Query psy3765
Match_columns 592
No_of_seqs 442 out of 2941
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 16:42:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0o_A Transcription terminati 100.0 2E-106 7E-111 856.0 28.5 372 1-375 49-420 (427)
2 3ice_A Transcription terminati 100.0 4E-104 1E-108 839.9 27.0 374 2-375 46-419 (422)
3 3vr4_D V-type sodium ATPase su 100.0 1.3E-81 4.3E-86 679.5 24.7 336 36-388 73-426 (465)
4 2c61_A A-type ATP synthase non 100.0 1.9E-81 6.5E-86 681.0 24.3 334 38-388 76-427 (469)
5 2ck3_D ATP synthase subunit be 100.0 1.4E-81 5E-86 682.2 23.4 331 38-387 77-423 (482)
6 3gqb_B V-type ATP synthase bet 100.0 3.6E-81 1.2E-85 675.8 23.8 335 36-388 69-428 (464)
7 1fx0_B ATP synthase beta chain 100.0 8E-82 2.7E-86 686.5 18.5 331 38-387 89-436 (498)
8 2r9v_A ATP synthase subunit al 100.0 2.6E-80 9E-85 675.5 26.5 340 38-404 99-450 (515)
9 2qe7_A ATP synthase subunit al 100.0 6.4E-80 2.2E-84 672.0 27.8 341 37-404 85-437 (502)
10 2ck3_A ATP synthase subunit al 100.0 2.6E-80 9E-85 676.1 24.7 344 37-404 85-445 (510)
11 3oaa_A ATP synthase subunit al 100.0 4.8E-80 1.6E-84 671.8 26.4 359 15-402 65-446 (513)
12 1fx0_A ATP synthase alpha chai 100.0 1.2E-79 4.2E-84 670.4 21.8 339 37-402 86-436 (507)
13 3vr4_A V-type sodium ATPase ca 100.0 1.5E-79 5.2E-84 675.3 18.0 301 102-412 208-537 (600)
14 3gqb_A V-type ATP synthase alp 100.0 1.1E-79 3.6E-84 674.2 16.5 301 102-412 197-524 (578)
15 3mfy_A V-type ATP synthase alp 100.0 2.7E-80 9.4E-85 679.0 11.1 303 100-412 201-532 (588)
16 1sky_E F1-ATPase, F1-ATP synth 100.0 1.2E-73 4E-78 621.0 24.3 349 38-405 74-438 (473)
17 3l0o_A Transcription terminati 100.0 4.3E-58 1.5E-62 486.9 14.1 225 366-592 7-311 (427)
18 2obl_A ESCN; ATPase, hydrolase 100.0 1E-55 3.6E-60 465.1 19.5 333 47-405 2-343 (347)
19 3ice_A Transcription terminati 100.0 2.7E-56 9.3E-61 473.8 13.7 223 368-592 5-310 (422)
20 2dpy_A FLII, flagellum-specifi 100.0 1.1E-47 3.7E-52 415.5 22.2 343 37-405 73-432 (438)
21 1a62_A RHO; transcription term 100.0 4.9E-29 1.7E-33 228.9 9.9 124 369-494 3-126 (130)
22 1a62_A RHO; transcription term 99.8 5.3E-22 1.8E-26 182.2 7.1 86 3-88 44-129 (130)
23 2ck3_D ATP synthase subunit be 99.8 1.4E-20 4.8E-25 204.8 2.8 100 489-589 159-300 (482)
24 1fx0_B ATP synthase beta chain 99.8 1E-20 3.5E-25 206.5 1.2 102 489-591 171-315 (498)
25 2c61_A A-type ATP synthase non 99.8 1.1E-20 3.8E-25 205.4 1.1 103 489-591 158-298 (469)
26 2ck3_A ATP synthase subunit al 99.8 2.3E-20 7.8E-25 204.3 0.1 103 489-591 168-311 (510)
27 2r9v_A ATP synthase subunit al 99.8 2.4E-20 8.2E-25 204.0 -0.3 100 489-591 181-316 (515)
28 3vr4_D V-type sodium ATPase su 99.8 5E-20 1.7E-24 199.5 -0.3 103 489-591 157-297 (465)
29 3gqb_B V-type ATP synthase bet 99.8 9.3E-20 3.2E-24 197.4 1.3 103 489-591 153-300 (464)
30 2qe7_A ATP synthase subunit al 99.7 1.5E-19 5.2E-24 197.5 2.1 100 489-591 168-303 (502)
31 1fx0_A ATP synthase alpha chai 99.7 3.7E-19 1.3E-23 194.7 4.3 100 489-591 169-304 (507)
32 3oaa_A ATP synthase subunit al 99.7 5.5E-18 1.9E-22 185.0 -0.1 99 489-590 168-302 (513)
33 3gqb_A V-type ATP synthase alp 99.6 2.4E-16 8.2E-21 173.7 1.5 98 489-591 227-367 (578)
34 3mfy_A V-type ATP synthase alp 99.5 5.8E-16 2E-20 170.7 -0.3 98 489-591 233-373 (588)
35 3vr4_A V-type sodium ATPase ca 99.5 1.4E-15 4.6E-20 168.3 1.5 98 489-591 238-378 (600)
36 1sky_E F1-ATPase, F1-ATP synth 99.5 3.7E-15 1.3E-19 162.4 0.6 83 489-572 157-274 (473)
37 2obl_A ESCN; ATPase, hydrolase 99.3 6.4E-13 2.2E-17 139.7 0.7 97 489-590 77-208 (347)
38 2dpy_A FLII, flagellum-specifi 98.6 1.2E-08 4E-13 110.5 4.1 99 488-590 162-295 (438)
39 2zts_A Putative uncharacterize 98.2 6.8E-06 2.3E-10 79.2 10.3 67 114-181 12-80 (251)
40 3io5_A Recombination and repai 97.8 4.1E-05 1.4E-09 80.0 8.4 107 113-230 6-124 (333)
41 2cvh_A DNA repair and recombin 97.7 6.6E-05 2.3E-09 71.1 8.3 105 114-230 2-118 (220)
42 1n0w_A DNA repair protein RAD5 97.6 0.00017 5.9E-09 69.2 9.6 112 113-230 5-132 (243)
43 2z43_A DNA repair and recombin 97.5 0.00044 1.5E-08 71.1 10.9 114 113-232 88-218 (324)
44 1v5w_A DMC1, meiotic recombina 97.4 0.00051 1.7E-08 71.4 10.8 114 113-232 103-234 (343)
45 2zr9_A Protein RECA, recombina 97.4 0.00026 8.8E-09 74.2 8.4 105 113-230 41-152 (349)
46 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00021 7.1E-09 67.7 6.4 66 113-180 4-71 (235)
47 3hr8_A Protein RECA; alpha and 97.4 0.0003 1E-08 74.2 8.1 105 113-230 41-152 (356)
48 2i1q_A DNA repair and recombin 97.4 0.00055 1.9E-08 69.9 9.7 114 113-232 79-219 (322)
49 1u94_A RECA protein, recombina 97.3 0.00037 1.3E-08 73.3 8.1 105 113-230 43-154 (356)
50 2ehv_A Hypothetical protein PH 97.3 0.00037 1.3E-08 67.1 7.1 66 113-180 11-79 (251)
51 4a74_A DNA repair and recombin 97.2 0.00057 1.9E-08 64.9 7.8 43 113-155 6-50 (231)
52 1xp8_A RECA protein, recombina 97.2 0.00054 1.8E-08 72.4 8.2 105 113-230 54-165 (366)
53 3bh0_A DNAB-like replicative h 97.2 0.0016 5.5E-08 66.8 10.8 63 113-177 50-113 (315)
54 2dr3_A UPF0273 protein PH0284; 97.1 0.00055 1.9E-08 65.7 6.3 66 113-180 4-71 (247)
55 1pzn_A RAD51, DNA repair and r 97.0 0.0018 6.2E-08 67.6 9.4 114 113-232 112-246 (349)
56 3lda_A DNA repair protein RAD5 97.0 0.0022 7.5E-08 68.5 9.8 69 113-181 159-235 (400)
57 2qby_A CDC6 homolog 1, cell di 96.9 0.00085 2.9E-08 68.2 5.3 97 128-232 43-143 (386)
58 2v1u_A Cell division control p 96.8 0.00059 2E-08 69.6 3.6 97 128-232 42-145 (387)
59 2z4s_A Chromosomal replication 96.7 0.0016 5.5E-08 70.0 6.5 41 130-170 130-170 (440)
60 2r6a_A DNAB helicase, replicat 96.7 0.0067 2.3E-07 65.2 10.8 63 113-176 185-248 (454)
61 1jbk_A CLPB protein; beta barr 96.7 0.0026 9E-08 57.4 6.4 29 128-156 41-69 (195)
62 3bos_A Putative DNA replicatio 96.6 0.00067 2.3E-08 64.3 2.5 48 121-170 43-90 (242)
63 1l8q_A Chromosomal replication 96.5 0.0025 8.4E-08 64.7 5.9 39 129-169 36-74 (324)
64 1fnn_A CDC6P, cell division co 96.5 0.004 1.4E-07 63.6 7.3 92 129-229 41-137 (389)
65 2p65_A Hypothetical protein PF 96.5 0.0034 1.2E-07 56.8 6.0 29 128-156 41-69 (187)
66 3bs4_A Uncharacterized protein 96.4 0.014 4.7E-07 59.0 10.6 67 114-182 3-71 (260)
67 2q6t_A DNAB replication FORK h 96.4 0.0094 3.2E-07 63.9 9.9 63 113-176 182-245 (444)
68 4a1f_A DNAB helicase, replicat 96.4 0.0096 3.3E-07 62.3 9.7 63 113-177 28-91 (338)
69 3t15_A Ribulose bisphosphate c 96.4 0.0026 8.8E-08 64.4 5.0 75 133-231 39-113 (293)
70 1w5s_A Origin recognition comp 96.4 0.0033 1.1E-07 64.9 5.8 93 129-230 49-151 (412)
71 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0018 6E-08 67.8 3.5 41 113-153 105-146 (331)
72 1cr0_A DNA primase/helicase; R 96.3 0.0041 1.4E-07 62.3 6.0 45 113-157 16-62 (296)
73 3pvs_A Replication-associated 96.3 0.0011 3.8E-08 71.7 1.5 73 129-233 49-122 (447)
74 4b4t_I 26S protease regulatory 96.2 0.017 5.7E-07 62.6 10.6 45 7-57 103-148 (437)
75 1nlf_A Regulatory protein REPA 96.2 0.0056 1.9E-07 61.0 6.2 44 113-156 12-56 (279)
76 2chg_A Replication factor C sm 96.2 0.0057 2E-07 56.5 5.7 29 129-157 37-65 (226)
77 2kjq_A DNAA-related protein; s 96.1 0.015 5E-07 53.2 8.2 37 129-167 35-71 (149)
78 3cmw_A Protein RECA, recombina 96.1 0.0081 2.8E-07 74.5 8.3 107 113-232 14-127 (1706)
79 3cmw_A Protein RECA, recombina 96.1 0.0073 2.5E-07 74.9 7.8 105 113-230 363-474 (1706)
80 3cmu_A Protein RECA, recombina 96.1 0.0058 2E-07 76.8 6.9 107 113-230 1407-1518(2050)
81 3ec2_A DNA replication protein 96.0 0.0039 1.3E-07 57.6 3.9 29 127-155 35-63 (180)
82 1zp6_A Hypothetical protein AT 96.0 0.0029 9.9E-08 58.7 2.9 29 124-152 3-31 (191)
83 3cmu_A Protein RECA, recombina 96.0 0.0082 2.8E-07 75.5 7.6 105 113-230 363-474 (2050)
84 3te6_A Regulatory protein SIR3 95.9 0.006 2E-07 63.4 5.1 92 127-230 42-145 (318)
85 2qby_B CDC6 homolog 3, cell di 95.9 0.012 4.1E-07 60.2 7.1 43 128-170 43-91 (384)
86 3uie_A Adenylyl-sulfate kinase 95.7 0.065 2.2E-06 50.4 10.9 84 128-225 23-106 (200)
87 3h4m_A Proteasome-activating n 95.6 0.022 7.5E-07 56.2 7.6 26 129-154 50-75 (285)
88 1zu4_A FTSY; GTPase, signal re 95.6 0.07 2.4E-06 55.1 11.4 45 126-172 101-145 (320)
89 1njg_A DNA polymerase III subu 95.5 0.017 5.8E-07 53.7 6.0 26 132-157 47-72 (250)
90 3cf0_A Transitional endoplasmi 95.5 0.023 8E-07 57.3 7.4 26 129-154 48-73 (301)
91 3bgw_A DNAB-like replicative h 95.5 0.011 3.8E-07 63.8 5.2 62 113-176 179-241 (444)
92 3c8u_A Fructokinase; YP_612366 95.5 0.012 4.2E-07 55.9 5.0 30 127-156 19-48 (208)
93 3dm5_A SRP54, signal recogniti 95.5 0.059 2E-06 58.4 10.8 89 128-225 98-190 (443)
94 4eun_A Thermoresistant glucoki 95.4 0.0086 2.9E-07 56.6 3.6 41 114-154 13-53 (200)
95 1znw_A Guanylate kinase, GMP k 95.3 0.0086 2.9E-07 57.0 3.1 29 126-154 16-44 (207)
96 3uk6_A RUVB-like 2; hexameric 95.3 0.015 5E-07 59.5 5.1 27 130-156 70-96 (368)
97 3tr0_A Guanylate kinase, GMP k 95.3 0.0094 3.2E-07 55.7 3.3 27 127-153 4-30 (205)
98 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.026 8.8E-07 57.9 6.8 25 130-154 45-69 (322)
99 2yhs_A FTSY, cell division pro 95.2 0.066 2.2E-06 58.9 10.3 33 125-157 288-320 (503)
100 2yvu_A Probable adenylyl-sulfa 95.2 0.083 2.8E-06 48.8 9.5 31 127-157 10-40 (186)
101 1vma_A Cell division protein F 95.1 0.11 3.7E-06 53.4 11.1 43 127-171 101-143 (306)
102 1z6t_A APAF-1, apoptotic prote 95.1 0.024 8.1E-07 62.0 6.3 43 128-171 145-190 (591)
103 1z6g_A Guanylate kinase; struc 95.0 0.011 3.8E-07 57.1 3.2 29 125-153 18-46 (218)
104 3pfi_A Holliday junction ATP-d 95.0 0.025 8.5E-07 57.3 5.9 24 131-154 56-79 (338)
105 1sxj_B Activator 1 37 kDa subu 95.0 0.018 6E-07 57.2 4.6 28 129-156 41-68 (323)
106 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.031 1E-06 54.1 6.2 25 131-155 40-64 (262)
107 1in4_A RUVB, holliday junction 94.9 0.022 7.6E-07 58.4 5.2 25 131-155 52-76 (334)
108 2qp9_X Vacuolar protein sortin 94.9 0.037 1.3E-06 57.5 6.8 25 131-155 85-109 (355)
109 3vaa_A Shikimate kinase, SK; s 94.8 0.016 5.4E-07 54.7 3.6 30 126-155 21-50 (199)
110 2j41_A Guanylate kinase; GMP, 94.8 0.015 5.2E-07 54.2 3.3 28 126-153 2-29 (207)
111 1d2n_A N-ethylmaleimide-sensit 94.8 0.093 3.2E-06 51.6 9.1 26 129-154 63-88 (272)
112 1j8m_F SRP54, signal recogniti 94.7 0.12 3.9E-06 52.9 10.0 46 128-175 96-141 (297)
113 2a5y_B CED-4; apoptosis; HET: 94.7 0.035 1.2E-06 60.8 6.6 42 130-172 152-196 (549)
114 3b9p_A CG5977-PA, isoform A; A 94.7 0.044 1.5E-06 54.4 6.7 25 130-154 54-78 (297)
115 3e70_C DPA, signal recognition 94.7 0.18 6.2E-06 52.3 11.4 91 126-225 125-219 (328)
116 3eie_A Vacuolar protein sortin 94.6 0.048 1.6E-06 55.5 6.8 25 131-155 52-76 (322)
117 1lv7_A FTSH; alpha/beta domain 94.6 0.056 1.9E-06 52.7 7.0 23 133-155 48-70 (257)
118 3tif_A Uncharacterized ABC tra 94.6 0.014 4.9E-07 57.4 2.7 29 124-152 25-53 (235)
119 4b4t_K 26S protease regulatory 94.6 0.067 2.3E-06 57.7 8.1 23 133-155 209-231 (428)
120 1htw_A HI0065; nucleotide-bind 94.6 0.017 5.8E-07 53.7 3.0 30 125-154 28-57 (158)
121 4b4t_M 26S protease regulatory 94.6 0.06 2.1E-06 58.2 7.7 24 132-155 217-240 (434)
122 4b4t_J 26S protease regulatory 94.5 0.044 1.5E-06 58.8 6.4 23 133-155 185-207 (405)
123 1kgd_A CASK, peripheral plasma 94.5 0.019 6.6E-07 53.4 3.3 25 129-153 4-28 (180)
124 1lvg_A Guanylate kinase, GMP k 94.5 0.018 6.1E-07 54.7 3.0 26 129-154 3-28 (198)
125 4b4t_L 26S protease subunit RP 94.5 0.064 2.2E-06 58.0 7.6 24 132-155 217-240 (437)
126 1q57_A DNA primase/helicase; d 94.5 0.022 7.6E-07 61.7 4.1 64 113-177 223-288 (503)
127 2eyu_A Twitching motility prot 94.4 0.023 8E-07 56.9 3.9 37 120-157 16-52 (261)
128 2v9p_A Replication protein E1; 94.4 0.018 6.3E-07 59.3 3.2 33 122-154 118-150 (305)
129 4b4t_I 26S protease regulatory 94.4 0.12 4.2E-06 55.8 9.7 45 416-466 103-148 (437)
130 2kjq_A DNAA-related protein; s 94.4 0.031 1.1E-06 51.0 4.4 23 488-510 41-63 (149)
131 2cbz_A Multidrug resistance-as 94.4 0.017 5.8E-07 56.9 2.7 30 124-153 25-54 (237)
132 1tf7_A KAIC; homohexamer, hexa 94.4 0.044 1.5E-06 59.9 6.3 52 114-167 21-75 (525)
133 3d8b_A Fidgetin-like protein 1 94.4 0.056 1.9E-06 56.0 6.7 34 130-168 117-150 (357)
134 2pcj_A ABC transporter, lipopr 94.3 0.016 5.5E-07 56.6 2.4 29 124-152 24-52 (224)
135 2qm8_A GTPase/ATPase; G protei 94.3 0.035 1.2E-06 57.5 5.1 43 119-161 43-86 (337)
136 3asz_A Uridine kinase; cytidin 94.3 0.023 8E-07 53.5 3.4 29 127-155 3-31 (211)
137 2ff7_A Alpha-hemolysin translo 94.3 0.018 6E-07 57.2 2.6 30 124-153 29-58 (247)
138 2wwf_A Thymidilate kinase, put 94.3 0.044 1.5E-06 51.3 5.2 35 127-161 7-41 (212)
139 2w58_A DNAI, primosome compone 94.2 0.044 1.5E-06 51.2 5.1 36 131-168 55-90 (202)
140 4g1u_C Hemin import ATP-bindin 94.2 0.018 6.3E-07 57.8 2.6 34 120-153 26-60 (266)
141 2zu0_C Probable ATP-dependent 94.2 0.023 7.7E-07 57.1 3.2 29 124-152 40-68 (267)
142 1b0u_A Histidine permease; ABC 94.2 0.019 6.6E-07 57.4 2.7 31 123-153 25-55 (262)
143 2d2e_A SUFC protein; ABC-ATPas 94.2 0.022 7.7E-07 56.4 3.1 29 124-152 23-51 (250)
144 1kht_A Adenylate kinase; phosp 94.2 0.044 1.5E-06 50.1 4.9 28 129-156 2-29 (192)
145 3gfo_A Cobalt import ATP-bindi 94.2 0.019 6.4E-07 58.2 2.6 29 124-152 28-56 (275)
146 2i3b_A HCR-ntpase, human cance 94.2 0.028 9.5E-07 53.7 3.6 26 130-155 1-26 (189)
147 2jeo_A Uridine-cytidine kinase 94.2 0.027 9.2E-07 55.0 3.6 30 125-154 20-49 (245)
148 1g6h_A High-affinity branched- 94.2 0.02 6.9E-07 57.0 2.7 30 124-153 27-56 (257)
149 2qt1_A Nicotinamide riboside k 94.2 0.024 8.3E-07 53.4 3.2 29 124-152 15-43 (207)
150 1mv5_A LMRA, multidrug resista 94.1 0.02 6.9E-07 56.5 2.6 29 125-153 23-51 (243)
151 1tf7_A KAIC; homohexamer, hexa 94.1 0.063 2.2E-06 58.7 6.8 62 113-176 262-325 (525)
152 3kl4_A SRP54, signal recogniti 94.1 0.14 4.6E-06 55.4 9.2 42 128-171 95-136 (433)
153 1sgw_A Putative ABC transporte 94.1 0.02 6.9E-07 55.8 2.5 29 125-153 30-58 (214)
154 1ji0_A ABC transporter; ATP bi 94.1 0.021 7.1E-07 56.3 2.6 28 125-152 27-54 (240)
155 2pze_A Cystic fibrosis transme 94.1 0.021 7.1E-07 55.9 2.6 30 124-153 28-57 (229)
156 4gp7_A Metallophosphoesterase; 94.1 0.026 9E-07 52.2 3.1 25 125-149 4-28 (171)
157 2olj_A Amino acid ABC transpor 94.0 0.021 7.3E-07 57.3 2.7 31 123-153 43-73 (263)
158 1vpl_A ABC transporter, ATP-bi 94.0 0.022 7.4E-07 57.0 2.7 30 124-153 35-64 (256)
159 1kag_A SKI, shikimate kinase I 94.0 0.027 9.4E-07 51.1 3.1 26 129-154 3-28 (173)
160 2ihy_A ABC transporter, ATP-bi 94.0 0.021 7.2E-07 57.8 2.6 30 123-152 40-69 (279)
161 1y63_A LMAJ004144AAA protein; 94.0 0.032 1.1E-06 52.0 3.6 28 126-153 6-33 (184)
162 3lnc_A Guanylate kinase, GMP k 94.0 0.018 6.3E-07 55.4 2.0 28 126-153 23-51 (231)
163 3b9q_A Chloroplast SRP recepto 94.0 0.048 1.7E-06 55.8 5.3 42 126-169 96-137 (302)
164 3fvq_A Fe(3+) IONS import ATP- 94.0 0.024 8.2E-07 59.8 3.0 34 120-153 19-53 (359)
165 1nn5_A Similar to deoxythymidy 94.0 0.051 1.7E-06 50.9 5.0 35 127-161 6-40 (215)
166 2ixe_A Antigen peptide transpo 94.0 0.023 7.7E-07 57.3 2.7 30 124-153 39-68 (271)
167 2ghi_A Transport protein; mult 94.0 0.023 7.8E-07 56.8 2.7 30 124-153 40-69 (260)
168 2x8a_A Nuclear valosin-contain 94.0 0.027 9.2E-07 56.6 3.2 27 126-154 42-68 (274)
169 1rj9_A FTSY, signal recognitio 93.9 0.05 1.7E-06 55.8 5.3 40 128-169 100-139 (304)
170 2qi9_C Vitamin B12 import ATP- 93.9 0.023 7.8E-07 56.6 2.6 31 123-153 19-49 (249)
171 3n70_A Transport activator; si 93.9 0.095 3.3E-06 46.9 6.5 27 129-155 23-49 (145)
172 3aez_A Pantothenate kinase; tr 93.9 0.053 1.8E-06 55.7 5.3 31 126-156 86-116 (312)
173 1rz3_A Hypothetical protein rb 93.9 0.055 1.9E-06 51.1 5.0 43 126-170 18-60 (201)
174 2nq2_C Hypothetical ABC transp 93.9 0.024 8.2E-07 56.5 2.6 29 125-153 26-54 (253)
175 1knq_A Gluconate kinase; ALFA/ 93.8 0.035 1.2E-06 50.7 3.5 27 128-154 6-32 (175)
176 2yz2_A Putative ABC transporte 93.8 0.025 8.6E-07 56.6 2.7 29 124-152 27-55 (266)
177 3b85_A Phosphate starvation-in 93.8 0.026 9E-07 54.6 2.7 27 127-153 19-45 (208)
178 1ye8_A Protein THEP1, hypothet 93.8 0.034 1.2E-06 52.4 3.4 24 132-155 2-25 (178)
179 3vfd_A Spastin; ATPase, microt 93.8 0.11 3.7E-06 54.3 7.6 35 130-169 148-182 (389)
180 1ixz_A ATP-dependent metallopr 93.8 0.031 1.1E-06 54.4 3.2 27 126-154 47-73 (254)
181 1pui_A ENGB, probable GTP-bind 93.8 0.018 6.1E-07 53.7 1.4 32 119-151 16-47 (210)
182 1sq5_A Pantothenate kinase; P- 93.7 0.049 1.7E-06 55.4 4.7 30 126-155 76-105 (308)
183 2yyz_A Sugar ABC transporter, 93.7 0.03 1E-06 58.9 3.2 32 122-153 21-52 (359)
184 3rlf_A Maltose/maltodextrin im 93.7 0.03 1E-06 59.5 3.2 32 122-153 21-52 (381)
185 1z47_A CYSA, putative ABC-tran 93.7 0.03 1E-06 59.0 3.1 32 122-153 33-64 (355)
186 2it1_A 362AA long hypothetical 93.7 0.031 1.1E-06 58.9 3.2 32 122-153 21-52 (362)
187 1v43_A Sugar-binding transport 93.7 0.031 1.1E-06 59.1 3.2 32 122-153 29-60 (372)
188 3cm0_A Adenylate kinase; ATP-b 93.6 0.037 1.3E-06 50.8 3.2 26 129-154 3-28 (186)
189 1g29_1 MALK, maltose transport 93.6 0.033 1.1E-06 58.9 3.1 32 122-153 21-52 (372)
190 1iqp_A RFCS; clamp loader, ext 93.6 0.039 1.3E-06 54.9 3.5 29 128-156 44-72 (327)
191 2ffh_A Protein (FFH); SRP54, s 93.6 0.31 1.1E-05 52.4 10.8 88 129-225 97-188 (425)
192 3gd7_A Fusion complex of cysti 93.5 0.034 1.2E-06 59.2 3.0 29 125-153 42-70 (390)
193 3a00_A Guanylate kinase, GMP k 93.4 0.04 1.4E-06 51.4 3.1 25 130-154 1-25 (186)
194 1qvr_A CLPB protein; coiled co 93.4 0.11 3.6E-06 60.3 7.3 41 128-168 189-234 (854)
195 2bbw_A Adenylate kinase 4, AK4 93.4 0.045 1.5E-06 53.3 3.6 27 129-155 26-52 (246)
196 1ls1_A Signal recognition part 93.4 0.35 1.2E-05 49.0 10.4 43 129-173 97-139 (295)
197 3d31_A Sulfate/molybdate ABC t 93.4 0.027 9.3E-07 59.0 2.1 31 123-153 19-49 (348)
198 2ius_A DNA translocase FTSK; n 93.4 0.17 6E-06 55.7 8.6 52 124-175 161-212 (512)
199 2bdt_A BH3686; alpha-beta prot 93.3 0.04 1.4E-06 51.1 3.0 23 130-152 2-24 (189)
200 2zan_A Vacuolar protein sortin 93.3 0.076 2.6E-06 56.9 5.4 24 131-154 168-191 (444)
201 2og2_A Putative signal recogni 93.2 0.076 2.6E-06 55.9 5.3 43 126-170 153-195 (359)
202 3u61_B DNA polymerase accessor 93.2 0.061 2.1E-06 54.2 4.4 23 132-154 49-72 (324)
203 3ney_A 55 kDa erythrocyte memb 93.2 0.047 1.6E-06 52.8 3.4 28 126-153 15-42 (197)
204 2fna_A Conserved hypothetical 93.2 0.19 6.4E-06 50.2 7.9 25 131-155 31-55 (357)
205 3tau_A Guanylate kinase, GMP k 93.2 0.047 1.6E-06 52.0 3.2 26 128-153 6-31 (208)
206 1iy2_A ATP-dependent metallopr 93.2 0.045 1.5E-06 54.3 3.2 27 126-154 71-97 (278)
207 4b4t_H 26S protease regulatory 93.1 0.1 3.5E-06 56.9 6.2 24 132-155 245-268 (467)
208 2ce7_A Cell division protein F 93.1 0.11 3.7E-06 56.7 6.5 23 133-155 52-74 (476)
209 2j37_W Signal recognition part 93.1 0.34 1.2E-05 53.2 10.4 49 128-178 99-147 (504)
210 3syl_A Protein CBBX; photosynt 93.1 0.079 2.7E-06 52.7 4.9 28 130-157 67-94 (309)
211 1cke_A CK, MSSA, protein (cyti 93.1 0.054 1.9E-06 51.3 3.6 25 130-154 5-29 (227)
212 2bbs_A Cystic fibrosis transme 93.1 0.037 1.3E-06 56.4 2.5 30 124-153 58-87 (290)
213 2qor_A Guanylate kinase; phosp 93.1 0.054 1.8E-06 51.2 3.4 28 127-154 9-36 (204)
214 1oxx_K GLCV, glucose, ABC tran 93.0 0.028 9.5E-07 59.0 1.6 31 123-153 24-54 (353)
215 2qgz_A Helicase loader, putati 93.0 0.092 3.2E-06 53.6 5.4 38 129-168 151-189 (308)
216 3nh6_A ATP-binding cassette SU 93.0 0.022 7.6E-07 58.6 0.8 18 489-506 86-103 (306)
217 3nh6_A ATP-binding cassette SU 93.0 0.028 9.7E-07 57.8 1.6 30 124-153 74-103 (306)
218 3tui_C Methionine import ATP-b 93.0 0.046 1.6E-06 57.8 3.2 34 119-152 42-76 (366)
219 2plr_A DTMP kinase, probable t 93.0 0.081 2.8E-06 49.2 4.6 29 129-157 3-31 (213)
220 2pjz_A Hypothetical protein ST 93.0 0.04 1.4E-06 55.3 2.6 28 125-153 26-53 (263)
221 2pez_A Bifunctional 3'-phospho 92.9 0.086 2.9E-06 48.4 4.6 28 129-156 4-31 (179)
222 1s96_A Guanylate kinase, GMP k 92.9 0.051 1.7E-06 52.9 3.1 27 127-153 13-39 (219)
223 3iij_A Coilin-interacting nucl 92.8 0.069 2.3E-06 49.0 3.7 27 128-154 9-35 (180)
224 2ewv_A Twitching motility prot 92.8 0.096 3.3E-06 55.0 5.2 23 487-509 140-162 (372)
225 3uk6_A RUVB-like 2; hexameric 92.7 0.085 2.9E-06 53.8 4.7 26 487-512 74-99 (368)
226 1vt4_I APAF-1 related killer D 92.6 0.22 7.4E-06 59.7 8.4 43 130-173 150-194 (1221)
227 1ye8_A Protein THEP1, hypothet 92.6 0.053 1.8E-06 51.0 2.7 22 487-508 4-25 (178)
228 1lw7_A Transcriptional regulat 92.6 0.053 1.8E-06 56.3 2.9 28 127-154 165-194 (365)
229 1nks_A Adenylate kinase; therm 92.6 0.11 3.7E-06 47.5 4.7 33 132-166 3-35 (194)
230 1a5t_A Delta prime, HOLB; zinc 92.6 0.073 2.5E-06 54.6 3.9 26 132-157 26-51 (334)
231 1yqt_A RNAse L inhibitor; ATP- 92.5 0.069 2.4E-06 58.9 3.8 33 120-152 37-69 (538)
232 1t9h_A YLOQ, probable GTPase E 92.4 0.03 1E-06 57.8 0.7 32 121-152 164-195 (307)
233 1ofh_A ATP-dependent HSL prote 92.4 0.1 3.6E-06 51.4 4.6 27 129-155 49-75 (310)
234 3tr0_A Guanylate kinase, GMP k 92.3 0.054 1.9E-06 50.4 2.4 19 488-506 12-30 (205)
235 3kb2_A SPBC2 prophage-derived 92.3 0.076 2.6E-06 47.7 3.3 24 132-155 3-26 (173)
236 3trf_A Shikimate kinase, SK; a 92.3 0.083 2.8E-06 48.5 3.5 25 130-154 5-29 (185)
237 2ehv_A Hypothetical protein PH 92.3 0.11 3.9E-06 49.4 4.7 17 489-505 36-52 (251)
238 2orw_A Thymidine kinase; TMTK, 92.3 0.13 4.3E-06 48.6 4.9 43 129-171 2-44 (184)
239 2onk_A Molybdate/tungstate ABC 92.3 0.068 2.3E-06 52.8 3.1 31 122-153 17-47 (240)
240 3hu3_A Transitional endoplasmi 92.2 0.14 4.7E-06 56.0 5.7 34 131-169 239-272 (489)
241 1zuh_A Shikimate kinase; alpha 92.1 0.082 2.8E-06 48.0 3.3 25 131-155 8-32 (168)
242 4e22_A Cytidylate kinase; P-lo 92.1 0.072 2.5E-06 52.5 3.1 27 128-154 25-51 (252)
243 2yv5_A YJEQ protein; hydrolase 92.1 0.051 1.8E-06 55.3 2.0 31 121-151 156-186 (302)
244 2p67_A LAO/AO transport system 92.0 0.13 4.3E-06 53.2 4.9 37 125-161 51-87 (341)
245 1kgd_A CASK, peripheral plasma 92.0 0.064 2.2E-06 49.8 2.4 21 487-507 9-29 (180)
246 2ewv_A Twitching motility prot 91.9 0.11 3.9E-06 54.5 4.5 31 127-157 133-163 (372)
247 2px0_A Flagellar biosynthesis 91.9 0.18 6.1E-06 51.4 5.8 44 127-171 102-145 (296)
248 3ec2_A DNA replication protein 91.9 0.073 2.5E-06 48.9 2.7 22 487-508 42-63 (180)
249 1jr3_A DNA polymerase III subu 91.9 0.33 1.1E-05 49.2 7.8 25 132-156 40-64 (373)
250 1hqc_A RUVB; extended AAA-ATPa 91.9 0.23 7.8E-06 49.6 6.5 26 130-155 38-63 (324)
251 4fcw_A Chaperone protein CLPB; 91.9 0.1 3.5E-06 51.7 3.9 38 131-170 48-85 (311)
252 1qhx_A CPT, protein (chloramph 91.8 0.093 3.2E-06 47.8 3.3 25 130-154 3-27 (178)
253 3c8u_A Fructokinase; YP_612366 91.8 0.1 3.4E-06 49.5 3.6 22 488-509 27-48 (208)
254 2rhm_A Putative kinase; P-loop 91.8 0.1 3.4E-06 48.0 3.5 26 129-154 4-29 (193)
255 3a00_A Guanylate kinase, GMP k 91.8 0.066 2.3E-06 49.9 2.3 21 488-508 6-26 (186)
256 2gj8_A MNME, tRNA modification 91.7 0.081 2.8E-06 48.3 2.8 24 129-152 3-26 (172)
257 1znw_A Guanylate kinase, GMP k 91.7 0.07 2.4E-06 50.6 2.3 19 489-507 26-44 (207)
258 1lvg_A Guanylate kinase, GMP k 91.6 0.072 2.5E-06 50.5 2.4 21 487-507 8-28 (198)
259 3j16_B RLI1P; ribosome recycli 91.6 0.099 3.4E-06 58.7 3.8 34 120-153 93-126 (608)
260 3fvq_A Fe(3+) IONS import ATP- 91.6 0.081 2.8E-06 55.8 2.9 19 489-507 36-54 (359)
261 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.081 2.8E-06 57.4 3.0 31 125-155 133-163 (460)
262 3nwj_A ATSK2; P loop, shikimat 91.6 0.073 2.5E-06 53.1 2.4 30 126-155 41-73 (250)
263 1zd8_A GTP:AMP phosphotransfer 91.6 0.09 3.1E-06 50.4 3.0 27 127-153 4-30 (227)
264 3p32_A Probable GTPase RV1496/ 91.5 0.88 3E-05 47.0 10.7 47 121-169 69-116 (355)
265 1ypw_A Transitional endoplasmi 91.5 0.21 7E-06 57.8 6.5 27 127-153 235-261 (806)
266 3cf2_A TER ATPase, transitiona 91.5 0.18 6.3E-06 58.4 6.0 31 132-167 240-270 (806)
267 2r62_A Cell division protease 91.5 0.093 3.2E-06 51.2 3.1 23 133-155 47-69 (268)
268 1d2n_A N-ethylmaleimide-sensit 91.5 0.34 1.2E-05 47.5 7.2 23 486-508 67-89 (272)
269 3sfz_A APAF-1, apoptotic pepti 91.5 0.1 3.6E-06 61.1 4.0 39 131-170 148-189 (1249)
270 2c95_A Adenylate kinase 1; tra 91.5 0.11 3.8E-06 47.8 3.4 27 128-154 7-33 (196)
271 2iyv_A Shikimate kinase, SK; t 91.4 0.11 3.6E-06 47.8 3.2 25 131-155 3-27 (184)
272 3jvv_A Twitching mobility prot 91.4 0.16 5.5E-06 53.2 5.0 31 127-157 120-150 (356)
273 3fb4_A Adenylate kinase; psych 91.4 0.11 3.8E-06 49.0 3.4 23 132-154 2-24 (216)
274 1via_A Shikimate kinase; struc 91.4 0.1 3.5E-06 47.7 3.1 24 132-155 6-29 (175)
275 1tev_A UMP-CMP kinase; ploop, 91.4 0.12 3.9E-06 47.4 3.4 26 129-154 2-27 (196)
276 2xxa_A Signal recognition part 91.3 0.82 2.8E-05 49.1 10.5 89 129-225 99-191 (433)
277 1u0l_A Probable GTPase ENGC; p 91.3 0.053 1.8E-06 55.0 1.1 32 121-152 160-191 (301)
278 1aky_A Adenylate kinase; ATP:A 91.2 0.12 4.2E-06 49.1 3.6 26 129-154 3-28 (220)
279 1ly1_A Polynucleotide kinase; 91.2 0.11 3.6E-06 47.1 2.9 21 132-152 4-24 (181)
280 2jaq_A Deoxyguanosine kinase; 91.2 0.12 4.3E-06 47.6 3.4 24 132-155 2-25 (205)
