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~ 442 (672)
T PRK12678 366 SVNGMSPEEAKKRPEFGKLTPLYPNERLRLET---EPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT 442 (672)
T ss_pred eeCCCChHHhccCCCcccCCCCChHHhccccc---CcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999995 389999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhh
Q psy3765 157 NHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTV 236 (592)
Q Consensus 157 ~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~rei 236 (592)
+|++++|||++||||++||++|.+.+++.||++|+|+||..|++++++||++||||+++|+|||||+|||||||+||||+
T Consensus 443 n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ArAyrev 522 (672)
T PRK12678 443 NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLA 522 (672)
T ss_pred cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCC
Q psy3765 237 IPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPA 316 (592)
Q Consensus 237 s~~~Ge~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPA 316 (592)
++++||++|+|.|+..++.|+.||.+|+++|++||||+|+||||+|||+|++||+|+|++|+||||+|||+||++|||||
T Consensus 523 ~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE~gGSLTii~TvLVETGS~mDd~Ifeefkgtgn~elvLsR~LAerrifPA 602 (672)
T PRK12678 523 APASGRILSGGVDSTALYPPKRFFGAARNIENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPA 602 (672)
T ss_pred hcCCCCccCCCCchhhccCccHHHHHHHhhccCccceeeEEEEeccCCccCcchHHHHhhccCceeeECHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhc
Q psy3765 317 INLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDA 375 (592)
Q Consensus 317 ID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~ 375 (592)
|||+.|+||+++++++++|++.+|+||++|+.|+..+.|..|+.....+++|.+||...
T Consensus 603 IDv~~S~SR~ee~l~~~~e~~~~~~lRr~l~~~~~~~a~e~l~~~l~~t~~N~efl~~~ 661 (672)
T PRK12678 603 VDVNASGTRKEELLLSPDELAIVHKLRRVLSGLDSQQAIDLLISRLKKTKSNYEFLMQV 661 (672)
T ss_pred cCCCcCccccchhhCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999843
No 4
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=6.9e-93 Score=749.58 Aligned_cols=367 Identities=58% Similarity=0.916 Sum_probs=353.4
Q ss_pred CCCceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCC
Q psy3765 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEK 82 (592)
Q Consensus 3 ~~~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~ 82 (592)
++.....++||||+++|||||||+.++||+++++|||||++|+|+++|+.||.+.|.++. .++|+.|.||..+||.+
T Consensus 12 ~~~~~~~~~g~l~~~~~g~gflr~~~~~~~~~~~d~yv~~~~i~~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p 88 (380)
T PRK12608 12 QKQSTEEVLGVLEILGDGFGFLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTD 88 (380)
T ss_pred hhcCCCcceEEEEEcCCCceEeecCccCCCCCCCCeeeCHHHHHHhCCCCCCEEEeccCC---CCChhheEEEeccCCcC
Confidence 455667789999999999999999999999999999999999999999999999999987 67789999999999999
Q ss_pred ccccccCccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeE
Q psy3765 83 PELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAI 162 (592)
Q Consensus 83 p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~ 162 (592)
++....++.|++++|++|.+|+++|++ .-.+++|+||+|+|||||||++|+|++|+|||||+++|++.+.++|++++
T Consensus 89 ~d~~~~~~~~~~~~pi~p~~R~~ie~~---~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~ 165 (380)
T PRK12608 89 PEKLARRPHFDDLTPLHPRERLRLETG---SDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVH 165 (380)
T ss_pred chhcccccCcCcCCCCCcccccccccc---CcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 987766777999999999999999983 33899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCC
Q psy3765 163 MIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242 (592)
Q Consensus 163 ~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge 242 (592)
|++++||||++||++|++.+..+|+++++|+|+..|.+++++++++||||+++|+||||++||+||||+||||+++++||
T Consensus 166 ~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~ 245 (380)
T PRK12608 166 LMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGR 245 (380)
T ss_pred EEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCC
Q psy3765 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322 (592)
Q Consensus 243 ~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S 322 (592)
+|++|||+++|+.+++|+||||+++++||||+|+|||+||||+|+|||+|++++|+||||+|||+||++|||||||+++|
T Consensus 246 ~~s~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S 325 (380)
T PRK12608 246 TLSGGVDARALQRPKRLFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKS 325 (380)
T ss_pred CCCCCcChHHHhhhHHHHHhcCCCCCCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhc
Q psy3765 323 GTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDA 375 (592)
Q Consensus 323 ~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~ 375 (592)
+||+|+++++++|++.++++|++|+.|++.+.|..++.....+++|+++|...
T Consensus 326 ~sR~~~~l~~~~~~~~~~~~R~~l~~~~~~e~~~~~~~~~~~~~~n~~~~~~~ 378 (380)
T PRK12608 326 GTRREELLLDSKELEKVRRLRRALASRKPVEAMEALLEKLRETPDNAEFLNSV 378 (380)
T ss_pred cCcchhhcCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999753
No 5
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=5.4e-92 Score=747.26 Aligned_cols=371 Identities=68% Similarity=1.077 Sum_probs=361.0
Q ss_pred CCCCceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCC
Q psy3765 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGE 81 (592)
Q Consensus 2 ~~~~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~ 81 (592)
+++++.++++||||+++|||||||+.++||+|+++|||||++|+|+|+||.||.+.|.|+.|..++||++|++++++|+.
T Consensus 43 ~~~~~~~~~~g~le~~~~g~gflr~~~~~~~~~~~d~yvs~~~i~~~~lr~gd~v~g~~R~~~~~ER~~~Ll~v~~vn~~ 122 (415)
T TIGR00767 43 AEQGGLIFGEGVLEILPDGFGFLRSPDSSYLPGPDDIYVSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGD 122 (415)
T ss_pred hhcCCceEEEEEEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEeccccHhHHHHHhCCCccCCC
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCe
Q psy3765 82 KPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA 161 (592)
Q Consensus 82 ~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~ 161 (592)
+|+..+.++.|++++|.+|.+|..++. ++-..|+|+||+++|||+|||++|+||+|+|||||+++|++.+.++|+++
T Consensus 123 ~~e~~~~ri~Fe~LTf~YP~er~~Le~---~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv 199 (415)
T TIGR00767 123 DPEKAKNRVLFENLTPLYPNERLRLET---STEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEV 199 (415)
T ss_pred CccccCCCeEEEEeeecCCCccceeec---CccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCce
Confidence 998888899999999999999998986 36889999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCC
Q psy3765 162 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241 (592)
Q Consensus 162 ~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~G 241 (592)
+|++++||||++||++|++.+.++||++|+|+|+..|.++++.++++||||+++|+||||++||+||||+||||+++++|
T Consensus 200 ~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G 279 (415)
T TIGR00767 200 ELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASG 279 (415)
T ss_pred EEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCC
Q psy3765 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNK 321 (592)
Q Consensus 242 e~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~ 321 (592)
|+|++|||+++|+.|++|+||||+++++||||+|+|+|+||||+|+|||+|++++|+||||+|||+||++|||||||+++
T Consensus 280 ~~~s~G~~~~~~~~~~~~~~~a~~~~~~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~ 359 (415)
T TIGR00767 280 KVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKK 359 (415)
T ss_pred CCCCCCcChhhhcccHHHHhhcCCCCCCcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCCcCccc
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhc
Q psy3765 322 SGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDA 375 (592)
Q Consensus 322 S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~ 375 (592)
|+||+++++++++|++.++++|++|+.|++.+.|..++.....+++|+++|...
T Consensus 360 S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 413 (415)
T TIGR00767 360 SGTRKEELLLTPEELQKIWVLRKIISPMDSIEAMEFLISKLKKTKTNEEFLESM 413 (415)
T ss_pred ccccchhhcCCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999853
No 6
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-85 Score=691.93 Aligned_cols=347 Identities=25% Similarity=0.264 Sum_probs=312.3
Q ss_pred CCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCC
Q psy3765 19 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPL 98 (592)
Q Consensus 19 dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi 98 (592)
+.+-||-+....+--++.+.- .+ +++.+++++||.|+|||+|+.| +|+||+++.....+.+++. .||
T Consensus 69 ~~~~~L~p~~~~~gv~~g~~V-~~-~~~~~~v~~g~~lLGRVld~~G----------~plDg~~~~~~~~~~~l~~-~pp 135 (441)
T COG1157 69 EERVLLMPFEPVEGVSPGAEV-VP-TGRPLSVPVGDALLGRVLDGLG----------RPLDGGGLPDGTERRPLDA-PPP 135 (441)
T ss_pred CCeEEEeccCccccCCCCCEE-Ee-cCCccccccChhhhhhhhccCC----------CcCcCCCCCCCcccccccC-CCC
Confidence 455666555444444445444 33 5899999999999999999999 5889977766666677877 599
Q ss_pred CcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHH
Q psy3765 99 HPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178 (592)
Q Consensus 99 ~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~ 178 (592)
+|+.|.++++ ++.||||+||.|+|||+|||+||||++|+||||||.||+++..+ |+ +|+++||||+|||.||
T Consensus 136 ~pm~R~~I~~----~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLLgMiar~t~a---Dv-~ViaLIGERGREVrEF 207 (441)
T COG1157 136 NPLKRRPIEE----PLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNTEA---DV-NVIALIGERGREVREF 207 (441)
T ss_pred Cchhcccccc----cccccceeeecccccccCceeEEEecCCCcHHHHHHHHhccccC---CE-EEEEEeeccchhHHHH
Confidence 9999999999 89999999999999999999999999999999999999985332 43 4568999999999999
Q ss_pred Hhhc-------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCC
Q psy3765 179 QRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDS 250 (592)
Q Consensus 179 ~~~~-------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~ 250 (592)
+++. |+++|++|||+||..|++++++|++|||||||||+|||++|||+||||+|+|||+++.||+|. +||||
T Consensus 208 IE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYpp 287 (441)
T COG1157 208 IEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPP 287 (441)
T ss_pred HHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCc
Confidence 9976 799999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred cccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCC
Q psy3765 251 NALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELL 330 (592)
Q Consensus 251 ~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~ 330 (592)
++|+.+++|+||||+. +.||||+|||||+| |||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+
T Consensus 288 SVF~~LP~LlERaG~~-~~GsITafYTVLve-GDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i 365 (441)
T COG1157 288 SVFSELPRLLERAGNG-DKGSITAFYTVLVE-GDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQI 365 (441)
T ss_pred hHHHHhHHHHhhcCCC-CCCcEEEEEEEEee-cCCCCCchhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHhhhc
Confidence 9999999999999996 79999999999999 799999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 331 IQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 331 ~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
++++|++.+.++|++|+.|++.++++++++|..+++.+ ....+..-..+.|++|...+
T Consensus 366 ~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~~G~D~~~D~Ai~~~p~i~~fL~Q~~~e 424 (441)
T COG1157 366 VSEEHRKAARRLRQLLSRYEENEDLIRIGAYQKGSDPELDKAIKLYPKIEQFLKQGIDE 424 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHHhhHHHHHHHcCCccc
Confidence 99999999999999999999999999999999998876 44555666777888886543
No 7
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=9e-82 Score=679.75 Aligned_cols=345 Identities=15% Similarity=0.184 Sum_probs=318.8
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
...|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.++.+ .|++|.+|.++++ +++|
T Consensus 61 G~~V~~-tg~~~~VpVg~~lLGRVlD~~G----------~PiD~~~~~~~~~~~~i~~-~ap~~~~R~~i~e----~L~T 124 (449)
T TIGR03305 61 GMPVRD-SGGPLKAPVGKPTLSRMFDVFG----------NTIDRREPPKDVEWRSVHQ-APPTLTRRSSKSE----VFET 124 (449)
T ss_pred CCEEEe-cCCceEEEcChhhcCCEEccCc----------cccCCCCCCCCccccchhc-CCCCchhcccCCc----cccc
Confidence 345556 7899999999999999999999 5788887654455667877 6999999999999 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
|||+||+|+|||||||++|||++|+|||+|+.+|++++.++|.++ |||++||||++||+||++++ |+++|++
T Consensus 125 GIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v-~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ 203 (449)
T TIGR03305 125 GIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGV-SIFCGIGERCREGEELYREMKEAGVLDNTVMVFG 203 (449)
T ss_pred CceeeccccccccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCE-EEEEEeccCcHHHHHHHHHHhhccccceEEEEEe
Confidence 999999999999999999999999999999999999987666665 78999999999999999998 6899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE 267 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~ 267 (592)
|+|+||.+|++++++|+|+|||||+ +|+||||++||+||||+|+||||+++||+|+ +||||++|+.+++++|||++.
T Consensus 204 ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~- 282 (449)
T TIGR03305 204 QMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT- 282 (449)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCC-
Confidence 9999999999999999999999998 9999999999999999999999999999996 799999999999999999996
Q ss_pred CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCcccc-CCCCCHHHHHHHHHHHHHH
Q psy3765 268 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE-ELLIQDDKLQKIWVLRKLL 346 (592)
Q Consensus 268 ~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~-~~~~~~~~~~~~~~lr~~l 346 (592)
++||||+|+|++++ +||++|||++++++|+||||+|||+||++||||||||+.|+||++ +.+++++|++.++++|++|
T Consensus 283 ~~GSIT~i~~V~~~-~dD~~dPi~d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~~~~l 361 (449)
T TIGR03305 283 SDGAITSIQAVYVP-ADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTL 361 (449)
T ss_pred CCcCeeEEEEEEcc-CCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 69999999999887 689999999999999999999999999999999999999999999 7888999999999999999
Q ss_pred hccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHH
Q psy3765 347 YSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQEL 402 (592)
Q Consensus 347 ~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeL 402 (592)
++|++++++++++||+++++.++..+......+.|+.|+.|+ .|.+|+++++-.
T Consensus 362 ~~y~e~~~li~~~g~~~l~~~~~~~i~~~~~i~~fL~Q~~~~--~e~~t~~~g~~v 415 (449)
T TIGR03305 362 AQYEELKDIIAMLGLEQLSREDRRVVNRARRLERFLTQPFFT--TEQFTGMKGKTV 415 (449)
T ss_pred HHHHHHHHHHHhhCCccCCHHHHHHHHHHHHHHHHhCCCCcc--cccccCCCCcee
Confidence 999999999999999999999988888555558899998754 588999876654
No 8
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=1.4e-81 Score=678.15 Aligned_cols=331 Identities=16% Similarity=0.196 Sum_probs=309.1
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
.-|.+ +++.+++++|+.++|||+|+.| +|+|+.++.....+++++. .|++|.+|.++++ +++||
T Consensus 67 ~~V~~-t~~~~~i~vg~~lLGRViD~~G----------~pid~~~~~~~~~~~pi~~-~~p~~~~R~~~~e----~l~TG 130 (461)
T TIGR01039 67 LEVID-TGAPISVPVGKETLGRIFNVLG----------EPIDEKGPIPAKERWPIHR-KAPSFEEQSTKVE----ILETG 130 (461)
T ss_pred CEEEe-CCCceEEEcChhhcCCEEccCC----------cccCCCCCCCCCccccccc-CCCChhHcCCccc----ccccC
Confidence 34445 6899999999999999999999 5788887655555677877 5999999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeC
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAST 190 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t 190 (592)
||+||+|+|||||||++|||++|+|||+|++||++++.++++++ +||++||||++||+||++++ |+++|+||
T Consensus 131 iraID~l~pig~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v-~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~at 209 (461)
T TIGR01039 131 IKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGY-SVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQ 209 (461)
T ss_pred ceeecccCCcccCCEEEeecCCCCChHHHHHHHHHHHHhcCCCe-EEEEEecCCchHHHHHHHHHHhcCCcceeEEEEEC
Confidence 99999999999999999999999999999999999998877665 88999999999999999998 69999999
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
+|+||.+|++++++|+++|||||+ +|+||||++||+||||+|+|||++++||+|+ +||||++|+.+++|+|||++. +
T Consensus 210 sd~p~~~R~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~-~ 288 (461)
T TIGR01039 210 MNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITST-K 288 (461)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCC-C
Confidence 999999999999999999999998 8999999999999999999999999999996 799999999999999999985 6
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCcccc-CCCCCHHHHHHHHHHHHHHh
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE-ELLIQDDKLQKIWVLRKLLY 347 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~-~~~~~~~~~~~~~~lr~~l~ 347 (592)
+||||+|+|++++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||++ +.+++++|+++++++|++|+
T Consensus 289 ~GSITai~tVl~~-gdD~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~h~~~a~~~r~~la 367 (461)
T TIGR01039 289 TGSITSVQAVYVP-ADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQ 367 (461)
T ss_pred CCceeEEEEEEcc-CCCCCCccHHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCCccCCHHHHHHHHHHHHHHH
Confidence 9999999999987 689999999999999999999999999999999999999999999 88899999999999999999
Q ss_pred ccccHHHHHhccccccCChhhhHHHhhccchhHHHhhccc
Q psy3765 348 SLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTI 387 (592)
Q Consensus 348 ~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f 387 (592)
+|+++++|++++||+++++.++..++.....+.|+.|+.|
T Consensus 368 ~y~e~~~li~i~g~~~lsd~~~~~l~~~~~i~~fL~Q~~~ 407 (461)
T TIGR01039 368 RYKELQDIIAILGMDELSEEDKLTVERARRIQRFLSQPFF 407 (461)
T ss_pred hhhHHHHHHHHhCCccCCHHHHHHHHhHHHHHHHhCCCCc
Confidence 9999999999999999999999999966666789888874
No 9
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=3.6e-81 Score=678.05 Aligned_cols=331 Identities=18% Similarity=0.224 Sum_probs=309.5
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
..|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....++++++ .|++|.+|.++++ |++||
T Consensus 67 ~~V~~-tg~~~~v~vg~~llGRVid~~G----------~plD~~~~~~~~~~~~i~~-~~p~~~~R~~~~e----~l~TG 130 (461)
T PRK12597 67 DEVRN-TGGPIEVPVGEAVLGRLLDVLG----------EPLDGGPPLPAEERRPIHS-TIPPLAEQDTSTE----ILETG 130 (461)
T ss_pred CEEEe-CCCceEEEcChhhcCCEEeecc----------ccccCCCCCCCcceeeccC-CCcChhhcCCcCc----ceecC
Confidence 34555 6899999999999999999999 5788887655556678877 5899999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeC
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAST 190 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t 190 (592)
||+||+|+|||||||++|||++|+|||+|+.||++++.++|.++ +||++||||++||+||++++ |+++|++|
T Consensus 131 ir~ID~l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv-~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~at 209 (461)
T PRK12597 131 IKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGS-SVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQ 209 (461)
T ss_pred CeeecccCccccCCEEEeecCCCCChhHHHHHHHHHHHhhCCCE-EEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecC
Confidence 99999999999999999999999999999999999999887886 78999999999999999988 68999999
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHc-CCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVEM-KKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~~-G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
+|+||.+|++++++|+++|||||++ |+||||++||+||||+|+||||+++||+|+ +||||++|+.+++|+|||++. +
T Consensus 210 sd~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~-~ 288 (461)
T PRK12597 210 MNEPPGARMRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIAST-K 288 (461)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCC-C
Confidence 9999999999999999999999997 999999999999999999999999999996 799999999999999999985 6
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCcccc-CCCCCHHHHHHHHHHHHHHh
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE-ELLIQDDKLQKIWVLRKLLY 347 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~-~~~~~~~~~~~~~~lr~~l~ 347 (592)
+||||+|+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||++ +.+++++|++.++++|++|+
T Consensus 289 ~GSIT~i~tVl~~-~dD~~dPI~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~r~~la 367 (461)
T PRK12597 289 NGSITSIQAVYVP-ADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVGERHYDAAIEVKRILQ 367 (461)
T ss_pred CccccEEEEEEec-CCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHH
Confidence 8999999999998 689999999999999999999999999999999999999999998 77899999999999999999
Q ss_pred ccccHHHHHhccccccCChhhhHHHhhccchhHHHhhccc
Q psy3765 348 SLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTI 387 (592)
Q Consensus 348 ~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f 387 (592)
+|+++++|++++||+++++.++..++.....+.|+.|+.|
T Consensus 368 ~y~e~e~li~i~gy~~l~~~~d~~i~~~~~i~~fL~Q~~~ 407 (461)
T PRK12597 368 RYKELEDVIAILGIDELSAEDKIIVKRARQLQRFLTQPFF 407 (461)
T ss_pred hhhhHHHHHHHcCCccCCHHHHHHHHhHHHHHHHhCCCcc
Confidence 9999999999999988999999999966666789888874
No 10
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=5.9e-81 Score=674.89 Aligned_cols=331 Identities=16% Similarity=0.207 Sum_probs=309.4
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
..|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....++++.. +|++|.+|.++++ |+.||
T Consensus 68 ~~V~~-tg~~~~v~vg~~lLGRViD~~G----------~pld~~~~~~~~~~~pi~~-~~~~~~~R~~~~~----~l~TG 131 (463)
T PRK09280 68 MEVID-TGAPISVPVGKATLGRIFNVLG----------EPIDEKGPIGAEERWPIHR-KAPSFEELSTKTE----ILETG 131 (463)
T ss_pred CEEEe-CCCceEEEcChhhcCCEEeeec----------cccCCCCCcCccceecccC-CCCChHHhCCccc----eeccC
Confidence 44555 6899999999999999999999 5788877655556778877 5999999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeC
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAST 190 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t 190 (592)
||+||+|+|||||||++|||++|+|||+|++||++++.++++++ +||++||||++||+||++++ ||+||++|
T Consensus 132 iraID~l~pigkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v-~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~at 210 (463)
T PRK09280 132 IKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGY-SVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQ 210 (463)
T ss_pred CeeecccCCcccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCE-EEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEEC
Confidence 99999999999999999999999999999999999998877665 88999999999999999988 69999999
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
+|+||.+|++++++|+++|||||+ +|+||||++||+||||+|+|||++++||+|+ +||||++|+.+++|+|||++. +
T Consensus 211 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~-~ 289 (463)
T PRK09280 211 MNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST-K 289 (463)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCC-C
Confidence 999999999999999999999999 9999999999999999999999999999996 799999999999999999985 6
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCcccc-CCCCCHHHHHHHHHHHHHHh
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE-ELLIQDDKLQKIWVLRKLLY 347 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~-~~~~~~~~~~~~~~lr~~l~ 347 (592)
+||||+|+||+++ |||++|||+|++++|+||||+|||+||++||||||||+.|+||++ +.+++++|++.++++|++|+
T Consensus 290 ~GSITai~tVl~~-gdD~~dPI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~~a~~~r~~la 368 (463)
T PRK09280 290 KGSITSVQAVYVP-ADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVGEEHYDVAREVQQILQ 368 (463)
T ss_pred CCceeEEEEEECc-CCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHH
Confidence 9999999999987 689999999999999999999999999999999999999999999 78899999999999999999
Q ss_pred ccccHHHHHhccccccCChhhhHHHhhccchhHHHhhccc
Q psy3765 348 SLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTI 387 (592)
Q Consensus 348 ~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f 387 (592)
+|+++++|++++||+++++.++..++.....+.|+.|+.|
T Consensus 369 ~y~e~e~li~i~gy~~~sd~~d~ai~~~~~i~~fL~Q~~~ 408 (463)
T PRK09280 369 RYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFF 408 (463)
T ss_pred HhHHHHHHHHhhCCccCCHHHHHHHHhhHHHHHhccCCcc
Confidence 9999999999999999999999999966666789888874
No 11
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=1.1e-80 Score=675.04 Aligned_cols=331 Identities=15% Similarity=0.184 Sum_probs=306.8
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
.-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.+++. .|++|.+|.++++ +++||
T Consensus 85 ~~V~~-tg~~~~vpvg~~lLGRVid~~G----------~piDg~~~~~~~~~~pi~~-~~p~~~~R~~i~e----~L~TG 148 (494)
T CHL00060 85 MEVID-TGAPLSVPVGGATLGRIFNVLG----------EPVDNLGPVDTRTTSPIHR-SAPAFIQLDTKLS----IFETG 148 (494)
T ss_pred CEEEe-CCCcceeecchhhcCCEEeecC----------cccCCCCCCCCCccccccC-CCcCchhcccccc----eeecC
Confidence 34445 6899999999999999999999 5788887655555667877 5999999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc--------------c
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV--------------R 183 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~--------------~ 183 (592)
||+||+|+|||||||++|||++|+|||+|+.||++++.+.+.++ |||++||||++||.||++++ |
T Consensus 149 IraID~l~pigkGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv-~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~r 227 (494)
T CHL00060 149 IKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGV-SVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 227 (494)
T ss_pred ceeeeccCCcccCCEEeeecCCCCChhHHHHHHHHHHHHhcCCe-EEEEEeccCchHHHHHHHHHHhcCccccCcccccc
Confidence 99999999999999999999999999999999999966555665 89999999999999999976 3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCC-cEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHh
Q psy3765 184 GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK-DVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFG 261 (592)
Q Consensus 184 ~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~-dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~e 261 (592)
+++|++|+|+||.+|++++++|+++|||||++|+ ||||++||+||||+|+||||+++||+|+ +|||+++|+.+++|+|
T Consensus 228 svvv~atsd~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlE 307 (494)
T CHL00060 228 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQE 307 (494)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHH
Confidence 6999999999999999999999999999999886 9999999999999999999999999996 7999999999999999
Q ss_pred hcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccc-cCCCCCHHHHHHHH
Q psy3765 262 AARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRR-EELLIQDDKLQKIW 340 (592)
Q Consensus 262 rA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~-~~~~~~~~~~~~~~ 340 (592)
|||+. .+||||+|+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+ ++.+++++|++.++
T Consensus 308 RaG~~-~~GSITai~tVl~~-gdD~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~v~~~h~~~a~ 385 (494)
T CHL00060 308 RITST-KEGSITSIQAVYVP-ADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQ 385 (494)
T ss_pred hccCC-CCCCeeEEEEEECC-CCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhcccccCCHHHHHHHH
Confidence 99997 58999999999987 68999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhccc
Q psy3765 341 VLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTI 387 (592)
Q Consensus 341 ~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f 387 (592)
++|++|++|++++++++++||++++++++..++.....+.|+.|+.|
T Consensus 386 ~~r~~la~y~e~e~li~~~g~~~ls~~~~~~i~~~~~i~~fL~Q~~f 432 (494)
T CHL00060 386 RVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFF 432 (494)
T ss_pred HHHHHHHHhHHHHHHHHHhCcccCCHHHHHHHHhHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999955555899999865
No 12
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=7.3e-81 Score=684.93 Aligned_cols=312 Identities=20% Similarity=0.184 Sum_probs=290.7
Q ss_pred CccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 89 RTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 89 r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
++|+.. |+++.+|.++++ |++||+|+||+|+|||||||++|+|++|+|||+|++||+++. +.++ |||++|
T Consensus 187 ~wPvr~--p~p~~~R~~~~~----pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT~l~~~lak~~---~adi-vVyvg~ 256 (578)
T TIGR01043 187 KWPVRI--PRPYKEKLPPEV----PLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQHQLAKWS---DADI-VVYIGC 256 (578)
T ss_pred eccccc--CCCchhcCCCCc----chhccchhhhccccccCCCEEEEecCCCCCHHHHHHHHHhcC---CCCE-EEEEEe
Confidence 345543 677888888888 899999999999999999999999999999999999999853 3454 789999
Q ss_pred ccchhHHHHHHhhc--------------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHh
Q psy3765 169 DERPEEVTEMQRSV--------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYN 234 (592)
Q Consensus 169 GeR~~Ev~e~~~~~--------------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~r 234 (592)
|||++||+||++++ ||++|+||||+|+.+|++++|+|+|+||||||||+||++|+||+||||+|+|
T Consensus 257 GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~DS~sR~AeAlR 336 (578)
T TIGR01043 257 GERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEAMR 336 (578)
T ss_pred ccChHHHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChhHHHHHHH
Confidence 99999999999998 6999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCC-CCCCCcccccchHHHhhccccc------CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechH
Q psy3765 235 TVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE------EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307 (592)
Q Consensus 235 eis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~------~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~ 307 (592)
|||+++||+|. +|||+|+++++++||||||+++ ++||||+|+||+++ |||++|||++++++|+||||+|||+
T Consensus 337 EIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~~-ggD~sdPVt~~t~~i~dg~i~Ldr~ 415 (578)
T TIGR01043 337 EISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPP-GGDFSEPVTQNTLRIVKVFWALDAD 415 (578)
T ss_pred HHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEECC-CCCCCccHHHHHHHHhCcEEEeCHH
Confidence 99999999996 7999999999999999999984 26999999987755 8999999999999999999999999
Q ss_pred hHhcCCCCCCcCCCCCccccCCC-------CCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchh
Q psy3765 308 LAEKRVYPAINLNKSGTRREELL-------IQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPL 379 (592)
Q Consensus 308 La~~gifPAID~l~S~SR~~~~~-------~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e 379 (592)
||++||||||||+.|+||+++.+ ++++|.+.+++++++|++|+++++++++.|.+.+++.|+..|+ .+.+++
T Consensus 416 LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~lvG~d~L~~~d~~il~~a~~i~e 495 (578)
T TIGR01043 416 LAQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQLVGPDALPERQKLILEVARMIRE 495 (578)
T ss_pred HHhcCCCCCcCcccchhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhHHHHH
Confidence 99999999999999999999888 8999999999999999999999999999999999999999999 888999
Q ss_pred HHHhhcccccccccchhhhhHHHHHHHHHhhcc
Q psy3765 380 VLAETQTIDLEVNSVKRLRKQELMFAIFKKKTK 412 (592)
Q Consensus 380 ~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~ 412 (592)
.|++|+.|+ .+|.+|++.||..+++.+....+
T Consensus 496 ~FLqQ~~~~-~~d~~~~~~k~~~~L~~i~~~~~ 527 (578)
T TIGR01043 496 AFLQQNAFD-PVDTYCPPQKQYRILRAIMNFYD 527 (578)
T ss_pred hhCCCCCCC-CccCCCCHHHHHHHHHHHHHHHH
Confidence 999999998 99999999999998877765544
No 13
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.5e-79 Score=665.42 Aligned_cols=351 Identities=16% Similarity=0.153 Sum_probs=313.2
Q ss_pred eeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCc
Q psy3765 21 FGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHP 100 (592)
Q Consensus 21 ~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p 100 (592)
.-++-..+..---+..+.-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.++++ .|++|
T Consensus 48 ~~~l~~~~~t~gi~~g~~~V~~-tg~~~~v~vg~~lLGRViD~~G----------~plD~~~~~~~~~~~~i~~-~~~~~ 115 (458)
T TIGR01041 48 LAVVQVFEGTTGLDPTGTKVRF-TGETLKLPVSEDMLGRILNGSG----------EPIDGGPEIVPDERRDING-APINP 115 (458)
T ss_pred EEEEEEecCCcCcCCCCcEEEE-CCCceEEEcChhhccCEEccCC----------cccCCCCCCCccceeeccC-CCCCh
Confidence 3444443222223344555666 7899999999999999999999 5788877655556678887 59999
Q ss_pred ccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhc--CCCeEEEEEEeccchhHHHHH
Q psy3765 101 KKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTN--HSEAIMIVMLIDERPEEVTEM 178 (592)
Q Consensus 101 ~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~--~~~~~~I~~lIGeR~~Ev~e~ 178 (592)
.+|.++++ |++||||+||+|+|||||||++|||++|+|||+|+.||+++.+.+ +.++.|||++||||++||.||
T Consensus 116 ~~R~~~~~----~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~ef 191 (458)
T TIGR01041 116 YAREYPEE----FIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFF 191 (458)
T ss_pred hhcCCCCC----cCCCCeEEEEccCccccCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHH
Confidence 99999998 899999999999999999999999999999999999999987643 356779999999999999999
Q ss_pred Hhhc-------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHH-HcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCC
Q psy3765 179 QRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLV-EMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVD 249 (592)
Q Consensus 179 ~~~~-------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r-~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp 249 (592)
++++ ||++|++|+|+||.+|++++++|+|+||||| ++|+||||++||+||||+|+||||+++||+|+ +|||
T Consensus 192 i~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP 271 (458)
T TIGR01041 192 MKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYP 271 (458)
T ss_pred HHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcC
Confidence 9998 6999999999999999999999999999999 79999999999999999999999999999996 7999
Q ss_pred CcccccchHHHhhccccc-CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccC
Q psy3765 250 SNALQRPKRFFGAARNIE-EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREE 328 (592)
Q Consensus 250 ~~l~~~~~~~~erA~~~~-~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~ 328 (592)
|++|+.+++|+||||++. ++||||+|+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+++
T Consensus 272 ~svfs~l~~LlERaG~~~~~~GSITai~tV~~~-gdD~~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~ 350 (458)
T TIGR01041 272 GYMYTDLATIYERAGRVKGKKGSITQMPILTMP-GDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMK 350 (458)
T ss_pred ccHHHHhHHHHHhcccCCCCCcceEEEEEEEcC-CCCCCCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhccc
Confidence 999999999999999986 48999999999887 6899999999999999999999999999999999999999999998
Q ss_pred C-----CCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhcccc
Q psy3765 329 L-----LIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTID 388 (592)
Q Consensus 329 ~-----~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~ 388 (592)
. +++++|.+.+++++..|+++++++++.++.|.+++++.++..+. .+.+.++|++|..++
T Consensus 351 ~~ig~~~~~~~~~~~a~~l~~~y~~~~~L~~i~~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~ 416 (458)
T TIGR01041 351 DGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVGEEALSERDRKYLKFADLFERRFVRQGRNE 416 (458)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 7 78899999999999999999999999888887888888888888 444468888887654
No 14
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=4.4e-80 Score=676.35 Aligned_cols=312 Identities=17% Similarity=0.156 Sum_probs=291.9
Q ss_pred CccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 89 RTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 89 r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
++++.. |+++.+|.++++ |+.||+|+||+|+|||||||++|+|++|||||+|++||+++.+ .|+ +||++|
T Consensus 191 ~wPvr~--p~p~~~R~~~~~----PL~TG~RvID~lfPi~kGqr~~I~gg~G~GKT~l~~~lak~s~---aDv-iVyvg~ 260 (591)
T TIGR01042 191 TWPVRS--PRPVTEKLPANT----PLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSN---SDA-IVYVGC 260 (591)
T ss_pred eeeccc--CCChhhccCCCC----ccccchhhhhhccchhcCCeEEEEcCCCcCHHHHHHHHHhccC---cCE-EEEEEE
Confidence 456664 778888988888 8999999999999999999999999999999999999988543 466 789999
Q ss_pred ccchhHHHHHHhhc----------------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 169 DERPEEVTEMQRSV----------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 169 GeR~~Ev~e~~~~~----------------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
|||++||+||+++| ||++|+||||+|+.+|++++|+|+|+||||||+|+||++++||+||||+|
T Consensus 261 GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEYfRD~G~~Vll~~DS~tR~AeA 340 (591)
T TIGR01042 261 GERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEA 340 (591)
T ss_pred eechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHH
Confidence 99999999999983 68999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCC-CCCCCcccccchHHHhhcccc------cCCcceeeEEEEEeecCCCCCcccccccccccCeEEEec
Q psy3765 233 YNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNI------EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305 (592)
Q Consensus 233 ~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~------~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ld 305 (592)
+||||+++||+|. +|||+|+++++++||||||++ +++||||+|+||+.+ |+|++|||++++++++|+||+||
T Consensus 341 lREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i~aVs~~-ggD~sePVt~~t~~i~~~f~~Ld 419 (591)
T TIGR01042 341 LREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPP-GGDFSDPVTSATLGIVQVFWGLD 419 (591)
T ss_pred HHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEEEEEECC-CCCCCCchHHHHHHHhcceeeeC
Confidence 9999999999996 799999999999999999998 358999999997765 78999999999999999999999
Q ss_pred hHhHhcCCCCCCcCCCCCccccCCCC------CHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccch
Q psy3765 306 RRLAEKRVYPAINLNKSGTRREELLI------QDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMP 378 (592)
Q Consensus 306 r~La~~gifPAID~l~S~SR~~~~~~------~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~ 378 (592)
|+||++||||||||+.|+||+++.+. +++|.+.+++++++|++|++++++++|+||+.+.+.|+..++ ++.++
T Consensus 420 r~LA~~ghyPAId~l~S~Sr~~~~l~~~~~~~~~~~~~~~~~~~~lL~~~~el~eiv~l~g~~~l~~~d~~i~~~a~~i~ 499 (591)
T TIGR01042 420 KKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQLVGKDALAETDKITLEVAKLIK 499 (591)
T ss_pred HHHHhCCCCCCcCCchhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999888 899999999999999999999999999999999888888888 89999
Q ss_pred hHHHhhcccccccccchhhhhHHHHHHHHHhhcc
Q psy3765 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTK 412 (592)
Q Consensus 379 e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~ 412 (592)
+.|++|++|+ .+|.+|++.||..+++.+....+
T Consensus 500 e~FLqQ~a~~-~~d~~~~~~kt~~~L~~i~~~~~ 532 (591)
T TIGR01042 500 EDFLQQNGYT-PYDRFCPFYKTVGMMRNMIAFYD 532 (591)
T ss_pred HHhCCCCCCC-CccccCCHHHHHHHHHHHHHHHH
Confidence 9999999998 89999999999998877765544
No 15
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.4e-79 Score=664.05 Aligned_cols=335 Identities=16% Similarity=0.146 Sum_probs=308.6
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
+..|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.++++ .|++|.+|.++++ |++|
T Consensus 66 G~~V~~-tg~~~~V~vg~~lLGRVvD~~G----------~PlD~~~~i~~~~~~~i~~-~ap~~l~R~~i~e----pl~T 129 (460)
T PRK04196 66 DTKVRF-TGEPLKLPVSEDMLGRIFDGLG----------RPIDGGPEIIPEKRLDING-APINPVAREYPEE----FIQT 129 (460)
T ss_pred CCEEEe-CCCccEEEcCcccccCEECccC----------CCccCCCCCCCCccCcccC-CCCChhhcCCCCc----cccC
Confidence 345666 6899999999999999999999 4788887765556667877 5899999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhc--CCCeEEEEEEeccchhHHHHHHhhc-------cEEEE
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTN--HSEAIMIVMLIDERPEEVTEMQRSV-------RGEVI 187 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~--~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV 187 (592)
|||+||+|+|||||||++|||++|+|||+|+.||+++.+.+ +.++.|||++||||++||.||++++ +|++|
T Consensus 130 Gi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV 209 (460)
T PRK04196 130 GISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVF 209 (460)
T ss_pred CeEEEeccCcccCCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEE
Confidence 99999999999999999999999999999999999987643 4577899999999999999999998 69999
Q ss_pred EeCCCCCHHHHHHHHHhHHHHHHHHH-HcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccc
Q psy3765 188 ASTFDEPAYRHVQVAEMVLEKAKRLV-EMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARN 265 (592)
Q Consensus 188 ~~t~d~~~~~r~~~~~~a~t~AE~~r-~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~ 265 (592)
++|+|+||.+|++++|+|+|+||||| ++|+||||++||+||||+|+||||+++||+|. +|||+++|+.+++|+||||+
T Consensus 210 ~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~ 289 (460)
T PRK04196 210 LNLADDPAIERILTPRMALTAAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGR 289 (460)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhc
Confidence 99999999999999999999999999 79999999999999999999999999999996 79999999999999999999
Q ss_pred cc-CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCC-----HHHHHHH
Q psy3765 266 IE-EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQ-----DDKLQKI 339 (592)
Q Consensus 266 ~~-~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~-----~~~~~~~ 339 (592)
+. ++||||+|+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++ ++|.+.+
T Consensus 290 ~~~~~GSITai~~V~~~-gdD~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~~~~~~~~~a 368 (460)
T PRK04196 290 IKGKKGSITQIPILTMP-DDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHKDVA 368 (460)
T ss_pred CCCCCeeeEEEEEEEcC-CCCCCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCcccCcHHHHHHH
Confidence 85 58999999999887 68999999999999999999999999999999999999999999999888 9999999
Q ss_pred HHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhcccc
Q psy3765 340 WVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTID 388 (592)
Q Consensus 340 ~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~ 388 (592)
.+++..|+++++++++.+..|.+++++.++..+. .+.+.++|++|+.++
T Consensus 369 ~~l~~~y~~~~~l~~~~~~~G~~~l~d~~~~~~~~~~~~~~~fL~Q~~~~ 418 (460)
T PRK04196 369 NQLYAAYARGKDLRELAAIVGEEALSERDRKYLKFADAFEREFVNQGFDE 418 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999998888899899888888 555666898887754
No 16
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=4.5e-79 Score=663.60 Aligned_cols=339 Identities=17% Similarity=0.180 Sum_probs=309.0
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
..|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.+++. .|++|++|.++++ |++||
T Consensus 86 ~~V~~-tg~~~~vpvg~~llGRVvd~lG----------~PiDg~~~~~~~~~~~i~~-~~p~~~~R~~v~e----pl~TG 149 (497)
T TIGR03324 86 DEVER-TGRVMDVPVGDGLLGRVVDPLG----------RPLDGGGPLASSPRLPIER-PAPPIMDRAPVTV----PLQTG 149 (497)
T ss_pred CEEEE-CCCCCeEECCHhhCcCEECCCC----------CCcCCCCCCCCCceeehhc-cCcCccccCCCCc----hhhcC
Confidence 34555 6899999999999999999999 5789887766666778877 5899999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
||+||+|+|||||||++|||++|+|||+| +.+|+++ .+.++.|||++||||++||.+|++++ +|+||++
T Consensus 150 I~aID~l~pigrGQR~~Ifg~~g~GKT~Lal~~I~~q---~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~a 226 (497)
T TIGR03324 150 LKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQ---KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVT 226 (497)
T ss_pred CEEEeccCCcccCCEEEeecCCCCCHHHHHHHHHHHh---cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEe
Confidence 99999999999999999999999999999 4677764 45788899999999999999999998 6899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc-
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE- 267 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~- 267 (592)
|+|+||.+|+++|++|+++|||||++|+||||++|||||||+||||||+++||+|+ +||||++|+.+++|+|||+++.
T Consensus 227 tsd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~ 306 (497)
T TIGR03324 227 EGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNE 306 (497)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999996 7999999999999999999964
Q ss_pred --CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHH
Q psy3765 268 --EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKL 345 (592)
Q Consensus 268 --~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~ 345 (592)
++||||+|+|++++ +||++|||++++++|+||||+|||+||++||||||||+.|+||++..++.++|.+.+.++|+.
T Consensus 307 ~~~~GSITal~~V~~~-~dD~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~lr~~ 385 (497)
T TIGR03324 307 ELGGGSLTALPIIETE-AQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLA 385 (497)
T ss_pred CCCCcceeEEEEEEcC-CCCCCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCccccCHHHHHHHHHHHHH
Confidence 58999999999988 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHHH
Q psy3765 346 LYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELM 403 (592)
Q Consensus 346 l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi 403 (592)
|++|++++++++++.| +++..+..++......+|+.|..++ ..++..|-..
T Consensus 386 la~y~e~e~~~~~G~~--ld~~~~~~i~~~~~i~~fL~Q~~~~-----~~~~~~~~~~ 436 (497)
T TIGR03324 386 YAQFEELETFARFGAR--LDENTRKTIEHGRRIRACLKQTQSS-----PLTVPQQIAI 436 (497)
T ss_pred HHHHHHHHHHHHhhhh--cCHHHHHHHHhHHHHHHHhCCCCCC-----CCCHHHHHHH
Confidence 9999999999999764 7788888888666668898887755 4445555443
No 17
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=3.8e-80 Score=680.16 Aligned_cols=302 Identities=21% Similarity=0.190 Sum_probs=283.6
Q ss_pred ccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHh
Q psy3765 101 KKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180 (592)
Q Consensus 101 ~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~ 180 (592)
.+|.++++ |+.||+|+||+|+||+||||++|+|++|+|||+|++||+++.+ .++ +||++||||++|++||++
T Consensus 202 ~~R~~~~~----pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GKTvl~~~iak~a~---adi-vVyvg~GERg~E~~e~l~ 273 (586)
T PRK04192 202 KEKLPPVE----PLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLAKWAD---ADI-VIYVGCGERGNEMTEVLE 273 (586)
T ss_pred cccCCCCC----ccccCchhhhcccccccCCeEEEecCCCCCHHHHHHHHHhcCC---CCE-EEEEEcCcChHHHHHHHH
Confidence 66777776 8999999999999999999999999999999999999998643 454 789999999999999999
Q ss_pred hc--------------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-
Q psy3765 181 SV--------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT- 245 (592)
Q Consensus 181 ~~--------------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~- 245 (592)
++ ||++|+||||+|+.+|++++|+|+|+||||||||+||++++||+||||+|+||||+++||+|+
T Consensus 274 ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAEYfRd~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~ 353 (586)
T PRK04192 274 EFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGE 353 (586)
T ss_pred HHHhhcccccccccceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHHHhcCCCCcc
Confidence 94 689999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCcccccchHHHhhccccc----CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCC
Q psy3765 246 GGVDSNALQRPKRFFGAARNIE----EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNK 321 (592)
Q Consensus 246 ~Gyp~~l~~~~~~~~erA~~~~----~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~ 321 (592)
+|||+|+++++++||||||+++ ++||||+|+||+ ++|||++|||++++++|+|+||+|||+||++||||||||+.
T Consensus 354 eGYP~yL~S~La~~yERAG~v~~~~~~~GSIT~i~aVs-~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~ 432 (586)
T PRK04192 354 EGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAVS-PPGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLT 432 (586)
T ss_pred CCcCccHHHHHHHHHHhhcccccCCCCCcceEEEEEEE-CCCCCCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCcc
Confidence 7999999999999999999985 489999999865 56899999999999999999999999999999999999999
Q ss_pred CCccccCCCCC-------HHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhccccccccc
Q psy3765 322 SGTRREELLIQ-------DDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTIDLEVNS 393 (592)
Q Consensus 322 S~SR~~~~~~~-------~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~~~Id~ 393 (592)
|+||+++.+.+ ++|.+.+++++++|++|+++++|++++|++.++++++..|+ .+.+++.|++|++|+ .+|.
T Consensus 433 S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~el~eiv~lvG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~-~~d~ 511 (586)
T PRK04192 433 SYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQEIVRLVGPDALPEEDRLILEVARLIREDFLQQNAFD-PVDT 511 (586)
T ss_pred chhhhhhcccchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHhhcCCCCCC-Cccc
Confidence 99999987754 99999999999999999999999999999999999999999 888888999999998 9999
Q ss_pred chhhhhHHHHHHHHHhhcc
Q psy3765 394 VKRLRKQELMFAIFKKKTK 412 (592)
Q Consensus 394 ~~~lkKqeLi~~Ilk~~~~ 412 (592)
+|++.||..+++++....+
T Consensus 512 ~~~l~k~~~~l~~i~~~~~ 530 (586)
T PRK04192 512 YCPPEKQYEMLKLILTFYD 530 (586)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 9999999999888775544
No 18
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=1e-78 Score=665.20 Aligned_cols=340 Identities=17% Similarity=0.198 Sum_probs=309.4
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
...|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.+++. .|++|.+|.++++ |++|
T Consensus 85 g~~V~~-~~~~~~v~vg~~llGrv~d~~G----------~pid~~~~~~~~~~~~i~~-~~p~~~~R~~~~~----~l~T 148 (502)
T PRK09281 85 GDTVKR-TGRILEVPVGEALLGRVVNPLG----------QPIDGKGPIEATETRPVER-KAPGVIDRKSVHE----PLQT 148 (502)
T ss_pred CCeeee-cCCceEEecCHHhcCCEEccCC----------CCcCCCCCCCCCceecccC-CCcCccccCCccc----eeec
Confidence 345556 7899999999999999999999 5788887766666677877 5899999999999 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEE
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIA 188 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~ 188 (592)
|||+||+|+|||||||++|||++|+|||+| +.+|+++ .+.++.|||++||||++||.+|++++ +|+||+
T Consensus 149 Gi~~ID~l~pigrGQr~~Ifg~~g~GKt~lal~~i~~~---~~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~ 225 (502)
T PRK09281 149 GIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQ---KGKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVA 225 (502)
T ss_pred CCeeeecccccccCcEEEeecCCCCCchHHHHHHHHHh---cCCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEE
Confidence 999999999999999999999999999999 5666554 46789999999999999999999998 699999
Q ss_pred eCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc
Q psy3765 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE 267 (592)
Q Consensus 189 ~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~ 267 (592)
+|+|+||.+|+++|++|+|+|||||++|+||||++|||||||+||||||+++||+|+ +||||++|+.+++++|||+++.
T Consensus 226 atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~ 305 (502)
T PRK09281 226 ATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 305 (502)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999996 7999999999999999999984
Q ss_pred ---CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHH
Q psy3765 268 ---EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRK 344 (592)
Q Consensus 268 ---~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~ 344 (592)
++||||+|++++++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+++..+.++|.+++.++|+
T Consensus 306 ~~~~~GSITal~~V~~~-~dD~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~~~~~~~a~~lr~ 384 (502)
T PRK09281 306 DELGGGSLTALPIIETQ-AGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQIKAMKKVAGTLRL 384 (502)
T ss_pred CCCCCccEEEEEEEECC-CCCCCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCccCCHHHHHHHHHHHH
Confidence 58999999998877 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHHH
Q psy3765 345 LLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELM 403 (592)
Q Consensus 345 ~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi 403 (592)
.|++|++++++++++ ..+++.++..|+.....++|+.|..++ ..++.+|-.+
T Consensus 385 ~la~y~e~~~l~~~g--~~l~~~~~~~l~~~~~i~~fL~Q~~~~-----~~~~~~~~~~ 436 (502)
T PRK09281 385 DLAQYRELEAFAQFG--SDLDEATRAQLERGQRLVELLKQPQYS-----PLPVEEQVVI 436 (502)
T ss_pred HHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhCCCCCC-----CCCHHHHHHH
Confidence 999999999999986 568888899999655556898888755 3455655544
No 19
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=3.1e-80 Score=633.69 Aligned_cols=222 Identities=64% Similarity=1.011 Sum_probs=216.0
Q ss_pred hHHHhhccchhHHHhhcccccccccchhhhhHHHHHHHHHhhccccceeeeceeeeeecCCeeEeeCCCCCCCCCCCCcc
Q psy3765 369 KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448 (592)
Q Consensus 369 k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~~~~~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~ 448 (592)
-+.|+.+.+.++...+.. ++++++++++||+++|+|+++++++++.+.++|+|||+||||||||++++||+|+++|||
T Consensus 6 ~~~L~~~~~~~l~~~a~~--~~i~~~~~~~K~dlifailk~~~e~g~~~~~~GvLeil~dGfGFLR~~~~~yl~~~~DiY 83 (422)
T COG1158 6 LTELKNKPLSELLELAEE--LGIENYSRLRKQDLIFAILKAQAEQGEEIFGDGVLEILPDGFGFLRSADSSYLPGPDDIY 83 (422)
T ss_pred HHHHhcCCHHHHHHHHHH--hCCcchhhhhHHHHHHHHHHHHhhcCceEeeeeEEEeccCCcceeecCccccCCCCCceE
Confidence 456888888888888888 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCeeeeeecCCCCCCcccceeeeeEEe----------------------------------------
Q psy3765 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN---------------------------------------- 488 (592)
Q Consensus 449 v~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~v~~in---------------------------------------- 488 (592)
|||||||+|+||+||.|.|+||+|+++|+||+|++|++||
T Consensus 84 vSpSQIRrf~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~~~R~~F~~LTPlyP~erl~LE~~~~~~~ls~Rv 163 (422)
T COG1158 84 VSPSQIRRFNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFENLTPLYPNERLKLERENGSTDLSTRV 163 (422)
T ss_pred ECHHHHhhccCccCCEEeeeecCCCcccceeeeEEEeecCCCCHHHhhccCCcccCCCCCCcceeeeecCCCcccchhHH
Confidence 9999999999999999999999999999999999999998
Q ss_pred ---------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCcEEEecCCCCcc----
Q psy3765 489 ---------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL---- 549 (592)
Q Consensus 489 ---------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~vv~st~D~~~~---- 549 (592)
||||++|||||||.||++|++|||||++|||||||||||||||+|+|.||||+||||+||.
T Consensus 164 iDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~~Hvq 243 (422)
T COG1158 164 IDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPSRHVQ 243 (422)
T ss_pred HhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhhcceEEeecCCCcchhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999993
Q ss_pred -----------------------chHHHHHHHhhccCCCCCCcccCCcCccccCCcccccccccCC
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg~ar~~ 592 (592)
|||||||||||.++|+|||+||||+||+|||+||||||||||+
T Consensus 244 VAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsGGvD~nAL~~PKrFFGAARNI 309 (422)
T COG1158 244 VAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNI 309 (422)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCCCCeecCCcChhhhcCchhhhhhhhcc
Confidence 9999999999999999999999999999999999999999997
No 20
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.6e-78 Score=652.85 Aligned_cols=353 Identities=14% Similarity=0.148 Sum_probs=316.6
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
...|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.++++ .|++|.+|.++++ +++|
T Consensus 64 g~~V~~-t~~~~~v~vg~~lLGRVid~~G----------~piD~~~~~~~~~~~~i~~-~~~~~~~R~~i~e----~l~T 127 (466)
T TIGR01040 64 KTTCEF-TGDILRTPVSEDMLGRVFNGSG----------KPIDKGPPVLAEDYLDING-QPINPYARIYPEE----MIQT 127 (466)
T ss_pred CCEEEE-CCCccEEEcCcccccCEECccc----------cccCCCCCCCCCceeeccC-CCCChhHcCCCCC----eeec
Confidence 455566 6899999999999999999999 5788887655555667877 5999999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHH-----------hcCCCeEEEEEEeccchhHHHHHHhh-c--
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAIT-----------TNHSEAIMIVMLIDERPEEVTEMQRS-V-- 182 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~-----------~~~~~~~~I~~lIGeR~~Ev~e~~~~-~-- 182 (592)
|||+||+|+|||||||++|||++|+|||+|+.||+++.. +++.++.|||++|||| +|+.+|+.. +
T Consensus 128 GI~aID~l~~ig~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~ 206 (466)
T TIGR01040 128 GISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEE 206 (466)
T ss_pred CcEEEeccCccccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999875 3345677999999999 887776654 3
Q ss_pred -----cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHH-HcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCccccc
Q psy3765 183 -----RGEVIASTFDEPAYRHVQVAEMVLEKAKRLV-EMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQR 255 (592)
Q Consensus 183 -----~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r-~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~ 255 (592)
|+++|++|+|+||.+|++++++|+|+||||| ++|+||||++|||||||+|+||||+++||+|+ +||||++|+.