281 3dl0_A Adenylate kinase; phosp 91.1 0.11 3.7E-06 49.1 3.1 22 132-153 2-23 (216)
282 3be4_A Adenylate kinase; malar 91.1 0.12 4.3E-06 49.2 3.5 26 129-154 4-29 (217)
283 3rlf_A Maltose/maltodextrin im 91.1 0.11 3.6E-06 55.3 3.2 19 489-507 35-53 (381)
284 2bwj_A Adenylate kinase 5; pho 91.1 0.11 3.7E-06 48.0 3.0 27 128-154 10-36 (199)
285 3bk7_A ABC transporter ATP-bin 91.1 0.1 3.5E-06 58.5 3.3 33 120-152 107-139 (607)
286 2bjv_A PSP operon transcriptio 91.1 0.14 4.8E-06 50.0 3.9 43 130-174 29-71 (265)
287 2cdn_A Adenylate kinase; phosp 91.1 0.13 4.4E-06 48.2 3.4 26 129-154 19-44 (201)
288 3pxg_A Negative regulator of g 91.0 0.22 7.6E-06 53.6 5.7 29 128-156 199-227 (468)
289 1z6g_A Guanylate kinase; struc 91.0 0.088 3E-06 50.7 2.3 19 489-507 29-47 (218)
290 3tif_A Uncharacterized ABC tra 91.0 0.098 3.3E-06 51.4 2.7 19 489-507 37-55 (235)
291 2if2_A Dephospho-COA kinase; a 91.0 0.11 3.7E-06 48.6 2.9 21 132-152 3-23 (204)
292 1zp6_A Hypothetical protein AT 91.0 0.081 2.8E-06 48.7 1.9 18 488-505 14-31 (191)
293 2z4s_A Chromosomal replication 90.9 0.11 3.7E-06 55.7 3.2 29 487-515 134-162 (440)
294 2v54_A DTMP kinase, thymidylat 90.9 0.13 4.4E-06 47.8 3.3 26 129-154 3-28 (204)
295 2w0m_A SSO2452; RECA, SSPF, un 90.9 0.15 5.1E-06 47.8 3.7 44 488-533 28-71 (235)
296 4b4t_K 26S protease regulatory 90.8 0.97 3.3E-05 48.6 10.4 20 489-508 212-231 (428)
297 1z47_A CYSA, putative ABC-tran 90.8 0.12 4E-06 54.4 3.2 18 489-506 47-64 (355)
298 2bdt_A BH3686; alpha-beta prot 90.7 0.1 3.4E-06 48.3 2.3 18 488-505 7-24 (189)
299 2rcn_A Probable GTPase ENGC; Y 90.7 0.078 2.7E-06 55.9 1.8 32 121-152 206-237 (358)
300 4eaq_A DTMP kinase, thymidylat 90.7 0.22 7.7E-06 48.4 4.9 31 126-156 22-52 (229)
301 4a74_A DNA repair and recombin 90.6 0.088 3E-06 49.6 1.9 21 488-508 30-50 (231)
302 2pcj_A ABC transporter, lipopr 90.6 0.1 3.6E-06 50.7 2.4 18 489-506 36-53 (224)
303 2yyz_A Sugar ABC transporter, 90.6 0.13 4.3E-06 54.2 3.2 18 489-506 35-52 (359)
304 2vli_A Antibiotic resistance p 90.6 0.11 3.9E-06 47.3 2.5 26 129-154 4-29 (183)
305 2it1_A 362AA long hypothetical 90.6 0.13 4.4E-06 54.2 3.2 18 489-506 35-52 (362)
306 1kag_A SKI, shikimate kinase I 90.6 0.11 3.7E-06 47.1 2.4 20 488-507 9-28 (173)
307 4b3f_X DNA-binding protein smu 90.6 0.25 8.7E-06 55.2 5.8 27 132-158 207-233 (646)
308 3t61_A Gluconokinase; PSI-biol 90.6 0.15 5.3E-06 47.6 3.5 24 131-154 19-42 (202)
309 2f9l_A RAB11B, member RAS onco 90.6 0.13 4.6E-06 47.6 3.1 21 132-152 7-27 (199)
310 1m7g_A Adenylylsulfate kinase; 90.6 0.17 5.8E-06 47.9 3.8 29 127-155 22-50 (211)
311 1g29_1 MALK, maltose transport 90.6 0.13 4.3E-06 54.4 3.2 18 489-506 35-52 (372)
312 1p9r_A General secretion pathw 90.5 0.18 6.2E-06 54.0 4.4 30 128-157 165-194 (418)
313 1v43_A Sugar-binding transport 90.5 0.13 4.4E-06 54.4 3.2 18 489-506 43-60 (372)
314 3lw7_A Adenylate kinase relate 90.5 0.12 4E-06 46.0 2.5 19 132-150 3-21 (179)
315 1odf_A YGR205W, hypothetical 3 90.5 0.16 5.4E-06 51.7 3.7 30 127-156 28-57 (290)
316 3cf2_A TER ATPase, transitiona 90.5 0.26 8.8E-06 57.2 5.9 24 130-153 511-534 (806)
317 1htw_A HI0065; nucleotide-bind 90.4 0.12 3.9E-06 48.0 2.4 19 489-507 39-57 (158)
318 1zak_A Adenylate kinase; ATP:A 90.4 0.14 4.7E-06 48.8 3.0 27 129-155 4-30 (222)
319 2p5t_B PEZT; postsegregational 90.4 0.1 3.5E-06 51.2 2.2 30 125-154 27-56 (253)
320 3d31_A Sulfate/molybdate ABC t 90.3 0.12 4E-06 54.3 2.6 18 489-506 32-49 (348)
321 1svm_A Large T antigen; AAA+ f 90.2 0.13 4.3E-06 54.5 2.9 29 125-153 164-192 (377)
322 2www_A Methylmalonic aciduria 90.2 0.25 8.4E-06 51.3 5.0 28 130-157 74-101 (349)
323 1ak2_A Adenylate kinase isoenz 90.2 0.17 5.7E-06 48.8 3.5 27 129-155 15-41 (233)
324 2bbw_A Adenylate kinase 4, AK4 90.2 0.13 4.4E-06 50.0 2.7 27 486-512 30-56 (246)
325 1oix_A RAS-related protein RAB 90.2 0.14 4.9E-06 47.4 2.9 21 132-152 31-51 (191)
326 2z0h_A DTMP kinase, thymidylat 90.1 0.27 9.2E-06 45.2 4.7 25 133-157 3-27 (197)
327 1r6b_X CLPA protein; AAA+, N-t 90.1 0.34 1.2E-05 55.0 6.5 29 128-156 205-233 (758)
328 3m6a_A ATP-dependent protease 90.1 0.16 5.4E-06 56.0 3.6 34 122-155 100-133 (543)
329 2gza_A Type IV secretion syste 90.1 0.11 3.6E-06 54.4 2.1 31 125-155 170-200 (361)
330 1yqt_A RNAse L inhibitor; ATP- 90.1 0.13 4.5E-06 56.7 3.0 28 126-153 308-335 (538)
331 1b0u_A Histidine permease; ABC 90.1 0.13 4.5E-06 51.3 2.7 18 489-506 38-55 (262)
332 4a82_A Cystic fibrosis transme 90.1 0.051 1.8E-06 60.2 -0.3 18 489-506 373-390 (578)
333 3tqc_A Pantothenate kinase; bi 90.0 0.23 7.8E-06 51.5 4.5 25 132-156 94-118 (321)
334 2onk_A Molybdate/tungstate ABC 89.9 0.12 4.1E-06 51.1 2.2 19 489-507 30-48 (240)
335 3bos_A Putative DNA replicatio 89.9 0.2 7E-06 46.9 3.8 25 486-510 55-79 (242)
336 3b5x_A Lipid A export ATP-bind 89.9 0.14 4.7E-06 56.7 2.9 32 123-154 362-393 (582)
337 2w58_A DNAI, primosome compone 89.9 0.22 7.6E-06 46.3 4.0 24 487-510 58-81 (202)
338 1g6h_A High-affinity branched- 89.8 0.13 4.5E-06 51.0 2.5 19 489-507 39-57 (257)
339 4g1u_C Hemin import ATP-bindin 89.8 0.14 4.9E-06 51.3 2.7 19 489-507 43-61 (266)
340 1jjv_A Dephospho-COA kinase; P 89.8 0.16 5.4E-06 47.6 2.9 21 132-152 4-24 (206)
341 3gd7_A Fusion complex of cysti 89.8 0.15 5E-06 54.3 2.9 18 489-506 53-70 (390)
342 1ukz_A Uridylate kinase; trans 89.8 0.2 6.7E-06 46.8 3.5 25 129-153 14-38 (203)
343 2zu0_C Probable ATP-dependent 89.7 0.17 5.9E-06 50.6 3.2 17 489-505 52-68 (267)
344 1e6c_A Shikimate kinase; phosp 89.7 0.18 6.2E-06 45.5 3.1 25 131-155 3-27 (173)
345 2qz4_A Paraplegin; AAA+, SPG7, 89.7 0.19 6.7E-06 48.3 3.5 22 487-508 43-64 (262)
346 3lv8_A DTMP kinase, thymidylat 89.7 0.53 1.8E-05 46.5 6.7 31 129-159 26-56 (236)
347 2pbr_A DTMP kinase, thymidylat 89.6 0.32 1.1E-05 44.4 4.8 25 132-156 2-26 (195)
348 3b60_A Lipid A export ATP-bind 89.6 0.13 4.5E-06 56.9 2.5 31 123-153 362-392 (582)
349 2wji_A Ferrous iron transport 89.6 0.17 5.9E-06 45.4 2.9 22 131-152 4-25 (165)
350 4eun_A Thermoresistant glucoki 89.6 0.16 5.4E-06 47.8 2.7 20 488-507 34-53 (200)
351 2pt5_A Shikimate kinase, SK; a 89.6 0.19 6.6E-06 45.1 3.2 24 132-155 2-25 (168)
352 3gfo_A Cobalt import ATP-bindi 89.6 0.15 5.2E-06 51.5 2.7 19 489-507 40-58 (275)
353 2yl4_A ATP-binding cassette SU 89.6 0.13 4.6E-06 57.0 2.5 32 122-153 362-393 (595)
354 1sgw_A Putative ABC transporte 89.5 0.16 5.4E-06 49.4 2.7 18 489-506 41-58 (214)
355 1n0w_A DNA repair protein RAD5 89.5 0.35 1.2E-05 45.9 5.1 22 487-508 28-49 (243)
356 1sxj_E Activator 1 40 kDa subu 89.5 0.18 6.1E-06 51.1 3.2 30 127-156 33-62 (354)
357 1oxx_K GLCV, glucose, ABC tran 89.5 0.12 3.9E-06 54.3 1.8 18 489-506 37-54 (353)
358 1ji0_A ABC transporter; ATP bi 89.5 0.16 5.4E-06 50.0 2.7 18 489-506 38-55 (240)
359 2cbz_A Multidrug resistance-as 89.5 0.16 5.4E-06 49.9 2.7 19 489-507 37-55 (237)
360 1s96_A Guanylate kinase, GMP k 89.5 0.15 5E-06 49.7 2.4 20 488-507 21-40 (219)
361 2ytx_A Cold shock domain-conta 89.4 0.86 2.9E-05 39.3 7.0 47 419-470 19-67 (97)
362 3r20_A Cytidylate kinase; stru 89.4 0.2 6.8E-06 49.6 3.4 24 131-154 10-33 (233)
363 2olj_A Amino acid ABC transpor 89.4 0.16 5.5E-06 50.9 2.7 18 489-506 56-73 (263)
364 2j41_A Guanylate kinase; GMP, 89.4 0.15 5.1E-06 47.3 2.3 20 488-507 11-30 (207)
365 4b4t_J 26S protease regulatory 89.4 1.4 4.7E-05 47.2 10.1 22 489-510 188-209 (405)
366 1sxj_D Activator 1 41 kDa subu 89.4 0.22 7.5E-06 50.1 3.7 25 131-155 59-83 (353)
367 1vpl_A ABC transporter, ATP-bi 89.4 0.16 5.6E-06 50.6 2.7 18 489-506 47-64 (256)
368 1q3t_A Cytidylate kinase; nucl 89.4 0.22 7.6E-06 48.1 3.6 27 128-154 14-40 (236)
369 1xjc_A MOBB protein homolog; s 89.3 0.36 1.2E-05 45.6 4.9 30 132-161 6-35 (169)
370 3ozx_A RNAse L inhibitor; ATP 89.3 0.14 4.8E-06 56.6 2.4 28 126-153 290-317 (538)
371 2ff7_A Alpha-hemolysin translo 89.3 0.16 5.6E-06 50.2 2.7 19 489-507 41-59 (247)
372 2d2e_A SUFC protein; ABC-ATPas 89.3 0.19 6.6E-06 49.7 3.2 17 489-505 35-51 (250)
373 2zej_A Dardarin, leucine-rich 89.3 0.15 5.3E-06 46.6 2.3 21 132-152 4-24 (184)
374 3sr0_A Adenylate kinase; phosp 89.3 0.16 5.5E-06 49.0 2.6 32 132-170 2-33 (206)
375 2i3b_A HCR-ntpase, human cance 89.3 0.18 6.1E-06 48.0 2.8 21 488-508 6-26 (189)
376 1mv5_A LMRA, multidrug resista 89.3 0.17 5.8E-06 49.8 2.7 19 489-507 34-52 (243)
377 3qf4_B Uncharacterized ABC tra 89.2 0.15 5.1E-06 56.8 2.6 29 125-153 376-404 (598)
378 3a4m_A L-seryl-tRNA(SEC) kinas 89.2 0.35 1.2E-05 47.6 5.0 29 128-156 2-30 (260)
379 3kb2_A SPBC2 prophage-derived 89.2 0.18 6E-06 45.3 2.6 20 488-507 6-25 (173)
380 3uie_A Adenylyl-sulfate kinase 89.2 0.17 5.9E-06 47.5 2.6 22 488-509 30-51 (200)
381 3pxi_A Negative regulator of g 89.1 0.35 1.2E-05 55.0 5.6 66 128-224 199-274 (758)
382 2r44_A Uncharacterized protein 89.1 0.13 4.4E-06 52.0 1.8 27 129-155 45-71 (331)
383 2dyk_A GTP-binding protein; GT 89.1 0.21 7.2E-06 43.7 3.0 21 132-152 3-23 (161)
384 1in4_A RUVB, holliday junction 89.1 0.17 5.7E-06 51.9 2.7 22 487-508 55-76 (334)
385 1e4v_A Adenylate kinase; trans 89.1 0.21 7.3E-06 47.3 3.2 23 132-154 2-24 (214)
386 2dr3_A UPF0273 protein PH0284; 89.1 0.3 1E-05 46.4 4.2 45 487-533 27-71 (247)
387 3bk7_A ABC transporter ATP-bin 89.1 0.17 5.9E-06 56.7 3.0 28 126-153 378-405 (607)
388 2pze_A Cystic fibrosis transme 89.1 0.18 6.1E-06 49.2 2.7 19 489-507 40-58 (229)
389 1z2a_A RAS-related protein RAB 89.0 0.22 7.5E-06 43.8 3.1 21 132-152 7-27 (168)
390 2b8t_A Thymidine kinase; deoxy 89.0 0.43 1.5E-05 46.9 5.4 121 128-266 10-146 (223)
391 2r8r_A Sensor protein; KDPD, P 89.0 0.36 1.2E-05 47.9 4.8 52 129-182 4-57 (228)
392 1kao_A RAP2A; GTP-binding prot 88.9 0.22 7.6E-06 43.5 3.0 21 132-152 5-25 (167)
393 3tau_A Guanylate kinase, GMP k 88.9 0.17 5.8E-06 48.1 2.4 19 488-506 13-31 (208)
394 2ze6_A Isopentenyl transferase 88.9 0.19 6.6E-06 49.5 2.9 23 133-155 4-26 (253)
395 3b85_A Phosphate starvation-in 88.9 0.13 4.6E-06 49.6 1.7 18 489-506 28-45 (208)
396 2vp4_A Deoxynucleoside kinase; 88.9 0.14 4.7E-06 49.5 1.8 28 126-153 16-43 (230)
397 3sop_A Neuronal-specific septi 88.9 0.21 7.3E-06 50.1 3.2 24 132-155 4-27 (270)
398 3hws_A ATP-dependent CLP prote 88.9 0.2 6.7E-06 51.7 3.0 25 130-154 51-75 (363)
399 1sxj_C Activator 1 40 kDa subu 88.9 0.22 7.5E-06 50.7 3.3 24 133-156 49-72 (340)
400 1um8_A ATP-dependent CLP prote 88.8 0.27 9.2E-06 50.8 4.0 25 130-154 72-96 (376)
401 3asz_A Uridine kinase; cytidin 88.8 0.16 5.3E-06 47.8 2.0 20 489-508 12-31 (211)
402 1ixz_A ATP-dependent metallopr 88.8 0.17 5.8E-06 49.1 2.4 22 487-508 53-74 (254)
403 2qag_B Septin-6, protein NEDD5 88.8 0.19 6.6E-06 54.1 3.0 28 125-152 35-64 (427)
404 2nzj_A GTP-binding protein REM 88.8 0.22 7.4E-06 44.3 2.9 21 132-152 6-26 (175)
405 2qi9_C Vitamin B12 import ATP- 88.8 0.19 6.5E-06 49.9 2.7 18 489-506 32-49 (249)
406 2ihy_A ABC transporter, ATP-bi 88.7 0.19 6.5E-06 50.8 2.7 19 489-507 53-71 (279)
407 1gtv_A TMK, thymidylate kinase 88.7 0.11 3.9E-06 48.6 1.0 25 132-156 2-26 (214)
408 3tlx_A Adenylate kinase 2; str 88.7 0.25 8.6E-06 48.3 3.5 26 129-154 28-53 (243)
409 2ixe_A Antigen peptide transpo 88.7 0.19 6.5E-06 50.4 2.7 19 489-507 51-69 (271)
410 2yty_A Cold shock domain-conta 88.7 0.44 1.5E-05 40.4 4.5 51 417-472 17-69 (88)
411 1jbk_A CLPB protein; beta barr 88.7 0.21 7.2E-06 44.6 2.7 23 487-509 47-69 (195)
412 2yz2_A Putative ABC transporte 88.6 0.19 6.6E-06 50.1 2.7 18 489-506 39-56 (266)
413 2x8a_A Nuclear valosin-contain 88.6 0.18 6E-06 50.5 2.4 21 487-507 48-68 (274)
414 2dhr_A FTSH; AAA+ protein, hex 88.6 0.22 7.4E-06 54.7 3.2 26 127-154 63-88 (499)
415 3b60_A Lipid A export ATP-bind 88.6 0.15 5E-06 56.6 1.9 19 489-507 375-393 (582)
416 3b5x_A Lipid A export ATP-bind 88.6 0.16 5.4E-06 56.3 2.1 19 489-507 375-393 (582)
417 2wjg_A FEOB, ferrous iron tran 88.5 0.23 7.8E-06 45.0 2.9 22 131-152 8-29 (188)
418 1qf9_A UMP/CMP kinase, protein 88.5 0.29 1E-05 44.5 3.6 25 130-154 6-30 (194)
419 3upu_A ATP-dependent DNA helic 88.5 0.39 1.3E-05 51.3 5.1 28 132-159 47-74 (459)
420 2pt7_A CAG-ALFA; ATPase, prote 88.5 0.13 4.5E-06 53.1 1.4 31 125-155 166-196 (330)
421 4a82_A Cystic fibrosis transme 88.5 0.12 4.1E-06 57.3 1.2 30 124-153 361-390 (578)
422 1ni3_A YCHF GTPase, YCHF GTP-b 88.5 0.24 8.2E-06 52.7 3.4 29 124-152 14-42 (392)
423 3qf4_A ABC transporter, ATP-bi 88.5 0.096 3.3E-06 58.2 0.3 18 489-506 375-392 (587)
424 1r8s_A ADP-ribosylation factor 88.4 0.27 9.2E-06 43.3 3.2 22 132-153 2-23 (164)
425 2ghi_A Transport protein; mult 88.4 0.2 6.9E-06 49.9 2.7 18 489-506 52-69 (260)
426 1kht_A Adenylate kinase; phosp 88.4 0.33 1.1E-05 44.2 3.9 23 488-510 8-30 (192)
427 2nq2_C Hypothetical ABC transp 88.4 0.2 7E-06 49.7 2.7 19 489-507 37-55 (253)
428 1u8z_A RAS-related protein RAL 88.4 0.26 8.8E-06 43.1 3.1 21 132-152 6-26 (168)
429 1uf9_A TT1252 protein; P-loop, 88.4 0.24 8.4E-06 45.7 3.0 24 129-152 7-30 (203)
430 4gp7_A Metallophosphoesterase; 88.4 0.18 6E-06 46.5 2.0 14 489-502 15-28 (171)
431 2ce2_X GTPase HRAS; signaling 88.4 0.24 8.4E-06 43.1 2.9 21 132-152 5-25 (166)
432 1gvn_B Zeta; postsegregational 88.4 0.26 8.8E-06 49.7 3.4 29 125-153 28-56 (287)
433 1ojl_A Transcriptional regulat 88.3 0.33 1.1E-05 49.2 4.2 45 129-175 24-68 (304)
434 2p65_A Hypothetical protein PF 88.3 0.32 1.1E-05 43.5 3.7 23 487-509 47-69 (187)
435 2iw3_A Elongation factor 3A; a 88.3 0.21 7.3E-06 59.0 3.1 30 123-152 454-483 (986)
436 3kta_A Chromosome segregation 88.3 0.26 9E-06 45.1 3.1 28 125-153 22-49 (182)
437 2chg_A Replication factor C sm 88.3 0.28 9.5E-06 44.9 3.3 24 486-509 41-64 (226)
438 1x65_A UNR protein; cell-free 88.2 1.3 4.3E-05 37.7 7.1 48 418-470 8-56 (89)
439 1knq_A Gluconate kinase; ALFA/ 88.2 0.2 7E-06 45.5 2.3 21 487-507 12-32 (175)
440 1z08_A RAS-related protein RAB 88.2 0.26 9E-06 43.5 3.0 21 132-152 8-28 (170)
441 3eie_A Vacuolar protein sortin 88.2 0.21 7.3E-06 50.6 2.7 23 486-508 54-76 (322)
442 2c9o_A RUVB-like 1; hexameric 88.1 0.3 1E-05 52.3 3.9 27 130-156 63-89 (456)
443 1nks_A Adenylate kinase; therm 88.1 0.33 1.1E-05 44.1 3.7 23 488-510 6-28 (194)
444 1ek0_A Protein (GTP-binding pr 88.1 0.28 9.4E-06 43.1 3.1 21 132-152 5-25 (170)
445 1c1y_A RAS-related protein RAP 88.1 0.28 9.5E-06 43.1 3.1 21 132-152 5-25 (167)
446 3q85_A GTP-binding protein REM 88.1 0.26 8.9E-06 43.6 2.9 20 132-151 4-23 (169)
447 2z0h_A DTMP kinase, thymidylat 88.0 0.48 1.6E-05 43.5 4.8 22 489-510 6-27 (197)
448 3tui_C Methionine import ATP-b 88.0 0.25 8.7E-06 52.1 3.2 18 489-506 60-77 (366)
449 1rj9_A FTSY, signal recognitio 88.0 0.33 1.1E-05 49.7 4.0 22 489-510 108-129 (304)
450 1g16_A RAS-related protein SEC 87.9 0.27 9.2E-06 43.3 2.9 21 132-152 5-25 (170)
451 3sop_A Neuronal-specific septi 87.9 0.2 6.7E-06 50.3 2.2 23 488-510 7-29 (270)
452 1r2q_A RAS-related protein RAB 87.9 0.29 9.9E-06 43.0 3.1 21 132-152 8-28 (170)
453 1cr0_A DNA primase/helicase; R 87.9 0.31 1E-05 48.6 3.6 23 488-510 40-62 (296)
454 3i2z_B RNA chaperone, negative 87.9 0.4 1.4E-05 39.0 3.6 47 420-471 7-58 (71)
455 2erx_A GTP-binding protein DI- 87.9 0.27 9.3E-06 43.3 2.9 22 131-152 4-25 (172)
456 1wms_A RAB-9, RAB9, RAS-relate 87.8 0.29 9.8E-06 43.7 3.0 21 132-152 9-29 (177)
457 3qf4_A ABC transporter, ATP-bi 87.8 0.16 5.5E-06 56.4 1.7 29 125-153 364-392 (587)
458 1g8p_A Magnesium-chelatase 38 87.8 0.23 7.8E-06 50.0 2.6 26 130-155 45-70 (350)
459 2chq_A Replication factor C sm 87.8 0.24 8.2E-06 48.9 2.7 29 128-156 36-64 (319)
460 3lnc_A Guanylate kinase, GMP k 87.8 0.14 4.8E-06 49.2 1.0 19 488-506 32-51 (231)
461 1np6_A Molybdopterin-guanine d 87.7 0.5 1.7E-05 44.4 4.7 27 131-157 7-33 (174)
462 3e70_C DPA, signal recognition 87.7 0.33 1.1E-05 50.3 3.8 24 488-511 134-157 (328)
463 2ged_A SR-beta, signal recogni 87.7 0.29 9.9E-06 44.6 3.0 22 131-152 49-70 (193)
464 1tue_A Replication protein E1; 87.7 0.27 9.4E-06 48.3 3.0 28 127-154 55-82 (212)
465 1z0j_A RAB-22, RAS-related pro 87.7 0.3 1E-05 43.0 3.0 21 132-152 8-28 (170)
466 2ytv_A Cold shock domain-conta 87.7 0.49 1.7E-05 39.4 4.1 49 417-470 7-57 (79)
467 3bc1_A RAS-related protein RAB 87.7 0.3 1E-05 44.0 3.1 21 132-152 13-33 (195)
468 3q72_A GTP-binding protein RAD 87.6 0.25 8.7E-06 43.5 2.5 20 132-151 4-23 (166)
469 1ky3_A GTP-binding protein YPT 87.6 0.3 1E-05 43.5 3.0 21 132-152 10-30 (182)
470 2id0_A Exoribonuclease 2; RNAs 87.6 0.37 1.3E-05 54.4 4.5 60 404-472 8-67 (644)
471 3b9q_A Chloroplast SRP recepto 87.5 0.35 1.2E-05 49.4 3.8 22 489-510 106-127 (302)
472 2plr_A DTMP kinase, probable t 87.5 0.62 2.1E-05 43.1 5.2 24 487-510 8-31 (213)
473 3cam_A Cold-shock domain famil 87.5 0.4 1.4E-05 38.5 3.3 40 427-471 12-54 (67)
474 3cr8_A Sulfate adenylyltranfer 87.5 0.24 8.2E-06 55.0 2.8 32 126-157 365-396 (552)
475 1iy2_A ATP-dependent metallopr 87.5 0.24 8.1E-06 49.0 2.5 23 486-508 76-98 (278)
476 3vaa_A Shikimate kinase, SK; s 87.4 0.27 9.3E-06 46.1 2.7 21 487-507 29-49 (199)
477 2ga8_A Hypothetical 39.9 kDa p 87.3 0.35 1.2E-05 51.0 3.8 31 127-157 19-51 (359)
478 1upt_A ARL1, ADP-ribosylation 87.3 0.33 1.1E-05 42.9 3.1 24 129-152 6-29 (171)
479 2f1r_A Molybdopterin-guanine d 87.2 0.21 7.1E-06 46.9 1.8 26 131-156 3-28 (171)
480 3ozx_A RNAse L inhibitor; ATP 87.2 0.25 8.7E-06 54.5 2.8 27 127-153 22-48 (538)
481 2yvu_A Probable adenylyl-sulfa 87.2 0.42 1.4E-05 44.0 3.8 23 488-510 18-40 (186)
482 1z0f_A RAB14, member RAS oncog 87.2 0.33 1.1E-05 43.1 3.1 21 132-152 17-37 (179)
483 1h95_A CSD, Y-box binding prot 87.1 0.38 1.3E-05 39.9 3.1 62 419-493 9-79 (79)
484 2xb4_A Adenylate kinase; ATP-b 87.1 0.35 1.2E-05 46.4 3.4 23 132-154 2-24 (223)
485 2fn4_A P23, RAS-related protei 87.1 0.31 1.1E-05 43.4 2.9 23 131-153 10-32 (181)
486 1cke_A CK, MSSA, protein (cyti 87.1 0.26 8.8E-06 46.6 2.4 20 488-507 10-29 (227)
487 1m2o_B GTP-binding protein SAR 87.1 0.32 1.1E-05 44.9 2.9 24 129-152 22-45 (190)
488 2wwf_A Thymidilate kinase, put 87.0 0.38 1.3E-05 44.8 3.5 28 487-514 14-41 (212)
489 2orw_A Thymidine kinase; TMTK, 87.0 0.45 1.5E-05 44.7 4.0 38 487-524 7-44 (184)
490 3gmt_A Adenylate kinase; ssgci 87.0 0.3 1E-05 48.4 2.9 24 131-154 9-32 (230)
491 4dsu_A GTPase KRAS, isoform 2B 86.9 0.34 1.2E-05 43.5 3.0 21 132-152 6-26 (189)
492 3clv_A RAB5 protein, putative; 86.9 0.34 1.2E-05 43.7 3.0 21 132-152 9-29 (208)
493 2cvh_A DNA repair and recombin 86.9 0.35 1.2E-05 45.2 3.1 19 487-505 24-42 (220)
494 2pjz_A Hypothetical protein ST 86.9 0.21 7.2E-06 50.1 1.7 18 489-506 36-53 (263)
495 1l8q_A Chromosomal replication 86.9 0.39 1.3E-05 48.3 3.7 24 487-510 41-64 (324)
496 3ake_A Cytidylate kinase; CMP 86.8 0.37 1.2E-05 44.7 3.2 24 132-155 4-27 (208)
497 3ld9_A DTMP kinase, thymidylat 86.8 1.3 4.4E-05 43.4 7.3 33 129-161 20-53 (223)
498 2f9l_A RAB11B, member RAS onco 86.8 0.39 1.3E-05 44.5 3.4 23 484-506 6-28 (199)
499 2y8e_A RAB-protein 6, GH09086P 86.8 0.34 1.2E-05 43.0 2.9 21 132-152 16-36 (179)
500 1sxj_A Activator 1 95 kDa subu 86.7 0.49 1.7E-05 51.5 4.6 33 130-167 77-109 (516)
No 1
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-106 Score=856.05 Aligned_cols=372 Identities=56% Similarity=0.901 Sum_probs=361.3
Q ss_pred CCCCCceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCC
Q psy3765 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNG 80 (592)
Q Consensus 1 ~~~~~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing 80 (592)
++++++.++++||||+++|||||||+.++||+|+++|||||++|+|+|+||+||.+.|.|+.|+.+|+|++|++|++|||
T Consensus 49 ~~~~~~~~~~~g~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng 128 (427)
T 3l0o_A 49 QTESTGYFFGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINY 128 (427)
T ss_dssp GGSSSSEEEEEEEEEECTTSCEEEECGGGTTCCCSSCEEECHHHHHHTTCCTTCEEEEEEECCCSSSCSEEEEEEEEETT
T ss_pred HHhhcCceeEEEEEEEcCCCceEeeCCccCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEeCCCCCcccccceEEEecCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCC
Q psy3765 81 EKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSE 160 (592)
Q Consensus 81 ~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~ 160 (592)
.+|+....|+.|+.++|++|.+|.++++ ++++||+|+||+|+|||||||++|||++|+|||+|+++|+++++++|++
T Consensus 129 ~~p~~~~~r~~fe~l~Pi~P~~R~~le~---e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~d 205 (427)
T 3l0o_A 129 RPVEAVNDRVNFDNLTPDYPRERFILET---DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPD 205 (427)
T ss_dssp EEC----CCCCGGGSCEECCCSBCCCCC---STTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTT
T ss_pred CChHHhccccccccCCCCCchhhccccc---cchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999994 3899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCC
Q psy3765 161 AIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240 (592)
Q Consensus 161 ~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~ 240 (592)
++|||++||||++||++|+++++++||++|+|+||.+|++++++|+++||||||+|+||||++||+||||+|||||++++
T Consensus 206 v~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~ 285 (427)
T 3l0o_A 206 TIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPS 285 (427)
T ss_dssp SEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCC
T ss_pred eEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCC
Q psy3765 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLN 320 (592)
Q Consensus 241 Ge~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l 320 (592)
||+|++|||+++++.|++||||||+++++||||+|+|+++||||||+|||+|++++|+||||+|||+||++||||||||+
T Consensus 286 Ge~~s~Gypp~~~~~~~~~~erA~~ie~~GSIT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDvl 365 (427)
T 3l0o_A 286 GKLLTGGVDPAALYKPKRFFGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLL 365 (427)
T ss_dssp SCCCSSSCCSSCSHHHHHHHHTCEEESSSCEEEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCST
T ss_pred CCCCCCCcCchhhcchHHHHHhhcccCCCcceeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCCCCCccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhc
Q psy3765 321 KSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDA 375 (592)
Q Consensus 321 ~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~ 375 (592)
.|+||+++.+++++|++.++++|++|+.|+++++|.++++..+++++|++||..+
T Consensus 366 ~S~SR~~~~l~~~~h~~~a~~lr~~la~y~e~e~l~~ll~~~~~t~~n~~f~~~~ 420 (427)
T 3l0o_A 366 LSGTRREELLLDEETLKKVWLLRRMLSAMTEEEGLTLILNKLSETSSNEEFLKLI 420 (427)
T ss_dssp TCEETTGGGTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred ccccccccccCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999854
No 2
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=4e-104 Score=839.90 Aligned_cols=374 Identities=66% Similarity=1.043 Sum_probs=366.7
Q ss_pred CCCCceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCC
Q psy3765 2 TKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGE 81 (592)
Q Consensus 2 ~~~~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~ 81 (592)
+++++.++++||||+++|||||||++++||+|+++|||||++|+|+|+||+||.+.|.|+.|+++|||++|+++++||+.
T Consensus 46 ~~~~~~~~~~g~le~~~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~ 125 (422)
T 3ice_A 46 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 125 (422)
T ss_dssp HHTTCCCEEEEEEEECTTSCEEEECGGGTTCCCTTCEEBCHHHHHHHTCCTTCEEEEEEECCCSSCCSEEEEEEEEESSS
T ss_pred HhcCCceEEEEEEEEcCCCceEeeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEeCCCccchHHHHhccCcccCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCccccCCCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCe
Q psy3765 82 KPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA 161 (592)
Q Consensus 82 ~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~ 161 (592)
+|+..+.++.|++++|+||.+|..+++++|+|++||+|+||+++||+||||++||||+|+|||+|+++|+++++++|+++
T Consensus 126 ~pe~~~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v 205 (422)
T 3ice_A 126 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 205 (422)
T ss_dssp CHHHHTTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTS
T ss_pred ChhhhcCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCe
Confidence 99999999999999999999999999877789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCC
Q psy3765 162 IMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241 (592)
Q Consensus 162 ~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~G 241 (592)
+|||++||||++||++|+++++++||++|+|+||.+|++++++|+++|||||++|+||||++||+||||+||||+++++|
T Consensus 206 ~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~G 285 (422)
T 3ice_A 206 VLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 285 (422)
T ss_dssp EEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSS
T ss_pred eEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccchHHHhhcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCC
Q psy3765 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNK 321 (592)
Q Consensus 242 e~p~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~ 321 (592)
|+|++|||+++|+.|++||||||+++++||||+|+|+++||||||+|||+|++++|+||||+|||+||++||||||||+.