T Consensus 207 ~g~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~ 286 (466)
T TIGR01040 207 NGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTD 286 (466)
T ss_pred cCCcceEEEEEECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHH
Confidence 7999999999999999999999999999999 79999999999999999999999999999996 7999999999
Q ss_pred chHHHhhccccc-CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCC--
Q psy3765 256 PKRFFGAARNIE-EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQ-- 332 (592)
Q Consensus 256 ~~~~~erA~~~~-~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~-- 332 (592)
+++++||||++. ++||||+|+|++++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++
T Consensus 287 l~~L~ERaG~~~~~~GSITai~tV~~~-~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~ 365 (466)
T TIGR01040 287 LATIYERAGRVEGRNGSITQIPILTMP-NDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEG 365 (466)
T ss_pred HHHHhhccccCCCCCcceEEEEEEECC-CCCCCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccC
Confidence 999999999985 58999999999987 68999999999999999999999999999999999999999999999988
Q ss_pred ---HHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhcccccccccchhhhhHHHHHHHHH
Q psy3765 333 ---DDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFK 408 (592)
Q Consensus 333 ---~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk 408 (592)
++|.+.++++.+.|++.+++.++....|.+++++.++..|. ...+.+.|++|+.++ ..+-.+.+.++--+++++.
T Consensus 366 ~~~~~h~~~a~~l~~~y~~~~~L~~ig~y~G~d~l~d~a~~~l~~~~~i~~~FL~Q~~~~-~~~~~~~l~~~w~ll~~~~ 444 (466)
T TIGR01040 366 MTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPYE-NRTIFESLDIAWQLLRIFP 444 (466)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHhccCcCC-CcCHHHHHHHHHHHHHhCC
Confidence 89999999988888888888888888888888888888888 555658899999776 7777777777777666543
No 21
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=2.5e-78 Score=659.89 Aligned_cols=339 Identities=15% Similarity=0.171 Sum_probs=311.4
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
..|.+ +++.+++++|+.++|||+|+.| +|||+.++.....+.+++. .|++|.+|.++++ |++||
T Consensus 86 ~~V~~-tg~~~~vpvg~~llGRVid~lG----------~piDg~~~i~~~~~~~i~~-~ap~~~~R~~v~e----pl~TG 149 (502)
T PRK13343 86 TEVRR-TGRVLEVPVGDGLLGRVIDPLG----------RPLDGGGPLQATARRPLER-PAPAIIERDFVTE----PLQTG 149 (502)
T ss_pred CEeEe-cCCcceeecCHHhcCCEECCCC----------CcccCCCCCCCCceecccC-CCcChhhcCCCCc----ccccC
Confidence 44555 6899999999999999999999 5789988876666778887 5999999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
||+||+|+|||||||++|||++|+|||+| +.+|++ +.+.++.|||++||||++||.+|++++ +|+||++
T Consensus 150 IkaID~l~pigrGQR~~I~g~~g~GKt~Lal~~i~~---~~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~a 226 (502)
T PRK13343 150 IKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIIN---QKDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVA 226 (502)
T ss_pred CceeccccccccCCEEEeeCCCCCCccHHHHHHHHh---hcCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEe
Confidence 99999999999999999999999999999 566665 456789999999999999999999998 6999999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc-
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE- 267 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~- 267 (592)
|+|+||.+|+++|++|+++|||||++|+|||+++|||||||+||||||+++||+|+ +|||+++|+.+++++|||+++.
T Consensus 227 tsd~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~ 306 (502)
T PRK13343 227 EASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSP 306 (502)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999996 7999999999999999999984
Q ss_pred --CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHH
Q psy3765 268 --EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKL 345 (592)
Q Consensus 268 --~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~ 345 (592)
++||||+|+||+++ +||+++||+++++||+||||+|||+||++||||||||+.|+||++..++.++|++.+.++|..
T Consensus 307 ~~~gGSITal~~V~~~-~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~lr~~ 385 (502)
T PRK13343 307 ELGGGSLTALPIIETL-AGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLD 385 (502)
T ss_pred CCCCcceEEEEEEEcC-CCCCCCcchhhhhcccceEEEECHHHHhCCCCCccCCccchhccCccccCHHHHHHHHHHHHH
Confidence 68999999999988 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHHH
Q psy3765 346 LYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELM 403 (592)
Q Consensus 346 l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi 403 (592)
|++|+|++++++++.| +.+..+..++......+|+.|..++ ..++.+|-..
T Consensus 386 la~y~e~e~~~~~G~~--ld~~~~~~i~~~~~i~~~L~Q~~~~-----~~~~~~~~~~ 436 (502)
T PRK13343 386 YAQFLELEAFTRFGGL--LDAGTQKQITRGRRLRELLKQPRFS-----PLSVEEQIAL 436 (502)
T ss_pred HHHHHHHHHHHHHhhh--cCHHHHHHHHHHHHHHHHhcCCCCC-----CCCHHHHHHH
Confidence 9999999999999986 7788888888777777799998866 3455555543
No 22
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=4.7e-78 Score=655.39 Aligned_cols=328 Identities=16% Similarity=0.170 Sum_probs=301.7
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCcccc-----ccCccccCCCCCCcccccccccccC
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELS-----KNRTLFDNLTPLHPKKLLLLERNIE 111 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~-----~~r~~~d~l~pi~p~~R~~ie~~ap 111 (592)
..-|.+ +++.+++++|+.++|||+|+.| +|||+.++... ..+.+++. .|++|.+|.++++
T Consensus 61 G~~V~~-tg~~~~vpvg~~lLGRVvd~lG----------~piDg~g~i~~~~~~~~~~~~i~~-~ap~~~~R~~v~e--- 125 (507)
T PRK07165 61 NDELIE-LNNTNKVKTSKEYFGKIIDIDG----------NIIYPEAQNPLSKKFLPNTSSIFN-LAHGLMTVKTLNE--- 125 (507)
T ss_pred CCEEEE-CCCccEEECCccccCCEECCCC----------cccCCCCCCCcccccccccccccC-CCCCchhhCCCCc---
Confidence 445666 7899999999999999999999 58898876543 23445666 5999999999999
Q ss_pred CccccccceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------c
Q psy3765 112 SKENITGRIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------R 183 (592)
Q Consensus 112 ~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~ 183 (592)
|++||||+||+|+|||||||++|||++|+|||+| +.+|++ |...++.|||++||||.+||++|++++ +
T Consensus 126 -pL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~lal~~I~~---q~~~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~ 201 (507)
T PRK07165 126 -QLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNTIIN---QKNTNVKCIYVAIGQKRENLSRIYETLKEHDALKN 201 (507)
T ss_pred -eeecCchhhhhcCCcccCCEEEeecCCCCCccHHHHHHHHH---hcCCCeEEEEEEccCChHHHHHHHHHhhhcCceee
Confidence 8999999999999999999999999999999999 455554 456789999999999999999999998 5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhh
Q psy3765 184 GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGA 262 (592)
Q Consensus 184 ~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~er 262 (592)
|+||++|+| ||.+|+++|++|+|+|||||++ +|||+++|||||||+||||||+++||+|+ +|||+++|+.+++++||
T Consensus 202 tvvV~atsd-~~~~r~~ap~~a~tiAEyfrd~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlER 279 (507)
T PRK07165 202 TIIIDAPST-SPYEQYLAPYVAMAHAENISYN-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLER 279 (507)
T ss_pred eEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhc-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHh
Confidence 899999985 9999999999999999999999 99999999999999999999999999996 79999999999999999
Q ss_pred cccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHH
Q psy3765 263 ARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVL 342 (592)
Q Consensus 263 A~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~l 342 (592)
|+++.++||||++++++++ +||++|||+++++||+||||+|||+||++||||||||+.|+||+++.+++++|.+.+..+
T Consensus 280 Ag~~~g~GSITalpiV~t~-~dDis~pIpdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~q~~~~~~~a~~~ 358 (507)
T PRK07165 280 AGKFKNRKTITALPILQTV-DNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSKTITKVAGEI 358 (507)
T ss_pred ccCCCCCCceEEEEEEECC-CCCCCCcchhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccccccCHHHHHHHHHH
Confidence 9999878999999998877 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccc
Q psy3765 343 RKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 343 r~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~ 388 (592)
|++|++|+++++++++ +++ +.+.++..|+.....++++.|+.|+
T Consensus 359 r~~la~Y~e~e~~~~~-~~~-ld~~~~~~l~~g~~i~~~L~Q~~~~ 402 (507)
T PRK07165 359 SKIYRAYKRQLKLSML-DYD-LNKETSDLLFKGKMIEKMFNQKGFS 402 (507)
T ss_pred HHHHHHHHHHHHHHHH-HHh-CCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999998 765 8899999999888888888998865
No 23
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.5e-78 Score=653.07 Aligned_cols=339 Identities=22% Similarity=0.284 Sum_probs=304.5
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
.-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.++.+ .|++|.+|.++++ |++||
T Consensus 86 ~~V~~-tg~~~~v~vg~~lLGRV~d~~G----------~plD~~~~~~~~~~~pi~~-~~p~p~~R~~i~~----~l~TG 149 (439)
T PRK06936 86 TEVSP-TGTMHQVGVGEHLLGRVLDGLG----------QPFDGGHPPEPAAWYPVYA-DAPAPMSRRLIET----PLSLG 149 (439)
T ss_pred CEEEe-CCCceEEEeCccccCCEECCCC----------CccCCCCCCCccceeeccC-CCCChHHccccCC----CCcCC
Confidence 34555 6899999999999999999999 5788886655555667877 5999999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeC
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAST 190 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t 190 (592)
+++||.++|+++|||++|||++|+|||||+++|+++. ++++ |||++||||++||+||+++. ||++|++|
T Consensus 150 i~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~---~~dv-~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~at 225 (439)
T PRK06936 150 VRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA---EVDV-TVLALIGERGREVREFIESDLGEEGLRKAVLVVAT 225 (439)
T ss_pred cceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC---CCCE-EEEEEEccCcHHHHHHHHHHhcccccceeEEEEEC
Confidence 9999999999999999999999999999999998754 3576 88999999999999999764 69999999
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccCC
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEEG 269 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~~ 269 (592)
+|+||.+|++++++|+++|||||++|+|||+++||+||||+|+|||++++||+|. +|||+++|+.+++|+||||+. ++
T Consensus 226 sd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~-~~ 304 (439)
T PRK06936 226 SDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQS-DK 304 (439)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC-CC
Confidence 9999999999999999999999999999999999999999999999999999995 799999999999999999985 69
Q ss_pred cceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhcc
Q psy3765 270 GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349 (592)
Q Consensus 270 GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~ 349 (592)
||||+|+||+++ |||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|++|
T Consensus 305 GSIT~i~tVl~~-gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y 383 (439)
T PRK06936 305 GSITALYTVLVE-GDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKY 383 (439)
T ss_pred cceeeeEEEEcc-CCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccchhhCCHHHHHHHHHHHHHHHcc
Confidence 999999999988 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccccccccchhhhhHHHH
Q psy3765 350 TMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELM 403 (592)
Q Consensus 350 ~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi 403 (592)
+++++++++++|..++..+ +..+......+.|+.|+.++ .+++.++-..
T Consensus 384 ~e~e~li~iG~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~~-----~~~~~~~~~~ 433 (439)
T PRK06936 384 EEVELLLQIGEYQKGQDKEADQAIERIGAIRGFLRQGTHE-----LSHFNETLNL 433 (439)
T ss_pred hHHHHHHHhcCccCCCCHHHHHHHHhHHHHHHHcCCCCCC-----CCCHHHHHHH
Confidence 9999999999998766433 33333222347888887644 6666666553
No 24
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.2e-78 Score=652.28 Aligned_cols=340 Identities=21% Similarity=0.217 Sum_probs=306.3
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccc-cCccccCCCCCCcccccccccccCCccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSK-NRTLFDNLTPLHPKKLLLLERNIESKEN 115 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~-~r~~~d~l~pi~p~~R~~ie~~ap~~l~ 115 (592)
+..|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.... .+.++++ .|++|.+|.++++ +++
T Consensus 80 g~~V~~-tg~~~~v~vg~~llGRVid~~G----------~piDg~~~~~~~~~~~~i~~-~~p~~~~R~~~~~----~l~ 143 (442)
T PRK08927 80 GCRAVI-ANAAAAVRPSRAWLGRVVNALG----------EPIDGKGPLPQGPVPYPLRA-PPPPAHSRARVGE----PLD 143 (442)
T ss_pred CCEEEe-CCCccEEECChhhCCCEEccCC----------CCccCCCCCCCCcccccccC-CCcChHHcCCccc----ccc
Confidence 445666 7899999999999999999999 578988765443 4667877 5999999999998 899
Q ss_pred cccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEE
Q psy3765 116 ITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIA 188 (592)
Q Consensus 116 TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~ 188 (592)
||||+||+|+||++|||++|||++|+|||+|+++|+++. .+++ +||++||||++||+||+++. |++||+
T Consensus 144 TGir~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~---~~d~-~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~ 219 (442)
T PRK08927 144 LGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNA---DADV-SVIGLIGERGREVQEFLQDDLGPEGLARSVVVV 219 (442)
T ss_pred cceEEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhcc---CCCE-EEEEEEecCcHHHHHHHHHHhhccCceeEEEEE
Confidence 999999999999999999999999999999999998754 3455 56799999999999999744 699999
Q ss_pred eCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccc-
Q psy3765 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNI- 266 (592)
Q Consensus 189 ~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~- 266 (592)
+|+|+||.+|++++++|+++|||||++|+||||++||+||||+|+||||+++||+|+ +|||+++|+.+++|+||||+.
T Consensus 220 atsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~ 299 (442)
T PRK08927 220 ATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGP 299 (442)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999996 799999999999999999997
Q ss_pred cCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHH
Q psy3765 267 EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346 (592)
Q Consensus 267 ~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l 346 (592)
+++||||+|+||++| +|||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|
T Consensus 300 ~~~GSIT~i~tVlv~-gdD~~dpi~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l 378 (442)
T PRK08927 300 IGEGTITGLFTVLVD-GDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRRARQLM 378 (442)
T ss_pred CCCeeeeeeeeeEcc-CCCCCCchhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccccccCCHHHHHHHHHHHHHH
Confidence 569999999999987 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccccccccchhhhhHHH
Q psy3765 347 YSLTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQEL 402 (592)
Q Consensus 347 ~~~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeL 402 (592)
+.|+++++++++++|+.+++.+ ...++.....+.|+.|+..+ .+++.++--
T Consensus 379 ~~y~e~edli~lg~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e-----~~~~~~~~~ 430 (442)
T PRK08927 379 ATYADMEELIRLGAYRAGSDPEVDEAIRLNPALEAFLRQGKDE-----ATSLAEGYA 430 (442)
T ss_pred HHHHHHHHHHHhhCCcCCCCHHHHHHHHccHHHHHhcCCCCCC-----CCCHHHHHH
Confidence 9999999999999998887655 55566555556888887643 555555543
No 25
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.4e-78 Score=650.49 Aligned_cols=348 Identities=21% Similarity=0.269 Sum_probs=310.7
Q ss_pred CCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCC
Q psy3765 19 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPL 98 (592)
Q Consensus 19 dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi 98 (592)
+..-+|-..+..---. ....|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.+++. +|+
T Consensus 68 ~~~~~l~~~~~~~gi~-~g~~V~~-tg~~~~v~vg~~llGRVid~~G----------~plD~~~~~~~~~~~~i~~-~~~ 134 (444)
T PRK08972 68 GDLLYLMPIEELRGVL-PGARVTP-LGEQSGLPVGMSLLGRVIDGVG----------NPLDGLGPIYTDQRASRHS-PPI 134 (444)
T ss_pred CCEEEEEECCCcCCCC-CCCEEEE-CCCccEEEcChhhcCCeECCCC----------CCcCCCCCCCCCccccccC-CCC
Confidence 4445555432222122 2445556 6899999999999999999999 5788887655555667877 599
Q ss_pred CcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHH
Q psy3765 99 HPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178 (592)
Q Consensus 99 ~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~ 178 (592)
+|.+|.++.+ |++||+++||.++||++|||++|||++|+|||||+++|++. ..+++ +||++||||++||+||
T Consensus 135 ~p~~R~~i~e----~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~---~~~dv-~Vi~lIGER~rEv~ef 206 (444)
T PRK08972 135 NPLSRRPITE----PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG---TTADV-IVVGLVGERGREVKEF 206 (444)
T ss_pred ChhhcCCCCC----cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC---CCCCE-EEEEEEcCChHHHHHH
Confidence 9999999998 89999999999999999999999999999999999999863 23465 5568999999999999
Q ss_pred Hhhc-------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCC
Q psy3765 179 QRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDS 250 (592)
Q Consensus 179 ~~~~-------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~ 250 (592)
++++ ||++|++|+|+||.+|++++++|+++|||||++|+|||+++|||||||+|+||||+++||+|+ +|||+
T Consensus 207 i~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPp 286 (444)
T PRK08972 207 IEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPP 286 (444)
T ss_pred HHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCc
Confidence 9985 799999999999999999999999999999999999999999999999999999999999996 79999
Q ss_pred cccccchHHHhhcccc-cCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCC
Q psy3765 251 NALQRPKRFFGAARNI-EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREEL 329 (592)
Q Consensus 251 ~l~~~~~~~~erA~~~-~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~ 329 (592)
++|+.+++|+||||+. +++||||+|+||+++ ||||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.
T Consensus 287 svfs~l~~L~ERAg~~~~~~GSITai~tVl~~-gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~ 365 (444)
T PRK08972 287 SVFAKLPALVERAGNGGPGQGSITAFYTVLTE-GDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPM 365 (444)
T ss_pred hHHHHhHHHHHHhcCCCCCCceeeeEEEEEEe-CCCCCcchHHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCchh
Confidence 9999999999999997 458999999999998 78999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 330 LIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 330 ~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
+++++|++.++++|++|+.|++.++|+.+++|..+++.+ +..++.....++|++|...+
T Consensus 366 i~~~~h~~~a~~~r~~ls~y~~~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~~ 425 (444)
T PRK08972 366 VISEEHLEAMRRVKQVYSLYQQNRDLISIGAYKQGSDPRIDNAIRLQPAMNAFLQQTMKE 425 (444)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHhhHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999887766 67777777778898887754
No 26
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=8.5e-78 Score=657.89 Aligned_cols=339 Identities=17% Similarity=0.188 Sum_probs=309.5
Q ss_pred eECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccccc
Q psy3765 39 YLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG 118 (592)
Q Consensus 39 yV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGi 118 (592)
-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.+++. .|++|.+|.++++ |++|||
T Consensus 86 ~V~~-tg~~~~v~vg~~llGRV~d~~G----------~pld~~~~~~~~~~~~i~~-~~p~~~~R~~i~~----pl~TGi 149 (501)
T TIGR00962 86 TVKR-TGRILKVPVGDGLLGRVVNALG----------QPIDGKGPIDSDEFRPIEK-IAPGVMERKSVHE----PLQTGI 149 (501)
T ss_pred eeEe-cCCccEEecChHhcCCEeCCCC----------CeeCCCCCcCCCCceeeec-CCCChhhcCCcCc----eeccCC
Confidence 3444 6899999999999999999999 5788877665555667776 4789999999998 899999
Q ss_pred ceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeC
Q psy3765 119 RIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAST 190 (592)
Q Consensus 119 raID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t 190 (592)
|+||+|+|||||||++|||++|+|||+| +.+|+++ .+.++.|||++||||++||.+|++++ +|++|++|
T Consensus 150 ~aID~l~pigrGQr~~I~g~~g~GKt~Lal~~i~~~---~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~at 226 (501)
T TIGR00962 150 KAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIINQ---KDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAAT 226 (501)
T ss_pred ceeeccCCcccCCEEEeecCCCCCccHHHHHHHHhh---cCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEec
Confidence 9999999999999999999999999999 5777765 45689899999999999999999998 68999999
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc--
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE-- 267 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~-- 267 (592)
+|+||.+|++++++|+++|||||++|+||||++||+||||+||||||+++||+|+ +|||+++|+.+++++|||+++.
T Consensus 227 sd~p~~~r~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~ 306 (501)
T TIGR00962 227 ASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDE 306 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999999999999999996 7999999999999999999973
Q ss_pred -CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHH
Q psy3765 268 -EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346 (592)
Q Consensus 268 -~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l 346 (592)
++||||+|+|++++ +||++|||++++++|+||||+|||+||++||||||||+.|+||++..++.++|.+.+.++|..|
T Consensus 307 ~g~GSITal~~V~~~-~dD~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~~~~~~~a~~lr~~l 385 (501)
T TIGR00962 307 KGGGSLTALPIIETQ-AGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQVAGSLRLEL 385 (501)
T ss_pred CCCcceEEEEEEECC-CCCCCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCccccCHHHHHHHHHHHHHH
Confidence 47999999999887 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHHHH
Q psy3765 347 YSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMF 404 (592)
Q Consensus 347 ~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~ 404 (592)
++|++++++++++ ..+++..+..++.....++|+.|..++ .+++.+|-.++
T Consensus 386 a~y~e~~~l~~~g--~~ld~~~~~~l~~~~~i~~fL~Q~~~~-----~~~~~~q~~~l 436 (501)
T TIGR00962 386 AQYRELEAFSQFA--SDLDEATKAQLERGKRLVELLKQPQYK-----PLPVEEQVVIL 436 (501)
T ss_pred HHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHhcCCCCC-----CcCHHHHHHHH
Confidence 9999999999996 567888899999666666899998865 56777876654
No 27
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=1e-77 Score=650.66 Aligned_cols=328 Identities=16% Similarity=0.152 Sum_probs=303.2
Q ss_pred eECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccccc
Q psy3765 39 YLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG 118 (592)
Q Consensus 39 yV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGi 118 (592)
-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.+++. .|++|.+|.++++ |++|||
T Consensus 66 ~V~~-tg~~~~vpvg~~llGRVvd~lG----------~piDg~~~~~~~~~~~i~~-~ap~~~~R~~v~e----pl~TGI 129 (485)
T CHL00059 66 SVKA-TGKIAQIPVSEAYLGRVVNALA----------KPIDGKGEISASESRLIES-PAPGIISRRSVYE----PLQTGL 129 (485)
T ss_pred EEEE-CCCcceEEcCHhhcCCEECCCC----------CeeCCCCCcCCCccccccC-CCCCchhccCCCc----ccccCc
Confidence 3444 6899999999999999999999 5789887765556667877 5899999999998 899999
Q ss_pred ceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeC
Q psy3765 119 RIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAST 190 (592)
Q Consensus 119 raID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t 190 (592)
|+||+|+|||||||++|||++|+|||+| +.+|+++ ...++.|||++||||++||.+|++++ +|+||++|
T Consensus 130 ~aID~l~pigrGQR~~I~g~~g~GKt~Lal~~I~~q---~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~at 206 (485)
T CHL00059 130 IAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ---KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAET 206 (485)
T ss_pred eeeccccccccCCEEEeecCCCCCHHHHHHHHHHhc---ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeC
Confidence 9999999999999999999999999999 5666654 45689999999999999999999998 58999999
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc--
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE-- 267 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~-- 267 (592)
+|+||.+|+++||+|+++|||||++|+||||++|||||||+||||||+++||+|+ +||||++|+.+++|+|||++..
T Consensus 207 ad~~~~~r~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~ 286 (485)
T CHL00059 207 ADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQ 286 (485)
T ss_pred CCCCHHHHHHHHHHHhhHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999996 7999999999999999999984
Q ss_pred -CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHH
Q psy3765 268 -EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346 (592)
Q Consensus 268 -~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l 346 (592)
++||||+|+|++++ +||+++||++++++|+||||+|||+||++||||||||+.|+||++..++.++|.+++.++|..|
T Consensus 287 ~~~GSITal~~V~~~-~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~aq~~~~~~~a~~lr~~l 365 (485)
T CHL00059 287 LGEGSMTALPIVETQ-AGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLEL 365 (485)
T ss_pred CCCcceEEEEEEEcc-CCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCcccchhcCCchhhcHHHHHHHHHHHHHH
Confidence 59999999999887 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccc
Q psy3765 347 YSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 347 ~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~ 388 (592)
++|+++++++++. ..+.+..+..++.....++|+.|..++
T Consensus 366 a~y~e~e~~~~~~--~~~d~~~~~~i~~~~~i~~~L~Q~~~~ 405 (485)
T CHL00059 366 AQFAELEAFAQFA--SDLDKATQNQLARGQRLRELLKQSQSA 405 (485)
T ss_pred HHHHHHHHHHHhh--cCCCHHHHHHHHhHHHHHHHhcCCCCC
Confidence 9999999999993 567777788888777778999998755
No 28
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=8.2e-75 Score=626.98 Aligned_cols=328 Identities=17% Similarity=0.147 Sum_probs=289.5
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCC------ccccc-cCccccCCCCCCcccccccccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEK------PELSK-NRTLFDNLTPLHPKKLLLLERN 109 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~------p~~~~-~r~~~d~l~pi~p~~R~~ie~~ 109 (592)
..-|.+ +++.+++++|+.++|||+|+.| +|+||++ +.... .+.+++. .|++|.+|.++++
T Consensus 105 G~~V~~-tg~~~~VpVG~~lLGRVvD~lG----------~PIDg~~~~~~~g~i~~~~~~~pIe~-~ap~~~~R~~v~e- 171 (574)
T PTZ00185 105 GQKVMA-TGKLLYIPVGAGVLGKVVNPLG----------HEVPVGLLTRSRALLESEQTLGKVDA-GAPNIVSRSPVNY- 171 (574)
T ss_pred CCEEEE-CCCccEEECCcccccCEECCCC----------cccCCCCccccCCCCCcccccccccC-CCcChhhcCCCCC-
Confidence 344555 6899999999999999999999 5788773 22222 3557877 5999999999998
Q ss_pred cCCccccccceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhc-----CCCeEEEEEEeccchhHHHHHHhhc-
Q psy3765 110 IESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTN-----HSEAIMIVMLIDERPEEVTEMQRSV- 182 (592)
Q Consensus 110 ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~-----~~~~~~I~~lIGeR~~Ev~e~~~~~- 182 (592)
|++||||+||+|+|||||||++|||++|+|||+| +.+|+++...+ ..++.|||++||||.+||.++++++
T Consensus 172 ---pL~TGIkaID~LiPIGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~ 248 (574)
T PTZ00185 172 ---NLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLR 248 (574)
T ss_pred ---cCcCCceeeeccccccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999 47777765321 2346799999999999999999887
Q ss_pred ------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCccccc
Q psy3765 183 ------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQR 255 (592)
Q Consensus 183 ------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~ 255 (592)
+|+||++|+|+||.+|+++|++|+|+||||||+|+|||+++|||||||+||||||+++||+|+ +|||+++|+.
T Consensus 249 e~GaL~~TvVV~AtAdep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~l 328 (574)
T PTZ00185 249 SYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYL 328 (574)
T ss_pred hcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999996 7999999999
Q ss_pred chHHHhhccccc---CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCC
Q psy3765 256 PKRFFGAARNIE---EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQ 332 (592)
Q Consensus 256 ~~~~~erA~~~~---~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~ 332 (592)
+++|+|||+++. ++||||+|++++++ +||++|||++++++|+||||+|||+||++|+||||||+.|+||++...+.
T Consensus 329 hsrLlERAg~l~~~~G~GSITAlpiV~t~-adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~aq~ 407 (574)
T PTZ00185 329 HSRLLERAAMLSPGKGGGSVTALPIVETL-SNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQN 407 (574)
T ss_pred hHHHHHhcccccCCCCCcceEEEEEEEcc-CCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCccCC
Confidence 999999999973 47999999998877 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcc
Q psy3765 333 DDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQT 386 (592)
Q Consensus 333 ~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~ 386 (592)
+.|.+.+.++|..|++|+|++...+.+. +-|...|++-....+.+.|..
T Consensus 408 ~~~k~vAg~lr~~LaqY~El~~fa~fgs-----dld~~~l~rG~r~~ellkQ~~ 456 (574)
T PTZ00185 408 VAMKAVAGKLKGILAEYRKLAADSVGGS-----QVQTVPMIRGARFVALFNQKN 456 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-----hhhHHHHHhhHHHHHHHCCCC
Confidence 9999999999999999999999998766 223366664444445555543
No 29
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.9e-75 Score=625.34 Aligned_cols=329 Identities=23% Similarity=0.299 Sum_probs=299.2
Q ss_pred eECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccccc
Q psy3765 39 YLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG 118 (592)
Q Consensus 39 yV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGi 118 (592)
-|.+ +++.+.+++|+.|+|||+|+.| +|+|+.++.....+.++++ .|++|.+|.++.+ |++||+
T Consensus 93 ~V~~-tg~~~~v~vg~~llGRV~d~~G----------~plD~~~~~~~~~~~~i~~-~~~~p~~R~~i~~----~l~TGi 156 (451)
T PRK05688 93 RVVP-LADTGRLPMGMSMLGRVLDGAG----------RALDGKGPMKAEDWVPMDG-PTINPLNRHPISE----PLDVGI 156 (451)
T ss_pred EEEE-CCCccEEEecccccCCEEeccC----------ceecCCCCCCccceecccC-CCCCHHHcccccC----Ccccce
Confidence 3444 5899999999999999999999 5788887654455667887 5999999999998 899999
Q ss_pred ceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCC
Q psy3765 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTF 191 (592)
Q Consensus 119 raID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~ 191 (592)
++||.|+||++|||++|||++|+|||||+++|++. ..+++ +|+++||+|++|+++|++.+ ++++|++|+
T Consensus 157 ~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~---~~~dv-~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~ats 232 (451)
T PRK05688 157 RSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRF---TEADI-IVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPA 232 (451)
T ss_pred eeecceEEecCCcEEEEECCCCCCHHHHHHHHhCC---CCCCE-EEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECC
Confidence 99999999999999999999999999999988763 23454 46789999999999999987 689999999
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC-C
Q psy3765 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE-G 269 (592)
Q Consensus 192 d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~-~ 269 (592)
|+||.+|++++++|+++|||||++|+||||++|||||||+|+||||+++||+|+ +|||+++|+.+++|+||||+.++ +
T Consensus 233 d~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~ 312 (451)
T PRK05688 233 DDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGG 312 (451)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999995 89999999999999999999863 8
Q ss_pred cceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhcc
Q psy3765 270 GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349 (592)
Q Consensus 270 GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~ 349 (592)
||||+|+||+++ ||||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|+.|
T Consensus 313 GSITai~tVl~~-gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y 391 (451)
T PRK05688 313 GSITAFYTVLSE-GDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQLWSRY 391 (451)
T ss_pred ceeeEEEEEEec-CCCCCCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccchhhCCHHHHHHHHHHHHHHHHH
Confidence 999999999998 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 350 TMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 350 ~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
++.++++++++|..+.+.+ +..+......+.|+.|...+
T Consensus 392 ~~~~dli~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e 431 (451)
T PRK05688 392 QQSRDLISVGAYVAGGDPETDLAIARFPHLVQFLRQGLRE 431 (451)
T ss_pred HHHHHHHHHhCccCCCCHHHHHHHHhhHHHHHHhCCCCCC
Confidence 9999999999998665444 55555555558888887644
No 30
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=8.1e-75 Score=622.93 Aligned_cols=348 Identities=23% Similarity=0.259 Sum_probs=306.6
Q ss_pred CCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCC
Q psy3765 19 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPL 98 (592)
Q Consensus 19 dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi 98 (592)
++.-++-..+...--+. ...|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....++++++ +|+
T Consensus 43 ~~~v~l~~~~~t~gl~~-G~~V~~-tg~~~~v~vg~~llGrVid~~G----------~pld~~~~~~~~~~~~i~~-~~~ 109 (411)
T TIGR03496 43 GDRVLLMPLEDVEGLRP-GARVFP-LEGPLRLPVGDSLLGRVIDGLG----------RPLDGKGPLDAGERVPLYA-PPI 109 (411)
T ss_pred CCEEEEEEccCccCCCC-CCEEEE-CCCccEEEcchhhcCCEECCCC----------CCcCCCCCCCccccccccc-CCC
Confidence 44444444433222222 344555 6899999999999999999999 4788876654456677877 589
Q ss_pred CcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHH
Q psy3765 99 HPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178 (592)
Q Consensus 99 ~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~ 178 (592)
+|++|.++++ ++.||+++||.++|+++|||++|+|++|+|||+|+++|++.. .+++ .+|++||||++|+++|
T Consensus 110 ~~~~R~~~~~----~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~---~~~~-~vi~~iGer~~ev~e~ 181 (411)
T TIGR03496 110 NPLKRAPIDE----PLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYT---EADV-VVVGLIGERGREVKEF 181 (411)
T ss_pred CHHhccCcce----EeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCC---CCCE-EEEEEEecChHHHHHH
Confidence 9999999998 899999999999999999999999999999999999888643 3454 5678999999999999
Q ss_pred Hhhc-------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCC
Q psy3765 179 QRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDS 250 (592)
Q Consensus 179 ~~~~-------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~ 250 (592)
++++ ||++|++|+|+||.+|++++++|+++|||||++|+||||++||+||||+|+|||++++||+|+ +|||+
T Consensus 182 ~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~ 261 (411)
T TIGR03496 182 IEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPP 261 (411)
T ss_pred HHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCH
Confidence 9987 699999999999999999999999999999999999999999999999999999999999996 79999
Q ss_pred cccccchHHHhhcccc-cCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCC
Q psy3765 251 NALQRPKRFFGAARNI-EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREEL 329 (592)
Q Consensus 251 ~l~~~~~~~~erA~~~-~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~ 329 (592)
++|+.+++|+|||+++ +++||||+|+|++++ +|||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.
T Consensus 262 ~~f~~l~~l~ERag~~~~~~GSIT~~~tv~~~-~dd~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~ 340 (411)
T TIGR03496 262 SVFAKLPQLVERAGNGEEGKGSITAFYTVLVE-GDDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPD 340 (411)
T ss_pred HHHHHhHHHHHHhcccCCCCcceeEEEEEEcc-CCCCCCcchhhhcccccEEEEEchhHHhCCCCCccCCCcccccchhh
Confidence 9999999999999998 579999999999988 58999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 330 LIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 330 ~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
+++++|++.++++|++|++|+++++++++++|+.+.+.+ +..++.....+.|+.|+.++
T Consensus 341 ~~~~~~~~~a~~~r~~l~~y~e~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~~ 400 (411)
T TIGR03496 341 VVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQAIALYPRIEAFLQQGMRE 400 (411)
T ss_pred hCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998766533 44566555558888887754
No 31
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.9e-74 Score=623.17 Aligned_cols=340 Identities=22% Similarity=0.237 Sum_probs=304.3
Q ss_pred eECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccccc
Q psy3765 39 YLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG 118 (592)
Q Consensus 39 yV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGi 118 (592)
-|.+ +++.+++++|+.++|||+|+.| +|+|+.++.....+.++++ .|++|.+|.++++ |++||+
T Consensus 88 ~V~~-tg~~~~v~vg~~lLGrV~d~~G----------~piD~~~~~~~~~~~~i~~-~~p~p~~R~~i~e----~l~TGi 151 (441)
T PRK09099 88 RVIG-LGRPLSVPVGPALLGRVIDGLG----------EPIDGGGPLDCDELVPVIA-APPDPMSRRMVEA----PLPTGV 151 (441)
T ss_pred EEEe-CCCccEEEeccccccCEEcccC----------CccCCCCCCcccccccccc-CCCChhhcCCccc----ccCCCc
Confidence 4444 6899999999999999999999 5788876654445567776 5999999999998 899999
Q ss_pred ceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCC
Q psy3765 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTF 191 (592)
Q Consensus 119 raID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~ 191 (592)
++||.++|+++||+++|+|++|+|||+|+++|+... .+++ ++|++||||++|+++|++.+ ++++|++|+
T Consensus 152 ~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~---~~d~-~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~ts 227 (441)
T PRK09099 152 RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT---QCDV-NVIALIGERGREVREFIELILGEDGMARSVVVCATS 227 (441)
T ss_pred eeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC---CCCe-EEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECC
Confidence 999999999999999999999999999999998643 2454 67899999999999999987 689999999
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccCCc
Q psy3765 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEEGG 270 (592)
Q Consensus 192 d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~~G 270 (592)
|+||.+|++++++|+++|||||++|+|||+++||+||||+|+|||++++||+|+ +|||+++|+.+++|+||||+. ++|
T Consensus 228 d~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~-~~G 306 (441)
T PRK09099 228 DRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMG-ETG 306 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCC-CCc
Confidence 999999999999999999999999999999999999999999999999999996 799999999999999999974 699
Q ss_pred ceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccc
Q psy3765 271 SLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350 (592)
Q Consensus 271 SIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~ 350 (592)
|||+|+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|++|+
T Consensus 307 SIT~i~tVl~~-~dd~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~lr~~la~y~ 385 (441)
T PRK09099 307 SITALYTVLAE-DESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHR 385 (441)
T ss_pred chheeEEEEec-CCCcCCcchhhhheecceEEEEcHHHHhCCCCCccCCccccCccchhcCCHHHHHHHHHHHHHHHhhH
Confidence 99999999877 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccccccccchhhhhHHHHHH
Q psy3765 351 MTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFA 405 (592)
Q Consensus 351 ~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~ 405 (592)
++++++++++|+.+.+.. ...++.....+.|++|+. +..+++.++-..++
T Consensus 386 e~e~li~iG~y~~g~d~~~d~~i~~~~~i~~fL~Q~~-----~~~~~~~~t~~~l~ 436 (441)
T PRK09099 386 EVETLLQVGEYRAGSDPVADEAIAKIDAIRDFLSQRT-----DEYSDPDATLAALA 436 (441)
T ss_pred HHHHHHHhcCccCCCChhHHHHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHH
Confidence 999999999998877544 444554444468888864 34777777765443
No 32
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.2e-74 Score=622.14 Aligned_cols=348 Identities=22% Similarity=0.232 Sum_probs=307.8
Q ss_pred CCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccc-cCccccCCCC
Q psy3765 19 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSK-NRTLFDNLTP 97 (592)
Q Consensus 19 dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~-~r~~~d~l~p 97 (592)
++.-++-..+...--... .-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.... .+.+++. .|
T Consensus 45 ~~~v~l~~~~~~~gi~~G-~~V~~-tg~~~~i~vg~~lLGRViD~lG----------~plD~~~~~~~~~~~~~i~~-~~ 111 (418)
T TIGR03498 45 GDRVLLMPFEPLEGVGLG-CAVFA-REGPLAVRPHPSWLGRVINALG----------EPIDGKGPLPQGERRYPLRA-SP 111 (418)
T ss_pred CCeEEEEEccCCcCCCCC-CEEEE-CCCccEEEeChhhcCCEECCCC----------CccCCCCCCCCCcceechhh-cC
Confidence 444455554333222232 33444 5899999999999999999999 578887654333 3457766 58
Q ss_pred CCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 98 LHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 98 i~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
++|.+|.++++ +++||+++||+++|+++|||++|+|++|+|||+|+++|++.. .++. .+|+++|||++||++
T Consensus 112 p~~~~R~~i~~----~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~---~~~~-gvi~~iGer~~ev~~ 183 (418)
T TIGR03498 112 PPAMSRARVGE----PLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNT---DADV-VVIALVGERGREVRE 183 (418)
T ss_pred CChhhccCccc----ccCCccEEEeeeccccCCcEEEEECCCCCChHHHHHHHhCCC---CCCE-EEEEEEeeechHHHH
Confidence 99999999998 899999999999999999999999999999999999888643 3454 578999999999999
Q ss_pred HHhhc-------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCC
Q psy3765 178 MQRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVD 249 (592)
Q Consensus 178 ~~~~~-------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp 249 (592)
|+++. +|+||++|+|+||.+|++++++|+++|||||++|+|||+++||+||||+|+||||+++||+|. +|||
T Consensus 184 ~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp 263 (418)
T TIGR03498 184 FLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYT 263 (418)
T ss_pred HHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCC
Confidence 99864 689999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred CcccccchHHHhhcccc-cCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccC
Q psy3765 250 SNALQRPKRFFGAARNI-EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREE 328 (592)
Q Consensus 250 ~~l~~~~~~~~erA~~~-~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~ 328 (592)
+++|+.+++++|||++. +++||||+|+||+++ +|||+|||+|++++|+||||+|||+||++||||||||+.|+||+++
T Consensus 264 ~~vf~~l~~L~ERag~~~~~~GSIT~~~tVl~~-gdd~~dpi~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~ 342 (418)
T TIGR03498 264 PSVFSELPRLLERAGPGAEGKGSITGIFTVLVD-GDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAP 342 (418)
T ss_pred chhhhhhhHHHHHhccCCCCCcceeeeEEEecc-CCCCCCcchhhhheeeeeEEEECHHHHhCCCCCccCCcccccccch
Confidence 99999999999999985 569999999999988 7899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 329 LLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 329 ~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
.+++++|++.++++|++|+.|+++++++++++|+++++.+ +..++.....+.|+.|...+
T Consensus 343 ~~~~~~~~~~a~~~r~~l~~y~e~~~~~~~g~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~~ 403 (418)
T TIGR03498 343 RVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIRLVPKIYEFLTQGPDE 403 (418)
T ss_pred hhcCHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcCCCCHHHHHHHHhHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999877655 77788777778898887754
No 33
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.1e-74 Score=622.23 Aligned_cols=330 Identities=24% Similarity=0.295 Sum_probs=300.9
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
...|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....++++++ .|++|.+|.++++ ++.|
T Consensus 60 G~~V~~-tg~~~~vpvg~~lLGRVid~~G----------~plD~~~~~~~~~~~~i~~-~~p~~~~R~~~~~----~~~t 123 (413)
T TIGR03497 60 GSLVIA-TGRPLAIKVGKGLLGRVLDGLG----------RPLDGEGPIIGEEPYPLDN-PPPNPLKRPRIRD----PLET 123 (413)
T ss_pred CCEEEE-cCCeeEEEcchhhcCCEEcCCC----------CcccCCCCCCCCccccccC-CCcChHHccchhh----hccc
Confidence 445666 7899999999999999999999 5788776654445667877 5899999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
|+++||.++|+++|||++|||++|+|||+|+++|+++. +++. .++++||||++|+++|+++. |+++|++
T Consensus 124 Gi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~---~~~~-gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~ 199 (413)
T TIGR03497 124 GIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA---KADI-NVIALIGERGREVRDFIEKDLGEEGLKRSVVVVA 199 (413)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCe-EEEEEEccchHHHHHHHHHHhcccccceEEEEEE
Confidence 99999999999999999999999999999999888643 3554 57889999999999998874 6899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
|+|+||.+|++++++|+|+|||||++|+||||++|||||||+|+||||+++||+|+ +|||+++|+.+++|+|||++ .+
T Consensus 200 tsd~~~~~r~~~~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~-~~ 278 (413)
T TIGR03497 200 TSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN-SQ 278 (413)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcC-CC
Confidence 99999999999999999999999999999999999999999999999999999996 69999999999999999999 47
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhc
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~ 348 (592)
+||||+|+||+++ +|||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|++
T Consensus 279 ~GSIT~~~tVl~~-gdD~~dpi~~~~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~ 357 (413)
T TIGR03497 279 KGSITGFYTVLVD-GDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAV 357 (413)
T ss_pred CcceeEEEEEEcc-CCCCCCcchhhccccccEEEEECHHHHhCCCCCccCCccccccCccccCCHHHHHHHHHHHHHHHh
Confidence 9999999999998 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhccccccCChh-hhHHHhhccchhHHHhhcccc
Q psy3765 349 LTMTSFTVSLFFIKRTIPV-EKNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 349 ~~~~~~li~l~g~~~~~~~-~k~~L~~~~i~e~~l~q~~f~ 388 (592)
|+++++++++++|+.+++. ....+......+.|+.|..++
T Consensus 358 y~e~~~li~~g~~~~g~d~~~~~~i~~~~~i~~fl~Q~~~~ 398 (413)
T TIGR03497 358 YKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSFLKQGIDE 398 (413)
T ss_pred hHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999988765 456666555567888887754
No 34
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=4e-74 Score=620.06 Aligned_cols=327 Identities=24% Similarity=0.312 Sum_probs=298.5
Q ss_pred eECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccccc
Q psy3765 39 YLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG 118 (592)
Q Consensus 39 yV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGi 118 (592)
-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++. ...+.++++ .|++|.+|.++++ ++.||+
T Consensus 89 ~v~~-tg~~~~v~vg~~llGrv~d~~G----------~pld~~~~~-~~~~~~i~~-~~p~p~~R~~~~~----~l~TGi 151 (440)
T PRK06820 89 WVTP-LGHMHQVQVGADLAGRILDGLG----------APIDGGPPL-TGQWRELDC-PPPSPLTRQPIEQ----MLTTGI 151 (440)
T ss_pred EEEE-CCCCcEEEechhhcCCEECccC----------CccCCCCCC-CcccccccC-CCCChhhcCCchh----hccCCC
Confidence 3555 6899999999999999999999 578887654 344557877 5999999999998 899999
Q ss_pred ceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCC
Q psy3765 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTF 191 (592)
Q Consensus 119 raID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~ 191 (592)
|+||.|+|+++|||++|||++|+|||+|+++|+++ .++++ +||++||||++|+++|+++. +++||++++
T Consensus 152 ~aID~l~~i~~Gqri~I~G~sG~GKStLl~~I~~~---~~~dv-~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~ats 227 (440)
T PRK06820 152 RAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCAD---SAADV-MVLALIGERGREVREFLEQVLTPEARARTVVVVATS 227 (440)
T ss_pred ceecceEEecCCCEEEEECCCCCChHHHHHHHhcc---CCCCE-EEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCC
Confidence 99999999999999999999999999999988864 34565 57799999999999999886 689999999
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccCCc
Q psy3765 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEEGG 270 (592)
Q Consensus 192 d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~~G 270 (592)
|+||.+|++++++|+++|||||++|+||||++||+||||+|+|||++++||+|. +|||+++|+.+++|+||||+. ++|
T Consensus 228 d~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~-~~G 306 (440)
T PRK06820 228 DRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS-DRG 306 (440)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC-CCc
Confidence 999999999999999999999999999999999999999999999999999995 799999999999999999996 799
Q ss_pred ceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccc
Q psy3765 271 SLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350 (592)
Q Consensus 271 SIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~ 350 (592)
|||+|+||+++ ||||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++.+|++|+.|+
T Consensus 307 SIT~i~tVl~~-gdD~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~ 385 (440)
T PRK06820 307 SITAFYTVLVE-GDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQ 385 (440)
T ss_pred ceeEEEEEEcc-CCCCCCcchhhhccccceEEEECHHHHhCCCCCccCCcccccccchhhCCHHHHHHHHHHHHHHHhhh
Confidence 99999999998 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 351 MTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 351 ~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
++++|+++++|..+++.+ +..+......+.|+.|..++
T Consensus 386 e~~~li~~G~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~e 424 (440)
T PRK06820 386 EIELLVRVGEYQAGEDLQADEALQRYPAICAFLQQDHSE 424 (440)
T ss_pred HHHHHHHhhCccCCCCHHHHHHHHhhHHHHHHhCCCCCC
Confidence 999999999999776555 45555555567888887644
No 35
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=7.5e-75 Score=592.52 Aligned_cols=263 Identities=18% Similarity=0.233 Sum_probs=248.8
Q ss_pred ccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccccceeeccccc
Q psy3765 48 FNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127 (592)
Q Consensus 48 ~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~Pi 127 (592)
+++++|+.++|||+|+.| +|+|+.++.....++++++ .|++|.+|.++++ +++||||+||+|+||
T Consensus 2 ~~vpvg~~llGRv~d~~G----------~piD~~~~~~~~~~~~i~~-~~p~~~~R~~~~e----~L~TGIr~ID~l~pi 66 (274)
T cd01133 2 ISVPVGPETLGRIFNVLG----------EPIDERGPIKTKKTWPIHR-EAPEFVEQSTKTE----ILETGIKVIDLLAPY 66 (274)
T ss_pred cEEecChhhcCCEECCCC----------CccCCCCCCCccccccccC-CCCCchhhcCcCc----ccccCceeeeccCCc
Confidence 678999999999999999 5788887765556778887 5999999999998 899999999999999
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCCCCCHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTFDEPAYRHVQ 200 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~d~~~~~r~~ 200 (592)
|||||++|||++|+|||+|++++++++..+++++ |||++||||++||+||++++ +|+||++|+|+||.+|++
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~-~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGY-SVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCE-EEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 9999999999999999999999999998777775 89999999999999999998 689999999999999999
Q ss_pred HHHhHHHHHHHHHHc-CCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccCCcceeeEEEE
Q psy3765 201 VAEMVLEKAKRLVEM-KKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEEGGSLTIIATA 278 (592)
Q Consensus 201 ~~~~a~t~AE~~r~~-G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tv 278 (592)
++++|+++|||||++ |+||||++||+||||+|+||+++++||+|+ +|||+++|+.+++|+|||++. ++||||+|+|+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~~-~~GSiT~~~~v 224 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST-KKGSITSVQAV 224 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcCC-CCcccceEEEE
Confidence 999999999999998 999999999999999999999999999997 599999999999999999984 79999999999
Q ss_pred EeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccC
Q psy3765 279 LIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREE 328 (592)
Q Consensus 279 lv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~ 328 (592)
+++ +||++|||++++++++||||+|||+||++||||||||+.|+||+++
T Consensus 225 ~~~-~dD~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~ 273 (274)
T cd01133 225 YVP-ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred Eec-CCCCCCchHHHHHHhcceEEEEcHHHHhCCCCCCcCCccchhcccC
Confidence 988 6899999999999999999999999999999999999999999985
No 36
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.6e-74 Score=620.83 Aligned_cols=324 Identities=24% Similarity=0.282 Sum_probs=295.8
Q ss_pred ccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccccceeec
Q psy3765 44 QIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDL 123 (592)
Q Consensus 44 ~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~ 123 (592)
.++.+.+++|+.++|||+|+.| +|+|+.++.....+.++++ +|++|.+|.++++ +++||||+||+
T Consensus 104 ~~~~~~v~vg~~llGRvid~~G----------~piDg~~~~~~~~~~~i~~-~~~~p~~R~~i~e----~l~TGiraID~ 168 (455)
T PRK07960 104 LQSGKQLPLGPALLGRVLDGSG----------KPLDGLPAPDTGETGALIT-PPFNPLQRTPIEH----VLDTGVRAINA 168 (455)
T ss_pred CCCceEEECCcccccCEECCCc----------cccCCCCCCCCCccccccC-CCcChHHhccccc----chhccceeeee
Confidence 3899999999999999999999 5889887655555667877 6999999999998 89999999999
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCCCCCHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTFDEPAY 196 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~d~~~~ 196 (592)
|+|+++||+++|+|++|+|||+|+++|++. .++++ +|+.+||+|++|+.++++++ +++||++++|+||.
T Consensus 169 ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~---~~~d~-iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~ 244 (455)
T PRK07960 169 LLTVGRGQRMGLFAGSGVGKSVLLGMMARY---TQADV-IVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPL 244 (455)
T ss_pred cccccCCcEEEEECCCCCCccHHHHHHhCC---CCCCE-EEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHH
Confidence 999999999999999999999999988863 24554 56689999999999999876 58999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc-CCcceee
Q psy3765 197 RHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE-EGGSLTI 274 (592)
Q Consensus 197 ~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~-~~GSIT~ 274 (592)
+|++++++|+++||||||+|+|||+++||+||||+|+|||++++||+|+ +|||+++|+.+++|+|||++.. ++||||+
T Consensus 245 ~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~~~GSIT~ 324 (455)
T PRK07960 245 LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITA 324 (455)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCCCCeeeee
Confidence 9999999999999999999999999999999999999999999999996 7999999999999999999964 5899999
Q ss_pred EEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccccHHH
Q psy3765 275 IATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSF 354 (592)
Q Consensus 275 i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~ 354 (592)
|+|++++ +|||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++.+|++|+.|++.++
T Consensus 325 i~tVlv~-~dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~~~~~~~~~~~~~r~~l~~Y~~~~d 403 (455)
T PRK07960 325 FYTVLTE-GDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQFKQLLSSFQRNRD 403 (455)
T ss_pred EEEEEEc-CCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCChhh--hHHHhhccchhHHHhhcccc
Q psy3765 355 TVSLFFIKRTIPVE--KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 355 li~l~g~~~~~~~~--k~~L~~~~i~e~~l~q~~f~ 388 (592)
|+++++|..+++.. +..... ...+.|+.|..++
T Consensus 404 li~ig~y~~G~d~~~D~ai~~~-~~i~~fl~Q~~~e 438 (455)
T PRK07960 404 LVSVGAYAKGSDPMLDKAIALW-PQLEAFLQQGIFE 438 (455)
T ss_pred HHHhcCccCCCCHHHHHHHHhH-HHHHHHhCCCCCC
Confidence 99999998887764 333333 3337888886644
No 37
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=1.3e-74 Score=590.11 Aligned_cols=263 Identities=17% Similarity=0.224 Sum_probs=244.3
Q ss_pred ccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccccceeeccccc
Q psy3765 48 FNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127 (592)
Q Consensus 48 ~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~Pi 127 (592)
+++++|+.++|||+|+.| +|+|+.++.....+.+++. .|++|++|.++++ |++||||+||+|+||
T Consensus 2 ~~Vpvg~~lLGRVvd~lG----------~piD~~~~~~~~~~~~i~~-~ap~~~~R~~i~e----~l~TGIkaID~l~pi 66 (276)
T cd01135 2 LKVPVSEDMLGRIFNGSG----------KPIDGGPEILAEEYLDING-PPINPVARIYPEE----MIQTGISAIDGMNTL 66 (276)
T ss_pred cEEECChhhcCCEECCCC----------CCCCCCCCCCCCceeeccC-CCcCchhcCCccc----ccccCcEeeeccccc
Confidence 578999999999999999 5788887654555667877 5999999999998 899999999999999
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHH--hcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCCCCCHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAIT--TNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTFDEPAYRH 198 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~--~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~d~~~~~r 198 (592)
|||||++|||++|+|||+|+.+|+++.. +++....|||++||||.+||.||++++ +|++|++|+|+||.+|
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 9999999999999999999999998764 222334699999999999999999998 6899999999999999
Q ss_pred HHHHHhHHHHHHHHHHc-CCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC-CcceeeE
Q psy3765 199 VQVAEMVLEKAKRLVEM-KKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE-GGSLTII 275 (592)
Q Consensus 199 ~~~~~~a~t~AE~~r~~-G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~-~GSIT~i 275 (592)
++++++|+++|||||++ |+|||+++||+||||+|+||||+++||+|+ +|||+++|+.+++++|||+++.+ +||||+|
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSITa~ 226 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQI 226 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCCCCeeEEEE
Confidence 99999999999999997 999999999999999999999999999996 79999999999999999999853 8999999
Q ss_pred EEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccc
Q psy3765 276 ATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRR 326 (592)
Q Consensus 276 ~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~ 326 (592)
+|++++ +||++|||++++++|+||||+|||+||++||||||||+.|+||+
T Consensus 227 ~~V~~~-~dD~~dpi~~~~~si~DG~ivLsr~la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 227 PILTMP-NDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred EEEEcc-CCCcCcchHHHHHhhcceEEEEcHHHHhCCCCCCcCCcccccCC
Confidence 999988 68999999999999999999999999999999999999999996
No 38
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=1.5e-73 Score=613.92 Aligned_cols=347 Identities=23% Similarity=0.270 Sum_probs=303.4
Q ss_pred CCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCC--ccc--cccCccccC
Q psy3765 19 DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEK--PEL--SKNRTLFDN 94 (592)
Q Consensus 19 dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~--p~~--~~~r~~~d~ 94 (592)
+...+|......+--. ....|.+ +++.+.+++|+.++|||+|+.| +|+|+.+ +.. ...+.+++.
T Consensus 53 ~~~~~l~~~~~~~gi~-~g~~v~~-~~~~~~v~vg~~llGrv~d~~G----------~piD~~~~~~~~~~~~~~~~i~~ 120 (428)
T PRK08149 53 RERTILSLIGNAQGLS-RQVVLKP-TGKPLSVWVGEALLGAVLDPTG----------KIVERFDAPPTVGPISEERVIDV 120 (428)
T ss_pred CcEEEEEECCCccCCC-CCCEEEE-cCCcCEEEeChhhcCCeeCCCC----------CCcCCCCCCcccccccceeehhc
Confidence 4445555543333232 2346666 7999999999999999999999 4778775 321 134567877
Q ss_pred CCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhH
Q psy3765 95 LTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174 (592)
Q Consensus 95 l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~E 174 (592)
.|++|.+|.++++ ++.||+++||.++|+++|||++|||++|+|||||+++|+++ .++++ +|+++||+|++|
T Consensus 121 -~~~~~~~R~~i~e----~l~tGi~aid~ll~i~~Gq~i~I~G~sG~GKTTLl~~i~~~---~~~dv-~v~g~Ig~rg~e 191 (428)
T PRK08149 121 -APPSYAERRPIRE----PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEH---SEADV-FVIGLIGERGRE 191 (428)
T ss_pred -cCCcchhccCccc----cccCCcEEEeeeeeEecCCEEEEECCCCCChhHHHHHHhcC---CCCCe-EEEEEEeeCCcc
Confidence 5999999999998 89999999999999999999999999999999999998863 34554 457899999999
Q ss_pred HHHHHhhc-------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-C
Q psy3765 175 VTEMQRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-G 246 (592)
Q Consensus 175 v~e~~~~~-------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~ 246 (592)
+++|++++ ++++|++|+|+||.+|++++++|+++|||||++|+||||++|||||||+|+|||++++||+|+ +
T Consensus 192 v~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~ 271 (428)
T PRK08149 192 VTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARR 271 (428)
T ss_pred HHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHhHhhcCCCCccc
Confidence 99998877 579999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred CCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccc
Q psy3765 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRR 326 (592)
Q Consensus 247 Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~ 326 (592)
|||+++|+.+++++|||++. ++||||+|+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+
T Consensus 272 Gyp~~vfs~l~~l~ERag~~-~~GSIT~~~tVl~~-~dD~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~ 349 (428)
T PRK08149 272 GYPASVFDSLPRLLERPGAT-LAGSITAFYTVLLE-SEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRV 349 (428)
T ss_pred ccCccHHHHHHHHHHhccCC-CCCCceEEEEEEec-CCCCCCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccc
Confidence 99999999999999999998 58999999999998 57899999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 327 EELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 327 ~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
++.+++++|++.++++|++|++|+++++++++++|..++..+ ...+........|+.|..++
T Consensus 350 ~~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~~~~~d~ai~~~~~i~~fl~Q~~~~ 412 (428)
T PRK08149 350 FGQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYRRGENADNDRAMDKRPALEAFLKQDVAE 412 (428)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999987655444 44455555557888887754
No 39
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=3.3e-74 Score=601.42 Aligned_cols=315 Identities=26% Similarity=0.301 Sum_probs=287.9
Q ss_pred ccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccccceeeccccc
Q psy3765 48 FNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127 (592)
Q Consensus 48 ~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~Pi 127 (592)
+.+++|+.++|||+|+.| +|||+.++.....+++++. +|++|.+|.++++ ++.||+++||.++|+
T Consensus 2 ~~v~vg~~~lGrv~d~~G----------~pid~~~~~~~~~~~~i~~-~~~~~~~R~~~~~----~l~tGi~aiD~l~~i 66 (326)
T cd01136 2 LSVPVGDALLGRVLDAFG----------EPLDGKGPLGKEVRYPLLR-TPPNPLKRRPIDE----VLPTGVRAIDGLLTV 66 (326)
T ss_pred ceeeCCcccccCEECCCC----------cccCCCCCCCCCccccccC-CCcCHHHhcccee----EcCCCcEEEeeeeEE
Confidence 678999999999999999 5889887755556678876 6999999999998 799999999999999
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCCCCCHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTFDEPAYRHVQ 200 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~d~~~~~r~~ 200 (592)
++|||++|+|++|+|||+|+++|++.. ++++ +++++||||++|+++|+++. +++||++|+|+||.+|++
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~~~-~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT---TADV-NVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC---CCCE-EEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 999999999999999999999988753 3565 78899999999999999876 689999999999999999
Q ss_pred HHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCC-CCCCCCcccccchHHHhhcccccCCcceeeEEEEE
Q psy3765 201 VAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL-TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATAL 279 (592)
Q Consensus 201 ~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p-~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvl 279 (592)
++++|+++|||||++|+||||++|||||||+|+||+++++||+| ++|||+++|+.+++|+|||++. ++||||+|+|++
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~-~~GSIT~i~tv~ 221 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNS-DKGSITAFYTVL 221 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCC-CCCCeeeeeeee
Confidence 99999999999999999999999999999999999999999999 5899999999999999999997 579999999999
Q ss_pred eecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhcc
Q psy3765 280 IETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLF 359 (592)
Q Consensus 280 v~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~ 359 (592)
++ ||||+|||+|++++++||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|++|++++++++++
T Consensus 222 ~~-gdd~~dpi~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~~i~~g 300 (326)
T cd01136 222 VE-GDDLNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELLSAYQEVEDLIRIG 300 (326)
T ss_pred ec-CCCCCcchHHhhhhccceEEEEcCcHHHcCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 88 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhh-HHHhhccchhHHHh
Q psy3765 360 FIKRTIPVEK-NLLKDACMPLVLAE 383 (592)
Q Consensus 360 g~~~~~~~~k-~~L~~~~i~e~~l~ 383 (592)
+|+.+.+.+- ..+...-..+.|+.
T Consensus 301 ~y~~g~d~~~d~~i~~~~~i~~~l~ 325 (326)
T cd01136 301 AYKKGSDPEVDEAIKLLPKIEAFLK 325 (326)
T ss_pred CCCCCCCHHHHHHHHhHHHHHHHhC
Confidence 9988777552 23444333345544
No 40
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.9e-74 Score=618.50 Aligned_cols=330 Identities=21% Similarity=0.236 Sum_probs=301.1
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
..|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.+++. +|++|++|.++++ ++.||
T Consensus 81 ~~V~~-tg~~~~v~vg~~llGRViD~~G----------~plD~~g~~~~~~~~~i~~-~~~~~~~R~~i~~----~l~tg 144 (434)
T PRK08472 81 DKVFI-SKEGLNIPVGRNLLGRVVDPLG----------RPIDGKGAIDYERYAPIMK-APIAAMKRGLIDE----VFSVG 144 (434)
T ss_pred CEEEe-CCCceEEEcChhhcCCEECCCC----------CcccCCCCCCccccccccc-CCCCHHHcCCcce----eccch
Confidence 34445 6899999999999999999999 5788876654455667877 6999999999998 79999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc------cEEEEEeCC
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV------RGEVIASTF 191 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~------~~~vV~~t~ 191 (592)
+++||.++|+++||+++|+|++|+|||+|+++|+++.+ .++ ++|++||||++|+++|++.. ++++|++|+
T Consensus 145 i~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v-~vi~~iGergrev~e~~~~~l~~~l~~tvvV~ats 220 (434)
T PRK08472 145 VKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---API-KVVALIGERGREIPEFIEKNLGGDLENTVIVVATS 220 (434)
T ss_pred hHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCE-EEEEeeCccchhHHHHHHHHhcCcccceEEEEECC
Confidence 99999999999999999999999999999999997543 343 67899999999999998754 689999999
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccCCc
Q psy3765 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEEGG 270 (592)
Q Consensus 192 d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~~G 270 (592)
|+||..|+.++++|+++||||||+|+||||++||+||||+|+|||++++||+|+ +|||+++|+.+++|+||||+.+++|
T Consensus 221 ddsp~~R~~~~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~g~G 300 (434)
T PRK08472 221 DDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKG 300 (434)
T ss_pred CCCHHHhhHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCCCCc
Confidence 999999999999999999999999999999999999999999999999999995 7999999999999999999987799
Q ss_pred ceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccc
Q psy3765 271 SLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350 (592)
Q Consensus 271 SIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~ 350 (592)
|||+|+||+++ ||||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|+.|+
T Consensus 301 SIT~~~tVlv~-gdD~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~ 379 (434)
T PRK08472 301 SITAFFTVLVE-GDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLK 379 (434)
T ss_pred eeeEeEEEEec-CCCCCCCchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhcCCHHHHHHHHHHHHHHHhch
Confidence 99999999988 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 351 MTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 351 ~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
++++++++++|+.+.+.+ ...+......+.|+.|..++
T Consensus 380 e~e~li~~G~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~~ 418 (434)
T PRK08472 380 ENEVLIRIGAYQKGNDKELDEAISKKEFMEQFLKQNPNE 418 (434)
T ss_pred hHHHHHHhhCccCCCCHHHHHHHHhHHHHHHHhCCCCCC
Confidence 999999999999887754 44556666667888887754
No 41
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.3e-74 Score=617.97 Aligned_cols=316 Identities=16% Similarity=0.153 Sum_probs=288.2
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
..-|.+ +++++++++|+.++|||+|+.| +|+|++++... ...++.+ .|++|.+|.++++ +++|
T Consensus 64 g~~V~~-tg~~~~vpvg~~lLGRV~d~~G----------~PiD~~~~~~~-~~~~i~~-~~~~p~~R~~~~e----~l~T 126 (436)
T PRK02118 64 GDEVVF-LGRPMQVTYSESLLGRRFNGSG----------KPIDGGPELEG-EPIEIGG-PSVNPVKRIVPRE----MIRT 126 (436)
T ss_pred CCEEEe-CCCceEEEcCccccCCEEccCC----------cccCCCCCCCc-ceeecCC-CCCChHHcCCccc----cccc
Confidence 445666 7899999999999999999999 57888766543 3467766 6999999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
|||+||+|+|||||||++|||++|+|||+|+.+|+++.+ .++ +||++||||.+|+.+|++++ |+++|++
T Consensus 127 GIkaID~l~pl~rGQkigIF~gaGvgk~~L~~~ia~~~~---~~v-~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~ 202 (436)
T PRK02118 127 GIPMIDVFNTLVESQKIPIFSVSGEPYNALLARIALQAE---ADI-IILGGMGLTFDDYLFFKDTFENAGALDRTVMFIH 202 (436)
T ss_pred CcEEeecccccccCCEEEEEeCCCCCHHHHHHHHHHhhC---CCe-EEEEEeccchhHHHHHHHHHhhCCCcceEEEEEE
Confidence 999999999999999999999999999999999987643 366 78999999999999999998 6899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcC-CcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMK-KDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE 267 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G-~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~ 267 (592)
|+|+||.+|++++++|+|+|||||++| +||||++|||||||+|+||||+++||+|+ +||||++|+.+++++|||++++
T Consensus 203 ~adep~~~R~~~~~~AltiAEyfrd~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~ 282 (436)
T PRK02118 203 TASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFE 282 (436)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999987 99999999999999999999999999996 7999999999999999999987
Q ss_pred CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCC----HHHHHHHHHHH
Q psy3765 268 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQ----DDKLQKIWVLR 343 (592)
Q Consensus 268 ~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~----~~~~~~~~~lr 343 (592)
++||||+|+|+++| +||++|||+|++++|+||||+|||+| |||+.|+||+|+.+++ ++|++++++++
T Consensus 283 ~~GSITai~~V~~p-~DD~tdPi~d~~~silDGqIvLsR~l--------ID~l~S~SRl~~~v~g~~t~~~h~~~a~~l~ 353 (436)
T PRK02118 283 DGGSITIIAVTTMP-GDDVTHPVPDNTGYITEGQFYLRRGR--------IDPFGSLSRLKQLVIGKKTREDHGDLMNAMI 353 (436)
T ss_pred CCeeEEEEEEEEcC-CCCcCccHHHHHHHhcCcEEEecccc--------ccCccccccccccccCccccHHHHHHHHHHH
Confidence 89999999998876 78999999999999999999999999 9999999999999999 69999999999
Q ss_pred HHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhh
Q psy3765 344 KLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAET 384 (592)
Q Consensus 344 ~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q 384 (592)
++|++|+++++|+++ |+ +++++|+..|.....-|.++.+
T Consensus 354 ~~~a~y~e~~dli~i-G~-eLs~~d~~~l~~~~~~e~~~~~ 392 (436)
T PRK02118 354 RLYADSREAKEKMAM-GF-KLSNWDEKLLKFSELFESRLMD 392 (436)
T ss_pred HHHHHHHHHHHHHHh-hh-hcCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999997 64 9999999999944443444433
No 42
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=9e-74 Score=616.29 Aligned_cols=328 Identities=23% Similarity=0.285 Sum_probs=300.3
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
.-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++. ...+.++++ .|++|.+|..+++ ++.||
T Consensus 80 ~~V~~-tg~~~~v~vg~~llGrVid~~G----------~pld~~~~~-~~~~~~i~~-~~p~~~~r~~v~~----~l~tG 142 (433)
T PRK07594 80 QQVMA-LRRRHQVPVGEALLGRVIDGFG----------RPLDGRELP-DVCWKDYDA-MPPPAMVRQPITQ----PLMTG 142 (433)
T ss_pred CEEEe-CCCccEEEeChhhccCEEcccC----------CCcCCCCCC-ccccccccc-CCCCceeccCHhh----eeCCC
Confidence 44555 6899999999999999999999 478887663 334556766 5999999999998 79999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeC
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAST 190 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t 190 (592)
+++||.++||++|||++|+|++|+|||+|+++|+++ .+++. ++|++||||++|+.+|++.+ ++++|++|
T Consensus 143 i~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~---~~~d~-~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~t 218 (433)
T PRK07594 143 IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA---PDADS-NVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT 218 (433)
T ss_pred ceeeeeeeecCCCCEEEEECCCCCCccHHHHHhcCC---CCCCE-EEEEEECCCchHHHHHHHHhhccCCcceEEEEEEC
Confidence 999999999999999999999999999999988764 34565 78899999999999999886 68999999
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccCC
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEEG 269 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~~ 269 (592)
+|+|+.+|++++++|+|+|||||++|+||||++||+||||+|+||||+++||+|+ +|||+++|+.+++++|||++. ++
T Consensus 219 sd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~-~~ 297 (433)
T PRK07594 219 SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-EK 297 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCC-CC
Confidence 9999999999999999999999999999999999999999999999999999996 799999999999999999975 79
Q ss_pred cceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhcc
Q psy3765 270 GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349 (592)
Q Consensus 270 GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~ 349 (592)
||||+|+||+++ ||||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|++|
T Consensus 298 GSIT~~~tVl~~-gdD~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~~~~~~~~h~~~a~~~r~~la~y 376 (433)
T PRK07594 298 GSITAFYTVLVE-GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY 376 (433)
T ss_pred cchheeeeeeec-CCCCCCchHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccchhhCCHHHHHHHHHHHHHHHcc
Confidence 999999999998 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 350 TMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 350 ~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
+++++|+++++|..+++.+ ...++.....++|+.|...+
T Consensus 377 ~e~e~li~~G~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~~ 416 (433)
T PRK07594 377 QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE 416 (433)
T ss_pred hHHHHHHHhcCCCCCCCHHHHHHHHhhHHHHHHhCCCCCC
Confidence 9999999999999887666 66677777777888887754
No 43
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=1.2e-73 Score=582.77 Aligned_cols=261 Identities=20% Similarity=0.281 Sum_probs=243.0
Q ss_pred ccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccccceeeccccc
Q psy3765 48 FNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPI 127 (592)
Q Consensus 48 ~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~Pi 127 (592)
+.+++|+.++|||+|+.| +|+|+.++.....+++++. .|++|.+|.++++ +++||||+||+|+||
T Consensus 2 ~~vpvg~~lLGRvld~~G----------~piD~~~~~~~~~~~~i~~-~~p~~~~R~~i~e----~L~TGI~~ID~l~pi 66 (274)
T cd01132 2 ADVPVGEALLGRVVDALG----------NPIDGKGPIETKERRPIES-KAPGIIPRKSVNE----PLQTGIKAIDAMIPI 66 (274)
T ss_pred eEEECCHhhCCCEEccCC----------CCccCCCCcCcCceeeccC-CCCChhhcCCccc----ccccCCEEeeccCCc
Confidence 578999999999999999 5788876655555667877 5899999999998 899999999999999
Q ss_pred cccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCCCCCHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTFDEPAYRHV 199 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~d~~~~~r~ 199 (592)
|||||++|||++|+|||+| +++|++ ++++++.|||++||||++||+||++++ |+++|++|+|+||.+|+
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~---~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIIN---QKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHH---hcCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 9999999999999999999 566665 356789999999999999999999998 58999999999999999
Q ss_pred HHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc---CCcceeeE
Q psy3765 200 QVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE---EGGSLTII 275 (592)
Q Consensus 200 ~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~---~~GSIT~i 275 (592)
+++++|+++|||||++|+||||++|||||||+|+||+|++.||+|+ +|||+++|+.+++++|||++.. ++||||+|
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSIT~i 223 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTAL 223 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcceEEE
Confidence 9999999999999999999999999999999999999999999996 7999999999999999999874 58999999
Q ss_pred EEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCcccc
Q psy3765 276 ATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE 327 (592)
Q Consensus 276 ~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~ 327 (592)
+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+.
T Consensus 224 ~~V~~~-~dD~~~pi~~~~~~i~dg~ivLsr~la~~g~yPaId~l~S~SR~g 274 (274)
T cd01132 224 PIIETQ-AGDVSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274 (274)
T ss_pred EEEEcC-CCCcCcchHHHHHhhcCeEEEEcHHHHhCCCCCCcCCcccccCCC
Confidence 998877 689999999999999999999999999999999999999999973
No 44
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.4e-72 Score=601.88 Aligned_cols=324 Identities=20% Similarity=0.238 Sum_probs=294.8
Q ss_pred cccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCcccccc-CccccCCCCCCcccccccccccCCccccccceeec
Q psy3765 45 IRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKN-RTLFDNLTPLHPKKLLLLERNIESKENITGRIIDL 123 (592)
Q Consensus 45 ~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~-r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~ 123 (592)
.+.+.+++|+.++|||+|+.| +|+|+.++..... +.+++. +|++|.+|..+.+ ++.||+++||.
T Consensus 94 ~~~~~v~vg~~llGRV~d~~G----------~piDg~~~~~~~~~~~~i~~-~~p~~~~r~~v~~----~l~TGi~aID~ 158 (450)
T PRK06002 94 KGPLRIRPDPSWKGRVINALG----------EPIDGLGPLAPGTRPMSIDA-TAPPAMTRARVET----GLRTGVRVIDI 158 (450)
T ss_pred CCCceeecCcccccCEECCCC----------cCCCCCCCCCCCcceeeccC-CCCCCeEeecceE----EcCCCcEEeee
Confidence 468999999999999999999 5789886654433 457877 6999999999998 79999999999
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc------cEEEEEeCCCCCHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV------RGEVIASTFDEPAYR 197 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~------~~~vV~~t~d~~~~~ 197 (592)
+.||++|||++|+|++|+|||||+++|+.. ..++. ++|+++|||++|+++|.+.. ++++|++++|+||.+
T Consensus 159 L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l---~~pd~-gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~ 234 (450)
T PRK06002 159 FTPLCAGQRIGIFAGSGVGKSTLLAMLARA---DAFDT-VVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMM 234 (450)
T ss_pred eceecCCcEEEEECCCCCCHHHHHHHHhCC---CCCCe-eeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHH
Confidence 999999999999999999999999888753 23453 67899999999999987754 589999999999999
Q ss_pred HHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccc-cCCcceeeE
Q psy3765 198 HVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNI-EEGGSLTII 275 (592)
Q Consensus 198 r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~-~~~GSIT~i 275 (592)
|++++++|+++|||||++|+|||+++||+||||+|+|||++++||+|+ +|||+++|+.+++++|||++. +++||||+|
T Consensus 235 r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~ 314 (450)
T PRK06002 235 RRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGI 314 (450)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEE
Confidence 999999999999999999999999999999999999999999999995 799999999999999999986 569999999
Q ss_pred EEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccccHHHH
Q psy3765 276 ATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFT 355 (592)
Q Consensus 276 ~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~l 355 (592)
+|++++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|++|++++++
T Consensus 315 ~tvl~~-~dd~~dpI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~e~l 393 (450)
T PRK06002 315 FSVLVD-GDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQRKLVSRLKSMIARFEETRDL 393 (450)
T ss_pred EEEEec-CCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCcccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 356 VSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 356 i~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
+++++|+.+++.+ ...++......+|+.|...+
T Consensus 394 i~ig~y~~G~d~~~D~ai~~~~~i~~fL~Q~~~~ 427 (450)
T PRK06002 394 RLIGGYRAGSDPDLDQAVDLVPRIYEALRQSPGD 427 (450)
T ss_pred HHhhccccCCChHHHHHHHhHHHHHHHhCCCCCC
Confidence 9999999998855 44555566667888887744
No 45
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=8.6e-72 Score=600.61 Aligned_cols=324 Identities=22% Similarity=0.202 Sum_probs=289.9
Q ss_pred eECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccccc
Q psy3765 39 YLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG 118 (592)
Q Consensus 39 yV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGi 118 (592)
.|.+ +++.+++++|+.++|||+|+.| +|+|+.++.....+.++.. .|++|++|.++++ +++|||
T Consensus 82 ~V~~-~~~~~~v~vg~~llGrv~d~~G----------~pld~~~~~~~~~~~pi~~-~~~~~~~R~~i~e----~l~TGI 145 (434)
T PRK05922 82 EVLP-LRRPPSLHLSDHLLGRVLDGFG----------NPLDGKEQLPKTHLKPLFS-SPPSPMSRQPIQE----IFPTGI 145 (434)
T ss_pred EEEe-CCCCcEEEcChhhcCCEeCCCC----------CccCCCCCCCccceeeccc-CCCChhhcCCcce----ecCCCc
Confidence 3444 6899999999999999999999 5778776544444556766 5999999999998 899999
Q ss_pred ceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCC
Q psy3765 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTF 191 (592)
Q Consensus 119 raID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~ 191 (592)
|+||.++||++|||++|||++|+|||||+++|+++. +++ .++|++||+|++|+.+++++. ++++|++|+
T Consensus 146 r~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~---~~d-~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~ats 221 (434)
T PRK05922 146 KAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS---KST-INVIALIGERGREVREYIEQHKEGLAAQRTIIIASPA 221 (434)
T ss_pred eeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC---CCC-ceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECC
Confidence 999999999999999999999999999999988643 344 478899999999999999765 689999999
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccCCc
Q psy3765 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEEGG 270 (592)
Q Consensus 192 d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~~G 270 (592)
|+||.+|++++++|+++|||||++|+||||++||+||||+|+|||++++||+|+ +|||+++|+.+++|+||||+. ++|
T Consensus 222 d~~~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~-~~G 300 (434)
T PRK05922 222 HETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNN-DKG 300 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCC-CCc
Confidence 999999999999999999999999999999999999999999999999999996 799999999999999999995 699
Q ss_pred ceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccc
Q psy3765 271 SLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350 (592)
Q Consensus 271 SIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~ 350 (592)
|||+|+|||+++ + ++|||+|++++|+||||+|||+|++++ |||||++.|+||+|+.+++++|++.+.++|++|++|+
T Consensus 301 SIT~~~tVl~~~-~-~~dpi~d~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~ 377 (434)
T PRK05922 301 SITALYAILHYP-N-HPDIFTDYLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYH 377 (434)
T ss_pred ceeEEEEEEecC-C-CCCccccchhhhcCcEEEEcHHHHhCC-CCCcCCccccccCCccccCHHHHHHHHHHHHHHHHHH
Confidence 999999999995 3 789999999999999999999999887 9999999999999999999999999999999999999
Q ss_pred cHHHHHhccccccCChhh-hHHHhhccchhHHHhhcc
Q psy3765 351 MTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQT 386 (592)
Q Consensus 351 ~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~ 386 (592)
++++++++++|+.+++.+ ..........+.|+.|..
T Consensus 378 e~edli~~G~y~~g~d~~~d~a~~~~~~i~~fl~Q~~ 414 (434)
T PRK05922 378 EALDIIQLGAYVPGQDAHLDRAVKLLPSIKQFLSQPL 414 (434)
T ss_pred HHHHHHHhcCCCccCCHHHHHHHHhHHHHHHHhCCCC
Confidence 999999999999887543 223333444566666655
No 46
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2e-71 Score=598.32 Aligned_cols=331 Identities=22% Similarity=0.237 Sum_probs=299.1
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
..-|.+ +++.+.+++|+.|+|||+|+.| +|+|+.++.....+.++.+ +|++|.+|.++++ |++|
T Consensus 78 g~~v~~-~~~~~~v~vg~~llGrv~d~~G----------~pld~~~~~~~~~~~~~~~-~~~~p~~R~~~~~----~l~T 141 (434)
T PRK07196 78 GARVFP-SEQDGELLIGDSWLGRVINGLG----------EPLDGKGQLGGSTPLQQQL-PQIHPLQRRAVDT----PLDV 141 (434)
T ss_pred CCEEEE-CCCccEEEcCccccCCeeCcCC----------CCcCCCCCCCCCceeeccC-CCCChHHhccccc----cccc
Confidence 345556 6899999999999999999999 5788876654444556655 6999999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
|+++||.++|+++||+++|+|++|+|||||+++|++.. .+++ +++++||+|++|+.+|.++. +++++++
T Consensus 142 Gi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~---~~dv-~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~ 217 (434)
T PRK07196 142 GVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT---QADV-VVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAA 217 (434)
T ss_pred ceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc---CCCe-EEEEEEeeecHHHHHHHHHHhhhcccceEEEEEe
Confidence 99999999999999999999999999999999988643 3454 45789999999999998663 6899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
++|+|+..++.+++.++++||||+++|+||||++||+||||+|+|||++++||+|+ +|||+++|+.+++|+||||+.++
T Consensus 218 ~~d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~ 297 (434)
T PRK07196 218 PADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSG 297 (434)
T ss_pred cCCCChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999995 89999999999999999999877
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhc
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~ 348 (592)
+||||+|+||+++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|++
T Consensus 298 ~GSIT~~~tVl~~-~dD~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~~a~ 376 (434)
T PRK07196 298 NGTMTAIYTVLAE-GDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYAD 376 (434)
T ss_pred CEEeeeeeEEEcc-CCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhccCHHHHHHHHHHHHHHHH
Confidence 8999999999988 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 349 LTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 349 ~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
|+++++++++++|..+.+.+ +..+......+.|+.|..++
T Consensus 377 y~e~~~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e 417 (434)
T PRK07196 377 YMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQEVGH 417 (434)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHhHHHHHHHhCCCCCC
Confidence 99999999999998876654 55566555557888887644
No 47
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=1.8e-70 Score=591.90 Aligned_cols=340 Identities=24% Similarity=0.302 Sum_probs=302.5
Q ss_pred eECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCcccccc--CccccCCCCCCcccccccccccCCcccc
Q psy3765 39 YLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKN--RTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 39 yV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~--r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
.|.+ +++.+.+++|+.++|||+|+.| +|+|+.++..... +.++.+ .|++|++|.++++ +++|
T Consensus 68 ~V~~-tg~~~~v~vg~~lLGrViD~~G----------~plD~~~~~~~~~~~~~pi~~-~~~~~~~R~~i~~----~l~t 131 (422)
T TIGR02546 68 EVIP-TGRPLSIRVGEALLGRVLDGFG----------RPLDGKGELPAGEIETRPLDA-DPPPPMSRQPIDQ----PLPT 131 (422)
T ss_pred EEEE-CCCCceEEeChhhccCEeCCCC----------CcccCCCCCCCCCceeeeccC-CCcCHHHccCccc----ccCC
Confidence 4555 6899999999999999999999 4788876644332 567877 5999999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
|+++||.++|+++|||++|+|++|+|||+|+++|+... +++. ++|++||+|++|+++|+++. ++++|++
T Consensus 132 G~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~---~~~~-~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~ 207 (422)
T TIGR02546 132 GVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA---SADV-NVIALIGERGREVREFIEHHLGEEGRKRSVLVVS 207 (422)
T ss_pred CceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC---CCCE-EEEEEEccCCcCHHHHHHHHhccccccceEEEec
Confidence 99999999999999999999999999999999998743 3554 77899999999999998765 6899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
++|+|+.+|++++++|+++||||+++|+|||+++||+||||+|+|||++++||+|+ +|||+++|+.+++|+||||+. +
T Consensus 208 ~s~~p~~~r~~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~~-~ 286 (422)
T TIGR02546 208 TSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNG-E 286 (422)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcCC-C
Confidence 99999999999999999999999999999999999999999999999999999996 899999999999999999984 7
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhc
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~ 348 (592)
+||||+|+|++++ +||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|++
T Consensus 287 ~GSIT~~~tv~~~-~dd~~~pi~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~~~~~~~~~~~~a~~~~~~l~~ 365 (422)
T TIGR02546 287 KGSITALYTVLVE-GDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQVVSTEHRRAAGKLRRLLAT 365 (422)
T ss_pred CCceeEEEEEecc-CCCCCCCchhhhhccccEEEEEcHHHHhCCCCCccCCccccccchhhhCCHHHHHHHHHHHHHHHh
Confidence 9999999999988 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccccccccchhhhhHHHHHH
Q psy3765 349 LTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFA 405 (592)
Q Consensus 349 ~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~ 405 (592)
|+++++++++++|+.+.+.+ +..+......+.|+.|+.++ ++++.++-..+.
T Consensus 366 y~e~~~li~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~~-----~~~~~~~~~~l~ 418 (422)
T TIGR02546 366 YKEVELLIRLGEYQPGSDPETDDAIDKIDAIRAFLRQSTDE-----YSPYEETLEQLH 418 (422)
T ss_pred hHHHHHHHHhcCCcCCCCHHHHHHHHhHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Confidence 99999999999988666543 33333333355888886544 677777765443
No 48
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=1.1e-70 Score=595.52 Aligned_cols=329 Identities=23% Similarity=0.262 Sum_probs=295.2
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCC-ccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEK-PELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~-p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
.-|.+ +++.+++++|+.++|||+|+.| +|+|+.+ +.....+.++.+ .|++|.+|.++++ ++.|
T Consensus 86 ~~V~~-tg~~~~v~vg~~llGRVid~~G----------~plD~~~~~~~~~~~~~i~~-~~~~p~~R~~~~e----~l~T 149 (440)
T TIGR01026 86 SKVLA-TGEGLSIKVGDGLLGRVLDGLG----------KPIDGKGKFLDNVETEGLIT-APINPLKRAPIRE----ILST 149 (440)
T ss_pred CEEEe-CCCccEEEcChhhhhceecCCC----------cccCCCCCCCCCcccccccc-CCCChHHccCccc----cccc
Confidence 34555 6899999999999999999999 4788776 433334556766 5999999999998 7999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
|+++||.++||++|||++|+|++|+|||+|+++|++. .++++ .+|++||+|++|+.+|+++. ++++|++
T Consensus 150 Gi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~---~~~~~-~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN---TEADV-NVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCC---CCCCE-EEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 9999999999999999999999999999999988864 23554 57899999999999999765 6899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
|+|+||.+|++++++|+++|||||++|+||||++||+||||+|+||||+++||+|. +|||+++|+.+++|+|||+.- +
T Consensus 226 ~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~-~ 304 (440)
T TIGR01026 226 TSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGAS-G 304 (440)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccC-C
Confidence 99999999999999999999999999999999999999999999999999999995 799999999999999999964 7
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhc
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~ 348 (592)
+||||+|+|++++ ++||+|||+|++++++||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|++
T Consensus 305 ~GSIT~i~tVl~~-~~d~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~ 383 (440)
T TIGR01026 305 KGSITAFYTVLVE-GDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSK 383 (440)
T ss_pred CCeeeEEEEEEcc-CcCCCcchhhhhccccceEEEEecchhhCCccCccCCCcccccCccccCCHHHHHHHHHHHHHHHh
Confidence 8999999999988 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 349 LTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 349 ~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
|+++++|+++++|..+++.+ ...+......+.|+.|+.|+
T Consensus 384 y~e~~~li~ig~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~~ 424 (440)
T TIGR01026 384 YKDNEDLIRIGAYQRGSDRELDFAIAKYPKLERFLKQGINE 424 (440)
T ss_pred hHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999998655333 33455444448999998865
No 49
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.6e-69 Score=579.66 Aligned_cols=329 Identities=22% Similarity=0.252 Sum_probs=296.0
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
.-|.+ +++.+.+++||.++|||+|+.| +|+|+.++.....+.++++ +|++|.+|.++++ ++.||
T Consensus 80 ~~v~~-~~~~~~v~vg~~~lGrV~d~~G----------~piD~~~~~~~~~~~~i~~-~~~~~~~r~~i~~----~l~TG 143 (432)
T PRK06793 80 DSVTL-IAEDVVIPRGNHLLGKVLSANG----------EVLNEEAENIPLQKIKLDA-PPIHAFEREEITD----VFETG 143 (432)
T ss_pred CEEEE-CCCccEEEcCHhhccCEECcCC----------ccCCCCCCCCCcccccccC-CCCCchheechhh----ccCCC
Confidence 34445 6899999999999999999999 5788775543345567777 5999999999998 79999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeC
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAST 190 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t 190 (592)
+|+||.++|+++|||++|||++|+|||+|+++|+.+. +++. .++++||||++||.+|++.. ++++|++|
T Consensus 144 iraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~~~-gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~t 219 (432)
T PRK06793 144 IKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNA---KADI-NVISLVGERGREVKDFIRKELGEEGMRKSVVVVAT 219 (432)
T ss_pred CEEEeccceecCCcEEEEECCCCCChHHHHHHHhccC---CCCe-EEEEeCCCCcccHHHHHHHHhhhcccceeEEEEEC
Confidence 9999999999999999999999999999999998753 2443 46789999999999998744 58999999
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCCCCCCCcccccchHHHhhcccccCCc
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGG 270 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~~Gyp~~l~~~~~~~~erA~~~~~~G 270 (592)
+|+|+.+|++++++|+++|||||++|+||||++||+||||+|+||++++.||+|++|||+++++.+++++|||++. ++|
T Consensus 220 sd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERag~~-~~G 298 (432)
T PRK06793 220 SDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGKT-QKG 298 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHHHHhccC-CCc
Confidence 9999999999999999999999999999999999999999999999999999998899999999999999999997 699
Q ss_pred ceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccc
Q psy3765 271 SLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350 (592)
Q Consensus 271 SIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~ 350 (592)
|||+++|++++ +|||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|+.|+
T Consensus 299 SiT~~~tvlv~-~dD~~dpI~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~la~y~ 377 (432)
T PRK06793 299 SITGIYTVLVD-GDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYK 377 (432)
T ss_pred ceEEEEEEEec-CCCCCCcchHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCccccCCHHHHHHHHHHHHHHHhCh
Confidence 99999999998 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhccccccCChhh-hHHHh-hccchhHHHhhcccc
Q psy3765 351 MTSFTVSLFFIKRTIPVE-KNLLK-DACMPLVLAETQTID 388 (592)
Q Consensus 351 ~~~~li~l~g~~~~~~~~-k~~L~-~~~i~e~~l~q~~f~ 388 (592)
++++++++++|.+++..+ ...+. ......+|+.|...+
T Consensus 378 e~e~~i~~g~y~~g~~~~~d~ai~~~~~~i~~fl~Q~~~~ 417 (432)
T PRK06793 378 ENELYFKLGTIQENAENAYIFECKNKVEGINTFLKQGRSD 417 (432)
T ss_pred HHHHHHHhCCccCCCCHHHHHHHHHhHHHHHHHhCCCCCC
Confidence 999999999999886655 22333 455556888887643
No 50
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.4e-67 Score=567.96 Aligned_cols=328 Identities=23% Similarity=0.288 Sum_probs=293.8
Q ss_pred eECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccccc
Q psy3765 39 YLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITG 118 (592)
Q Consensus 39 yV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGi 118 (592)
-|.+ +++.+++++|+.++|||+|+.| +|+|+.++.....+.++++ .|++|.+|.++++ +++||+
T Consensus 83 ~V~~-tg~~~~v~vg~~llGRv~d~~G----------~plD~~~~~~~~~~~~i~~-~~p~p~~R~~i~~----~l~tg~ 146 (438)
T PRK07721 83 LVEA-TGKPLEVKVGSGLIGQVLDALG----------EPLDGSALPKGLAPVSTDQ-DPPNPLKRPPIRE----PMEVGV 146 (438)
T ss_pred EEEE-CCCccEEEechhhcCCEECcCC----------CccCCCCCCCccccCCccC-CCCChhhccCccc----ccccch
Confidence 4445 6899999999999999999999 4778776433334456766 5999999999998 799999
Q ss_pred ceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCC
Q psy3765 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTF 191 (592)
Q Consensus 119 raID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~ 191 (592)
++||.++|+++||+++|+|++|+|||+|+++|+... +++. .++.++|||++|+.+|+++. ++++|++|+
T Consensus 147 ~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~---~~~~-gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 147 RAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT---SADL-NVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc---CCCe-EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 999999999999999999999999999999888643 3443 67889999999999997763 689999999
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccCCc
Q psy3765 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEEGG 270 (592)
Q Consensus 192 d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~~G 270 (592)
|+|+.+|++++++|+++|||||++|+||||++||+||||+|+||||+++||+|+ .|||+++++.+++++||+++. ++|
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~-~~G 301 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTN-ASG 301 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCC-CCC
Confidence 999999999999999999999999999999999999999999999999999995 899999999999999999863 689
Q ss_pred ceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccc
Q psy3765 271 SLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350 (592)
Q Consensus 271 SIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~ 350 (592)
|||+|+|++++ ++||++||+|++++++||||+||++|+++||||||||+.|+||+++.+++++|++.++++|++|+.|+
T Consensus 302 sIT~~~TVlv~-~hdm~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~ 380 (438)
T PRK07721 302 SITAFYTVLVD-GDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLSTYQ 380 (438)
T ss_pred CeeeEEEEEEE-CCCCCchhhhhEEEecCEEEEEeccHHHCCCCCccCCcccccccccccCCHHHHHHHHHHHHHHHHhH
Confidence 99999999998 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 351 MTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 351 ~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
++++++++++|.+++..+ ...++.....++|+.|..++
T Consensus 381 e~~~li~~g~y~~g~~~~~d~a~~~~~~~~~fl~Q~~~~ 419 (438)
T PRK07721 381 NSEDLINIGAYKRGSSREIDEAIQFYPQIISFLKQGTDE 419 (438)
T ss_pred HHHHHHHhhCCcCCCCHHHHHHHHhHHHHHHHhCCCCCC
Confidence 999999999999988443 44455444447888887644
No 51
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.8e-67 Score=552.67 Aligned_cols=358 Identities=18% Similarity=0.195 Sum_probs=324.1
Q ss_pred CCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCC
Q psy3765 18 PDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTP 97 (592)
Q Consensus 18 ~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~p 97 (592)
.|..|.+-..+++-....+.|.. ++|.+++|+|+.++|||+|+.| +||||..|.....+.+++.. +
T Consensus 68 ~d~VG~vi~g~~~~i~eG~~v~~---Tg~i~~Vpvg~~llGRVVn~lG----------~pidgkg~i~~~~~~~~e~~-A 133 (504)
T COG0056 68 EDSVGAVILGDYSDIKEGDEVKR---TGRILEVPVGEELLGRVVDALG----------NPIDGKGPIDATKTRPVEKK-A 133 (504)
T ss_pred ccceeEEEecCCccccCCcEEEe---eCceEEEecchhhcceeecCCC----------CccCCCCCccccccCccccc-c
Confidence 46666677765565555555544 5699999999999999999999 58999999988888888774 7
Q ss_pred CCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 98 LHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 98 i~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
+.-++|.++++ |++|||++||+|+|||||||.+|+|+++||||.++ |.+.+||+..+++||||+||++.+.|..
T Consensus 134 pgv~~RksV~e----PlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIA--idtIiNQk~~~v~CIYVAIGQK~stva~ 207 (504)
T COG0056 134 PGVMDRKSVNE----PLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIA--IDTIINQKGSGVKCIYVAIGQKRSTVAN 207 (504)
T ss_pred CceecccccCc----hhhhhhHHHhhhcccCCCceEEEeccCcCCcchhh--HHHHHhcccCCcEEEEEEcccchHHHHH
Confidence 77899999998 89999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhhc-------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCC
Q psy3765 178 MQRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVD 249 (592)
Q Consensus 178 ~~~~~-------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp 249 (592)
+++++ .|+||++++++|+..+|.+||++|++|||||++|+|||+++||||+||.||||+|+.++|+|. ..||
T Consensus 208 vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyP 287 (504)
T COG0056 208 VVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYP 287 (504)
T ss_pred HHHHHHHcCCccceEEEEecCCcchhhhhhhhhhhhHHHHHHHhcCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCC
Confidence 99998 489999999999999999999999999999999999999999999999999999999999996 6999
Q ss_pred CcccccchHHHhhccccc---CCcceeeEEEEEeecCC-CCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCcc
Q psy3765 250 SNALQRPKRFFGAARNIE---EGGSLTIIATALIETGS-RMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325 (592)
Q Consensus 250 ~~l~~~~~~~~erA~~~~---~~GSIT~i~tvlv~tg~-d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR 325 (592)
+++|+.++|++|||+++. ++||||+++ +++|.+ |++..||.|+.|||||||+|+.+|+++|+.||||+..|+||
T Consensus 288 GDVFYlHSrLLERAakl~~e~g~GSiTALP--IIETqagDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSR 365 (504)
T COG0056 288 GDVFYLHSRLLERAAKLSDELGGGSITALP--IIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSR 365 (504)
T ss_pred CceeehhHHHHHHHHhhccccCCCceEeee--eEEeccCceeeecccceEEecCCcEEeehhhhhcCCCccccCCceeec
Confidence 999999999999999984 579999995 567654 99999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHHHH
Q psy3765 326 REELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMF 404 (592)
Q Consensus 326 ~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~ 404 (592)
+....+.+...+++..+|..|++|+|++++.+.+- ++.+..+..|++-....+.+.|..|+ ..+..+|-++.
T Consensus 366 vGssAQ~kamkkvag~lrl~laqYrel~afsqf~s--dLd~~T~~~l~~G~r~~ellkQ~~~~-----p~sv~~qv~il 437 (504)
T COG0056 366 VGSAAQIKAMKKVAGSLRLILAQYRELEAFSQFGS--DLDKATRKQLERGKRLTELLKQPQYS-----PLSVEEQVLIL 437 (504)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhCHHHHHHHHccHHHHHHhcCCCCC-----CccHHHHHHHH
Confidence 99999999999999999999999999999999876 77788899999777777888898865 44455555543
No 52
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.1e-65 Score=552.74 Aligned_cols=328 Identities=21% Similarity=0.251 Sum_probs=296.2
Q ss_pred ECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCC--CCccc-cccCccccCCCCCCcccccccccccCCcccc
Q psy3765 40 LSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNG--EKPEL-SKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 40 V~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing--~~p~~-~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
|.+ +++.+.+++|+.++|||+|+.| +|+|+ .++.. ...+.++.+ .|++|++|.++++ |++|
T Consensus 87 V~~-~g~~~~v~vg~~llGrv~d~~G----------~pld~~~~~~~~~~~~~~~i~~-~~~~~~~R~~~~e----~l~T 150 (442)
T PRK06315 87 VIP-TGLPLHIRAGNGLLGRVLNGLG----------EPIDTETKGPLENVDETYPIFR-APPDPLHRAKLRT----ILST 150 (442)
T ss_pred EEe-CCCccEEEecccccCCEEeccC----------cccccccCCCcccccceeeeec-CCCChHHcccccc----cccc
Confidence 444 5899999999999999999999 46776 44432 334456766 5999999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
|+|+||.++|+++|||++|+|++|+|||+|+++|++... ..+. .|+++||||++|+.++.++. ++++|++
T Consensus 151 Gi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~--~~~~-~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAE--EADV-NVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEeccccccCCcEEEEECCCCCCcchHHHHhhcccc--cCCc-eEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 999999999999999999999999999999999987542 1243 56799999999999988763 5899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
|++++|..++.++++++++|||||++|++||+++||+||||+|+|||++++||+|. .||||+.|+.+++++||||+. +
T Consensus 228 ts~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~-~ 306 (442)
T PRK06315 228 TSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGAS-D 306 (442)
T ss_pred CCCCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCC-C
Confidence 99999999999999999999999999999999999999999999999999999995 799999999999999999996 6
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhc
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~ 348 (592)
+||||+|+||+++ |||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++++|++.++++|++|+.
T Consensus 307 ~GSITai~tVl~~-gdD~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~ 385 (442)
T PRK06315 307 KGTITAFYTVLVA-GDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAK 385 (442)
T ss_pred CcceeeeEEEEec-CCCCCcccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccchhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999986 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccc
Q psy3765 349 LTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTID 388 (592)
Q Consensus 349 ~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~ 388 (592)
|+++++++++++|.++++.+ +..+......+.|+.|...+
T Consensus 386 y~e~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e 426 (442)
T PRK06315 386 YKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE 426 (442)
T ss_pred hhhhHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999988854 66677666667888887654
No 53
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=3.3e-66 Score=541.34 Aligned_cols=228 Identities=21% Similarity=0.238 Sum_probs=210.7
Q ss_pred cCccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEE
Q psy3765 88 NRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167 (592)
Q Consensus 88 ~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~l 167 (592)
.++++... ++++ +|..+++ |++||+|+||+|+|||||||++|||++|+|||+|+++|+++. +.++ |||++
T Consensus 121 ~~~Pv~~~-~P~~-~r~~~~~----pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~---~~dv-vVyv~ 190 (369)
T cd01134 121 QKWPVRQP-RPVK-EKLPPNE----PLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS---NSDI-VIYVG 190 (369)
T ss_pred eeeecccC-CCcc-ccCCCCC----chhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhCC---CCCE-EEEEE
Confidence 34566653 5555 8888887 899999999999999999999999999999999999999853 4565 78999
Q ss_pred eccchhHHHHHHhhc--------------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHH
Q psy3765 168 IDERPEEVTEMQRSV--------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY 233 (592)
Q Consensus 168 IGeR~~Ev~e~~~~~--------------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~ 233 (592)
||||++||+|+++++ ||++|+||||+|+.+|++++|+|+|+||||||+|+|||+++||+||||+|+
T Consensus 191 iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~ 270 (369)
T cd01134 191 CGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEAL 270 (369)
T ss_pred eCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHH
Confidence 999999999999985 699999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCC-CCCCCcccccchHHHhhccccc------CCcceeeEEEEEeecCCCCCcccccccccccCeEEEech
Q psy3765 234 NTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE------EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306 (592)
Q Consensus 234 reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~------~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr 306 (592)
||||+++||+|+ +|||+|+++++++||||||+++ ++||||+|++++ ++|+|++|||++++++++||||+|||
T Consensus 271 REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~V~-~~g~D~sdPV~~~t~~i~dg~i~Lsr 349 (369)
T cd01134 271 REISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVS-PPGGDFSEPVTQATLRIVQVFWGLDK 349 (369)
T ss_pred HHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEEEE-ccCCCcCcchHHhhHhhcceEEEECH
Confidence 999999999996 7999999999999999999973 579999999866 55899999999999999999999999
Q ss_pred HhHhcCCCCCCcCCCCCccc
Q psy3765 307 RLAEKRVYPAINLNKSGTRR 326 (592)
Q Consensus 307 ~La~~gifPAID~l~S~SR~ 326 (592)
+||++||||||||+.|+||+
T Consensus 350 ~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 350 KLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred HHHhCCCCCCcCCcccccCC
Confidence 99999999999999999996
No 54
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.7e-65 Score=531.61 Aligned_cols=330 Identities=15% Similarity=0.200 Sum_probs=294.5
Q ss_pred eECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccc--cCccccCCCCCCcccccccccccCCcccc
Q psy3765 39 YLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSK--NRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 39 yV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~--~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
.|.- +++++++|||..++||++|..| +|||...|...+ +++++... ++. ......+. +.++|
T Consensus 70 ~v~d-tg~pi~VPVG~~~lgri~nvlG----------~~iD~~~~~~~~~~~~~~Ih~~-~p~-~~e~~~~~---EIleT 133 (468)
T COG0055 70 EVID-TGKPISVPVGKGTLGRIFNVLG----------EPIDEKGPIKAEDFEKWPIHRK-APS-FEELSTKT---EILET 133 (468)
T ss_pred EEec-CCCceEEecchhhcccchhccC----------CcccccCCCCccccceeeccCC-CCc-hhhcccch---hhhhh
Confidence 3444 7899999999999999999999 567766555433 45555432 222 12222222 38999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
|||+||+|+|+.||+|+|+||++|+|||+|+++|++++++.|.+. .||+++|||.||..|+++++ ++++|.+
T Consensus 134 GIKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~-SVFaGvGERtREGndLy~Em~es~vl~ktalv~g 212 (468)
T COG0055 134 GIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGY-SVFAGVGERTREGNDLYHEMKESGVLDKTALVFG 212 (468)
T ss_pred CceEEEEecccccCceeeeeccCCccceeeHHHHHHHHHHHcCCe-EEEEeccccccchHHHHHHHHhcCCCCceeEEEe
Confidence 999999999999999999999999999999999999999999986 78999999999999999998 6899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE 267 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~ 267 (592)
++|+||+.|.+++.+++|+|||||| +|+|||+++|++.||.+|.+|+|..+||+|| -||+|.+.+....+.||....