T Consensus 286 e~ps~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~giyPAIDvl~ 365 (422)
T 3ice_A 286 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 365 (422)
T ss_dssp CBCSSSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHTTCSSCBCTTT
T ss_pred CCCCCCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhcCCCCccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhc
Q psy3765 322 SGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDA 375 (592)
Q Consensus 322 S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~ 375 (592)
|+||+++.+++++|++.++++|++|+.|+++++++++++....+++|.++|..+
T Consensus 366 S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~~~~~~ll~~~~~t~~n~~~~~~~ 419 (422)
T 3ice_A 366 SGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 419 (422)
T ss_dssp CEESSGGGSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTTTSCHHHHHHHC-
T ss_pred cccccchhhCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999854
No 3
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=1.3e-81 Score=679.52 Aligned_cols=336 Identities=14% Similarity=0.087 Sum_probs=313.2
Q ss_pred CCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccc
Q psy3765 36 DDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKEN 115 (592)
Q Consensus 36 ~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~ 115 (592)
.+.-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.++++ .|++|.+|.++++ |++
T Consensus 73 ~g~~V~~-tg~~~~vpvg~~lLGRV~d~lG----------~PiD~~~~i~~~~~~~i~~-~~p~p~~R~~~~e----~l~ 136 (465)
T 3vr4_D 73 KNSSVRF-LGHPLQLGVSEDMIGRVFDGLG----------RPKDNGPEILPEKYLDING-EVINPIARDYPDE----FIQ 136 (465)
T ss_dssp TTCEEEE-CSSCCEEEECGGGTTEEEETTS----------CBCSCCCCCCCSEEEESSC-CCBCTTTEECCCC----BCB
T ss_pred CCCEEEE-CCCcceeecchhhccceeccCC----------cccCCCCCCcccceeeccC-cccCchhccCccc----ccc
Confidence 3445666 7899999999999999999999 5889998877777778877 5999999999998 899
Q ss_pred cccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHh--cCCCeEEEEEEeccchhHHHHHHhhc-------cEEE
Q psy3765 116 ITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITT--NHSEAIMIVMLIDERPEEVTEMQRSV-------RGEV 186 (592)
Q Consensus 116 TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~--~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~v 186 (592)
||||+||+|+|||||||++|||++|+|||+|++||+++... +++++.|||++||||++||+||++++ +|+|
T Consensus 137 TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvv 216 (465)
T 3vr4_D 137 TGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVM 216 (465)
T ss_dssp CSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEE
T ss_pred cCceEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEE
Confidence 99999999999999999999999999999999999998765 57889999999999999999999998 6899
Q ss_pred EEeCCCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcc
Q psy3765 187 IASTFDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAAR 264 (592)
Q Consensus 187 V~~t~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~ 264 (592)
|++|+|+||.+|++++++|+|+|||||+ +|+||||++||+||||+|+||||+++||+|+ +|||+++|+.+++|||||+
T Consensus 217 V~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg 296 (465)
T 3vr4_D 217 FMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAG 296 (465)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhh
Confidence 9999999999999999999999999998 6999999999999999999999999999997 7999999999999999999
Q ss_pred ccc-CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCC-----HHHHHH
Q psy3765 265 NIE-EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQ-----DDKLQK 338 (592)
Q Consensus 265 ~~~-~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~-----~~~~~~ 338 (592)
+++ ++||||+|+|++++ +||++|||++++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|+++
T Consensus 297 ~~~~~~GSIT~i~tv~~~-~dD~~~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~ 375 (465)
T 3vr4_D 297 RIRGLKGSVTQIPILTMP-EDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAAT 375 (465)
T ss_dssp EETTCSCEEEEEEEEECG-GGCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHH
T ss_pred ccCCCCCcEEEEEEEEec-CCCcccchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhhcCcccCCHHHHHH
Confidence 986 48999999999987 47999999999999999999999999999999999999999999998877 899999
Q ss_pred HHHHHHHHhccccHHHHHhccccccCChhhhHHHhh-ccchhHHHhhcccc
Q psy3765 339 IWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKD-ACMPLVLAETQTID 388 (592)
Q Consensus 339 ~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~-~~i~e~~l~q~~f~ 388 (592)
++++++.|++|++++++++++|.+++++.++..+.. +.+.+.|++|+.++
T Consensus 376 a~~l~~~~~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~~~e 426 (465)
T 3vr4_D 376 MNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYT 426 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHTTCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998884 55567888887754
No 4
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=1.9e-81 Score=680.98 Aligned_cols=334 Identities=16% Similarity=0.106 Sum_probs=307.7
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
.-|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.++++ .|++|.+|.++++ |++||
T Consensus 76 ~~V~~-tg~~l~vpvg~~lLGRV~d~lG----------~PiDg~~~i~~~~~~~i~~-~~p~p~~R~~~~e----~l~TG 139 (469)
T 2c61_A 76 CGVIF-TGETLKLPASVDLLGRILSGSG----------EPRDGGPRIVPDQLLDING-AAMNPYARLPPKD----FIQTG 139 (469)
T ss_dssp ----C-EEEBCEEEECGGGTTCEEETTS----------CBSSSCCCCCCSEEEESSS-CSSCCBCSCCCCS----BCBCS
T ss_pred CEEEE-cCCCcEEEccccceeeEEcccC----------CCCCCCCCCCccccccccC-ccCCccccccccc----cccee
Confidence 34555 6899999999999999999999 5889988766666678877 5899999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCC--CeEEEEEEeccchhHHHHHHhhc-------cEEEEE
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHS--EAIMIVMLIDERPEEVTEMQRSV-------RGEVIA 188 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~--~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~ 188 (592)
||+||+|+|||||||++|||++|+|||+|+++|+++...|++ +..|||++||||++||+||++++ +|+||+
T Consensus 140 ir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~ 219 (469)
T 2c61_A 140 ISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFL 219 (469)
T ss_dssp CHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred eEeeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEE
Confidence 999999999999999999999999999999999998776543 57799999999999999999998 689999
Q ss_pred eCCCCCHHHHHHHHHhHHHHHHHHH-HcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhcccc
Q psy3765 189 STFDEPAYRHVQVAEMVLEKAKRLV-EMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNI 266 (592)
Q Consensus 189 ~t~d~~~~~r~~~~~~a~t~AE~~r-~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~ 266 (592)
+|+|+||.+|++++++|+|+||||| |+|+|||+++||+||||+|+||||+++||+|+ +|||+++|+.+++||||||++
T Consensus 220 ~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~ 299 (469)
T 2c61_A 220 NLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 299 (469)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEB
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhcccc
Confidence 9999999999999999999999999 59999999999999999999999999999997 899999999999999999998
Q ss_pred c-CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCC-----CCHHHHHHHH
Q psy3765 267 E-EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELL-----IQDDKLQKIW 340 (592)
Q Consensus 267 ~-~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~-----~~~~~~~~~~ 340 (592)
+ ++||||+|+|++++ +||++|||++++++|+||||+|||+||++||||||||+.|+||+++.+ ++++|++.++
T Consensus 300 ~~~~GSIT~i~~v~~~-~dD~~dPI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~~~~~~~~a~ 378 (469)
T 2c61_A 300 KGAKGSVTQIPILSMP-GDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 378 (469)
T ss_dssp TTSSCEEEEEEEEECC-SCTTTSCCCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHH
T ss_pred CCCCCceeeeeeeecC-CCCcCcchHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccCCHHHHHHHH
Confidence 5 58999999999887 579999999999999999999999999999999999999999999987 8899999999
Q ss_pred HHHHHHhccccHHHHHhccccccCChhhhHHHhh-ccchhHHHhhcccc
Q psy3765 341 VLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKD-ACMPLVLAETQTID 388 (592)
Q Consensus 341 ~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~-~~i~e~~l~q~~f~ 388 (592)
++++.|++|++++++.+++|++++++.++..++. +.+.+.|++|+.|+
T Consensus 379 ~l~~~l~~~~eL~~i~~~~G~~~l~d~~~~~l~~~~~i~~~fL~Q~~~~ 427 (469)
T 2c61_A 379 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNE 427 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTCCCTTC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999988884 44444599998866
No 5
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=1.4e-81 Score=682.16 Aligned_cols=331 Identities=15% Similarity=0.173 Sum_probs=309.6
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
..|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+++++.. |++|.+|.++.+ |++||
T Consensus 77 ~~V~~-tg~~~~vpvG~~lLGRV~d~lG----------~PiDg~~~~~~~~~~pi~~~-~P~~~~r~~~~e----~l~TG 140 (482)
T 2ck3_D 77 QKVLD-SGAPIRIPVGPETLGRIMNVIG----------EPIDERGPIKTKQFAAIHAE-APEFVEMSVEQE----ILVTG 140 (482)
T ss_dssp CEEEE-CSSSCEEECSGGGBTCEECTTS----------CBCSSSCSCCCCCEEESCCC-CCCGGGCCCCCC----EECCS
T ss_pred CEEEE-cCCcceeeccccccCCEEcccC----------cCcCCcCCCCcccccccccc-CCchHHhcccCc----CCccc
Confidence 34555 6899999999999999999999 58899888776778889884 889999999988 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------------cE
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------------RG 184 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------------~~ 184 (592)
||+||+|+|||||||++|||++|+|||+|+++|++++.++|+++ |||++||||++||+||++++ ++
T Consensus 141 ir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v-~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 141 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY-SVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSE-EEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred eEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCE-EEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 99999999999999999999999999999999999988778887 78999999999999999987 79
Q ss_pred EEEEeCCCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhh
Q psy3765 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGA 262 (592)
Q Consensus 185 ~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~er 262 (592)
+||++|+|+||.+|++++++|+|+|||||| +|+||||++||+||||+|+||||+++||+|+ +||||++|+.+++||||
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ER 299 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 299 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHh
Confidence 999999999999999999999999999999 9999999999999999999999999999997 69999999999999999
Q ss_pred cccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCcccc-CCCCCHHHHHHHHH
Q psy3765 263 ARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE-ELLIQDDKLQKIWV 341 (592)
Q Consensus 263 A~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~-~~~~~~~~~~~~~~ 341 (592)
|++ .++||||+|+|+++++ ||++|||+|++++++||||+|||+||++||||||||+.|+||++ +.+++++|++.+++
T Consensus 300 ag~-~~~GSIT~i~tv~v~~-dD~tdPi~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i~~~~~~~~a~~ 377 (482)
T 2ck3_D 300 ITT-TKKGSITSVQAIYVPA-DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARG 377 (482)
T ss_dssp SSC-CSSCCEEEEEEEECGG-GCTTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHHHCHHHHHHHHH
T ss_pred hcC-CCCCceeeeEEEEecC-CCCCCccHHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCcccCCHHHHHHHHH
Confidence 997 4789999999999884 89999999999999999999999999999999999999999998 56889999999999
Q ss_pred HHHHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhccc
Q psy3765 342 LRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTI 387 (592)
Q Consensus 342 lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f 387 (592)
+|++|++|+++++|++++|++++++.++..++.....+.|+.|+.|
T Consensus 378 lr~~la~y~el~~li~i~G~~~l~~~d~~~l~~~~~i~~fL~Q~~~ 423 (482)
T 2ck3_D 378 VQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQ 423 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTCCCCG
T ss_pred HHHHHHhhhHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCch
Confidence 9999999999999999999999999999999955555679888754
No 6
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=3.6e-81 Score=675.79 Aligned_cols=335 Identities=16% Similarity=0.131 Sum_probs=312.1
Q ss_pred CCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccc
Q psy3765 36 DDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKEN 115 (592)
Q Consensus 36 ~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~ 115 (592)
.+..|.+ +++.+.+++|+.++|||+|+.| +|+|+.++.....+.++++ .|++|.+|.++++ |++
T Consensus 69 ~g~~V~~-tg~~~~vpvg~~lLGRV~d~lG----------~PiD~~~~i~~~~~~~i~~-~~p~p~~R~~~~e----~l~ 132 (464)
T 3gqb_B 69 ATTSVSL-VEDVARLGVSKEMLGRRFNGIG----------KPIDGLPPITPEKRLPITG-LPLNPVARRKPEQ----FIQ 132 (464)
T ss_dssp SSCEEEE-EESSCEEEECSTTTTEEEETTC----------CBCSSSCCCCCSEEEETTC-CCBCGGGBCCCCC----BCB
T ss_pred CCCEEEE-CCCCcEEEeChHhcCCEeccCC----------cccCCCccccCcceeeccC-CCCChhhccCccc----ccc
Confidence 3445666 7899999999999999999999 5889998877777788877 5999999999998 899
Q ss_pred cccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHh---------cCCCeEEEEEEeccchhHHHHHHhhc----
Q psy3765 116 ITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITT---------NHSEAIMIVMLIDERPEEVTEMQRSV---- 182 (592)
Q Consensus 116 TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~---------~~~~~~~I~~lIGeR~~Ev~e~~~~~---- 182 (592)
||||+||+|+|||||||++|||++|+|||+|+++|+++... .++++.|||++||||++||++|++++
T Consensus 133 TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g 212 (464)
T 3gqb_B 133 TGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTG 212 (464)
T ss_dssp CSCHHHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTS
T ss_pred CcceeeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999998765 37889999999999999999999998
Q ss_pred ---cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccch
Q psy3765 183 ---RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPK 257 (592)
Q Consensus 183 ---~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~ 257 (592)
+|+||++|+|+||.+|++++++|+|+|||||+ +|+||||++||+||||+|+||||+++||+|+ +|||+++|+.++
T Consensus 213 ~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~ 292 (464)
T 3gqb_B 213 ALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLA 292 (464)
T ss_dssp GGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHH
T ss_pred cccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhH
Confidence 68999999999999999999999999999998 7999999999999999999999999999997 799999999999
Q ss_pred HHHhhccccc-CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCC----
Q psy3765 258 RFFGAARNIE-EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQ---- 332 (592)
Q Consensus 258 ~~~erA~~~~-~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~---- 332 (592)
+|||||++++ ++||||+|+|++++ +||++|||++++++|+||||+|||+||++||||||||+.|+||+|+.+++
T Consensus 293 ~l~ERag~~~~~~GSIT~l~~v~~~-~dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~ 371 (464)
T 3gqb_B 293 TIYERAGVVEGKKGSVTQIPILSMP-DDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKT 371 (464)
T ss_dssp HHHTSCBCBTTCSCEEEEEEEEEET-TSCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTSSTTTS
T ss_pred HHHHhhcccCCCCCcEEEEEEEEcc-CCCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhcCcccC
Confidence 9999999986 48999999999987 57999999999999999999999999999999999999999999998888
Q ss_pred -HHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhh-ccchhHHHhhcccc
Q psy3765 333 -DDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKD-ACMPLVLAETQTID 388 (592)
Q Consensus 333 -~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~-~~i~e~~l~q~~f~ 388 (592)
++|++.++++++.|++|++++++++++|.+++++.++..+.. +.+.+.|++|+ ++
T Consensus 372 ~~~h~~~a~~l~~~~~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e 428 (464)
T 3gqb_B 372 REDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQG-QQ 428 (464)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTSSSCSCCCCSHHHHTTHHHHHHHHTTTCCT-TC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhHHHHHHhcCCC-CC
Confidence 899999999999999999999999999999999999888884 45556888886 54
No 7
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=8e-82 Score=686.46 Aligned_cols=331 Identities=15% Similarity=0.175 Sum_probs=309.0
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
.-|.+ +++++.+++|+.++|||+|+.| +|+|+.++.....++++.. .|++|.+|.++++ |++||
T Consensus 89 ~~V~~-tg~~~~vpvG~~lLGRV~d~lG----------~PiD~~~~i~~~~~~pi~~-~~p~~~~r~~~~e----~l~TG 152 (498)
T 1fx0_B 89 MEVID-TGAPLSVPVGGPTLGRIFNVLG----------EPVDNLRPVDTRTTSPIHR-SAPAFTQLDTKLS----IFETG 152 (498)
T ss_dssp CEEEE-CSSSCEEEESSTTTTCEECTTS----------CBCSSSSCCCCSEEEESCC-CCCCGGGCCCCCC----CCCCS
T ss_pred CEEEe-cCCcceEecCccceeeEEcccc----------cCCCCcCCcCCCceecccc-CCCchhhhccccc----ccccc
Confidence 34555 6899999999999999999999 5889988776667788887 5889999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc--------------c
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV--------------R 183 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~--------------~ 183 (592)
||+||+|+|||||||++|||++|+|||+|+++|++++.++|+++ |||++||||++||+||++++ |
T Consensus 153 irvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v-~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 153 IKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGV-SVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp CTTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSC-EEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred eeEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCE-EEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 99999999999999999999999999999999999988778886 78999999999999999987 6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHh
Q psy3765 184 GEVIASTFDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFG 261 (592)
Q Consensus 184 ~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~e 261 (592)
++||++|+|+||.+|++++++|+|+|||||| +|+||||++||+||||+|+||||+++||+|+ +||||++|+.+++|||
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~E 311 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQE 311 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSS
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHH
Confidence 8999999999999999999999999999999 9999999999999999999999999999997 6999999999999999
Q ss_pred hcccccCCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCcccc-CCCCCHHHHHHHH
Q psy3765 262 AARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE-ELLIQDDKLQKIW 340 (592)
Q Consensus 262 rA~~~~~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~-~~~~~~~~~~~~~ 340 (592)
||++ .++||||+|+|+++| +||++|||++++++|+||||+|||+||++||||||||+.|+||++ +.+++++|++.++
T Consensus 312 Rag~-~~~GSIT~i~tV~v~-~dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i~~~~h~~~a~ 389 (498)
T 1fx0_B 312 RITS-TKEGSITSIQAVYVP-ADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQ 389 (498)
T ss_dssp SSSC-CTTCEECCEEEEECG-GGCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTTTCHHHHHHHH
T ss_pred hccC-CCCCceeeeEEEEcc-CCCcCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCcccCCHHHHHHHH
Confidence 9998 478999999999987 589999999999999999999999999999999999999999997 6688999999999
Q ss_pred HHHHHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhccc
Q psy3765 341 VLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTI 387 (592)
Q Consensus 341 ~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f 387 (592)
++|++|++|++++++++++|+++++++++..++..-..+.|+.|+.|
T Consensus 390 ~lr~~la~y~el~~li~i~G~d~ls~~d~~~l~~~~~i~~fL~Q~~~ 436 (498)
T 1fx0_B 390 RVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFF 436 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHhhHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCch
Confidence 99999999999999999999999999999999955555679888854
No 8
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.6e-80 Score=675.49 Aligned_cols=340 Identities=16% Similarity=0.176 Sum_probs=311.5
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCccccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENIT 117 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TG 117 (592)
.-|.+ +++.+.+++|+.++|||+|+.| +|||+.+|.....+++++. .|++|.+|.++++ |++||
T Consensus 99 ~~V~~-tg~~~~vpvG~~lLGRVvd~lG----------~PiDg~g~i~~~~~~pi~~-~~P~~~~R~~v~e----pl~TG 162 (515)
T 2r9v_A 99 HTVRR-LKRIIEVPVGEELLGRVVNPLG----------EPLDGKGPINAKNFRPIEI-KAPGVIYRKPVDT----PLQTG 162 (515)
T ss_dssp CEEEE-EEEECEEEESGGGTTCEECTTS----------CBCSSSCCCCCSEEEESCC-CCCCGGGBCCCCS----EECCS
T ss_pred CEEEE-eCCcceeecCccceeeEEcCCC----------CCcCCCCCCCccceeeccc-CCCCcccccCCCc----chhcC
Confidence 44555 6899999999999999999999 5789988877667778987 4889999999998 89999
Q ss_pred cceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 118 GRIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 118 iraID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
||+||+|+|||||||++|||++|+|||+| +.+|+++ .++++.|||++||||++||++|++++ +|+||++
T Consensus 163 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~---~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 163 IKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQ---KGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp CHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTT---TTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccccCCEEEEEcCCCCCccHHHHHHHHHh---hcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 99999999999999999999999999999 5677764 45789999999999999999999998 5899999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc-
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE- 267 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~- 267 (592)
|+|+||.+|+++|++|+|+||||||+|+|||+++||+||||+||||||+++||+|+ +||||++|+.+++|+|||++++
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~ 319 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLND 319 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999997 7999999999999999999985
Q ss_pred --CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHH
Q psy3765 268 --EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKL 345 (592)
Q Consensus 268 --~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~ 345 (592)
++||||+|+|++++ +||++|||++++++|+||||+|||+||++||||||||+.|+||+++.++.++|+++++++|+.
T Consensus 320 ~~~~GSITal~~v~~~-~~D~s~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~~~~~~~~~~~a~~lr~~ 398 (515)
T 2r9v_A 320 KLGGGSLTALPIVETQ-ANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSAQIKAMKQVAGMLRID 398 (515)
T ss_dssp TTTSCEEEEEEEEEES-TTCTTSHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGTTTSCHHHHHHHHHHHHH
T ss_pred cCCCcceEEeeeeecc-CCCccccchhhhccccceEEEEchHHHhCCCCCeeccccccccCCcccCCHHHHHHHHHHHHH
Confidence 57999999999987 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHHHH
Q psy3765 346 LYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMF 404 (592)
Q Consensus 346 l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~ 404 (592)
|++|+++++++++ | .++++.++..|+.....++|+.|+.|+ ..++.+|-.++
T Consensus 399 la~y~el~~~~~~-G-~~l~~~~~~~l~~~~~i~~fL~Q~~~~-----~~~~~e~~~~l 450 (515)
T 2r9v_A 399 LAQYRELETFAQF-A-TELDPATRAQIIRGQRLMELLKQEQYS-----PMPVEEQVVVL 450 (515)
T ss_dssp HHHHHHHHTTGGG-C-SCCCHHHHHHHHHHHHHHHHTCCCTTC-----CCCHHHHHHHH
T ss_pred HhhhhHHHHHHHh-c-cCCCHHHHHHHHHHHHHHHHhcCCCCC-----CCCHHHHHHHH
Confidence 9999999999997 5 578888999999666666699998876 44566665543
No 9
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=6.4e-80 Score=672.01 Aligned_cols=341 Identities=16% Similarity=0.171 Sum_probs=312.0
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
..-|.+ +++.+.+++|+.++|||+|+.| +|||+.+|.....+.+++. .|++|.+|.++++ |++|
T Consensus 85 G~~V~~-tg~~~~vpvG~~lLGRVvd~lG----------~PiDg~g~i~~~~~~pi~~-~~p~~~~R~~v~e----pl~T 148 (502)
T 2qe7_A 85 GTQVKR-TGRIMEVPVGEALLGRVVNPLG----------QPLDGRGPIETAEYRPIES-PAPGVMDRKSVHE----PLQT 148 (502)
T ss_dssp TCEEEE-EEEESEEECSGGGTTCEECTTC----------CBSSCSCCCCCCCEEESSC-CCCCTTSBCCCCS----BCCC
T ss_pred CCEEEE-eCCcceEEcccccceEEEccCC----------CCCCCCCCCCCCceeeccC-CCCCcccccCCCC----cccc
Confidence 344555 6899999999999999999999 5899998877777788987 5889999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEE
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIA 188 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~ 188 (592)
|||+||+|+|||||||++|||++|+|||+| +.+|+++ .++++.|||++||||++||++|++++ +|+||+
T Consensus 149 GiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~---~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 149 GIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQ---KGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp SCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGG---GSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred ceeecccccccccCCEEEEECCCCCCchHHHHHHHHHh---hcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 999999999999999999999999999999 5567664 46889999999999999999999998 589999
Q ss_pred eCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc
Q psy3765 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE 267 (592)
Q Consensus 189 ~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~ 267 (592)
+|+|+||.+|++++++|+|+||||||+|+|||+++||+||||+||||||+++||+|+ +||||++|+.+++|+|||+++.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~ 305 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 305 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999999999999996 7999999999999999999985
Q ss_pred ---CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHH
Q psy3765 268 ---EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRK 344 (592)
Q Consensus 268 ---~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~ 344 (592)
++||||+|+|++++ +||++|||++++++|+||||+|||+||++||||||||+.|+||+++.++.++|+++++++|+
T Consensus 306 ~~~~~GSITal~~v~~~-~dD~s~pI~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~~~~~~~~~a~~lr~ 384 (502)
T 2qe7_A 306 DEKGGGSLTALPFIETQ-AGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAAQIKAMKKVAGTLRL 384 (502)
T ss_dssp TTTTCCEEEEEEEEECS-TTCCSSHHHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGGGGSCHHHHHHHHHHHH
T ss_pred ccCCCcceeEEEEEEcc-CCCcccchhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCCccCCHHHHHHHHHHHH
Confidence 58999999999887 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHHHH
Q psy3765 345 LLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMF 404 (592)
Q Consensus 345 ~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~ 404 (592)
.|++|+++++++++ | .++++.++..|+.....++|+.|+.|+ ..++.+|-.++
T Consensus 385 ~la~y~el~~~~~~-G-~~l~~~~~~~l~~~~~i~~fL~Q~~~~-----~~~~~~~~~~l 437 (502)
T 2qe7_A 385 DLAQYRELQAFAQF-G-SDLDKATQAKLNRGERTVEILKQDEHK-----PMPVEEQVISI 437 (502)
T ss_dssp HHHHHHHGGGSTTC-C-CCTTTTTTTTHHHHHHHHHHHCCCTTC-----CCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHh-c-cCCCHHHHHHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHH
Confidence 99999999999987 5 578888899999555556699998876 44566665543
No 10
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=2.6e-80 Score=676.12 Aligned_cols=344 Identities=16% Similarity=0.165 Sum_probs=315.3
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
..-|.+ +++.+.+++|+.++|||+|+.| +|||+.+|.....+.+++. .|++|.+|.++++ |++|
T Consensus 85 G~~V~~-tg~~~~vpvg~~lLGRVvd~lG----------~PiDg~g~i~~~~~~pi~~-~~p~~~~R~~v~e----pl~T 148 (510)
T 2ck3_A 85 GDIVKR-TGAIVDVPVGEELLGRVVDALG----------NAIDGKGPIGSKARRRVGL-KAPGIIPRISVRE----PMQT 148 (510)
T ss_dssp TCEEEE-CCCCCEEEESGGGTTCEECTTS----------CBCSSSCCCCCSEEEESSC-CCCCSTTBCCCCS----BCCC
T ss_pred CCEEEE-eCCcceeecCccceeeEEccCC----------cCcCCCCCCCccceeeccc-CCCCcccccccCc----cccc
Confidence 344555 6899999999999999999999 5899998876666778887 5889999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHh-----cCCCeEEEEEEeccchhHHHHHHhhc-------c
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITT-----NHSEAIMIVMLIDERPEEVTEMQRSV-------R 183 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~-----~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~ 183 (592)
|||+||+|+|||||||++|||++|+|||+| +.+|+++..+ +|+++.|||++||||++||++|++++ +
T Consensus 149 GiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~ 228 (510)
T 2ck3_A 149 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKY 228 (510)
T ss_dssp SCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGG
T ss_pred cceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999 7789988874 46888899999999999999999998 5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhh
Q psy3765 184 GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGA 262 (592)
Q Consensus 184 ~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~er 262 (592)
|+||++|+|+||.+|++++++|+|+||||||+|+|||+++||+||||+||||||+++||+|+ +|||+++|+.+++|+||
T Consensus 229 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlER 308 (510)
T 2ck3_A 229 TIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 308 (510)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTT
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999997 79999999999999999
Q ss_pred ccccc---CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHH
Q psy3765 263 ARNIE---EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKI 339 (592)
Q Consensus 263 A~~~~---~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~ 339 (592)
|+++. ++||||+|+|+++++ ||++|||++++++|+||||+|||+||++||||||||+.|+||+++.++.++|++++
T Consensus 309 Ag~~~~~~~~GSITal~~v~~~~-dD~s~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~~~~~~~~~a 387 (510)
T 2ck3_A 309 AAKMNDAFGGGSLTALPVIETQA-GDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVA 387 (510)
T ss_dssp CEEBCGGGTSCEEEEEEEEECST-TCTTSHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGGSCHHHHHHH
T ss_pred hhcccccCCCcceeEeeeeccCC-CCccccchHhhhcccceEEEEehhHhhCCCCCcccchhcccccccccCCHHHHHHH
Confidence 99985 689999999998874 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHHHH
Q psy3765 340 WVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMF 404 (592)
Q Consensus 340 ~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~ 404 (592)
+++|+.|++|+++++++++ | .++++.++..|+.....++|+.|+.|+ ..++.+|-.++
T Consensus 388 ~~lr~~la~y~el~~~~~~-G-~~l~~~~~~~l~~~~~i~~fL~Q~~~~-----~~~~~~~~~~l 445 (510)
T 2ck3_A 388 GTMKLELAQYREVAAFAQF-G-SDLDAATQQLLSRGVRLTELLKQGQYS-----PMAIEEQVAVI 445 (510)
T ss_dssp HHHHHHHHHHHHHGGGSSS-C-SSSCHHHHHHHHHHHHHHHTTCCCSSC-----CCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHh-c-CCCCHHHHHHHHHhHHHHHHhcCCCCC-----CCCHHHHHHHH
Confidence 9999999999999999987 5 578889999999655556699998876 44566665443
No 11
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=4.8e-80 Score=671.77 Aligned_cols=359 Identities=15% Similarity=0.157 Sum_probs=317.8
Q ss_pred EEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccC
Q psy3765 15 EVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDN 94 (592)
Q Consensus 15 e~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~ 94 (592)
.+-.|..+.+-..+..-+. ...-|.+ +++.+.+++|+.++|||+|+.| +|||+.+|.....+.+++.
T Consensus 65 ~l~~d~v~~~~~~~~~gi~--~G~~V~~-tg~~~~VpvG~~lLGRV~d~lG----------~PiDg~g~i~~~~~~pi~~ 131 (513)
T 3oaa_A 65 NLERDSVGAVVMGPYADLA--EGMKVKC-TGRILEVPVGRGLLGRVVNTLG----------APIDGKGPLDHDGFSAVEA 131 (513)
T ss_dssp EECSSCEEEEESSCCSSCC--TTCEEEC-CSCSSEEECSGGGTTCEEETTS----------CBTTCSCSCCCSCEEESSC
T ss_pred EeeCCEEEEEEeCCccCCC--CCCEEEE-cCCCCeEeeCHHHhccchhhcC----------cCccCCCCCCccceeeccc
Confidence 3334444444443323222 2334555 6899999999999999999999 5899998887777888987
Q ss_pred CCCCCcccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHH-HHHHHHHHhcCCCeEEEEEEeccchh
Q psy3765 95 LTPLHPKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIIL-QHIAHAITTNHSEAIMIVMLIDERPE 173 (592)
Q Consensus 95 l~pi~p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll-~~Ia~~i~~~~~~~~~I~~lIGeR~~ 173 (592)
.|++|.+|.++++ |++||||+||+|+|||||||++|||++|+|||+|+ .+|++ +++.++.|||++||||++
T Consensus 132 -~ap~~~~R~~v~e----pl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n---~~~~dv~~V~~~IGeR~~ 203 (513)
T 3oaa_A 132 -IAPGVIERQSVDQ----PVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIIN---QRDSGIKCIYVAIGQKAS 203 (513)
T ss_dssp -CCCCSSSCCCCCC----BCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHT---TSSSSCEEEEEEESCCHH
T ss_pred -CCCCccccCCcCc----ccccceeeeccccccccCCEEEeecCCCCCcchHHHHHHHh---hccCCceEEEEEecCChH
Confidence 4899999999998 89999999999999999999999999999999995 55554 577899999999999999
Q ss_pred HHHHHHhhc-------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-
Q psy3765 174 EVTEMQRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT- 245 (592)
Q Consensus 174 Ev~e~~~~~-------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~- 245 (592)
||++|++++ +|+||++|+|+||.+|+++|++|+|+||||||+|+||||++||+||||+||||||+++||+|+
T Consensus 204 ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r 283 (513)
T 3oaa_A 204 TISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGR 283 (513)
T ss_dssp HHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHHHHHHHHTTCCBCT
T ss_pred HHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHhcCCCCcc
Confidence 999999998 699999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCcccccchHHHhhcccc-------------cC-CcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhc
Q psy3765 246 GGVDSNALQRPKRFFGAARNI-------------EE-GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311 (592)
Q Consensus 246 ~Gyp~~l~~~~~~~~erA~~~-------------~~-~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~ 311 (592)
+||||++|+.+++|+|||+++ ++ +||||+|+|+++++ ||++|||++++++|+||||+|||+||++
T Consensus 284 ~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~~GSITal~~V~~~~-dD~s~pIp~~~~si~DGqIvLsr~La~~ 362 (513)
T 3oaa_A 284 EAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQA-GDVSAFVPTNVISITDGQIFLETNLFNA 362 (513)
T ss_dssp TSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSCCEEEEECCEEECGG-GCCSSHHHHHHHHHSSEEEEECHHHHTT
T ss_pred cCCCchhhhhcchHHHHHhhcccccchhccccccCCCCcceEEEEEEEcCC-CCccCcchHhhhccCCeEEEEehhHHhC
Confidence 799999999999999999997 24 89999999999874 7899999999999999999999999999
Q ss_pred CCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhccccccc
Q psy3765 312 RVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEV 391 (592)
Q Consensus 312 gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~I 391 (592)
||||||||+.|+||+++.++.++|+++++++|+.|++|++++++++++ .++++.++..|+.....++|+.|..|+
T Consensus 363 giyPAIdvl~SvSRv~~~~~~~~~~~va~~lr~~la~y~el~~~~~~g--~~ld~~~~~~l~~~~~i~~fL~Q~~~~--- 437 (513)
T 3oaa_A 363 GIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFA--SDLDDATRKQLDHGQKVTELLKQKQYA--- 437 (513)
T ss_dssp SCCSCBCTTTCEESSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTC--CSCCHHHHHHHHHHHHHHHHTCCCSSC---
T ss_pred CCCCccCccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHhCCCCCC---
Confidence 999999999999999999999999999999999999999999999985 578899999999555556899998865
Q ss_pred ccchhhhhHHH
Q psy3765 392 NSVKRLRKQEL 402 (592)
Q Consensus 392 d~~~~lkKqeL 402 (592)
..++..|-.
T Consensus 438 --~~~~~e~~~ 446 (513)
T 3oaa_A 438 --PMSVAQQSL 446 (513)
T ss_dssp --CCCTTHHHH
T ss_pred --CCCHHHHHH
Confidence 344455544
No 12
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=1.2e-79 Score=670.45 Aligned_cols=339 Identities=15% Similarity=0.149 Sum_probs=310.0
Q ss_pred CeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccccCCcccc
Q psy3765 37 DIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 37 dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
..-|.+ +++.+.+++|+.++|||+|+.| +|||+.+|.....+.+++. .|++|.+|.++++ |++|
T Consensus 86 G~~V~~-tg~~~~vpvG~~lLGRVvd~lG----------~PiDg~g~i~~~~~~pi~~-~~p~~~~R~~v~e----pl~T 149 (507)
T 1fx0_A 86 GSSVKA-TGRIAQIPVSEAYLGRVINALA----------KPIDGRGEITASESRLIES-PAPGIMSRRSVYE----PLQT 149 (507)
T ss_dssp TCEEEC-CCCCCEEEESSSCSSCCCCSSS----------CCSSSSCCCCCSEEEESSC-CCCCSSSBCCCCS----BCCC
T ss_pred CCEEEE-eCCcceeecCccceeEEEccCC----------cCCCCCCCCCCCceeeccC-CCCCcccccccCC----cccc
Confidence 344555 6899999999999999999999 5899998877667778887 5889999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHH-HHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEE
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIA 188 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~L-l~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~ 188 (592)
|||+||+|+|||||||++|||++|+|||+| +.+|+++ .++++.|||++||||++||++|++++ +|+||+
T Consensus 150 GiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~---~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~ 226 (507)
T 1fx0_A 150 GLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQ---QGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVA 226 (507)
T ss_dssp SCTTTTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC---CTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEE
T ss_pred cceecccccccccCCEEEEecCCCCCccHHHHHHHHHh---hcCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEE
Confidence 999999999999999999999999999999 5677664 45788899999999999999999998 589999
Q ss_pred eCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc
Q psy3765 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE 267 (592)
Q Consensus 189 ~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~ 267 (592)
+|+|+||.+|++++++|+|+||||||+|+|||+++||+||||+||||||+++||+|+ +||||++|+.+++|+|||++++
T Consensus 227 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~ 306 (507)
T 1fx0_A 227 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 306 (507)
T ss_dssp ECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999997 7999999999999999999985
Q ss_pred ---CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHH
Q psy3765 268 ---EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRK 344 (592)
Q Consensus 268 ---~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~ 344 (592)
++||||+|+|+++++ ||++|||++++++|+||||+|||+||++||||||||+.|+||+++.++.++|+++++++|+
T Consensus 307 ~~~~~GSITal~~v~~~~-~D~s~pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~lr~ 385 (507)
T 1fx0_A 307 SLLGEGSMTALPIVETQA-GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKL 385 (507)
T ss_dssp TTTTSCEEEECCEEECST-TCTTSHHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGGGGSCHHHHHHHHHHHH
T ss_pred ccCCCcceeeeeeeeccC-CCcccchHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccccCCCHHHHHHHHHHHH
Confidence 589999999999875 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccccccccchhhhhHHH
Q psy3765 345 LLYSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQEL 402 (592)
Q Consensus 345 ~l~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeL 402 (592)
.|++|+++++++++ | .++++.++..|+.....++|+.|+.|+ ..++.+|-.