T Consensus 213 QMNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItst- 291 (468)
T COG0055 213 QMNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST- 291 (468)
T ss_pred ecCCCCcceeeehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhcC-
Confidence 9999999999999999999999997 5999999999999999999999999999998 699999999999999997774
Q ss_pred CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccc-cCCCCCHHHHHHHHHHHHHH
Q psy3765 268 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRR-EELLIQDDKLQKIWVLRKLL 346 (592)
Q Consensus 268 ~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~-~~~~~~~~~~~~~~~lr~~l 346 (592)
+.||||+++++++|+ ||++||.+..+.+++|..++|||++|+.|+|||||||.|.||. .+.+++++|++++.++++.|
T Consensus 292 k~GSITSiQavyvPa-DDlTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iL 370 (468)
T COG0055 292 KKGSITSVQAVYVPA-DDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSIL 370 (468)
T ss_pred CCCceEEEEEEEecc-ccCCCcchhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCcccccHHHHHHHHHHHHHH
Confidence 799999999999996 8999999999999999999999999999999999999999997 48899999999999999999
Q ss_pred hccccHHHHHhccccccCChhhhHHHhhccchhHHHhhccc
Q psy3765 347 YSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTI 387 (592)
Q Consensus 347 ~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f 387 (592)
++|++++++|.++|.++++++||..-.+.-..+-|+-|+-|
T Consensus 371 qrYkeLqDIIaILGmdELseedk~~V~rArki~~FlSQpF~ 411 (468)
T COG0055 371 QRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFF 411 (468)
T ss_pred HHHHHHHHHHHHhCchhcChhHHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999999888855555667666654
No 55
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=5.5e-64 Score=583.42 Aligned_cols=248 Identities=19% Similarity=0.163 Sum_probs=234.9
Q ss_pred EEEEEeccchhHHHHHHhhc--------------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhH
Q psy3765 163 MIVMLIDERPEEVTEMQRSV--------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITR 228 (592)
Q Consensus 163 ~I~~lIGeR~~Ev~e~~~~~--------------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr 228 (592)
|||++||||++||+||++++ ||++|+||||+|+.+|++++|+|+|+||||||||+|||+++||+||
T Consensus 685 ~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd~G~~Vll~~Ds~sR 764 (1017)
T PRK14698 685 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSR 764 (1017)
T ss_pred EEEEeeccchHHHHHHHHHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccchH
Confidence 67899999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc------CCcceeeEEEEEeecCCCCCcccccccccccCeE
Q psy3765 229 LARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE------EGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301 (592)
Q Consensus 229 ~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~------~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~ 301 (592)
||+|+||||+++||+|+ +|||+|+++++++||||||+++ ++||||+|+||+++ |||++|||++++++|+|||
T Consensus 765 ~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT~i~~V~~~-g~D~s~Pv~~~~~~i~dg~ 843 (1017)
T PRK14698 765 WAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPP-GGDFSEPVVQNTLRVVKVF 843 (1017)
T ss_pred HHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceEEEEEEECC-CCCCCCcHHHHHHHHhCcE
Confidence 99999999999999996 7999999999999999999974 68999999998765 7899999999999999999
Q ss_pred EEechHhHhcCCCCCCcCCCCCccccCCC-------CCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-
Q psy3765 302 VHLERRLAEKRVYPAINLNKSGTRREELL-------IQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK- 373 (592)
Q Consensus 302 i~Ldr~La~~gifPAID~l~S~SR~~~~~-------~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~- 373 (592)
|+|||+||++||||||||+.|+||+++.+ ++++|.+.+++++++|++|++++++++++|.+.+++.++..++
T Consensus 844 i~L~~~La~~g~~PAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~l~g~~~l~~~d~~~~~~ 923 (1017)
T PRK14698 844 WALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPDALPERERAILLV 923 (1017)
T ss_pred EecCHHHHhCCCCCCcCcccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999887 7899999999999999999999999999998889999999998
Q ss_pred hccchhHHHhhcccccccccchhhhhHHHHHHHHHhhcc
Q psy3765 374 DACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTK 412 (592)
Q Consensus 374 ~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~ 412 (592)
.+.+++.|++|+.|+ .+|.+|++.||..++..+....+
T Consensus 924 ~~~i~e~fL~Q~~~~-~~d~~~~~~~~~~~l~~i~~~~~ 961 (1017)
T PRK14698 924 ARMLREDYLQQDAFD-EVDTYCPPEKQVTMMRVLLNFYD 961 (1017)
T ss_pred hHHHHhccCCCCCCC-ccccCCCHHHHHHHHHHHHHHHH
Confidence 788889999999998 99999999999998877765544
No 56
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=1.2e-62 Score=488.57 Aligned_cols=204 Identities=33% Similarity=0.487 Sum_probs=190.8
Q ss_pred cccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEE
Q psy3765 116 ITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIA 188 (592)
Q Consensus 116 TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~ 188 (592)
||||+||+|+|||||||++|||++|+|||+|+++|+++.++ ++ +||++||||++|+++|++++ ++++|+
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~---d~-~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~ 76 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQDA---DV-VVYALIGERGREVTEFIEELKGEGALERTVVVA 76 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCTT---TE-EEEEEESECHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhcccc---cc-eeeeeccccchhHHHHHHHHhhccccccccccc
Confidence 89999999999999999999999999999999999987643 44 48999999999999999998 589999
Q ss_pred eCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccc-
Q psy3765 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNI- 266 (592)
Q Consensus 189 ~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~- 266 (592)
+|+|+|+.+|++++++|+++|||||++|+|||+++||+||||+|+||+++.+||+|. +|||+++|+.+++|||||+++
T Consensus 77 ~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~ERag~~~ 156 (215)
T PF00006_consen 77 ATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYERAGKVN 156 (215)
T ss_dssp EETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHTTSEEBS
T ss_pred ccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999995 899999999999999999999
Q ss_pred --cCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCc
Q psy3765 267 --EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGT 324 (592)
Q Consensus 267 --~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~S 324 (592)
+++||||+|+|++++ ++|++|||++++++++||||+|||+||++||||||||+.|+|
T Consensus 157 ~~~~~GSIT~~~~v~~~-~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 157 SEEGGGSITAIPTVLVP-GDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp TTTTSEEEEEEEEEEES-TTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred cccCCceeeeecccccc-cccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 789999999999987 578999999999999999999999999999999999999987
No 57
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=4.6e-62 Score=509.91 Aligned_cols=354 Identities=18% Similarity=0.151 Sum_probs=325.8
Q ss_pred EEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccc
Q psy3765 13 SLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLF 92 (592)
Q Consensus 13 ~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~ 92 (592)
|||+ ..+...++--...+--+..|.-|.+ +++.+++++++.++||++|++| +||||+|....+++.++
T Consensus 46 Vle~-~~~~a~vQVfegT~Gl~~~~t~vrF-~g~~l~i~vs~dllGRifnG~G----------~PiDggp~i~~e~~~dI 113 (463)
T COG1156 46 VLEV-RGDKAVVQVFEGTSGLDTKGTTVRF-TGETLKIPVSEDLLGRIFNGSG----------KPIDGGPEIVPEDRLDI 113 (463)
T ss_pred Eeec-cCceEEEEEeecccCCCCCCceEEE-eCceEEEeecHHhhhhhhcCCC----------CcCCCCCcCCCCccccc
Confidence 5554 3445566665666667778888999 8999999999999999999999 68999988888899999
Q ss_pred cCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcC--CCeEEEEEEecc
Q psy3765 93 DNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNH--SEAIMIVMLIDE 170 (592)
Q Consensus 93 d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~--~~~~~I~~lIGe 170 (592)
.+ .|+||..|.++++ +++|||++||.|+++.||||+.||+++|..++.|+.|||++..... .++.+||+++|-
T Consensus 114 ~g-~~~NP~aR~yP~e----fIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~LaaqIarQA~v~~~~e~favVfaamGi 188 (463)
T COG1156 114 NG-APINPYARIYPEE----FIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVDGEEEEFAVVFAAMGI 188 (463)
T ss_pred CC-CCCCchhhhChhh----HhhcCccHHhhhhhhhcccccccccCCCCchHHHHHHHHHhcccCCCccceeEEEeecCc
Confidence 88 5999999999998 8999999999999999999999999999999999999999877654 577789999999
Q ss_pred chhHHHHHHhhc-------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHH-HcCCcEEEeccchhHHHHHHhhhccCCCC
Q psy3765 171 RPEEVTEMQRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLV-EMKKDVIILLDSITRLARAYNTVIPASGK 242 (592)
Q Consensus 171 R~~Ev~e~~~~~-------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r-~~G~dVlll~Dsltr~A~A~reis~~~Ge 242 (592)
..+|...|.+++ |++++.+.+|+|+.+|+..|.+|+|.||||+ ++++||||++.|||+||+|+||||.+.+|
T Consensus 189 t~eea~fF~~~fe~tGal~r~vlflnlA~dp~vEri~tPr~aLt~AEylA~e~~~hVLVilTDMTnyceALREIsaaree 268 (463)
T COG1156 189 THEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREE 268 (463)
T ss_pred cHHHHHHHHHHHHhhhhhhhhHhhhhccCCCceeEecchhHHHHHHHHHhccCCceEEEEEcchhHHHHHHHHHHhhhcc
Confidence 999999999998 6899999999999999999999999999999 78999999999999999999999999999
Q ss_pred CCC-CCCCCcccccchHHHhhcccccC-CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCC
Q psy3765 243 VLT-GGVDSNALQRPKRFFGAARNIEE-GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLN 320 (592)
Q Consensus 243 ~p~-~Gyp~~l~~~~~~~~erA~~~~~-~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l 320 (592)
.|. +|||+|+|++++.+||||+.+++ +||||+++ +|++|+||++|||||++.+|++|||+|||+|.++|+||+||++
T Consensus 269 VPgrRGYPGymYTdLatiYErAg~i~g~~GSiTqip-IlTMP~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vl 347 (463)
T COG1156 269 VPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQIP-ILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVL 347 (463)
T ss_pred CCCcCCCcchHHHHHHHHHHhhceeccCCCceEEEE-eeecCCCCcCCCCCcccceeccceEEEEhhcccCCcCCCcccc
Confidence 996 79999999999999999999986 99999999 6999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCC-----HHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhccchh-HHHhh
Q psy3765 321 KSGTRREELLIQ-----DDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPL-VLAET 384 (592)
Q Consensus 321 ~S~SR~~~~~~~-----~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e-~~l~q 384 (592)
.|+||+|+..++ ++|-+.++++.+.|++.+++.++..++|.+.++.+|+.+|+-...-| .|..|
T Consensus 348 pSLSRL~~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~avvge~aLs~~D~~~l~F~d~FE~~fi~q 417 (463)
T COG1156 348 PSLSRLMKDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVGEEALSERDRKYLKFADLFEQRFIKQ 417 (463)
T ss_pred ccHHHHhhcccCCCccccccHHHHHHHHHHHhcchhHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHhc
Confidence 999999998887 69999999999999999999999999999999999999999444334 44444
No 58
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=9e-60 Score=504.29 Aligned_cols=314 Identities=21% Similarity=0.192 Sum_probs=288.1
Q ss_pred cCccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEE
Q psy3765 88 NRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167 (592)
Q Consensus 88 ~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~l 167 (592)
.++|+-- |..-.++++++. |+.||.|+||.|+|+.||++.+|.||.|+|||++.+++++..+. + .+||++
T Consensus 188 ~~WPVR~--~rp~~eKl~p~~----Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKTV~qh~laK~sda---d-iVVyig 257 (588)
T COG1155 188 TTWPVRK--ARPVKRKLPPEI----PLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVSQHTLSKLADG---D-IVIYVG 257 (588)
T ss_pred EeccccC--CccccccCCCCC----cccccceeehhhcccccCccccccCCCCCCcEehhhhhhhhccC---C-EEEEEe
Confidence 3444432 333356666665 89999999999999999999999999999999999999986543 3 366899
Q ss_pred eccchhHHHHHHhhc--------------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHH
Q psy3765 168 IDERPEEVTEMQRSV--------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY 233 (592)
Q Consensus 168 IGeR~~Ev~e~~~~~--------------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~ 233 (592)
||||++|++|++.+| ||++|+||++||.+.|+++.|+|+|+||||||||+||+++.||.+|||+|+
T Consensus 258 CGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAl 337 (588)
T COG1155 258 CGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEAL 337 (588)
T ss_pred cCCccchHHHHHHhCccccCCCCCCcccceeeEeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHHHH
Confidence 999999999999998 699999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCC-CCCCCcccccchHHHhhccccc------CCcceeeEEEEEeecCCCCCcccccccccccCeEEEech
Q psy3765 234 NTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE------EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306 (592)
Q Consensus 234 reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~------~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr 306 (592)
||||..++|+|. .|||+|+-+++++||||||.+. ..||+|++++ ..|+|+|+++|++++|+.+...+|.||+
T Consensus 338 REisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~ga-VSPpGGdfSEPVtq~Tlriv~vFw~Ld~ 416 (588)
T COG1155 338 REISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGA-VSPPGGDFSEPVTQNTLRVVRVFWALDA 416 (588)
T ss_pred HHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecC-CCCCCCCcCcccchheeeeeeeecccch
Confidence 999999999997 7999999999999999999984 3599999996 6799999999999999999999999999
Q ss_pred HhHhcCCCCCCcCCCCCccccC-------CCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccch
Q psy3765 307 RLAEKRVYPAINLNKSGTRREE-------LLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMP 378 (592)
Q Consensus 307 ~La~~gifPAID~l~S~SR~~~-------~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~ 378 (592)
+||+++|||||||+.|+|.+-+ .-+++++-+...+++++|++..+++.+++++|++.+++.++..|. ++.++
T Consensus 417 ~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ir 496 (588)
T COG1155 417 ALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIR 496 (588)
T ss_pred hhhhcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHH
Confidence 9999999999999999999964 346788999999999999999999999999999999999999999 99999
Q ss_pred hHHHhhcccccccccchhhhhHHHHHHHHHhhccc
Q psy3765 379 LVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKI 413 (592)
Q Consensus 379 e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~~ 413 (592)
+.|+|||+|+ .+|.||++.||..|++++..+.+.
T Consensus 497 e~fLqQnafd-~vD~~~~~~kq~~mm~~i~~~~~~ 530 (588)
T COG1155 497 EDFLQQNAFD-EIDAYCSLRKQYLMLKAIMEINDY 530 (588)
T ss_pred HHHHhhcccC-cccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999877654
No 59
>KOG1352|consensus
Probab=100.00 E-value=6.8e-60 Score=489.97 Aligned_cols=389 Identities=17% Similarity=0.183 Sum_probs=319.7
Q ss_pred EeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECcc------------ccccccCCCCCeEEEE-----EE----------
Q psy3765 9 FGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPS------------QIRRFNLHTGDFVEGE-----IR---------- 61 (592)
Q Consensus 9 ~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~------------~~r~~~L~vGd~l~Gr-----V~---------- 61 (592)
.+.|+++.+.||. .|+. +.......+||+|.+ ..-+.++++||.+.|- |+
T Consensus 93 LGPGimgsIfDGI--QRPL-k~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~ 169 (618)
T KOG1352|consen 93 LGPGIMGSIFDGI--QRPL-KDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKIL 169 (618)
T ss_pred eCcchhhhhhhhh--hhhH-HHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceee
Confidence 4679999888986 7776 556667788999875 2345668999988763 32
Q ss_pred -CCCCCccccceeeeeecCCCCccccccCccccCCCCCC-cccccccccccC--------Cccccccceeeccccccccc
Q psy3765 62 -VPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLH-PKKLLLLERNIE--------SKENITGRIIDLIAPIGKGQ 131 (592)
Q Consensus 62 -~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~-p~~R~~ie~~ap--------~~l~TGiraID~l~PigkGQ 131 (592)
+|+-.. ...+|-|--.-..++.--...|++...-+ -.+-+|+..+.| .|+.||.|++|+|+||..|+
T Consensus 170 lpPr~~G---tvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRPv~ekl~an~PLltGQRvLDalfPcVqGG 246 (618)
T KOG1352|consen 170 LPPRARG---TVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRPVTEKLPANHPLLTGQRVLDALFPCVQGG 246 (618)
T ss_pred cCCccCc---eEEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcchhhccCCCCcccccchHHHhhcchhcCC
Confidence 111100 01111111111111100112244321111 112233333333 29999999999999999999
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----------------cEEEEEeCCCCCH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----------------RGEVIASTFDEPA 195 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----------------~~~vV~~t~d~~~ 195 (592)
+..|.|..|||||++.|.+.+.. |+|+ +||++||||+.|+.|+++++ ||++|+||+++|.
T Consensus 247 TtaIPGAFGCGKTVISQsLSKYS---NSD~-iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPV 322 (618)
T KOG1352|consen 247 TTAIPGAFGCGKTVISQSLSKYS---NSDA-IIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPV 322 (618)
T ss_pred ccccCcccccchHHHHHHHhhcc---CCCe-EEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCch
Confidence 99999999999999999988754 3565 67999999999999999988 5899999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc------C
Q psy3765 196 YRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE------E 268 (592)
Q Consensus 196 ~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~------~ 268 (592)
+.|.++.|+++|+||||||||+||-.+.||.+|||+|+||||..++|+|. .|||+|+-.++++||||||++. +
T Consensus 323 AAREASIYTGITlsEYfRDmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~R 402 (618)
T KOG1352|consen 323 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDR 402 (618)
T ss_pred hhhhhhhhhcccHHHHHHhcCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCc
Confidence 99999999999999999999999999999999999999999999999997 7999999999999999999983 6
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCC------CHHHHHHHHHH
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLI------QDDKLQKIWVL 342 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~------~~~~~~~~~~l 342 (592)
.||+|++++ +.|||+|++||++..+.+|+..+|.||++||+|.|||.|||+.|+|+++..+- .++......++
T Consensus 403 eGsVsIVgA-VSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk~ 481 (618)
T KOG1352|consen 403 EGSVSIVGA-VSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTKA 481 (618)
T ss_pred CceeEEEEe-ecCCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 999999996 67999999999999999999999999999999999999999999999986653 37778889999
Q ss_pred HHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhcccccccccchhhhhHHHHHHHHHh
Q psy3765 343 RKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKK 409 (592)
Q Consensus 343 r~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~ 409 (592)
+++|+..+++.++++|+|...+.++||..|+ ++.++++|+|||.|. .+|.+|++-|+-.|++-+..
T Consensus 482 keilq~eedl~eivQLVGK~aL~etdKitLevaklik~DfLqQN~ys-~YD~~CPfyKt~~Mlrn~i~ 548 (618)
T KOG1352|consen 482 KEILQEEEDLSEIVQLVGKSALAETDKITLEVAKLIKDDFLQQNGYS-PYDRFCPFYKTVGMLRNIIA 548 (618)
T ss_pred HHHHhhhhhHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhcCCC-chhhcCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999998 99999999999998776543
No 60
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=6.6e-59 Score=492.70 Aligned_cols=221 Identities=64% Similarity=1.027 Sum_probs=213.2
Q ss_pred HHHhhccchhHHHhhcccccccccchhhhhHHHHHHHHHhhccccceeeeceeeeeecCCeeEeeCCCCCCCCCCCCccc
Q psy3765 370 NLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYL 449 (592)
Q Consensus 370 ~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~~~~~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v 449 (592)
..|+++...++...+++ ++++++++|+|++|+++|++.+.++++.++++||||+++|||||||++++||+|+++||||
T Consensus 4 ~~~~~~~~~~l~~~a~~--~~~~~~~~~~k~~l~~~i~~~~~~~~~~~~~~g~le~~~~g~gflr~~~~~y~~~~~d~yv 81 (416)
T PRK09376 4 SELKNKSLSELLELAEE--LGIENASRLRKQELIFAILKAQAEKGGDIFGEGVLEILPDGFGFLRSPDANYLPGPDDIYV 81 (416)
T ss_pred HHhhcCCHHHHHHHHHH--hCcCccccCChhhhhHHHHHHHHhcCCceEEEEEEEEcCCCCeEEeCCCcCCCCCCCCeee
Confidence 45677788888888888 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCeeeeeecCCCCCCcccceeeeeEEe-----------------------------------------
Q psy3765 450 SPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN----------------------------------------- 488 (592)
Q Consensus 450 ~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~v~~in----------------------------------------- 488 (592)
|++|||+|+||+||.|.|.+|+|+++++|++|++|++||
T Consensus 82 s~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvID 161 (416)
T PRK09376 82 SPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETGNPEDLSTRIID 161 (416)
T ss_pred CHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCCcccCCCCChhhcccccCCCCcccceeeee
Confidence 999999999999999999999999999999999999998
Q ss_pred -------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCcEEEecCCCCcc------
Q psy3765 489 -------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL------ 549 (592)
Q Consensus 489 -------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~vv~st~D~~~~------ 549 (592)
|||||+|||||+++|++++..||+++++||+|||||||||+||+++++|+||+||||+||.
T Consensus 162 ~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a 241 (416)
T PRK09376 162 LIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVA 241 (416)
T ss_pred eecccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999993
Q ss_pred ---------------------chHHHHHHHhhccCCCCCCcccCCcCccccCCcccccccccCC
Q psy3765 550 ---------------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 550 ---------------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg~ar~~ 592 (592)
|||||||||||+++++|||++|||+||+||+.||||||+|||+
T Consensus 242 ~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~ 305 (416)
T PRK09376 242 EMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNI 305 (416)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999995
No 61
>KOG1351|consensus
Probab=100.00 E-value=2.2e-58 Score=465.84 Aligned_cols=320 Identities=16% Similarity=0.157 Sum_probs=301.4
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
.+-+.+ ++..+..+++..++|||+|++| +|||.+|+...+...++.|. |+||.+|+++|+ +++|
T Consensus 86 ~t~~ef-tg~~lr~pvsedmlgrifngsg----------kpid~gp~vl~edyldi~gq-pinp~~riypee----miqt 149 (489)
T KOG1351|consen 86 KTTVEF-TGEILRTPVSEDMLGRIFNGSG----------KPIDKGPPVLAEDYLDINGQ-PINPYARIYPEE----MIQT 149 (489)
T ss_pred cceEEE-ecccccccccHHHhhhhhcCCC----------CccCCCCCcChHHhhccCCC-cCCcccccChHH----HHHh
Confidence 345666 7899999999999999999999 58999999999999999995 999999999999 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhc-----------CCCeEEEEEEeccchhHHHHHHhhc---
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTN-----------HSEAIMIVMLIDERPEEVTEMQRSV--- 182 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~-----------~~~~~~I~~lIGeR~~Ev~e~~~~~--- 182 (592)
||.+||.|++|+|||++.||+.+|..++.+++||+++..-- ..++.+||+++|...+..+.|.+.+
T Consensus 150 gis~idvmnsiargqkipifsaaglphneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeen 229 (489)
T KOG1351|consen 150 GISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEEN 229 (489)
T ss_pred CchHHhhhhHHhccCccceeecCCCChhHHHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhc
Confidence 99999999999999999999999999999999999974311 1367788999999999999999998
Q ss_pred ----cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHH-HcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccc
Q psy3765 183 ----RGEVIASTFDEPAYRHVQVAEMVLEKAKRLV-EMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRP 256 (592)
Q Consensus 183 ----~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r-~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~ 256 (592)
+++++.+-+++|..+|+..|+.|+|.||||+ +.+||||+++.||+.||+|+||+|.+..|.|. +|||+|+|+++
T Consensus 230 gsm~~v~lflnlandptieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdl 309 (489)
T KOG1351|consen 230 GSMERVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDL 309 (489)
T ss_pred CCccceEEEEecCCCCchhhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhH
Confidence 6899999999999999999999999999999 57999999999999999999999999999995 79999999999
Q ss_pred hHHHhhcccccC-CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCC---
Q psy3765 257 KRFFGAARNIEE-GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQ--- 332 (592)
Q Consensus 257 ~~~~erA~~~~~-~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~--- 332 (592)
+.+|||||++|+ +||||.|+ +|++|.||++|||||.+.+|++|||+.||+|+++.+||+||++.|+||+|+..++
T Consensus 310 atiyeragrvegr~gsitqip-iltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegm 388 (489)
T KOG1351|consen 310 ATIYERAGRVEGRNGSITQIP-ILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 388 (489)
T ss_pred HHHHHHhcccccCCCceeeee-eEecCCcccCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCc
Confidence 999999999985 99999999 6999999999999999999999999999999999999999999999999988776
Q ss_pred --HHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh
Q psy3765 333 --DDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK 373 (592)
Q Consensus 333 --~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~ 373 (592)
++|-++.+++.++++..+++++|..++|++.++++|...|+
T Consensus 389 tr~dh~dvsnqlya~yaigkdvqamkavvgeeals~ed~l~le 431 (489)
T KOG1351|consen 389 TRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSEDLLYLE 431 (489)
T ss_pred ccccchhhHHHHHHHHHhcchHHHHHHHhcccccChhhhHHHH
Confidence 89999999999999999999999999999999999977777
No 62
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=2.7e-56 Score=451.96 Aligned_cols=245 Identities=71% Similarity=1.098 Sum_probs=237.9
Q ss_pred cccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCH
Q psy3765 116 ITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 195 (592)
Q Consensus 116 TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~ 195 (592)
..+|+||+|+|||+|||++|+|++|+|||||+++|++.+.+++.++.++++++|+|+.|+.+|++.+.+++|++++|+|+
T Consensus 2 ~~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~ 81 (249)
T cd01128 2 LSTRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPP 81 (249)
T ss_pred cchhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCH
Confidence 46899999999999999999999999999999999999888777888888899999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCCCCCCCcccccchHHHhhcccccCCcceeeE
Q psy3765 196 YRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTII 275 (592)
Q Consensus 196 ~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i 275 (592)
..|+++++.++++||||+++|++|++++|++||||+||||+++..|++|++|||+++|+.+++++++||++.++||||++
T Consensus 82 ~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l 161 (249)
T cd01128 82 ERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998789999999
Q ss_pred EEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccccHHHH
Q psy3765 276 ATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFT 355 (592)
Q Consensus 276 ~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~l 355 (592)
+|+++|++++++||+.+++++++||||+|||+|+..|+||||||+.|+||.++++++++|+..++++|++|+.|+++++|
T Consensus 162 ~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~~~~~~~~~~~~r~~~~~~~~~~~~ 241 (249)
T cd01128 162 ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDPEELQRMWLLRRVLSDMDPIEAM 241 (249)
T ss_pred eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhCCHHHHHHHHHHHHHHHccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccc
Q psy3765 356 VSLFF 360 (592)
Q Consensus 356 i~l~g 360 (592)
..+..
T Consensus 242 ~~~~~ 246 (249)
T cd01128 242 EFLLK 246 (249)
T ss_pred HHHHH
Confidence 98765
No 63
>KOG1350|consensus
Probab=100.00 E-value=2.9e-57 Score=461.44 Aligned_cols=323 Identities=16% Similarity=0.192 Sum_probs=288.2
Q ss_pred ccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccccceeec
Q psy3765 44 QIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDL 123 (592)
Q Consensus 44 ~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~ 123 (592)
.+-+..+++|...+||+.|-.| +|||...|.....+.++..- ++.-.+ ...+. +.++||||++|+
T Consensus 120 tG~Pi~ipVG~~tLGRI~NViG----------ePiDerGpi~s~~~~~IHae-aP~f~e-~s~~~---eIl~TGIKVvDL 184 (521)
T KOG1350|consen 120 TGYPISIPVGPETLGRIMNVIG----------EPIDERGPIKSKKYSPIHAE-APEFVE-MSVEQ---EILVTGIKVVDL 184 (521)
T ss_pred CCCceeeecCHHHHhhHHHhcC----------CcccccCCcccccccccccC-ChhHhh-hcccH---HHHhhcceeeee
Confidence 5678889999999999999988 67887777776666555442 222221 11221 379999999999
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------------cEEEEEeC
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------------RGEVIAST 190 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------------~~~vV~~t 190 (592)
|+|..||+++++||++|+|||+|++++++++++.|.++ .||+++|||.||.+|+++++ |..+|+.+
T Consensus 185 LAPYakGGKIGLFGGAGVGKTVlImELINNiAKaHGGy-SVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQ 263 (521)
T KOG1350|consen 185 LAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGY-SVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQ 263 (521)
T ss_pred ecccccCCeeeeeccCCccceeeHHHHHHHHHHhcCCe-EEeeccccccccccHHHHHHHhcCeeeccCCcceEEEEeec
Confidence 99999999999999999999999999999999999996 78999999999999999988 46899999
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccccC
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
+++||+.|.+++.+++|+|||||| .|+|||+++|+++||.+|..|+|..+||+|| -||+|.+.++...+.||.... +
T Consensus 264 MNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITtT-k 342 (521)
T KOG1350|consen 264 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-K 342 (521)
T ss_pred cCCCCCceeeeeeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhcc-c
Confidence 999999999999999999999997 6999999999999999999999999999998 599999999999999997764 7
Q ss_pred CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCcccc-CCCCCHHHHHHHHHHHHHHh
Q psy3765 269 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE-ELLIQDDKLQKIWVLRKLLY 347 (592)
Q Consensus 269 ~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~-~~~~~~~~~~~~~~lr~~l~ 347 (592)
.||||.++++++|+ ||++||.|..+.+++|..-+|||.+++.|||||+||+.|.||+| +.+++++|++.++.+++.|+
T Consensus 343 kGSiTSvQAvYVPA-DDLtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG~eHY~vA~~Vqk~LQ 421 (521)
T KOG1350|consen 343 KGSITSVQAVYVPA-DDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGEEHYNVARGVQKTLQ 421 (521)
T ss_pred cCceeEEEEEEeeh-hccCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccCccccchHHHHHHHHHHHHHH
Confidence 99999999999986 89999999999999999999999999999999999999999997 78999999999999999999
Q ss_pred ccccHHHHHhccccccCChhhhHHHhhccchhHHHhh
Q psy3765 348 SLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAET 384 (592)
Q Consensus 348 ~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q 384 (592)
+|++++++|.++|.+++++.||......-..+-|+-|
T Consensus 422 ~YKsLQDIIAILGmDELSEeDkLTV~RARKiqRFLSQ 458 (521)
T KOG1350|consen 422 DYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQ 458 (521)
T ss_pred HHHHHHHHHHHhCchhhchhhhhhHHHHHHHHHHHcC
Confidence 9999999999999999999998888733333444333
No 64
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=1.2e-55 Score=469.54 Aligned_cols=222 Identities=62% Similarity=0.979 Sum_probs=210.5
Q ss_pred hHHHhhccchhHHHhhcccccccccchhhhhHHHHHHHHHhhccccceeeeceeeeeecCCeeEeeCCCCCCCCCCCCcc
Q psy3765 369 KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448 (592)
Q Consensus 369 k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~~~~~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~ 448 (592)
-..|+++.+.++...+++ ++++++++++||+|+++|++++.++++.++++|||||++|||||||++++||+|+++|||
T Consensus 3 ~~~l~~~~~~~l~~~a~~--~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~g~le~~~~g~gflr~~~~~~~~~~~d~y 80 (415)
T TIGR00767 3 IEELKNMPLEELRKLAEQ--LGVENTSSLKKQELIFAILKAHAEQGGLIFGEGVLEILPDGFGFLRSPDSSYLPGPDDIY 80 (415)
T ss_pred hHHhhcCCHHHHHHHHHH--cCCCCcccCCHHHHHHHHHHhhhhcCCceEEEEEEEEcCCCCeEEeCCCcCCCCCCCCee
Confidence 356788889999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCeeeeeecCCCCCCcccceeeeeE----------------------------------------Ee
Q psy3765 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKK----------------------------------------VN 488 (592)
Q Consensus 449 v~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~v~~----------------------------------------in 488 (592)
||++|||+|+||+||.|.|.+|+|+.+++|++|++|.. ||
T Consensus 81 vs~~~i~~~~lr~gd~v~g~~R~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id 160 (415)
T TIGR00767 81 VSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLD 160 (415)
T ss_pred eCHHHHHhcCCCCCCEEEEEEeccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCccceeecCccccceeeee
Confidence 99999999999999999999999999999888777433 33
Q ss_pred -------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCcEEEecCCCCcc------
Q psy3765 489 -------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL------ 549 (592)
Q Consensus 489 -------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~vv~st~D~~~~------ 549 (592)
|+|||+|||||+++|++.+..||++++++|+||||||+||+||+++++++||+||||+||.
T Consensus 161 ~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va 240 (415)
T TIGR00767 161 LFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVA 240 (415)
T ss_pred eEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999983
Q ss_pred ---------------------chHHHHHHHhhccCCCCCCcccCCcCccccCCcccccccccCC
Q psy3765 550 ---------------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 550 ---------------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg~ar~~ 592 (592)
||+||||||||.+++++||++|||+||+|++.||||||+|||+
T Consensus 241 ~~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s~G~~~~~~~~~~~~~~~a~~~ 304 (415)
T TIGR00767 241 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNI 304 (415)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCCCCcChhhhcccHHHHhhcCCC
Confidence 9999999999999999999999999999999999999999995
No 65
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=2.2e-54 Score=471.89 Aligned_cols=178 Identities=51% Similarity=0.846 Sum_probs=172.2
Q ss_pred cccceeeeceeeeeecCCeeEeeCCCCCCCCCCCCcccCccccccCCCCCCCeeeeeecCCCCCC------cccceeeee
Q psy3765 412 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGE------RYFALLKIK 485 (592)
Q Consensus 412 ~~~~~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~~l~~gd~~~G~v~~~~~~~------~~~~l~~v~ 485 (592)
+.+..++++|||||+ |||||||+. ||+|+++|||||++|||+|+||.||.|.|.||+|++++ +|++|++|.
T Consensus 289 e~~~~~~~~GiLdi~-dg~gFlR~~--~y~~~~~Dvyvs~~qirr~~Lr~Gd~v~G~vr~p~~~e~~~~r~k~~~l~~v~ 365 (672)
T PRK12678 289 EDDVLVPVAGILDVL-DNYAFVRTS--GYLPGPNDVYVSMNQVRKNGLRKGDAVTGAVRAPREGEQGNQRQKFNPLVRLD 365 (672)
T ss_pred ccCCeeEeeEEEEec-CCeeEeeCC--CCCCCCCCeeeCHHHHHHcCCCCCCEEEEeecCCCCCccccccceeeeeeeEe
Confidence 456788999999999 899999985 99999999999999999999999999999999999998 999999999
Q ss_pred EEe-----------------------------------------------------cCCCCCcHHHHHHHHHHHHhcCCC
Q psy3765 486 KVN-----------------------------------------------------VASPKSGKSIILQHIAHAITTNHS 512 (592)
Q Consensus 486 ~in-----------------------------------------------------~a~p~~GKttll~~ia~~~~~~~~ 512 (592)
+|| |+|||+||||||++||++|++|||
T Consensus 366 ~vNg~~~e~~~~r~~F~~Ltp~~P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~ 445 (672)
T PRK12678 366 SVNGMSPEEAKKRPEFGKLTPLYPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNP 445 (672)
T ss_pred eeCCCChHHhccCCCcccCCCCChHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCC
Confidence 998 999999999999999999999999
Q ss_pred ceeEEEEEEeCCchhhHHHHHhcCCcEEEecCCCCcc---------------------------chHHHHHHHhhccCCC
Q psy3765 513 EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL---------------------------SVMCKLARAYNTVIPA 565 (592)
Q Consensus 513 ~~~~~v~Li~ER~eEV~d~~~~~~~~vv~st~D~~~~---------------------------DSiTR~arA~n~~~~~ 565 (592)
++++||+||||||||||||.++++||||+||||+||. |||||||||||++.++
T Consensus 446 ~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ArAyrev~~~ 525 (672)
T PRK12678 446 ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAAPA 525 (672)
T ss_pred CeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999983 9999999999999999
Q ss_pred CCCcccCCcCccccCCcccccccccCC
Q psy3765 566 SGKVLTGGVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 566 ~g~~lsgg~d~~al~~pk~~fg~ar~~ 592 (592)
|||+||||+|++++|+||+||++|||+
T Consensus 526 sGr~lSGG~d~~a~ypP~~F~~~AR~i 552 (672)
T PRK12678 526 SGRILSGGVDSTALYPPKRFFGAARNI 552 (672)
T ss_pred CCCccCCCCchhhccCccHHHHHHHhh
Confidence 999999999999999999999999986
No 66
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=6.5e-47 Score=400.33 Aligned_cols=177 Identities=54% Similarity=0.869 Sum_probs=160.1
Q ss_pred ccceeeeceeeeeecCCeeEeeCCCCCCCCCCCCcccCccccccCCCCCCCeeeeeecCCCCCCcccceee---------
Q psy3765 413 IGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLK--------- 483 (592)
Q Consensus 413 ~~~~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~--------- 483 (592)
++....++||||+++|||||||++++||+|+++|||||++|||+|+|+.||.|.|..++ +++++.|.+
T Consensus 13 ~~~~~~~~g~l~~~~~g~gflr~~~~~~~~~~~d~yv~~~~i~~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~ 89 (380)
T PRK12608 13 KQSTEEVLGVLEILGDGFGFLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDP 89 (380)
T ss_pred hcCCCcceEEEEEcCCCceEeecCccCCCCCCCCeeeCHHHHHHhCCCCCCEEEeccCC---CCChhheEEEeccCCcCc
Confidence 34456789999999999999999999999999999999999999999999999997654 222222332
Q ss_pred -------------------------------eeEEe-------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEE
Q psy3765 484 -------------------------------IKKVN-------------VASPKSGKSIILQHIAHAITTNHSEAIMIVM 519 (592)
Q Consensus 484 -------------------------------v~~in-------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~ 519 (592)
+|+|| ++||||||||||++||+++.+|||+++++++
T Consensus 90 d~~~~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~ 169 (380)
T PRK12608 90 EKLARRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVL 169 (380)
T ss_pred hhcccccCcCcCCCCCccccccccccCcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 23333 9999999999999999999999999999999
Q ss_pred EEeCCchhhHHHHHhcCCcEEEecCCCCcc---------------------------chHHHHHHHhhccCCCCCCcccC
Q psy3765 520 LIDERPEEVTEMQRSVRGEVIASTFDEPAL---------------------------SVMCKLARAYNTVIPASGKVLTG 572 (592)
Q Consensus 520 Li~ER~eEV~d~~~~~~~~vv~st~D~~~~---------------------------DSiTR~arA~n~~~~~~g~~lsg 572 (592)
|||||++||+||+++++++|++||||+++. ||+||+|||||++++++||++||
T Consensus 170 lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~ 249 (380)
T PRK12608 170 LIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSG 249 (380)
T ss_pred EecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCC
Confidence 999999999999999999999999999983 99999999999999999999999
Q ss_pred CcCccccCCcccccccccCC
Q psy3765 573 GVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 573 g~d~~al~~pk~~fg~ar~~ 592 (592)
|+||++|+.|||||++|||+
T Consensus 250 G~~~s~~~~~~rl~~~A~~~ 269 (380)
T PRK12608 250 GVDARALQRPKRLFGAARNI 269 (380)
T ss_pred CcChHHHhhhHHHHHhcCCC
Confidence 99999999999999999995
No 67
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.92 E-value=7.5e-26 Score=240.07 Aligned_cols=117 Identities=31% Similarity=0.402 Sum_probs=97.7
Q ss_pred ccCCCCCCCeeeeee----cCCCCC------Cc--------ccceee----------eeEEe-------------cCCCC
Q psy3765 455 RRFNLHTGILWKGEI----RVPKNG------ER--------YFALLK----------IKKVN-------------VASPK 493 (592)
Q Consensus 455 ~~~~l~~gd~~~G~v----~~~~~~------~~--------~~~l~~----------v~~in-------------~a~p~ 493 (592)
+.+.+++||.|+|+| ..|.++ .. ..||.| ||+|| ||+||
T Consensus 94 ~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsG 173 (441)
T COG1157 94 RPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSG 173 (441)
T ss_pred CccccccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCC
Confidence 558999999999999 122222 22 233333 99999 99999
Q ss_pred CcHHHHHHHHHHHHhcCCCceeEEEE-EEeCCchhhHHHHHhcCCc-------EEEecCCCCcc----------------
Q psy3765 494 SGKSIILQHIAHAITTNHSEAIMIVM-LIDERPEEVTEMQRSVRGE-------VIASTFDEPAL---------------- 549 (592)
Q Consensus 494 ~GKttll~~ia~~~~~~~~~~~~~v~-Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~---------------- 549 (592)
+||||||+|||+ ++++|++|+ |||||||||+||+|+.+|+ ||+||+|+||+
T Consensus 174 VGKStLLgMiar-----~t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyF 248 (441)
T COG1157 174 VGKSTLLGMIAR-----NTEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYF 248 (441)
T ss_pred CcHHHHHHHHhc-----cccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999777 9999999999999999997 99999999995
Q ss_pred -----------chHHHHHHHhhccCCCCCCcccC-CcCc
Q psy3765 550 -----------SVMCKLARAYNTVIPASGKVLTG-GVDS 576 (592)
Q Consensus 550 -----------DSiTR~arA~n~~~~~~g~~lsg-g~d~ 576 (592)
||+||||||.+.+..+.|-.-+. |-=|
T Consensus 249 RDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYpp 287 (441)
T COG1157 249 RDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPP 287 (441)
T ss_pred HhCCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCc
Confidence 99999999999999998876543 4333
No 68
>KOG1353|consensus
Probab=99.92 E-value=1.5e-25 Score=223.76 Aligned_cols=260 Identities=16% Similarity=0.171 Sum_probs=202.7
Q ss_pred CCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCC
Q psy3765 18 PDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTP 97 (592)
Q Consensus 18 ~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~p 97 (592)
++..|..+..+.. +-...|++.-- +..-.+++|+.|+|+|.+..| +||||..|...+.+.
T Consensus 61 ~~~vg~v~~g~d~-~ikeg~~VkrT--gaIvDVpvg~~LlgrvvdAlG----------n~idgkG~i~~~~~~------- 120 (340)
T KOG1353|consen 61 GENVGVVVFGEDS-LIKEGDTVKRT--AAISDVPPLKALLGRVGCALG----------EPIDGNGKISAKERR------- 120 (340)
T ss_pred CCceEEEEEcCcc-eeccCceEEee--eeeeccCchHHHhhhhhhhhc----------CeecCCCCccccccc-------
Confidence 4566666665322 23344555443 467789999999999999999 467777666554433
Q ss_pred CCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcC--------CCeEEEEEEec
Q psy3765 98 LHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNH--------SEAIMIVMLID 169 (592)
Q Consensus 98 i~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~--------~~~~~I~~lIG 169 (592)
-..|..+.+ |++||+|++|.+.|||||||.+|+|++.+|||.|+ +..++|+++ ..++|||++||
T Consensus 121 --ii~r~Sv~e----pmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla--~dTI~nqk~~N~~~~ekkKiyCvyvaig 192 (340)
T KOG1353|consen 121 --IIPRASVDE----PMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLA--IDTILNQKRGNECLDEKKKIYCVYVAIG 192 (340)
T ss_pred --cccceeeec----hhhhhhhHhhceeeeccCceEEEeccccCCceeee--ehhhhhhhhhcccccccceEEEEEEecc
Confidence 122455555 89999999999999999999999999999999999 777777752 24899999999
Q ss_pred cchhHHHHHHhhcc-------EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCC
Q psy3765 170 ERPEEVTEMQRSVR-------GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242 (592)
Q Consensus 170 eR~~Ev~e~~~~~~-------~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge 242 (592)
++.+.|..+++.+. +++|++|++
T Consensus 193 qkrStvaqlv~~l~~~~a~~y~ivv~atas-------------------------------------------------- 222 (340)
T KOG1353|consen 193 QKRSTVAQLVQRLEEADAMEYSIVVAATAS-------------------------------------------------- 222 (340)
T ss_pred cchhHHHHHHHHHHhcCCceEEEEEEeecc--------------------------------------------------
Confidence 99999999998871 455665555
Q ss_pred CCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCC
Q psy3765 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322 (592)
Q Consensus 243 ~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S 322 (592)
. .+|.+..||.++.+| ||||+|..+|+.+|+.||||+..|
T Consensus 223 --------------------------------------q-~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~s 262 (340)
T KOG1353|consen 223 --------------------------------------Q-AGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLS 262 (340)
T ss_pred --------------------------------------c-ccceeeecccceeee-cchhHHHHHHHHhccchhheeeeE
Confidence 1 347777888899999 999999999999999999999999
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHH
Q psy3765 323 GTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQEL 402 (592)
Q Consensus 323 ~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeL 402 (592)
+||+.+...-+...+++..++-.|++|+|+.+..+.+. .+....+..|..-....+.+.|.. |.+|--++.
T Consensus 263 vsrvgsaaq~kamkqvag~~klelaq~revaafaqfgs--dlda~tq~~l~rg~rltellkq~q-------y~p~~~e~q 333 (340)
T KOG1353|consen 263 VSRVGSAAQTKAMKQVAGSLKLELAQYREVAAFAQFGS--DLDAATQQLLNRGVRLTELLKQGQ-------YAPLAIEEQ 333 (340)
T ss_pred eeeccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc--cccHHHHHHHHhhhHHHHHHhcCC-------CCCcchhhh
Confidence 99999999999999999999999999999999999766 444444555555444447777766 666665555
Q ss_pred HH
Q psy3765 403 MF 404 (592)
Q Consensus 403 i~ 404 (592)
+.
T Consensus 334 v~ 335 (340)
T KOG1353|consen 334 VA 335 (340)
T ss_pred ee
Confidence 43
No 69
>PF07497 Rho_RNA_bind: Rho termination factor, RNA-binding domain; InterPro: IPR011113 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [].; GO: 0003723 RNA binding, 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=99.91 E-value=3.7e-25 Score=186.76 Aligned_cols=76 Identities=58% Similarity=1.084 Sum_probs=63.9
Q ss_pred eeeceeeeeecCCeeEeeCCCCCCCCCCCCcccCccccccCCCCCCCeeeeeecCCCCCCcccceeeeeEEecCCC
Q psy3765 417 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASP 492 (592)
Q Consensus 417 ~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~v~~in~a~p 492 (592)
++++|+|||++|||||||++++||+|+++|||||++|||+|+||+||.|.|.+|+|+++|+|++|++|.+||-.+|
T Consensus 1 i~~~GvLei~~dGyGFLR~~~~~y~~~~~DvYVs~~qIrrf~LR~GD~V~G~vr~p~~~ek~~aL~~V~~VNg~~p 76 (78)
T PF07497_consen 1 IYVEGVLEILPDGYGFLRSPDNNYLPSPDDVYVSPSQIRRFGLRTGDLVEGQVRPPREGEKYFALLRVESVNGRPP 76 (78)
T ss_dssp EEEEEEEEE-TTS-EEEE-GGGTTS-STTSEEE-CCCCCCTT--TTEEEEEEEE--STTSSSEEECEECEETTECT
T ss_pred CEEEEEEEECCCCcEEeECCCcCCCCCCCCEEECHHHHHHcCCCCCCEEEEEEeCCCCCCcceeeEEEEeECCcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999996555
No 70
>PF07497 Rho_RNA_bind: Rho termination factor, RNA-binding domain; InterPro: IPR011113 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [].; GO: 0003723 RNA binding, 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=99.89 E-value=1.3e-23 Score=177.33 Aligned_cols=78 Identities=62% Similarity=1.169 Sum_probs=66.6
Q ss_pred EEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccc
Q psy3765 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPEL 85 (592)
Q Consensus 8 ~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~ 85 (592)
|+++|+|||++|||||||+.++||+|+++|||||++|||+|+||.||.+.|.|+.|+.+|+|++|++|+.|||.+|++
T Consensus 1 i~~~GvLei~~dGyGFLR~~~~~y~~~~~DvYVs~~qIrrf~LR~GD~V~G~vr~p~~~ek~~aL~~V~~VNg~~pe~ 78 (78)
T PF07497_consen 1 IYVEGVLEILPDGYGFLRSPDNNYLPSPDDVYVSPSQIRRFGLRTGDLVEGQVRPPREGEKYFALLRVESVNGRPPEK 78 (78)
T ss_dssp EEEEEEEEE-TTS-EEEE-GGGTTS-STTSEEE-CCCCCCTT--TTEEEEEEEE--STTSSSEEECEECEETTECTTG
T ss_pred CEEEEEEEECCCCcEEeECCCcCCCCCCCCEEECHHHHHHcCCCCCCEEEEEEeCCCCCCcceeeEEEEeECCcCCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998873
No 71
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=99.87 E-value=1.6e-22 Score=166.89 Aligned_cols=68 Identities=69% Similarity=1.168 Sum_probs=65.6
Q ss_pred eceeeeeecCCeeEeeCCCCCCCCCCCCcccCccccccCCCCCCCeeeeeecCCCCCCcccceeeeeE
Q psy3765 419 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKK 486 (592)
Q Consensus 419 ~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~v~~ 486 (592)
++|+|||++|||||||+..+||+|+++|||||++|||+|+||+||.|.|.+|+|+++++|++|.+|++
T Consensus 1 ~~GiLdi~~~g~GFLR~~~~~y~~~~~DvyVs~~~Irr~~LR~GD~V~G~vr~p~~~ek~~~L~~V~~ 68 (68)
T cd04459 1 GSGVLEILPDGFGFLRSSGYNYLPGPDDIYVSPSQIRRFNLRTGDTVVGQIRPPKEGERYFALLKVEA 68 (68)
T ss_pred CcEEEEEcCCCceEEecCCcCCCCCCCCEEECHHHHHHhCCCCCCEEEEEEeCCCCCCCcceeEEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999864
No 72
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=99.80 E-value=5.1e-20 Score=189.24 Aligned_cols=83 Identities=14% Similarity=0.308 Sum_probs=76.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
|+++|+|||||+++|++++.++|+++ .|++|||||+|||+||++..+++ ||+||+|+||.
T Consensus 75 f~~~G~GKTtLa~~i~~~i~~~~~~~-~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~ 153 (274)
T cd01133 75 FGGAGVGKTVLIMELINNIAKAHGGY-SVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTM 153 (274)
T ss_pred ecCCCCChhHHHHHHHHHHHhcCCCE-EEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988654 66779999999999999998753 99999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCcccC
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLTG 572 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~lsg 572 (592)
||+||||+|||++....|+..+.
T Consensus 154 AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~ 192 (274)
T cd01133 154 AEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSA 192 (274)
T ss_pred HHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999988
No 73
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=99.80 E-value=6.4e-20 Score=151.45 Aligned_cols=67 Identities=73% Similarity=1.253 Sum_probs=65.1
Q ss_pred eeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeee
Q psy3765 10 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIK 76 (592)
Q Consensus 10 ~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~ 76 (592)
++||||+++|||||||+..+||+|+++|||||++|||+|+||.||.|.|.++.|+++|+|++|++|+
T Consensus 1 ~~GiLdi~~~g~GFLR~~~~~y~~~~~DvyVs~~~Irr~~LR~GD~V~G~vr~p~~~ek~~~L~~V~ 67 (68)
T cd04459 1 GSGVLEILPDGFGFLRSSGYNYLPGPDDIYVSPSQIRRFNLRTGDTVVGQIRPPKEGERYFALLKVE 67 (68)
T ss_pred CcEEEEEcCCCceEEecCCcCCCCCCCCEEECHHHHHHhCCCCCCEEEEEEeCCCCCCCcceeEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999986
No 74
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.79 E-value=1.1e-19 Score=184.99 Aligned_cols=108 Identities=68% Similarity=1.048 Sum_probs=102.1
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCcEEEecCCCCcc---------------
Q psy3765 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL--------------- 549 (592)
Q Consensus 485 ~~in~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~vv~st~D~~~~--------------- 549 (592)
+.+.|+|+|+|||||+++|++.+..+|.++.++|++|+||++||.||++.+...||++++|+|+.
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 45569999999999999999999888888888999999999999999999999999999999883
Q ss_pred ------------chHHHHHHHhhccCCCCCCcccCCcCccccCCcccccccccCC
Q psy3765 550 ------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 550 ------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg~ar~~ 592 (592)
|++||||+|||.+....|+++|||-+|++++.|++++..|||+
T Consensus 98 ~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~ 152 (249)
T cd01128 98 LVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNI 152 (249)
T ss_pred HHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999985
No 75
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=99.79 E-value=8.5e-20 Score=199.39 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=95.6
Q ss_pred ccCCCCCCCeeeeeec----CCCC------CCccccee--------e----------eeEEe-------------cCCCC
Q psy3765 455 RRFNLHTGILWKGEIR----VPKN------GERYFALL--------K----------IKKVN-------------VASPK 493 (592)
Q Consensus 455 ~~~~l~~gd~~~G~v~----~~~~------~~~~~~l~--------~----------v~~in-------------~a~p~ 493 (592)
+.+.+++|+.++|+|- .|.+ ...++|+. + |++|| ||++|
T Consensus 74 ~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G 153 (461)
T PRK12597 74 GPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAG 153 (461)
T ss_pred CceEEEcChhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCC
Confidence 4577888888888881 1221 11222222 2 78888 99999
Q ss_pred CcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------------
Q psy3765 494 SGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------------- 549 (592)
Q Consensus 494 ~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------------- 549 (592)
+||||||+||++++.++|+++.| ++|||||+|||+||++..+++ ||+||+|+||.
T Consensus 154 ~GKt~Ll~~~~~~~~~~~~dv~V-~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfr 232 (461)
T PRK12597 154 VGKTVLMMELIFNISKQHSGSSV-FAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLR 232 (461)
T ss_pred CChhHHHHHHHHHHHhhCCCEEE-EEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998777544 459999999999999999874 99999999983
Q ss_pred -----------chHHHHHHHhhccCCCCCCcccC-Cc
Q psy3765 550 -----------SVMCKLARAYNTVIPASGKVLTG-GV 574 (592)
Q Consensus 550 -----------DSiTR~arA~n~~~~~~g~~lsg-g~ 574 (592)
||+||||+|||++..+.|+.-+. |.
T Consensus 233 d~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GY 269 (461)
T PRK12597 233 DEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGY 269 (461)
T ss_pred HhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCc
Confidence 99999999999999999998773 43
No 76
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=99.78 E-value=2.2e-19 Score=195.86 Aligned_cols=87 Identities=17% Similarity=0.352 Sum_probs=78.6
Q ss_pred eeEEe-------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEec
Q psy3765 484 IKKVN-------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIAST 543 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st 543 (592)
|++|| ||++|+||||||+||+++++++++++ +|++|||||+|||+||++..+++ ||++|
T Consensus 132 iraID~l~pigkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v-~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~at 210 (463)
T PRK09280 132 IKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGY-SVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQ 210 (463)
T ss_pred CeeecccCCcccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCE-EEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEEC
Confidence 78888 99999999999999999999998754 45569999999999999999764 99999
Q ss_pred CCCCcc----------------------------chHHHHHHHhhccCCCCCCccc
Q psy3765 544 FDEPAL----------------------------SVMCKLARAYNTVIPASGKVLT 571 (592)
Q Consensus 544 ~D~~~~----------------------------DSiTR~arA~n~~~~~~g~~ls 571 (592)
+|+||. ||+||||+|||++..+.|+.-+
T Consensus 211 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~ 266 (463)
T PRK09280 211 MNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPS 266 (463)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCCCCc
Confidence 999983 9999999999999999998755
No 77
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=99.76 E-value=5e-19 Score=192.63 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=82.5
Q ss_pred eeEEe-------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEec
Q psy3765 484 IKKVN-------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIAST 543 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st 543 (592)
|++|| ||++|+||||||+||++++.++|+++ +|++|||||+|||+||+++.+++ ||++|
T Consensus 131 iraID~l~pig~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v-~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~at 209 (461)
T TIGR01039 131 IKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGY-SVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQ 209 (461)
T ss_pred ceeecccCCcccCCEEEeecCCCCChHHHHHHHHHHHHhcCCCe-EEEEEecCCchHHHHHHHHHHhcCCcceeEEEEEC
Confidence 78888 99999999999999999999998654 45569999999999999999764 99999
Q ss_pred CCCCcc----------------------------chHHHHHHHhhccCCCCCCcccCCcCccccCCccccc
Q psy3765 544 FDEPAL----------------------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFF 586 (592)
Q Consensus 544 ~D~~~~----------------------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~f 586 (592)
+|+||. ||+||||+|||++....|+.-+ +.=|+|.-|.
T Consensus 210 sd~p~~~R~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~-----~~GYPpsvfs 275 (461)
T TIGR01039 210 MNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPS-----AVGYQPTLAT 275 (461)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCC-----CCCcCCcHHH
Confidence 999983 9999999999999999988733 3345555443
No 78
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=99.74 E-value=1.2e-18 Score=183.37 Aligned_cols=100 Identities=30% Similarity=0.363 Sum_probs=89.8
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
|+++|+||||||++|++... |++ .++.+||||++||++|.+..+++ ||+||+|+||.
T Consensus 75 ~G~sG~GKTtLl~~Ia~~~~---~~~-~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~ 150 (326)
T cd01136 75 FAGSGVGKSTLLGMIARGTT---ADV-NVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAI 150 (326)
T ss_pred ECCCCCChHHHHHHHhCCCC---CCE-EEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998432 333 46679999999999999988765 99999999983
Q ss_pred ---------------chHHHHHHHhhccCCCCCCcc-cCCcCccccCCcccccccccCC
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKVL-TGGVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~l-sgg~d~~al~~pk~~fg~ar~~ 592 (592)
||+||||+|||++...+|++. ++|..+..++.+.+|+..|+|.
T Consensus 151 AEyfr~~g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~ 209 (326)
T cd01136 151 AEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNS 209 (326)
T ss_pred HHHHHHcCCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCC
Confidence 999999999999999999997 8999999999999999999874
No 79
>PRK06936 type III secretion system ATPase; Provisional
Probab=99.73 E-value=2.8e-18 Score=186.28 Aligned_cols=88 Identities=30% Similarity=0.439 Sum_probs=73.6
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||||++|++ +.++++ |++|||||+|||+||++..+++ ||++|+|+||.
T Consensus 168 ~G~sG~GKStLl~~Ia~-----~~~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~t 242 (439)
T PRK06936 168 FAAAGGGKSTLLASLIR-----SAEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATS 242 (439)
T ss_pred ECCCCCChHHHHHHHhc-----CCCCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999999 444455 5559999999999999998875 99999999984
Q ss_pred ----------------chHHHHHHHhhccCCCCCCcccCCcCccccCCcccccc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFG 587 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg 587 (592)
||+||||+|||++....|+ -|.+--+|...|.
T Consensus 243 iAEyfrd~G~~Vll~~DslTR~A~A~REisl~~ge------pP~~~gyp~svfs 290 (439)
T PRK06936 243 IAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGE------PPTRRGYPPSVFA 290 (439)
T ss_pred HHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCC------CCccccCCccHHH
Confidence 9999999999999988776 4555555555553
No 80
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=99.73 E-value=4e-18 Score=184.89 Aligned_cols=76 Identities=30% Similarity=0.439 Sum_probs=67.6
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||||++|++. .+.++ +|+|||||+|||+||+++.+++ ||++|+|+||.
T Consensus 168 ~G~sG~GKSTLL~~I~~~-----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~t 242 (444)
T PRK08972 168 FAGSGVGKSVLLGMMTRG-----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATT 242 (444)
T ss_pred ECCCCCChhHHHHHhccC-----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999983 33344 4469999999999999998886 99999999984
Q ss_pred ----------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~ 569 (592)
||+||||+||+++....|+.
T Consensus 243 iAEyfrd~G~~VLl~~DslTR~A~A~REIsl~~gep 278 (444)
T PRK08972 243 IAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEP 278 (444)
T ss_pred HHHHHHHcCCCEEEEEcChHHHHHHHHHHHHhcCCC
Confidence 99999999999999998886
No 81
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=99.72 E-value=5.7e-18 Score=174.01 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=69.9
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+|||+| |++|+++ +++++..|+++||||+|||+||++..++. ||++|+|+||.
T Consensus 75 fg~~g~GKt~L~l~~i~~~---~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~a 151 (274)
T cd01132 75 IGDRQTGKTAIAIDTIINQ---KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCA 151 (274)
T ss_pred eCCCCCCccHHHHHHHHHh---cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHH
Confidence 99999999999 8999984 24566667789999999999999999743 99999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCccc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLT 571 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~ls 571 (592)
|||||||+|||++....|+.-+
T Consensus 152 iAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ge~P~ 189 (274)
T cd01132 152 MGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPG 189 (274)
T ss_pred HHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999888777654
No 82
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=99.71 E-value=1.1e-17 Score=183.19 Aligned_cols=87 Identities=17% Similarity=0.321 Sum_probs=75.7
Q ss_pred eeEEe-------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCC-------------
Q psy3765 484 IKKVN-------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG------------- 537 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~------------- 537 (592)
|++|| ||++|+||||||.||++++++.|.++ .|++|||||+|||+||++..++
T Consensus 149 IraID~l~pigkGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv-~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~r 227 (494)
T CHL00060 149 IKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGV-SVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 227 (494)
T ss_pred ceeeeccCCcccCCEEeeecCCCCChhHHHHHHHHHHHHhcCCe-EEEEEeccCchHHHHHHHHHHhcCccccCcccccc
Confidence 78888 99999999999999999977665543 4556999999999999998876
Q ss_pred -cEEEecCCCCcc----------------------------chHHHHHHHhhccCCCCCCccc
Q psy3765 538 -EVIASTFDEPAL----------------------------SVMCKLARAYNTVIPASGKVLT 571 (592)
Q Consensus 538 -~vv~st~D~~~~----------------------------DSiTR~arA~n~~~~~~g~~ls 571 (592)
-||++|+|+||. ||+||||+||+++....|+.-+
T Consensus 228 svvv~atsd~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIsl~~gepP~ 290 (494)
T CHL00060 228 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPS 290 (494)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHHHhcCCCCC
Confidence 399999999983 9999999999999988887643
No 83
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=99.70 E-value=1.9e-17 Score=179.97 Aligned_cols=81 Identities=32% Similarity=0.467 Sum_probs=70.9
Q ss_pred eeEEe-------------cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhcCCc-------EEEe
Q psy3765 484 IKKVN-------------VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSVRGE-------VIAS 542 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~~~~-------vv~s 542 (592)
|++|| |+++|+||||||++|++.. +.++ +++|||||+|||+||+++.+++ ||++
T Consensus 146 ir~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~a 220 (442)
T PRK08927 146 VRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVA 220 (442)
T ss_pred eEEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEE
Confidence 88888 9999999999999999944 3334 5569999999999999988775 9999
Q ss_pred cCCCCcc---------------------------chHHHHHHHhhccCCCCCCc
Q psy3765 543 TFDEPAL---------------------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 543 t~D~~~~---------------------------DSiTR~arA~n~~~~~~g~~ 569 (592)
|+|+||. ||+||||+|||++..+.|+.
T Consensus 221 tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REisl~~ge~ 274 (442)
T PRK08927 221 TSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEP 274 (442)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHHHhcCCC
Confidence 9999983 99999999999998877774
No 84
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=99.70 E-value=1.8e-17 Score=180.45 Aligned_cols=116 Identities=17% Similarity=0.258 Sum_probs=90.9
Q ss_pred ccCCCCCCCeeeeee----cCCCC------CCcccceee------------------eeEEe-------------cCCCC
Q psy3765 455 RRFNLHTGILWKGEI----RVPKN------GERYFALLK------------------IKKVN-------------VASPK 493 (592)
Q Consensus 455 ~~~~l~~gd~~~G~v----~~~~~------~~~~~~l~~------------------v~~in-------------~a~p~ 493 (592)
+.+.+++|+.++|+| ..|.+ .+.+.|+.+ |++|| |+++|
T Consensus 69 ~~~~VpVg~~lLGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G 148 (449)
T TIGR03305 69 GPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAG 148 (449)
T ss_pred CceEEEcChhhcCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCC
Confidence 567788888888888 11111 112223332 77887 99999
Q ss_pred CcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------------
Q psy3765 494 SGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------------- 549 (592)
Q Consensus 494 ~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------------- 549 (592)
+|||+||.||++++.++|.++. |+++||||+|||+||+++.+++ ||++|+|+||.
T Consensus 149 ~GKt~l~~~~~~~~~~~~~~v~-V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfr 227 (449)
T TIGR03305 149 VGKTVLLTEMIHNMVGQHQGVS-IFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFR 227 (449)
T ss_pred CChhHHHHHHHHHHHhcCCCEE-EEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876665433 4459999999999999999865 99999999983
Q ss_pred -----------chHHHHHHHhhccCCCCCCccc
Q psy3765 550 -----------SVMCKLARAYNTVIPASGKVLT 571 (592)
Q Consensus 550 -----------DSiTR~arA~n~~~~~~g~~ls 571 (592)
||+||||+||+++....|+.-+
T Consensus 228 d~~G~~VLl~~DslTR~A~A~REisl~~ge~P~ 260 (449)
T TIGR03305 228 DDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPS 260 (449)
T ss_pred HhcCCceEEEecChHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999988887543
No 85
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=99.69 E-value=5.9e-18 Score=168.86 Aligned_cols=105 Identities=28% Similarity=0.401 Sum_probs=93.4
Q ss_pred eeEEecCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-------
Q psy3765 484 IKKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------- 549 (592)
Q Consensus 484 v~~in~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------- 549 (592)
-+...|+++|+|||+||++|+++..++ .+|+++||||+|||+||++...++ ||++|+|+||.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d----~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD----VVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT----EEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc----ceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 455669999999999999999977555 347779999999999999999765 99999999983
Q ss_pred --------------------chHHHHHHHhhccCCCCCC-cccCCcCccccCCcccccccccCC
Q psy3765 550 --------------------SVMCKLARAYNTVIPASGK-VLTGGVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 550 --------------------DSiTR~arA~n~~~~~~g~-~lsgg~d~~al~~pk~~fg~ar~~ 592 (592)
||+||||+|||++....|+ ...+|.++.+.+.+.+|+..|+++
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~ERag~~ 155 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYERAGKV 155 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHTTSEEB
T ss_pred cchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHHHhhcc
Confidence 9999999999999999999 677999999999999999999874
No 86
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=99.68 E-value=3.8e-17 Score=178.68 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=73.9
Q ss_pred eeEEe-------------cCCCCCcHHHHHHHHHHHHhcC--CCceeEEEEEEeCCchhhHHHHHhcCCc-------EEE
Q psy3765 484 IKKVN-------------VASPKSGKSIILQHIAHAITTN--HSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIA 541 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttll~~ia~~~~~~--~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~ 541 (592)
|++|| |+++|+||||||.|||++..++ +.+..+|+++||||+|||.||++..+++ ||+
T Consensus 129 i~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~ 208 (458)
T TIGR01041 129 ISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFL 208 (458)
T ss_pred eEEEEccCccccCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEE
Confidence 88888 9999999999999999965443 2333456669999999999999999875 999
Q ss_pred ecCCCCcc----------------------------chHHHHHHHhhccCCCCCCc
Q psy3765 542 STFDEPAL----------------------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 542 st~D~~~~----------------------------DSiTR~arA~n~~~~~~g~~ 569 (592)
+|+|+||. ||+||||+||+++....|+.
T Consensus 209 atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gep 264 (458)
T TIGR01041 209 NLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEV 264 (458)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCC
Confidence 99999984 99999999999998877765
No 87
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.66 E-value=5.7e-17 Score=175.65 Aligned_cols=99 Identities=27% Similarity=0.362 Sum_probs=86.0
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
|+++|+||||||++|++... ++. .+++++|||++||+||++..+++ ||++|+|+||.
T Consensus 143 ~G~sG~GKTtLl~~i~~~~~---~~~-gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~ti 218 (413)
T TIGR03497 143 FAGSGVGKSTLLGMIARNAK---ADI-NVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAI 218 (413)
T ss_pred ECCCCCCHHHHHHHHhCCCC---CCe-EEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998432 222 35669999999999999998775 99999999983
Q ss_pred ---------------chHHHHHHHhhccCCCCCCcccC-CcCccccCCcccccccccC
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKVLTG-GVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~lsg-g~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||++....|+.-+. |..+.....+.+++..|.|
T Consensus 219 AEyfr~~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~ 276 (413)
T TIGR03497 219 AEYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN 276 (413)
T ss_pred HHHHHHCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcC
Confidence 99999999999999999999888 8888888888888877764
No 88
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=99.66 E-value=6.8e-17 Score=177.01 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=88.8
Q ss_pred cCCCCCCCeeeeee----cCCCC--------------CCcccceee----------eeEEe-------------cCCCCC
Q psy3765 456 RFNLHTGILWKGEI----RVPKN--------------GERYFALLK----------IKKVN-------------VASPKS 494 (592)
Q Consensus 456 ~~~l~~gd~~~G~v----~~~~~--------------~~~~~~l~~----------v~~in-------------~a~p~~ 494 (592)
.+.+.+|+.++|+| ..|.+ +....|+.| |++|| |+++|+
T Consensus 75 ~~~V~vg~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~ 154 (460)
T PRK04196 75 PLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGL 154 (460)
T ss_pred ccEEEcCcccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCC
Confidence 57788888888888 11222 111222332 88888 999999
Q ss_pred cHHHHHHHHHHHHhcC--CCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc----------------
Q psy3765 495 GKSIILQHIAHAITTN--HSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL---------------- 549 (592)
Q Consensus 495 GKttll~~ia~~~~~~--~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~---------------- 549 (592)
|||||+.|||++...+ +.+..+|+++||||++||+||++..++. ||++|+|+||.
T Consensus 155 GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyf 234 (460)
T PRK04196 155 PHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYL 234 (460)
T ss_pred CccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999965543 2333456669999999999999999765 99999999984
Q ss_pred ------------chHHHHHHHhhccCCCCCCcc
Q psy3765 550 ------------SVMCKLARAYNTVIPASGKVL 570 (592)
Q Consensus 550 ------------DSiTR~arA~n~~~~~~g~~l 570 (592)
||+||||+||+++....|+.-
T Consensus 235 r~d~G~~VLli~DslTR~A~A~REIsl~~gepP 267 (460)
T PRK04196 235 AFEKGMHVLVILTDMTNYCEALREISAAREEVP 267 (460)
T ss_pred HHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCC
Confidence 999999999999988777653
No 89
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=99.65 E-value=1.5e-16 Score=163.73 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=72.7
Q ss_pred eeEEe-------------cCCCCCcHHHHHHHHHHHHhcCC-CceeE-EEEEEeCCchhhHHHHHhcCCc-------EEE
Q psy3765 484 IKKVN-------------VASPKSGKSIILQHIAHAITTNH-SEAIM-IVMLIDERPEEVTEMQRSVRGE-------VIA 541 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttll~~ia~~~~~~~-~~~~~-~v~Li~ER~eEV~d~~~~~~~~-------vv~ 541 (592)
|++|| |+++|+|||+|+.||+++..-|. -++++ |+++||||+|||.||++..+++ ||+
T Consensus 57 IkaID~l~pig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~ 136 (276)
T cd01135 57 ISAIDGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFL 136 (276)
T ss_pred cEeeecccccccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEE
Confidence 78888 99999999999999999654111 11344 5559999999999999999765 889
Q ss_pred ecCCCCcc----------------------------chHHHHHHHhhccCCCCCCcc
Q psy3765 542 STFDEPAL----------------------------SVMCKLARAYNTVIPASGKVL 570 (592)
Q Consensus 542 st~D~~~~----------------------------DSiTR~arA~n~~~~~~g~~l 570 (592)
+|+|+||. ||+||||+||+++....|+.-
T Consensus 137 ~t~~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP 193 (276)
T cd01135 137 NLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVP 193 (276)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHhccCCCC
Confidence 99999983 999999999999998888754
No 90
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.64 E-value=1.4e-16 Score=172.49 Aligned_cols=98 Identities=32% Similarity=0.391 Sum_probs=84.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||||++|++.. +.++ ++++||||++||++|++..+++ ||+||+|+||.
T Consensus 143 ~G~sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~t 217 (411)
T TIGR03496 143 FAGSGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATA 217 (411)
T ss_pred ECCCCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999999999833 3333 5569999999999999999875 99999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCc-ccCCcCccccCCcccccccccC
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~-lsgg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||++..++|+. ...|..+...+...+++..|.|
T Consensus 218 iAEyfr~~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~ 276 (411)
T TIGR03496 218 IAEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGN 276 (411)
T ss_pred HHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcc
Confidence 99999999999999999998 6678888888777787777665
No 91
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=99.62 E-value=4.2e-16 Score=171.27 Aligned_cols=82 Identities=20% Similarity=0.306 Sum_probs=71.2
Q ss_pred eeEEe-------------cCCCCCcHHHH-HHHHHHHHhcCCCcee--EEEEEEeCCchhhHHHHHhcCCc-------EE
Q psy3765 484 IKKVN-------------VASPKSGKSII-LQHIAHAITTNHSEAI--MIVMLIDERPEEVTEMQRSVRGE-------VI 540 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttl-l~~ia~~~~~~~~~~~--~~v~Li~ER~eEV~d~~~~~~~~-------vv 540 (592)
|++|| |+++|+||||| |.||+|+ .+++ .|+++||||++||.||++..+++ ||
T Consensus 150 I~aID~l~pigrGQR~~Ifg~~g~GKT~Lal~~I~~q-----~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV 224 (497)
T TIGR03324 150 LKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQ-----KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVV 224 (497)
T ss_pred CEEEeccCCcccCCEEEeecCCCCCHHHHHHHHHHHh-----cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEE
Confidence 78888 99999999999 8999994 3444 46669999999999999999875 99
Q ss_pred EecCCCCcc---------------------------chHHHHHHHhhccCCCCCCcc
Q psy3765 541 ASTFDEPAL---------------------------SVMCKLARAYNTVIPASGKVL 570 (592)
Q Consensus 541 ~st~D~~~~---------------------------DSiTR~arA~n~~~~~~g~~l 570 (592)
++|+|+||. ||+||+|+||+.+....|+.-
T Consensus 225 ~atsd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~lgepP 281 (497)
T TIGR03324 225 VTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPP 281 (497)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHHhhccCCC
Confidence 999999983 999999999999987776653
No 92
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.62 E-value=3.4e-16 Score=170.89 Aligned_cols=98 Identities=31% Similarity=0.378 Sum_probs=86.6
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||||++|++. .+.++ ++.++|||++||++|++..+++ ||++|+|+||.
T Consensus 169 ~G~sG~GKStLl~~I~~~-----~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t 243 (440)
T TIGR01026 169 FAGSGVGKSTLLGMIARN-----TEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATA 243 (440)
T ss_pred ECCCCCCHHHHHHHHhCC-----CCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999984 33344 5569999999999999888774 99999999984
Q ss_pred ----------------chHHHHHHHhhccCCCCCCc-ccCCcCccccCCcccccccccC
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~-lsgg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||++..++|+. ...|.||.+....++++..|.+
T Consensus 244 ~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~ 302 (440)
T TIGR01026 244 IAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGA 302 (440)
T ss_pred HHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhcc
Confidence 99999999999999999996 8899999999999998877653
No 93
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=99.61 E-value=5.1e-16 Score=168.95 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=87.0
Q ss_pred ccCCCCCCCeeeeee----cCCCC------CCcccce--------ee----------eeEEe-------------cCCCC
Q psy3765 455 RRFNLHTGILWKGEI----RVPKN------GERYFAL--------LK----------IKKVN-------------VASPK 493 (592)
Q Consensus 455 ~~~~l~~gd~~~G~v----~~~~~------~~~~~~l--------~~----------v~~in-------------~a~p~ 493 (592)
+.+.+.+|+.++|+| ..|.+ .+.+.|+ .| |++|| ||++|
T Consensus 72 ~~~~v~vg~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsG 151 (466)
T TIGR01040 72 DILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAG 151 (466)
T ss_pred CccEEEcCcccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCC
Confidence 457788888888888 11111 1222232 22 88888 99999
Q ss_pred CcHHHHHHHHHHHHhc------C-----CCceeEEEEEEeCCchhhHHHHHhcCCc--------EEEecCCCCcc-----
Q psy3765 494 SGKSIILQHIAHAITT------N-----HSEAIMIVMLIDERPEEVTEMQRSVRGE--------VIASTFDEPAL----- 549 (592)
Q Consensus 494 ~GKttll~~ia~~~~~------~-----~~~~~~~v~Li~ER~eEV~d~~~~~~~~--------vv~st~D~~~~----- 549 (592)
+||||||.||+++... + +.+..+|++||||| +||.||++..+++ ||++|+|+||.
T Consensus 152 vGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a 230 (466)
T TIGR01040 152 LPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENGSMERVCLFLNLANDPTIERIIT 230 (466)
T ss_pred CCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 9999999999996541 1 22233466699999 9999999999876 99999999983
Q ss_pred -----------------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~~ 569 (592)
||+||||+||+.+....|+.
T Consensus 231 ~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gep 273 (466)
T TIGR01040 231 PRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEV 273 (466)
T ss_pred HhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCC
Confidence 99999999999998777764
No 94
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=99.61 E-value=5e-16 Score=169.06 Aligned_cols=94 Identities=30% Similarity=0.387 Sum_probs=79.8
Q ss_pred eeEEe-------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEE-EEEeCCchhhHHHHHhcCCc-------EEEe
Q psy3765 484 IKKVN-------------VASPKSGKSIILQHIAHAITTNHSEAIMIV-MLIDERPEEVTEMQRSVRGE-------VIAS 542 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v-~Li~ER~eEV~d~~~~~~~~-------vv~s 542 (592)
|++|| |+++|+||||||++|++ +.+.+++| .+|+||++||++|+++.+++ ||++
T Consensus 163 iraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~-----~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~ 237 (455)
T PRK07960 163 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMAR-----YTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAA 237 (455)
T ss_pred ceeeeecccccCCcEEEEECCCCCCccHHHHHHhC-----CCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEE
Confidence 78888 99999999999999998 44445544 49999999999999988764 9999
Q ss_pred cCCCCcc---------------------------chHHHHHHHhhccCCCCCCcccCCcCccccCCcccccc
Q psy3765 543 TFDEPAL---------------------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFG 587 (592)
Q Consensus 543 t~D~~~~---------------------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg 587 (592)
|+|+||. ||+||||+|||++..++|+ ...+.-|+|.-|+.
T Consensus 238 ~ad~~~~~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge-----~P~~~gypp~~f~~ 304 (455)
T PRK07960 238 PADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGE-----PPATKGYPPSVFAK 304 (455)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcCC-----CCccccCCcchhhh
Confidence 9999983 9999999999999987764 55666778877775
No 95
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.60 E-value=5.6e-16 Score=168.05 Aligned_cols=77 Identities=30% Similarity=0.438 Sum_probs=67.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
|+++|+||||||++|++... |+ ..+|.++|||+|||+||++..+++ ||+||+|+||.
T Consensus 146 ~G~sG~GKTtLl~~I~~~~~---~~-~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~i 221 (418)
T TIGR03498 146 FAGSGVGKSTLLSMLARNTD---AD-VVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAI 221 (418)
T ss_pred ECCCCCChHHHHHHHhCCCC---CC-EEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998432 23 346679999999999999988775 99999999983
Q ss_pred ---------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~ 569 (592)
||+||||+|||++..+.|+.
T Consensus 222 AEyfrd~G~~Vll~~DslTr~A~A~REisl~~gep 256 (418)
T TIGR03498 222 AEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEP 256 (418)
T ss_pred HHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCC
Confidence 99999999999999999886
No 96
>PRK05922 type III secretion system ATPase; Validated
Probab=99.60 E-value=5.6e-16 Score=168.39 Aligned_cols=97 Identities=29% Similarity=0.387 Sum_probs=79.0
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||||++|++. .+.+. ++.+||||++||.+|.+...+. +|++|+|+||.
T Consensus 163 ~G~nG~GKSTLL~~Ia~~-----~~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~t 237 (434)
T PRK05922 163 FSEPGSGKSSLLSTIAKG-----SKSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMT 237 (434)
T ss_pred ECCCCCChHHHHHHHhcc-----CCCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 899999999999999983 33344 5569999999999999877532 99999999984
Q ss_pred ----------------chHHHHHHHhhccCCCCCCcccC-CcCccccCCccccccccc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLTG-GVDSNALQRPKRFFGAAR 590 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~lsg-g~d~~al~~pk~~fg~ar 590 (592)
||+||||+|||++..+.|+..+. |--+.......+|+..|-
T Consensus 238 iAEyfrd~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag 295 (434)
T PRK05922 238 IAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAG 295 (434)
T ss_pred HHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhc
Confidence 99999999999999999999876 556666655556655443
No 97
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=99.59 E-value=8.2e-16 Score=169.90 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=66.5
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeE--EEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc---------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIM--IVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL--------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~--~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~--------- 549 (592)
|+++|+||||| |+||+|+ .++++ |+++||||++||+||++..+++ ||++|+|+||.
T Consensus 167 ~g~~g~GKt~Lal~~i~~~-----~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a 241 (501)
T TIGR00962 167 IGDRQTGKTAVAIDTIINQ-----KDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTG 241 (501)
T ss_pred ecCCCCCccHHHHHHHHhh-----cCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHH
Confidence 99999999999 8999994 34444 5569999999999999999764 99999999983
Q ss_pred ------------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 ------------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 ------------------DSiTR~arA~n~~~~~~g~~ 569 (592)
||+||||+||+.+....|+.
T Consensus 242 ~aiAEyfrd~G~~VLlv~Ddltr~A~A~REisl~lgep 279 (501)
T TIGR00962 242 CTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLLRRP 279 (501)
T ss_pred HHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHhcCCC
Confidence 99999999999998777765
No 98
>PRK09099 type III secretion system ATPase; Provisional
Probab=99.59 E-value=1.2e-15 Score=166.37 Aligned_cols=77 Identities=29% Similarity=0.426 Sum_probs=65.9
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
|+++|+||||||++|++... ++. .++.+||||+|||+||.+..+++ ||++|+|+||.
T Consensus 169 ~G~sG~GKTtLl~~ia~~~~---~d~-~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~ti 244 (441)
T PRK09099 169 FAPAGVGKSTLMGMFARGTQ---CDV-NVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAI 244 (441)
T ss_pred ECCCCCCHHHHHHHHhCCCC---CCe-EEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998432 222 35669999999999999998765 99999999984
Q ss_pred ---------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~ 569 (592)
||+||||+|||++....|+.
T Consensus 245 AEyfrd~G~~VLl~~DslTr~A~A~REisl~~gep 279 (441)
T PRK09099 245 AEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEP 279 (441)
T ss_pred HHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCC
Confidence 99999999999998777654
No 99
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=99.59 E-value=1e-15 Score=168.72 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=66.2
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||| |.||+++- +.++..|+++||||++||.||++..+++ ||+||+|+||.
T Consensus 168 ~g~~g~GKt~Lal~~i~~~~---~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~a 244 (502)
T PRK13343 168 IGDRQTGKTAIAIDAIINQK---DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCA 244 (502)
T ss_pred eCCCCCCccHHHHHHHHhhc---CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHH
Confidence 99999999999 89999942 2333346669999999999999999765 99999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~ 569 (592)
||+||+|+||+.+....|+.
T Consensus 245 iAEyfrd~G~~VLlv~DdlTr~A~A~REisL~l~ep 280 (502)
T PRK13343 245 IAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRP 280 (502)
T ss_pred HHHHHHhCCCCEEEEecchHHHHHHHHHHHHhcCCC
Confidence 99999999999988666653
No 100
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=99.59 E-value=1.1e-15 Score=166.64 Aligned_cols=96 Identities=31% Similarity=0.431 Sum_probs=77.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEE-EEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMI-VMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~-v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||||++|++ +.+.+++ +.+||||++||++|++..++. ||++|+|+||+
T Consensus 174 ~G~sG~GKSTLl~~I~g-----~~~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~a 248 (451)
T PRK05688 174 FAGTGVGKSVLLGMMTR-----FTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTR 248 (451)
T ss_pred ECCCCCCHHHHHHHHhC-----CCCCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999998 3344453 449999999999999999775 99999999984
Q ss_pred ----------------chHHHHHHHhhccCCCCCCc-ccCCcCccccCCcccccccc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAA 589 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~-lsgg~d~~al~~pk~~fg~a 589 (592)
||+||||+|||++..+.|+. -+.|--+.-.....+++..|
T Consensus 249 iAEyfrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERa 305 (451)
T PRK05688 249 IAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERA 305 (451)
T ss_pred HHHHHHHCCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHh
Confidence 99999999999999999987 55566555554444444433
No 101
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=99.58 E-value=1.7e-15 Score=166.02 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=67.0
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeE--EEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc---------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIM--IVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL--------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~--~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~--------- 549 (592)
|+++|+||||| |.||+|+ .++++ |+++||||++||.||++..++. ||++|+|+||.
T Consensus 147 ~g~~g~GKt~Lal~~I~~q-----~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a 221 (485)
T CHL00059 147 IGDRQTGKTAVATDTILNQ-----KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTG 221 (485)
T ss_pred ecCCCCCHHHHHHHHHHhc-----ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999 9999994 44444 5559999999999999999875 99999999983
Q ss_pred ------------------chHHHHHHHhhccCCCCCCcc
Q psy3765 550 ------------------SVMCKLARAYNTVIPASGKVL 570 (592)
Q Consensus 550 ------------------DSiTR~arA~n~~~~~~g~~l 570 (592)
||+||+|+||+.+....|+.-
T Consensus 222 ~aiAEyfr~~G~~VLlv~DdlTr~A~A~REisl~l~epP 260 (485)
T CHL00059 222 AALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPP 260 (485)
T ss_pred hhHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCC
Confidence 999999999999987766643
No 102
>PRK06820 type III secretion system ATPase; Validated
Probab=99.58 E-value=1.7e-15 Score=165.04 Aligned_cols=75 Identities=36% Similarity=0.446 Sum_probs=66.2
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEE-EEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIV-MLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v-~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||||++|++ +.+.+++| .+||||++||++|++..+.+ ||++|+|+||.
T Consensus 169 ~G~sG~GKStLl~~I~~-----~~~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~t 243 (440)
T PRK06820 169 FAAAGVGKSTLLGMLCA-----DSAADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATT 243 (440)
T ss_pred ECCCCCChHHHHHHHhc-----cCCCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998 44455544 59999999999999998653 99999999984
Q ss_pred ----------------chHHHHHHHhhccCCCCCC
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGK 568 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~ 568 (592)
||+||||+||+++..+.|+
T Consensus 244 iAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge 278 (440)
T PRK06820 244 IAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGE 278 (440)
T ss_pred HHHHHHHcCCCEEEEccchhHHHHHHHHHHHhcCC
Confidence 9999999999999988877
No 103
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=99.57 E-value=1.4e-15 Score=165.29 Aligned_cols=98 Identities=26% Similarity=0.325 Sum_probs=80.3
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhcCCc------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSVRGE------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~~~~------vv~st~D~~~~------------ 549 (592)
++++|+|||||+++|++. .++++ +|.++|||++|+++|.+..+++ ||++|+|+||.
T Consensus 163 ~G~sG~GKStLl~~i~~~-----~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~~~a~~i 237 (434)
T PRK08472 163 FAGSGVGKSTLMGMIVKG-----CLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAFCAMSV 237 (434)
T ss_pred ECCCCCCHHHHHHHHhhc-----cCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHHHHHHHH
Confidence 999999999999999984 44444 5569999999999999887765 89999999983
Q ss_pred ---------------chHHHHHHHhhccCCCCCCc-ccCCcCccccCCcccccccccC
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~-lsgg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+||+++..+.|+. -..|--+.......+++..|.+
T Consensus 238 AEyFrd~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~ 295 (434)
T PRK08472 238 AEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGK 295 (434)
T ss_pred HHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhcc
Confidence 99999999999999999986 4557666666666666655543
No 104
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=99.57 E-value=2.1e-15 Score=166.78 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=66.1
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||| |+||+++. +.++..|+++||||++||.||++..++. ||++|+|+||.
T Consensus 168 fg~~g~GKt~lal~~i~~~~---~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~t 244 (502)
T PRK09281 168 IGDRQTGKTAIAIDTIINQK---GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCA 244 (502)
T ss_pred ecCCCCCchHHHHHHHHHhc---CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999 99999943 2233335569999999999999999764 99999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~ 569 (592)
||+||||+||+.+....|+.
T Consensus 245 iAEyfrd~G~~VLli~DdlTr~A~A~REisl~~gep 280 (502)
T PRK09281 245 MGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRP 280 (502)
T ss_pred HHHHHHHcCCCEEEEecCchHHHHHHHHHHHhcCCC
Confidence 99999999999988766664
No 105
>PRK08149 ATP synthase SpaL; Validated
Probab=99.54 E-value=7.1e-15 Score=159.70 Aligned_cols=81 Identities=35% Similarity=0.468 Sum_probs=70.6
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||||++|++ +.++++ ++.+|+||++||++|.++.++. +|++|+|+||.
T Consensus 157 ~G~sG~GKTTLl~~i~~-----~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~t 231 (428)
T PRK08149 157 FASAGCGKTSLMNMLIE-----HSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATT 231 (428)
T ss_pred ECCCCCChhHHHHHHhc-----CCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHH
Confidence 99999999999999998 555555 4459999999999999998763 99999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCccc-CCc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLT-GGV 574 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~ls-gg~ 574 (592)
|||||||+|||++..+.|+.-+ .|.
T Consensus 232 iAE~fr~~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gy 273 (428)
T PRK08149 232 VAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGY 273 (428)
T ss_pred HHHHHHHcCCCEEEEccchHHHHHHHHHhHhhcCCCCccccc
Confidence 9999999999999999998766 443
No 106
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=99.54 E-value=6.4e-15 Score=160.26 Aligned_cols=93 Identities=30% Similarity=0.450 Sum_probs=76.0
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
|+++|+||||||++|++.. +++. .++.++|||++||+||++..+++ +|++|+|+|+.
T Consensus 161 ~G~sG~GKSTLL~~I~~~~---~~d~-~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~ti 236 (433)
T PRK07594 161 FSAPGVGKSTLLAMLCNAP---DADS-NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTI 236 (433)
T ss_pred ECCCCCCccHHHHHhcCCC---CCCE-EEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999833 2232 35569999999999999988653 89999999984
Q ss_pred ---------------chHHHHHHHhhccCCCCCCcccCCcCccccCCccccccccc
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg~ar 590 (592)
||+||||+||+++..+.|+.-+.. -|+|.-|..-||
T Consensus 237 AEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~-----Gyp~svf~~l~~ 287 (433)
T PRK07594 237 AEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG-----EYPPGVFSALPR 287 (433)
T ss_pred HHHHHHCCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCC-----CcCchhHHHhHH
Confidence 999999999999999999988765 355555554443
No 107
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=99.53 E-value=6.7e-15 Score=159.78 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=71.4
Q ss_pred eeEEe-------------cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhcCCc-------EEEe
Q psy3765 484 IKKVN-------------VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSVRGE-------VIAS 542 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~~~~-------vv~s 542 (592)
|++|| |+++|+|||+|+.|||+ +.++++ |+++||||.|||.||++..+++ +|++
T Consensus 128 IkaID~l~pl~rGQkigIF~gaGvgk~~L~~~ia~-----~~~~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~ 202 (436)
T PRK02118 128 IPMIDVFNTLVESQKIPIFSVSGEPYNALLARIAL-----QAEADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIH 202 (436)
T ss_pred cEEeecccccccCCEEEEEeCCCCCHHHHHHHHHH-----hhCCCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEE
Confidence 78888 99999999999999999 444455 4459999999999999998765 8899
Q ss_pred cCCCCcc----------------------------chHHHHHHHhhccCCCCCCcc
Q psy3765 543 TFDEPAL----------------------------SVMCKLARAYNTVIPASGKVL 570 (592)
Q Consensus 543 t~D~~~~----------------------------DSiTR~arA~n~~~~~~g~~l 570 (592)
|+|+||. |||||||+|++++....|+.=
T Consensus 203 ~adep~~~R~~~~~~AltiAEyfrd~g~~~VLli~DdlTr~a~A~REIsl~~ge~P 258 (436)
T PRK02118 203 TASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIP 258 (436)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEeccCchHHHHHHHHHHHhcCCCC
Confidence 9999983 999999999999998888753
No 108
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=99.51 E-value=1.2e-14 Score=161.42 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=66.5
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEE-EEeCCchhhHHHHHhc---------CCc-------EEEecCCCCcc--
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVM-LIDERPEEVTEMQRSV---------RGE-------VIASTFDEPAL-- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~-Li~ER~eEV~d~~~~~---------~~~-------vv~st~D~~~~-- 549 (592)
+++.|||||||++|||+ +.+++++|. +|||||+||+||++.. +++ ||++|+|+|+.
T Consensus 232 ~gg~G~GKT~l~~~lak-----~s~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R 306 (591)
T TIGR01042 232 PGAFGCGKTVISQSLSK-----YSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAR 306 (591)
T ss_pred EcCCCcCHHHHHHHHHh-----ccCcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHH
Confidence 99999999999999999 778888665 9999999999999983 333 99999999973
Q ss_pred -------------------------chHHHHHHHhhccCCCCCC
Q psy3765 550 -------------------------SVMCKLARAYNTVIPASGK 568 (592)
Q Consensus 550 -------------------------DSiTR~arA~n~~~~~~g~ 568 (592)
||+||||+|++.+....|.
T Consensus 307 ~~s~ytg~tiAEYfRD~G~~Vll~~DS~tR~AeAlREIsl~lgE 350 (591)
T TIGR01042 307 EASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 350 (591)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHhccCC
Confidence 9999999999999876664
No 109
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.51 E-value=5.5e-15 Score=161.32 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=78.5
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
++++|+||||||++|++... |+ ..+|.++|||++||+||.++.+++ +|++|+|+|+.
T Consensus 164 ~G~sG~GKStLl~~I~~~~~---~~-~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~i 239 (438)
T PRK07721 164 FAGSGVGKSTLMGMIARNTS---AD-LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAI 239 (438)
T ss_pred ECCCCCCHHHHHHHHhcccC---CC-eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 89999999999999998432 22 246779999999999999886654 88999999984
Q ss_pred ---------------chHHHHHHHhhccCCCCCCc-ccCCcCccccCCcccccc
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFG 587 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~-lsgg~d~~al~~pk~~fg 587 (592)
||+||||+|||++....|+. -+.|+||.....-.+++-
T Consensus 240 AEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~lle 293 (438)
T PRK07721 240 AEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLE 293 (438)
T ss_pred HHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHH
Confidence 99999999999999888883 567999988765555543
No 110
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=99.51 E-value=1.5e-14 Score=153.09 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=67.0
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEE-EEEeCCchhhHHHHHhc-------CCc-------EEEecCCCCcc----
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIV-MLIDERPEEVTEMQRSV-------RGE-------VIASTFDEPAL---- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v-~Li~ER~eEV~d~~~~~-------~~~-------vv~st~D~~~~---- 549 (592)
|+|+|+|||+|+++||+ +.+++++| ++||||++||+||++.. .++ ||++|+|+|+.
T Consensus 163 ~G~~G~GKT~L~~~Iak-----~~~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~ 237 (369)
T cd01134 163 PGPFGCGKTVIQQSLSK-----YSNSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREA 237 (369)
T ss_pred ECCCCCChHHHHHHHHh-----CCCCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHH
Confidence 99999999999999999 77778866 59999999999999983 333 99999999973
Q ss_pred -----------------------chHHHHHHHhhccCCCCCCcc
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGKVL 570 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~~l 570 (592)
||+||||+|||++....|+.-
T Consensus 238 s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs~~l~E~P 281 (369)
T cd01134 238 SIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMP 281 (369)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCC
Confidence 999999999999976666543
No 111
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=99.50 E-value=1.7e-14 Score=160.69 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=67.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEE-EEeCCchhhHHHHHhc-------CCc-------EEEecCCCCcc----
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVM-LIDERPEEVTEMQRSV-------RGE-------VIASTFDEPAL---- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~-Li~ER~eEV~d~~~~~-------~~~-------vv~st~D~~~~---- 549 (592)
++++|||||||++|||+ |.+++++|. +|||||+||+||++.. +|+ |||+|||+|+.
T Consensus 228 ~gg~G~GKT~l~~~lak-----~~~adivVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~ 302 (578)
T TIGR01043 228 PGPFGSGKTVTQHQLAK-----WSDADIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREA 302 (578)
T ss_pred ecCCCCCHHHHHHHHHh-----cCCCCEEEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHH
Confidence 99999999999999999 778888666 9999999999999998 554 99999999983
Q ss_pred -----------------------chHHHHHHHhhccCCCCCC
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGK 568 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~ 568 (592)
||+||||+|++++....|+
T Consensus 303 s~ytg~TiAEYfRD~G~~Vllm~DS~sR~AeAlREIs~~lgE 344 (578)
T TIGR01043 303 SIYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEE 344 (578)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecChhHHHHHHHHHHHhcCC
Confidence 9999999999998766664
No 112
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.50 E-value=1.5e-14 Score=157.27 Aligned_cols=99 Identities=29% Similarity=0.356 Sum_probs=74.4
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
|+++|+|||||+++|++... ++ ..+|.+||||++||+||++..+++ ||++|+|+|+.
T Consensus 162 ~G~sG~GKTtLl~~Ia~~~~---~~-~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~i 237 (432)
T PRK06793 162 FAGSGVGKSTLLGMIAKNAK---AD-INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSI 237 (432)
T ss_pred ECCCCCChHHHHHHHhccCC---CC-eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999432 22 236679999999999999988876 99999999983
Q ss_pred ---------------chHHHHHHHhhccCCCCCCcccCCcCccccCCcccccccccC
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg~ar~ 591 (592)
||+||+|+||+.+....|+.-++|-=+.......+++..|.+
T Consensus 238 AEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 238 AEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred HHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 999999999999864444444443322222234666665543
No 113
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.48 E-value=2.9e-14 Score=155.48 Aligned_cols=78 Identities=27% Similarity=0.371 Sum_probs=67.1
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc------EEEecCCCCcc-------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE------VIASTFDEPAL------------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~------vv~st~D~~~~------------- 549 (592)
|+|+|+||||||++|++.. .|+ ..+|+++|||++||++|.+..+++ ++++++|+||.
T Consensus 171 ~G~SGsGKTTLL~~Ia~l~---~pd-~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iA 246 (450)
T PRK06002 171 FAGSGVGKSTLLAMLARAD---AFD-TVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIA 246 (450)
T ss_pred ECCCCCCHHHHHHHHhCCC---CCC-eeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999832 233 257779999999999998876543 89999999983
Q ss_pred --------------chHHHHHHHhhccCCCCCCcc
Q psy3765 550 --------------SVMCKLARAYNTVIPASGKVL 570 (592)
Q Consensus 550 --------------DSiTR~arA~n~~~~~~g~~l 570 (592)
||+||||+|||++..++|+.-
T Consensus 247 Eyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P 281 (450)
T PRK06002 247 EYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPP 281 (450)
T ss_pred HHHHHcCCCEEEeccchHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999984
No 114
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=99.45 E-value=6.5e-14 Score=154.14 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=65.2
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+||||| |.+|+|+- ..++..|+++||||++||.+|++..++. ||++|+| ||.
T Consensus 149 fg~~gtGKT~lal~~I~~q~---~~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd-~~~~r~~ap~~a~t 224 (507)
T PRK07165 149 IGDRQTGKTHIALNTIINQK---NTNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPST-SPYEQYLAPYVAMA 224 (507)
T ss_pred ecCCCCCccHHHHHHHHHhc---CCCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 99999999999 89999953 2234446669999999999999999764 8899998 552
Q ss_pred ---------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~ 569 (592)
||+||+|+||+.+....|+.
T Consensus 225 iAEyfrd~~dVLlv~DdLTr~A~A~REisLllgep 259 (507)
T PRK07165 225 HAENISYNDDVLIVFDDLTKHANIYREIALLTNKP 259 (507)
T ss_pred HHHHHHhcCceEEEEcChHHHHHHHHHHHhhccCC
Confidence 99999999999999877774
No 115
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.45 E-value=5.1e-14 Score=153.27 Aligned_cols=98 Identities=28% Similarity=0.339 Sum_probs=78.5
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
|+++|+|||||+++|++.. .+++ .++.+||||++||++|.+..+++ |+++|+|+++.
T Consensus 161 ~G~sGaGKSTLl~~I~g~~---~~dv-~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~i 236 (434)
T PRK07196 161 MAGSGVGKSVLLGMITRYT---QADV-VVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAI 236 (434)
T ss_pred ECCCCCCccHHHHHHhccc---CCCe-EEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHH
Confidence 9999999999999999843 2232 34569999999999999887554 89999999873
Q ss_pred ---------------chHHHHHHHhhccCCCCCCc-ccCCcCccccCCccccccccc
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAAR 590 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~-lsgg~d~~al~~pk~~fg~ar 590 (592)
||+||||+||+++....|+. -..|--+.......+++..|.
T Consensus 237 AEyfr~~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag 293 (434)
T PRK07196 237 ATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAG 293 (434)
T ss_pred HHHhhhccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhh
Confidence 99999999999999999998 566776666665555555553
No 116
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=99.41 E-value=2.1e-13 Score=148.54 Aligned_cols=79 Identities=33% Similarity=0.453 Sum_probs=67.9
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
++++|+||||||++|++.. +|+. .++.+||||++||++|++..++. ||++|+|+|++
T Consensus 151 ~G~sG~GKStLl~~I~~~~---~~~~-~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~ 226 (422)
T TIGR02546 151 FAGAGVGKSTLLGMIARGA---SADV-NVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAI 226 (422)
T ss_pred ECCCCCChHHHHHHHhCCC---CCCE-EEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999943 2232 45568999999999999888664 89999999984
Q ss_pred ---------------chHHHHHHHhhccCCCCCCccc
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKVLT 571 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~ls 571 (592)
||+||||+|||++...+|+..+
T Consensus 227 AE~f~~~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~ 263 (422)
T TIGR02546 227 AEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPA 263 (422)
T ss_pred HHHHHHCCCcEEEEEeCchHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999998754
No 117
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=99.39 E-value=3.9e-13 Score=150.11 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=66.1
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEE-EEeCCchhhHHHHHh-------cCCc-------EEEecCCCCcc----
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVM-LIDERPEEVTEMQRS-------VRGE-------VIASTFDEPAL---- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~-Li~ER~eEV~d~~~~-------~~~~-------vv~st~D~~~~---- 549 (592)
++|+|+|||+|+++||+ +.+++++|. ++|||++||+||++. ..|+ +|++|||+|+.
T Consensus 233 pg~~G~GKTvl~~~iak-----~a~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~ 307 (586)
T PRK04192 233 PGPFGSGKTVTQHQLAK-----WADADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREA 307 (586)
T ss_pred ecCCCCCHHHHHHHHHh-----cCCCCEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHH
Confidence 99999999999999999 777888665 999999999999998 3453 99999999973
Q ss_pred -----------------------chHHHHHHHhhccCCCCCC
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGK 568 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~ 568 (592)
||+||||+|++++....|+
T Consensus 308 s~ytgiTiAEYfRd~G~~Vllm~DStSR~AeAlREIS~~l~E 349 (586)
T PRK04192 308 SIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEE 349 (586)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHHHhcCC
Confidence 9999999999998765554
No 118
>PTZ00185 ATPase alpha subunit; Provisional
Probab=99.38 E-value=5.9e-13 Score=146.38 Aligned_cols=81 Identities=30% Similarity=0.413 Sum_probs=64.5
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCC----Ccee-EEEEEEeCCchhhHHHHHhcC--C-----cEEEecCCCCcc------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNH----SEAI-MIVMLIDERPEEVTEMQRSVR--G-----EVIASTFDEPAL------ 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~----~~~~-~~v~Li~ER~eEV~d~~~~~~--~-----~vv~st~D~~~~------ 549 (592)
|+++|+|||+| |.+|+|+...|. .+.. .|.++||||++||.++.+... | -||++|+|+||.
T Consensus 195 fGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Ap 274 (574)
T PTZ00185 195 VGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAP 274 (574)
T ss_pred ecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHH
Confidence 99999999999 899999763321 1333 455699999999999776652 2 199999999983
Q ss_pred ---------------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 ---------------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 ---------------------DSiTR~arA~n~~~~~~g~~ 569 (592)
|||||+|+||+.+....||.
T Consensus 275 y~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLllgrp 315 (574)
T PTZ00185 275 YSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRP 315 (574)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhcCCC
Confidence 99999999999987666654
No 119
>PRK06315 type III secretion system ATPase; Provisional
Probab=99.23 E-value=1.7e-11 Score=134.05 Aligned_cols=93 Identities=32% Similarity=0.365 Sum_probs=74.2
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCcee-EEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAI-MIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~-~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+|||||+++|++.. +.++ .++.+||||++||++|.+..+++ ||+||+|++|+
T Consensus 170 ~G~sG~GKStLl~~I~~~~----~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~rlnp~~va~~ 245 (442)
T PRK06315 170 FAGAGVGKSSLLGMIARNA----EEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTA 245 (442)
T ss_pred ECCCCCCcchHHHHhhccc----ccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHHHhhHHHHHHH
Confidence 9999999999999999843 2334 36679999999999999886542 88999999984
Q ss_pred ----------------chHHHHHHHhhccCCCCCCcccCCcCccccCCccccccccc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg~ar 590 (592)
||+||+|+|++.+..+.|+ .....-++|.-|..-+|
T Consensus 246 IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~ge-----pp~~~gypP~~fS~l~~ 297 (442)
T PRK06315 246 IAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGE-----PPARAGYTPSVFSTLPK 297 (442)
T ss_pred HHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCC-----CccccCCCCchhhHhHH
Confidence 8999999999999876443 45556677777765544
No 120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.83 E-value=1e-07 Score=87.15 Aligned_cols=153 Identities=27% Similarity=0.341 Sum_probs=104.3
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEeCCCCCHHHHHHHHHhH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIASTFDEPAYRHVQVAEMV 205 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~t~d~~~~~r~~~~~~a 205 (592)
.+|+|++|+|||+++.+++...... +-.++|+...+......+..... +..++....+........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 74 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL----- 74 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHH-----
Confidence 5799999999999999999887653 44577888888877665432222 234444544444333322
Q ss_pred HHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCC
Q psy3765 206 LEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSR 285 (592)
Q Consensus 206 ~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d 285 (592)
.++.++.......++++|+++.+.+...+. ..+++..+...+..+.++++. ..+|++.+.-.. .++
T Consensus 75 -~~~~~~~~~~~~~~lviDe~~~~~~~~~~~--------~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~-~~~ 140 (165)
T cd01120 75 -SKAERLRERGGDDLIILDELTRLVRALREI--------REGYPGELDEELRELLERARK----GGVTVIFTLQVP-SGD 140 (165)
T ss_pred -HHHHHHHhCCCCEEEEEEcHHHHHHHHHHH--------HhcCChHHHHHHHHHHHHHhc----CCceEEEEEecC-Ccc
Confidence 456677777788899999999999876543 224555666667777777553 478888764443 334
Q ss_pred CCcc----cccccccccCeEEEech
Q psy3765 286 MDDV----IYEEFKGTGNMEVHLER 306 (592)
Q Consensus 286 ~~dp----I~d~~~~i~dg~i~Ldr 306 (592)
..++ ..+.+....|+.|+|+|
T Consensus 141 ~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 141 KGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred ccCcccccCccceeeecceEEEEeC
Confidence 4444 66778888999999875
No 121
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=98.61 E-value=3.2e-08 Score=117.74 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCCceeEEEE-EEeCCchhhHHHHHhc-------CCc-------EEEecCCCCcc------------
Q psy3765 497 SIILQHIAHAITTNHSEAIMIVM-LIDERPEEVTEMQRSV-------RGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 497 ttll~~ia~~~~~~~~~~~~~v~-Li~ER~eEV~d~~~~~-------~~~-------vv~st~D~~~~------------ 549 (592)
|+.-.|||+ |.+++++|. +||||++||+||++.. +|+ |||+|+|+|+.
T Consensus 670 s~~q~~la~-----~~~adi~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~ti 744 (1017)
T PRK14698 670 TVTQHQLAK-----WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 744 (1017)
T ss_pred HHHHHHHhh-----ccCCCEEEEEeeccchHHHHHHHHHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 666667787 899999666 9999999999999997 443 99999999983
Q ss_pred ---------------chHHHHHHHhhccCCCCCCcc
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKVL 570 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~l 570 (592)
||+||+|+|++.+....|+.-
T Consensus 745 AEyfrd~G~~Vll~~Ds~sR~A~A~REis~~l~e~P 780 (1017)
T PRK14698 745 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMP 780 (1017)
T ss_pred HHHHHHcCCCEEEEeccchHHHHHHHHHHHhcCCCC
Confidence 999999999999987777643
No 122
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.18 E-value=5.5e-06 Score=82.29 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=72.1
Q ss_pred ccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHHhc-CCCeEEEEEEeccchhHHHHHHhhcc--------
Q psy3765 115 NITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAITTN-HSEAIMIVMLIDERPEEVTEMQRSVR-------- 183 (592)
Q Consensus 115 ~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~-~~~~~~I~~lIGeR~~Ev~e~~~~~~-------- 183 (592)
.|||.-+|-++ -+=+|.-.+|.|+||+|||+|+.+++..-.++ +. .|+|+...+.++++.+-.+.+.
T Consensus 2 ~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge--~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~ 79 (226)
T PF06745_consen 2 PTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE--KVLYVSFEEPPEELIENMKSFGWDLEEYED 79 (226)
T ss_dssp --SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTTTS-HHHHHH
T ss_pred CCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC--cEEEEEecCCHHHHHHHHHHcCCcHHHHhh
Confidence 59999999999 44589999999999999999999988655544 33 5789999999998888777661
Q ss_pred --EEEEEeCCCCCHH-HHHHHHHhHHHHHHHHHHcCCcEEEeccchhHH
Q psy3765 184 --GEVIASTFDEPAY-RHVQVAEMVLEKAKRLVEMKKDVIILLDSITRL 229 (592)
Q Consensus 184 --~~vV~~t~d~~~~-~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~ 229 (592)
...+......... .....-...-.+.+.+.+.+. -.+++||++-+
T Consensus 80 ~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsls~l 127 (226)
T PF06745_consen 80 SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSLSAL 127 (226)
T ss_dssp TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETHHHH
T ss_pred cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECHHHH
Confidence 1333333322110 000011122334444555555 57778999988
No 123
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.06 E-value=3.5e-06 Score=90.78 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=57.4
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLE 207 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t 207 (592)
|+=..+.+|||||+|||||+..|+...+.+ +.-+ -++- .-|.| ...+++
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~---f~~~-sAv~---~gvkd------------------------lr~i~e 94 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAA---FEAL-SAVT---SGVKD------------------------LREIIE 94 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCc---eEEe-cccc---ccHHH------------------------HHHHHH
Confidence 344567899999999999999888755432 2111 1111 11111 344567
Q ss_pred HHHHHHHcCCcEEEeccchhHHHHHHhhhcc
Q psy3765 208 KAKRLVEMKKDVIILLDSITRLARAYNTVIP 238 (592)
Q Consensus 208 ~AE~~r~~G~dVlll~Dsltr~A~A~reis~ 238 (592)
.|+.++..|+.++|++|.++||.+++++.-+
T Consensus 95 ~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 95 EARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred HHHHHHhcCCceEEEEehhhhcChhhhhhhh
Confidence 7888888899999999999999999999876
No 124
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.05 E-value=3.4e-05 Score=78.69 Aligned_cols=176 Identities=18% Similarity=0.170 Sum_probs=109.1
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhcc-------
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR------- 183 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~------- 183 (592)
...|||.-+|-++- +=+|...+|.|+||+|||+++.+.+....++ +-.|+|+...|.++++.+....+.