T Consensus 386 ~la~y~el~~~~~~-G-~~l~~~~~~~l~~~~~i~~fL~Q~~~~-----~~~~~e~~~ 436 (507)
T 1fx0_A 386 ELAQFAELEAFAQF-A-SDLDKATQNQLARGQRLRELLKQPQSA-----PLTVEEQVM 436 (507)
T ss_dssp HHHHHHHHTTTGGG-C-SSCCHHHHHHHHHHHHHHHHHCCCTTC-----CCCHHHHHH
T ss_pred HHHhhhHHHHHHHh-c-cCCCHHHHHHHHHHHHHHHHHCCCCCC-----CCCHHHHHH
Confidence 99999999999997 5 578888999999666666699998876 334555443
No 13
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=1.5e-79 Score=675.27 Aligned_cols=301 Identities=20% Similarity=0.199 Sum_probs=280.0
Q ss_pred cccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhh
Q psy3765 102 KLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181 (592)
Q Consensus 102 ~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~ 181 (592)
+|.++++ |++||||+||+|+|||||||++|||++|+|||+|+++|+++ .+.++ |||++||||++||+||+++
T Consensus 208 ~R~~~~e----pl~TGirvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~---~~~~v-~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 208 QKLNPDV----PMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKW---SDVDL-VVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp EEECCCS----BCCCCCHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHH---SSCSE-EEEEEEEECHHHHHHHHHH
T ss_pred hccCCCc----eecccchhhhccCCccCCCEEeeecCCCccHHHHHHHHHhc---cCCCE-EEEEEecccHHHHHHHHHH
Confidence 4555555 89999999999999999999999999999999999999876 34564 8999999999999999988
Q ss_pred c--------------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-C
Q psy3765 182 V--------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-G 246 (592)
Q Consensus 182 ~--------------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~ 246 (592)
+ ||++|++|+|+||.+|++++++|+|+||||||+|+|||+++||+||||+|+||||+++||+|+ +
T Consensus 280 ~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~ 359 (600)
T 3vr4_A 280 FPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDE 359 (600)
T ss_dssp TTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGG
T ss_pred HHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhccCCCCccc
Confidence 5 589999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred CCCCcccccchHHHhhccccc------CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCC
Q psy3765 247 GVDSNALQRPKRFFGAARNIE------EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLN 320 (592)
Q Consensus 247 Gyp~~l~~~~~~~~erA~~~~------~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l 320 (592)
|||+|+++++++||||||+++ ++||||+|+|+++ ++||++|||++++++|+||||+|||+||++||||||||+
T Consensus 360 GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~-~gdD~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l 438 (600)
T 3vr4_A 360 GYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSP-SGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWI 438 (600)
T ss_dssp GCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEECC-SSSCTTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTT
T ss_pred cCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEEEC-CCCCCCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcc
Confidence 999999999999999999873 5899999998665 689999999999999999999999999999999999999
Q ss_pred CCCccccCC-------CCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhcccccccc
Q psy3765 321 KSGTRREEL-------LIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTIDLEVN 392 (592)
Q Consensus 321 ~S~SR~~~~-------~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~~~Id 392 (592)
.|+||+++. +++++|++.+++++++|++|+++++|++++|.++++++++..|+ .+.+.+.|++|+.|+ .+|
T Consensus 439 ~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~la~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~-~~d 517 (600)
T 3vr4_A 439 QSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFD-DVD 517 (600)
T ss_dssp TCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTS-TTT
T ss_pred cchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHhCCCCCcC-Ccc
Confidence 999999874 47899999999999999999999999999999999999999999 777778899999998 899
Q ss_pred cchhhhhHHHHHHHHHhhcc
Q psy3765 393 SVKRLRKQELMFAIFKKKTK 412 (592)
Q Consensus 393 ~~~~lkKqeLi~~Ilk~~~~ 412 (592)
.+|++.||..+++.+....+
T Consensus 518 ~~~~~~kq~~~l~~i~~~~~ 537 (600)
T 3vr4_A 518 TFTSREKQFNMLKVILTFGK 537 (600)
T ss_dssp TCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999999998888765443
No 14
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=1.1e-79 Score=674.22 Aligned_cols=301 Identities=19% Similarity=0.182 Sum_probs=280.8
Q ss_pred cccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhh
Q psy3765 102 KLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181 (592)
Q Consensus 102 ~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~ 181 (592)
+|.++++ |++||+|+||+|+|||||||++|||++|+|||+|+++|+++ .+.++ |||++||||++||+||+++
T Consensus 197 ~R~~~~e----pl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~---~~~~v-~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 197 RKLDPNT----PFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKW---SNADV-VVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp EEECSCS----EECCSCHHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHH---SSCSE-EEEEEEEECHHHHHHHHTT
T ss_pred HhccCCC----cccccchhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhc---cCCCE-EEEEEecccHHHHHHHHHH
Confidence 4555554 89999999999999999999999999999999999999876 34564 8999999999999999988
Q ss_pred c--------------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC-C
Q psy3765 182 V--------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT-G 246 (592)
Q Consensus 182 ~--------------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~ 246 (592)
+ +|++|++|+|+||.+|++++++|+|+||||||+|+|||+++||+||||+|+||||+++||+|+ +
T Consensus 269 ~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~ 348 (578)
T 3gqb_A 269 FPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEE 348 (578)
T ss_dssp GGGCBCTTTSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSS
T ss_pred HHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHhccCCCccc
Confidence 5 589999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred CCCCcccccchHHHhhccccc----CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCC
Q psy3765 247 GVDSNALQRPKRFFGAARNIE----EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKS 322 (592)
Q Consensus 247 Gyp~~l~~~~~~~~erA~~~~----~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S 322 (592)
|||+|+++++++||||||+++ ++||||+++|++++ +||++|||++++++|+||||+|||+||++||||||||+.|
T Consensus 349 GYp~~l~s~l~~l~ERAg~~~~~~~~~GSIT~i~~v~~~-gdD~tdPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S 427 (578)
T 3gqb_A 349 GYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPP-GGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGS 427 (578)
T ss_dssp SSCTTHHHHHHHHHTTCEEEECTTSCEEEEEEEEECCCT-TTCTTSHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTC
T ss_pred cCCchhhhHHHHHHHhhcCcccCCCCCcceEEEEEEEcC-CCCCCCcchHHHhhhcCceEEECHHHHhCCCCCCcCcccc
Confidence 999999999999999999985 68999999998765 8999999999999999999999999999999999999999
Q ss_pred CccccCC-------CCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhcccccccccc
Q psy3765 323 GTRREEL-------LIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTIDLEVNSV 394 (592)
Q Consensus 323 ~SR~~~~-------~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~~~Id~~ 394 (592)
+||+++. +++++|++.+++++++|++|+++++|++++|.++++++++..|+ .+.+.+.|++|+.|+ .+|.+
T Consensus 428 ~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~-~~d~~ 506 (578)
T 3gqb_A 428 YSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYH-EVDAY 506 (578)
T ss_dssp EESSHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTTTTTGGGCCHHHHHHHHHHHHHHHHHTCCCSSS-TTTTC
T ss_pred hhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhCCCCCCC-Cceec
Confidence 9999864 57999999999999999999999999999999999999999999 777778899999998 89999
Q ss_pred hhhhhHHHHHHHHHhhcc
Q psy3765 395 KRLRKQELMFAIFKKKTK 412 (592)
Q Consensus 395 ~~lkKqeLi~~Ilk~~~~ 412 (592)
|++.||..+++.+....+
T Consensus 507 ~~~~kq~~~l~~i~~~~~ 524 (578)
T 3gqb_A 507 SSMKKAYGIMKMILAFYK 524 (578)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999888765443
No 15
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=2.7e-80 Score=678.99 Aligned_cols=303 Identities=20% Similarity=0.181 Sum_probs=267.9
Q ss_pred cccccccccccCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHH
Q psy3765 100 PKKLLLLERNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQ 179 (592)
Q Consensus 100 p~~R~~ie~~ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~ 179 (592)
..+|.++++ |++||+|+||+|+|||||||++|||++|+|||+|+++|+++ .+.+ .|||++||||++||+||+
T Consensus 201 ~~~R~~~~e----pl~TGirvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~---~~~~-~~V~~~iGER~~Ev~e~~ 272 (588)
T 3mfy_A 201 YKEKLPPEV----PLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKW---SDAQ-VVIYIGCGERGNEMTDVL 272 (588)
T ss_dssp CSEEECSCS----EECCSCHHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHH---SSCS-EEEEEECCSSSSHHHHHH
T ss_pred hhhhccCCc----ccccCcchhhccCCcccCCeEEeecCCCCCHHHHHHHHHhc---cCCC-EEEEEEecccHHHHHHHH
Confidence 346777766 89999999999999999999999999999999999999875 3456 489999999999999999
Q ss_pred hhc--------------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCCC
Q psy3765 180 RSV--------------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245 (592)
Q Consensus 180 ~~~--------------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p~ 245 (592)
+++ +|++|++|+|+||.+|++++++|+|+||||||+|+|||+++||+||||+|+||||+++||+|+
T Consensus 273 ~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A~A~rEis~~lge~P~ 352 (588)
T 3mfy_A 273 EEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPG 352 (588)
T ss_dssp HHTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCCCCC------------
T ss_pred HHHHHhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHHHHHHHHHHhccCCCc
Confidence 985 589999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCCCcccccchHHHhhccccc------CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCc
Q psy3765 246 -GGVDSNALQRPKRFFGAARNIE------EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAIN 318 (592)
Q Consensus 246 -~Gyp~~l~~~~~~~~erA~~~~------~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID 318 (592)
+|||+|+++++++||||||+++ ++||||+|+|+++ ++||++|||++++++|+||||+|||+||++|||||||
T Consensus 353 ~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~-~gdD~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId 431 (588)
T 3mfy_A 353 EEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSP-PGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAIN 431 (588)
T ss_dssp ----CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEECCC-TTSCSSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBC
T ss_pred cccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEEEEC-CCCCCCCcchHHHHHhccCeeecCHHHHhCCCCCCcC
Confidence 7999999999999999999874 5899999998776 5899999999999999999999999999999999999
Q ss_pred CCCCCccccCC-------CCCHHHHHHHHHHHHHHhccccHHHHHhccccccCChhhhHHHh-hccchhHHHhhcccccc
Q psy3765 319 LNKSGTRREEL-------LIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIKRTIPVEKNLLK-DACMPLVLAETQTIDLE 390 (592)
Q Consensus 319 ~l~S~SR~~~~-------~~~~~~~~~~~~lr~~l~~~~~~~~li~l~g~~~~~~~~k~~L~-~~~i~e~~l~q~~f~~~ 390 (592)
|+.|+||+++. .++++|++.+++++++|++|++++++++++|.++++++++..|+ .+.+.+.|++|+.|+ .
T Consensus 432 ~l~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~~el~~ii~i~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~-~ 510 (588)
T 3mfy_A 432 WLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFD-E 510 (588)
T ss_dssp TTTCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHHHHHHHHHTTCCCTTS-T
T ss_pred cccchhhhcccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhcCCCCCC-C
Confidence 99999999975 47999999999999999999999999999999999999999999 777778999999998 8
Q ss_pred cccchhhhhHHHHHHHHHhhcc
Q psy3765 391 VNSVKRLRKQELMFAIFKKKTK 412 (592)
Q Consensus 391 Id~~~~lkKqeLi~~Ilk~~~~ 412 (592)
+|.+|++.||..+++.+....+
T Consensus 511 ~d~~~~~~k~~~~l~~i~~~~~ 532 (588)
T 3mfy_A 511 VDTYCPPEKQVTMMRVLLNFYD 532 (588)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999998888765443
No 16
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=1.2e-73 Score=620.99 Aligned_cols=349 Identities=16% Similarity=0.179 Sum_probs=315.2
Q ss_pred eeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccc-cCccccCCCCCCcccccccccccCCcccc
Q psy3765 38 IYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSK-NRTLFDNLTPLHPKKLLLLERNIESKENI 116 (592)
Q Consensus 38 vyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~-~r~~~d~l~pi~p~~R~~ie~~ap~~l~T 116 (592)
..|.+ +++.+.+++|+.++|||+|+.| +|+|+.+|.... .+++++.. |++|.+|.++.+ |++|
T Consensus 74 ~~V~~-tg~~~~vpvg~~llGrv~d~lG----------~piD~~g~i~~~~~~~pi~~~-~p~~~~r~~~~e----~l~T 137 (473)
T 1sky_E 74 MEVID-TGAPISVPVGQVTLGRVFNVLG----------EPIDLEGDIPADARRDPIHRP-APKFEELATEVE----ILET 137 (473)
T ss_dssp CEEEE-EEEECEEECSGGGTTCEECTTS----------CBCSSSCCCCTTSCEEESCCC-CCCGGGBCCSCC----EECC
T ss_pred CEEEE-cCCcceeeccccceeeEEeecC----------CccCcccccCCCceeeccccc-CcchhhhcccCc----cccc
Confidence 45555 6899999999999999999999 588998776665 67789884 889999999998 8999
Q ss_pred ccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------cEEEEEe
Q psy3765 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------RGEVIAS 189 (592)
Q Consensus 117 GiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~-------~~~vV~~ 189 (592)
|+|+||.|+|++||||++|||++|+|||+|+++|+.++++++.++ |||++||||++|+++|++++ +++||++
T Consensus 138 Gir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i-~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~ 216 (473)
T 1sky_E 138 GIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI-SVFAGVGERTREGNDLYHEMKDSGVISKTAMVFG 216 (473)
T ss_dssp SCHHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC-EEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEE
T ss_pred cchHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE-EEEeeeccCchHHHHHHHHhhhcCCcceeEEEEE
Confidence 999999999999999999999999999999999999988877776 68999999999999999876 7999999
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHH-cCCcEEEeccchhHHHHHHhhhccCCCCCCC-CCCCCcccccchHHHhhccccc
Q psy3765 190 TFDEPAYRHVQVAEMVLEKAKRLVE-MKKDVIILLDSITRLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARNIE 267 (592)
Q Consensus 190 t~d~~~~~r~~~~~~a~t~AE~~r~-~G~dVlll~Dsltr~A~A~reis~~~Ge~p~-~Gyp~~l~~~~~~~~erA~~~~ 267 (592)
++++||+.|++++++++++||||++ +|+||||++||+||||+||||+|+++||+|+ +||||++|+.+++|||||++ .
T Consensus 217 ~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~-~ 295 (473)
T 1sky_E 217 QMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITS-T 295 (473)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSC-B
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcC-C
Confidence 9999999999999999999999999 8999999999999999999999999999997 69999999999999999997 4
Q ss_pred CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccC-CCCCHHHHHHHHHHHHHH
Q psy3765 268 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREE-LLIQDDKLQKIWVLRKLL 346 (592)
Q Consensus 268 ~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~-~~~~~~~~~~~~~lr~~l 346 (592)
++||||+|+|++++ +||++|||++++++++||||+|||+||++||||||||+.|+||+++ .+++++|++.++++|++|
T Consensus 296 ~~GSIT~i~tv~~~-~dD~~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~~~~~~~~~a~~lr~~l 374 (473)
T 1sky_E 296 AKGSITSIQAIYVP-ADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGEEHYQVARKVQQTL 374 (473)
T ss_dssp SSCEEEEEEECCCS-TTCSSSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEec-CCCCCCcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhcCCHHHHHHHHHHHHHH
Confidence 78999999999987 5899999999999999999999999999999999999999999984 578899999999999999
Q ss_pred hccccHHHHHhccccccCChhhhHHHhhccchhHHHhhcccc-----cccccchhhhhHHHHHH
Q psy3765 347 YSLTMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQTID-----LEVNSVKRLRKQELMFA 405 (592)
Q Consensus 347 ~~~~~~~~li~l~g~~~~~~~~k~~L~~~~i~e~~l~q~~f~-----~~Id~~~~lkKqeLi~~ 405 (592)
++|+++++|++++||+++++.++..++.....+.|+.|+.|. -....+++++.+--.++
T Consensus 375 a~y~e~~~li~i~g~~~ls~~d~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~ 438 (473)
T 1sky_E 375 ERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFK 438 (473)
T ss_dssp HHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHH
T ss_pred HhHHHHHHHHHhhCcccCCHHHHHHHHHHHHHHHHHcCCchHhhhhhccCCccCCHHHHHHHHH
Confidence 999999999999999999999998998555556788887642 11234566665544433
No 17
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-58 Score=486.92 Aligned_cols=225 Identities=49% Similarity=0.839 Sum_probs=218.6
Q ss_pred hhhhHHHhhccchhHHHhhcccccccccchhhhhHHHHHHHHHhhccccceeeeceeeeeecCCeeEeeCCCCCCCCCCC
Q psy3765 366 PVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSD 445 (592)
Q Consensus 366 ~~~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~~~~~~~~~G~l~~~~~~~gflr~~~~~~~~~~~ 445 (592)
+-+.+.|+++.+.++...+++ ++++++++|+||||||+|+++++++++.++++|||||++|||||||++++||+|+++
T Consensus 7 ~~~~~~l~~~~~~~l~~~a~~--~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~g~le~~~~g~gflr~~~~~y~~~~~ 84 (427)
T 3l0o_A 7 TISISELESMNIKQLYEIAKS--LGIPRYTSMRKRDLIFAILKAQTESTGYFFGEGVLEIHPEGFGFLRRIEDNLLPSND 84 (427)
T ss_dssp SSTHHHHHHSCHHHHHHHHHH--TTCTTGGGSCHHHHHHHHHHGGGSSSSEEEEEEEEEECTTSCEEEECGGGTTCCCSS
T ss_pred CCCHHHHhcCCHHHHHHHHHH--cCCCCccccCHHHHHHHHHHHHHhhcCceeEEEEEEEcCCCceEeeCCccCCCCCCC
Confidence 456788999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCccccccCCCCCCCeeeeeecCCCCCCcccceeeeeEEe-------------------------------------
Q psy3765 446 DIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN------------------------------------- 488 (592)
Q Consensus 446 d~~v~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~v~~in------------------------------------- 488 (592)
|||||++|||+|+||+||.|.|.||+|+++|+|++|.+|.+||
T Consensus 85 d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~~~~r~~fe~l~Pi~P~~R~~le~e~~~tGir 164 (427)
T 3l0o_A 85 DIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDNLTPDYPRERFILETDPKIYSTR 164 (427)
T ss_dssp CEEECHHHHHHTTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC----CCCCGGGSCEECCCSBCCCCCSTTCHHHH
T ss_pred CeeeCHHHHHhcCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHHhccccccccCCCCCchhhccccccchhccch
Confidence 9999999999999999999999999999999999999999998
Q ss_pred ----------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCcEEEecCCCCcc---
Q psy3765 489 ----------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL--- 549 (592)
Q Consensus 489 ----------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~vv~st~D~~~~--- 549 (592)
|+|||+|||||+++||+++.+||+++++|+++||||+|||+||++++.|+||+||+|+||.
T Consensus 165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~ 244 (427)
T 3l0o_A 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQV 244 (427)
T ss_dssp HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHH
T ss_pred hhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999983
Q ss_pred ------------------------chHHHHHHHhhccCCCCCCcccCCcCccccCCcccccccccCC
Q psy3765 550 ------------------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 550 ------------------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg~ar~~ 592 (592)
|||||||+|||.+.+++||++|+|.|+++++.|++||++|||+
T Consensus 245 ~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s~Gypp~~~~~~~~~~erA~~i 311 (427)
T 3l0o_A 245 KVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTGGVDPAALYKPKRFFGAARNT 311 (427)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCCSCCCSSSCCSSCSHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCCCCcCchhhcchHHHHHhhccc
Confidence 9999999999999999999999999999999999999999974
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=1e-55 Score=465.11 Aligned_cols=333 Identities=23% Similarity=0.282 Sum_probs=301.8
Q ss_pred cccCCCCCeEEEEEECCCCCccccceeeeeecCCCC-ccccccCccccCCCCCCcccccccccccCCccccccceeeccc
Q psy3765 47 RFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEK-PELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRIIDLIA 125 (592)
Q Consensus 47 ~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~-p~~~~~r~~~d~l~pi~p~~R~~ie~~ap~~l~TGiraID~l~ 125 (592)
++.+++|+.++|||+|+.| +|+|+.+ |.....+.+++. .|+++.+|..+.. ++.||+++||.++
T Consensus 2 ~~~~~vg~~~lGrv~~~~g----------~p~d~~~~~~~~~~~~~i~~-~~~~~i~~~~l~~----~~~tg~~ald~ll 66 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIG----------RPMESNIVAPYLPFERSLYA-EPPDPLLRQVIDQ----PFILGVRAIDGLL 66 (347)
T ss_dssp CCEEEECGGGTTCEECTTS----------CBCSCCSSCCCCCEEEESCC-CCSCSTTCCCCCS----EECCSCHHHHHHS
T ss_pred CceeecCccccCCEECCCC----------CcCCCCCCCCCCCCcccccC-CCCCCeeecccce----ecCCCCEEEEeee
Confidence 5789999999999999999 5889987 666666778877 4788999999998 7889999999999
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc------cEEEEEeCCCCCHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV------RGEVIASTFDEPAYRHV 199 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~------~~~vV~~t~d~~~~~r~ 199 (592)
||++||+++|+|++|+|||||+++|+... ++++ .+|.++|+|++|+++++..+ +++++++++++|+..|+
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~---~~~~-g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~ 142 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGA---SADI-IVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERM 142 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHS---CCSE-EEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHH
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCC---CCCE-EEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHH
Confidence 99999999999999999999999999864 4564 57889999999999987653 57999999999999999
Q ss_pred HHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCC-CCCCCCcccccchHHHhhcccccCCcceeeEEEE
Q psy3765 200 QVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL-TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATA 278 (592)
Q Consensus 200 ~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p-~~Gyp~~l~~~~~~~~erA~~~~~~GSIT~i~tv 278 (592)
.+++.++++||||+++|+||++++|++++|++|+|+++++++++| ..|||+++++.+.++++++++. ++||||+++|+
T Consensus 143 ~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~-~~GsiT~~~tV 221 (347)
T 2obl_A 143 KAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPA-PKGSITAIYTV 221 (347)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEEC-SSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCC-CCCCeeeEEEE
Confidence 999999999999999999999999999999999999999999999 5899999999999999999863 57999999999
Q ss_pred EeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHHHHHHHHhccccHHHHHhc
Q psy3765 279 LIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSL 358 (592)
Q Consensus 279 lv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~~lr~~l~~~~~~~~li~l 358 (592)
++.+ +||++|++|++..+.||+|+||+.+++.++|||||++.|+||+++.+++++|++.++++|++|++|+++++++++
T Consensus 222 l~~t-hdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 300 (347)
T 2obl_A 222 LLES-DNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNPELLIRI 300 (347)
T ss_dssp ECCS-SCCCCHHHHHHHHHCSEEEEBCHHHHTTTCSSCBCGGGCEETTHHHHSCHHHHHHHHHHHHHHHHCCCTHHHHTT
T ss_pred EEeC-CCCCChhhhheEEeeCcEEEEeCCHHHcCCCCCcCccccccccccccCCHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 9886 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhh-hHHHhhccchhHHHhhcccccccccchhhhhHHHHHH
Q psy3765 359 FFIKRTIPVE-KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFA 405 (592)
Q Consensus 359 ~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~ 405 (592)
++|+++++.+ +..++.....+.|+.|+.++ ++++.++-.++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~fl~Q~~~~-----~~~~~~~~~~~~ 343 (347)
T 2obl_A 301 GEYTMGQDPEADKAIKNRKLIQNFIQQSTKD-----ISSYEKTIESLF 343 (347)
T ss_dssp TCCCCCSCHHHHHHHHTHHHHHHHHCCCTTC-----CCCHHHHHHHHH
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Confidence 9999988777 77777555567899987754 777888766554
No 19
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=2.7e-56 Score=473.78 Aligned_cols=223 Identities=61% Similarity=0.999 Sum_probs=200.0
Q ss_pred hhHHHhhccchhHHHhhcccccccccchhhhhHHHHHHHHHhhccccceeeeceeeeeecCCeeEeeCCCCCCCCCCCCc
Q psy3765 368 EKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447 (592)
Q Consensus 368 ~k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~~~~~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~ 447 (592)
+.+.|+++.+.|+...+++ ++++++++|+||||||+|+++++++++.++++|||||++|||||||++++||+|+++||
T Consensus 5 ~~~~l~~~~~~~l~~~a~~--~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~g~le~~~~g~gflr~~~~~~~~~~~d~ 82 (422)
T 3ice_A 5 NLTELKNTPVSELITLGEN--MGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 82 (422)
T ss_dssp CHHHHHHSCCC-------------------CHHHHHHHHHHHHHHTTCCCEEEEEEEECTTSCEEEECGGGTTCCCTTCE
T ss_pred CHHHHhCCCHHHHHHHHHH--cCCCCccccCHHHHHHHHHHHHHhcCCceEEEEEEEEcCCCceEeeCCCcCCCCCCCCe
Confidence 4678899999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccCCCCCCCeeeeeecCCCCCCcccceeeeeEEe---------------------------------------
Q psy3765 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN--------------------------------------- 488 (592)
Q Consensus 448 ~v~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~v~~in--------------------------------------- 488 (592)
||||+|||||+||+||.|.|.+|+|+++|||++|++|..+|
T Consensus 83 yvs~~~ir~~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~~pe~~~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGi 162 (422)
T 3ice_A 83 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA 162 (422)
T ss_dssp EBCHHHHHHHTCCTTCEEEEEEECCCSSCCSEEEEEEEEESSSCHHHHTTSCCTTTSCEESCCSBCCCCCTTCCTTHHHH
T ss_pred eeCHHHHHhcCCCCCCEEEEEEeCCCccchHHHHhccCcccCCChhhhcCCceeccccccCCCCccccccCCCCcccccc
Confidence 99999999999999999999999999999999999988887
Q ss_pred -----------------cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCcEEEecCCCCcc--
Q psy3765 489 -----------------VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAL-- 549 (592)
Q Consensus 489 -----------------~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~vv~st~D~~~~-- 549 (592)
|+|||+|||||+++||+.+.++|+++++|+++||||+|||+||+++++++||+||+|+||.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r 242 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRH 242 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999983
Q ss_pred -------------------------chHHHHHHHhhccCCCCCCcccCCcCccccCCcccccccccCC
Q psy3765 550 -------------------------SVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARKY 592 (592)
Q Consensus 550 -------------------------DSiTR~arA~n~~~~~~g~~lsgg~d~~al~~pk~~fg~ar~~ 592 (592)
|||||||+|||.+.+++|+++|+|.|+.+++.|+|||++|||+
T Consensus 243 ~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~erA~~~ 310 (422)
T 3ice_A 243 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNV 310 (422)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHHhcccc
Confidence 9999999999999999999999999999999999999999973
No 20
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=1.1e-47 Score=415.50 Aligned_cols=343 Identities=22% Similarity=0.251 Sum_probs=299.8
Q ss_pred CeeECccccc-------cccCCCCCeEEEEEECCCCCccccceeeeeecCCCCccccccCccccCCCCCCcccccccccc
Q psy3765 37 DIYLSPSQIR-------RFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERN 109 (592)
Q Consensus 37 dvyV~~~~~r-------~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~p~~~~~r~~~d~l~pi~p~~R~~ie~~ 109 (592)
...|.+ +++ .+.+++|+.++|||+|+.| .|+|+.++.....+.+++. .|+++.++..+..
T Consensus 73 g~~v~~-~~~~~~~~~~~~~v~~g~~~lgrv~~~lg----------~p~d~~~~~~~~~~~~i~~-~~~~~l~~~~v~~- 139 (438)
T 2dpy_A 73 GARVYA-RNGHGDGLQSGKQLPLGPALLGRVLDGGG----------KPLDGLPAPDTLETGALIT-PPFNPLQRTPIEH- 139 (438)
T ss_dssp TEEEEE-C----------CEEECSGGGTTEEECTTC----------CBSSSSCCCCCSCEEESCC-CCCCTTTSCCCCS-
T ss_pred CCEEEE-CCCccccccccEEEEcchhhhhhhhhccC----------CccCCCCCccccccccccC-CCCCceEEeccce-
Confidence 345555 678 9999999999999999999 4677776654445556765 4678889999987
Q ss_pred cCCccccccceeeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc-------
Q psy3765 110 IESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV------- 182 (592)
Q Consensus 110 ap~~l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~------- 182 (592)
++.||+++||.++||++||+++|+||+|+|||||+++|+... .++. .+|.++|+|++|++++.++.
T Consensus 140 ---~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~---~~~~-G~i~~~G~r~~ev~~~~~~~~~~~~l~ 212 (438)
T 2dpy_A 140 ---VLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT---RADV-IVVGLIGERGREVKDFIENILGPDGRA 212 (438)
T ss_dssp ---BCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS---CCSE-EEEEEESCCHHHHHHHHHTTTHHHHHH
T ss_pred ---ecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc---CCCe-EEEEEeceecHHHHHHHHhhccccccC
Confidence 788999999999999999999999999999999999999864 3554 57889999999999987542
Q ss_pred cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHHHhhhccCCCCCC-CCCCCCcccccchHHHh
Q psy3765 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL-TGGVDSNALQRPKRFFG 261 (592)
Q Consensus 183 ~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A~reis~~~Ge~p-~~Gyp~~l~~~~~~~~e 261 (592)
+++.+++++++++..++.+++.+++.||||++++++|+.++|+++||+.++|+++++++++| ..|||++.++.+.++++
T Consensus 213 r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~ 292 (438)
T 2dpy_A 213 RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVE 292 (438)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHT
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999 58999999999999999
Q ss_pred hccccc-CCcceeeEEEEEeecCCCCCcccccccccccCeEEEechHhHhcCCCCCCcCCCCCccccCCCCCHHHHHHHH
Q psy3765 262 AARNIE-EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIW 340 (592)
Q Consensus 262 rA~~~~-~~GSIT~i~tvlv~tg~d~~dpI~d~~~~i~dg~i~Ldr~La~~gifPAID~l~S~SR~~~~~~~~~~~~~~~ 340 (592)
++++.+ ++||||+++|+++.+ +|++++++|++..+.||+|++++.+++.++|||||++.|+||+++.+.+++|++.++
T Consensus 293 r~~~~~~~~GsiT~~~tVlv~t-Hdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~~~~~~~~~~~~~ 371 (438)
T 2dpy_A 293 RAGNGIHGGGSITAFYTVLTEG-DDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVR 371 (438)
T ss_dssp TCSCCSTTSCEEEEEEEEECSS-SCSCCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHHHHSCHHHHHHHH
T ss_pred HHHhccCCCCcccceeEEEEeC-CCccchhhceEEEEeCcEEEEeCCHHHccCCCCcCCcccccccccccCCHHHHHHHH
Confidence 998732 359999999999876 689999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHhccccHHHHHhccccccCChhh-hHHHhhccchhHHHhhcccccccccchhhhhHHHHHH
Q psy3765 341 VLRKLLYSLTMTSFTVSLFFIKRTIPVE-KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFA 405 (592)
Q Consensus 341 ~lr~~l~~~~~~~~li~l~g~~~~~~~~-k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~ 405 (592)
++++.|++|+++++++++++|+++++.+ +..+...-..+.|+.|+.++ ++++.++-.++.
T Consensus 372 ~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~fl~Q~~~~-----~~~~~~~~~~~~ 432 (438)
T 2dpy_A 372 LFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQGIFE-----RADWEDSLQALD 432 (438)
T ss_dssp HHHHHHHHHHHGGGTSSSSCCCTTSCHHHHHHHTTHHHHHHHHCCCTTC-----CCCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCCC-----CCCHHHHHHHHH
Confidence 9999999999999999999999888877 66666555667899987755 777877766544
No 21
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=99.95 E-value=4.9e-29 Score=228.86 Aligned_cols=124 Identities=52% Similarity=0.895 Sum_probs=116.7
Q ss_pred hHHHhhccchhHHHhhcccccccccchhhhhHHHHHHHHHhhccccceeeeceeeeeecCCeeEeeCCCCCCCCCCCCcc
Q psy3765 369 KNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448 (592)
Q Consensus 369 k~~L~~~~i~e~~l~q~~f~~~Id~~~~lkKqeLi~~Ilk~~~~~~~~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~ 448 (592)
-+.|+++.+.++...+.+ ++|+++++|+|++|+++|++++.++++.++++|+||+++|||||||++++||+|+++|||
T Consensus 3 ~~eLk~~~~~eL~eiAk~--LgI~~~s~mrKqeLI~~IL~~~~~~~~~~~~~Gvlei~~dG~GFlr~~~~~y~~~~~Diy 80 (130)
T 1a62_A 3 LTELKNTPVSELITLGEN--MGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80 (130)
T ss_dssp HHHHHTSCHHHHHHHHHT--TTCCCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEECGGGTTCCCTTCEE
T ss_pred hHHHhhCCHHHHHHHHHH--cCCCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEEEcCCCeEEEecCCcCCCCCCCCEE
Confidence 356788888888888888 799999999999999999999999999999999999999999999999889999999999
Q ss_pred cCccccccCCCCCCCeeeeeecCCCCCCcccceeeeeEEecCCCCC
Q psy3765 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494 (592)
Q Consensus 449 v~~~~i~~~~l~~gd~~~G~v~~~~~~~~~~~l~~v~~in~a~p~~ 494 (592)
||++|||+|+|++||.|.|+||+|+++|+|++|++|.+||.-+|-.
T Consensus 81 Vs~~~irrf~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~~pe~ 126 (130)
T 1a62_A 81 VSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN 126 (130)
T ss_dssp ECHHHHHHTTCCTTCEEEEEEECCCTTCCSEEEEEEEEETTBCCC-
T ss_pred ECHHHHhHhCCCCCCEEEEEEeCCCCCCcccceeEEEeECCCCHHH
Confidence 9999999999999999999999999999999999999999877754
No 22
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=99.85 E-value=5.3e-22 Score=182.16 Aligned_cols=86 Identities=69% Similarity=1.135 Sum_probs=79.5
Q ss_pred CCCceEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeECccccccccCCCCCeEEEEEECCCCCccccceeeeeecCCCC
Q psy3765 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFALLKIKKVNGEK 82 (592)
Q Consensus 3 ~~~~~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~~~~~r~~~L~vGd~l~GrV~~p~g~e~~~~l~~v~~ing~~ 82 (592)
++++.+.++|+||+++|||||||+.++||+++++|||||++|+|+|+|+.||.|.|+|+.|+++|+|++|++|+.|||.+
T Consensus 44 ~~~~~~~~~Gvlei~~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~~ 123 (130)
T 1a62_A 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123 (130)
T ss_dssp HTTCCEEEEEEEEECTTSCEEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEEEEECCCTTCCSEEEEEEEEETTBC
T ss_pred hcCCeEEEEEEEEEcCCCeEEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEEEEeCCCCCCcccceeEEEeECCCC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q psy3765 83 PELSKN 88 (592)
Q Consensus 83 p~~~~~ 88 (592)
|+.++.
T Consensus 124 pe~~~~ 129 (130)
T 1a62_A 124 PENARN 129 (130)
T ss_dssp CC----
T ss_pred HHHhhc
Confidence 987654
No 23
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=99.79 E-value=1.4e-20 Score=204.77 Aligned_cols=100 Identities=12% Similarity=0.240 Sum_probs=84.3
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhc-------------CCcEEEecCCCCcc------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV-------------RGEVIASTFDEPAL------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~-------------~~~vv~st~D~~~~------ 549 (592)
|+++|+||||||+||+++++++|+++. |+++||||+|||+||+++. ...||++|+|+||.
T Consensus 159 fgg~G~GKT~L~~~i~~~~~~~~~~v~-V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~ 237 (482)
T 2ck3_D 159 FGGAGVGKTVLIMELINNVAKAHGGYS-VFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA 237 (482)
T ss_dssp EECTTSSHHHHHHHHHHHTTTTCSSEE-EEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHH
T ss_pred ecCCCCChHHHHHHHHHhhHhhCCCEE-EEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHH
Confidence 999999999999999999999998874 5579999999999999887 33489999999983
Q ss_pred ----------------------chHHHHHHHhhccCCCCCCcccC-CcCccccCCcccccccc
Q psy3765 550 ----------------------SVMCKLARAYNTVIPASGKVLTG-GVDSNALQRPKRFFGAA 589 (592)
Q Consensus 550 ----------------------DSiTR~arA~n~~~~~~g~~lsg-g~d~~al~~pk~~fg~a 589 (592)
|||||||+|||++.+.+|+..|+ |--+.......+|+..|
T Consensus 238 ~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERa 300 (482)
T 2ck3_D 238 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 300 (482)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhh
Confidence 99999999999999999999998 65555444444454433
No 24
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=99.79 E-value=1e-20 Score=206.54 Aligned_cols=102 Identities=13% Similarity=0.223 Sum_probs=93.0
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcC--------------CcEEEecCCCCcc-----
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR--------------GEVIASTFDEPAL----- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~--------------~~vv~st~D~~~~----- 549 (592)
|+++|+|||+|++||+++++++|+++. |+++||||+|||+||+++.+ ..||++|+|+||.
T Consensus 171 fgg~GvGKT~L~~~l~~~~a~~~~~v~-V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~ 249 (498)
T 1fx0_B 171 FGGAGVGKTVLIMELINNIAKAHGGVS-VFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRV 249 (498)
T ss_dssp EECSSSSHHHHHHHHHHHTTTTCSSCE-EEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTH
T ss_pred ecCCCCCchHHHHHHHHHHHhhCCCEE-EEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 999999999999999999999998865 45599999999999999883 3489999999983
Q ss_pred -----------------------chHHHHHHHhhccCCCCCCcccC-CcCccccCCcccccccccC
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGKVLTG-GVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~~lsg-g~d~~al~~pk~~fg~ar~ 591 (592)
|||||||+|||++....|+..|. |..+.......+|+..|.|
T Consensus 250 ~~~altiAEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~ 315 (498)
T 1fx0_B 250 GLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS 315 (498)
T ss_dssp HHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccC
Confidence 99999999999999999999998 9999999999999988865
No 25
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=99.79 E-value=1.1e-20 Score=205.41 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=94.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCc--eeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc----------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSE--AIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL---------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~--~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~---------- 549 (592)
|+++|+|||+||+|||++...|+++ ..+|+++||||+|||+||+++.+++ ||++|+|+||.
T Consensus 158 fgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~ 237 (469)
T 2c61_A 158 FSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMAL 237 (469)
T ss_dssp EECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999999999999888763 4567779999999999999999763 99999999983
Q ss_pred ------------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 ------------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ------------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||++....|+..+ .|..+...+...+|+..|+|
T Consensus 238 tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~ 298 (469)
T 2c61_A 238 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGI 298 (469)
T ss_dssp HHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccc
Confidence 9999999999999999999999 99999999999999999976
No 26
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=99.77 E-value=2.3e-20 Score=204.29 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=94.8
Q ss_pred cCCCCCcHHHH-HHHHHHHHhc-----CCCceeEEEEEEeCCchhhHHHHHhcCC-------cEEEecCCCCcc------
Q psy3765 489 VASPKSGKSII-LQHIAHAITT-----NHSEAIMIVMLIDERPEEVTEMQRSVRG-------EVIASTFDEPAL------ 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~-----~~~~~~~~v~Li~ER~eEV~d~~~~~~~-------~vv~st~D~~~~------ 549 (592)
|+++|+|||+| |.||+|+... ||+++.+|+++||||+|||+||+++.++ .||+||+|+||.
T Consensus 168 ~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 247 (510)
T 2ck3_A 168 IGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAP 247 (510)
T ss_dssp EESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHH
T ss_pred ecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHH
Confidence 99999999999 9999999984 6788888999999999999999999975 399999999983
Q ss_pred ---------------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 ---------------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ---------------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||.+....|+.-+ .|..+..++.+.||+..|+|
T Consensus 248 ~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~ 311 (510)
T 2ck3_A 248 YSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK 311 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhc
Confidence 9999999999999999999888 88999999999999998876
No 27
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=99.77 E-value=2.4e-20 Score=204.01 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=90.9
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+|||+| |.||+|+. ++++.+|+++||||+|||+||+++.+++ ||+||+|+||.
T Consensus 181 ~g~~g~GKT~Lal~~I~~~~---~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~t 257 (515)
T 2r9v_A 181 IGDRQTGKTAIAIDTIINQK---GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCA 257 (515)
T ss_dssp EEETTSSHHHHHHHHHHTTT---TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EcCCCCCccHHHHHHHHHhh---cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999 89999965 3556668889999999999999999753 99999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||.+.+..||..+ .|..+..++.+.||+..|.|
T Consensus 258 iAEyfrd~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~ 316 (515)
T 2r9v_A 258 MGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVR 316 (515)
T ss_dssp HHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhh
Confidence 9999999999999999999998 89999999999999998876
No 28
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=99.75 E-value=5e-20 Score=199.51 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=92.9
Q ss_pred cCCCCCcHHHHHHHHHHHHhc--CCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc----------
Q psy3765 489 VASPKSGKSIILQHIAHAITT--NHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL---------- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~--~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~---------- 549 (592)
|+++|+|||||++|||++..+ +|+++.+|+++||||+|||+||+++..++ ||++|+|+||.
T Consensus 157 fgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~ 236 (465)
T 3vr4_D 157 FSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMAL 236 (465)
T ss_dssp EECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHH
T ss_pred eCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999999887 68899999999999999999999987542 99999999983
Q ss_pred ------------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 ------------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ------------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||++....|+.-+ .|--+...+...+|+..|.|
T Consensus 237 tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~ 297 (465)
T 3vr4_D 237 TAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGR 297 (465)
T ss_dssp HHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEE
T ss_pred HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhc
Confidence 9999999999999999999987 78888888888888877754
No 29
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=99.75 E-value=9.3e-20 Score=197.38 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=93.9
Q ss_pred cCCCCCcHHHHHHHHHHHHhcC---------CCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc---
Q psy3765 489 VASPKSGKSIILQHIAHAITTN---------HSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL--- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~---------~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~--- 549 (592)
|+++|+|||+|++|||++..+| |+++.+|+++||||+|||+||+++..++ ||++|+|+||.
T Consensus 153 fgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~ 232 (464)
T 3gqb_B 153 FSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERI 232 (464)
T ss_dssp EEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHH
T ss_pred ecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHH
Confidence 9999999999999999998874 8898999999999999999999987542 99999999983
Q ss_pred -------------------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 -------------------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 -------------------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||++....|+.-+ .|..+...+...+|+..|+|
T Consensus 233 ~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~ 300 (464)
T 3gqb_B 233 LTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGV 300 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBC
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcc
Confidence 9999999999999999999988 88888888888889888876
No 30
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=99.75 E-value=1.5e-19 Score=197.48 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=89.4
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCC-------cEEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG-------EVIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~-------~vv~st~D~~~~----------- 549 (592)
|+++|+|||+| |.||+|+. ++++.+|+++||||+|||+||+++.++ .||++|+|+||.
T Consensus 168 fg~~g~GKT~Lal~~I~~~~---~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~t 244 (502)
T 2qe7_A 168 IGDRQTGKTTIAIDTIINQK---GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCA 244 (502)
T ss_dssp EECSSSCHHHHHHHHHHGGG---SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ECCCCCCchHHHHHHHHHhh---cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999 89999965 356666888999999999999999975 399999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||.+....|+.-+ .|..+..++.+.||+..|.|
T Consensus 245 iAEyfrd~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~ 303 (502)
T 2qe7_A 245 MGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAK 303 (502)
T ss_dssp HHHHHHTTTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCB
T ss_pred HHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhc
Confidence 9999999999999999998887 68888888889999998876
No 31
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=99.74 E-value=3.7e-19 Score=194.68 Aligned_cols=100 Identities=19% Similarity=0.279 Sum_probs=86.5
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~----------- 549 (592)
|+++|+|||+| |.||+|+. ++++.+|+++||||+|||+||+++.+++ ||+||+|+||.
T Consensus 169 fg~~g~GKT~Lal~~I~~~~---~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~t 245 (507)
T 1fx0_A 169 IGDRQTGKTAVATDTILNQQ---GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAA 245 (507)
T ss_dssp EESSSSSHHHHHHHHHHTCC---TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHH
T ss_pred ecCCCCCccHHHHHHHHHhh---cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999 89999954 2556678889999999999999999873 99999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||.+.+..||..+ .|..+...+-..|++..|.|
T Consensus 246 iAEyfrd~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~ 304 (507)
T 1fx0_A 246 LAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK 304 (507)
T ss_dssp HHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCB
T ss_pred HHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhh
Confidence 9999999999999999999988 57777666666777776655
No 32
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=99.66 E-value=5.5e-18 Score=185.02 Aligned_cols=99 Identities=17% Similarity=0.247 Sum_probs=80.8
Q ss_pred cCCCCCcHHHH-HHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCC-------cEEEecCCCCcc-----------
Q psy3765 489 VASPKSGKSII-LQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG-------EVIASTFDEPAL----------- 549 (592)
Q Consensus 489 ~a~p~~GKttl-l~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~-------~vv~st~D~~~~----------- 549 (592)
|+++|+|||+| |.+|+|+ .++++.+|+++||||++||+||+++..+ .||++|+|+||.
T Consensus 168 fg~~g~GKT~l~l~~I~n~---~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~t 244 (513)
T 3oaa_A 168 IGDRQTGKTALAIDAIINQ---RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCA 244 (513)
T ss_dssp EESSSSSHHHHHHHHHHTT---SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ecCCCCCcchHHHHHHHhh---ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHH
Confidence 99999999999 7999984 4556667888999999999999999753 299999999983
Q ss_pred ----------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCccccccccc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAAR 590 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar 590 (592)
||+||||+|||.+....||.-+ .|-.+...+-..|++..|.
T Consensus 245 iAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg 302 (513)
T 3oaa_A 245 MGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAA 302 (513)
T ss_dssp HHHHHHHTTCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCS
T ss_pred HHHHHHhcCCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHh
Confidence 9999999999999999998886 4655544444455555444
No 33
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=99.58 E-value=2.4e-16 Score=173.67 Aligned_cols=98 Identities=24% Similarity=0.257 Sum_probs=85.5
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeE-EEEEEeCCchhhHHHHHhc-------CCc-------EEEecCCCCcc----
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIM-IVMLIDERPEEVTEMQRSV-------RGE-------VIASTFDEPAL---- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~-~v~Li~ER~eEV~d~~~~~-------~~~-------vv~st~D~~~~---- 549 (592)
|+++|+|||+|+++||++ .++++ |+++||||++||+||+++. .|+ ||++|+|+||.
T Consensus 227 fg~~g~GKT~l~~~ia~~-----~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R~~ 301 (578)
T 3gqb_A 227 PGPFGSGKSVTQQSLAKW-----SNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREA 301 (578)
T ss_dssp CCCTTSCHHHHHHHHHHH-----SSCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCHHHHHH
T ss_pred eCCCCccHHHHHHHHHhc-----cCCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHH
Confidence 999999999999999994 44455 5569999999999999884 442 99999999983
Q ss_pred -----------------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||++....|+.-+ .|-.+.....+.+|+..|+|
T Consensus 302 ~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~ 367 (578)
T 3gqb_A 302 SIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGK 367 (578)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcC
Confidence 9999999999999999999988 68888777788899998865
No 34
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=99.53 E-value=5.8e-16 Score=170.70 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=71.5
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEE-EEEEeCCchhhHHHHHhc-------CC-------cEEEecCCCCcc----
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMI-VMLIDERPEEVTEMQRSV-------RG-------EVIASTFDEPAL---- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~-v~Li~ER~eEV~d~~~~~-------~~-------~vv~st~D~~~~---- 549 (592)
|+++|+|||+|+++||+ +++++++ +++||||+|||+||+++. .| .||++|+|+||.
T Consensus 233 ~g~~g~GKT~L~~~ia~-----~~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~ 307 (588)
T 3mfy_A 233 PGPAGSGKTVTQHQLAK-----WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREA 307 (588)
T ss_dssp CSCCSHHHHHHHHHHHH-----HSSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh-----ccCCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCCHHHHHH
Confidence 99999999999999999 4556664 469999999999999995 34 299999999983
Q ss_pred -----------------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||.+....|+.-+ .|-.+.....+.+||..|+|
T Consensus 308 ~~~~a~tiAEyfrd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~ 373 (588)
T 3mfy_A 308 SIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGR 373 (588)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECTTTCCCCC----------------CCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEeecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhcccc
Confidence 9999999999999999999886 67777777778899998865
No 35
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=99.52 E-value=1.4e-15 Score=168.33 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=80.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEE-EEEeCCchhhHHHHHhc-------CCc-------EEEecCCCCcc----
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIV-MLIDERPEEVTEMQRSV-------RGE-------VIASTFDEPAL---- 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v-~Li~ER~eEV~d~~~~~-------~~~-------vv~st~D~~~~---- 549 (592)
|+++|+|||+|+++||+ +.+++++| ++||||++||+||+++. .|+ ||++|+|+||.
T Consensus 238 fgg~g~GKT~L~~~ia~-----~~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~ 312 (600)
T 3vr4_A 238 PGPFGAGKTVVQHQIAK-----WSDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREA 312 (600)
T ss_dssp ECCTTSCHHHHHHHHHH-----HSSCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHH
T ss_pred ecCCCccHHHHHHHHHh-----ccCCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHH
Confidence 99999999999999999 44556644 59999999999999884 442 99999999983
Q ss_pred -----------------------chHHHHHHHhhccCCCCCCccc-CCcCccccCCcccccccccC
Q psy3765 550 -----------------------SVMCKLARAYNTVIPASGKVLT-GGVDSNALQRPKRFFGAARK 591 (592)
Q Consensus 550 -----------------------DSiTR~arA~n~~~~~~g~~ls-gg~d~~al~~pk~~fg~ar~ 591 (592)
||+||||+|||++....|+.-+ .|--+.......+|+..|+|
T Consensus 313 ~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~ 378 (600)
T 3vr4_A 313 SIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGR 378 (600)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhcc
Confidence 9999999999999988898876 45555444456788888754
No 36
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=99.48 E-value=3.7e-15 Score=162.40 Aligned_cols=83 Identities=17% Similarity=0.347 Sum_probs=74.3
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcC-------CcEEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR-------GEVIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~-------~~vv~st~D~~~~------------ 549 (592)
|+|||+|||||+++|++.+..++.++. +.++||||++||+||+++.. ..||++|+|+||.
T Consensus 157 ~G~sGvGKTtL~~~l~~~~~~~~~~i~-V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~lti 235 (473)
T 1sky_E 157 FGGAGVGKTVLIQELIHNIAQEHGGIS-VFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTM 235 (473)
T ss_dssp ECCSSSCHHHHHHHHHHHHHHHTCCCE-EEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ECCCCCCccHHHHHHHhhhhhccCcEE-EEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988877765 45699999999999998663 2399999999982
Q ss_pred ----------------chHHHHHHHhhccCCCCCCcccC
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKVLTG 572 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~lsg 572 (592)
|||||||+|||.+.+.+|+..|.
T Consensus 236 AEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~ 274 (473)
T 1sky_E 236 AEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSA 274 (473)
T ss_dssp HHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCG
T ss_pred HHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCcc
Confidence 99999999999999999999886
No 37
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.25 E-value=6.4e-13 Score=139.69 Aligned_cols=97 Identities=29% Similarity=0.388 Sum_probs=81.8
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCCc-------EEEecCCCCcc------------
Q psy3765 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIASTFDEPAL------------ 549 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~~-------vv~st~D~~~~------------ 549 (592)
|+|+||||||||++|++.+ .|++ .+|.++|||++||++|++. +++ ++++++|+|+.
T Consensus 77 iG~nGaGKTTLl~~I~g~~---~~~~-g~i~~~G~~~~ev~~~i~~-~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ 151 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGA---SADI-IVLALIGERGREVNEFLAL-LPQSTLSKCVLVVTTSDRPALERMKAAFTATTI 151 (347)
T ss_dssp EECTTSSHHHHHHHHHHHS---CCSE-EEEEEESCCHHHHHHHHTT-SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcCC---CCCE-EEEEEecccHHHHHHHHHh-hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999975 3443 4667899999999999877 442 88899998862
Q ss_pred ---------------chHHHHHHHhhccCCCCCCcc-cCCcCccccCCccccccccc
Q psy3765 550 ---------------SVMCKLARAYNTVIPASGKVL-TGGVDSNALQRPKRFFGAAR 590 (592)
Q Consensus 550 ---------------DSiTR~arA~n~~~~~~g~~l-sgg~d~~al~~pk~~fg~ar 590 (592)
|++|||++|++.+..+.|+.- +.|+|+...+...+|+..++
T Consensus 152 ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~ 208 (347)
T 2obl_A 152 AEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAG 208 (347)
T ss_dssp HHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCE
T ss_pred HHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHh
Confidence 899999999998877777776 69999999999888888775
No 38
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.64 E-value=1.2e-08 Score=110.51 Aligned_cols=99 Identities=26% Similarity=0.354 Sum_probs=75.8
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHHhcCC------c-EEEecCCCCcc-----------
Q psy3765 488 NVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG------E-VIASTFDEPAL----------- 549 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~~~~~------~-vv~st~D~~~~----------- 549 (592)
.|+|+||||||||++|++.+. |+ ..+|.++|||++||++|.++..+ . ++++++|.++.
T Consensus 162 IvG~sGsGKSTLl~~Iag~~~---~~-~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 162 LFAGSGVGKSVLLGMMARYTR---AD-VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp EEECTTSSHHHHHHHHHHHSC---CS-EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhcccC---CC-eEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 389999999999999999652 33 34677999999999999865432 1 67778777752
Q ss_pred ----------------chHHHHHHHhhccCCCCCCc-ccCCcCccccCCccccccccc
Q psy3765 550 ----------------SVMCKLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAAR 590 (592)
Q Consensus 550 ----------------DSiTR~arA~n~~~~~~g~~-lsgg~d~~al~~pk~~fg~ar 590 (592)
|++|||+.|++.+..+.++. ++.|+|+...+...+++..++
T Consensus 238 ~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~ 295 (438)
T 2dpy_A 238 IAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG 295 (438)
T ss_dssp HHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCS
T ss_pred HHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHH
Confidence 89999999997765444443 289999998877777776554
No 39
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.16 E-value=6.8e-06 Score=79.21 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=53.7
Q ss_pred cccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhh
Q psy3765 114 ENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181 (592)
Q Consensus 114 l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~ 181 (592)
+.||+..+|-++. +-+|+-..|.|+||+|||+++.+++.+...++.. .++|+...+.++++.+-...
T Consensus 12 i~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~-~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 12 VKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE-PGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp ECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC-CEEEEESSSCHHHHHHHHHT
T ss_pred ecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC-CceeecccCCHHHHHHHHHH
Confidence 7899999999997 7799999999999999999999988664433233 36788888888877665443
No 40
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.79 E-value=4.1e-05 Score=80.04 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=73.2
Q ss_pred ccccccceeecccc------ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----
Q psy3765 113 KENITGRIIDLIAP------IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV---- 182 (592)
Q Consensus 113 ~l~TGiraID~l~P------igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~---- 182 (592)
.+.||+..+|.++. +-+| +..|+|+||+|||+|+.+++....+++++-.|+|+-.-+..+.. ..+.+
T Consensus 6 risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--ra~~lGvd~ 82 (333)
T 3io5_A 6 VVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--YLRSMGVDP 82 (333)
T ss_dssp CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--HHHHTTCCG
T ss_pred EecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--HHHHhCCCH
Confidence 47899999999988 6689 99999999999999999998887766556678887655544332 22333
Q ss_pred cEEEEEeCCCCCHHHHHHHHHhHHHHHHHH--HHcCCcEEEeccchhHHH
Q psy3765 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRL--VEMKKDVIILLDSITRLA 230 (592)
Q Consensus 183 ~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~--r~~G~dVlll~Dsltr~A 230 (592)
.-.+++...+ .++. ++.+++.+ .+.+.--+|++||++-+.
T Consensus 83 d~llv~~~~~---~E~~-----~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ERVIHTPVQS---LEQL-----RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp GGEEEEECSB---HHHH-----HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHeEEEcCCC---HHHH-----HHHHHHHHHHhhccCceEEEEecccccc
Confidence 2344443321 1221 14445554 345777899999998764
No 41
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.73 E-value=6.6e-05 Score=71.07 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=66.6
Q ss_pred cccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc--chhHHHHHHhhcc------
Q psy3765 114 ENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE--RPEEVTEMQRSVR------ 183 (592)
Q Consensus 114 l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe--R~~Ev~e~~~~~~------ 183 (592)
+.||+..+|-++. +-+|+-.+|.|++|+|||+|+.+|+. . . +-.++|+...+ ..+.+.++.+.+.
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-S--GKKVAYVDTEGGFSPERLVQMAETRGLNPEEA 76 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-H--CSEEEEEESSCCCCHHHHHHHHHTTTCCHHHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-c--CCcEEEEECCCCCCHHHHHHHHHhcCCChHHH
Confidence 5799999999986 88999999999999999999999987 2 2 33567776655 5555555444321
Q ss_pred --EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 184 --GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 184 --~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
-..+...++.. +. ...++.++.+... .--+|++|+++.+-
T Consensus 77 ~~~~~~~~~~~~~---~~---~~~~~~~~~l~~~-~~~lliiD~~~~~l 118 (220)
T 2cvh_A 77 LSRFILFTPSDFK---EQ---RRVIGSLKKTVDS-NFALVVVDSITAHY 118 (220)
T ss_dssp HHHEEEECCTTTS---HH---HHHHHHHHHHCCT-TEEEEEEECCCCCT
T ss_pred hhcEEEEecCCHH---HH---HHHHHHHHHHhhc-CCCEEEEcCcHHHh
Confidence 12233222211 11 1123344444433 34478889887654
No 42
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.63 E-value=0.00017 Score=69.23 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=67.9
Q ss_pred ccccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHHhcC----CCeEEEEEEecc--chhHHHHHHhhcc-
Q psy3765 113 KENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAITTNH----SEAIMIVMLIDE--RPEEVTEMQRSVR- 183 (592)
Q Consensus 113 ~l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~----~~~~~I~~lIGe--R~~Ev~e~~~~~~- 183 (592)
.+.||+..+|-++ -+-+|+-.+|+|++|+|||+|+.+|+..+.... .+-.++|+...+ ..+.+.++.+.+.
T Consensus 5 ~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 84 (243)
T 1n0w_A 5 QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL 84 (243)
T ss_dssp EECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred EecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCC
Confidence 4789999999998 477999999999999999999999987543211 133566665443 2444555544331
Q ss_pred -------EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 184 -------GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 184 -------~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
-..+....+ ....... +...+.+.+...--+|++|+++.+-
T Consensus 85 ~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 85 SGSDVLDNVAYARAFN--TDHQTQL----LYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp CHHHHHHTEEEEECCS--HHHHHHH----HHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred CHHHHhhCeEEEecCC--HHHHHHH----HHHHHHHHhcCCceEEEEeCchHHH
Confidence 122332222 2222111 2223333333455577889998764
No 43
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.48 E-value=0.00044 Score=71.11 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=75.1
Q ss_pred ccccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHHhcC----CCeEEEEEEeccc--hhHHHHHHhhcc-
Q psy3765 113 KENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAITTNH----SEAIMIVMLIDER--PEEVTEMQRSVR- 183 (592)
Q Consensus 113 ~l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~----~~~~~I~~lIGeR--~~Ev~e~~~~~~- 183 (592)
.+.||+..+|.++ -+-+|+-+.|+|+||+|||+|+.+++..+...+ .+-.++|+...+. ++.+.++.+.+.
T Consensus 88 ~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 88 KISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp EECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred cccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5889999999998 466899999999999999999999987654321 1346778766553 666666655441
Q ss_pred -------EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHc-CCcEEEeccchhHHHHH
Q psy3765 184 -------GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEM-KKDVIILLDSITRLARA 232 (592)
Q Consensus 184 -------~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~-G~dVlll~Dsltr~A~A 232 (592)
-..+....+ ..... ..+..++.+..+ +.--+|++||++.+.++
T Consensus 168 ~~~~~~~~l~~~~~~~--~~~~~----~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 168 DIDNVMNNIYYIRAIN--TDHQI----AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp CHHHHHHTEEEEECCS--HHHHH----HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CHHHHhccEEEEeCCC--HHHHH----HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 123333222 12111 123344444433 55568899999999865
No 44
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.44 E-value=0.00051 Score=71.44 Aligned_cols=114 Identities=12% Similarity=0.180 Sum_probs=73.0
Q ss_pred ccccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHHhcC----CCeEEEEEEecc--chhHHHHHHhhc--
Q psy3765 113 KENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAITTNH----SEAIMIVMLIDE--RPEEVTEMQRSV-- 182 (592)
Q Consensus 113 ~l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~----~~~~~I~~lIGe--R~~Ev~e~~~~~-- 182 (592)
.+.||+..+|.++ -+-+|+-+.|+|++|+|||+|+.+++..+.... .+-.++|+..-. +++.+.++.+.+
T Consensus 103 ~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~ 182 (343)
T 1v5w_A 103 HITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV 182 (343)
T ss_dssp CBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred eeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 5899999999998 466899999999999999999999987644311 234677876655 356666655443
Q ss_pred ------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHc--CCcEEEeccchhHHHHH
Q psy3765 183 ------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEM--KKDVIILLDSITRLARA 232 (592)
Q Consensus 183 ------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~--G~dVlll~Dsltr~A~A 232 (592)
+-..+....+-. +... .+..++.+... +.--+|++||++.+.++
T Consensus 183 ~~~~~l~~l~~~~~~~~e--~~~~----ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 183 DHDAVLDNVLYARAYTSE--HQME----LLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp CHHHHHHTEEEEECCSTT--HHHH----HHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHhceeEeecCCHH--HHHH----HHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 112333322211 1111 12233333333 45558899999998865
No 45
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.42 E-value=0.00026 Score=74.21 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=69.6
Q ss_pred ccccccceeecccc---ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAP---IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~P---igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|.++. +-+|.-++|.|++|+|||+|+.+++..+.+.. -.++|+...+..+.. ..+.+ ...
T Consensus 41 ~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~--~a~~lG~~~~~l 116 (349)
T 2zr9_A 41 VIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE--YAKKLGVDTDSL 116 (349)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH--HHHHTTCCGGGC
T ss_pred ccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH--HHHHcCCCHHHe
Confidence 48999999999987 34899999999999999999999998777643 246676655433332 12222 122
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
.+.... + . ...+.+++.+...+.--+|++||++.+.
T Consensus 117 ~i~~~~--~-~------e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 117 LVSQPD--T-G------EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp EEECCS--S-H------HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred EEecCC--C-H------HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 333221 1 2 2234566766655555578889998765
No 46
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.38 E-value=0.00021 Score=67.70 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=51.8
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHh
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~ 180 (592)
.+.||++.+|-++. +-+|+-++|.|++|+|||||+.+|+..+..... .++|+......+++.+...
T Consensus 4 ~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~--~v~~~~~~~~~~~~~~~~~ 71 (235)
T 2w0m_A 4 RLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD--PCIYVTTEESRDSIIRQAK 71 (235)
T ss_dssp EECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC--CEEEEESSSCHHHHHHHHH
T ss_pred cccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC--eEEEEEcccCHHHHHHHHH
Confidence 36799999999985 889999999999999999999999977665433 3567776666666555443
No 47
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.37 E-value=0.0003 Score=74.16 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=68.5
Q ss_pred ccccccceeecccc---ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAP---IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~P---igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|-++. +-+|.-++|+||||+|||||+.+++..+..... .++|+..-+..+.. ..+.+ ...
T Consensus 41 ~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg--~VlyId~E~s~~~~--ra~rlgv~~~~l 116 (356)
T 3hr8_A 41 VIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGG--VAAFIDAEHALDPV--YAKNLGVDLKSL 116 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCCCCHH--HHHHHTCCGGGC
T ss_pred eecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC--eEEEEecccccchH--HHHHcCCchhhh
Confidence 48899999999998 558999999999999999999999988765433 35666443322222 22222 122
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
.+....+ ....+.+++.+...+.--++++||++.+.
T Consensus 117 ~i~~~~~---------~e~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 117 LISQPDH---------GEQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp EEECCSS---------HHHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred hhhhccC---------HHHHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 3332221 12334556666654554577789997765
No 48
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.36 E-value=0.00055 Score=69.89 Aligned_cols=114 Identities=15% Similarity=0.242 Sum_probs=73.7
Q ss_pred ccccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHHhc----------CCC----eEEEEEEeccc--hhH
Q psy3765 113 KENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAITTN----------HSE----AIMIVMLIDER--PEE 174 (592)
Q Consensus 113 ~l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~----------~~~----~~~I~~lIGeR--~~E 174 (592)
.+.||+..+|.++ -+-+|+-..|+|+||+|||+|+.+++...... ..+ -.++|+...+. ++.
T Consensus 79 ~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~ 158 (322)
T 2i1q_A 79 KLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPER 158 (322)
T ss_dssp EECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHH
T ss_pred eecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHH
Confidence 5889999999998 46689999999999999999999998764211 111 56788776654 666
Q ss_pred HHHHHhhcc--------EEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHc-CCcEEEeccchhHHHHH
Q psy3765 175 VTEMQRSVR--------GEVIASTFDEPAYRHVQVAEMVLEKAKRLVEM-KKDVIILLDSITRLARA 232 (592)
Q Consensus 175 v~e~~~~~~--------~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~-G~dVlll~Dsltr~A~A 232 (592)
+.++.+.+. -..+....+ ..... ..+...+.+..+ +.--+|++||++.+.++
T Consensus 159 l~~~~~~~g~~~~~~~~~l~~~~~~~--~~~~~----~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 159 IMQMAEHAGIDGQTVLDNTFVARAYN--SDMQM----LFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHHHHHHHTCCHHHHHHTEEEEECSS--HHHHH----HHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHHcCCCHHHHhcCEEEEeCCC--HHHHH----HHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 666655441 123333222 12111 122333334433 45558899999999764
No 49
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.32 E-value=0.00037 Score=73.33 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=68.6
Q ss_pred ccccccceeecccc---ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAP---IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~P---igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|.++. +-+|.-+.|.|+||+|||+|+.+++..+.+... .|+|+..-+..+... .+.+ .-.
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~--~vlyid~E~s~~~~~--a~~~g~~~~~l 118 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIY--ARKLGVDIDNL 118 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCCCCHHH--HHHTTCCGGGC
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEeCCCCccHHH--HHHcCCChhhe
Confidence 48899999999987 559999999999999999999999988776433 466765543332221 1222 112
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
.+... + + . ...+++++.+...+.--+|++|+++.+.
T Consensus 119 ~i~~~-~-~-~------e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 119 LCSQP-D-T-G------EQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp EEECC-S-S-H------HHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred eeeCC-C-C-H------HHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 23321 1 1 1 2234556666654444477889998765
No 50
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.29 E-value=0.00037 Score=67.10 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=48.4
Q ss_pred ccccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHH-hcCCCeEEEEEEeccchhHHHHHHh
Q psy3765 113 KENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAIT-TNHSEAIMIVMLIDERPEEVTEMQR 180 (592)
Q Consensus 113 ~l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~-~~~~~~~~I~~lIGeR~~Ev~e~~~ 180 (592)
.+.||+..+|-++ -+-+|+-.+|+||+|+|||||+++|+.... ..... ++|+.-.+..++..+..+
T Consensus 11 ~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 79 (251)
T 2ehv_A 11 RVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP--GVFVTLEERARDLRREMA 79 (251)
T ss_dssp EECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCC--EEEEESSSCHHHHHHHHH
T ss_pred eeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCe--EEEEEccCCHHHHHHHHH
Confidence 4889999999987 688999999999999999999999985333 22222 455555555555554443
No 51
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.24 E-value=0.00057 Score=64.90 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=37.9
Q ss_pred ccccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 113 KENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 113 ~l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.+.||+..+|-++ -+-+|+-.+|+||+|+|||||+.+|+....
T Consensus 6 ~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 6 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred ccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4889999999877 577999999999999999999999987543
No 52
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.23 E-value=0.00054 Score=72.39 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=70.5
Q ss_pred ccccccceeecccc---ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAP---IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~P---igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|.++. +-+|.-+.|.|+||+|||+|+.+++..+.+... .|+|+......+... .+.+ .-.
T Consensus 54 ~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~--~vlyi~~E~s~~~~~--a~~~g~d~~~l 129 (366)
T 1xp8_A 54 VVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG--TCAFIDAEHALDPVY--ARALGVNTDEL 129 (366)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCCCCHHH--HHHTTCCGGGC
T ss_pred eecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC--eEEEEECCCChhHHH--HHHcCCCHHHc
Confidence 48899999999987 448999999999999999999999988776432 467776655444432 2222 112
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
.+..+ + . . ...+.+++.+...+.--+||+||++.+.
T Consensus 130 ~i~~~-~-~-~------e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 130 LVSQP-D-N-G------EQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp EEECC-S-S-H------HHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred eeecC-C-c-H------HHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 33322 2 1 1 2234566677655555578889998664
No 53
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.17 E-value=0.0016 Score=66.79 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=50.5
Q ss_pred ccccccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 113 KENITGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 113 ~l~TGiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
.+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+++.++..++ ..++|+..-+..+++..
T Consensus 50 ~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~ 113 (315)
T 3bh0_A 50 GVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIK 113 (315)
T ss_dssp SBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHH
T ss_pred CccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHH
Confidence 57899999998873 55899999999999999999999998877654 35677776666655443
No 54
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.00055 Score=65.68 Aligned_cols=66 Identities=21% Similarity=0.171 Sum_probs=51.3
Q ss_pred ccccccceeecccc--ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHh
Q psy3765 113 KENITGRIIDLIAP--IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180 (592)
Q Consensus 113 ~l~TGiraID~l~P--igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~ 180 (592)
.+.||+..+|-++. +-+|+-.+|.|++|+|||+|+.+++....... -.++|+...+..+++.+...
T Consensus 4 ~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 4 RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp EECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESSSCHHHHHHHHH
T ss_pred cccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccCCHHHHHHHHH
Confidence 37899999999864 56899999999999999999988887776543 24677777666666655444
No 55
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.00 E-value=0.0018 Score=67.62 Aligned_cols=114 Identities=16% Similarity=0.286 Sum_probs=71.0
Q ss_pred ccccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHHhc-CC---CeEEEEEEecc--chhHHHHHHhhc--
Q psy3765 113 KENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAITTN-HS---EAIMIVMLIDE--RPEEVTEMQRSV-- 182 (592)
Q Consensus 113 ~l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~-~~---~~~~I~~lIGe--R~~Ev~e~~~~~-- 182 (592)
.+.||+..+|-++ -+-+|+-.+|+|++|+|||||+.+|+..+... .. +-.|||+.--+ +++.+..+.+.+
T Consensus 112 ~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 112 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGL 191 (349)
T ss_dssp EECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTC
T ss_pred eecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 4789999999986 45689999999999999999999998765321 00 12566664322 245555554433
Q ss_pred ------cEEEEEeCCCCCHHHHHHHHHhHHHHHHHHHHc-----CCcEEEeccchhHHHHH
Q psy3765 183 ------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEM-----KKDVIILLDSITRLARA 232 (592)
Q Consensus 183 ------~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~-----G~dVlll~Dsltr~A~A 232 (592)
.-+.+....+ +.... ..+..+..+... ..-=+|++||+|.+-++
T Consensus 192 ~~~~v~~ni~~~~~~~--~~~~~----~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 192 DPDEVLKHIYVARAFN--SNHQM----LLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp CHHHHGGGEEEEECCS--HHHHH----HHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred CHHHHhhCEEEEecCC--hHHHH----HHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 1123333222 22221 223445555543 55668889999987655
No 56
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.96 E-value=0.0022 Score=68.54 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=48.5
Q ss_pred ccccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHHhcC----CCeEEEEEEecc--chhHHHHHHhh
Q psy3765 113 KENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAITTNH----SEAIMIVMLIDE--RPEEVTEMQRS 181 (592)
Q Consensus 113 ~l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~----~~~~~I~~lIGe--R~~Ev~e~~~~ 181 (592)
.+.||+..+|-++ -|-+|+-..|+|++|+|||||+.+|+....... .+-.++|+.--+ +...+.++.+.
T Consensus 159 ~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~ 235 (400)
T 3lda_A 159 CLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQR 235 (400)
T ss_dssp EECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred ccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHH
Confidence 5899999999998 566899999999999999999998875443211 233566764333 23444444443
No 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.00085 Score=68.20 Aligned_cols=97 Identities=10% Similarity=0.151 Sum_probs=57.6
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCC-CeEEEEEEeccchhH---HHHHHhhccEEEEEeCCCCCHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHS-EAIMIVMLIDERPEE---VTEMQRSVRGEVIASTFDEPAYRHVQVAE 203 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~-~~~~I~~lIGeR~~E---v~e~~~~~~~~vV~~t~d~~~~~r~~~~~ 203 (592)
..++-++|.|++|+|||+|++.+++.+..... ++.++++-+.+.... ...+.+.+... ......+......
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~--- 117 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVK--VPFTGLSIAELYR--- 117 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCC--CCSSSCCHHHHHH---
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCC--CCCCCCCHHHHHH---
Confidence 56788999999999999999999988765433 566777765432211 22223222100 0001111221111
Q ss_pred hHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 204 MVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 204 ~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
.+.+++...++.++|++|++..+...
T Consensus 118 ---~l~~~l~~~~~~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 118 ---RLVKAVRDYGSQVVIVLDEIDAFVKK 143 (386)
T ss_dssp ---HHHHHHHTCCSCEEEEEETHHHHHHS
T ss_pred ---HHHHHHhccCCeEEEEEcChhhhhcc
Confidence 12344455677999999999887643
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.81 E-value=0.00059 Score=69.57 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=57.5
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcC----CCeEEEEEEeccchh---HHHHHHhhccEEEEEeCCCCCHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNH----SEAIMIVMLIDERPE---EVTEMQRSVRGEVIASTFDEPAYRHVQ 200 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~----~~~~~I~~lIGeR~~---Ev~e~~~~~~~~vV~~t~d~~~~~r~~ 200 (592)
+.++-++|+||+|+|||+|++.+++.+.... .++.++++-+..-.. -..++.+.+... ......+......
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~ 119 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVR--VPFTGLSVGEVYE 119 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCC--CCSSCCCHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCC--CCCCCCCHHHHHH
Confidence 6678899999999999999999998875431 256667776544222 122333333110 0011111221111
Q ss_pred HHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 201 VAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 201 ~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
.+.+++...|+.++|++|++.++...
T Consensus 120 ------~l~~~l~~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 120 ------RLVKRLSRLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp ------HHHHHHTTSCSEEEEEEETTTHHHHS
T ss_pred ------HHHHHHhccCCeEEEEEccHhhhccc
Confidence 12233445678999999999998754
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.73 E-value=0.0016 Score=69.97 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=35.0
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
+.-++|+||+|+|||+|++.|++.+...+++..++|+-+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 56799999999999999999999988877787777775543
No 60
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.66 E-value=0.0067 Score=65.21 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=48.7
Q ss_pred ccccccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHH
Q psy3765 113 KENITGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 176 (592)
Q Consensus 113 ~l~TGiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~ 176 (592)
.+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+|+..+...+ +..++|...-...+++.
T Consensus 185 ~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s~~~l~ 248 (454)
T 2r6a_A 185 GIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMSAQQLV 248 (454)
T ss_dssp SBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSCHHHHH
T ss_pred CCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHH
Confidence 57899999999873 55899999999999999999999999887532 22356666555554444
No 61
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.65 E-value=0.0026 Score=57.38 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.4
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+.+.-++|+|++|+|||+|++.+++.+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45677999999999999999999998764
No 62
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.64 E-value=0.00067 Score=64.34 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=35.4
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 121 ID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
+..+.-..+++.++|+||+|+|||+|++.+++.+... +..++++-+.+
T Consensus 43 l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 43 LKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 3333333478999999999999999999999988764 34456665543
No 63
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.53 E-value=0.0025 Score=64.69 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=31.0
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
.+.-++|+||+|+|||+|++.|++.+... +..++++-+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH
Confidence 56789999999999999999999988654 3445666543
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.49 E-value=0.004 Score=63.64 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=53.1
Q ss_pred ccc--eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccch---hHHHHHHhhccEEEEEeCCCCCHHHHHHHHH
Q psy3765 129 KGQ--RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP---EEVTEMQRSVRGEVIASTFDEPAYRHVQVAE 203 (592)
Q Consensus 129 kGQ--R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~---~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~ 203 (592)
.|+ -++|.|++|+|||+|++.+++.+.... ++.++++-+.... .-+..+.+.+... ......+......
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--- 114 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIP--FPRRGLSRDEFLA--- 114 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCC--CCSSCCCHHHHHH---
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCcc--CCCCCCCHHHHHH---
Confidence 345 799999999999999999998765431 4566777654432 1222333333110 0111112221111
Q ss_pred hHHHHHHHHHHcCCcEEEeccchhHH
Q psy3765 204 MVLEKAKRLVEMKKDVIILLDSITRL 229 (592)
Q Consensus 204 ~a~t~AE~~r~~G~dVlll~Dsltr~ 229 (592)
.+.+++...++.++|++|++..+
T Consensus 115 ---~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 115 ---LLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp ---HHHHHHHHTTCCEEEEEETGGGS
T ss_pred ---HHHHHHhhcCCeEEEEEECcccc
Confidence 12334445688899999998776
No 65
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.49 E-value=0.0034 Score=56.79 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=25.2
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
..+.-++|+|++|+|||+|+..+++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999988765
No 66
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=96.43 E-value=0.014 Score=59.01 Aligned_cols=67 Identities=9% Similarity=-0.101 Sum_probs=54.7
Q ss_pred cccccceeecccccc--ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc
Q psy3765 114 ENITGRIIDLIAPIG--KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182 (592)
Q Consensus 114 l~TGiraID~l~Pig--kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~ 182 (592)
+.|||.-+|-++-=| +|.-.+|.|+||+|||+|+.+++..-.++ +-.|+|+...|.++++..-.+.+
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~--Ge~~~~~~~~e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS--DNLVGMFSISYPLQLIIRILSRF 71 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHT
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC--CCcEEEEEEeCCHHHHHHHHHHc
Confidence 679999999997644 79999999999999999998887766554 33589999999999987755544
No 67
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.42 E-value=0.0094 Score=63.89 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=48.2
Q ss_pred ccccccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHH
Q psy3765 113 KENITGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 176 (592)
Q Consensus 113 ~l~TGiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~ 176 (592)
.+.||+..+|-++- +-+|+-+.|.|+||+|||+++.+|+.++...+ +..++|+..-+..+++.
T Consensus 182 ~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~~~~~l~ 245 (444)
T 2q6t_A 182 GVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEMPAAQLT 245 (444)
T ss_dssp -CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSSCHHHHH
T ss_pred cccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHH
Confidence 47899999999873 55899999999999999999999999887532 33456666655554444
No 68
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.42 E-value=0.0096 Score=62.30 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=49.8
Q ss_pred ccccccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 113 KENITGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 113 ~l~TGiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
.+.||+..+|-++- +-+|+=++|.|+||+|||+|+.+|+.++... +..+.|...-+..+++..
T Consensus 28 gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEms~~ql~~ 91 (338)
T 4a1f_A 28 GIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEMSAEQLAL 91 (338)
T ss_dssp SBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSSCHHHHHH
T ss_pred cccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHH
Confidence 47899999998874 6689999999999999999999999988763 344566666555555443
No 69
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.38 E-value=0.0026 Score=64.43 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=42.2
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRL 212 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t~AE~~ 212 (592)
++++||||||||+|++.|++.+. ..++.+-+++ +.... .+.-.......+..|..+
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~~~-------l~~~~------------~g~~~~~i~~~f~~a~~~ 94 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMG-----INPIMMSAGE-------LESGN------------AGEPAKLIRQRYREAAEI 94 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEHHH-------HHCC---------------HHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeHHH-------hhhcc------------CchhHHHHHHHHHHHHHH
Confidence 67779999999999999998773 2345555432 21111 011111112233444334
Q ss_pred HHcCCcEEEeccchhHHHH
Q psy3765 213 VEMKKDVIILLDSITRLAR 231 (592)
Q Consensus 213 r~~G~dVlll~Dsltr~A~ 231 (592)
.......+|++|++-..+.