T Consensus 4 ~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~ 81 (260)
T COG0467 4 RIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSFGWDLEVYI 81 (260)
T ss_pred cccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCHHHHHHHHHHcCCCHHHHh
Confidence 47799999999998 5689999999999999999999999887765 556899999999999999887661
Q ss_pred ----EEEEEeCCCCCHHH------HHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCCCCCCCccc
Q psy3765 184 ----GEVIASTFDEPAYR------HVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNAL 253 (592)
Q Consensus 184 ----~~vV~~t~d~~~~~------r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~~Gyp~~l~ 253 (592)
-.++-......... -.....+.-.+-+...+.+ ...+++||++.+...+..- ..
T Consensus 82 ~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~---------------~~ 145 (260)
T COG0467 82 EKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDP---------------AL 145 (260)
T ss_pred hcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHhhhcCch---------------HH
Confidence 11222111111111 0122334444555555656 5667789999766553332 11
Q ss_pred ccchHHHhhcccc-cCCcceeeEEEEEeecCCCCCcccc-cccccccCeEEEechHhHhcCC
Q psy3765 254 QRPKRFFGAARNI-EEGGSLTIIATALIETGSRMDDVIY-EEFKGTGNMEVHLERRLAEKRV 313 (592)
Q Consensus 254 ~~~~~~~erA~~~-~~~GSIT~i~tvlv~tg~d~~dpI~-d~~~~i~dg~i~Ldr~La~~gi 313 (592)
. .++.....++ ++.| .|++.+ .+. ...+.-. .....+.||.|.|+....+-+.
T Consensus 146 ~--r~~~~~l~~~~~~~~-~t~~~~--~~~--~~~~~~~~~~~~~~vdgvI~l~~~~~~~~~ 200 (260)
T COG0467 146 V--RRILLLLKRFLKKLG-VTSLLT--TEA--PVEERGESGVEEYIVDGVIRLDLKEIEGGG 200 (260)
T ss_pred H--HHHHHHHHHHHHhCC-CEEEEE--ecc--cccCCCccceEEEEEEEEEEEeeecccCce
Confidence 1 1222222222 2344 777742 221 1111111 1334489999999998776443
No 125
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=98.05 E-value=4.2e-06 Score=89.38 Aligned_cols=87 Identities=18% Similarity=0.372 Sum_probs=72.2
Q ss_pred eeEEe-------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcC--C-----cEEEec
Q psy3765 484 IKKVN-------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR--G-----EVIAST 543 (592)
Q Consensus 484 v~~in-------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~--~-----~vv~st 543 (592)
|+.|| |.+.|+|||+||+.|.+.|++.|...-+ ..=||||-||=.|+-.... | ..|.+-
T Consensus 135 IKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SV-FaGvGERtREGndLy~Em~es~vl~ktalv~gQ 213 (468)
T COG0055 135 IKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSV-FAGVGERTREGNDLYHEMKESGVLDKTALVFGQ 213 (468)
T ss_pred ceEEEEecccccCceeeeeccCCccceeeHHHHHHHHHHHcCCeEE-EEeccccccchHHHHHHHHhcCCCCceeEEEee
Confidence 78888 9999999999999999999998866544 4468999999888766542 2 188999
Q ss_pred CCCCcc----------------------------chHHHHHHHhhccCCCCCCccc
Q psy3765 544 FDEPAL----------------------------SVMCKLARAYNTVIPASGKVLT 571 (592)
Q Consensus 544 ~D~~~~----------------------------DSiTR~arA~n~~~~~~g~~ls 571 (592)
..|||= |.|-||..|=.++..--||.=|
T Consensus 214 MNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PS 269 (468)
T COG0055 214 MNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPS 269 (468)
T ss_pred cCCCCcceeeehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCcc
Confidence 999991 8999999999999887788655
No 126
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.97 E-value=4.5e-06 Score=72.75 Aligned_cols=97 Identities=22% Similarity=0.191 Sum_probs=57.2
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEK 208 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~ 208 (592)
+|+.++|+||+|+|||+++..|++.+...+ ..++++.+.. ..+....... ......+.....+...+...++.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 73 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGED-ILEEVLDQLL----LIIVGGKKASGSGELRLRLALAL 73 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEE-ccccCHHHHH----hhhhhccCCCCCHHHHHHHHHHH
Confidence 478999999999999999999998776543 1244444432 2222221110 11111222233344444555555
Q ss_pred HHHHHHcCCcEEEeccchhHHHHHHhhh
Q psy3765 209 AKRLVEMKKDVIILLDSITRLARAYNTV 236 (592)
Q Consensus 209 AE~~r~~G~dVlll~Dsltr~A~A~rei 236 (592)
|++.. ..++++|++.++.......
T Consensus 74 ~~~~~----~~viiiDei~~~~~~~~~~ 97 (148)
T smart00382 74 ARKLK----PDVLILDEITSLLDAEQEA 97 (148)
T ss_pred HHhcC----CCEEEEECCcccCCHHHHH
Confidence 55433 6899999998887665554
No 127
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.91 E-value=6.2e-05 Score=74.30 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=69.1
Q ss_pred cccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc-chhHHHHHHhh----c-cEE
Q psy3765 114 ENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE-RPEEVTEMQRS----V-RGE 185 (592)
Q Consensus 114 l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe-R~~Ev~e~~~~----~-~~~ 185 (592)
+.||+..+|-++. +-+|.-..|+|+||+|||+++.+++.....+ +-.++|+...+ ..+.+.++.+. + ...
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~ 78 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSSERFRQIAGDRPERAASSI 78 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHhHChHhhhcCE
Confidence 3699999999996 5688999999999999999999999887654 33567764432 11222232221 1 234
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY 233 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~ 233 (592)
++....+. .+... .+...+.+.+.+ --+|++||++.+.++.
T Consensus 79 ~~~~~~~~--~~~~~----~~~~~~~~~~~~-~~lvvIDsi~~l~~~~ 119 (218)
T cd01394 79 IVFEPMDF--NEQGR----AIQETETFADEK-VDLVVVDSATALYRLE 119 (218)
T ss_pred EEEeCCCH--HHHHH----HHHHHHHHHhcC-CcEEEEechHHhhhHH
Confidence 44444332 22221 222223344434 4578889999997653
No 128
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.85 E-value=9.9e-05 Score=73.92 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=54.1
Q ss_pred ccccccceeecccccc--ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 113 KENITGRIIDLIAPIG--KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 113 ~l~TGiraID~l~Pig--kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
.+.|||.-+|-++.=| +|.-++|.|++|+|||+|+.+++....++ +-.|+|+...+.++++.+-.+.+
T Consensus 6 ~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 6 IISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHC
Confidence 4789999999998644 89999999999999999999997655443 44688998888887765543333
No 129
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.82 E-value=0.00021 Score=79.98 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=100.5
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc--------
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------- 182 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------- 182 (592)
.+.||+..+|-++. +-+|.-.+|.|+||+|||+|+.+++....++. -.|+|+..-+.++++.+-.+.+
T Consensus 254 ~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g--~~~~yis~e~~~~~i~~~~~~~g~~~~~~~ 331 (509)
T PRK09302 254 RISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRG--ERCLLFAFEESRAQLIRNARSWGIDLEKME 331 (509)
T ss_pred cccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCC--CcEEEEEecCCHHHHHHHHHHcCCChHHHh
Confidence 58899999999986 66899999999999999999999987765543 3578888888888777655544
Q ss_pred ---cEEEEEe-CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCCCCCCCcccccchH
Q psy3765 183 ---RGEVIAS-TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQRPKR 258 (592)
Q Consensus 183 ---~~~vV~~-t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~~Gyp~~l~~~~~~ 258 (592)
+-.++.. +......++. ..+.+...+.+.+ ++++||+|-+..+... ..+...+..
T Consensus 332 ~~g~l~i~~~~~~~~~~~~~~------~~i~~~i~~~~~~-~vVIDslt~l~~~~~~--------------~~~~~~l~~ 390 (509)
T PRK09302 332 EKGLLKIICARPESYGLEDHL------IIIKREIEEFKPS-RVAIDPLSALARGGSL--------------NEFRQFVIR 390 (509)
T ss_pred hcCCceeecCCcccCCHHHHH------HHHHHHHHHcCCC-EEEEcCHHHHHHhCCH--------------HHHHHHHHH
Confidence 1112221 1111222222 1233333344555 7889999988654211 011111223
Q ss_pred HHhhcccccCCcceeeEEEEEeecCCCC-Ccccc-cccccccCeEEEechHhH
Q psy3765 259 FFGAARNIEEGGSLTIIATALIETGSRM-DDVIY-EEFKGTGNMEVHLERRLA 309 (592)
Q Consensus 259 ~~erA~~~~~~GSIT~i~tvlv~tg~d~-~dpI~-d~~~~i~dg~i~Ldr~La 309 (592)
|...+++ . .+|++.|..+. +.+ .+... ..+.++.|+-|.|+..--
T Consensus 391 l~~~~k~---~-~~t~l~t~~~~--~~~g~~~~~~~~~~~l~D~vI~L~~~~~ 437 (509)
T PRK09302 391 LTDYLKS---E-EITGLFTNLTP--DFMGSHSITESHISSLTDTWILLQYVEI 437 (509)
T ss_pred HHHHHHh---C-CCeEEEEeccc--cccCCCCCCcCceEEeeeEEEEEEEeec
Confidence 3333332 3 35777653332 222 12222 246678999999987543
No 130
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.79 E-value=3e-05 Score=78.57 Aligned_cols=69 Identities=22% Similarity=0.378 Sum_probs=41.3
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEE-eccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML-IDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAK 210 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~l-IGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE 210 (592)
-++++||||+|||||++-||+.++. +++. +.+ .=++..+...+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~---~~~~-~sg~~i~k~~dl~~i-------------------------------- 95 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGV---NFKI-TSGPAIEKAGDLAAI-------------------------------- 95 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT-----EEE-EECCC--SCHHHHHH--------------------------------
T ss_pred eEEEECCCccchhHHHHHHHhccCC---CeEe-ccchhhhhHHHHHHH--------------------------------
Confidence 4799999999999999999886543 2221 111 11233333222
Q ss_pred HHHHcCCcEEEeccchhHHHHHHhhhc
Q psy3765 211 RLVEMKKDVIILLDSITRLARAYNTVI 237 (592)
Q Consensus 211 ~~r~~G~dVlll~Dsltr~A~A~reis 237 (592)
+...+..-+|++|.++||..++.|+-
T Consensus 96 -l~~l~~~~ILFIDEIHRlnk~~qe~L 121 (233)
T PF05496_consen 96 -LTNLKEGDILFIDEIHRLNKAQQEIL 121 (233)
T ss_dssp -HHT--TT-EEEECTCCC--HHHHHHH
T ss_pred -HHhcCCCcEEEEechhhccHHHHHHH
Confidence 22334556888899999999999984
No 131
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.78 E-value=0.00019 Score=70.94 Aligned_cols=113 Identities=15% Similarity=0.236 Sum_probs=68.3
Q ss_pred cccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcC----CCeEEEEEEeccc--hhHHHHHHhhc---
Q psy3765 114 ENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNH----SEAIMIVMLIDER--PEEVTEMQRSV--- 182 (592)
Q Consensus 114 l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~----~~~~~I~~lIGeR--~~Ev~e~~~~~--- 182 (592)
+.||+..+|-++- +-+|+-..|+|+||+|||+|+.+++......+ .+..++|+...+. ++.+.++.+.+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~ 80 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence 4699999999874 66899999999999999999999988765432 1256777765442 33444433331
Q ss_pred -----cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 183 -----RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 183 -----~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
.-+.+....+ +.+...... .+-++ ...+.--+|++||++.+.+.
T Consensus 81 ~~~~~~~i~~~~~~~--~~~~~~~l~---~~~~~-~~~~~~~lvVIDsis~l~~~ 129 (226)
T cd01393 81 PEEVLDNIYVARPYN--GEQQLEIVE---ELERI-MSSGRVDLVVVDSVAALFRK 129 (226)
T ss_pred hhhhhccEEEEeCCC--HHHHHHHHH---HHHHH-hhcCCeeEEEEcCcchhhhh
Confidence 1123332222 222221111 11111 22344458899999988654
No 132
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.76 E-value=0.00021 Score=71.11 Aligned_cols=113 Identities=18% Similarity=0.291 Sum_probs=68.8
Q ss_pred cccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCC----CeEEEEEEecc--chhHHHHHHhhc---
Q psy3765 114 ENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHS----EAIMIVMLIDE--RPEEVTEMQRSV--- 182 (592)
Q Consensus 114 l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~----~~~~I~~lIGe--R~~Ev~e~~~~~--- 182 (592)
+.||++.+|-++. +-+|.-..|.|+||+|||+|+.+++.......+ +-.++|+...+ +.+...++.+.+
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 3699999999876 669999999999999999999999865433221 24577776555 344554444332
Q ss_pred -----cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHH
Q psy3765 183 -----RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231 (592)
Q Consensus 183 -----~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~ 231 (592)
.-+.+....+ ..... ..-..+-+.+.+.++--+|++||++.+.+
T Consensus 81 ~~~~~~~i~~~~~~~--~~~l~---~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 81 PEEVLDNIYVARAYN--SDHQL---QLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred hHhHhcCEEEEecCC--HHHHH---HHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 1122332222 11111 11111222333443667899999998764
No 133
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.67 E-value=0.00031 Score=70.88 Aligned_cols=67 Identities=22% Similarity=0.153 Sum_probs=53.9
Q ss_pred cccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 114 ENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 114 l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
+.|||.-+|-++. +-+|.-++|.|+||+|||+++.+++....++ +-.|+|+...|.++++.+-.+.+
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEHPVQVRRNMAQF 71 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCCHHHHHHHHHHh
Confidence 6799999999876 4489999999999999999999887654443 34689999999998877654443
No 134
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.63 E-value=0.00015 Score=77.25 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=74.0
Q ss_pred ccccccceeecccccc---ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAPIG---KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~Pig---kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|.++.+| +|.-..|+||+|+|||+|+.+++....+. +-.|+|+..-+.... +..+.+ .-.
T Consensus 35 ~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~--~~a~~lGvd~~~l 110 (325)
T cd00983 35 VIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDP--VYAKKLGVDLDNL 110 (325)
T ss_pred eecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHH--HHHHHcCCCHHHh
Confidence 4889999999999844 78888899999999999999998877664 335777765443332 233332 122
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~ 231 (592)
+++ ..+. ...++.+++.+...+.--+|++||++-+..
T Consensus 111 ~v~-~p~~--------~eq~l~i~~~li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 111 LIS-QPDT--------GEQALEIADSLVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred eec-CCCC--------HHHHHHHHHHHHhccCCCEEEEcchHhhcc
Confidence 333 3221 233566777787777778999999998874
No 135
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.61 E-value=0.00019 Score=76.25 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=73.3
Q ss_pred ccccccceeecccccc---ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAPIG---KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~Pig---kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|.++.+| +|.-..|+|++|+|||+|+.+++....++ +-.|+|+..-+.... +..+.+ .-.
T Consensus 35 ~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~--~~a~~lGvd~~~l 110 (321)
T TIGR02012 35 TISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP--VYARKLGVDIDNL 110 (321)
T ss_pred eecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHH--HHHHHcCCCHHHe
Confidence 4889999999999844 89999999999999999998888777654 345677755443333 123332 122
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~ 231 (592)
++ ...+. . +.++.+++.+...+.--+|++||++-+..
T Consensus 111 ~v-~~p~~--~------eq~l~~~~~li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 111 LV-SQPDT--G------EQALEIAETLVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred EE-ecCCC--H------HHHHHHHHHHhhccCCcEEEEcchhhhcc
Confidence 33 33321 1 23456677777667777899999998875
No 136
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=3.6e-05 Score=78.11 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=51.4
Q ss_pred cccCCCCCCCeeeeeecCCCCCCcccceeeeeEEecCCCCCcHHHHHHHHHHHHhcCCCc-eeEEEEEEeCCch
Q psy3765 454 IRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAITTNHSE-AIMIVMLIDERPE 526 (592)
Q Consensus 454 i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~v~~in~a~p~~GKttll~~ia~~~~~~~~~-~~~~v~Li~ER~e 526 (592)
|-.|+.|++-.+.|...+-... - +.--..+++.++||++||||||++|||.++..... .+.-|+.||||.|
T Consensus 110 I~slniRv~r~v~Gt~~~li~~-l-y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE 181 (308)
T COG3854 110 ISSLNIRVARQVFGTANPLIKD-L-YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE 181 (308)
T ss_pred eceeeeeehhhhhccchHHHHH-H-HhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch
Confidence 5678999999988876531100 0 00011568889999999999999999999887433 2457889999986
No 137
>PRK04328 hypothetical protein; Provisional
Probab=97.61 E-value=0.00026 Score=72.22 Aligned_cols=67 Identities=22% Similarity=0.164 Sum_probs=55.1
Q ss_pred cccccceeecccccc--ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 114 ENITGRIIDLIAPIG--KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 114 l~TGiraID~l~Pig--kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
+.|||.-+|-++.=| +|.-++|.|+||+|||+|+.+++..-.++ +-.|+|+...|.++++.+..+.+
T Consensus 5 v~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 5 VKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHPVQVRRNMRQF 73 (249)
T ss_pred ecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCHHHHHHHHHHc
Confidence 779999999998744 89999999999999999999987664433 33589999999999887765544
No 138
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.60 E-value=0.00036 Score=73.09 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=75.4
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhc----CCCeEEEEEEecc--chhHHHHHHhhc--
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTN----HSEAIMIVMLIDE--RPEEVTEMQRSV-- 182 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~----~~~~~~I~~lIGe--R~~Ev~e~~~~~-- 182 (592)
...||++.+|.++- +-+|.-..|+|+||+|||+++.+++.+.... ..+-.++|+...+ +++.+.++.+.+
T Consensus 76 ~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl 155 (310)
T TIGR02236 76 KITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGL 155 (310)
T ss_pred eecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 47899999999976 5578999999999999999999998765431 0122688998877 577776666543
Q ss_pred ------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCC-cEEEeccchhHHHHH
Q psy3765 183 ------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK-DVIILLDSITRLARA 232 (592)
Q Consensus 183 ------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~-dVlll~Dsltr~A~A 232 (592)
+-+.++...+..+ .. ...-++.+.+.+.+. --+|++||++-+-+.
T Consensus 156 ~~~~~~~~i~i~~~~~~~~--~~---~lld~l~~~i~~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 156 DPDEVLKNIYVARAYNSNH--QM---LLVEKAEDLIKELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred CHHHHhhceEEEecCCHHH--HH---HHHHHHHHHHHhcCCCceEEEEecchHhhhH
Confidence 1123333332222 11 112235566655442 338999999987543
No 139
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.59 E-value=0.00047 Score=77.16 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=57.5
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
.+.|||.-+|-++- +-+|+-++|.|+||+|||+|+.+++....+++ +-.|+|+...|.++++.+-...+
T Consensus 12 ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~-ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 12 KLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRF-DEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred cccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCEEEEEccCCHHHHHHHHHHc
Confidence 37899999999974 66999999999999999999999987655542 33578999999999888876665
No 140
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.58 E-value=0.00041 Score=71.27 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=46.0
Q ss_pred cccccceeecccc----------------ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchh
Q psy3765 114 ENITGRIIDLIAP----------------IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPE 173 (592)
Q Consensus 114 l~TGiraID~l~P----------------igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~ 173 (592)
+.|||.-+|-++. +-+|.-.+|.|+||+|||+++.+++.+..++ +-.|+|+..-+..+
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~~~ 77 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESPAN 77 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCCch
Confidence 5699999999862 3489999999999999999999998876554 33577887766544
No 141
>PRK09354 recA recombinase A; Provisional
Probab=97.51 E-value=0.0003 Score=75.62 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=75.4
Q ss_pred ccccccceeecccccc---ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAPIG---KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~Pig---kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|.++.+| +|.-..|+|++|+|||+|+.+++....+. +-.|+|+..-+.... +..+.+ .-.
T Consensus 40 ~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~--~~a~~lGvdld~l 115 (349)
T PRK09354 40 VISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP--VYAKKLGVDIDNL 115 (349)
T ss_pred eecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH--HHHHHcCCCHHHe
Confidence 4889999999999844 78888899999999999999988877654 445788866554443 333333 122
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~ 231 (592)
+ ++..+ + ...++.+++.+...+.--+|++||++-+..
T Consensus 116 l-i~qp~-~-------~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 116 L-VSQPD-T-------GEQALEIADTLVRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred E-EecCC-C-------HHHHHHHHHHHhhcCCCCEEEEeChhhhcc
Confidence 3 33333 1 233466777777778878999999998874
No 142
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.45 E-value=0.0007 Score=75.60 Aligned_cols=181 Identities=17% Similarity=0.120 Sum_probs=108.0
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc--------
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------- 182 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------- 182 (592)
.+.||+.-+|-++- +-+|.-.+|.|+||+|||+|+.+++....++. -.|+|+.-.|.++++..=.+.+
T Consensus 244 ~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eEs~~~i~~~~~~lg~~~~~~~ 321 (484)
T TIGR02655 244 RVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANK--ERAILFAYEESRAQLLRNAYSWGIDFEEME 321 (484)
T ss_pred ccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCHHHHHHHHHHcCCChHHHh
Confidence 58999999999885 44899999999999999999999998887653 3589999999988887755554
Q ss_pred -cE-EEEEe--CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCCCCCCCcccccchH
Q psy3765 183 -RG-EVIAS--TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQRPKR 258 (592)
Q Consensus 183 -~~-~vV~~--t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~~Gyp~~l~~~~~~ 258 (592)
+. ..+.. +....+.... -.+-+...+.+.+ +|++||++-+..++..- ..-....+
T Consensus 322 ~~g~l~~~~~~p~~~~~~~~~------~~i~~~i~~~~~~-~vvIDsi~~~~~~~~~~--------------~~r~~~~~ 380 (484)
T TIGR02655 322 QQGLLKIICAYPESAGLEDHL------QIIKSEIADFKPA-RIAIDSLSALARGVSNN--------------AFRQFVIG 380 (484)
T ss_pred hCCcEEEEEcccccCChHHHH------HHHHHHHHHcCCC-EEEEcCHHHHHHhcCHH--------------HHHHHHHH
Confidence 11 22222 2222222222 1122223344555 67889999887654211 00001112
Q ss_pred HHhhcccccCCcceeeEEEEEeecCCCC-Cccccc-ccccccCeEEEechHhHhcCCCCCCcCCCC
Q psy3765 259 FFGAARNIEEGGSLTIIATALIETGSRM-DDVIYE-EFKGTGNMEVHLERRLAEKRVYPAINLNKS 322 (592)
Q Consensus 259 ~~erA~~~~~~GSIT~i~tvlv~tg~d~-~dpI~d-~~~~i~dg~i~Ldr~La~~gifPAID~l~S 322 (592)
|...++ .-.+|.+.|...+ .-. ..++++ ...++.|+-|.|...-.+....-+|-|+++
T Consensus 381 l~~~lk----~~~it~~~t~~~~--~~~~~~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K~ 440 (484)
T TIGR02655 381 VTGYAK----QEEITGFFTNTSD--QFMGSHSITDSHISTITDTILMLQYVEIRGEMSRAINVFKM 440 (484)
T ss_pred HHHHHh----hCCCeEEEeeccc--ccccCCccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEEc
Confidence 222222 2256766553332 111 223332 456678999999766555555555655554
No 143
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.44 E-value=0.0009 Score=70.94 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=74.1
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhc----CCCeEEEEEEecc--chhHHHHHHhhcc-
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTN----HSEAIMIVMLIDE--RPEEVTEMQRSVR- 183 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~----~~~~~~I~~lIGe--R~~Ev~e~~~~~~- 183 (592)
.+.||++.+|-++- +-+|.=..|+|+||+|||+|+.+++-..... ..+-.++|+-.-+ +++.+.++.+.+.
T Consensus 77 ~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~ 156 (313)
T TIGR02238 77 KITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGV 156 (313)
T ss_pred eeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 48899999999976 5589999999999999999999988654321 1244788987766 5777777766541
Q ss_pred -------EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 184 -------GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 184 -------~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
.+.++...+ ...... ....+.+.+.+.+ --+|++||++-+-++
T Consensus 157 d~~~~l~~i~~~~~~~--~e~~~~---~l~~l~~~i~~~~-~~LvVIDSisal~r~ 206 (313)
T TIGR02238 157 DPDAVLDNILYARAYT--SEHQME---LLDYLAAKFSEEP-FRLLIVDSIMALFRV 206 (313)
T ss_pred ChHHhcCcEEEecCCC--HHHHHH---HHHHHHHHhhccC-CCEEEEEcchHhhhh
Confidence 223322211 222221 2233344444434 447899999987553
No 144
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.41 E-value=0.00087 Score=70.66 Aligned_cols=114 Identities=20% Similarity=0.297 Sum_probs=73.3
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcC----CCeEEEEEEecc--chhHHHHHHhhc--
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNH----SEAIMIVMLIDE--RPEEVTEMQRSV-- 182 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~----~~~~~I~~lIGe--R~~Ev~e~~~~~-- 182 (592)
.+.||+.-+|-++. +-+|.-..|+|+||+|||+++.+++.+..... .+-.++|+...+ +++.+.++.+.+
T Consensus 83 ~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~ 162 (317)
T PRK04301 83 KITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGL 162 (317)
T ss_pred ccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCC
Confidence 47899999999876 55899999999999999999999987654321 123688998877 566666665443
Q ss_pred ------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcE-EEeccchhHHHHH
Q psy3765 183 ------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDV-IILLDSITRLARA 232 (592)
Q Consensus 183 ------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dV-lll~Dsltr~A~A 232 (592)
..+.++... +...+.. .+...+.+...+.++ +|++||++-+-++
T Consensus 163 ~~~~~l~~i~~~~~~--~~~~~~~----~~~~l~~~i~~~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 163 DPDEVLDNIHVARAY--NSDHQML----LAEKAEELIKEGENIKLVIVDSLTAHFRA 213 (317)
T ss_pred ChHhhhccEEEEeCC--CHHHHHH----HHHHHHHHHhccCceeEEEEECchHHhhh
Confidence 112233222 1122211 122333333333333 8999999987544
No 145
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=97.41 E-value=0.00012 Score=55.48 Aligned_cols=43 Identities=30% Similarity=0.475 Sum_probs=36.0
Q ss_pred HHhhccchhHHHhhcccccccccchhhhhHHHHHHHHHhhccccc
Q psy3765 371 LLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGE 415 (592)
Q Consensus 371 ~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~~~~ 415 (592)
.|+.+.+.++...+.+ ++|+++++|+|+|||++|++++++.+|
T Consensus 1 eL~~~~~~eL~~iAk~--lgI~~~~~~~K~eLI~~Il~~q~~~~g 43 (43)
T PF07498_consen 1 ELKSMTLSELREIAKE--LGIEGYSKMRKQELIFAILKAQAEQGG 43 (43)
T ss_dssp HHHCS-HHHHHHHHHC--TT-TTGCCS-HHHHHHHHHHHHCTSTS
T ss_pred CcccCCHHHHHHHHHH--cCCCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 3678888999999999 899999999999999999999998764
No 146
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.39 E-value=0.0016 Score=63.80 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=61.2
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc-chhHHHHHHhhc-----cEEEEEeCCCCCHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE-RPEEVTEMQRSV-----RGEVIASTFDEPAYRHVQV 201 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe-R~~Ev~e~~~~~-----~~~vV~~t~d~~~~~r~~~ 201 (592)
-+|+-..|+|+||+|||+++.+++.+..++ +-.++|+...+ .++.+.++.+.. .-++++...+ +.+...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~--~~~~~~- 84 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFD--FDEQGV- 84 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCC--HHHHHH-
Confidence 379999999999999999999998877654 34678887764 666666654432 2233443322 222221
Q ss_pred HHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 202 AEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 202 ~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
..-.+.+.+.+.+.+ +|++||++.+.++
T Consensus 85 --~~~~l~~~~~~~~~~-lvVIDSis~l~~~ 112 (209)
T TIGR02237 85 --AIQKTSKFIDRDSAS-LVVVDSFTALYRL 112 (209)
T ss_pred --HHHHHHHHHhhcCcc-EEEEeCcHHHhHH
Confidence 112233434343344 6778999998765
No 147
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.39 E-value=0.00098 Score=66.31 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=50.3
Q ss_pred cccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHH
Q psy3765 114 ENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178 (592)
Q Consensus 114 l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~ 178 (592)
+.||+.-+|-++. +-+|.-++|.|+||+|||+|+.+++....++ +-.++|+...+..+++.+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~~~~i~~~ 66 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEESRESIIRQ 66 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHH
Confidence 5699999999986 4489999999999999999999888655443 3357888887777766544
No 148
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.37 E-value=0.0015 Score=72.66 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=50.8
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHH
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 176 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~ 176 (592)
.+.||+.-+|-++. +-+|+-++|.|+||+|||+|+.+++.++.+++. .++|+.--|..+.+.
T Consensus 75 ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~--kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 75 RFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQM--KVLYVSGEESLQQIK 138 (454)
T ss_pred ccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCC--cEEEEECcCCHHHHH
Confidence 58999999999985 779999999999999999999999988876533 467876656555443
No 149
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.37 E-value=0.0023 Score=64.73 Aligned_cols=67 Identities=18% Similarity=0.130 Sum_probs=49.4
Q ss_pred cccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 114 ENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 114 l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
+.+++.-+|-++. +-+|...+|.|++|+|||+++.+++....++ +..++|+...+.+++..+....+
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQLTTTEFIKQMMSL 74 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHh
Confidence 4466666776665 4479999999999999999987776665543 34578888888888766655443
No 150
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.35 E-value=0.0026 Score=70.57 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=69.5
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEEE
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGEV 186 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~v 186 (592)
.+.||+.-+|-++. +-+|+-.+|.|+||+|||+|+.+++....++ +-.++|+.--|..+.+..-.+.+ ....
T Consensus 61 ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~ 138 (446)
T PRK11823 61 RISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESASQIKLRAERLGLPSDNLY 138 (446)
T ss_pred cccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccHHHHHHHHHHcCCChhcEE
Confidence 58899999999986 5689999999999999999999999887754 33577887666666554433333 1223
Q ss_pred EEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHH
Q psy3765 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231 (592)
Q Consensus 187 V~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~ 231 (592)
+....+ .++ +-+.+ ++.+--+|++||++.+..
T Consensus 139 ~~~e~~---l~~---------i~~~i-~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 139 LLAETN---LEA---------ILATI-EEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred EeCCCC---HHH---------HHHHH-HhhCCCEEEEechhhhcc
Confidence 332222 111 11222 234455789999988743
No 151
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.32 E-value=0.0018 Score=64.34 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=68.9
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec-cchhHHHHHHhh-----ccE
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID-ERPEEVTEMQRS-----VRG 184 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG-eR~~Ev~e~~~~-----~~~ 184 (592)
.+.||+.-+|-++. +-+|.-..|.|+||+|||+++.+++....++ +-.|+|+-.. ..++...++.+. +.-
T Consensus 4 ~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~ 81 (225)
T PRK09361 4 RLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTEGLSPERFKQIAGEDFEELLSN 81 (225)
T ss_pred cccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHhhChHhHhhC
Confidence 57899999999995 4478999999999999999999999887764 3457777665 222333333322 122
Q ss_pred EEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 185 ~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
.++....+ ..+...... .+++... .+--+|++||++.+.+.
T Consensus 82 ~~~~~~~~--~~~~~~~i~---~~~~~~~--~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 82 IIIFEPSS--FEEQSEAIR---KAEKLAK--ENVGLIVLDSATSLYRL 122 (225)
T ss_pred eEEEeCCC--HHHHHHHHH---HHHHHHH--hcccEEEEeCcHHHhHH
Confidence 34444332 112211111 1222222 33448889999988655
No 152
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.28 E-value=0.0042 Score=67.47 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=50.8
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
.+.||+.-+|-++- +-+|+-++|.|+||+|||+|+.+++..+.+++ -.++|+.--|..+.+..
T Consensus 63 ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~EEs~~qi~~ 127 (372)
T cd01121 63 RIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGEESPEQIKL 127 (372)
T ss_pred ccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCcCHHHHHH
Confidence 68899999999985 77899999999999999999999998887653 35677765555555443
No 153
>KOG2028|consensus
Probab=97.24 E-value=0.00066 Score=72.93 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=55.3
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEE-EEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMI-VMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAK 210 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I-~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE 210 (592)
.+.+|||||||||+|++.|+..... ++ ...| .-+.-....+|+++.+. |+
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~-~S-yrfvelSAt~a~t~dvR~ife~---------------------------aq 214 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKK-HS-YRFVELSATNAKTNDVRDIFEQ---------------------------AQ 214 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCC-Cc-eEEEEEeccccchHHHHHHHHH---------------------------HH
Confidence 4678999999999999988875443 33 3233 23444555555555443 33
Q ss_pred HHH-HcCCcEEEeccchhHHHHHHhhhccC
Q psy3765 211 RLV-EMKKDVIILLDSITRLARAYNTVIPA 239 (592)
Q Consensus 211 ~~r-~~G~dVlll~Dsltr~A~A~reis~~ 239 (592)
..- .-+++.++++|.++||.++++++-++
T Consensus 215 ~~~~l~krkTilFiDEiHRFNksQQD~fLP 244 (554)
T KOG2028|consen 215 NEKSLTKRKTILFIDEIHRFNKSQQDTFLP 244 (554)
T ss_pred HHHhhhcceeEEEeHHhhhhhhhhhhcccc
Confidence 333 46889999999999999999999764
No 154
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.22 E-value=0.0028 Score=62.95 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=50.2
Q ss_pred ccceeecccccc--ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 117 TGRIIDLIAPIG--KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 117 GiraID~l~Pig--kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
|+.-+|-++.=| +|.-++|.|+||+|||+++.+++....++ +-.|+|+..-+.++++.+-.+.+
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHc
Confidence 566777776434 79999999999999999999998766554 33578999999888877765554
No 155
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.21 E-value=0.0037 Score=63.68 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=51.8
Q ss_pred ccccccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHH
Q psy3765 113 KENITGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179 (592)
Q Consensus 113 ~l~TGiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~ 179 (592)
-+.||+..+|-++- +.+|+-.+|.|++|+|||+++.+++....+++ +..++|+..-+..+++....
T Consensus 12 ~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 12 EVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEcccCHHHHHHHH
Confidence 47899999999862 44899999999999999999999988776542 44577888777776666543
No 156
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.18 E-value=0.0028 Score=60.31 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=38.5
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
.+|.|+||+|||+|+.+++....+++. .|+|+...+..+++.+..+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~--~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE--PGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC--cEEEEECCCCHHHHHHHHHHc
Confidence 578999999999999999888776533 478889989888887655543
No 157
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.18 E-value=0.0025 Score=68.52 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=75.6
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHh----cCCCeEEEEEEecc--chhHHHHHHhhcc-
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITT----NHSEAIMIVMLIDE--RPEEVTEMQRSVR- 183 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~----~~~~~~~I~~lIGe--R~~Ev~e~~~~~~- 183 (592)
.+.||++.+|-++- |-+|.-..|+|+||+|||+|+.+++-+... ...+-.++|+-.-+ +++.+.++.+.+.
T Consensus 107 ~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~ 186 (344)
T PLN03187 107 RITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 (344)
T ss_pred eecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 58999999999977 447889999999999999999999865432 12235788988877 7888888776551
Q ss_pred ------EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 184 ------GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 184 ------~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
.-+.+.... ...+.... ...+.+.+.+.+ =-+|++||++-+-++
T Consensus 187 d~~~~l~~I~~~~~~-~~e~~~~~---l~~l~~~i~~~~-~~LvVIDSital~r~ 236 (344)
T PLN03187 187 DADAVLDNIIYARAY-TYEHQYNL---LLGLAAKMAEEP-FRLLIVDSVIALFRV 236 (344)
T ss_pred ChhhhcCeEEEecCC-CHHHHHHH---HHHHHHHHHhcC-CCEEEEeCcHHhhhc
Confidence 112332222 22222221 123334444434 447799999988553
No 158
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.15 E-value=0.0019 Score=75.92 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=72.0
Q ss_pred ccccccceeecccc---ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAP---IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~P---igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|.++. +-+|.-..|+|++|+|||+|+.+++....+. +-.|+|+-.-+..+ .+..+.+ ...
T Consensus 40 ~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~--~~~A~~lGvDl~~l 115 (790)
T PRK09519 40 VIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALD--PDYAKKLGVDTDSL 115 (790)
T ss_pred eecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchh--HHHHHHcCCChhHe
Confidence 48899999999998 4489999999999999999998877765554 33567776555444 1233333 222
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
+ +...+ +.++ ++.+++.+.+.+.=-+|++||++-+.
T Consensus 116 l-v~~~~--~~E~------~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 116 L-VSQPD--TGEQ------ALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred E-EecCC--CHHH------HHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 3 33322 1222 45556666666777789999998766
No 159
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=97.11 E-value=0.00054 Score=61.85 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhcccccccccchhhhhHHHH
Q psy3765 337 QKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTIDLEVNSVKRLRKQELM 403 (592)
Q Consensus 337 ~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi 403 (592)
+++++++..|++|++++++++++|.+.++++++..|+ .+.+.+ |++|+.|+ .+ ++.||..+
T Consensus 2 ~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e-~LkQ~~~~-~~----~~~~q~~~ 63 (113)
T PF00306_consen 2 KVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE-FLKQNAFD-PV----PLEKQYVM 63 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH-HT-BSTTT-TT----SSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HcCCCCCC-CC----cCcchhhh
Confidence 5788999999999999999999998999999999999 777777 99999987 44 78888877
No 160
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0007 Score=70.71 Aligned_cols=144 Identities=20% Similarity=0.295 Sum_probs=87.3
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKR 211 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~ 211 (592)
-++++||||.|||||++-||+-++. ++++.-.-.=||+.+..-++..+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgv---n~k~tsGp~leK~gDlaaiLt~L----------------------------- 101 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGV---NLKITSGPALEKPGDLAAILTNL----------------------------- 101 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcC---CeEecccccccChhhHHHHHhcC-----------------------------
Confidence 4789999999999999999987764 33332222336666665555444
Q ss_pred HHHcCCcEEEeccchhHHHHHHhhhccCCCCC------CCCCCCCcccccchHHHhhccccc-CCcceeeEEEEEeecCC
Q psy3765 212 LVEMKKDVIILLDSITRLARAYNTVIPASGKV------LTGGVDSNALQRPKRFFGAARNIE-EGGSLTIIATALIETGS 284 (592)
Q Consensus 212 ~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~------p~~Gyp~~l~~~~~~~~erA~~~~-~~GSIT~i~tvlv~tg~ 284 (592)
+-.|| +++|.++|++.+..|+-=+.=|- ...|.. |+.++ .=---|.+++ .+-. +
T Consensus 102 ---e~~DV-LFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~-------------Arsv~ldLppFTLIGA-TTr~-G 162 (332)
T COG2255 102 ---EEGDV-LFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPA-------------ARSIRLDLPPFTLIGA-TTRA-G 162 (332)
T ss_pred ---CcCCe-EEEehhhhcChhHHHHhhhhhhheeEEEEEccCCc-------------cceEeccCCCeeEeee-cccc-c
Confidence 34555 55699999999999984111000 001111 11111 1223466653 3343 4
Q ss_pred CCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHH
Q psy3765 285 RMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDD 334 (592)
Q Consensus 285 d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~ 334 (592)
-++.|.-|.|.=+...+.|=..+|.+ +..-.+++++.-++++
T Consensus 163 ~lt~PLrdRFGi~~rlefY~~~eL~~--------Iv~r~a~~l~i~i~~~ 204 (332)
T COG2255 163 MLTNPLRDRFGIIQRLEFYTVEELEE--------IVKRSAKILGIEIDEE 204 (332)
T ss_pred cccchhHHhcCCeeeeecCCHHHHHH--------HHHHHHHHhCCCCChH
Confidence 77888888888888888888888876 3333445555545433
No 161
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.10 E-value=0.0022 Score=56.54 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=47.7
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEK 208 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~ 208 (592)
.+.-+.|+|++|+|||+|++.+++.+.+. +..++++.+.+...+.......... -...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 75 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF--------------------LVRL 75 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh--------------------hHhH
Confidence 36679999999999999999999887643 3445566554433222221110000 0111
Q ss_pred HHHHHHcCCcEEEeccchhHH
Q psy3765 209 AKRLVEMKKDVIILLDSITRL 229 (592)
Q Consensus 209 AE~~r~~G~dVlll~Dsltr~ 229 (592)
...........++++|++.++
T Consensus 76 ~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred HHHhhccCCCeEEEEeChhhh
Confidence 222234566789999999875
No 162
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.08 E-value=0.0031 Score=70.45 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=55.3
Q ss_pred cccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 114 ENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 114 l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
+.|||.-+|-++. +-+|.-.+|.|+||+|||+|+.+++..-.+++ +-.|+|+...|.++++.+-.+.+
T Consensus 3 ~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~-ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 3 IRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF-DEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred CCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCHHHHHHHHHHc
Confidence 6799999999987 55999999999999999999999875433321 23588999999999988876665
No 163
>PF05729 NACHT: NACHT domain
Probab=96.99 E-value=0.0015 Score=60.14 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=50.0
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCe----EEEEEEeccchhHHHH--HHhhccEEEEEeCCCCCHHHHHHHHHhH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEA----IMIVMLIDERPEEVTE--MQRSVRGEVIASTFDEPAYRHVQVAEMV 205 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~----~~I~~lIGeR~~Ev~e--~~~~~~~~vV~~t~d~~~~~r~~~~~~a 205 (592)
.+.|.|++|+|||++++.++..+...+... ..+|...++....... +.+.+. ...........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~~~~~~~~------ 70 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLF-----DQLPESIAPIE------ 70 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHH-----HhhccchhhhH------
Confidence 468999999999999999999888765422 2334555554443221 221110 00000000000
Q ss_pred HHHHHHHHHcCCcEEEeccchhHHHH
Q psy3765 206 LEKAKRLVEMKKDVIILLDSITRLAR 231 (592)
Q Consensus 206 ~t~AE~~r~~G~dVlll~Dsltr~A~ 231 (592)
.....+.++..++++++|.+--+..
T Consensus 71 -~~~~~~~~~~~~~llilDglDE~~~ 95 (166)
T PF05729_consen 71 -ELLQELLEKNKRVLLILDGLDELEE 95 (166)
T ss_pred -HHHHHHHHcCCceEEEEechHhccc
Confidence 0223444678999999997755544
No 164
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.96 E-value=0.0064 Score=65.32 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=74.3
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhc----CCCeEEEEEEecc--chhHHHHHHhhc--
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTN----HSEAIMIVMLIDE--RPEEVTEMQRSV-- 182 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~----~~~~~~I~~lIGe--R~~Ev~e~~~~~-- 182 (592)
.+.||+..+|-++. +-+|.=..|+|+||+|||+|+.+++.+.... ..+-.++|+-..+ +++.+.++.+.+
T Consensus 104 ~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~ 183 (342)
T PLN03186 104 QITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGL 183 (342)
T ss_pred eeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCC
Confidence 58999999999766 4478889999999999999999998655421 1223688987777 677777776654
Q ss_pred ------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 183 ------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 183 ------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
+-+.++...+ ...+.... ..+++.+.+ ++=-||++||++-+-+.
T Consensus 184 ~~~~~l~~i~~~~~~~--~e~~~~ll---~~~~~~~~~-~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 184 NGADVLENVAYARAYN--TDHQSELL---LEAASMMAE-TRFALMIVDSATALYRT 233 (342)
T ss_pred ChhhhccceEEEecCC--HHHHHHHH---HHHHHHhhc-cCCCEEEEeCcHHHHHH
Confidence 1233333322 22322221 122333333 44458899999988654
No 165
>PTZ00035 Rad51 protein; Provisional
Probab=96.96 E-value=0.0043 Score=66.41 Aligned_cols=114 Identities=17% Similarity=0.277 Sum_probs=70.9
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhc----CCCeEEEEEEecc--chhHHHHHHhhc--
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTN----HSEAIMIVMLIDE--RPEEVTEMQRSV-- 182 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~----~~~~~~I~~lIGe--R~~Ev~e~~~~~-- 182 (592)
.+.||++.+|-++- +-+|.-..|+|++|+|||+|+.+++...... ..+-.++|+-.-+ +++.+.++.+.+
T Consensus 99 ~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~ 178 (337)
T PTZ00035 99 RITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGL 178 (337)
T ss_pred cccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCC
Confidence 58999999999975 4479999999999999999999998665311 1233577775433 466666665543
Q ss_pred ------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 183 ------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 183 ------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
.-+.+....+ ..+..... ..+.+.+.+ ++--+|++||++-+-+.
T Consensus 179 ~~~~~l~nI~~~~~~~--~e~~~~~l---~~~~~~l~~-~~~~lvVIDSital~r~ 228 (337)
T PTZ00035 179 DPEDVLDNIAYARAYN--HEHQMQLL---SQAAAKMAE-ERFALLIVDSATALFRV 228 (337)
T ss_pred ChHhHhhceEEEccCC--HHHHHHHH---HHHHHHhhc-cCccEEEEECcHHhhhh
Confidence 1122322222 22222111 223333333 45568899999987543
No 166
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.85 E-value=0.0068 Score=64.34 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=69.6
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhc--C--CCeEEEEEEecc--chhHHHHHHhhc--
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTN--H--SEAIMIVMLIDE--RPEEVTEMQRSV-- 182 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~--~--~~~~~I~~lIGe--R~~Ev~e~~~~~-- 182 (592)
.+.||++.+|-++. +-+|.-..|.|+||+|||+|+.+++.++... . .+-.++|+-.-+ +++.+.++.+.+
T Consensus 77 ~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~ 156 (316)
T TIGR02239 77 QLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGL 156 (316)
T ss_pred eeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 58899999999876 4468999999999999999999998754321 1 123577876555 455565555443
Q ss_pred ------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHH
Q psy3765 183 ------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231 (592)
Q Consensus 183 ------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~ 231 (592)
.-+.++...+ +.+..... -.+.+.+.+ ++=-||++||++-+-+
T Consensus 157 ~~~~~l~~i~~~~~~~--~~~~~~~l---~~~~~~~~~-~~~~LvVIDSI~al~r 205 (316)
T TIGR02239 157 NPEDVLDNVAYARAYN--TDHQLQLL---QQAAAMMSE-SRFALLIVDSATALYR 205 (316)
T ss_pred ChHHhhccEEEEecCC--hHHHHHHH---HHHHHhhcc-CCccEEEEECcHHHhh
Confidence 1122332222 22222211 122233333 3445789999998854
No 167
>KOG1350|consensus
Probab=96.78 E-value=0.00075 Score=71.17 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=91.7
Q ss_pred CCCCcccCccccccCCCCCCCeeeeeecCCCCCCcccceee------------------eeEEe-------------cCC
Q psy3765 443 SSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLK------------------IKKVN-------------VAS 491 (592)
Q Consensus 443 ~~~d~~v~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~------------------v~~in-------------~a~ 491 (592)
.|-.|.|.+.-+.|..--.|+.+.- |.|.....|.|++. |+.|| |.+
T Consensus 122 ~Pi~ipVG~~tLGRI~NViGePiDe--rGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGG 199 (521)
T KOG1350|consen 122 YPISIPVGPETLGRIMNVIGEPIDE--RGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG 199 (521)
T ss_pred CceeeecCHHHHhhHHHhcCCcccc--cCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeecc
Confidence 3445677777776666666766643 55666666666654 66666 999
Q ss_pred CCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHH----HHHhc----CCc-----EEEecCCCCcc---------
Q psy3765 492 PKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE----MQRSV----RGE-----VIASTFDEPAL--------- 549 (592)
Q Consensus 492 p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d----~~~~~----~~~-----vv~st~D~~~~--------- 549 (592)
.|+|||+|+..+.|+|.+.|-..-+ ..=+|||-||=.| |+|+- .++ +|+.-..|||-
T Consensus 200 AGVGKTVlImELINNiAKaHGGySV-F~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTg 278 (521)
T KOG1350|consen 200 AGVGKTVLIMELINNIAKAHGGYSV-FAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTG 278 (521)
T ss_pred CCccceeeHHHHHHHHHHhcCCeEE-eeccccccccccHHHHHHHhcCeeeccCCcceEEEEeeccCCCCCceeeeeeec
Confidence 9999999999999999998866544 3468999999765 55442 232 77888888881
Q ss_pred -------------------chHHHHHHHhhccCCCCCCccc
Q psy3765 550 -------------------SVMCKLARAYNTVIPASGKVLT 571 (592)
Q Consensus 550 -------------------DSiTR~arA~n~~~~~~g~~ls 571 (592)
|.|-||..|=..+..--||+=|
T Consensus 279 LTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPS 319 (521)
T KOG1350|consen 279 LTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPS 319 (521)
T ss_pred ccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCcc
Confidence 8999999998887766677644
No 168
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.76 E-value=0.0032 Score=67.47 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=58.9
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhH---HHHHHhhccEEEEEeCCCCCHHHHHHHHHh
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE---VTEMQRSVRGEVIASTFDEPAYRHVQVAEM 204 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~E---v~e~~~~~~~~vV~~t~d~~~~~r~~~~~~ 204 (592)
++++.+.|.|+||+|||+++..+++.+....+++.++++-+-+.... ..++.+.+...- ......+..+ .
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~------~ 125 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHP-PPSSGLSFDE------L 125 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCC-CCCCCCCHHH------H
Confidence 34577999999999999999999998876555777888766543321 223333332100 0001111111 1
Q ss_pred HHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 205 VLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 205 a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
--.+.+++...++.++|++|++..+.
T Consensus 126 ~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 126 FDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred HHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 11234455567888999999998876
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.75 E-value=0.0024 Score=56.74 Aligned_cols=74 Identities=22% Similarity=0.193 Sum_probs=44.6
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~ 212 (592)
++|.||||+|||++++.+++.+ ++.++.+-+++-..+ ....-.......+..|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~~~-------------------~~~~~~~~i~~~~~~~--- 53 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELISS-------------------YAGDSEQKIRDFFKKA--- 53 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHHTS-------------------STTHHHHHHHHHHHHH---
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----ccccccccccccccc-------------------cccccccccccccccc---
Confidence 5899999999999999999865 345555555442211 0111111111122222
Q ss_pred HHcCCcEEEeccchhHHHHHH
Q psy3765 213 VEMKKDVIILLDSITRLARAY 233 (592)
Q Consensus 213 r~~G~dVlll~Dsltr~A~A~ 233 (592)
...++..++++|++..+....
T Consensus 54 ~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 54 KKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp HHTSTSEEEEEETGGGTSHHC
T ss_pred cccccceeeeeccchhccccc
Confidence 123357999999999888775
No 170
>PF13173 AAA_14: AAA domain
Probab=96.73 E-value=0.0039 Score=56.80 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=47.0
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKA 209 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~A 209 (592)
++-+.|.|++|+|||||+.++++... +.-.++|+-... +...+..... +.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~-----------------------~~~~~~~~~~----~~ 51 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDD-----------------------PRDRRLADPD----LL 51 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCC-----------------------HHHHHHhhhh----hH
Confidence 35578999999999999999987544 112344553332 2222222111 45
Q ss_pred HHHHHc--CCcEEEeccchhHHHHHHhhh
Q psy3765 210 KRLVEM--KKDVIILLDSITRLARAYNTV 236 (592)
Q Consensus 210 E~~r~~--G~dVlll~Dsltr~A~A~rei 236 (592)
+++.+. .+..+|++|++.+.......+
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~~~~~~~~l 80 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQYLPDWEDAL 80 (128)
T ss_pred HHHHHhhccCCcEEEEehhhhhccHHHHH
Confidence 556553 467889999998875544433
No 171
>PRK05973 replicative DNA helicase; Provisional
Probab=96.68 E-value=0.012 Score=60.15 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=62.3
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhcc-------EEEEEeCCCC-CHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-------GEVIASTFDE-PAYR 197 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~-------~~vV~~t~d~-~~~~ 197 (592)
-+-+|+-.+|.|+||+|||+++.+++....++ +-.++|+..-|.++++.+=...+. -.+.+...+. .+.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~- 136 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICAD- 136 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHH-
Confidence 46789999999999999999999999877665 335788899888888877555441 1223333332 121
Q ss_pred HHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHH
Q psy3765 198 HVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLA 230 (592)
Q Consensus 198 r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A 230 (592)
.+.+++.+ .+. -+|++|+++-+.
T Consensus 137 ---------~ii~~l~~~~~~-~lVVIDsLq~l~ 160 (237)
T PRK05973 137 ---------YIIARLASAPRG-TLVVIDYLQLLD 160 (237)
T ss_pred ---------HHHHHHHHhhCC-CEEEEEcHHHHh
Confidence 12234443 344 478889998764
No 172
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.67 E-value=0.011 Score=56.71 Aligned_cols=67 Identities=16% Similarity=0.338 Sum_probs=42.0
Q ss_pred cccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcC--------CCeEEEEEEeccchhHHHHHHhhc
Q psy3765 116 ITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNH--------SEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 116 TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~--------~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
++....|.+++ +.+|+-..|.|++|+|||+++.+++..+.+.. ....++|+......+++...+..+
T Consensus 16 ~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~ 92 (193)
T PF13481_consen 16 TGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRAL 92 (193)
T ss_dssp S------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHH
T ss_pred CCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHH
Confidence 33444444443 23799999999999999999999999887631 345677887777776777766654
No 173
>smart00357 CSP Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.
Probab=96.64 E-value=0.0036 Score=49.39 Aligned_cols=48 Identities=29% Similarity=0.562 Sum_probs=38.9
Q ss_pred ceeeeeecCCeeEeeCCCCCCCCCCCCcccCcccccc--CCCCCCCeeeeeecCC
Q psy3765 420 DGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR--FNLHTGILWKGEIRVP 472 (592)
Q Consensus 420 ~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~--~~l~~gd~~~G~v~~~ 472 (592)
.|+++...+||||++..+ .+.|+||+.++++. ..+..||.|..++..+
T Consensus 1 ~G~i~~~~~g~gfv~~~~-----~~~~i~v~~~~~~~~~~~~~~Gd~V~~~i~~~ 50 (64)
T smart00357 1 TGVVKWFNKGFGFIRPDD-----GGKDVFVHPSQIQGGLKSLREGDEVEFKVVSP 50 (64)
T ss_pred CeEEEEEcCCeeEEecCC-----CCccEEEEhHHhhcCCCcCCCCCEEEEEEEEc
Confidence 489999999999999743 22699999998854 5578899999998654
No 174
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.63 E-value=0.019 Score=54.57 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=51.0
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhh----ccEEEEEeCCCCCHHHHHHHHHhHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS----VRGEVIASTFDEPAYRHVQVAEMVLEK 208 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~----~~~~vV~~t~d~~~~~r~~~~~~a~t~ 208 (592)
+++.|++|+|||+++..++..+.++ +..++++.++-+..+..+.+.. ....++.......+.+.. ...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 74 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIA------KRA 74 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHH------HHH
Confidence 5789999999999999999888765 4456777777665444443322 222333322222222221 122
Q ss_pred HHHHHHcCCcEEEeccchhH
Q psy3765 209 AKRLVEMKKDVIILLDSITR 228 (592)
Q Consensus 209 AE~~r~~G~dVlll~Dsltr 228 (592)
-+...++++|+++ +|.--+
T Consensus 75 ~~~~~~~~~d~vi-iDt~g~ 93 (173)
T cd03115 75 IEHAREENFDVVI-VDTAGR 93 (173)
T ss_pred HHHHHhCCCCEEE-EECccc
Confidence 2233456888777 786544
No 175
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=96.62 E-value=0.0013 Score=52.85 Aligned_cols=44 Identities=27% Similarity=0.545 Sum_probs=33.3
Q ss_pred eeeeeecCCeeEeeCCCCCCCCCCCCcccCccccccCCCCCCCeeeeeecC
Q psy3765 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRV 471 (592)
Q Consensus 421 G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~~l~~gd~~~G~v~~ 471 (592)
|++++.++||||+...+ ..+|||||+..+.... .||.|.-++.+
T Consensus 1 G~~~~~~~GfGFv~~~~-----~~~DifIp~~~l~~A~--~gD~V~v~i~~ 44 (58)
T PF08206_consen 1 GTLKIHPKGFGFVIPDD-----GGEDIFIPPRNLNGAM--DGDKVLVRITP 44 (58)
T ss_dssp EEEEE-SSS-EEEEECT------TEEEEE-HHHHTTS---TT-EEEEEEEE
T ss_pred CEEEEEcCCCEEEEECC-----CCCCEEECHHHHCCCC--CCCEEEEEEec
Confidence 78999999999999853 7899999999998654 89999888765
No 176
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.58 E-value=0.0016 Score=58.33 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=49.3
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhc---CCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCC-CCHHHHHHHHHhH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTN---HSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFD-EPAYRHVQVAEMV 205 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~---~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d-~~~~~r~~~~~~a 205 (592)
++-+.|.|++|+|||++++.+++..... .....++++-+.... ...++.+.+-..+-..... .+.. ...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~------~l~ 76 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKSRQTSD------ELR 76 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSSTS-HH------HHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccccCCHH------HHH
Confidence 3456789999999999999999877642 014456666555544 4444444441111111111 1111 111
Q ss_pred HHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 206 LEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 206 ~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
-.+.+.+...+ .++|++|+...+.
T Consensus 77 ~~~~~~l~~~~-~~~lviDe~~~l~ 100 (131)
T PF13401_consen 77 SLLIDALDRRR-VVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHHHHHCT-EEEEEEETTHHHH
T ss_pred HHHHHHHHhcC-CeEEEEeChHhcC
Confidence 22333444433 3899999998875
No 177
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.54 E-value=0.0066 Score=64.37 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=55.5
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCC----eEEEEEEeccch---hHHHHHHhhccE-EEEEeCCCCCHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSE----AIMIVMLIDERP---EEVTEMQRSVRG-EVIASTFDEPAYRHV 199 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~----~~~I~~lIGeR~---~Ev~e~~~~~~~-~vV~~t~d~~~~~r~ 199 (592)
++++.+.|.||+|+|||++++.+.+.+.....+ +.++++-|-+-. .-..++.+.+.. -.-......+..+.
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~- 116 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEV- 116 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHH-
Confidence 345789999999999999999999887643332 666776553322 122333333311 00000111111111
Q ss_pred HHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 200 QVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 200 ~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
--.+-+++...++.++|++|++..+.
T Consensus 117 -----~~~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 117 -----FRRLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred -----HHHHHHHHHhcCCeEEEEECchhhhc
Confidence 11223445556889999999998886
No 178
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.50 E-value=0.0034 Score=68.60 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=46.4
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEK 208 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~ 208 (592)
+...++|+||||+|||+|++.|++... ..+.. +-+......++.++ +..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~---~~~~~-l~a~~~~~~~ir~i---------------------------i~~ 83 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATD---APFEA-LSAVTSGVKDLREV---------------------------IEE 83 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---CCEEE-EecccccHHHHHHH---------------------------HHH
Confidence 344789999999999999999987643 33321 11211111122221 122
Q ss_pred HHHHHHcCCcEEEeccchhHHHHHHhhh
Q psy3765 209 AKRLVEMKKDVIILLDSITRLARAYNTV 236 (592)
Q Consensus 209 AE~~r~~G~dVlll~Dsltr~A~A~rei 236 (592)
+......|+..+|++|++.++.....+.
T Consensus 84 ~~~~~~~g~~~vL~IDEi~~l~~~~q~~ 111 (413)
T PRK13342 84 ARQRRSAGRRTILFIDEIHRFNKAQQDA 111 (413)
T ss_pred HHHhhhcCCceEEEEechhhhCHHHHHH
Confidence 2222235788899999999987766553
No 179
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.46 E-value=0.0072 Score=67.00 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=32.6
Q ss_pred CceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeEC-ccccccccCCCCCeEE
Q psy3765 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS-PSQIRRFNLHTGDFVE 57 (592)
Q Consensus 5 ~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~-~~~~r~~~L~vGd~l~ 57 (592)
..+..+.-++|++.|+.+.+.+.. ....||. .+.+.+-.|+.|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~~~~~~~~~l~~~~~v~ 149 (438)
T PTZ00361 102 GSPLSVGTLEEIIDENHAIVSSSV------GPEYYVNILSFVDKEQLEPGCSVL 149 (438)
T ss_pred CCCcEEEEEEEEeCCCeEEEEeCC------CCEEEEeccCcCCHhhCCCCCEEE
Confidence 345566678899999998888751 1235664 4466777899999874
No 180
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.30 E-value=0.0085 Score=61.30 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=26.1
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+...+..++++||||||||++++.+++.+..
T Consensus 38 ~~~~~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 38 TSKQVLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4456677899999999999999999987654
No 181
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.30 E-value=0.0076 Score=62.47 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.5
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.+-+.|+||||+|||+|++.|++.++
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999988654
No 182
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.29 E-value=0.012 Score=62.88 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=66.6
Q ss_pred ccccccceeecccccc---ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAPIG---KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~Pig---kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||..++|..+++| +|.=+=|+|++++|||+|+-++..+..+. +..|+|+-+ |..- -.++.+.+ .-.
T Consensus 33 ~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~-e~~l-d~~~a~~lGvdl~rl 108 (322)
T PF00154_consen 33 VISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDA-EHAL-DPEYAESLGVDLDRL 108 (322)
T ss_dssp EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEES-SS----HHHHHHTT--GGGE
T ss_pred eEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecC-cccc-hhhHHHhcCccccce
Confidence 4889999999999955 67778899999999999997777665543 556777655 2221 12333333 223
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
+|+-+ + + .+.|+.++|.+...|.-.+|++||+..++
T Consensus 109 lv~~P-~-~-------~E~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 109 LVVQP-D-T-------GEQALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp EEEE--S-S-------HHHHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred EEecC-C-c-------HHHHHHHHHHHhhcccccEEEEecCcccC
Confidence 44432 2 1 24567889999888887788999986653
No 183
>PRK14974 cell division protein FtsY; Provisional
Probab=96.28 E-value=0.025 Score=60.73 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=54.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc-chhHHHHH---HhhccEEEEEeCCCCCHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE-RPEEVTEM---QRSVRGEVIASTFDEPAYRHVQVAE 203 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe-R~~Ev~e~---~~~~~~~vV~~t~d~~~~~r~~~~~ 203 (592)
+++..++++|++|+||||++..++..+.++ +..++++.++- |..-+..+ .+.+..-++.......|. .+++
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~---~v~~ 212 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPA---AVAY 212 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHH---HHHH
Confidence 567899999999999999999999887754 34566677763 33333332 222222233222111121 1123
Q ss_pred hHHHHHHHHHHcCCcEEEeccchhHH
Q psy3765 204 MVLEKAKRLVEMKKDVIILLDSITRL 229 (592)
Q Consensus 204 ~a~t~AE~~r~~G~dVlll~Dsltr~ 229 (592)
.+ .++....|+| +|++|.--|.
T Consensus 213 ~a---i~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 213 DA---IEHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HH---HHHHHhCCCC-EEEEECCCcc
Confidence 33 3344457888 7778865443
No 184
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.017 Score=60.60 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=75.8
Q ss_pred ccccccceeecccccc--ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEE-Eec-cchhHHHHHHhhccEEEEE
Q psy3765 113 KENITGRIIDLIAPIG--KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVM-LID-ERPEEVTEMQRSVRGEVIA 188 (592)
Q Consensus 113 ~l~TGiraID~l~Pig--kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~-lIG-eR~~Ev~e~~~~~~~~vV~ 188 (592)
.+.||.+.+|-++-=| +|.-.=|+||+|+|||+|+.+++.+..+. +-.++|+ .-| -+++....+-.....-+++
T Consensus 41 ~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v 118 (279)
T COG0468 41 AISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQLGVDLLDNLLV 118 (279)
T ss_pred cccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHHHHHhhhcceeE
Confidence 5889999999998833 67777899999999999999998876654 3256765 555 6777777777662223334
Q ss_pred eCCCCCHHHHHHHHHhHHHHHHHHHHcCC--cEEEeccchhHHHHHH
Q psy3765 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKK--DVIILLDSITRLARAY 233 (592)
Q Consensus 189 ~t~d~~~~~r~~~~~~a~t~AE~~r~~G~--dVlll~Dsltr~A~A~ 233 (592)
+..+. ..-++.+++.+...+. ==|+++||++-+-++.
T Consensus 119 ~~~~~--------~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 119 SQPDT--------GEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred ecCCC--------HHHHHHHHHHHHHhccCCCCEEEEecCcccchhh
Confidence 33332 3334445555554444 4578889998776663
No 185
>PRK08118 topology modulation protein; Reviewed
Probab=96.23 E-value=0.0044 Score=59.59 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=28.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEE
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIV 165 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~ 165 (592)
+|+.|+|++|+|||||+++|++..+..+-+++.++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~ 36 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALF 36 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 68999999999999999999988765444455444
No 186
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0078 Score=65.23 Aligned_cols=100 Identities=14% Similarity=0.256 Sum_probs=68.4
Q ss_pred cccccccce---eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe---ccchhHHHHHHhhccEEEEEeCCCCCHHH
Q psy3765 124 IAPIGKGQR---GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI---DERPEEVTEMQRSVRGEVIASTFDEPAYR 197 (592)
Q Consensus 124 l~PigkGQR---~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI---GeR~~Ev~e~~~~~~~~vV~~t~d~~~~~ 197 (592)
|.|+-+|.+ +.|.|++|||||++++.+++.+....++..++|+=| ..+..-...+++.+. ..|..
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~---------~~p~~ 103 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG---------KVPLT 103 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC---------CCCCC
Confidence 555555544 889999999999999999999887666665677643 333334444454442 44444
Q ss_pred HHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 198 HVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 198 r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
+......=-.+-+++..+++.++|++|.+-.+...
T Consensus 104 g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 104 GDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK 138 (366)
T ss_pred CCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccc
Confidence 44444444556677778899999999988776544
No 187
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.22 E-value=0.0053 Score=62.10 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=30.7
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
.+..+.|+||+|+|||+|++.+++.+.++ +..++|+-..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~ 82 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD 82 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence 45678999999999999999999887754 4456676553
No 188
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.14 E-value=0.017 Score=57.94 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=34.3
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
..-+-|+|++|+|||.|++.|++.+.+.+++..++|+-..+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 34689999999999999999999998888998888875543
No 189
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.10 E-value=0.047 Score=58.12 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=33.2
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
.+|+.++++||+|+||||++..|+..+.+. +-.+.++.++-
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecCc
Confidence 579999999999999999999999887754 33455666664
No 190
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.03 E-value=0.012 Score=65.11 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=34.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
.-+.|.|++|+|||.|++.|++.+.+++++..++|+-+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4588999999999999999999999888888888886543
No 191
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.01 E-value=0.011 Score=64.23 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=45.9
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~ 212 (592)
+||+||||||||.++..|++.+.. ..|.+-.|| +.. .- .++-.+..+.....|+..
T Consensus 151 llL~GPPGcGKTllAraiA~elg~-----~~i~vsa~e-------L~s--------k~----vGEsEk~IR~~F~~A~~~ 206 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGI-----EPIVMSAGE-------LES--------EN----AGEPGKLIRQRYREAADI 206 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCC-----CeEEEEHHH-------hhc--------Cc----CCcHHHHHHHHHHHHHHH
Confidence 789999999999999999986543 345554443 111 11 122222334444555544
Q ss_pred H-HcCCcEEEeccchhH
Q psy3765 213 V-EMKKDVIILLDSITR 228 (592)
Q Consensus 213 r-~~G~dVlll~Dsltr 228 (592)
+ .+|+-.+|++|++.-
T Consensus 207 a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 207 IKKKGKMSCLFINDLDA 223 (413)
T ss_pred hhccCCCeEEEEehhhh
Confidence 4 589999999998854
No 192
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.00 E-value=0.043 Score=56.53 Aligned_cols=115 Identities=20% Similarity=0.261 Sum_probs=71.4
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhc----CCCeEEEEEEecc--chhHHHHHHhhc--
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTN----HSEAIMIVMLIDE--RPEEVTEMQRSV-- 182 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~----~~~~~~I~~lIGe--R~~Ev~e~~~~~-- 182 (592)
.+.||++.+|-++- |-.|+=.=|+|+||+|||.|+.+++-++... +.+-.+||+-..- +++...++.+.+
T Consensus 19 ~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~ 98 (256)
T PF08423_consen 19 RISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL 98 (256)
T ss_dssp EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS
T ss_pred eeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc
Confidence 58899999999984 4468888899999999999999988665321 3456788875433 455555555443
Q ss_pred ------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHH
Q psy3765 183 ------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY 233 (592)
Q Consensus 183 ------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~ 233 (592)
.-+.++...+ ..+...... .+...+.+ .+==||++||++.+-+..
T Consensus 99 ~~~~~l~~I~v~~~~~--~~~l~~~L~---~l~~~l~~-~~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 99 DPEEILDNIFVIRVFD--LEELLELLE---QLPKLLSE-SKIKLIVIDSIAALFRSE 149 (256)
T ss_dssp -HHHHHHTEEEEE-SS--HHHHHHHHH---HHHHHHHH-SCEEEEEEETSSHHHHHH
T ss_pred ccchhhhceeeeecCC--HHHHHHHHH---HHHhhccc-cceEEEEecchHHHHHHH
Confidence 2344444433 222222222 23344444 455689999999987653
No 193
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.93 E-value=0.038 Score=55.70 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=35.5
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhc----------CCCeEEEEEEeccchhHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTN----------HSEAIMIVMLIDERPEEVTEM 178 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~----------~~~~~~I~~lIGeR~~Ev~e~ 178 (592)
|+-.+|+|++|+|||+|+.+++..++.- .....++|+..-+...++.+=
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~R 59 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRR 59 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHH
Confidence 5667899999999999999999877631 134467777765555555543
No 194
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.92 E-value=0.059 Score=51.91 Aligned_cols=90 Identities=18% Similarity=0.140 Sum_probs=59.1
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEK 208 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~ 208 (592)
||--+-|.|-+|+|||||+..+.+.+.+.+. .+ +++=|. ++. +.+ .+.-.-+...|...+.-.-.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~--~~-~~LDgD---~lR---~~l-----~~dl~fs~~dR~e~~rr~~~~ 66 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGI--KV-YLLDGD---NLR---HGL-----NADLGFSKEDREENIRRIAEV 66 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS---E-EEEEHH---HHC---TTT-----TTT--SSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCC--cE-EEecCc---chh---hcc-----CCCCCCCHHHHHHHHHHHHHH
Confidence 5677899999999999999999999987643 33 333332 222 222 111133566777777888899
Q ss_pred HHHHHHcCCcEEEeccchhHHHHH
Q psy3765 209 AKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 209 AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
|..|+++|..|++-+-|.++=.+.
T Consensus 67 A~ll~~~G~ivIva~isp~~~~R~ 90 (156)
T PF01583_consen 67 AKLLADQGIIVIVAFISPYREDRE 90 (156)
T ss_dssp HHHHHHTTSEEEEE----SHHHHH
T ss_pred HHHHHhCCCeEEEeeccCchHHHH
Confidence 999999999999988888765444
No 195
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.91 E-value=0.08 Score=55.11 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=53.7
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec-cchhHHHH---HHhhccEEEEEeCC-CCCHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID-ERPEEVTE---MQRSVRGEVIASTF-DEPAYRHVQV 201 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG-eR~~Ev~e---~~~~~~~~vV~~t~-d~~~~~r~~~ 201 (592)
..+++.++++|++|+||||++..+|....+. +..+.++.++ .|...+.+ +.+.....++.... .+|+. .
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~----~ 142 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAA----V 142 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHH----H
Confidence 4567899999999999999999999888654 3455667777 35543333 33444444443322 22322 1
Q ss_pred HHhHHHHHHHHHHcCCcEEEeccchh
Q psy3765 202 AEMVLEKAKRLVEMKKDVIILLDSIT 227 (592)
Q Consensus 202 ~~~a~t~AE~~r~~G~dVlll~Dslt 227 (592)
.+.++ ++...+++|++ ++|.--
T Consensus 143 ~~~~l---~~~~~~~~D~V-iIDT~G 164 (272)
T TIGR00064 143 AFDAI---QKAKARNIDVV-LIDTAG 164 (272)
T ss_pred HHHHH---HHHHHCCCCEE-EEeCCC
Confidence 22222 33345788854 557543
No 196
>PRK09183 transposase/IS protein; Provisional
Probab=95.89 E-value=0.017 Score=59.55 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=30.6
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEE
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVM 166 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~ 166 (592)
+.+|+.++|+||+|+|||+|+..|+....+. +..+.|+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~ 136 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFT 136 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEE
Confidence 7789999999999999999999998776553 3344454
No 197
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.88 E-value=0.015 Score=61.55 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
..++|+||||+|||+|++.+++.+.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhC
Confidence 4689999999999999999988664
No 198
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=95.88 E-value=0.0088 Score=48.04 Aligned_cols=46 Identities=33% Similarity=0.614 Sum_probs=34.5
Q ss_pred EEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCC
Q psy3765 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64 (592)
Q Consensus 12 G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~ 64 (592)
|++++.++||||+.+.+ ..+|+|||+ ......--||.++-++..+.
T Consensus 1 G~~~~~~~GfGFv~~~~-----~~~DifIp~--~~l~~A~~gD~V~v~i~~~~ 46 (58)
T PF08206_consen 1 GTLKIHPKGFGFVIPDD-----GGEDIFIPP--RNLNGAMDGDKVLVRITPPS 46 (58)
T ss_dssp EEEEE-SSS-EEEEECT------TEEEEE-H--HHHTTS-TT-EEEEEEEESS
T ss_pred CEEEEEcCCCEEEEECC-----CCCCEEECH--HHHCCCCCCCEEEEEEecCC
Confidence 88999999999999974 679999999 46678889999999998743
No 199
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.88 E-value=0.087 Score=52.21 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=50.6
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec-cchhHHHHH---HhhccEEEEEeCCCCCHHHHHHHHHhHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID-ERPEEVTEM---QRSVRGEVIASTFDEPAYRHVQVAEMVLE 207 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG-eR~~Ev~e~---~~~~~~~vV~~t~d~~~~~r~~~~~~a~t 207 (592)
-+.++||.|+||||.+..||.....+ +..+-++.++ -|...+.++ -+.+..-++.....+.|.+-.. .
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~------~ 74 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAR------E 74 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHH------H
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHH------H
Confidence 46899999999999999999988876 4445566666 454444333 3333555555544443332211 1
Q ss_pred HHHHHHHcCCcEEEeccch
Q psy3765 208 KAKRLVEMKKDVIILLDSI 226 (592)
Q Consensus 208 ~AE~~r~~G~dVlll~Dsl 226 (592)
.-+++.+++.|++++ |..
T Consensus 75 ~l~~~~~~~~D~vlI-DT~ 92 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLI-DTA 92 (196)
T ss_dssp HHHHHHHTTSSEEEE-EE-
T ss_pred HHHHHhhcCCCEEEE-ecC
Confidence 123455667776654 644
No 200
>PRK08181 transposase; Validated
Probab=95.88 E-value=0.014 Score=60.69 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=31.1
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEE
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~l 167 (592)
-+|+.+.|+||+|+|||.|+..|++.+.++ +..++|.-
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~ 141 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR 141 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee
Confidence 478899999999999999999999887764 44556654
No 201
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.87 E-value=0.065 Score=54.61 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=49.1
Q ss_pred cccccceeeccc-cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 114 ENITGRIIDLIA-PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 114 l~TGiraID~l~-PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
+.||.+.+|-++ -+.+|+=..|-|.||+|||+++.+|+.++..++ +..++|+......+++..
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~~~~l~~ 65 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMSEEELAA 65 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS-HHHHHH
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHH
Confidence 569999999886 567888899999999999999999999988764 356778887777776655
No 202
>PRK07261 topology modulation protein; Provisional
Probab=95.86 E-value=0.0068 Score=58.40 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.4
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+|++|+|++|+|||||+++|++..+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987654
No 203
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.83 E-value=0.023 Score=62.27 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=30.4
Q ss_pred eEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeEC-ccccccccCCCCCeEE
Q psy3765 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS-PSQIRRFNLHTGDFVE 57 (592)
Q Consensus 7 ~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~-~~~~r~~~L~vGd~l~ 57 (592)
+..+.=++|++.++.+.+....+ ...+|. .+.+.+-.|+.|+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~v~ 111 (398)
T PTZ00454 66 PLVIGQFLEMIDSNYGIVSSTSG------SNYYVRILSTLNRELLKPNASVA 111 (398)
T ss_pred CceEEEEEEEEcCCEEEEEcCCC------CEEEEecccccCHhhCCCCCEEE
Confidence 44566688999999998888521 223443 3356677789998875
No 204
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.80 E-value=0.0041 Score=60.28 Aligned_cols=95 Identities=21% Similarity=0.270 Sum_probs=52.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe-ccchh-HHHHHH------hhcc-----------EEEEE
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI-DERPE-EVTEMQ------RSVR-----------GEVIA 188 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI-GeR~~-Ev~e~~------~~~~-----------~~vV~ 188 (592)
+.++-+.|+||+|+|||+|++++.+.... .+..++|+.. ..... .+..+. +.+. ..-+.
T Consensus 18 ~~~~~~~l~G~rg~GKTsLl~~~~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 95 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSLLKEFINELKE--KGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKIS 95 (234)
T ss_dssp --SSEEEEEESTTSSHHHHHHHHHHHCT----EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEE
T ss_pred hcCcEEEEEcCCcCCHHHHHHHHHHHhhh--cCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 34689999999999999999998886633 2323445432 33332 233331 1110 00111
Q ss_pred eCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 189 ~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
... .......-..+.+++...+++++|++|++..+.
T Consensus 96 ~~~------~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 96 KDL------SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp CTS-------GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred hcc------hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 111 111122233445666677878999999998887
No 205
>smart00357 CSP Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.
Probab=95.80 E-value=0.024 Score=44.60 Aligned_cols=48 Identities=35% Similarity=0.663 Sum_probs=38.3
Q ss_pred eEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccc--cccCCCCCeEEEEEECC
Q psy3765 11 DGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIR--RFNLHTGDFVEGEIRVP 63 (592)
Q Consensus 11 ~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r--~~~L~vGd~l~GrV~~p 63 (592)
.|++++..+||||+++.+ .+.|+||+.+.++ ...+..||.++.++..+
T Consensus 1 ~G~i~~~~~g~gfv~~~~-----~~~~i~v~~~~~~~~~~~~~~Gd~V~~~i~~~ 50 (64)
T smart00357 1 TGVVKWFNKGFGFIRPDD-----GGKDVFVHPSQIQGGLKSLREGDEVEFKVVSP 50 (64)
T ss_pred CeEEEEEcCCeeEEecCC-----CCccEEEEhHHhhcCCCcCCCCCEEEEEEEEc
Confidence 489999999999999853 1269999987543 46688899999999753
No 206
>PRK06921 hypothetical protein; Provisional
Probab=95.79 E-value=0.022 Score=59.10 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=35.9
Q ss_pred ceeeccccc--cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 119 RIIDLIAPI--GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 119 raID~l~Pi--gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
+.++-+..+ ..+.-+.++|++|+|||.|+..|++.+.+++ +..++|+-.
T Consensus 104 ~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 104 EYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred HHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 345555443 2477899999999999999999999887642 455677653
No 207
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.77 E-value=0.015 Score=57.35 Aligned_cols=41 Identities=22% Similarity=0.101 Sum_probs=31.5
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
...+.-++|+|++|+|||+|++.+++...+. +..++|+-+.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~ 75 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLA 75 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHH
Confidence 4567789999999999999999999887653 3345666543
No 208
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.74 E-value=0.021 Score=55.28 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=27.5
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccch
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP 172 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~ 172 (592)
+++|.|++|+|||+++..++.... ..++|++.+.-.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~ 38 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPF 38 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCC
Confidence 689999999999999988876432 236788777643
No 209
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.71 E-value=0.027 Score=53.07 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=28.0
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccc
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDER 171 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR 171 (592)
...-+.+.-++|.|++|+|||+|++++...+.+. ... ++.+-+...
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~-~~~-~~~~~~~~~ 63 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER-GGY-VISINCDDS 63 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH-T---EEEEEEETT
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCE-EEEEEEecc
Confidence 4566778889999999999999999999988876 222 444444433
No 210
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.71 E-value=0.013 Score=68.86 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.9
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++-..++|+||||+|||+|++.|++..+
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556789999999999999999987654
No 211
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.70 E-value=0.026 Score=57.06 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=21.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+-++|+|++|+|||||++.+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3688999999999999999987655
No 212
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.69 E-value=0.0044 Score=63.09 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=51.7
Q ss_pred eccccc-cccceeeeecCCCCChhHHHHHHHHH--HHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEe----CCCCC
Q psy3765 122 DLIAPI-GKGQRGLLVASPKSGKSIILQHIAHA--ITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIAS----TFDEP 194 (592)
Q Consensus 122 D~l~Pi-gkGQR~~I~g~~g~GKT~Ll~~Ia~~--i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~----t~d~~ 194 (592)
|.|... ...+.++|+|.+|+|||+|+.++++. +...+ +. ++++-.+..... .++.+.+-..+-.. .....
T Consensus 10 ~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f-~~-v~wv~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~ 86 (287)
T PF00931_consen 10 DWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF-DG-VIWVSLSKNPSL-EQLLEQILRQLGEPDSSISDPKD 86 (287)
T ss_dssp HHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC-TE-EEEEEEES-SCC-HHHHHHHHHHHTCC-STSSCCSS
T ss_pred HHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccc-cc-cccccccccccc-ccccccccccccccccccccccc
Confidence 344432 35678899999999999999999877 33333 43 344555544433 33333320000000 11111
Q ss_pred HHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 195 AYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 195 ~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
.... .-.+.+.+. ++++|+|+||+....
T Consensus 87 ~~~~------~~~l~~~L~--~~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 87 IEEL------QDQLRELLK--DKRCLLVLDDVWDEE 114 (287)
T ss_dssp HHHH------HHHHHHHHC--CTSEEEEEEEE-SHH
T ss_pred cccc------cccchhhhc--cccceeeeeeecccc
Confidence 2221 112233333 559999999987665
No 213
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.64 E-value=0.036 Score=57.00 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=69.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHh-hccEEEEEeCCCCCHHHHHHHHHhHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR-SVRGEVIASTFDEPAYRHVQVAEMVLEKAK 210 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~-~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE 210 (592)
|+.|+|++|+|||+|+..|.......+ ..||+...+...+.-.++- .. +--..+.++ .......-. -.+-+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f---~~I~l~t~~~n~~~~~~i~p~~--i~~~~~~e~-le~~l~~~k--~~I~k 86 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF---DHIFLITPEYNNEYYKYIWPDH--IFKVFDKEE-LEYILIRQK--EKIEK 86 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC---CEEEEEecCCchhhhhhcchhh--ccccccHHH-HHHHHHHHH--HHHHH
Confidence 789999999999999988877655433 4455544444333333221 11 001112221 111111111 12233
Q ss_pred HHH-H-cCC---cEEEeccchhHHHHHHhhhccCCCCCCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCC
Q psy3765 211 RLV-E-MKK---DVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSR 285 (592)
Q Consensus 211 ~~r-~-~G~---dVlll~Dsltr~A~A~reis~~~Ge~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d 285 (592)
+.. . .++ ++||++||+... ..-.+ .+..|+-++|-. .++.+. ++.+ -
T Consensus 87 ~~~k~~~~k~~~~~LiIlDD~~~~-~~k~~-------------------~l~~~~~~gRH~----~is~i~--l~Q~--~ 138 (241)
T PF04665_consen 87 YIKKSPQKKNNPRFLIILDDLGDK-KLKSK-------------------ILRQFFNNGRHY----NISIIF--LSQS--Y 138 (241)
T ss_pred HhhhhcccCCCCCeEEEEeCCCCc-hhhhH-------------------HHHHHHhccccc----ceEEEE--Eeee--c
Confidence 333 2 233 899999998541 01111 145677776654 477773 4432 1
Q ss_pred CCcccccccccccCeEEEec
Q psy3765 286 MDDVIYEEFKGTGNMEVHLE 305 (592)
Q Consensus 286 ~~dpI~d~~~~i~dg~i~Ld 305 (592)
--++.+++...+-.+.+.
T Consensus 139 --~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 139 --FHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred --ccCCHHHhhcceEEEEec
Confidence 223456777777666553
No 214
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.62 E-value=0.083 Score=50.43 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=29.3
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhcCCC
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSE 160 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~ 160 (592)
+.-+|.-+.|.|++|+||||++..|++.+...+.+
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~ 37 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSN 37 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 45678899999999999999999999888754444
No 215
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.61 E-value=0.028 Score=62.53 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=33.0
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
.+.|+|++|+|||.|++.|++.+.+.+++..++|+-..
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 47899999999999999999988877788888887554
No 216
>PRK06893 DNA replication initiation factor; Validated
Probab=95.60 E-value=0.045 Score=55.15 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=27.4
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
+.|+||+|+|||.|++.|++.+.+++.. ++|+-.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~--~~y~~~ 75 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRT--AIYIPL 75 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCC--eEEeeH
Confidence 6899999999999999999988776554 455543
No 217
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.046 Score=59.95 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=65.5
Q ss_pred ccccccceeeccccc--cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeC
Q psy3765 113 KENITGRIIDLIAPI--GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIAST 190 (592)
Q Consensus 113 ~l~TGiraID~l~Pi--gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t 190 (592)
.+.||+.=+|-.+== .+|+=++|=|+||.||||||-|++.+++++. .+.|+.=-|....+.=--+.+..
T Consensus 74 Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~QiklRA~RL~~------ 144 (456)
T COG1066 74 RISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIKLRADRLGL------ 144 (456)
T ss_pred cccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHHHHHHHHhCC------
Confidence 688999888877654 6899999999999999999999999998764 57787654444444333333310
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchh
Q psy3765 191 FDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSIT 227 (592)
Q Consensus 191 ~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dslt 227 (592)
+..+.+..+++-++-=..-.++-+--++++||+-
T Consensus 145 ---~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 145 ---PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred ---CccceEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 0011111222222222222345666788889984
No 218
>PRK12377 putative replication protein; Provisional
Probab=95.56 E-value=0.034 Score=57.26 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=29.1
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
.+-+.|+|++|+|||.|+..|++.+.++ +..++|+-+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH
Confidence 3568999999999999999999988764 344555544
No 219
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.068 Score=57.22 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=58.3
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc-chhHHHH---HHhhccEEEEE-eCCCCCHHHHHHHHHh
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE-RPEEVTE---MQRSVRGEVIA-STFDEPAYRHVQVAEM 204 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe-R~~Ev~e---~~~~~~~~vV~-~t~d~~~~~r~~~~~~ 204 (592)
---++++|-.|+||||-+.-||+...++ +..|++++++- |.--+.. |-+.+...+|. ....+|+. ++|-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa----VafD 212 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQ--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAA----VAFD 212 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHC--CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH----HHHH
Confidence 4568999999999999999999998875 55677777765 3222222 33333566776 34555654 5666
Q ss_pred HHHHHHHHHHcCCcEEEe
Q psy3765 205 VLEKAKRLVEMKKDVIIL 222 (592)
Q Consensus 205 a~t~AE~~r~~G~dVlll 222 (592)
|+..|+ .+|.|||++
T Consensus 213 Ai~~Ak---ar~~Dvvli 227 (340)
T COG0552 213 AIQAAK---ARGIDVVLI 227 (340)
T ss_pred HHHHHH---HcCCCEEEE
Confidence 666665 799999885
No 220
>PRK06526 transposase; Provisional
Probab=95.50 E-value=0.023 Score=58.53 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=28.4
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEE
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIV 165 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~ 165 (592)
+++.++|+||+|+|||+|+..|+..+.+. +..+.|
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f 131 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLF 131 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC--CCchhh
Confidence 68899999999999999999998877654 334444
No 221
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.0095 Score=61.24 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=25.9
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+.+.+|+-+.|+||+|||||||++.||-
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999999997764
No 222
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.49 E-value=0.0097 Score=51.63 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=30.0
Q ss_pred EEecCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHH
Q psy3765 486 KVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 531 (592)
Q Consensus 486 ~in~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~ 531 (592)
.+-++|||+||||+++.||+.+...+ .-++.+-.+...+...+
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLD 47 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHH
Confidence 34589999999999999999777664 23444555555544433
No 223
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.49 E-value=0.017 Score=56.03 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=53.5
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccc-hhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDER-PEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKR 211 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR-~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~ 211 (592)
++|.|++|+|||+++.+++.. + . -.++|++..+. ..|+.+-++..+-. . ..+....+....+++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~-~-~~~~y~at~~~~d~em~~rI~~H~~~-------R--~~~w~t~E~~~~l~~~ 67 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---L-G-GPVTYIATAEAFDDEMAERIARHRKR-------R--PAHWRTIETPRDLVSA 67 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---c-C-CCeEEEEccCcCCHHHHHHHHHHHHh-------C--CCCceEeecHHHHHHH
Confidence 579999999999999988764 2 2 24677766654 44566655443100 0 0001112333445555
Q ss_pred HHHc-CCcEEEeccchhHHHHHHhh
Q psy3765 212 LVEM-KKDVIILLDSITRLARAYNT 235 (592)
Q Consensus 212 ~r~~-G~dVlll~Dsltr~A~A~re 235 (592)
+.+. +.+ +|++|++|-|......
T Consensus 68 l~~~~~~~-~VLIDclt~~~~n~l~ 91 (169)
T cd00544 68 LKELDPGD-VVLIDCLTLWVTNLLF 91 (169)
T ss_pred HHhcCCCC-EEEEEcHhHHHHHhCC
Confidence 5543 444 6889999999987653
No 224
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.43 E-value=0.034 Score=62.82 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=48.0
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCC---CeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHS---EAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEK 208 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~---~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~ 208 (592)
.+++.||||||||++++.+++.+..... .....|+-+- .. ++.... .++..+........
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~--~~---eLl~ky------------vGete~~ir~iF~~ 280 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK--GP---ELLNKY------------VGETERQIRLIFQR 280 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc--ch---hhcccc------------cchHHHHHHHHHHH
Confidence 4999999999999999999987764311 1122232211 11 111110 11111222333445
Q ss_pred HHHHHHcCCcEEEeccchhHHHH
Q psy3765 209 AKRLVEMKKDVIILLDSITRLAR 231 (592)
Q Consensus 209 AE~~r~~G~dVlll~Dsltr~A~ 231 (592)
|...+..|+.++|++|++..++.
T Consensus 281 Ar~~a~~g~p~IIfIDEiD~L~~ 303 (512)
T TIGR03689 281 AREKASDGRPVIVFFDEMDSIFR 303 (512)
T ss_pred HHHHhhcCCCceEEEehhhhhhc
Confidence 55555568899999999987764
No 225
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.42 E-value=0.012 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.8
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+++|.|+||+||||++++|++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999865
No 226
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.41 E-value=0.14 Score=48.10 Aligned_cols=75 Identities=19% Similarity=0.109 Sum_probs=42.3
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~ 212 (592)
+.|.|.+|+|||||++.|+..+...... ++++ ...++.+.+..- ....+..+..........|+.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~--~~~i----~~d~~r~~l~~~--------~~~~~~~~~~~~~~~~~~a~~l 67 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRP--VYVL----DGDNVRHGLNKD--------LGFSREDREENIRRIAEVAKLL 67 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCC--EEEE----cCHHHHHhhhhc--------cCCCcchHHHHHHHHHHHHHHH
Confidence 5789999999999999999887643322 3332 223333322110 1111223333333445567777
Q ss_pred HHcCCcEEE
Q psy3765 213 VEMKKDVII 221 (592)
Q Consensus 213 r~~G~dVll 221 (592)
.++|.+|++
T Consensus 68 ~~~G~~VIi 76 (149)
T cd02027 68 ADAGLIVIA 76 (149)
T ss_pred HhCCCEEEE
Confidence 778865444
No 227
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.034 Score=63.38 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=23.7
Q ss_pred cccce-eeeecCCCCChhHHHHHHHHHHHh
Q psy3765 128 GKGQR-GLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 128 gkGQR-~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
++... .++.||+|+|||+++..+++.++.
T Consensus 35 ~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 35 QKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444 578999999999999999998764
No 228
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.34 E-value=0.072 Score=57.17 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=57.2
Q ss_pred eeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhH----H----HHHH--hhccEEEEE
Q psy3765 120 IIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE----V----TEMQ--RSVRGEVIA 188 (592)
Q Consensus 120 aID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~E----v----~e~~--~~~~~~vV~ 188 (592)
.+..+.| .|+.-+++|.|+||+|||||+..+...+... +..+.++.++-.... . ..+. ..-..+++-
T Consensus 45 l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~--g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r 122 (332)
T PRK09435 45 LLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ--GHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIR 122 (332)
T ss_pred HHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEE
Confidence 3444444 5667799999999999999999999888754 445566666643321 1 0111 111234555
Q ss_pred eCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEe
Q psy3765 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIIL 222 (592)
Q Consensus 189 ~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll 222 (592)
++......-- .+.......+.+...|+|++|+
T Consensus 123 ~~~~~~~l~~--~a~~~~~~~~~~~~~g~d~vii 154 (332)
T PRK09435 123 PSPSSGTLGG--VARKTRETMLLCEAAGYDVILV 154 (332)
T ss_pred ecCCcccccc--hHHHHHHHHHHHhccCCCEEEE
Confidence 5554322210 1223333444455678998776
No 229
>PRK08727 hypothetical protein; Validated
Probab=95.31 E-value=0.077 Score=53.64 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=30.1
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
+-+.|+|++|+|||.|++.+++.+.++ +..++|+-..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH
Confidence 348999999999999999999887764 44567776544
No 230
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.22 E-value=0.076 Score=58.91 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=33.6
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
.-+.|+|++|+|||.|++.|++.+.+++++..++|+-.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45899999999999999999999988888888888754
No 231
>PRK08116 hypothetical protein; Validated
Probab=95.19 E-value=0.049 Score=56.51 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=27.5
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEE
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~l 167 (592)
+.|+|++|+|||.|++.|++.+.++ +..++|+-
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~ 149 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN 149 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 8899999999999999999988765 44556664
No 232
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.05 Score=60.99 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=22.8
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
-++++||||+||||++..+++.++..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc
Confidence 36899999999999999999987753
No 233
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.13 E-value=0.078 Score=48.18 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=40.0
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~ 212 (592)
+.++|+||+||||+++++++. .+ ..++.-++ +...+... --.+..........+-......++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~-----~~--~~~i~~D~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR-----LG--AVVISQDE----IRRRLAGE----DPPSPSDYIEAEERAYQILNAAIRKA 66 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH-----ST--EEEEEHHH----HHHHHCCS----SSGCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH-----CC--CEEEeHHH----HHHHHccc----ccccchhHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988753 22 22333332 22211110 00011123334444444555777777
Q ss_pred HHcCCcEEE
Q psy3765 213 VEMKKDVII 221 (592)
Q Consensus 213 r~~G~dVll 221 (592)
.+.|.+|+|
T Consensus 67 l~~g~~~vv 75 (143)
T PF13671_consen 67 LRNGNSVVV 75 (143)
T ss_dssp HHTT-EEEE
T ss_pred HHcCCCcee
Confidence 788988666
No 234
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.12 E-value=0.033 Score=55.56 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=40.9
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
+-+|+-..|.|+||+|||+++.+++.+...++ +..++|+...+.++++..
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCCCHHHHHH
Confidence 56899999999999999999999988877653 335678888887777666
No 235
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.13 Score=55.69 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=32.6
Q ss_pred CCceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeEC-ccccccccCCCCCeEE
Q psy3765 4 IGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS-PSQIRRFNLHTGDFVE 57 (592)
Q Consensus 4 ~~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~-~~~~r~~~L~vGd~l~ 57 (592)
++.+.++.=|+|++.|+.+.+++. +++. -||. .+.+.+-.|+.|+.+.
T Consensus 69 ~~~pl~vg~v~e~id~~~~iVks~-----~g~~-~vV~i~~~vd~~~L~pG~rVa 117 (406)
T COG1222 69 KEPPLIVGTVLEVLDDGRAIVKSS-----TGPK-FVVNILSFVDRDLLEPGMRVA 117 (406)
T ss_pred cCCCceEEEEEEEcCCceEEEEeC-----CCCe-EEEeccCCcCHHHcCCCCEEE
Confidence 445666778999999998888875 2222 2332 2367778899998775
No 236
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.05 E-value=0.013 Score=62.84 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=16.3
Q ss_pred cCCCCCcHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAH 505 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~ 505 (592)
++|+||||||||+|||=
T Consensus 35 lGPSGcGKSTlLr~IAG 51 (338)
T COG3839 35 LGPSGCGKSTLLRMIAG 51 (338)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 89999999999999995
No 237
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.038 Score=62.02 Aligned_cols=100 Identities=12% Similarity=0.193 Sum_probs=53.5
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccE-EEEEeCCCCCHHHHHHHHHhHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG-EVIASTFDEPAYRHVQVAEMVLEK 208 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~-~vV~~t~d~~~~~r~~~~~~a~t~ 208 (592)
++-.++.||+|+||||++..+++.++..++.- .-.||+-.. -.++...... ++-.+.++..-...++- -...
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~s-C~~i~~g~~~dviEIdaas~~gVd~IRe---L~e~ 112 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTS-CLEITKGISSDVLEIDAASNRGIENIRE---LRDN 112 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcH-HHHHHccCCccceeechhhcccHHHHHH---HHHH
Confidence 34469999999999999999999887643321 123443322 2233322211 22222222111222221 1222
Q ss_pred HHHHHHcCCcEEEeccchhHHHH-HHhhh
Q psy3765 209 AKRLVEMKKDVIILLDSITRLAR-AYNTV 236 (592)
Q Consensus 209 AE~~r~~G~dVlll~Dsltr~A~-A~rei 236 (592)
+.+....|+..++++|...++.. |++.+
T Consensus 113 l~~~p~~g~~KV~IIDEah~Ls~~A~NAL 141 (484)
T PRK14956 113 VKFAPMGGKYKVYIIDEVHMLTDQSFNAL 141 (484)
T ss_pred HHhhhhcCCCEEEEEechhhcCHHHHHHH
Confidence 22323457888999999988876 34443
No 238
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.03 E-value=0.035 Score=57.88 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=34.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
.+|+.++|+||.|+||||++..|+.....++.+..+.++.++.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4688999999999999999999998887653334556676765
No 239
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.01 E-value=0.14 Score=56.70 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=36.1
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHh
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~ 180 (592)
+-..++++|++|+||||++..||..+.+. +..+.++.++--.....+.++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~D~~R~aA~eQLk 148 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCADTFRAGAFDQLK 148 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCcccchhHHHHHH
Confidence 34578999999999999999999987754 445667777763334444443
No 240
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.016 Score=59.53 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=25.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+.|.+|++.+|+|++|||||||+..|+-
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 5689999999999999999999987764
No 241
>KOG1352|consensus
Probab=95.00 E-value=0.027 Score=61.12 Aligned_cols=71 Identities=27% Similarity=0.390 Sum_probs=57.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCceeEEEE-EEeCCchhhHHHHHhc-------CC--c-------EEEecCCCCcc----
Q psy3765 491 SPKSGKSIILQHIAHAITTNHSEAIMIVM-LIDERPEEVTEMQRSV-------RG--E-------VIASTFDEPAL---- 549 (592)
Q Consensus 491 ~p~~GKttll~~ia~~~~~~~~~~~~~v~-Li~ER~eEV~d~~~~~-------~~--~-------vv~st~D~~~~---- 549 (592)
.=|||||++-|.+.+ |.+.++||- =-||||-|..|-.+.. .| | +||-||..|..
T Consensus 253 AFGCGKTVISQsLSK-----YSNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREA 327 (618)
T KOG1352|consen 253 AFGCGKTVISQSLSK-----YSNSDAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREA 327 (618)
T ss_pred ccccchHHHHHHHhh-----ccCCCeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCchhhhhh
Confidence 358999999999999 888888766 6899999988877653 22 1 89999999862
Q ss_pred -----------------------chHHHHHHHhhccCCCCCCc
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGKV 569 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~~ 569 (592)
||-.|+|.|.+.+ |||.
T Consensus 328 SIYTGITlsEYfRDmG~nVsMmADStSRWAEALREI---SGRL 367 (618)
T KOG1352|consen 328 SIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREI---SGRL 367 (618)
T ss_pred hhhhcccHHHHHHhcCcceeeeecchhHHHHHHHHh---hhhh
Confidence 9999999999985 4554
No 242
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.00 E-value=0.19 Score=47.91 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=25.6
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+|.-+.|.|.+|+||||+++.|+..+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57889999999999999999999887653
No 243
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.99 E-value=0.17 Score=52.62 Aligned_cols=50 Identities=16% Similarity=0.370 Sum_probs=35.4
Q ss_pred ceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 119 RIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 119 raID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
.+++.+.| -|+..++||.|+||+|||||...+.+.+.++ +.++=+++|+-
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~--g~~VaVlAVDP 67 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER--GKRVAVLAVDP 67 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT--T--EEEEEE-G
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc--CCceEEEEECC
Confidence 34555555 4788999999999999999999999988875 44455677764
No 244
>PRK10867 signal recognition particle protein; Provisional
Probab=94.98 E-value=0.14 Score=56.85 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=52.9
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHh----hccEEEEEeCCCCCHHHHHHHHHhH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR----SVRGEVIASTFDEPAYRHVQVAEMV 205 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~----~~~~~vV~~t~d~~~~~r~~~~~~a 205 (592)
-..+.++|++|+||||++..+|..+.++ .+..+.++.++-......+-++ .....++.......|..- +..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i---~~~a 175 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDI---AKAA 175 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHH---HHHH
Confidence 4578999999999999999999887764 2445667788854444333332 223334433222222211 1112
Q ss_pred HHHHHHHHHcCCcEEEeccchhHH
Q psy3765 206 LEKAKRLVEMKKDVIILLDSITRL 229 (592)
Q Consensus 206 ~t~AE~~r~~G~dVlll~Dsltr~ 229 (592)
-++.+..++|++| +|.--|+
T Consensus 176 ---~~~a~~~~~DvVI-IDTaGrl 195 (433)
T PRK10867 176 ---LEEAKENGYDVVI-VDTAGRL 195 (433)
T ss_pred ---HHHHHhcCCCEEE-EeCCCCc
Confidence 2344556777655 4765544
No 245
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.97 E-value=0.017 Score=62.37 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=16.3
Q ss_pred cCCCCCcHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAH 505 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~ 505 (592)
+.||||||||||+|||=
T Consensus 37 LGPSGcGKTTlLR~IAG 53 (352)
T COG3842 37 LGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 79999999999999996
No 246
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.95 E-value=0.02 Score=55.94 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=29.4
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 120 aID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+++-.+.+.+|..++|+|+.|+|||||++.|+...
T Consensus 15 ~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 15 LLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEccCcEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44445688999999999999999999999887643
No 247
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.043 Score=63.65 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+-.++.||+|+|||+++..+|+.++..
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345899999999999999999988753
No 248
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.89 E-value=0.019 Score=55.59 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988753
No 249
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=0.04 Score=62.30 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.9
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+-.++.||+|+|||+++..+++.++.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34689999999999999999998875
No 250
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.86 E-value=0.31 Score=46.97 Aligned_cols=82 Identities=18% Similarity=0.125 Sum_probs=49.5
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLE 207 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t 207 (592)
.+|--+.|.|.+|+||||+++.|....... +..++++. +..+.. .+. ......+..+.........
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~--~~~~~~l~----~d~~r~---~l~-----~~~~~~~~~~~~~~~~~~~ 81 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESK--GYRVYVLD----GDNVRH---GLN-----KDLGFSEEDRKENIRRIGE 81 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEC----ChHHHh---hhc-----cccCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999877543 22233332 122222 110 1112234444444444456
Q ss_pred HHHHHHHcCCcEEEec
Q psy3765 208 KAKRLVEMKKDVIILL 223 (592)
Q Consensus 208 ~AE~~r~~G~dVlll~ 223 (592)
++..+..+|..|++-.
T Consensus 82 ~~~~~~~~G~~VI~d~ 97 (184)
T TIGR00455 82 VAKLFVRNGIIVITSF 97 (184)
T ss_pred HHHHHHcCCCEEEEec
Confidence 7777888897777544
No 251
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.79 E-value=0.047 Score=63.34 Aligned_cols=105 Identities=12% Similarity=0.188 Sum_probs=53.1
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhh-ccEEEEEeCCCCCHHHHHHHHHhHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS-VRGEVIASTFDEPAYRHVQVAEMVLEKAKR 211 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~-~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~ 211 (592)
.++.|++|+||||++..+++.++..+.. .--.||+- .--.++... .--.+.++.++..-...++- -+..+.|
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c~~~~---~~~pCg~C-~~C~~i~~g~~~D~ieidaas~~~VddiR~---li~~~~~ 113 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNCETGI---TATPCGEC-DNCREIEQGRFVDLIEIDAASRTKVEDTRE---LLDNVQY 113 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCC---CCCCCCCC-HHHHHHHcCCCCCceeecccccCCHHHHHH---HHHHHHh
Confidence 3889999999999999999988763210 00123332 111111110 00112222222112222221 1222233
Q ss_pred HHHcCCcEEEeccchhHHHH-HHhhhccCCCCCC
Q psy3765 212 LVEMKKDVIILLDSITRLAR-AYNTVIPASGKVL 244 (592)
Q Consensus 212 ~r~~G~dVlll~Dsltr~A~-A~reis~~~Ge~p 244 (592)
---.|+.-++|+|+..++.. |++.+=..+.|+|
T Consensus 114 ~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp 147 (647)
T PRK07994 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 (647)
T ss_pred hhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC
Confidence 22468888999999888875 5555533444444
No 252
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.79 E-value=0.052 Score=56.97 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=34.1
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
..+++..++|.|++|+|||||+..++....+. +..+.++.++
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~--~~~v~~i~~D 71 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRR--GLKVAVIAVD 71 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence 46679999999999999999999999887764 4455566666
No 253
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.021 Score=54.87 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988753
No 254
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.021 Score=56.71 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=26.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+||..+|+|++|+|||||++.|+...
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 578899999999999999999999988643
No 255
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.75 E-value=0.045 Score=65.30 Aligned_cols=104 Identities=11% Similarity=0.127 Sum_probs=52.8
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccc--hhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDER--PEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAK 210 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR--~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE 210 (592)
.+|+||+|+|||+++..+++.++..+. .. -..||.- ..++.+... .-++.+..++.--...++- -+....