T Consensus 95 ~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 95 IRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp HTTSSCCCEEEECCC----
T ss_pred HhcCCCeEEEEechhhhcC
Confidence 4467788999999976554
No 70
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.37 E-value=0.0033 Score=64.91 Aligned_cols=93 Identities=9% Similarity=0.100 Sum_probs=54.9
Q ss_pred ccceeee--ecCCCCChhHHHHHHHHHHHhc----CCCeEEEEEEeccchhHHHHHHhh----ccEEEEEeCCCCCHHHH
Q psy3765 129 KGQRGLL--VASPKSGKSIILQHIAHAITTN----HSEAIMIVMLIDERPEEVTEMQRS----VRGEVIASTFDEPAYRH 198 (592)
Q Consensus 129 kGQR~~I--~g~~g~GKT~Ll~~Ia~~i~~~----~~~~~~I~~lIGeR~~Ev~e~~~~----~~~~vV~~t~d~~~~~r 198 (592)
.++-+.| .|++|+|||+|++.+++.+... +.++.++++-+.+.. ...++++. +... ......+...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~--~~~~~~~~~~- 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP-NLYTILSLIVRQTGYP--IQVRGAPALD- 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC-SHHHHHHHHHHHHTCC--CCCTTCCHHH-
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC-CHHHHHHHHHHHhCCC--CCCCCCCHHH-
Confidence 4567888 8999999999999999876542 235667777664322 22233332 2110 0001111211
Q ss_pred HHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 199 VQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 199 ~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
..-.+.+++...++.++|++|++..+.
T Consensus 125 -----~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 125 -----ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp -----HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred -----HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 112233445556889999999998875
No 71
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0018 Score=67.81 Aligned_cols=41 Identities=10% Similarity=0.069 Sum_probs=34.8
Q ss_pred ccccccceeeccc-cccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 113 KENITGRIIDLIA-PIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 113 ~l~TGiraID~l~-PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.+.||+.-+|-++ -+-+|.-++|.|+||+|||+|+.+++..
T Consensus 105 ~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 105 ELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred ccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4679999999987 2226788899999999999999999876
No 72
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.32 E-value=0.0041 Score=62.30 Aligned_cols=45 Identities=16% Similarity=0.024 Sum_probs=38.8
Q ss_pred cccc-ccceeeccc-cccccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 113 KENI-TGRIIDLIA-PIGKGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 113 ~l~T-GiraID~l~-PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
.+.| |+.++|-+. .+-+|+-++|.|++|+|||||+.+|+..+...
T Consensus 16 ~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4678 999998765 56689999999999999999999999887754
No 73
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.26 E-value=0.0011 Score=71.66 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=43.7
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEE-EeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVM-LIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLE 207 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~-lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t 207 (592)
+..-++|+||||||||+|++.|++.++. ..+.+ +.+....++. ..++
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~-----~f~~l~a~~~~~~~ir---------------------------~~~~ 96 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYANA-----DVERISAVTSGVKEIR---------------------------EAIE 96 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHTTC-----EEEEEETTTCCHHHHH---------------------------HHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCC-----CeEEEEeccCCHHHHH---------------------------HHHH
Confidence 3346899999999999999999886532 22222 2222212221 2223
Q ss_pred HHHHHHHcCCcEEEeccchhHHHHHH
Q psy3765 208 KAKRLVEMKKDVIILLDSITRLARAY 233 (592)
Q Consensus 208 ~AE~~r~~G~dVlll~Dsltr~A~A~ 233 (592)
.|......+...+|++|++.++..+.
T Consensus 97 ~a~~~~~~~~~~iLfIDEI~~l~~~~ 122 (447)
T 3pvs_A 97 RARQNRNAGRRTILFVDEVHRFNKSQ 122 (447)
T ss_dssp HHHHHHHTTCCEEEEEETTTCC----
T ss_pred HHHHhhhcCCCcEEEEeChhhhCHHH
Confidence 34444446888999999998886553
No 74
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.017 Score=62.58 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=30.8
Q ss_pred eEEeeEEEEEeCCCeeEEeCCCCCCCCCCCCeeEC-ccccccccCCCCCeEE
Q psy3765 7 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS-PSQIRRFNLHTGDFVE 57 (592)
Q Consensus 7 ~~~~~G~le~~~dg~gflr~~~~~y~~~~~dvyV~-~~~~r~~~L~vGd~l~ 57 (592)
+..+.-++|++.|+.+.+.+. .+++ .||. .+.+.+..|+.|+.+.
T Consensus 103 p~~~g~~~~~~~~~~~iv~~~-----~~~~-~~v~~~~~~~~~~l~~~~~v~ 148 (437)
T 4b4t_I 103 PLSIGTLEEIIDDDHAIVTSP-----TMPD-YYVSILSFVDKELLEPGCSVL 148 (437)
T ss_dssp SEEEEEEEEECTTSEEEEECS-----SSCC-CEEECCTTSCGGGCCTTCEEE
T ss_pred CceeEEEEEEecCCEEEEEcC-----CCCE-EEEecccccCHhHccCCcEEE
Confidence 445555899999999999885 2233 3333 3356778899999874
No 75
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.20 E-value=0.0056 Score=61.02 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=37.2
Q ss_pred ccccccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 113 KENITGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 113 ~l~TGiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.+.||+.-+|.+++ +-+|+-.+|+|++|+|||||+.+|+..+..
T Consensus 12 ~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 12 AFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp HHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred HhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 47789888888775 338999999999999999999999986653
No 76
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.17 E-value=0.0057 Score=56.49 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=24.1
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+...++|.|++|+|||+|+..+++.+...
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 33459999999999999999999877543
No 77
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.13 E-value=0.015 Score=53.24 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=30.3
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEE
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~l 167 (592)
+|+.++|+|++|+|||+|++.|+..+... +..++|+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 89999999999999999999999877653 44455653
No 78
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.12 E-value=0.0081 Score=74.50 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=74.6
Q ss_pred ccccccceeecccc---ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAP---IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~P---igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|-++. +-+|+-.+|+|+||+|||+|+.+++....++ +-.|+|+...+..++.. .+.+ ...
T Consensus 14 ~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~--G~~vlYI~te~~~~~l~--~~~lg~dl~~i 89 (1706)
T 3cmw_A 14 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY--ARKLGVDIDNL 89 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH--HHHTTCCGGGC
T ss_pred ccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC--CCceEEEEecCccHHHH--HHhhccCccce
Confidence 58899999999975 6789999999999999999999998776654 44578887777665554 2222 122
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A~A 232 (592)
.+... + .. .....+.+.+.+.+..-+|++||++-+...
T Consensus 90 ~i~~p-~--t~------e~l~~ll~~L~~~~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 90 LCSQP-D--TG------EQALEICDALARSGAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp EEECC-S--SH------HHHHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred eeecc-C--cH------HHHHHHHHHHHhccCCCEEEEcchhhhccc
Confidence 23322 1 11 223445566666566778899999887654
No 79
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.10 E-value=0.0073 Score=74.89 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=72.1
Q ss_pred ccccccceeecccc---ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAP---IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~P---igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|-++. +-+|.-+.|.|+||+|||+|+.+++.+..++.. .|+|+..-+..+... .+.+ .-.
T Consensus 363 ~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~--~vlyis~E~s~~~~~--a~~lGvd~~~L 438 (1706)
T 3cmw_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIY--ARKLGVDIDNL 438 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEECTTSCCCHHH--HHHTTCCGGGC
T ss_pred eeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEccCchHHHH--HHHcCCCHHHe
Confidence 58999999999987 669999999999999999999999988876533 467876666555542 2222 112
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
.+.. .+ + .+ ..+++++.+...+.--+|++||++-+.
T Consensus 439 ~i~~-~~-~-~e------~~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 439 LCSQ-PD-T-GE------QALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp EEEC-CS-S-HH------HHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred EEcC-CC-C-HH------HHHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 3322 22 2 22 234456666655555578889998654
No 80
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.10 E-value=0.0058 Score=76.79 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=72.0
Q ss_pred ccccccceeecccc---ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccch-hHHHHHHh-hccEEEE
Q psy3765 113 KENITGRIIDLIAP---IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP-EEVTEMQR-SVRGEVI 187 (592)
Q Consensus 113 ~l~TGiraID~l~P---igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~-~Ev~e~~~-~~~~~vV 187 (592)
.+.||+..+|.++. +-+|.-++|+||||+|||+|+.+++....++.. .|+|+..-+-. .+...-+. .+.. +.
T Consensus 1407 ~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~--~v~Fi~~e~~~~~l~a~~~G~dl~~-l~ 1483 (2050)
T 3cmu_A 1407 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIYARKLGVDIDN-LL 1483 (2050)
T ss_dssp EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC--CEEEECTTSCCCHHHHHHTTCCTTT-CE
T ss_pred cccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEEEcccccCHHHHHHcCCCchh-ce
Confidence 58999999999999 668999999999999999999999887776533 46776554432 22211110 1111 22
Q ss_pred EeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 188 ~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
+.+.+ |. +.++.+++++++++.--+|++||++-+.
T Consensus 1484 v~~~~-~~-------E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1484 CSQPD-TG-------EQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp EECCS-SH-------HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred eecCC-hH-------HHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 23333 22 2455677777766776688889996544
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.04 E-value=0.0039 Score=57.63 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=26.5
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+.+|+.++|+||+|+|||+|++.|+..+.
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999999998876
No 82
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.02 E-value=0.0029 Score=58.65 Aligned_cols=29 Identities=34% Similarity=0.359 Sum_probs=24.5
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|.++-+|+.++|+|++|+|||||++.|+.
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 56788999999999999999999998875
No 83
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.00 E-value=0.0082 Score=75.45 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=72.7
Q ss_pred ccccccceeecccc---ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEE
Q psy3765 113 KENITGRIIDLIAP---IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGE 185 (592)
Q Consensus 113 ~l~TGiraID~l~P---igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~ 185 (592)
.+.||+..+|-++. +-+|.-+.|.|+||+|||+|+.+++..+.++. -.|+|+..-+..+.+. .+.+ .-.
T Consensus 363 ~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~~--a~~lGvd~~~L 438 (2050)
T 3cmu_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY--ARKLGVDIDNL 438 (2050)
T ss_dssp EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH--HHHTTCCTTTC
T ss_pred eeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHHH--HHHcCCCHHHe
Confidence 58999999999987 77999999999999999999999999887643 3467776555444432 2222 112
Q ss_pred EEEeCCCCCHHHHHHHHHhHHHHHHHHHHcCCcEEEeccchhHHH
Q psy3765 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230 (592)
Q Consensus 186 vV~~t~d~~~~~r~~~~~~a~t~AE~~r~~G~dVlll~Dsltr~A 230 (592)
.|... + + . ...+++++++...+.--+|++||++-+.
T Consensus 439 ~I~~~-~-~-~------e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 439 LCSQP-D-T-G------EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp EEECC-S-S-H------HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred EEeCC-C-C-H------HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 33332 1 1 1 2345667777755555578889998765
No 84
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.006 Score=63.35 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=58.8
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcC-----CCeEEEEEEecc---chhHHHHHHhhccEEEEEeCCCCCHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNH-----SEAIMIVMLIDE---RPEEVTEMQRSVRGEVIASTFDEPAYRH 198 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~-----~~~~~I~~lIGe---R~~Ev~e~~~~~~~~vV~~t~d~~~~~r 198 (592)
-++|..++|.||||||||++++.+++.+.... +++..|++-|=. .......+++.+...-+ +...+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~--~~~~~---- 115 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL--CGDIS---- 115 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC----CCCC----
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC--CchHH----
Confidence 46888999999999999999999999886432 356777764322 22345556666532100 11111
Q ss_pred HHHHHhHHHHHHHHHH----cCCcEEEeccchhHHH
Q psy3765 199 VQVAEMVLEKAKRLVE----MKKDVIILLDSITRLA 230 (592)
Q Consensus 199 ~~~~~~a~t~AE~~r~----~G~dVlll~Dsltr~A 230 (592)
.-.+-++|.. +++.+++++|.+.++.
T Consensus 116 ------~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 116 ------LEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp ------HHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred ------HHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 1123345543 5778999999998886
No 85
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.88 E-value=0.012 Score=60.23 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=32.6
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCC------CeEEEEEEecc
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHS------EAIMIVMLIDE 170 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~------~~~~I~~lIGe 170 (592)
+.+.-++|.|++|+|||+|++.+++.+....+ ++.++++-+.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 34567999999999999999999988755322 66677776543
No 86
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.69 E-value=0.065 Score=50.42 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=48.7
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhccEEEEEeCCCCCHHHHHHHHHhHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLE 207 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~~~vV~~t~d~~~~~r~~~~~~a~t 207 (592)
-+|+.+.|.|++|+|||||++.|+..+.. ++..++++- |. ++...+. ......+..+.........
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~--~G~~~~~~d-~d------~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 88 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQ--KGKLCYILD-GD------NVRHGLN-----RDLSFKAEDRAENIRRVGE 88 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEE-HH------HHTTTTT-----TTCCSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEec-Cc------hhhhHhh-----cccCcChHHHHHHHHHHHH
Confidence 46899999999999999999999988763 333233332 21 1111111 1112334444333333445
Q ss_pred HHHHHHHcCCcEEEeccc
Q psy3765 208 KAKRLVEMKKDVIILLDS 225 (592)
Q Consensus 208 ~AE~~r~~G~dVlll~Ds 225 (592)
++..+.+.|..|++-.-+
T Consensus 89 ~~~~~~~~~~~vi~~~~~ 106 (200)
T 3uie_A 89 VAKLFADAGIICIASLIS 106 (200)
T ss_dssp HHHHHHHTTCEEEEECCC
T ss_pred HHHHHHhCCceEEEecCC
Confidence 666677777766644333
No 87
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.63 E-value=0.022 Score=56.16 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=22.5
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.+.-++|.||||+|||+|++.|++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45569999999999999999998754
No 88
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.56 E-value=0.07 Score=55.07 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=35.8
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccch
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP 172 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~ 172 (592)
.+.+|+.++|+|++|+||||++..|+..+.+... ++.++.++-+.
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~--kVllid~D~~r 145 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY--KVLIAAADTFR 145 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC--CEEEEECCCSC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEeCCCcc
Confidence 4678999999999999999999999998876533 45566666543
No 89
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.52 E-value=0.017 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=23.0
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
-++|.|++|+|||+|++.+++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 58999999999999999999887653
No 90
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.50 E-value=0.023 Score=57.33 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.0
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.+.-++|+||||||||+|++.|++.+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46679999999999999999998754
No 91
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.49 E-value=0.011 Score=63.78 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=49.5
Q ss_pred ccccccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHH
Q psy3765 113 KENITGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 176 (592)
Q Consensus 113 ~l~TGiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~ 176 (592)
.+.||+..+|-++- +-+|+-+.|.|+||+|||+++.+|+.++..+ +..++|+..-+..+++.
T Consensus 179 gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~ 241 (444)
T 3bgw_A 179 GVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENI 241 (444)
T ss_dssp SBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHH
T ss_pred CcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHH
Confidence 57899999999884 5589999999999999999999999988765 44566666555554444
No 92
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.48 E-value=0.012 Score=55.92 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=27.1
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
..+|+.++|+|++|+|||||++.|+..+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999987764
No 93
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.46 E-value=0.059 Score=58.37 Aligned_cols=89 Identities=20% Similarity=0.174 Sum_probs=53.1
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhc----cEEEEEeCCCCCHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV----RGEVIASTFDEPAYRHVQVAE 203 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~----~~~vV~~t~d~~~~~r~~~~~ 203 (592)
+++..++++|++|+||||++..|+..+.++ +.++.++.++-......+-++.+ ...++.......|..- ++
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~--G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i---~~ 172 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKL---AK 172 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHH---HH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHH---HH
Confidence 357889999999999999999999988865 34456677765433333322222 2334433222233322 12
Q ss_pred hHHHHHHHHHHcCCcEEEeccc
Q psy3765 204 MVLEKAKRLVEMKKDVIILLDS 225 (592)
Q Consensus 204 ~a~t~AE~~r~~G~dVlll~Ds 225 (592)
.++ +++...|+|++|+ |.
T Consensus 173 ~al---~~a~~~~~DvVII-DT 190 (443)
T 3dm5_A 173 EGV---DYFKSKGVDIIIV-DT 190 (443)
T ss_dssp HHH---HHHHHTTCSEEEE-EC
T ss_pred HHH---HHHHhCCCCEEEE-EC
Confidence 222 3445678897764 63
No 94
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.40 E-value=0.0086 Score=56.56 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=24.2
Q ss_pred cccccceeeccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 114 ENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 114 l~TGiraID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.++--..+.+++..+|+.++|+|++|+|||||++.|+...
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 44555566777777889999999999999999999998755
No 95
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.26 E-value=0.0086 Score=56.96 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=24.0
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
++-+|+.++|+||+|+|||||++.|+...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999999988653
No 96
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.25 E-value=0.015 Score=59.50 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.3
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
|.-++|.||||+|||+|++.+++.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 568999999999999999999998764
No 97
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.25 E-value=0.0094 Score=55.66 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.7
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+|+-++|+||+|+|||||+++|+..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999998864
No 98
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.24 E-value=0.026 Score=57.89 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
..-++|+||||||||+|++.|++.+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3568999999999999999998764
No 99
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.23 E-value=0.066 Score=58.93 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=29.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+.+.+|+.++|+|++|+|||||++.|+..+...
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 457899999999999999999999999877654
No 100
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.16 E-value=0.083 Score=48.83 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=27.2
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
.-+|..+.|.|.+|+||||+++.|+..+...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3468889999999999999999999988764
No 101
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.14 E-value=0.11 Score=53.38 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=34.1
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccc
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDER 171 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR 171 (592)
..+|+.++|+|++|+||||++..|+..+..... .+.++..+-+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~--kV~lv~~D~~ 143 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK--SVVLAAADTF 143 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEEEECTT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC--EEEEEccccc
Confidence 567899999999999999999999998876533 3455666554
No 102
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.08 E-value=0.024 Score=62.01 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=29.5
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHH---HhcCCCeEEEEEEeccc
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAI---TTNHSEAIMIVMLIDER 171 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i---~~~~~~~~~I~~lIGeR 171 (592)
+.++-++|+|++|+|||+|+.++++.. ...+++. ++++.+++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~-v~wv~~~~~ 190 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGG-VHWVSVGKQ 190 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTC-EEEEEEESC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCc-eEEEECCCC
Confidence 345678999999999999999987643 3334443 344545544
No 103
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.05 E-value=0.011 Score=57.11 Aligned_cols=29 Identities=7% Similarity=0.197 Sum_probs=23.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+.++|+||+|+|||||++.|+..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678999999999999999999998874
No 104
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.04 E-value=0.025 Score=57.30 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.3
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
..++|.|++|||||+|++.|++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 469999999999999999998754
No 105
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.99 E-value=0.018 Score=57.25 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+...++|.||+|+|||+++..+++.+..
T Consensus 41 ~~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 41 NMPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3334999999999999999999988754
No 106
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.98 E-value=0.031 Score=54.09 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=21.8
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.-++|+||||+|||+|++.|++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4489999999999999999988653
No 107
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.90 E-value=0.022 Score=58.43 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.8
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+.++|+||+|+|||||++.|+..++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 6799999999999999999998764
No 108
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.87 E-value=0.037 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.0
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.-++|+||||||||+|++.|++.+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3489999999999999999998763
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.84 E-value=0.016 Score=54.67 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=24.7
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.+.+|..+.|+|++|+||||+++.|++.+.
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356789999999999999999999998663
No 110
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.79 E-value=0.015 Score=54.17 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=23.7
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.+.+|..++|+|++|+|||||++.|+..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999988764
No 111
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.75 E-value=0.093 Score=51.63 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.8
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
....++|+||+|+|||+|++.|++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45679999999999999999999864
No 112
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.75 E-value=0.12 Score=52.85 Aligned_cols=46 Identities=13% Similarity=-0.033 Sum_probs=34.8
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev 175 (592)
.+|..++++|++|+||||++..|+..+.+... ++.++..+-+....
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~--~v~l~~~D~~r~~a 141 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGF--KVGLVGADVYRPAA 141 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHHHHHTTC--CEEEEECCCSSSHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEecCCCCHHH
Confidence 35899999999999999999999988876533 45566666444333
No 113
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.75 E-value=0.035 Score=60.83 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.8
Q ss_pred cceeeeecCCCCChhHHHHHHHH---HHHhcCCCeEEEEEEeccch
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAH---AITTNHSEAIMIVMLIDERP 172 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~---~i~~~~~~~~~I~~lIGeR~ 172 (592)
..-++|+|..|+|||||++++++ .-.+.+-+. ++++.+.+..
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~-~~wv~vs~~~ 196 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDS-IVWLKDSGTA 196 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSE-EEEEECCCCS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCc-EEEEEECCCC
Confidence 35689999999999999999886 222233343 3456666643
No 114
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.72 E-value=0.044 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.3
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.-++|+||||||||+|++.|++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 6679999999999999999998754
No 115
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.68 E-value=0.18 Score=52.25 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=52.5
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccch-hHH---HHHHhhccEEEEEeCCCCCHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERP-EEV---TEMQRSVRGEVIASTFDEPAYRHVQV 201 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~-~Ev---~e~~~~~~~~vV~~t~d~~~~~r~~~ 201 (592)
.-.+|+.++|+|++|+||||+++.|+......... +.+.+.+-.. ... ..+.+.+...++.......|...
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~--V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~--- 199 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFS--VVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAV--- 199 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCC--EEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHH---
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHH---
Confidence 34689999999999999999999999887764333 4455555422 222 22223333334444433334322
Q ss_pred HHhHHHHHHHHHHcCCcEEEeccc
Q psy3765 202 AEMVLEKAKRLVEMKKDVIILLDS 225 (592)
Q Consensus 202 ~~~a~t~AE~~r~~G~dVlll~Ds 225 (592)
++-++..+ ...++|+++ +|.
T Consensus 200 v~e~l~~~---~~~~~d~vl-iDt 219 (328)
T 3e70_C 200 AYDAIQHA---KARGIDVVL-IDT 219 (328)
T ss_dssp HHHHHHHH---HHHTCSEEE-EEE
T ss_pred HHHHHHHH---HhccchhhH-Hhh
Confidence 22233322 245778765 674
No 116
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.61 E-value=0.048 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.8
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.-++|+||||||||+|++.|++..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC
Confidence 4589999999999999999988653
No 117
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.60 E-value=0.056 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.9
Q ss_pred eeeecCCCCChhHHHHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++|+|++|+|||+|++.|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 99999999999999999988653
No 118
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.60 E-value=0.014 Score=57.41 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=26.0
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+.+-+|+..+|+||+|+|||||++.|+.
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 35788999999999999999999998774
No 119
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.067 Score=57.70 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.1
Q ss_pred eeeecCCCCChhHHHHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+++.||||||||.|++.||+.++
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998654
No 120
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.60 E-value=0.017 Score=53.69 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=27.2
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+-+|+.++|+||.|+|||||++.|+..+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356889999999999999999999999876
No 121
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.06 Score=58.16 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=21.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
-++++||||||||.|++.||+.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eeEEECcCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998654
No 122
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.044 Score=58.76 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=21.0
Q ss_pred eeeecCCCCChhHHHHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++++||||||||.|++.||+.++
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHT
T ss_pred eEEeCCCCCCHHHHHHHHHHhhC
Confidence 89999999999999999998654
No 123
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.50 E-value=0.019 Score=53.36 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.8
Q ss_pred ccceeeeecCCCCChhHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+|+.++|+||+|+|||||++.|+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999998874
No 124
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.49 E-value=0.018 Score=54.73 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.2
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+|+.++|+||+|+|||||++.|....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999998754
No 125
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.064 Score=58.00 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
-++++||||||||.|++.||+.++
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 389999999999999999998654
No 126
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.45 E-value=0.022 Score=61.73 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=49.6
Q ss_pred cccc-ccceeecccc-ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHH
Q psy3765 113 KENI-TGRIIDLIAP-IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE 177 (592)
Q Consensus 113 ~l~T-GiraID~l~P-igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e 177 (592)
.+.| |+..+|-++- +-+|+=+.|.|+||+|||+|+.+++.++..++ +..++|+..-+..+++..
T Consensus 223 ~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~s~~~l~~ 288 (503)
T 1q57_A 223 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEESVEETAE 288 (503)
T ss_dssp CSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSSCHHHHHH
T ss_pred CccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHH
Confidence 5778 9999999874 44799999999999999999999999887642 334567766666555543
No 127
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.45 E-value=0.023 Score=56.85 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=30.9
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 120 aID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+++-+. +-+|+.++|+||+|+|||||++.|+..+...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 444455 7899999999999999999999999877643
No 128
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.44 E-value=0.018 Score=59.33 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.4
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
|.-+.|-+|+.++|+||+|+|||||++.|+...
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345678899999999999999999999999876
No 129
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.12 Score=55.81 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=30.6
Q ss_pred eeeeceeeeeecCCeeEeeCCCCCCCCCCCCcccC-ccccccCCCCCCCeee
Q psy3765 416 RIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLS-PSQIRRFNLHTGILWK 466 (592)
Q Consensus 416 ~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~-~~~i~~~~l~~gd~~~ 466 (592)
...+.-++|++.|+..-+.+. .++. .||+ .+.|.+-.|++|+.|.
T Consensus 103 p~~~g~~~~~~~~~~~iv~~~-----~~~~-~~v~~~~~~~~~~l~~~~~v~ 148 (437)
T 4b4t_I 103 PLSIGTLEEIIDDDHAIVTSP-----TMPD-YYVSILSFVDKELLEPGCSVL 148 (437)
T ss_dssp SEEEEEEEEECTTSEEEEECS-----SSCC-CEEECCTTSCGGGCCTTCEEE
T ss_pred CceeEEEEEEecCCEEEEEcC-----CCCE-EEEecccccCHhHccCCcEEE
Confidence 445556999999999999874 2222 3333 4556677788898874
No 130
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.42 E-value=0.031 Score=51.04 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=20.1
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 488 NVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~ 510 (592)
.++|+|+|||||++.|++.+...
T Consensus 41 l~G~~G~GKTtL~~~i~~~~~~~ 63 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQALEA 63 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999999987643
No 131
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.39 E-value=0.017 Score=56.94 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=26.3
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|+..+|+|++|+|||||++.|+..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999999988753
No 132
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.39 E-value=0.044 Score=59.93 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=39.2
Q ss_pred cccccceeeccc--cccccceeeeecCCCCChhHHHHHHH-HHHHhcCCCeEEEEEE
Q psy3765 114 ENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIA-HAITTNHSEAIMIVML 167 (592)
Q Consensus 114 l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia-~~i~~~~~~~~~I~~l 167 (592)
+.||+.++|-+. .+-+|+..+|+|++|+|||||+++++ ..+.....+ +||+.
T Consensus 21 ~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g--~i~v~ 75 (525)
T 1tf7_A 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP--GVFVT 75 (525)
T ss_dssp ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC--EEEEE
T ss_pred ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC--EEEEE
Confidence 678999998764 57899999999999999999999853 444432233 45554
No 133
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.36 E-value=0.056 Score=56.04 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=26.2
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
..-++|+|++|||||+|++.|++.+ +..++++-+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS-----GATFFSISA 150 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEEeh
Confidence 5569999999999999999998754 334555544
No 134
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.34 E-value=0.016 Score=56.55 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.8
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+.+-+|+..+|+||+|+|||||++.|+-
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999999998774
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.34 E-value=0.035 Score=57.54 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=33.1
Q ss_pred ceeecc-ccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCe
Q psy3765 119 RIIDLI-APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA 161 (592)
Q Consensus 119 raID~l-~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~ 161 (592)
.+++.+ +.+.+|+.++|+|++|+|||||++.|+..+......+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 344433 4688999999999999999999999987765443343
No 136
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.30 E-value=0.023 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=24.4
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.-+|..++|.|++|+|||||++.|+....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999987654
No 137
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.29 E-value=0.018 Score=57.21 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=26.3
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999999987753
No 138
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.26 E-value=0.044 Score=51.29 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=29.0
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCe
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA 161 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~ 161 (592)
.-+|..+.|.|++|+||||+++.|++.....+-++
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34688999999999999999999999877654444
No 139
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.23 E-value=0.044 Score=51.20 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.6
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEe
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLI 168 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lI 168 (592)
+-++|+|++|+|||+|++.|++.+..++ ..++++-+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~--~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN--VSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT--CCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEh
Confidence 7899999999999999999999887643 33455544
No 140
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.21 E-value=0.018 Score=57.81 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=28.1
Q ss_pred eeec-cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 120 IIDL-IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 120 aID~-l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+++- =+.+-+|+..+|+||+|+|||||++.|+..
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4443 367889999999999999999999988753
No 141
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.20 E-value=0.023 Score=57.09 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=26.1
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+.+-+|+.++|+|++|+|||||++.|+.
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999999998875
No 142
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.20 E-value=0.019 Score=57.43 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.6
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+-+|+..+|+||+|+|||||++.|+..
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3356889999999999999999999987753
No 143
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.20 E-value=0.022 Score=56.43 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=26.1
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+.+-+|+.++|+|++|+|||||++.|+.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35688999999999999999999998875
No 144
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.19 E-value=0.044 Score=50.14 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=24.3
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+|..+.|.|++|+||||+++.|++....
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999987764
No 145
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.18 E-value=0.019 Score=58.18 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=26.0
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+.+-+|+..+|+||+|+|||||++.|+-
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 35788999999999999999999998775
No 146
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.18 E-value=0.028 Score=53.68 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=24.2
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
|++++|+|++|+|||||++.|+....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999999998776
No 147
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.17 E-value=0.027 Score=55.02 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=25.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+.+|..++|.||+|+|||||++.|+..+
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999999998755
No 148
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.17 E-value=0.02 Score=57.01 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.3
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|+..+|+||+|+|||||++.|+..
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999988753
No 149
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.15 E-value=0.024 Score=53.41 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=25.5
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
...+.+|..++|.|++|+||||+++.|+.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999988875
No 150
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.12 E-value=0.02 Score=56.47 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999999988754
No 151
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.11 E-value=0.063 Score=58.67 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=45.3
Q ss_pred ccccccceeeccc--cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHH
Q psy3765 113 KENITGRIIDLIA--PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 176 (592)
Q Consensus 113 ~l~TGiraID~l~--PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~ 176 (592)
.+.||+.-+|-++ .+-+|+..+|+|++|+|||||+.+++.....+ +-.++|+.-.+....+.
T Consensus 262 ~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~~~~l~ 325 (525)
T 1tf7_A 262 RVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEESRAQLL 325 (525)
T ss_dssp EECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSCHHHHH
T ss_pred eeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHH
Confidence 3678887777654 67799999999999999999999999877653 22355555445444433
No 152
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.10 E-value=0.14 Score=55.37 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=33.3
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccc
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDER 171 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR 171 (592)
+++..++++|++|+||||++..|+..+.+.. .++.++.++-.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~ 136 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVY 136 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCcc
Confidence 3688999999999999999999999887653 34556666643
No 153
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.09 E-value=0.02 Score=55.81 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=25.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+||+|+|||||++.|+..
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999987753
No 154
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.08 E-value=0.021 Score=56.32 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.4
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+.+-+|+..+|+||+|+|||||++.|+-
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5678999999999999999999998775
No 155
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.08 E-value=0.021 Score=55.93 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=26.2
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|+..+|+||.|+|||||++.|+..
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999999999988754
No 156
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.06 E-value=0.026 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.6
Q ss_pred ccccccceeeeecCCCCChhHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQH 149 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~ 149 (592)
+.+.+|+-++|+|++|+|||||++.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 4577999999999999999999994
No 157
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.05 E-value=0.021 Score=57.34 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=26.7
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+-+|+..+|+||+|+|||||++.|+..
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3456889999999999999999999987753
No 158
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.04 E-value=0.022 Score=57.02 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=26.3
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+.+|+..+|+||+|+|||||++.|+-.
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999999988753
No 159
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.03 E-value=0.027 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.7
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.|..++|.|++|+|||||++.|+...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999988753
No 160
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.03 E-value=0.021 Score=57.83 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=26.4
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
.=+.+-+|+..+|+||+|+|||||++.|+.
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 345688999999999999999999998775
No 161
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.02 E-value=0.032 Score=51.97 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.6
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+..+|..++|.|++|+||||+++.+++.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4557899999999999999999988874
No 162
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.02 E-value=0.018 Score=55.43 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=19.8
Q ss_pred cccccceeeeecCCCCChhHHHHHHH-HH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIA-HA 153 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia-~~ 153 (592)
.+-+|+.++|+||+|+|||||+++|+ ..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45689999999999999999999988 64
No 163
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.01 E-value=0.048 Score=55.79 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=32.9
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
.+.+|+.++|+|+.|+||||+++.|+......... +.+.+.+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~--V~l~g~d 137 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK--VLMAAGD 137 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCC--EEEECCC
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCe--EEEEeec
Confidence 47789999999999999999999999887754333 3444444
No 164
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.01 E-value=0.024 Score=59.82 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=28.7
Q ss_pred ee-eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 120 II-DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 120 aI-D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
++ |.=+.+.+|+..+|+||+|||||||+++|+-.
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 44 44467889999999999999999999988753
No 165
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.00 E-value=0.051 Score=50.88 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=28.3
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCe
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA 161 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~ 161 (592)
.-+|-.+.|.|++|+||||+++.|++.+...+-++
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 44688899999999999999999998877544333
No 166
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.99 E-value=0.023 Score=57.26 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=26.4
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999999988753
No 167
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.99 E-value=0.023 Score=56.84 Aligned_cols=30 Identities=30% Similarity=0.206 Sum_probs=26.4
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356789999999999999999999988754
No 168
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.97 E-value=0.027 Score=56.57 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.8
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.+.+| ++|+||+|||||+|++.|+...
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHc
Confidence 34466 9999999999999999998753
No 169
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.94 E-value=0.05 Score=55.76 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=31.4
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
++|+.++|+|++|+|||||++.|+........ .+.+.+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g--~V~l~g~D 139 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK--KVMFCAGD 139 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTC--CEEEECCC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC--EEEEEeec
Confidence 47999999999999999999999988775433 34455544
No 170
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.93 E-value=0.023 Score=56.64 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=26.7
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+-+|+.++|+||+|+|||||++.|+-.
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3356889999999999999999999987753
No 171
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.90 E-value=0.095 Score=46.95 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=22.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.+.-++|+|++|||||++++.|++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 457799999999999999998887543
No 172
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.88 E-value=0.053 Score=55.73 Aligned_cols=31 Identities=13% Similarity=-0.079 Sum_probs=27.8
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.+.+|+.++|.|++|+|||||++.|+..+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3789999999999999999999999887654
No 173
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.87 E-value=0.055 Score=51.14 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=32.2
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
+..+|..++|.|++|+|||||++.|+..+..... .+++...+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~--~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI--SVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC--CEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC--eEEEeccCc
Confidence 4567899999999999999999999887754322 344554443
No 174
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.85 E-value=0.024 Score=56.50 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+..+|+||+|+|||||++.|+..
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999987753
No 175
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.83 E-value=0.035 Score=50.66 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.7
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
-+|..++|+|++|+||||+++.|+...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999988754
No 176
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.83 E-value=0.025 Score=56.63 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=26.0
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+.+-+|+..+|+|++|+|||||++.|+-
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35788999999999999999999998775
No 177
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.82 E-value=0.026 Score=54.64 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=24.8
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+-+|+.++|+||+|+|||||++.|+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999998876
No 178
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.82 E-value=0.034 Score=52.36 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=21.7
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+++|+|++|+|||||++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 179
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.80 E-value=0.11 Score=54.31 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=26.7
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
+.-++|+|++|||||+|++.|++.. +..++.+-+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~v~~~ 182 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES-----NATFFNISAA 182 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEECSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh-----cCcEEEeeHH
Confidence 5679999999999999999998753 3345555443
No 180
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.78 E-value=0.031 Score=54.40 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=22.9
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.+-+| ++|+||+|+|||+|++.|+..+
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 34466 9999999999999999998754
No 181
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.75 E-value=0.018 Score=53.71 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=27.5
Q ss_pred ceeeccccccccceeeeecCCCCChhHHHHHHH
Q psy3765 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIA 151 (592)
Q Consensus 119 raID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia 151 (592)
.+++- +++.+|.+++|+|++|+|||||++.|+
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 34555 889999999999999999999997765
No 182
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.74 E-value=0.049 Score=55.42 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=26.3
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+..+|..++|.|++|+|||||++.|+..+.
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 458999999999999999999999987654
No 183
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.73 E-value=0.03 Score=58.94 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=27.6
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+.+|+..+|+||+|+|||||++.|+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 44467889999999999999999999988753
No 184
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.73 E-value=0.03 Score=59.52 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=27.5
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+.+|+..+|+||+|||||||++.|+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 34467889999999999999999999988753
No 185
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.72 E-value=0.03 Score=58.95 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=27.5
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+-+|+..+|+||+|+|||||++.|+-.
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 44456889999999999999999999988753
No 186
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.67 E-value=0.031 Score=58.90 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=27.4
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+.+|+..+|+||+|+|||||++.|+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34457889999999999999999999988753
No 187
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.66 E-value=0.031 Score=59.10 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=27.6
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+-+|+..+|+||+|+|||||++.|+-.
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 44467889999999999999999999988753
No 188
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.58 E-value=0.037 Score=50.82 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=23.4
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+|..++|.|++|+||||+++.|++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999998754
No 189
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.57 E-value=0.033 Score=58.92 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.7
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+.+|+..+|+||+|+|||||++.|+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 44467889999999999999999999988753
No 190
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.56 E-value=0.039 Score=54.86 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.2
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
++...++|.||+|+|||+++..+++.+..