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce~~-~~--~~pCg~C~sC~~i~~g~~--~DviEidAas~~kVDdIRe---Lie~v~ 112 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCEQG-VT--ATPCGVCSSCVEIAQGRF--VDLIEVDAASRTKVDDTRE---LLDNVQ 112 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCccC-CC--CCCCCCchHHHHHhcCCC--ceEEEeccccccCHHHHHH---HHHHHH
Confidence 489999999999999999998875311 00 0112221 112221111 0122223222111222221 112223
Q ss_pred HHHHcCCcEEEeccchhHHHH-HHhhhccCCCCCC
Q psy3765 211 RLVEMKKDVIILLDSITRLAR-AYNTVIPASGKVL 244 (592)
Q Consensus 211 ~~r~~G~dVlll~Dsltr~A~-A~reis~~~Ge~p 244 (592)
|.-..|+..++|+|...++.. |++.+=..+.|+|
T Consensus 113 ~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP 147 (944)
T PRK14949 113 YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP 147 (944)
T ss_pred hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC
Confidence 333468899999999999865 5555433344443
No 256
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.71 E-value=0.3 Score=49.63 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=91.1
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc------------cE-EEEEe----CCC
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV------------RG-EVIAS----TFD 192 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~------------~~-~vV~~----t~d 192 (592)
|+=++|.|+.|+|||.|.|+++-...++ +..+-|+.--. .+.+|++.+ ++ -.++. ..+
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~--g~~v~yvsTe~---T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~ 102 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMN--GYRVTYVSTEL---TVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVN 102 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhC--CceEEEEEech---hHHHHHHHHHhcCCCchHHHhcceeEEEEecccccc
Confidence 7899999999999999999999887765 33444565543 556666655 12 23333 333
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCCCCCCCcccccchHHHhhcccccCCcce
Q psy3765 193 EPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSL 272 (592)
Q Consensus 193 ~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~~Gyp~~l~~~~~~~~erA~~~~~~GSI 272 (592)
.....+-..-..-+ |..+-.-+|| +++||++-++.--.+. ..-.|+...+++-..|-+
T Consensus 103 ~~~~~~~~~L~~l~---~~~k~~~~dV-iIIDSls~~~~~~~~~------------------~vl~fm~~~r~l~d~gKv 160 (235)
T COG2874 103 WGRRSARKLLDLLL---EFIKRWEKDV-IIIDSLSAFATYDSED------------------AVLNFMTFLRKLSDLGKV 160 (235)
T ss_pred cChHHHHHHHHHHH---hhHHhhcCCE-EEEecccHHhhcccHH------------------HHHHHHHHHHHHHhCCCE
Confidence 33333332222222 3333334555 5669999887532221 234677777777656655
Q ss_pred eeEEEEEeecCCCCCcccccccccccCeEEEechH
Q psy3765 273 TIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307 (592)
Q Consensus 273 T~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~ 307 (592)
-++ | + .+ +-+++-+.--.+++.|+++.|.-.
T Consensus 161 Iil-T-v-hp-~~l~e~~~~rirs~~d~~l~L~~~ 191 (235)
T COG2874 161 IIL-T-V-HP-SALDEDVLTRIRSACDVYLRLRLE 191 (235)
T ss_pred EEE-E-e-Ch-hhcCHHHHHHHHHhhheeEEEEhh
Confidence 444 3 2 32 467777777888899999999865
No 257
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.69 E-value=0.19 Score=55.85 Aligned_cols=91 Identities=19% Similarity=0.148 Sum_probs=53.3
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEEEEEeCCCCCHHHHHHHHHhHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGEVIASTFDEPAYRHVQVAEMVL 206 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~vV~~t~d~~~~~r~~~~~~a~ 206 (592)
.-+.++|++|+||||++..+|..+.++ .+..+.++.++-+.....+-++.. ...++.......|..- +.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i---~~--- 172 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEI---AR--- 172 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHH---HH---
Confidence 468899999999999999999886532 244677888886655544433222 2233333333334221 11
Q ss_pred HHHHHHHHcCCcEEEeccchhHH
Q psy3765 207 EKAKRLVEMKKDVIILLDSITRL 229 (592)
Q Consensus 207 t~AE~~r~~G~dVlll~Dsltr~ 229 (592)
..-+++...++|++ ++|.--|+
T Consensus 173 ~al~~~~~~~~DvV-IIDTaGr~ 194 (428)
T TIGR00959 173 RALEYAKENGFDVV-IVDTAGRL 194 (428)
T ss_pred HHHHHHHhcCCCEE-EEeCCCcc
Confidence 22334456677754 45765543
No 258
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.69 E-value=0.11 Score=56.90 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=31.6
Q ss_pred eeeeceeeeeecCCeeEeeCCCCCCCCCCCCcccC-ccccccCCCCCCCeee
Q psy3765 416 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS-PSQIRRFNLHTGILWK 466 (592)
Q Consensus 416 ~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~-~~~i~~~~l~~gd~~~ 466 (592)
...+.=++|++.++.+.+++.. + ...+|. .+.|.+-.|++|+.|.
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~~~-----~-~~~~~~~~~~~~~~~~~~~~~v~ 111 (398)
T PTZ00454 66 PLVIGQFLEMIDSNYGIVSSTS-----G-SNYYVRILSTLNRELLKPNASVA 111 (398)
T ss_pred CceEEEEEEEEcCCEEEEEcCC-----C-CEEEEecccccCHhhCCCCCEEE
Confidence 4556678899999999888741 2 234443 5567777789999885
No 259
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.68 E-value=0.036 Score=52.29 Aligned_cols=36 Identities=22% Similarity=0.432 Sum_probs=22.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
|+.|.|++++|||||++.|++. ++.+| .|-++++.+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~------g~~~v----~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR------GYPVV----PEYAREIIE 36 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH------T-EEE------TTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc------CCeEE----eecHHHHHH
Confidence 7899999999999999999864 44332 666665544
No 260
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.66 E-value=0.024 Score=56.31 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=27.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|+|++|+|||||++.|+-..
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 568899999999999999999999888654
No 261
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.65 E-value=0.023 Score=55.37 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999999999988754
No 262
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.65 E-value=0.024 Score=56.01 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56779999999999999999999988764
No 263
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.65 E-value=0.048 Score=63.02 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=53.1
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCe-EEE-EEEeccchhHHHHHHhhc-cEEEEEeCCCCCHHHHHHHHHhHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEA-IMI-VMLIDERPEEVTEMQRSV-RGEVIASTFDEPAYRHVQVAEMVLEKA 209 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~-~~I-~~lIGeR~~Ev~e~~~~~-~~~vV~~t~d~~~~~r~~~~~~a~t~A 209 (592)
.++.|++|+|||+++..+++.++..+++- ..+ .-.||+- +.-..+...- --.+..+.++.--...+ +..+..+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C-~~C~~i~~g~h~D~~eldaas~~~Vd~i---Reli~~~ 116 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC-QACRDIDSGRFVDYTELDAASNRGVDEV---QQLLEQA 116 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc-HHHHHHHcCCCCceeecCcccccCHHHH---HHHHHHH
Confidence 48999999999999999999988543210 000 1123322 1111111100 01111222211111222 2222333
Q ss_pred HHHHHcCCcEEEeccchhHHHH-HHhhhccCCCCCC
Q psy3765 210 KRLVEMKKDVIILLDSITRLAR-AYNTVIPASGKVL 244 (592)
Q Consensus 210 E~~r~~G~dVlll~Dsltr~A~-A~reis~~~Ge~p 244 (592)
.|--..|+--++++|+..++.. +++.+-..+.|+|
T Consensus 117 ~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP 152 (618)
T PRK14951 117 VYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP 152 (618)
T ss_pred HhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC
Confidence 3333456667788899888766 5555444445544
No 264
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.64 E-value=0.024 Score=55.86 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999988754
No 265
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.62 E-value=0.024 Score=55.58 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999988754
No 266
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.61 E-value=0.17 Score=55.25 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=40.4
Q ss_pred ccccccceeeccc-cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 113 KENITGRIIDLIA-PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 113 ~l~TGiraID~l~-PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
.+...+.+++... .+.+|+-++++||+|+||||++..|+......+....+.++..+.
T Consensus 119 ~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 119 VLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred HHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 3555666666653 467899999999999999999999998765443322334444443
No 267
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.59 E-value=0.024 Score=55.92 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999988754
No 268
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.58 E-value=0.025 Score=55.45 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56779999999999999999999988753
No 269
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.58 E-value=0.024 Score=61.24 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=31.1
Q ss_pred ccceee-ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 117 TGRIID-LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 117 GiraID-~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+..++| .=+.|-+|.-..+.||+|||||||+.+||-.
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455665 5568899999999999999999999999853
No 270
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.57 E-value=0.025 Score=56.68 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988753
No 271
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.56 E-value=0.023 Score=51.49 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccc
Confidence 457789999999999999999998877543
No 272
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.56 E-value=0.054 Score=59.58 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=35.1
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEE
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~l 167 (592)
...-+.|+|+.|+|||.|++.+++.+.+++++..++|+-
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 366789999999999999999999999999999888863
No 273
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.55 E-value=0.027 Score=55.13 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+.++|+|++|+|||||++.|+..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999999988753
No 274
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.026 Score=55.33 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=26.4
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999999999988853
No 275
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.54 E-value=0.027 Score=51.06 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=23.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIA 151 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia 151 (592)
+.+..|+.++|+|++|+|||||+.++.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 356789999999999999999998765
No 276
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.53 E-value=0.026 Score=55.59 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988854
No 277
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.52 E-value=0.025 Score=55.33 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45778999999999999999999988754
No 278
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.026 Score=56.31 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|+|++|+|||||++.|+...
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999887643
No 279
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.51 E-value=0.26 Score=48.35 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=25.5
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+|.-+.|+|.+|+|||||++.|+..+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 67789999999999999999999877654
No 280
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.50 E-value=0.064 Score=60.43 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.6
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.|-.++.||+|+||||++..+|+.++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcC
Confidence 356889999999999999999998764
No 281
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.47 E-value=0.027 Score=54.84 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=27.8
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 121 ID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.|.=+.+-+|++.+|+|++|+|||||++.|+..
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 17 FDLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 343456789999999999999999999988764
No 282
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.47 E-value=0.12 Score=59.73 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=33.0
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
+.|+|++|+|||.|++.|++.+.+.+++..++|+-..+
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 88999999999999999999988777788888886543
No 283
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.45 E-value=0.028 Score=55.12 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999988754
No 284
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.44 E-value=0.027 Score=55.98 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988754
No 285
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.44 E-value=0.028 Score=56.18 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999988754
No 286
>CHL00181 cbbX CbbX; Provisional
Probab=94.44 E-value=0.16 Score=53.16 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.8
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+..+|-.+++.||||||||+++..+++.+..
T Consensus 55 ~~~~~~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 55 SSNPGLHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3445777999999999999999999987654
No 287
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.13 Score=58.53 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=35.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
-++.+|+.++|+|+.|+||||++..|+......+....+.++..+.
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 4567899999999999999999999998776654333445555543
No 288
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.42 E-value=0.026 Score=55.51 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999999988753
No 289
>PRK05642 DNA replication initiation factor; Validated
Probab=94.41 E-value=0.12 Score=52.31 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=27.8
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
-+.|+|++|+|||.|++.+++.+.++ +..++|+-..
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~ 82 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA 82 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH
Confidence 46799999999999999998877654 3456776543
No 290
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.41 E-value=0.028 Score=55.95 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=27.4
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.=+.+.+|+..+|+|++|+|||||++.|+...
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred eeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999999887543
No 291
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.41 E-value=0.029 Score=56.34 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+.++|+|++|+|||||++.|+-.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988753
No 292
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=94.41 E-value=0.055 Score=60.71 Aligned_cols=220 Identities=9% Similarity=-0.057 Sum_probs=168.0
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCC-CCCCCCCCCCcccccchHHHhhcccccC
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS-GKVLTGGVDSNALQRPKRFFGAARNIEE 268 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~-Ge~p~~Gyp~~l~~~~~~~~erA~~~~~ 268 (592)
....+....+++-++.+.++.+++|.++|+=+.++.|.+++.+++|...-. ||+-.-+++...-..+++++++-. |+
T Consensus 290 liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fY--ER 367 (588)
T COG1155 290 LIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFY--ER 367 (588)
T ss_pred EeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHH--Hh
Confidence 345566678999999999999999999999999999999999999985422 222234777776666777776533 57
Q ss_pred Cccee--------eEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCC--HHHHH-
Q psy3765 269 GGSLT--------IIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQ--DDKLQ- 337 (592)
Q Consensus 269 ~GSIT--------~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~--~~~~~- 337 (592)
.|.+. ...| ++.+.|+...++.+.+-..|=..|.+.-.|..+.++|-..|..+++-.-+++.+ .++++
T Consensus 368 aG~v~~~~~~~r~Gsvt-V~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~ 446 (588)
T COG1155 368 AGRVRLVSPEERFGSIT-VIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDE 446 (588)
T ss_pred cCeeeecCCCcceEEEE-EecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHHHhhc
Confidence 77654 4444 457778999999999999999999999999999999999999999887777776 33333
Q ss_pred ----HHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhcccccccccchhhhhHHHH-HHHHHhhc
Q psy3765 338 ----KIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTIDLEVNSVKRLRKQELM-FAIFKKKT 411 (592)
Q Consensus 338 ----~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi-~~Ilk~~~ 411 (592)
.-.++|..+.+.-+.++-++...+.-+.+...+... ...+++.+.++..++ +..+++...++... +.+++...
T Consensus 447 ~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ire~fLqQ-nafd~vD~~~~~~kq~~mm~~i~ 525 (588)
T COG1155 447 NVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIREDFLQQ-NAFDEIDAYCSLRKQYLMLKAIM 525 (588)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHhh-cccCcccccCCHHHHHHHHHHHH
Confidence 344567777777777777777777777777677776 778888888888888 77777777777765 55555444
Q ss_pred cc
Q psy3765 412 KI 413 (592)
Q Consensus 412 ~~ 413 (592)
..
T Consensus 526 ~~ 527 (588)
T COG1155 526 EI 527 (588)
T ss_pred HH
Confidence 43
No 293
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.029 Score=56.61 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=26.4
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|++|+|||||++.|+-..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 567799999999999999999999887643
No 294
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.37 E-value=0.029 Score=55.49 Aligned_cols=29 Identities=34% Similarity=0.312 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999988754
No 295
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.37 E-value=0.1 Score=57.18 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=24.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
..+-.++.||+|+|||+++..+++.++..
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46779999999999999999999887653
No 296
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.36 E-value=0.086 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.6
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+-.++.|++|+|||+++..+++.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 67899999999999999999998864
No 297
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.36 E-value=0.027 Score=56.19 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999999988754
No 298
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.36 E-value=0.058 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
=.+|.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 37899999999998888887776
No 299
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.36 E-value=0.03 Score=55.12 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.|.+|+..+|+|++|+|||||++.|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999988764
No 300
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.35 E-value=0.03 Score=56.18 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988754
No 301
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.33 E-value=0.031 Score=55.06 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=30.3
Q ss_pred cccceeecc-ccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 116 ITGRIIDLI-APIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 116 TGiraID~l-~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++-+++|-. +.+-+|.+++|.||+|||||||++++|.-+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 344444432 3466899999999999999999999986543
No 302
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.031 Score=55.88 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999988753
No 303
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.29 E-value=0.096 Score=54.04 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=45.6
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEK 208 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~ 208 (592)
.-..++++|++|||||+|++.+.+.... .+..+|-+-- +...+ --.+
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~--~GLRlIev~k----~~L~~---------------------------l~~l 97 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYAD--QGLRLIEVSK----EDLGD---------------------------LPEL 97 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhh--cCceEEEECH----HHhcc---------------------------HHHH
Confidence 4567899999999999999998876654 3566654321 11111 1123
Q ss_pred HHHHHHcCCcEEEeccchh
Q psy3765 209 AKRLVEMKKDVIILLDSIT 227 (592)
Q Consensus 209 AE~~r~~G~dVlll~Dslt 227 (592)
.+.+++..+.-+|++|||+
T Consensus 98 ~~~l~~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 98 LDLLRDRPYKFILFCDDLS 116 (249)
T ss_pred HHHHhcCCCCEEEEecCCC
Confidence 4556678899999999986
No 304
>PRK06620 hypothetical protein; Validated
Probab=94.28 E-value=0.12 Score=51.75 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=17.8
Q ss_pred EecCCCCCcHHHHHHHHHHH
Q psy3765 487 VNVASPKSGKSIILQHIAHA 506 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~ 506 (592)
+-++|||+|||+|++.+++.
T Consensus 48 ~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 48 LIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred EEECCCCCCHHHHHHHHHhc
Confidence 45899999999999998884
No 305
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.28 E-value=0.031 Score=55.89 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.|.+|+..+|+|++|+|||||++.|+..
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988754
No 306
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.28 E-value=0.031 Score=54.48 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=24.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIA 151 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia 151 (592)
+.+.+|++++|+||+|+|||||++.|.
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999998774
No 307
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.032 Score=55.19 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=26.9
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3466789999999999999999999988753
No 308
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.28 E-value=0.032 Score=55.86 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999988753
No 309
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.27 E-value=0.071 Score=58.50 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=49.7
Q ss_pred ccccccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 113 KENITGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 113 ~l~TGiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
.+.||+..+|-++- +-+|+=+.|-|+||+|||+++.+++.++..++ +..+.|...-+.++++.+
T Consensus 177 gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~-g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 177 GVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKE-GKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred cccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC-CCeEEEEeCcCCHHHHHH
Confidence 47899999999874 66899999999999999999999998876533 223556666666655543
No 310
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.27 E-value=0.032 Score=54.82 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999988754
No 311
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.27 E-value=0.07 Score=48.70 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=29.5
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
++|+|++|+|||+|+..+++.+.. .++.+-+.. ..+..+++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~-~~~~~dl~g~~ 45 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSS-DTTEEDLIGSY 45 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TT-TSTHHHHHCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEecc-ccccccceeee
Confidence 689999999999999999998732 344444433 33344555444
No 312
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.26 E-value=0.031 Score=55.33 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.|-+|+..+|+|++|+|||||++.|+..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999988753
No 313
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.033 Score=55.50 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=26.7
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
=+.+.+|+..+|+|++|+|||||++.|+-..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3467799999999999999999999887543
No 314
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.085 Score=61.23 Aligned_cols=110 Identities=12% Similarity=0.159 Sum_probs=54.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCC--eEEEEEEeccchhHHHHHHh-hccEEEEEeCCCCCHHHHHHHHHhHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSE--AIMIVMLIDERPEEVTEMQR-SVRGEVIASTFDEPAYRHVQVAEMVLE 207 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~--~~~I~~lIGeR~~Ev~e~~~-~~~~~vV~~t~d~~~~~r~~~~~~a~t 207 (592)
+-.++.|++|+|||+++..|++.++..+++ -....-.||+-. .-..+.. .+.-++..+.++..-...++- -+.
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~-sC~~I~aG~hpDviEIdAas~~gVDdIRe---Lie 114 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR-ACTEIDAGRFVDYIEMDAASNRGVDEMAQ---LLD 114 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH-HHHHHHcCCCCcceEecccccCCHHHHHH---HHH
Confidence 346899999999999999999998753221 000111233321 1111111 011122222222222222221 122
Q ss_pred HHHHHHHcCCcEEEeccchhHHH-HHHhhhccCCCCCC
Q psy3765 208 KAKRLVEMKKDVIILLDSITRLA-RAYNTVIPASGKVL 244 (592)
Q Consensus 208 ~AE~~r~~G~dVlll~Dsltr~A-~A~reis~~~Ge~p 244 (592)
...|--..|+.-++|+|...++. .+.|.+-..+.|+|
T Consensus 115 ~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 115 KAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred HHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 22222346777788889888875 35555443455544
No 315
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.032 Score=56.10 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999999988753
No 316
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.23 E-value=0.14 Score=57.80 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=23.9
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcC
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNH 158 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~ 158 (592)
+-.++.||+|+||||++..+++.++..+
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 4459999999999999999999887543
No 317
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.22 E-value=0.072 Score=57.43 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.6
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
-.++.||+|+|||+++..+++.++
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhc
Confidence 358999999999999999999876
No 318
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.22 E-value=0.043 Score=56.33 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=0.0
Q ss_pred eeEEe-----------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEE-EEeCCchhhHHHHHhc
Q psy3765 484 IKKVN-----------VASPKSGKSIILQHIAHAITTNHSEAIMIVM-LIDERPEEVTEMQRSV 535 (592)
Q Consensus 484 v~~in-----------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~-Li~ER~eEV~d~~~~~ 535 (592)
+..|| +.++|+||||||++|+..+....-++.+--. ...-.+.|+++|++.+
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
No 319
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.22 E-value=0.032 Score=53.79 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|+|++|+|||||++.|+...
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567799999999999999999999888643
No 320
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.21 E-value=0.034 Score=57.11 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=28.2
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 120 aID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+++-+.-+.+|+..+|+|++|+|||||++.|+...
T Consensus 16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33334448899999999999999999999887643
No 321
>PF13479 AAA_24: AAA domain
Probab=94.20 E-value=0.098 Score=52.11 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=46.3
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEK 208 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~ 208 (592)
++.|++|.|+||+|||+++..+ +. .+|+-+......+. .......+-|. +.. .+.- ++
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~--------~k--~l~id~E~g~~~~~-~~~~~~~i~i~-----s~~-~~~~---~~-- 59 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL--------PK--PLFIDTENGSDSLK-FLDDGDVIPIT-----SWE-DFLE---AL-- 59 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC--------CC--eEEEEeCCCccchh-hhcCCCeeCcC-----CHH-HHHH---HH--
Confidence 4679999999999999998654 33 45555533212222 22122221111 111 1111 11
Q ss_pred HHHHH--HcCCcEEEeccchhHHHHHHhhhcc
Q psy3765 209 AKRLV--EMKKDVIILLDSITRLARAYNTVIP 238 (592)
Q Consensus 209 AE~~r--~~G~dVlll~Dsltr~A~A~reis~ 238 (592)
+.+. ..++++||| ||++.+.+...+-..
T Consensus 60 -~~l~~~~~~y~tiVI-Dsis~~~~~~~~~~~ 89 (213)
T PF13479_consen 60 -DELEEDEADYDTIVI-DSISWLEDMCLEYIC 89 (213)
T ss_pred -HHHHhccCCCCEEEE-ECHHHHHHHHHHHHh
Confidence 1122 468888765 999998666555443
No 322
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.19 E-value=0.033 Score=56.28 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|+|++|+|||||++.|+-..
T Consensus 25 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 568899999999999999999999887643
No 323
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.18 E-value=0.034 Score=54.76 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|.|++|+|||||++.|+...
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 557789999999999999999999887643
No 324
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.17 E-value=0.091 Score=59.45 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.6
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
.+-.++.||+|+||||++..+++.++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3568999999999999999999988754
No 325
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.17 E-value=0.032 Score=57.85 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=28.9
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.=+.+-+|.-.+|+||.|||||||++.|+..+.
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346788999999999999999999999987655
No 326
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.16 E-value=0.034 Score=56.51 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=28.0
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
|.=+.+.+|+.++|+|++|+|||||++.|+...
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999999888643
No 327
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.16 E-value=0.035 Score=53.12 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999988754
No 328
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.034 Score=56.18 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999988753
No 329
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.14 E-value=0.036 Score=54.49 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999988753
No 330
>PF05729 NACHT: NACHT domain
Probab=94.13 E-value=0.059 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.3
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcCCCce
Q psy3765 488 NVASPKSGKSIILQHIAHAITTNHSEA 514 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~~~~~ 514 (592)
..++||+||||+|++++..+..+++..
T Consensus 5 I~G~~G~GKStll~~~~~~~~~~~~~~ 31 (166)
T PF05729_consen 5 ISGEPGSGKSTLLRKLAQQLAEEEPPP 31 (166)
T ss_pred EECCCCCChHHHHHHHHHHHHhcCccc
Confidence 368999999999999999999998765
No 331
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.13 E-value=0.036 Score=56.63 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+.++|+|++|+|||||++.|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988854
No 332
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.12 E-value=0.11 Score=55.11 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=29.6
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
.++-+.|+|++|+|||.|+..|++.+.++ +..+.|+-+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~ 192 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHF 192 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEH
Confidence 45568899999999999999999998865 444555543
No 333
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.11 E-value=0.3 Score=48.53 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=30.5
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
.+.-+.|+|++|+|||+|++.|++...+. +..++|+-+.+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~~~ 80 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDAAS 80 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEehHH
Confidence 45678999999999999999999877654 33456665544
No 334
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.10 E-value=0.14 Score=52.69 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=27.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEE
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVM 166 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~ 166 (592)
+-+.+.|++|+|||.|+..|++.+.+. +..++|+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEE
Confidence 458899999999999999999988765 3445555
No 335
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.10 E-value=0.037 Score=56.34 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|+|++|+|||||++.|+-..
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 557799999999999999999999988643
No 336
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.10 E-value=0.036 Score=55.96 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.6
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+-+|+..+|+|++|+|||||++.|+-.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44466789999999999999999999988753
No 337
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.10 E-value=0.038 Score=53.00 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=27.2
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.=+.+-+|+..+|.|++|+|||||++.|+...
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33557799999999999999999999988643
No 338
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.10 E-value=0.037 Score=52.66 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56779999999999999999999988754
No 339
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.09 E-value=0.061 Score=58.53 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=33.4
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
+.-+.|.|++|+|||.|++.|++.+.+++++..++|+-.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 446789999999999999999999988777877888743
No 340
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.037 Score=54.32 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.6
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 66678889999999999999999999988754
No 341
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.07 E-value=0.063 Score=54.01 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=21.7
Q ss_pred eeeecCCCCChhHHHHHHHHHHHh
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
++|.|++|+||||+++.|+..+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999999988764
No 342
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.038 Score=55.73 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=27.3
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33456789999999999999999999988753
No 343
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.06 E-value=0.037 Score=54.76 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|++++|+|++|+|||||++.|+..
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 55779999999999999999999988753
No 344
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.04 E-value=0.039 Score=54.20 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999988864
No 345
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.03 E-value=0.032 Score=62.53 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCcEEEecCCCCcc-------------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL------------------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~vv~st~D~~~~------------------- 549 (592)
++|+|+|||||++.|++ .-+..-=-++|| |.+++++ ....-.-|+--+-+|.+
T Consensus 367 vG~SGsGKSTLl~lL~g-----~~~p~~G~I~i~--g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e 438 (529)
T TIGR02868 367 LGPSGSGKSTLLMLLTG-----LLDPLQGEVTLD--GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDE 438 (529)
T ss_pred ECCCCCCHHHHHHHHhc-----CCCCCCcEEEEC--CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHH
Q ss_pred ------------chHHHHHHHhhccCCCCCCcccCC
Q psy3765 550 ------------SVMCKLARAYNTVIPASGKVLTGG 573 (592)
Q Consensus 550 ------------DSiTR~arA~n~~~~~~g~~lsgg 573 (592)
|-+.++-.-|+......|..||||
T Consensus 439 ~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 439 ELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred HHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
No 346
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.03 E-value=0.038 Score=54.51 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999988754
No 347
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.02 E-value=0.038 Score=54.02 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=27.5
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
=+.+-+|+..+|+|++|+|||||+..|+....
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 35688999999999999999999998876543
No 348
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.02 E-value=0.039 Score=54.86 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 56779999999999999999999988864
No 349
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.00 E-value=0.039 Score=54.43 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56779999999999999999999988754
No 350
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.00 E-value=0.041 Score=52.53 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|++.+|+|++|+|||||++.|+...
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567799999999999999999999887643
No 351
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.98 E-value=0.038 Score=55.26 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=27.2
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
=+.+-+|+..+|+|++|+|||||++.|+-..
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3567899999999999999999999888643
No 352
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.04 Score=55.09 Aligned_cols=29 Identities=34% Similarity=0.465 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999988864
No 353
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.98 E-value=0.04 Score=55.27 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=26.6
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+.+|+.++|+|++|+|||||++.|+..
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 366789999999999999999999988754
No 354
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.97 E-value=0.039 Score=55.15 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=26.9
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
=+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3567799999999999999999999888543
No 355
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.95 E-value=0.041 Score=53.95 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=26.3
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|++.+|+|++|+|||||++.|+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356779999999999999999999988754
No 356
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.95 E-value=0.33 Score=50.76 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=23.5
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
|-.++|+|+||||||+++..+++.+.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 446899999999999999989888765
No 357
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.94 E-value=0.04 Score=54.67 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.|.+|+..+|+|+.|+|||||++.|+-..
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 557799999999999999999999887543
No 358
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.94 E-value=0.041 Score=54.87 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56779999999999999999999988754
No 359
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.94 E-value=0.041 Score=55.47 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+-.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56779999999999999999999988753
No 360
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.93 E-value=0.04 Score=55.21 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|+|++|+|||||++.|+...
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999887543
No 361
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.93 E-value=0.1 Score=58.06 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=28.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
-+.|+|++|+|||+|++.|++.+.+. +..++|+-.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~ 177 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS 177 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH
Confidence 37999999999999999999988764 455667643
No 362
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.92 E-value=0.041 Score=55.68 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=26.5
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.|-+|+..+|+|++|+|||||++.|+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999988753
No 363
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.92 E-value=0.042 Score=55.15 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.4
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999999999988854
No 364
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.92 E-value=0.072 Score=51.78 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=24.5
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCe
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEA 161 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~ 161 (592)
++|.|++|+|||||+++|+..+...+.++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~ 30 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGP 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 68999999999999999999887654443
No 365
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.91 E-value=0.11 Score=61.16 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.8
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
...++++||||||||+|+..+++.+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999998754
No 366
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.90 E-value=0.04 Score=55.03 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467799999999999999999999988643
No 367
>PF13245 AAA_19: Part of AAA domain
Probab=93.90 E-value=0.06 Score=45.54 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCcEE-EecCC
Q psy3765 490 ASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI-ASTFD 545 (592)
Q Consensus 490 a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~vv-~st~D 545 (592)
+|||+|||+++-.++..+.++...-.--|+++--..+=+.++.+.....+. ++|++
T Consensus 17 g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl~~~~~~~~T~h 73 (76)
T PF13245_consen 17 GPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERLGLGVPFAMTIH 73 (76)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHHcCCCcchhhHH
No 368
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.90 E-value=0.045 Score=52.35 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|+|++|+|||||++.|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 557799999999999999999999888643
No 369
>PRK10908 cell division protein FtsE; Provisional
Probab=93.89 E-value=0.042 Score=54.47 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999988753
No 370
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.89 E-value=0.039 Score=56.48 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+.++|+|++|+|||||++.|+..
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56789999999999999999999988753
No 371
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.88 E-value=0.042 Score=54.31 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.|-+|+..+|+|++|+|||||++.|+-..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467799999999999999999999887543
No 372
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.88 E-value=0.042 Score=55.57 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999988864
No 373
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.87 E-value=0.12 Score=61.84 Aligned_cols=84 Identities=15% Similarity=0.277 Sum_probs=48.3
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcC-----CCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCC-CHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNH-----SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDE-PAYRHVQVA 202 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~-----~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~-~~~~r~~~~ 202 (592)
+....+++|+||+|||+|+..++..+.+.. .+..++++-+|. +++.+... -...+....
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~---------------l~ag~~~~g~~e~~lk~~ 262 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA---------------LVAGAKYRGEFEERLKGV 262 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh---------------hhhccchhhhhHHHHHHH
Confidence 345788999999999999999998876421 133444443332 11111100 011122211
Q ss_pred HhHHHHHHHHHHcCCcEEEeccchhHHHHHH
Q psy3765 203 EMVLEKAKRLVEMKKDVIILLDSITRLARAY 233 (592)
Q Consensus 203 ~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~ 233 (592)
=+.++..+..++|++|++.++..+.
T Consensus 263 ------~~~~~~~~~~~ILfIDEih~l~~~~ 287 (857)
T PRK10865 263 ------LNDLAKQEGNVILFIDELHTMVGAG 287 (857)
T ss_pred ------HHHHHHcCCCeEEEEecHHHhccCC
Confidence 1122234678999999999998664
No 374
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.85 E-value=0.044 Score=53.68 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999988754
No 375
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.85 E-value=0.041 Score=56.58 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=28.9
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
|.=+.+-+|.++||+|.+|+|||||++.|+..+.
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 3446788999999999999999999998886543
No 376
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.84 E-value=0.044 Score=53.75 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=26.6
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+.+|+.++|+|++|+|||||++.|+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999988764
No 377
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.82 E-value=0.045 Score=54.27 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=26.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988764
No 378
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.81 E-value=0.044 Score=55.75 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 567799999999999999999999888643
No 379
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.81 E-value=0.043 Score=57.40 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=26.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|+.|+|||||+++|+..+
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999888643
No 380
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.81 E-value=0.42 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.0
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+.+.|.||+||||+++.+++.....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999887654
No 381
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.80 E-value=0.079 Score=52.11 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=24.5
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.++..++|.|++|+|||||++.|++.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999998866
No 382
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.79 E-value=0.044 Score=54.76 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=28.1
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55677889999999999999999999988753
No 383
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.79 E-value=0.046 Score=52.66 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457799999999999999999999887643
No 384
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.79 E-value=0.046 Score=54.35 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+.+.+|+..+|+|++|+|||||++.|+....
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5688999999999999999999998886543
No 385
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.79 E-value=0.036 Score=57.03 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=16.3
Q ss_pred cCCCCCcHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAH 505 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~ 505 (592)
++||||||||||+.||-
T Consensus 35 lGpSGcGKSTLLriiAG 51 (248)
T COG1116 35 LGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 89999999999999996
No 386
>PTZ00301 uridine kinase; Provisional
Probab=93.79 E-value=0.077 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.3
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+||-|++|+|||||++.|.+.++..
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhh
Confidence 6899999999999999998887654
No 387
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.79 E-value=0.044 Score=56.36 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=27.0
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+.+|+.++|+|++|+|||||++.|+..
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3357889999999999999999999988754
No 388
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.78 E-value=0.13 Score=61.79 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=24.7
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+-...+++|+||||||+|+..+++.+...
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 34578899999999999999999987643
No 389
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.75 E-value=0.045 Score=56.20 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=27.5
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+.+|+.++|+|++|+|||||++.|+..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34467889999999999999999999988754
No 390
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.74 E-value=0.044 Score=58.90 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=26.6
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
.=+.|..|.-+.|+||+||||||||.+||-
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445688999999999999999999999884
No 391
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.73 E-value=0.047 Score=55.08 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56779999999999999999999988853
No 392
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.72 E-value=0.21 Score=58.93 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=30.3
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
.+|+-++++||.|+||||++..|+......+....+.++.++
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 368899999999999999999999876433332233344444
No 393
>PHA00729 NTP-binding motif containing protein
Probab=93.72 E-value=0.058 Score=54.97 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=29.2
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
-+.+..|...+. .+++|+|+||+|||+|+..|++.+.
T Consensus 6 k~~~~~l~~~~f-~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 6 KKIVSAYNNNGF-VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHhcCCe-EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555555555 5899999999999999999998765
No 394
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.72 E-value=0.047 Score=53.53 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=27.3
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33456789999999999999999999988764
No 395
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.71 E-value=0.047 Score=55.31 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.|-+|+..+|+|++|+|||||++.|+...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999999887644
No 396
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.70 E-value=0.046 Score=58.88 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=27.0
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+-+|+..+|+||+|+|||||++.|+-.
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 4466789999999999999999999988754
No 397
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.70 E-value=0.047 Score=56.02 Aligned_cols=30 Identities=30% Similarity=0.255 Sum_probs=26.6
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999999988754
No 398
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.70 E-value=0.55 Score=51.54 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=32.9
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhc--CCCeEEEEEEecc
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTN--HSEAIMIVMLIDE 170 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~--~~~~~~I~~lIGe 170 (592)
.+++.++++|+.|+||||.+..+|.....+ +.+..+.++.++.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 457889999999999999999999877643 2344555666664
No 399
>PRK14531 adenylate kinase; Provisional
Probab=93.70 E-value=0.05 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.6
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+|+.|+|+||+||||+++.|++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
No 400
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.69 E-value=0.048 Score=55.06 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 26 LDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 55779999999999999999999988753
No 401
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.69 E-value=0.056 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.9
Q ss_pred eeeecCCCCChhHHHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
++|.|.+|+|||||++.|.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999864
No 402
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.66 E-value=0.047 Score=58.79 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=27.8
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.=+.+.+|+.++|+|++|+|||||+++|+-..
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678899999999999999999999988643
No 403
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.048 Score=55.82 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56779999999999999999999988764
No 404
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.054 Score=58.20 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=29.9
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 120 aID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.+|.=+.+-+|+..+|+|++|+|||||++.|+-.
T Consensus 14 ~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 14 CLTVNLTLPAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3477778899999999999999999999988754
No 405
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.65 E-value=0.048 Score=55.15 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=26.4
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567799999999999999999999888643
No 406
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.64 E-value=0.049 Score=55.11 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=26.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.|-+|+..+|+|++|+|||||++.|+...
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457799999999999999999999887643
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.2 Score=55.55 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=30.5
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
.++..++++||+|+||||++..|+...... .+..+.++.++.
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt 262 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDN 262 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccc
Confidence 356679999999999999999999755322 233455666665
No 408
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.63 E-value=0.05 Score=54.58 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999988854
No 409
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.62 E-value=0.051 Score=55.77 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=26.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999999999988764
No 410
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.61 E-value=0.35 Score=53.45 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=34.8
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec-cchhHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID-ERPEEVTEMQ 179 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG-eR~~Ev~e~~ 179 (592)
.++.+++|+|+.|+||||++..||..+... +..+.++.++ .|...+..+.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk 289 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQ 289 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHH
Confidence 346899999999999999999999887654 3344455554 3434444443
No 411
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.61 E-value=0.05 Score=55.79 Aligned_cols=33 Identities=33% Similarity=0.294 Sum_probs=27.7
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
|.=+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333567799999999999999999999887643
No 412
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.051 Score=54.19 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=26.4
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 346779999999999999999999988754
No 413
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.60 E-value=0.05 Score=53.93 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=25.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+-.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999988753
No 414
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.59 E-value=0.047 Score=55.86 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56779999999999999999999988754
No 415
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.59 E-value=0.051 Score=54.92 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=26.0
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+.+.+|+.++|+|++|+|||||++.|+-
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 23 SMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 35678999999999999999999999874
No 416
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.59 E-value=0.05 Score=55.55 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999988864
No 417
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.59 E-value=0.046 Score=53.74 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 467799999999999999999999888653
No 418
>KOG0744|consensus
Probab=93.58 E-value=0.22 Score=53.49 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=56.1
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcC--CCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNH--SEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKA 209 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~--~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~A 209 (592)
=+++-||||||||+|++.+|+-+.-+- ...+++.+-|-- .+ =|-+- +.++- -.++.+=-.|.
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins-hs---LFSKW---------FsESg---KlV~kmF~kI~ 242 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS-HS---LFSKW---------FSESG---KLVAKMFQKIQ 242 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh-hH---HHHHH---------Hhhhh---hHHHHHHHHHH
Confidence 468899999999999998887654321 122233222210 00 01111 11111 12334444566
Q ss_pred HHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCCC
Q psy3765 210 KRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246 (592)
Q Consensus 210 E~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~~ 246 (592)
|-.-+.|-=|.|++|.+-.+|.|-... .++-.|+.
T Consensus 243 ELv~d~~~lVfvLIDEVESLa~aR~s~--~S~~EpsD 277 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESLAAARTSA--SSRNEPSD 277 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHHHHHHHhh--hcCCCCch
Confidence 666678999999999999999884333 34555554
No 419
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=0.066 Score=55.05 Aligned_cols=41 Identities=32% Similarity=0.560 Sum_probs=28.4
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeE-EEEEEeccchh
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAI-MIVMLIDERPE 173 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~-~I~~lIGeR~~ 173 (592)
.+|+|||++|||||+..||+.+.-...++- .=++-|+||.+
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE 181 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE 181 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch
Confidence 689999999999999999998775322211 11344666544
No 420
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.58 E-value=0.051 Score=54.81 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+-.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 22 LDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 55779999999999999999999988754
No 421
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.57 E-value=0.04 Score=57.38 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=32.0
Q ss_pred eEEecCCCCCcHHHHHHHHHHHHhcCCCceeE---EEEEEeCCc
Q psy3765 485 KKVNVASPKSGKSIILQHIAHAITTNHSEAIM---IVMLIDERP 525 (592)
Q Consensus 485 ~~in~a~p~~GKttll~~ia~~~~~~~~~~~~---~v~Li~ER~ 525 (592)
..+.++|||+||||||++|+..+..+..++.+ -|..+|+|.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ 156 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERS 156 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHH
Confidence 44559999999999999999988877666554 455677774
No 422
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.55 E-value=0.05 Score=56.45 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=26.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|+|++|+|||||++.|+...
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999999887643
No 423
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.053 Score=54.71 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+-.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45779999999999999999999988764
No 424
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.52 E-value=0.053 Score=55.29 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=25.3
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.+-+|+.++|+|++|+|||||++.|+..+
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999999887643
No 425
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.049 Score=55.95 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56779999999999999999999988754
No 426
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.051 Score=58.63 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=27.3
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+.+|+..+|+||+|+|||||++.|+-.
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 4467889999999999999999999988753
No 427
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.054 Score=54.65 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.5
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.|.+|+..+|+|++|+|||||++.|+..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 23 NLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356779999999999999999999988753
No 428
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.52 E-value=0.053 Score=53.01 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|.|++|+|||||++.|+...
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999887643
No 429
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.054 Score=55.50 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 31 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 31 LDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56779999999999999999999988853
No 430
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.51 E-value=0.057 Score=53.23 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=24.0
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+|..++|.|++|+|||||++.|+..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999999987654
No 431
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.50 E-value=0.051 Score=56.55 Aligned_cols=32 Identities=34% Similarity=0.473 Sum_probs=27.8
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.|.+|+.++|+|++|+|||||++.|+-.
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 44567889999999999999999999988754
No 432
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.49 E-value=0.29 Score=44.46 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=27.9
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhH
Q psy3765 487 VNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 529 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~ 529 (592)
+.+++||+|||||+..|+......+ -.++.+-.++...++.
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~e~~~~~~~ 43 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKG--GKVVYVDIEEEIEELT 43 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcC--CEEEEEECCcchHHHH
Confidence 4478999999999999999876632 2333444455555443
No 433
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.49 E-value=0.052 Score=55.93 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999999988754
No 434
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.48 E-value=0.054 Score=54.47 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999999988753
No 435
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.48 E-value=0.053 Score=56.81 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988754
No 436
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.48 E-value=0.055 Score=55.26 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988754
No 437
>PRK14530 adenylate kinase; Provisional
Probab=93.47 E-value=0.055 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.3
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
|-++.|+|+||+||||+++.|++..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 438
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.47 E-value=0.11 Score=53.14 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEecCCCCCcHHHHHHHHHHHHhc
Q psy3765 486 KVNVASPKSGKSIILQHIAHAITT 509 (592)
Q Consensus 486 ~in~a~p~~GKttll~~ia~~~~~ 509 (592)
.+-++|||+||||+.+.||+.+.+
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345899999999999999987643
No 439
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.47 E-value=0.054 Score=54.48 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|+.|+|||||++.|+...
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467799999999999999999999888643
No 440
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.46 E-value=0.056 Score=54.67 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 26 ~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 26 LDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56889999999999999999999988764
No 441
>PRK06217 hypothetical protein; Validated
Probab=93.46 E-value=0.044 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+|+.|+|.+|+|||||+++|++..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998654
No 442
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.46 E-value=0.057 Score=51.55 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 557799999999999999999999887643
No 443
>PRK09165 replicative DNA helicase; Provisional
Probab=93.46 E-value=0.11 Score=58.51 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=39.5
Q ss_pred ccccccceeeccc-cccccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 113 KENITGRIIDLIA-PIGKGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 113 ~l~TGiraID~l~-PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
.+.||+.-+|-++ -+-+|+=+.|-|.||+|||+++.+|+.++..+
T Consensus 199 gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~ 244 (497)
T PRK09165 199 GISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKA 244 (497)
T ss_pred cccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 4789999999987 46689999999999999999999999887654
No 444
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.42 E-value=0.057 Score=55.59 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=26.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.|-+|+..+|+|++|+|||||++.|+...
T Consensus 45 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999999888644
No 445
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.42 E-value=0.057 Score=54.51 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=26.5
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+..|+.++|+|++|+|||||++.|+..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 22 NMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356779999999999999999999988864
No 446
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.42 E-value=0.062 Score=48.70 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=43.0
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCcEEEecCCCCccchHH---HHHHHhhc
Q psy3765 488 NVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPALSVMC---KLARAYNT 561 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~vv~st~D~~~~DSiT---R~arA~n~ 561 (592)
.+.|||+||||||+++.+ . . +.+. +++++++.+...+..++...+.--.++|. +++.+|-.
T Consensus 20 I~GpSGsGKSTLl~~l~~-----G---~--i~~~---g~di~~~~~~~~~~~~~~~~q~lf~~ti~~Ni~~~~~~~~ 83 (107)
T cd00820 20 ITGDSGIGKTELALELIK-----R---K--HRLV---GDDNVEIREDSKDELIGRNPELGLEIRLRLNIFLITKKTV 83 (107)
T ss_pred EEcCCCCCHHHHHHHhhC-----C---e--EEEe---eEeHHHhhhhhcCCEEEEechhcchhhHHhhceeeeEEEE
Confidence 389999999999999871 1 2 3333 57888898888888777776663336666 66555543
No 447
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.41 E-value=0.055 Score=58.28 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=27.1
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+..|+..+|+||+|+|||||++.|+-.
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4466779999999999999999999988853
No 448
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.41 E-value=0.055 Score=55.36 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=26.9
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 30 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 30 VSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3356789999999999999999999988764
No 449
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.41 E-value=0.056 Score=56.18 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=27.0
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
=+.+.+|+..+|+|++|+|||||++.|+..+
T Consensus 27 sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 27 SFELEEGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999999887543
No 450
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.40 E-value=0.06 Score=52.49 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=25.6
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+.+-+|+..+|+|+.|+|||||++.|+.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34577999999999999999999998775
No 451
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.40 E-value=0.056 Score=57.50 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=29.7
Q ss_pred ceeecc-ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 119 RIIDLI-APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 119 raID~l-~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+++|-+ +.|.+|+..+|+|++|+|||||++.|+...
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 344444 478899999999999999999999888643
No 452
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.058 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.7
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|+.|+|+||+||||+++.|++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999986
No 453
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.40 E-value=0.058 Score=54.42 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.|.+|+..+|+|++|+|||||++.|+-.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999999988764
No 454
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.39 E-value=0.056 Score=54.66 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999988754
No 455
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.38 E-value=0.06 Score=53.71 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=25.0
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.+-+|+.++|+|++|+|||||++.|+..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999988754
No 456
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.37 E-value=0.052 Score=54.76 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=25.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+.+-+|+..+|+|++|+|||||++.|+.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 5577999999999999999999998875
No 457
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.36 E-value=0.056 Score=55.10 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45679999999999999999999988753
No 458
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.36 E-value=0.058 Score=55.46 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|+..+|+|++|+|||||++.|+...
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999999887643
No 459
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.35 E-value=0.058 Score=55.00 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=26.4
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.|-+|+..+|+|++|+|||||++.|+-..
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 557799999999999999999999887543
No 460
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.34 E-value=0.058 Score=54.80 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=26.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988754
No 461
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.31 E-value=0.06 Score=54.50 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=25.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+.+.+|+..+|+|++|+|||||++.|+.
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999998875
No 462
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.31 E-value=0.31 Score=46.01 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.0
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
++++.|++|+|||+++..++..+.+++. .+.++.++
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~--~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGK--RVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCC--EEEEEEeC
Confidence 4789999999999999999998877644 44455554
No 463
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.30 E-value=0.062 Score=54.29 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=26.8
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
=+.|-+|+.++|+|++|+|||||++.|+...
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3567799999999999999999999888643
No 464
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.30 E-value=0.058 Score=56.84 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=27.7
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.=+.|.+|+.++|+|++|+|||||++.|+-..
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44678899999999999999999999887543
No 465
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.29 E-value=0.062 Score=52.65 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45678999999999999999999988754
No 466
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.27 E-value=0.059 Score=52.89 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=24.4
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+| ..+|+|++|+|||||++.|+..
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 456678 9999999999999999988754
No 467
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.26 E-value=0.062 Score=54.72 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=26.4
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.|-+|+..+|+|++|+|||||++.|+..
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 32 SMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999999988753
No 468
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.26 E-value=0.061 Score=54.40 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.|-+|+..+|+|++|+|||||++.|+..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 25 MDFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45779999999999999999999988754
No 469
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.26 E-value=0.06 Score=55.34 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=26.8
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+.+|+.++|+|++|+|||||++.|+-.
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 31 VSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3356789999999999999999999988753
No 470
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.24 E-value=0.063 Score=54.29 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=25.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45779999999999999999999988753
No 471
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.24 E-value=0.064 Score=53.99 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
..|..|+-+.+.||+|||||||++.+|-.+.
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 4578999999999999999999997775543
No 472
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.23 E-value=0.067 Score=50.11 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=28.1
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
|.-+.+.+|+..+|+|++|+|||||++.|+..+
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999999887654
No 473
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.22 E-value=0.14 Score=59.96 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+-.++.|++|+|||+++..+++.++..
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 457999999999999999999987753
No 474
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.21 E-value=0.35 Score=53.56 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=32.9
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
+..|..+.++||+|+||||++..|+......+.+..+.++.++.
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 44578999999999999999999988776112344566666665
No 475
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.20 E-value=0.063 Score=53.46 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=27.1
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
=+.+-+|+..+|+|++|+|||||++.|+...
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3467899999999999999999999888654
No 476
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.19 E-value=0.13 Score=42.14 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.1
Q ss_pred eeeecCCCCChhHHHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
++|.|++|+||||+++.+++..
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999876
No 477
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.19 E-value=0.06 Score=53.92 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.|-+|+..+|+|++|+|||||++.|+..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 56779999999999999999999988753
No 478
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.19 E-value=0.065 Score=55.32 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=26.7
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+.+|+..+|+|++|+|||||++.|+..
T Consensus 39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3356789999999999999999999988743
No 479
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.19 E-value=0.062 Score=55.64 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.|.+|+..+|+|++|+|||||++.|+..
T Consensus 22 l~i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 22 LRIEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999988754
No 480
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.12 Score=58.65 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.6
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+-.++.||+|+|||+++..+++.++.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34589999999999999999998864
No 481
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.18 E-value=0.069 Score=50.98 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.7
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
|+.+.|.|++|+|||||++.|+..+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999987653
No 482
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.18 E-value=0.19 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.4
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+|.=+.+.|+||+||||+++.+++..
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 36678899999999999999998754
No 483
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.065 Score=55.44 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.8
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.|.+|+..+|+|++|+|||||++.|+-.
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 44467889999999999999999999998754
No 484
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.17 E-value=0.064 Score=54.53 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+.+|+.++|+|++|+|||||++.|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56779999999999999999999988764
No 485
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.16 E-value=0.094 Score=54.62 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=0.0
Q ss_pred cccceeeeeEEe-----------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchh--hHHHHHhc
Q psy3765 477 RYFALLKIKKVN-----------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE--VTEMQRSV 535 (592)
Q Consensus 477 ~~~~l~~v~~in-----------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eE--V~d~~~~~ 535 (592)
+|..-..|+.+| ++||||||||+|+||-+-|.-. .--|.+=||.=.+ .-+.+|++
T Consensus 10 ~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept----~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT----SGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC----CceEEECCeecccCCHHHHHHhh
No 486
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.16 E-value=0.065 Score=54.61 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=26.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+.++|+|++|+|||||++.|+...
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 28 MDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567799999999999999999999998653
No 487
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.14 E-value=0.068 Score=54.37 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=24.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIA 151 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia 151 (592)
+.+-+|+.+.|+||+|+|||||+..|.
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999999997664
No 488
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.14 E-value=0.065 Score=55.70 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=26.8
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.|-+|+..+|+|++|+|||||++.|+-.
T Consensus 58 vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3356789999999999999999999988754
No 489
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.13 E-value=0.12 Score=50.38 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=33.0
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhcc
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR 183 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~ 183 (592)
+.+|+-+.|+|++|+|||.|+..|++.+..+ +..+.|+- +.++++.++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~-------~~~L~~~l~ 91 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT-------ASDLLDELK 91 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE-------HHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee-------cCceecccc
Confidence 4578899999999999999999999877763 45566663 344555553
No 490
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.12 E-value=0.079 Score=46.50 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=19.8
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|+.|+|++|+|||+|++.++..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999888753
No 491
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.11 E-value=0.067 Score=55.00 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=26.9
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+.+|+..+|+|++|+|||||++.|+-.
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3356789999999999999999999988754
No 492
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.10 E-value=0.066 Score=55.24 Aligned_cols=33 Identities=27% Similarity=0.212 Sum_probs=27.9
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
|.=+.|.+|++.+|+|++|+|||||++.|+-.+
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344568899999999999999999999887643
No 493
>PRK05748 replicative DNA helicase; Provisional
Probab=93.10 E-value=0.14 Score=56.62 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=47.2
Q ss_pred ccccccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHH
Q psy3765 113 KENITGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 176 (592)
Q Consensus 113 ~l~TGiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~ 176 (592)
.+.||+..+|-++- +-+|+=+.|-|.||+|||+++.+|+.++..++.. .++|...-+..+++.
T Consensus 185 gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~-~v~~fSlEms~~~l~ 248 (448)
T PRK05748 185 GIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDK-NVAIFSLEMGAESLV 248 (448)
T ss_pred CccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHH
Confidence 58999999999874 5589999999999999999999999876543222 344555555444443
No 494
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.09 E-value=0.11 Score=60.13 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=26.7
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
...+...|+.++|.||+|+||||++..+++.+.
T Consensus 103 ~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 103 QVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred cccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344556677899999999999999999987544
No 495
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.05 E-value=0.068 Score=55.52 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=26.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.|-+|+..+|+|++|+|||||++.|+...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999999988644
No 496
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.05 E-value=0.07 Score=54.76 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=27.7
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
|.=+.+-+|+..+|+|++|+|||||++.|+..+
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 334567799999999999999999999887643
No 497
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.04 E-value=0.07 Score=52.60 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=28.1
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45577889999999999999999999988754
No 498
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.04 E-value=0.072 Score=54.65 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.|-+|+..+|+|++|+|||||++.|+-..
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 40 LDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567799999999999999999999888644
No 499
>KOG1969|consensus
Probab=93.03 E-value=0.14 Score=59.55 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=30.2
Q ss_pred cee-eeecCCCCChhHHHHHHHHHHHhcCCCeEEE-EEEeccchhHH
Q psy3765 131 QRG-LLVASPKSGKSIILQHIAHAITTNHSEAIMI-VMLIDERPEEV 175 (592)
Q Consensus 131 QR~-~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I-~~lIGeR~~Ev 175 (592)
||+ ++.||||.|||||++-||+ |.++.+| +=+-++|.-++
T Consensus 326 kKilLL~GppGlGKTTLAHViAk-----qaGYsVvEINASDeRt~~~ 367 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAK-----QAGYSVVEINASDERTAPM 367 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHH-----hcCceEEEecccccccHHH
Confidence 444 6789999999999998887 5677666 34777776544
No 500
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.02 E-value=0.07 Score=51.99 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=25.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+.+-+|+..+|+|++|+|||||++.|+-
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677999999999999999999998874
Done!