T Consensus 44 ~~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 44 GSMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 34345999999999999999999988754
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.55 E-value=0.31 Score=52.42 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=51.7
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhh----ccEEEEEeCCCCCHHHHHHHHHh
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS----VRGEVIASTFDEPAYRHVQVAEM 204 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~----~~~~vV~~t~d~~~~~r~~~~~~ 204 (592)
+|+.++|+|+.|+||||++..|+..+..... .+.++.++-...-..+.+.. ....++.+.....|..- +..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~--~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i---~~~ 171 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR--RPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESI---RRR 171 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC--CEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHH---HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHH---HHH
Confidence 7899999999999999999999998876533 44566666544333332222 22334444333333321 111
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q psy3765 205 VLEKAKRLVEMKKDVIILLDS 225 (592)
Q Consensus 205 a~t~AE~~r~~G~dVlll~Ds 225 (592)
+ -++++..++|++|+ |.
T Consensus 172 ~---l~~~~~~~~DvVII-DT 188 (425)
T 2ffh_A 172 V---EEKARLEARDLILV-DT 188 (425)
T ss_dssp H---HHHHHHTTCSEEEE-EC
T ss_pred H---HHHHHHCCCCEEEE-cC
Confidence 2 23344568887655 73
No 192
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.45 E-value=0.034 Score=59.20 Aligned_cols=29 Identities=34% Similarity=0.373 Sum_probs=26.4
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+.++|+||+|+|||||+++|+..
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 57889999999999999999999998853
No 193
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.40 E-value=0.04 Score=51.41 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.6
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
|+-++|+||+|+|||||+++|+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999988754
No 194
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.40 E-value=0.11 Score=60.33 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=30.1
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcC-----CCeEEEEEEe
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNH-----SEAIMIVMLI 168 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~-----~~~~~I~~lI 168 (592)
++...++|+|+||+|||+|+..+++.+.... .+..++++-+
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 3455699999999999999999999876532 1455555533
No 195
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.39 E-value=0.045 Score=53.25 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.8
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++..++|+|++|+|||||++.|++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999987553
No 196
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.39 E-value=0.35 Score=49.02 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=33.7
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchh
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPE 173 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~ 173 (592)
+|+.++|+|++|+||||++..|+....+... .+.++..+-+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~--~v~l~~~d~~~~ 139 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR--RPLLVAADTQRP 139 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC--CEEEEECCSSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEecCCcccH
Confidence 8999999999999999999999988876533 345566665443
No 197
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.38 E-value=0.027 Score=59.03 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=27.0
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+.+|+..+|+||+|+|||||++.|+-.
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 4457889999999999999999999988753
No 198
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.36 E-value=0.17 Score=55.68 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=37.6
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev 175 (592)
.+.+.+|..++|.|.+|+|||++++.|+..+..++..-.+-+++|+-+..|.
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el 212 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLEL 212 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGG
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhh
Confidence 4556789999999999999999999988776655432123455666665443
No 199
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.34 E-value=0.04 Score=51.08 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=21.0
Q ss_pred cceeeeecCCCCChhHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|+-++|+|++|+|||||++.|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67789999999999999999975
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.26 E-value=0.076 Score=56.93 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.4
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.-++|+||||||||+|++.|++.+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999998764
No 201
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.24 E-value=0.076 Score=55.90 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=33.5
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
.+.+|+.++|+|+.|+||||+++.|+......... +.+.+.+-
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~--V~l~g~D~ 195 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK--VLMAAGDT 195 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC--EEEECCCC
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCE--EEEecccc
Confidence 56789999999999999999999999887654333 44555543
No 202
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.23 E-value=0.061 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=18.1
Q ss_pred eeeee-cCCCCChhHHHHHHHHHH
Q psy3765 132 RGLLV-ASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 132 R~~I~-g~~g~GKT~Ll~~Ia~~i 154 (592)
...++ ||+|+|||++++.+++.+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 45455 559999999999998765
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.22 E-value=0.047 Score=52.81 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.1
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.-+|.-+.|+||+|+|||||++.|...
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4558999999999999999999988764
No 204
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.17 E-value=0.19 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.1
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+-+.|.|++|+|||+|++++++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 5889999999999999999987653
No 205
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.17 E-value=0.047 Score=52.03 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=23.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
-+|.-++|+||+|+|||||++.|+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 36889999999999999999988763
No 206
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.15 E-value=0.045 Score=54.28 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=22.9
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.+-+| ++|+||+|+|||+|++.|+..+
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 34456 9999999999999999998754
No 207
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.1 Score=56.89 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.5
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
-++++||||||||.|++.||+.+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHT
T ss_pred ceEeeCCCCCcHHHHHHHHHhccC
Confidence 489999999999999999998654
No 208
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.13 E-value=0.11 Score=56.69 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.8
Q ss_pred eeeecCCCCChhHHHHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++|+||||||||+|++.|+...+
T Consensus 52 vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 99999999999999999987653
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.11 E-value=0.34 Score=53.21 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=34.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~ 178 (592)
.+...++|+|.+|+||||++..|+..+.+.+. ++.++.++-......+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~--kVllVd~D~~r~aa~~q 147 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW--KTCLICADTFRAGAFDQ 147 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEECCSSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC--eEEEEeccccchhHHHH
Confidence 45668999999999999999999988876533 44556665544334333
No 210
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.11 E-value=0.079 Score=52.66 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=24.6
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+..++|+||||+|||+|++.|++.+...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4569999999999999999999988753
No 211
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.10 E-value=0.054 Score=51.33 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=22.3
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+++|+|++|+||||+++.|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 212
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.09 E-value=0.037 Score=56.45 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=26.3
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|+..+|+|+.|+|||||++.|+..
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 356889999999999999999999988753
No 213
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.05 E-value=0.054 Score=51.19 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=24.8
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.+|.-+.|+|++|+|||||++.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999999888743
No 214
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.05 E-value=0.028 Score=59.01 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=26.9
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+-+|+..+|+||+|+|||||++.|+-.
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456889999999999999999999988753
No 215
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.04 E-value=0.092 Score=53.58 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=29.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHH-hcCCCeEEEEEEe
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAIT-TNHSEAIMIVMLI 168 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~-~~~~~~~~I~~lI 168 (592)
.++.+.|+||+|+|||+|+..|++.+. ..+. .++|+-+
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~--~v~~~~~ 189 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV--STTLLHF 189 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC--CEEEEEH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCC--cEEEEEH
Confidence 368899999999999999999999887 6533 3455533
No 216
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.03 E-value=0.022 Score=58.63 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=16.8
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||+.|+.-
T Consensus 86 vG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp ESSSCHHHHHHHHHHTTS
T ss_pred ECCCCchHHHHHHHHHcC
Confidence 899999999999999984
No 217
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.03 E-value=0.028 Score=57.84 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=26.5
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.|-+|+.++|+|++|+|||||++.|+..
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 357889999999999999999999887753
No 218
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.03 E-value=0.046 Score=57.85 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=28.6
Q ss_pred ceee-ccccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 119 RIID-LIAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 119 raID-~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
.++| .=+.+-+|+..+|+||+|+|||||++.|+.
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 4553 446889999999999999999999988774
No 219
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.02 E-value=0.081 Score=49.21 Aligned_cols=29 Identities=24% Similarity=0.087 Sum_probs=25.4
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+|..+.|.|++|+||||+++.|++.....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 57789999999999999999999877653
No 220
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.99 E-value=0.04 Score=55.32 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=24.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+- |+.++|+|++|+|||||++.|+-.
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 4567 999999999999999999988754
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.93 E-value=0.086 Score=48.43 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=25.0
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+|..++|.|++|+||||+++.++..+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5889999999999999999999987654
No 222
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.86 E-value=0.051 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=22.9
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+-+|+-++|+||+|+|||||++.|+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999988764
No 223
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.81 E-value=0.069 Score=49.04 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=23.9
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
-++..+.|.|++|+||||+++.+++.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 367889999999999999999998754
No 224
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.76 E-value=0.096 Score=55.01 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.9
Q ss_pred EecCCCCCcHHHHHHHHHHHHhc
Q psy3765 487 VNVASPKSGKSIILQHIAHAITT 509 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~ 509 (592)
+.++|+|+||||||+.|++.+..
T Consensus 140 ~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 140 LVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhhcCc
Confidence 34899999999999999997754
No 225
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.73 E-value=0.085 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.0
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcCCC
Q psy3765 487 VNVASPKSGKSIILQHIAHAITTNHS 512 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~~~~ 512 (592)
+-.+|||+|||+|++.+|+.+..+.|
T Consensus 74 Ll~GppGtGKT~la~~la~~l~~~~~ 99 (368)
T 3uk6_A 74 LIAGQPGTGKTAIAMGMAQALGPDTP 99 (368)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCSSCC
T ss_pred EEECCCCCCHHHHHHHHHHHhcccCC
Confidence 45899999999999999999876543
No 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=92.62 E-value=0.22 Score=59.68 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=30.7
Q ss_pred cceeeeecCCCCChhHHHHHHHHH--HHhcCCCeEEEEEEeccchh
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHA--ITTNHSEAIMIVMLIDERPE 173 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~--i~~~~~~~~~I~~lIGeR~~ 173 (592)
..-++|+|++|+|||||++++++. +...++. .++++-+++...
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~-gV~WVsVs~~~d 194 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNS 194 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSS-CEEEEECCCSSS
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCC-cEEEEEeCCCCC
Confidence 457899999999999999999852 3433343 255667776543
No 227
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.61 E-value=0.053 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.0
Q ss_pred EecCCCCCcHHHHHHHHHHHHh
Q psy3765 487 VNVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~ 508 (592)
..++|+||||||||++|+..+.
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHG
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 3478999999999999999763
No 228
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.61 E-value=0.053 Score=56.32 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.7
Q ss_pred ccc--cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 127 IGK--GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 127 igk--GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+-+ |++.+|+|++|+|||||++.|+...
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456 9999999999999999999988753
No 229
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.60 E-value=0.11 Score=47.47 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=25.8
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEE
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVM 166 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~ 166 (592)
.+.|.|++|+||||+++.|++.+... +..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~--g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ--GINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT--TCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CceEEEE
Confidence 47899999999999999999987643 3334444
No 230
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.56 E-value=0.073 Score=54.56 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
-.++.||+|+|||+++..+++.+...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCC
Confidence 37999999999999999999988743
No 231
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.48 E-value=0.069 Score=58.94 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=28.2
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 120 aID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++.+..+.+|+..+|+|++|+|||||++.|+-
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455555678999999999999999999998774
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.37 E-value=0.03 Score=57.79 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.5
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 121 ID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+|.|.++-+|+..+|+|++|+|||||++.|+.
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 57778888999999999999999999987763
No 233
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.35 E-value=0.1 Score=51.38 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.6
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.+.-++|+||||+|||++++.|++.+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999998763
No 234
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.34 E-value=0.054 Score=50.40 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=17.3
Q ss_pred ecCCCCCcHHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAHA 506 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~ 506 (592)
.++|+|||||||+++|+..
T Consensus 12 l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 12 ISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHhh
Confidence 3799999999999999985
No 235
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.33 E-value=0.076 Score=47.70 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=20.8
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.+.|.|++|+||||+++.|++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987643
No 236
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.30 E-value=0.083 Score=48.52 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.3
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+..+.|+|++|+||||+++.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998765
No 237
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.30 E-value=0.11 Score=49.43 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=16.1
Q ss_pred cCCCCCcHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAH 505 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~ 505 (592)
++|+|||||||+++|+.
T Consensus 36 ~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999999999999994
No 238
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.28 E-value=0.13 Score=48.60 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=27.0
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccc
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDER 171 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR 171 (592)
+|+-..|.|++|+||||++.++++.....+..+.++-..++.|
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r 44 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSR 44 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC----
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccc
Confidence 4778899999999999999777776654433332222344543
No 239
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.27 E-value=0.068 Score=52.82 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=25.9
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+-+ +..+|+||+|+|||||++.|+-.
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 33456778 99999999999999999988753
No 240
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.20 E-value=0.14 Score=55.95 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=26.0
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
.-++|.|+||||||+|++.|++.. +..++++-|.
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn~~ 272 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANET-----GAFFFLINGP 272 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEEHH
T ss_pred CcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEEch
Confidence 459999999999999999988753 3455666553
No 241
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.14 E-value=0.082 Score=47.95 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
|-++|.|++|+||||+++.|++.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 7899999999999999999988654
No 242
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.10 E-value=0.072 Score=52.46 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=24.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
-+|..++|.|++|+|||||++.|++.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999998654
No 243
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.07 E-value=0.051 Score=55.32 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=28.4
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHH
Q psy3765 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIA 151 (592)
Q Consensus 121 ID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia 151 (592)
||-+..+-+|+..+|+|++|+|||||++.|+
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 6777888899999999999999999999887
No 244
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.02 E-value=0.13 Score=53.19 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=30.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHHHhcCCCe
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA 161 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~ 161 (592)
..+.+|..++|+|++|+|||||+..|+..+.+....+
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 3478999999999999999999999998776544443
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.95 E-value=0.064 Score=49.77 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.2
Q ss_pred EecCCCCCcHHHHHHHHHHHH
Q psy3765 487 VNVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~ 507 (592)
+.++|||||||||+++|+...
T Consensus 9 ~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEECCTTSSHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 447999999999999999854
No 246
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.94 E-value=0.11 Score=54.49 Aligned_cols=31 Identities=23% Similarity=0.161 Sum_probs=27.9
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+-+|+.++|+||+|+|||||++.|+..+...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 6789999999999999999999999887753
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.92 E-value=0.18 Score=51.38 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=33.5
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccc
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDER 171 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR 171 (592)
..+|+.++|+|++|+||||++..|+...... .+..+.++..+-.
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~ 145 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTY 145 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCcc
Confidence 3579999999999999999999999887742 2334556666543
No 248
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.91 E-value=0.073 Score=48.93 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.6
Q ss_pred EecCCCCCcHHHHHHHHHHHHh
Q psy3765 487 VNVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~ 508 (592)
+-++|||+|||||++.|++.+.
T Consensus 42 ~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 42 TFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp EECCSSSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 3488999999999999999885
No 249
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.89 E-value=0.33 Score=49.22 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.3
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
-++|.|++|+|||+++..+++.++.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3799999999999999999988764
No 250
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.86 E-value=0.23 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.8
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
..-++|.|++|+|||+|++.|++.+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999988653
No 251
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.86 E-value=0.1 Score=51.75 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=28.9
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
.-++|+||+|||||++++.|++.+..... .++++-+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~--~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEE--AMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGG--GEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCc--ceEEeeccc
Confidence 46899999999999999999998764322 245555554
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.82 E-value=0.093 Score=47.76 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.8
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
|.-+.|.|++|+||||+++.+++.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5678999999999999999998754
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.81 E-value=0.1 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.6
Q ss_pred ecCCCCCcHHHHHHHHHHHHhc
Q psy3765 488 NVASPKSGKSIILQHIAHAITT 509 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~ 509 (592)
.++|+|+|||||++.|+..+..
T Consensus 27 I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 27 LSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EECCTTSCTHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhh
Confidence 4799999999999999998764
No 254
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.80 E-value=0.1 Score=47.98 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.2
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+|..+.|.|++|+||||+++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998765
No 255
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.80 E-value=0.066 Score=49.86 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.2
Q ss_pred ecCCCCCcHHHHHHHHHHHHh
Q psy3765 488 NVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~ 508 (592)
.++|+|||||||+++|+..+.
T Consensus 6 l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 6 ISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EESSSSSSHHHHHHHHHHHCG
T ss_pred EECCCCCCHHHHHHHHHhhCC
Confidence 378999999999999998653
No 256
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.72 E-value=0.081 Score=48.26 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.2
Q ss_pred ccceeeeecCCCCChhHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+|.+++|+|++|+|||+|+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999988864
No 257
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.68 E-value=0.07 Score=50.59 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=17.6
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+|||||||+++|+.-+
T Consensus 26 ~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 7999999999999999865
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.65 E-value=0.072 Score=50.46 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.5
Q ss_pred EecCCCCCcHHHHHHHHHHHH
Q psy3765 487 VNVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~ 507 (592)
+.++|+|||||||+++|+...
T Consensus 8 ~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 8 VLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999865
No 259
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.099 Score=58.72 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=28.9
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 120 aID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.++.+..+.+|+..+|+||+|+|||||++.|+-.
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 4555556789999999999999999999988753
No 260
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.59 E-value=0.081 Score=55.78 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=17.2
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||++||--+
T Consensus 36 lGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EESTTSSHHHHHHHHHTSS
T ss_pred ECCCCchHHHHHHHHhcCC
Confidence 8999999999999999743
No 261
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.56 E-value=0.081 Score=57.40 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=26.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+.+-+|++++|+|+.|+|||||++.|+....
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 4566999999999999999999999886543
No 262
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.56 E-value=0.073 Score=53.09 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=26.0
Q ss_pred cccc---cceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 126 PIGK---GQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 126 Pigk---GQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.+-+ |+.+.|+|++|+||||+++.|+..+.
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4455 99999999999999999999998654
No 263
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.56 E-value=0.09 Score=50.37 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=22.0
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.-++..+.|.|++|+||||+++.|++.
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346778999999999999999998874
No 264
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.55 E-value=0.88 Score=47.03 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=33.2
Q ss_pred eeccccc-cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEec
Q psy3765 121 IDLIAPI-GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLID 169 (592)
Q Consensus 121 ID~l~Pi-gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIG 169 (592)
++.+.|. ++.-+++|+|.+|+|||||+..++..+...... +.++.++
T Consensus 69 ~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~k--V~vi~~D 116 (355)
T 3p32_A 69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHR--VAVLAVD 116 (355)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCC--EEEEEEC
T ss_pred HHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCc--eEEEecC
Confidence 3344443 456689999999999999999999887664333 4444444
No 265
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.53 E-value=0.21 Score=57.79 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.7
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+-.|..++|+||+|||||+|++.|+..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 456888999999999999999988764
No 266
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.52 E-value=0.18 Score=58.41 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=24.0
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEE
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~l 167 (592)
-+++.||||||||+|++.||+. -++.++.+-
T Consensus 240 GILL~GPPGTGKT~LAraiA~e-----lg~~~~~v~ 270 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANE-----TGAFFFLIN 270 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTT-----TTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHH-----hCCeEEEEE
Confidence 3899999999999999988863 355555543
No 267
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.51 E-value=0.093 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.1
Q ss_pred eeeecCCCCChhHHHHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++|.||+|||||+|++.|++...
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 268
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.51 E-value=0.34 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEecCCCCCcHHHHHHHHHHHHh
Q psy3765 486 KVNVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 486 ~in~a~p~~GKttll~~ia~~~~ 508 (592)
.+-.+|||+|||+|++.||+...
T Consensus 67 vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 34489999999999999999753
No 269
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.47 E-value=0.1 Score=61.06 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=27.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH---HhcCCCeEEEEEEecc
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAI---TTNHSEAIMIVMLIDE 170 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i---~~~~~~~~~I~~lIGe 170 (592)
..++|+|+.|+|||+|+.++++.. ...+++. ++++-+++
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~-~~~v~~~~ 189 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGG-VHWVSIGK 189 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTC-EEEEECCS
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCe-EEEEEECC
Confidence 457899999999999999887653 2224443 45666655
No 270
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.45 E-value=0.11 Score=47.78 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.8
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.++..+.|.|++|+||||+++.|++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998754
No 271
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.45 E-value=0.11 Score=47.84 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=21.9
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.+++|.|++|+||||+++.|++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988653
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.44 E-value=0.16 Score=53.24 Aligned_cols=31 Identities=19% Similarity=0.113 Sum_probs=27.1
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
.-+|+.++|+||+|+|||||++.|+..++..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 4567799999999999999999999888764
No 273
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.41 E-value=0.11 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+++|.|++|+||||+++.|++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 274
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.40 E-value=0.1 Score=47.71 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++.|.|++|+||||+++.|++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987653
No 275
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.40 E-value=0.12 Score=47.36 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
++-.++|.|++|+||||+++.|++..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998754
No 276
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.35 E-value=0.82 Score=49.14 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=51.2
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhh----ccEEEEEeCCCCCHHHHHHHHHh
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS----VRGEVIASTFDEPAYRHVQVAEM 204 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~----~~~~vV~~t~d~~~~~r~~~~~~ 204 (592)
+...+.++|..|+||||++..|+..+.+.+ +.++.++.++-......+.+.. ....++.+.....|.... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~---~- 173 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIV---N- 173 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHH---H-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHH---H-
Confidence 456788999999999999999999888751 3345666666533333332221 122344433333333221 1
Q ss_pred HHHHHHHHHHcCCcEEEeccc
Q psy3765 205 VLEKAKRLVEMKKDVIILLDS 225 (592)
Q Consensus 205 a~t~AE~~r~~G~dVlll~Ds 225 (592)
..-++++..++|++|+ |.
T Consensus 174 --~~l~~~~~~~~D~VII-DT 191 (433)
T 2xxa_A 174 --AALKEAKLKFYDVLLV-DT 191 (433)
T ss_dssp --HHHHHHHHTTCSEEEE-EC
T ss_pred --HHHHHHHhCCCCEEEE-EC
Confidence 1223444568887665 75
No 277
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.25 E-value=0.053 Score=55.04 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=28.1
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 121 ID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
||-++.+-+|+..+|+|++|+|||||++.|+.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 66677788899999999999999999988763
No 278
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.25 E-value=0.12 Score=49.05 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=23.1
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+|-.+.|.|++|+||||+++.|++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998754
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.16 E-value=0.11 Score=47.07 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.1
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
.+.|.|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999886
No 280
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.15 E-value=0.12 Score=47.60 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.+.|.|++|+||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999998654
No 281
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.15 E-value=0.11 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.7
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+++|.|++|+||||+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 282
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.15 E-value=0.12 Score=49.20 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.2
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+|-++.|.|++|+||||+++.|++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 283
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.13 E-value=0.11 Score=55.34 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=17.3
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||++||--+
T Consensus 35 lGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHHcCC
Confidence 8999999999999999743
No 284
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.12 E-value=0.11 Score=47.98 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.6
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
-++..++|.|++|+||||+++.|++..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998755
No 285
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.09 E-value=0.1 Score=58.49 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=28.7
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 120 IIDLIAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 120 aID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++.+..+-+|+..+|+|++|+|||||++.|+-
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 566666678999999999999999999998764
No 286
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.08 E-value=0.14 Score=50.01 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=31.2
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~E 174 (592)
+.-++|+|++|||||+|++.|++..... +..++++-|..-..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALNEN 71 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSCHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCChh
Confidence 4679999999999999999888754432 234566766665443
No 287
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.06 E-value=0.13 Score=48.16 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.7
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
++..+.|.|++|+||||+++.|++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998755
No 288
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.03 E-value=0.22 Score=53.65 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=25.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.+...++|+|+||||||+|+..|++.+..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999998764
No 289
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.02 E-value=0.088 Score=50.68 Aligned_cols=19 Identities=11% Similarity=0.358 Sum_probs=17.4
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+|||||||+++|+...
T Consensus 29 vGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999854
No 290
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.01 E-value=0.098 Score=51.36 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=17.1
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 37 iG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 8999999999999999743
No 291
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.99 E-value=0.11 Score=48.60 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=19.5
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++|.|++|+||||+++.|+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998886
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.97 E-value=0.081 Score=48.74 Aligned_cols=18 Identities=39% Similarity=0.492 Sum_probs=16.8
Q ss_pred ecCCCCCcHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAH 505 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~ 505 (592)
.++|||||||||++.|+.
T Consensus 14 l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 14 LSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEECTTSCHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 488999999999999998
No 293
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.93 E-value=0.11 Score=55.70 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=23.6
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcCCCcee
Q psy3765 487 VNVASPKSGKSIILQHIAHAITTNHSEAI 515 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~~~~~~~ 515 (592)
+..+|||+|||||++.|++.+..++|+..
T Consensus 134 ll~Gp~G~GKTtLa~aia~~l~~~~~~~~ 162 (440)
T 2z4s_A 134 FIYGGVGLGKTHLLQSIGNYVVQNEPDLR 162 (440)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHCCSSC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCCCe
Confidence 45899999999999999998866655443
No 294
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.88 E-value=0.13 Score=47.76 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+|-.+.|.|++|+||||+++.|++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999888743
No 295
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.85 E-value=0.15 Score=47.80 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=27.6
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 533 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~ 533 (592)
.++|||+|||||++.|+..+..+. -.++++-.++.++++.+...
T Consensus 28 i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~ 71 (235)
T 2w0m_A 28 LTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEESRDSIIRQAK 71 (235)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSSCHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEcccCHHHHHHHHH
Confidence 379999999999999997665432 12322222344555555443
No 296
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.82 E-value=0.97 Score=48.63 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=18.2
Q ss_pred cCCCCCcHHHHHHHHHHHHh
Q psy3765 489 VASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~ 508 (592)
++|||||||+|.+.||+.+.
T Consensus 212 ~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 212 YGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp ESCTTTTHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999998654
No 297
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.78 E-value=0.12 Score=54.39 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||++||--
T Consensus 47 lGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 899999999999999974
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.72 E-value=0.1 Score=48.30 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=16.6
Q ss_pred ecCCCCCcHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAH 505 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~ 505 (592)
.++|||||||||++.|+.
T Consensus 7 l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 7 ITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhc
Confidence 378999999999999997
No 299
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.70 E-value=0.078 Score=55.85 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=26.4
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 121 ID~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
++-+...-+|+..+|+|++|+|||||++.|+.
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhc
Confidence 34455566899999999999999999988764
No 300
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.69 E-value=0.22 Score=48.45 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=27.7
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.+.+|..+.|.|++|+||||+++.|+..+..
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4668999999999999999999999987764
No 301
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.63 E-value=0.088 Score=49.60 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=18.3
Q ss_pred ecCCCCCcHHHHHHHHHHHHh
Q psy3765 488 NVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~ 508 (592)
.++|||||||||+++|+..+.
T Consensus 30 l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 30 VFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEESTTSSHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999998554
No 302
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.62 E-value=0.1 Score=50.74 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=16.6
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||+.|+.-
T Consensus 36 iG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EECTTSCHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 899999999999999974
No 303
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.60 E-value=0.13 Score=54.24 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=16.8
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||++||--
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHHCC
Confidence 899999999999999974
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.58 E-value=0.11 Score=47.28 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=18.3
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
++..+.|.|++|+||||+++.|++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 67789999999999999999988754
No 305
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.58 E-value=0.13 Score=54.24 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=16.8
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||++||--
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCchHHHHHHHHhcC
Confidence 899999999999999974
No 306
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.58 E-value=0.11 Score=47.06 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.8
Q ss_pred ecCCCCCcHHHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~ 507 (592)
.++|||||||||++.||..+
T Consensus 9 l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 9 LVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp EECCTTSCHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999854
No 307
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.57 E-value=0.25 Score=55.25 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=21.8
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcC
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNH 158 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~ 158 (592)
=.+|.||||||||+.+.+++.++.+++
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~ 233 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQG 233 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 368999999999998877777766543
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.57 E-value=0.15 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
-.++|.|++|+||||+++.|++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998765
No 309
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.56 E-value=0.13 Score=47.64 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++|+|++|+|||||++.++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 789999999999999988875
No 310
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.56 E-value=0.17 Score=47.95 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=26.0
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+-+|.-+.|.|++|+||||+++.|+..+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45688999999999999999999998776
No 311
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.55 E-value=0.13 Score=54.40 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.8
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||++||--
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCcHHHHHHHHHHcC
Confidence 899999999999999974
No 312
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.54 E-value=0.18 Score=54.04 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=26.5
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
-+|+-++|+||.|+|||||++.|+..++..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 678999999999999999999998877643
No 313
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.53 E-value=0.13 Score=54.39 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.8
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||++||--
T Consensus 43 lGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCChHHHHHHHHHcC
Confidence 899999999999999974
No 314
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.52 E-value=0.12 Score=46.00 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=17.3
Q ss_pred eeeeecCCCCChhHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHI 150 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~I 150 (592)
-++|.|++|+||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999888
No 315
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.49 E-value=0.16 Score=51.66 Aligned_cols=30 Identities=17% Similarity=0.015 Sum_probs=26.6
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
-.++..++|.|++|+|||||++.|+.....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 467889999999999999999999987764
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.47 E-value=0.26 Score=57.21 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.7
Q ss_pred cceeeeecCCCCChhHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
-..++++||||||||.|++.||+.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHH
Confidence 345899999999999999988874
No 317
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.41 E-value=0.12 Score=47.98 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=17.9
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|.|||||||++.|+..+
T Consensus 39 ~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999977
No 318
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.36 E-value=0.14 Score=48.83 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.2
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++..+.|.|++|+||||+++.|++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987653
No 319
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.36 E-value=0.1 Score=51.20 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=25.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.+..++..+.|+|+||+||||+++.|+...
T Consensus 27 ~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 27 KSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356678899999999999999999988754
No 320
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.29 E-value=0.12 Score=54.25 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||++||--
T Consensus 32 lGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECCCTHHHHHHHHHHHTS
T ss_pred ECCCCccHHHHHHHHHcC
Confidence 899999999999999973
No 321
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.25 E-value=0.13 Score=54.52 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
..+.+|+.++|.||+|+|||||++.|+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46778999999999999999999999864
No 322
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.23 E-value=0.25 Score=51.33 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.7
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+.+++|+|+||+|||||+..|.......
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 7889999999999999999998876544
No 323
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.22 E-value=0.17 Score=48.83 Aligned_cols=27 Identities=30% Similarity=0.526 Sum_probs=23.2
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++.++.|.|++|+||||+++.|++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999988653
No 324
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.17 E-value=0.13 Score=49.98 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEecCCCCCcHHHHHHHHHHHHhcCCC
Q psy3765 486 KVNVASPKSGKSIILQHIAHAITTNHS 512 (592)
Q Consensus 486 ~in~a~p~~GKttll~~ia~~~~~~~~ 512 (592)
.+.++|||||||||++.|++...-.++
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 344899999999999999976544333
No 325
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.16 E-value=0.14 Score=47.43 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++|+|++|+|||||++.++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 789999999999999988875
No 326
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.15 E-value=0.27 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.0
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
++|.|++|+||||+++.|++.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999999877553
No 327
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.14 E-value=0.34 Score=54.97 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.6
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.++..++|+|+||+|||+|+..+++.+..
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 35778999999999999999999988765
No 328
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.14 E-value=0.16 Score=56.02 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=27.8
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+.+..-.+|.-++|+||||||||+|++.|+..+.
T Consensus 100 ~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 100 QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3333334899999999999999999999998764
No 329
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.12 E-value=0.11 Score=54.38 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+.+-+|+.++|+|++|+|||||++.|+..+.
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3567899999999999999999998886543
No 330
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.11 E-value=0.13 Score=56.72 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.9
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.+-+|+.++|+|+.|+|||||++.|+-.
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999999999988753
No 331
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.11 E-value=0.13 Score=51.32 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||+.|+.-
T Consensus 38 iG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 899999999999999974
No 332
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.10 E-value=0.051 Score=60.22 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=16.8
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+|+|||||++.|+.-
T Consensus 373 vG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp ECSTTSSHHHHHTTTTTS
T ss_pred ECCCCChHHHHHHHHhcC
Confidence 899999999999999984
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.03 E-value=0.23 Score=51.46 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=21.7
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
-++|.||+|+|||||++.|...+.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4899999999999999998876653
No 334
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.91 E-value=0.12 Score=51.07 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=17.2
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 30 iG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999743
No 335
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.91 E-value=0.2 Score=46.95 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=21.3
Q ss_pred EEecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 486 KVNVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 486 ~in~a~p~~GKttll~~ia~~~~~~ 510 (592)
.+..+|||+|||||++.+++.+...
T Consensus 55 ~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3458999999999999999987654
No 336
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.88 E-value=0.14 Score=56.75 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=27.4
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.=+.+-+|+.++|+||+|+|||||++.|+...
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33567899999999999999999999887643
No 337
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.87 E-value=0.22 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.9
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 487 VNVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~~ 510 (592)
+..+|||+|||+|++.|++.+...
T Consensus 58 ~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 58 YLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc
Confidence 457999999999999999988654
No 338
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.85 E-value=0.13 Score=51.04 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=17.1
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 39 iG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999743
No 339
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.80 E-value=0.14 Score=51.27 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=17.2
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 43 iG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 8999999999999999743
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.79 E-value=0.16 Score=47.62 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=18.9
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
.++|.|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 341
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.77 E-value=0.15 Score=54.31 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
+.|+||||||||++|+.-
T Consensus 53 lGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EESTTSSHHHHHHHHHTC
T ss_pred ECCCCChHHHHHHHHhCC
Confidence 889999999999999973
No 342
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.77 E-value=0.2 Score=46.77 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=21.5
Q ss_pred ccceeeeecCCCCChhHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+...++|.|++|+||||+++.|++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999988864
No 343
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.72 E-value=0.17 Score=50.60 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=16.4
Q ss_pred cCCCCCcHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAH 505 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~ 505 (592)
++|+||||||||+.|+.
T Consensus 52 ~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAG 68 (267)
T ss_dssp ECCTTSSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 89999999999999997
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.72 E-value=0.18 Score=45.45 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.6
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
..+.|.|++|+||||+++.|++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987653
No 345
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.70 E-value=0.19 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.3
Q ss_pred EecCCCCCcHHHHHHHHHHHHh
Q psy3765 487 VNVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~ 508 (592)
+-.+|||+|||+|++.||+.+.
T Consensus 43 ll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 43 LLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp EEESCTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999764
No 346
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.70 E-value=0.53 Score=46.48 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=27.1
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCC
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHS 159 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~ 159 (592)
+|.-+.|.|++|+||||+++.|+..+...+-
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~ 56 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI 56 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999998876543
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.64 E-value=0.32 Score=44.40 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=22.0
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.++|.|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987754
No 348
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.64 E-value=0.13 Score=56.95 Aligned_cols=31 Identities=32% Similarity=0.305 Sum_probs=26.9
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.=+.+-+|+.++|+||+|+|||||++.|+..
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3456889999999999999999999988754
No 349
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.64 E-value=0.17 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.4
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
-+++|+|++|+|||+|++.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3789999999999999988864
No 350
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.63 E-value=0.16 Score=47.77 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=18.0
Q ss_pred ecCCCCCcHHHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~ 507 (592)
.++|||||||||++.|+..+
T Consensus 34 l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 47999999999999999865
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.61 E-value=0.19 Score=45.15 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.1
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+++|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987553
No 352
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.57 E-value=0.15 Score=51.47 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=17.1
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 40 iGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999743
No 353
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.55 E-value=0.13 Score=57.00 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=27.3
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 122 D~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|.=+.+-+|+.++|+|++|+|||||++.|+..
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457889999999999999999999988753
No 354
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.55 E-value=0.16 Score=49.43 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+|+||||||+.|+.-
T Consensus 41 iG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 899999999999999974
No 355
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.53 E-value=0.35 Score=45.85 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.7
Q ss_pred EecCCCCCcHHHHHHHHHHHHh
Q psy3765 487 VNVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~ 508 (592)
+.++|||+|||||+.+||..+.
T Consensus 28 ~i~G~~GsGKTtl~~~l~~~~~ 49 (243)
T 1n0w_A 28 EMFGEFRTGKTQICHTLAVTCQ 49 (243)
T ss_dssp EEECCTTSSHHHHHHHHHHHTT
T ss_pred EEECCCCCcHHHHHHHHHHHHh
Confidence 3489999999999999998643
No 356
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.53 E-value=0.18 Score=51.10 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=25.2
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
-+++..++|.||+|+||||+++.|++.+..
T Consensus 33 ~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 33 PRDLPHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp TTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 456656999999999999999999986654
No 357
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.51 E-value=0.12 Score=54.30 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||++||--
T Consensus 37 lGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp ECSCHHHHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 899999999999999973
No 358
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.48 E-value=0.16 Score=49.98 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||+.|+.-
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 899999999999999974
No 359
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.47 E-value=0.16 Score=49.94 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=17.2
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999743
No 360
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.46 E-value=0.15 Score=49.71 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=17.7
Q ss_pred ecCCCCCcHHHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~ 507 (592)
.++|+|||||||++.|+...
T Consensus 21 l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 21 VSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EECCTTSCHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 47999999999999999854
No 361
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=89.44 E-value=0.86 Score=39.26 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=37.9
Q ss_pred eceeeeeecCCeeEeeCCCCCCCCCCCCcccCccccccC--CCCCCCeeeeeec
Q psy3765 419 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRF--NLHTGILWKGEIR 470 (592)
Q Consensus 419 ~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~--~l~~gd~~~G~v~ 470 (592)
..|.+--..+||||+... .+..||||..+.|..- .|+.||.|.=.+.
T Consensus 19 ~~G~Vkwf~KGfGFI~~d-----dg~~DvFvH~s~i~~~~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 19 CQGVVCAMKEAFGFIERG-----DVVKEIFFHYSEFKGDLETLQPGDDVEFTIK 67 (97)
T ss_dssp EEEEECCCCSSEEEEECS-----SSCCCEEEETTTCCSCTTSCCSCCEEEEEEC
T ss_pred eeEEEEEEeCCceEEecC-----CCCceEEEEehHhccccCCCCCCCEEEEEEE
Confidence 456665557899999875 3568999999999874 7999999987774
No 362
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.44 E-value=0.2 Score=49.61 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
-.+.|.|++|+||||+++.|++.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 363
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.40 E-value=0.16 Score=50.92 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||+.|+.-
T Consensus 56 iG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred EcCCCCcHHHHHHHHHcC
Confidence 899999999999999974
No 364
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.39 E-value=0.15 Score=47.34 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=17.6
Q ss_pred ecCCCCCcHHHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~ 507 (592)
.++|||||||||+++|+...
T Consensus 11 l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 11 LSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EECSTTSCHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999854
No 365
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.39 E-value=1.4 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=19.1
Q ss_pred cCCCCCcHHHHHHHHHHHHhcC
Q psy3765 489 VASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~ 510 (592)
++|||||||+|.+.||+....+
T Consensus 188 ~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 188 YGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp ESCSSSSHHHHHHHHHHHHTCE
T ss_pred eCCCCCCHHHHHHHHHHhhCCC
Confidence 8999999999999999865443
No 366
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.38 E-value=0.22 Score=50.11 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
..++|.||+|+|||++++.+++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4499999999999999999998875
No 367
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.35 E-value=0.16 Score=50.62 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||+.|+--
T Consensus 47 ~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 899999999999999974
No 368
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.35 E-value=0.22 Score=48.07 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.6
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
.+|.+++|.|++|+||||+++.|+..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999988754
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.34 E-value=0.36 Score=45.55 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=24.6
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCe
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEA 161 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~ 161 (592)
.++|.|++|+|||||+..|+..+...+-.+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v 35 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRV 35 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCee
Confidence 578999999999999999998887643333
No 370
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.33 E-value=0.14 Score=56.57 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=25.2
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.+-+|+.++|+|++|+|||||++.|+..
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999988753
No 371
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.33 E-value=0.16 Score=50.21 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=17.2
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999843
No 372
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.32 E-value=0.19 Score=49.66 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=16.3
Q ss_pred cCCCCCcHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAH 505 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~ 505 (592)
++|+|+||||||+.|+.
T Consensus 35 ~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ECSTTSSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 89999999999999997
No 373
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.31 E-value=0.15 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999988875
No 374
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.29 E-value=0.16 Score=49.03 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=24.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE 170 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe 170 (592)
++.|+||||+||+|+++.|++.. .+.++..|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-------g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-------GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-------CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-------CCeEEcHHH
Confidence 47899999999999999988743 245666664
No 375
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.28 E-value=0.18 Score=48.02 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=18.9
Q ss_pred ecCCCCCcHHHHHHHHHHHHh
Q psy3765 488 NVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~ 508 (592)
.++|+|+|||||+++|+..+.
T Consensus 6 i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 6 LTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EESCCSSCHHHHHHHHHHHHH
T ss_pred EECCCCChHHHHHHHHHhhcc
Confidence 378999999999999999775
No 376
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.27 E-value=0.17 Score=49.79 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.2
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+|+||||||+.|+.-+
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999743
No 377
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.23 E-value=0.15 Score=56.80 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=25.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|+.++|+||+|+|||||++.|+..
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 56889999999999999999999887753
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.22 E-value=0.35 Score=47.62 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.2
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.++..+.|.|+||+||||+++.|++.+..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999987654
No 379
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.21 E-value=0.18 Score=45.26 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=17.8
Q ss_pred ecCCCCCcHHHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~ 507 (592)
..++|||||||+.+.|++.+
T Consensus 6 l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 6 LEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EECSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999865
No 380
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.19 E-value=0.17 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.4
Q ss_pred ecCCCCCcHHHHHHHHHHHHhc
Q psy3765 488 NVASPKSGKSIILQHIAHAITT 509 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~ 509 (592)
.++|||||||||++.||..+..
T Consensus 30 l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 30 VTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp EECSTTSSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 3799999999999999998753
No 381
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.15 E-value=0.35 Score=55.05 Aligned_cols=66 Identities=15% Similarity=0.365 Sum_probs=0.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcC-----CCeEEEEEEeccchh-----HHHHHHhhccEEEEEeCCCCCHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNH-----SEAIMIVMLIDERPE-----EVTEMQRSVRGEVIASTFDEPAYR 197 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~-----~~~~~I~~lIGeR~~-----Ev~e~~~~~~~~vV~~t~d~~~~~ 197 (592)
.+...++|+|+||||||+++..|++.+.... .++.++.+-+|.+.+ .+..+.+.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~--------------- 263 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEI--------------- 263 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHH---------------
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHH---------------
Q ss_pred HHHHHHhHHHHHHHHHHcCCcEEEecc
Q psy3765 198 HVQVAEMVLEKAKRLVEMKKDVIILLD 224 (592)
Q Consensus 198 r~~~~~~a~t~AE~~r~~G~dVlll~D 224 (592)
.....++|++|
T Consensus 264 ----------------~~~~~~iLfiD 274 (758)
T 3pxi_A 264 ----------------RQAGNIILFID 274 (758)
T ss_dssp ----------------HTCCCCEEEEC
T ss_pred ----------------HhcCCEEEEEc
No 382
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.14 E-value=0.13 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.7
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.|.-++|+||||+|||+|++.|++.+.
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 367899999999999999999988653
No 383
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.14 E-value=0.21 Score=43.71 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++++|++|+|||+|+..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999988764
No 384
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.12 E-value=0.17 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.6
Q ss_pred EecCCCCCcHHHHHHHHHHHHh
Q psy3765 487 VNVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~ 508 (592)
+-++|||+|||||++.||+.+.
T Consensus 55 ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 55 LLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp EEESSTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHhC
Confidence 4589999999999999999873
No 385
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.09 E-value=0.21 Score=47.27 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
++.|.|++|+||||+++.|++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 386
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.08 E-value=0.3 Score=46.39 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=29.1
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCCchhhHHHHH
Q psy3765 487 VNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 533 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER~eEV~d~~~ 533 (592)
+..+|||+|||||+..+|.....+. -.++.+--.+.++++.+..+
T Consensus 27 ~i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 27 LLSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESSSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccCCHHHHHHHHH
Confidence 3489999999999888877665542 23333334455666665554
No 387
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.07 E-value=0.17 Score=56.68 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.9
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.+-+|+.++|+|+.|+|||||++.|+-.
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999999999988753
No 388
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.06 E-value=0.18 Score=49.21 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=17.2
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999744
No 389
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.03 E-value=0.22 Score=43.84 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 789999999999999988775
No 390
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.98 E-value=0.43 Score=46.87 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=67.4
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHHHHHHhhcc----EEEEEeCCCCCHHHHHHHHH
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVR----GEVIASTFDEPAYRHVQVAE 203 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev~e~~~~~~----~~vV~~t~d~~~~~r~~~~~ 203 (592)
.+|+-.+|.|++|+||||++-+++.....+...+.++--..+.| .+ ..+.+.+. ..-+ .+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~-~~i~srlG~~~~~~~~-~~------------- 73 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SI-RNIQSRTGTSLPSVEV-ES------------- 73 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GC-SSCCCCCCCSSCCEEE-SS-------------
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HH-HHHHHhcCCCcccccc-CC-------------
Confidence 46888999999999999999888888776544442221266655 32 12222221 1111 11
Q ss_pred hHHHHHHHHHH---cCCcEEEeccchhHH----HHHHhhhccCCCCCC--C---CCCCCcccccchHHHhhcccc
Q psy3765 204 MVLEKAKRLVE---MKKDVIILLDSITRL----ARAYNTVIPASGKVL--T---GGVDSNALQRPKRFFGAARNI 266 (592)
Q Consensus 204 ~a~t~AE~~r~---~G~dVlll~Dsltr~----A~A~reis~~~Ge~p--~---~Gyp~~l~~~~~~~~erA~~~ 266 (592)
...+-+++.+ .+.--+|++|++.-+ -+..+.++.. |-.- . ..|-+.+|..++.+.+.|-.+
T Consensus 74 -~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V 146 (223)
T 2b8t_A 74 -APEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKI 146 (223)
T ss_dssp -THHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEE
T ss_pred -HHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheE
Confidence 1122233332 233447777988643 3344444432 3221 1 257778888888888888766
No 391
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.97 E-value=0.36 Score=47.88 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=36.2
Q ss_pred ccc-eeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEecc-chhHHHHHHhhc
Q psy3765 129 KGQ-RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDE-RPEEVTEMQRSV 182 (592)
Q Consensus 129 kGQ-R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGe-R~~Ev~e~~~~~ 182 (592)
+|. ++.+.+++|+|||+++..++..+.+.+ .+++++-++. ...+...+++.+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G--~~V~v~d~D~q~~~~~~al~~gl 57 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQG--VRVMAGVVETHGRAETEALLNGL 57 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCCTTCHHHHHHHTTS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCC--CCEEEEEeCCCCChhHHHHhcCc
Confidence 443 578899999999999999998887753 4455555554 334455666655
No 392
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.94 E-value=0.22 Score=43.50 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++|+|++|+|||+|+..+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999987765
No 393
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.93 E-value=0.17 Score=48.09 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=17.3
Q ss_pred ecCCCCCcHHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAHA 506 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~ 506 (592)
.++|+|||||||+++|+..
T Consensus 13 l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 13 LSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EECCTTSCHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHhh
Confidence 4799999999999999984
No 394
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.93 E-value=0.19 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.3
Q ss_pred eeeecCCCCChhHHHHHHHHHHH
Q psy3765 133 GLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+.|.|++|+|||||+..|++..+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhcCC
Confidence 68999999999999999987653
No 395
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.91 E-value=0.13 Score=49.62 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=17.0
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||+.|+..
T Consensus 28 iG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 899999999999999975
No 396
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.90 E-value=0.14 Score=49.47 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=24.5
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.-+|.-++|.|+.|+||||+++.|+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999888753
No 397
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.90 E-value=0.21 Score=50.06 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+++|+|++|+|||||++.|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 398
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.87 E-value=0.2 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.4
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+..++|.||||||||++++.|++.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5579999999999999999999865
No 399
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.85 E-value=0.22 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.0
Q ss_pred eeeecCCCCChhHHHHHHHHHHHh
Q psy3765 133 GLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 133 ~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.+++||+|+|||+++..+++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 799999999999999999998764
No 400
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.84 E-value=0.27 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.2
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
...++|+||||||||+|++.|++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999999865
No 401
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.83 E-value=0.16 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.9
Q ss_pred cCCCCCcHHHHHHHHHHHHh
Q psy3765 489 VASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~ 508 (592)
++|+|||||||++.|+..+.
T Consensus 12 ~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 12 AGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EESTTSSHHHHHHHHHHHHG
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999654
No 402
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.83 E-value=0.17 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.0
Q ss_pred EecCCCCCcHHHHHHHHHHHHh
Q psy3765 487 VNVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~ 508 (592)
+-++|||+|||||++.|++.+.
T Consensus 53 ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 53 LLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEECCTTSSHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999998653
No 403
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.81 E-value=0.19 Score=54.14 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.2
Q ss_pred ccccccce--eeeecCCCCChhHHHHHHHH
Q psy3765 125 APIGKGQR--GLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 125 ~PigkGQR--~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+.+-+|+. ++|+|++|+|||||++.|+.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 45778999 99999999999999998875
No 404
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.77 E-value=0.22 Score=44.29 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 789999999999999987763
No 405
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.76 E-value=0.19 Score=49.91 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+|+||||||+.|+--
T Consensus 32 iG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 899999999999999974
No 406
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.73 E-value=0.19 Score=50.77 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=17.1
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 53 iG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 8999999999999999743
No 407
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.72 E-value=0.11 Score=48.55 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=22.1
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
.+.|.|++|+||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999988764
No 408
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.72 E-value=0.25 Score=48.27 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.6
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
++-+++|+|++|+||||+++.|++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999998643
No 409
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.67 E-value=0.19 Score=50.44 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.2
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+||||||||+.|+.-+
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999743
No 410
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=88.67 E-value=0.44 Score=40.41 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=40.8
Q ss_pred eeeceeeeeecCCeeEeeCCCCCCCCCCCCcccCccccccC--CCCCCCeeeeeecCC
Q psy3765 417 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRF--NLHTGILWKGEIRVP 472 (592)
Q Consensus 417 ~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~--~l~~gd~~~G~v~~~ 472 (592)
....|.+--..+||||+... .+.+||||.-+.|+.- .|+.||.|.=.+...
T Consensus 17 ~~~~G~Vk~f~kGfGFI~~d-----dgg~DvFvH~S~i~~~~~~L~~G~~V~F~~~~g 69 (88)
T 2yty_A 17 KRLLGYVATLKDNFGFIETA-----NHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKG 69 (88)
T ss_dssp CCEEEEEEEECSSEEEEECS-----SSSCEEEEETTTCCSCTTTCCTTCEEEECCCCC
T ss_pred CceeEEEEEEECCccEEecC-----CCCceEEEEEhhhccccCcCCCCCEEEEEEEEC
Confidence 34568887778999999975 3568999999999874 799999998766443
No 411
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.65 E-value=0.21 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.4
Q ss_pred EecCCCCCcHHHHHHHHHHHHhc
Q psy3765 487 VNVASPKSGKSIILQHIAHAITT 509 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~ 509 (592)
+.++|||+|||+|++.+++.+..
T Consensus 47 ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 47 VLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999998754
No 412
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.61 E-value=0.19 Score=50.14 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+|+||||||+.|+.-
T Consensus 39 iG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 899999999999999974
No 413
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.58 E-value=0.18 Score=50.54 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=18.4
Q ss_pred EecCCCCCcHHHHHHHHHHHH
Q psy3765 487 VNVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~ 507 (592)
+-++|||||||||++.||..+
T Consensus 48 lL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 48 LLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEESSTTSCHHHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHc
Confidence 448999999999999999854
No 414
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.57 E-value=0.22 Score=54.70 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=22.3
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+-+| ++|+||||||||+|++.|+..+
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 3456 9999999999999999998754
No 415
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.57 E-value=0.15 Score=56.58 Aligned_cols=19 Identities=37% Similarity=0.350 Sum_probs=17.4
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+|+|||||++.|+.-+
T Consensus 375 vG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EECTTSSHHHHHHHHTTTT
T ss_pred ECCCCCCHHHHHHHHhhcc
Confidence 8999999999999999843
No 416
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.56 E-value=0.16 Score=56.33 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=17.5
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+|+|||||++.|+.-.
T Consensus 375 vG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999854
No 417
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.51 E-value=0.23 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.6
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
-+++|+|++|+|||+|+..++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999988864
No 418
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.50 E-value=0.29 Score=44.52 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.5
Q ss_pred cceeeeecCCCCChhHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
...++|.|++|+||||+++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999988754
No 419
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.49 E-value=0.39 Score=51.35 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=25.0
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhcCC
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAITTNHS 159 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~~~~~ 159 (592)
-++|.|+||+|||+++..+++.+.+.+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999998877544
No 420
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.49 E-value=0.13 Score=53.12 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
+.+-+|+.++|+|++|+|||||++.|+..+.
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3456899999999999999999998886543
No 421
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.49 E-value=0.12 Score=57.25 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=26.3
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=+.+-+|+.++|+||+|+|||||++.|+..
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 357889999999999999999999877653
No 422
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=88.47 E-value=0.24 Score=52.72 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.4
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 124 IAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 124 l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|--+.+|.+++|+|++|+|||||+++|..
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 33467899999999999999999999886
No 423
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.45 E-value=0.096 Score=58.23 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=16.9
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+|+|||||++.|+.-
T Consensus 375 vG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp ECSSSSSHHHHHHTTTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 899999999999999984
No 424
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.45 E-value=0.27 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
|++|+|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999888653
No 425
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.44 E-value=0.2 Score=49.89 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=16.8
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+|+||||||+.|+.-
T Consensus 52 ~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 899999999999999974
No 426
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.43 E-value=0.33 Score=44.20 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=19.7
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 488 NVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~ 510 (592)
..++|||||||+.+.+++.+...
T Consensus 8 i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 8 VTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999977643
No 427
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.42 E-value=0.2 Score=49.73 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=17.2
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~ 507 (592)
++|+|+||||||+.|+.-+
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999743
No 428
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.40 E-value=0.26 Score=43.14 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999988765
No 429
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.38 E-value=0.24 Score=45.71 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=20.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+-..++|.|++|+||||+++.|++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998886
No 430
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.37 E-value=0.18 Score=46.52 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=13.1
Q ss_pred cCCCCCcHHHHHHH
Q psy3765 489 VASPKSGKSIILQH 502 (592)
Q Consensus 489 ~a~p~~GKttll~~ 502 (592)
++|||||||||+++
T Consensus 15 ~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 15 IGSSGSGKSTFAKK 28 (171)
T ss_dssp ECCTTSCHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 89999999999994
No 431
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.37 E-value=0.24 Score=43.08 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=19.1
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++++|++|+|||+|+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999988865
No 432
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.37 E-value=0.26 Score=49.75 Aligned_cols=29 Identities=24% Similarity=0.238 Sum_probs=24.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.+-.+|.-+.|.|+||+||||+++.+++.
T Consensus 28 ~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 28 KAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456778999999999999999988764
No 433
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.31 E-value=0.33 Score=49.21 Aligned_cols=45 Identities=9% Similarity=0.195 Sum_probs=31.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEEeccchhHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~lIGeR~~Ev 175 (592)
.+..++|.|++|||||++++.|++..... +...|++-|+.-+.+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~~~l 68 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALNESL 68 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCCHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCChHH
Confidence 36689999999999999999988754432 2234566666655543
No 434
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.30 E-value=0.32 Score=43.54 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred EecCCCCCcHHHHHHHHHHHHhc
Q psy3765 487 VNVASPKSGKSIILQHIAHAITT 509 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~ 509 (592)
+.++|||+|||+|++.+++.+..
T Consensus 47 ll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEESCGGGCHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 56899999999999999998865
No 435
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.30 E-value=0.21 Score=59.04 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=26.8
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHH
Q psy3765 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 123 ~l~PigkGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
.=+.+-+|++.+|+|+.|+|||||++.|+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345788999999999999999999999884
No 436
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.28 E-value=0.26 Score=45.06 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=22.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+..| -.+|+|+.|+|||+|+..|.-.
T Consensus 22 ~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 22 IPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 445566 8899999999999999877643
No 437
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.26 E-value=0.28 Score=44.94 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.3
Q ss_pred EEecCCCCCcHHHHHHHHHHHHhc
Q psy3765 486 KVNVASPKSGKSIILQHIAHAITT 509 (592)
Q Consensus 486 ~in~a~p~~GKttll~~ia~~~~~ 509 (592)
.+..+|||+|||+|++.+++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 455899999999999999997643
No 438
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=88.21 E-value=1.3 Score=37.73 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=38.4
Q ss_pred eeceeeeeecCCeeEeeCCCCCCCCCCCCcccCcccccc-CCCCCCCeeeeeec
Q psy3765 418 FGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRR-FNLHTGILWKGEIR 470 (592)
Q Consensus 418 ~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~-~~l~~gd~~~G~v~ 470 (592)
...|.+--..+||||+... .+.+||||.-+-|.. -.|+.||.|.=.+.
T Consensus 8 r~~G~Vk~f~KGfGFI~~~-----~gg~DvFvH~s~i~~~~~L~~G~~V~F~v~ 56 (89)
T 1x65_A 8 REMGVIAAMRDGFGFIKCV-----DRDVRMFFHFSEILDGNQLHIADEVEFTVV 56 (89)
T ss_dssp CEEEEEEECCTTBCEEEES-----SSSSCCCCBTTGGGGSCCCCTTCCEEECCB
T ss_pred ceeEEEEEEeCCcceeecC-----CCCccEEEEhhhccCCCCCCCCCEEEEEEE
Confidence 3467777777999999975 356899999999985 36999999986663
No 439
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.20 E-value=0.2 Score=45.49 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.2
Q ss_pred EecCCCCCcHHHHHHHHHHHH
Q psy3765 487 VNVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~ 507 (592)
+.+++||+|||||++.|+..+
T Consensus 12 ~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 12 VLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEECSTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHhh
Confidence 347999999999999999854
No 440
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.19 E-value=0.26 Score=43.50 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 789999999999999988764
No 441
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.19 E-value=0.21 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEecCCCCCcHHHHHHHHHHHHh
Q psy3765 486 KVNVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 486 ~in~a~p~~GKttll~~ia~~~~ 508 (592)
.+-++|||+|||+|++.||+...
T Consensus 54 vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHC
Confidence 35589999999999999999754
No 442
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=88.14 E-value=0.3 Score=52.31 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.6
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+..+++.||||||||+|+..|++.+..
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 456999999999999999999988653
No 443
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.11 E-value=0.33 Score=44.14 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=19.6
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 488 NVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~ 510 (592)
..++|||||||+.+.+++.+...
T Consensus 6 i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 6 VTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999977643
No 444
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.09 E-value=0.28 Score=43.15 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++|+|++|+|||+|+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999988764
No 445
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.07 E-value=0.28 Score=43.11 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.1
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999988775
No 446
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.06 E-value=0.26 Score=43.61 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.3
Q ss_pred eeeeecCCCCChhHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIA 151 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia 151 (592)
|++|+|++|+|||+|+..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998875
No 447
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.04 E-value=0.48 Score=43.47 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.1
Q ss_pred cCCCCCcHHHHHHHHHHHHhcC
Q psy3765 489 VASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~ 510 (592)
.+++||||||+.+++++.+...
T Consensus 6 ~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999977553
No 448
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.04 E-value=0.25 Score=52.14 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+||||||||+.|+.-
T Consensus 60 iGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHhcC
Confidence 899999999999999974
No 449
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.02 E-value=0.33 Score=49.69 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=19.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhcC
Q psy3765 489 VASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~ 510 (592)
++|+|||||||++.||..+...
T Consensus 108 vG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 108 VGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp ECSTTSSHHHHHHHHHHHHHTT
T ss_pred ECCCCCcHHHHHHHHHHHHHhc
Confidence 6899999999999999987654
No 450
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.93 E-value=0.27 Score=43.34 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999988764
No 451
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.89 E-value=0.2 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.5
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 488 NVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~ 510 (592)
.++|+|+||||||++|+......
T Consensus 7 lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 7 VVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEESSSSSHHHHHHHHHHHHC--
T ss_pred EECCCCCCHHHHHHHHhCCCCCC
Confidence 37899999999999999866433
No 452
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.89 E-value=0.29 Score=43.02 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999988765
No 453
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.88 E-value=0.31 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.4
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 488 NVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~ 510 (592)
.++|||+|||||+.+||..+..+
T Consensus 40 i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 40 VTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999988755
No 454
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=87.87 E-value=0.4 Score=38.96 Aligned_cols=47 Identities=28% Similarity=0.466 Sum_probs=35.0
Q ss_pred ceeeeee--cCCeeEeeCCCCCCCCCCCCcccCccccccC---CCCCCCeeeeeecC
Q psy3765 420 DGSLEVL--PDGFGFLRSQGSNYMASSDDIYLSPSQIRRF---NLHTGILWKGEIRV 471 (592)
Q Consensus 420 ~G~l~~~--~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~---~l~~gd~~~G~v~~ 471 (592)
.|.+--. .+||||+... .+.+||||..+-|..- .|+.||.|.=.+..
T Consensus 7 ~G~Vk~fn~~kGfGFI~~~-----~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 7 KGNVKWFNESKGFGFITPE-----DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITN 58 (71)
T ss_dssp EEEEEEEETTTTEEEEEET-----TCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEE
T ss_pred cEEEEEEECCCCcEEEecC-----CCCccEEEEhHHcccccCcCCCCCCEEEEEEEE
Confidence 3444433 4699999975 3568999999999864 58999999866643
No 455
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.85 E-value=0.27 Score=43.29 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.4
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=|++|+|++|+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3789999999999999987764
No 456
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.84 E-value=0.29 Score=43.69 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++|+|++|+|||+|+..+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999988764
No 457
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.82 E-value=0.16 Score=56.41 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 125 APIGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 125 ~PigkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
+.+-+|++++|+|++|+|||||++.|+..
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999887753
No 458
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.79 E-value=0.23 Score=50.01 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.4
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHH
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
++-++|+|++|+|||+|++.|++.+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 44599999999999999999988654
No 459
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.77 E-value=0.24 Score=48.87 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=24.2
Q ss_pred cccceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 128 GKGQRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 128 gkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
++...++|.||+|+|||+++..+++.+..
T Consensus 36 ~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 34345999999999999999999988753
No 460
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.76 E-value=0.14 Score=49.16 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=12.0
Q ss_pred ecCCCCCcHHHHHHHHH-HH
Q psy3765 488 NVASPKSGKSIILQHIA-HA 506 (592)
Q Consensus 488 n~a~p~~GKttll~~ia-~~ 506 (592)
.++|+|||||||+++|+ ..
T Consensus 32 l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 32 LSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECSCC----CHHHHHHC--
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 38999999999999999 64
No 461
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.73 E-value=0.5 Score=44.44 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.0
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
..++|.|++|+|||||+..|...+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 467899999999999999998876654
No 462
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.72 E-value=0.33 Score=50.27 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.7
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcCC
Q psy3765 488 NVASPKSGKSIILQHIAHAITTNH 511 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~~ 511 (592)
-++|+|||||||++.||..+....
T Consensus 134 lvG~nGaGKTTll~~Lag~l~~~~ 157 (328)
T 3e70_C 134 FVGFNGSGKTTTIAKLANWLKNHG 157 (328)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHHhcC
Confidence 378999999999999999876653
No 463
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.71 E-value=0.29 Score=44.63 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
=+++|+|++|+|||+|+..+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999988775
No 464
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.71 E-value=0.27 Score=48.26 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=23.1
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
+.|.-.++|.||||+|||+++..|++.+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4443459999999999999999998865
No 465
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.68 E-value=0.3 Score=43.03 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 789999999999999988765
No 466
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=87.68 E-value=0.49 Score=39.36 Aligned_cols=49 Identities=16% Similarity=0.330 Sum_probs=38.6
Q ss_pred eeeceeeeeecCCeeEeeCCCCCCCCC-CCCcccCcccccc-CCCCCCCeeeeeec
Q psy3765 417 IFGDGSLEVLPDGFGFLRSQGSNYMAS-SDDIYLSPSQIRR-FNLHTGILWKGEIR 470 (592)
Q Consensus 417 ~~~~G~l~~~~~~~gflr~~~~~~~~~-~~d~~v~~~~i~~-~~l~~gd~~~G~v~ 470 (592)
....|.+.-+.+||||+...+ + .+||||.-+-|+. ..|+.||.|.=.+.
T Consensus 7 ~~~~G~V~~~~KGfGFI~~dd-----g~g~DvFvH~s~i~~g~~l~~G~~V~F~v~ 57 (79)
T 2ytv_A 7 GLRRATVECVKDQFGFINYEV-----GDSKKLFFHVKEVQDGIELQAGDEVEFSVI 57 (79)
T ss_dssp SBCCEEEEECCSSEEEESCCC-----SSSSSEEEETTTCCSSCCCCTTCEEECBCE
T ss_pred CcccEEEEEecccceeEeCCC-----CCCCcEEEEhHHcCCCCcCCCCCEEEEEEE
Confidence 345688888889999998742 3 5899999999983 36999999986663
No 467
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.67 E-value=0.3 Score=43.98 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999988775
No 468
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.61 E-value=0.25 Score=43.53 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.1
Q ss_pred eeeeecCCCCChhHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIA 151 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia 151 (592)
|++|+|++|+|||+|++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999998774
No 469
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.61 E-value=0.3 Score=43.53 Aligned_cols=21 Identities=10% Similarity=0.376 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+++|+|++|+|||+|+..+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987765
No 470
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=87.59 E-value=0.37 Score=54.41 Aligned_cols=60 Identities=20% Similarity=0.375 Sum_probs=45.5
Q ss_pred HHHHHhhccccceeeeceeeeeecCCeeEeeCCCCCCCCCCCCcccCccccccCCCCCCCeeeeeecCC
Q psy3765 404 FAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVP 472 (592)
Q Consensus 404 ~~Ilk~~~~~~~~~~~~G~l~~~~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~~l~~gd~~~G~v~~~ 472 (592)
++-+|++.... .-+++|.+...++||||+...+ .+|||+++.+.++-. .||.|.-++.+.
T Consensus 8 l~~lk~~~~~~-~~~~~G~~~~~~~GfgF~~~d~------~~difi~~~~~~~a~--~GD~V~v~i~~~ 67 (644)
T 2id0_A 8 LAQLKQQLHSQ-TPRAEGVVKATEKGFGFLEVDA------QKSYFIPPPQMKKVM--HGDRIIAVIHSE 67 (644)
T ss_dssp HHHHHHHHHHT-SCEEEEEEECCSSSCEEEECSS------SCEEEECHHHHTTSC--TTCEEEEEEECC
T ss_pred HHHHHHhHHhh-CCeEEEEEEEecCCcEEEEECC------CCCEEECHHHHhcCC--CCCEEEEEEecC
Confidence 33444444433 3479999999999999999741 489999999998765 799999888543
No 471
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.50 E-value=0.35 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.5
Q ss_pred cCCCCCcHHHHHHHHHHHHhcC
Q psy3765 489 VASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~~~~~ 510 (592)
++|+|||||||++.||..+...
T Consensus 106 vG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999987654
No 472
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.49 E-value=0.62 Score=43.09 Aligned_cols=24 Identities=21% Similarity=0.030 Sum_probs=20.1
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 487 VNVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~~ 510 (592)
+..++|||||||+.+.|++.+...
T Consensus 8 ~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 8 AFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHhhc
Confidence 347899999999999999977553
No 473
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=87.49 E-value=0.4 Score=38.54 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=32.4
Q ss_pred cCCeeEeeCCCCCCCCCCCCcccCccccccC---CCCCCCeeeeeecC
Q psy3765 427 PDGFGFLRSQGSNYMASSDDIYLSPSQIRRF---NLHTGILWKGEIRV 471 (592)
Q Consensus 427 ~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~---~l~~gd~~~G~v~~ 471 (592)
.+||||+...+ +..||||..|-|+.- .|..|+.|.=.+..
T Consensus 12 ~kGfGFI~~~~-----gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 54 (67)
T 3cam_A 12 AKGFGFITPDE-----GGEDLFAHFSAINMEGFKTLKEGQRVSFDVTT 54 (67)
T ss_dssp TTTEEEEEETT-----SCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEE
T ss_pred CCCeEEEecCC-----CCccEEEEHHHccccCCCCCCCCCEEEEEEEE
Confidence 47999999752 568999999999864 69999999876643
No 474
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.47 E-value=0.24 Score=54.98 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=28.5
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 126 PigkGQR~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
.+-+|+.+.|+|++|+|||||++.|+..+...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 46789999999999999999999999887753
No 475
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.47 E-value=0.24 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEecCCCCCcHHHHHHHHHHHHh
Q psy3765 486 KVNVASPKSGKSIILQHIAHAIT 508 (592)
Q Consensus 486 ~in~a~p~~GKttll~~ia~~~~ 508 (592)
.+.++|||+|||||++.|++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 35589999999999999998653
No 476
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.36 E-value=0.27 Score=46.06 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=18.7
Q ss_pred EecCCCCCcHHHHHHHHHHHH
Q psy3765 487 VNVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~ 507 (592)
+.+++|||||||+.+.||+.+
T Consensus 29 ~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 29 FLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHc
Confidence 348999999999999999876
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.32 E-value=0.35 Score=51.00 Aligned_cols=31 Identities=39% Similarity=0.545 Sum_probs=26.2
Q ss_pred ccccce--eeeecCCCCChhHHHHHHHHHHHhc
Q psy3765 127 IGKGQR--GLLVASPKSGKSIILQHIAHAITTN 157 (592)
Q Consensus 127 igkGQR--~~I~g~~g~GKT~Ll~~Ia~~i~~~ 157 (592)
+-.|++ +.|+|++|+||||++..|+..+...
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 446777 9999999999999999999877643
No 478
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.29 E-value=0.33 Score=42.93 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.5
Q ss_pred ccceeeeecCCCCChhHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+.=|++|+|++|+|||+|+..+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999988764
No 479
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.24 E-value=0.21 Score=46.90 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=23.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHh
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAITT 156 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i~~ 156 (592)
+.++|+|++|+|||||+..|+.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999987764
No 480
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.23 E-value=0.25 Score=54.52 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.7
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHH
Q psy3765 127 IGKGQRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 127 igkGQR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
.-+|+..+|+||.|+|||||++.|+-.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 447999999999999999999988753
No 481
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.18 E-value=0.42 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.0
Q ss_pred ecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 488 NVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~~~~ 510 (592)
-.++||+||||+.+.+++.+...
T Consensus 18 l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 18 LTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999987654
No 482
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.18 E-value=0.33 Score=43.11 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999988765
No 483
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=87.15 E-value=0.38 Score=39.93 Aligned_cols=62 Identities=18% Similarity=0.433 Sum_probs=42.5
Q ss_pred eceeeeee--cCCeeEeeCCCCCCCCCCCCcccCccccccC-------CCCCCCeeeeeecCCCCCCcccceeeeeEEec
Q psy3765 419 GDGSLEVL--PDGFGFLRSQGSNYMASSDDIYLSPSQIRRF-------NLHTGILWKGEIRVPKNGERYFALLKIKKVNV 489 (592)
Q Consensus 419 ~~G~l~~~--~~~~gflr~~~~~~~~~~~d~~v~~~~i~~~-------~l~~gd~~~G~v~~~~~~~~~~~l~~v~~in~ 489 (592)
..|.+--. .+||||+... .+.+||||..|-|..- .|..|+.|.=.+.....+ -.|+||
T Consensus 9 ~~G~Vkwfn~~kGfGFI~~~-----~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG--------~~A~~V 75 (79)
T 1h95_A 9 VLGTVKWFNVRNGYGFINRN-----DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG--------AEAANV 75 (79)
T ss_dssp EEEEEEEEETTTTEEEEEEG-----GGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS--------EEEESB
T ss_pred cceEEEEEECCCCcEEEecC-----CCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCC--------ceeEEE
Confidence 34665544 4699999875 2568999999999863 588999998766433322 135666
Q ss_pred CCCC
Q psy3765 490 ASPK 493 (592)
Q Consensus 490 a~p~ 493 (592)
.+|+
T Consensus 76 ~~p~ 79 (79)
T 1h95_A 76 TGPG 79 (79)
T ss_dssp CCCC
T ss_pred ECcC
Confidence 6654
No 484
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.13 E-value=0.35 Score=46.40 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.5
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
++.|.|++|+||||+++.|++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998755
No 485
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.12 E-value=0.31 Score=43.37 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.1
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHA 153 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~ 153 (592)
=|++|+|++|+|||+|+..+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999887753
No 486
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.12 E-value=0.26 Score=46.61 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.8
Q ss_pred ecCCCCCcHHHHHHHHHHHH
Q psy3765 488 NVASPKSGKSIILQHIAHAI 507 (592)
Q Consensus 488 n~a~p~~GKttll~~ia~~~ 507 (592)
.++||||||||+++.|++..
T Consensus 10 i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 10 IDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999854
No 487
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=87.07 E-value=0.32 Score=44.90 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.0
Q ss_pred ccceeeeecCCCCChhHHHHHHHH
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
+.-+++|+|++|+|||+|+..+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445999999999999999988775
No 488
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.03 E-value=0.38 Score=44.82 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=22.3
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcCCCce
Q psy3765 487 VNVASPKSGKSIILQHIAHAITTNHSEA 514 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~~~~~~ 514 (592)
+..++|||||||+.+.+++.+...+-++
T Consensus 14 ~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 14 VFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3478999999999999999876654444
No 489
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=86.99 E-value=0.45 Score=44.75 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=20.5
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcCCCceeEEEEEEeCC
Q psy3765 487 VNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDER 524 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~~~~~~~~~v~Li~ER 524 (592)
+..+|+|+||||+|-.+++......-.+-++--.+|.|
T Consensus 7 vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r 44 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSR 44 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC----
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccc
Confidence 34788999999998666655443333332222255655
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.99 E-value=0.3 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q psy3765 131 QRGLLVASPKSGKSIILQHIAHAI 154 (592)
Q Consensus 131 QR~~I~g~~g~GKT~Ll~~Ia~~i 154 (592)
-|.+|+|+||+||||+++.|++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999988754
No 491
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.92 E-value=0.34 Score=43.53 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.1
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999988874
No 492
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.92 E-value=0.34 Score=43.69 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999988765
No 493
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.92 E-value=0.35 Score=45.17 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=17.4
Q ss_pred EecCCCCCcHHHHHHHHHH
Q psy3765 487 VNVASPKSGKSIILQHIAH 505 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~ 505 (592)
+.++|||+|||||+..||.
T Consensus 24 ~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 24 QVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4489999999999999998
No 494
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.87 E-value=0.21 Score=50.07 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=16.7
Q ss_pred cCCCCCcHHHHHHHHHHH
Q psy3765 489 VASPKSGKSIILQHIAHA 506 (592)
Q Consensus 489 ~a~p~~GKttll~~ia~~ 506 (592)
++|+|+||||||+.|+.-
T Consensus 36 ~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 799999999999999974
No 495
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.85 E-value=0.39 Score=48.34 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.5
Q ss_pred EecCCCCCcHHHHHHHHHHHHhcC
Q psy3765 487 VNVASPKSGKSIILQHIAHAITTN 510 (592)
Q Consensus 487 in~a~p~~GKttll~~ia~~~~~~ 510 (592)
+..+|||+|||||++.|++.+..+
T Consensus 41 ll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 41 FIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC
Confidence 447999999999999999987543
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.83 E-value=0.37 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.2
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAHAIT 155 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~~i~ 155 (592)
.++|.|++|+||||+++.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999987553
No 497
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.80 E-value=1.3 Score=43.42 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=27.6
Q ss_pred ccceeeeecCCCCChhHHHHHHHHHHHh-cCCCe
Q psy3765 129 KGQRGLLVASPKSGKSIILQHIAHAITT-NHSEA 161 (592)
Q Consensus 129 kGQR~~I~g~~g~GKT~Ll~~Ia~~i~~-~~~~~ 161 (592)
+|.-+.|.|++|+||||+++.+++.+.. .+-.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v 53 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNN 53 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCcee
Confidence 5778889999999999999999998876 54344
No 498
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.80 E-value=0.39 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.9
Q ss_pred eeEEecCCCCCcHHHHHHHHHHH
Q psy3765 484 IKKVNVASPKSGKSIILQHIAHA 506 (592)
Q Consensus 484 v~~in~a~p~~GKttll~~ia~~ 506 (592)
++.+-++++|||||||++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45566999999999999999974
No 499
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.76 E-value=0.34 Score=43.04 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=19.1
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q psy3765 132 RGLLVASPKSGKSIILQHIAH 152 (592)
Q Consensus 132 R~~I~g~~g~GKT~Ll~~Ia~ 152 (592)
|++|+|++|+|||+|+..+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999988764
No 500
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.74 E-value=0.49 Score=51.52 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=26.0
Q ss_pred cceeeeecCCCCChhHHHHHHHHHHHhcCCCeEEEEEE
Q psy3765 130 GQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167 (592)
Q Consensus 130 GQR~~I~g~~g~GKT~Ll~~Ia~~i~~~~~~~~~I~~l 167 (592)
..-++|.||+|+|||++++.+++.+ ++.++.+-
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l-----~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL-----GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT-----TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEe
Confidence 3679999999999999999998865 34455553
Done!