Your job contains 1 sequence.
>psy3765
KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI
RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESKENITGRI
IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR
SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS
GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM
EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFF
IKRTIPVEKNLLKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGD
GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFA
LLKIKKVNVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI
ASTFDEPALSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARKY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3765
(592 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CBU_2086 - symbol:CBU_2086 "transcription termin... 1326 2.3e-135 1
UNIPROTKB|Q9KV50 - symbol:rho "Transcription termination ... 1283 8.1e-131 1
TIGR_CMR|VC_0307 - symbol:VC_0307 "transcription terminat... 1283 8.1e-131 1
UNIPROTKB|P0AG30 - symbol:rho "transcription termination ... 1270 1.9e-129 1
TIGR_CMR|SO_0405 - symbol:SO_0405 "transcription terminat... 1250 2.6e-127 1
TIGR_CMR|CPS_0176 - symbol:CPS_0176 "transcription termin... 1244 1.1e-126 1
TIGR_CMR|GSU_3108 - symbol:GSU_3108 "transcription termin... 1221 3.0e-124 1
TIGR_CMR|SPO_3894 - symbol:SPO_3894 "transcription termin... 1135 3.9e-115 1
TIGR_CMR|ECH_0200 - symbol:ECH_0200 "transcription termin... 1101 1.6e-111 1
TIGR_CMR|ECH_0994 - symbol:ECH_0994 "transcription termin... 1101 1.6e-111 1
TIGR_CMR|APH_0064 - symbol:APH_0064 "transcription termin... 1094 8.7e-111 1
TIGR_CMR|APH_1071 - symbol:APH_1071 "transcription termin... 1094 8.7e-111 1
TIGR_CMR|NSE_0067 - symbol:NSE_0067 "transcription termin... 1057 7.2e-107 1
TIGR_CMR|CHY_0130 - symbol:CHY_0130 "transcription termin... 1052 2.5e-106 1
TIGR_CMR|BA_5575 - symbol:BA_5575 "transcription terminat... 1041 3.6e-105 1
TIGR_CMR|CJE_1292 - symbol:CJE_1292 "transcription termin... 1028 8.6e-104 1
UNIPROTKB|P66028 - symbol:rho "Transcription termination ... 892 2.2e-89 1
TIGR_CMR|CPS_0717 - symbol:CPS_0717 "transcription termin... 603 9.3e-59 1
UNIPROTKB|Q4KG66 - symbol:fliI "Flagellum-specific ATP sy... 220 4.6e-15 1
UNIPROTKB|Q48GE5 - symbol:fliI "Flagellum-specific ATP sy... 217 1.0e-14 1
UNIPROTKB|E1WFT1 - symbol:ssaN "Type III secretion ATP sy... 207 1.2e-13 1
UNIPROTKB|B7UMA6 - symbol:escN "Translocator EscN" specie... 199 9.9e-13 1
TIGR_CMR|SO_3225 - symbol:SO_3225 "flagellum-specific ATP... 198 1.3e-12 1
UNIPROTKB|P52612 - symbol:fliI "flagellum-specific ATP sy... 198 1.3e-12 1
UNIPROTKB|Q485L8 - symbol:fliI "Flagellum-specific ATP sy... 196 2.2e-12 1
UNIPROTKB|Q48M23 - symbol:hrcN "Type III secretion compon... 196 2.2e-12 1
TIGR_CMR|CPS_1505 - symbol:CPS_1505 "flagellum-specific A... 196 2.2e-12 1
TIGR_CMR|CJE_0188 - symbol:CJE_0188 "flagellum-specific A... 193 4.9e-12 1
UNIPROTKB|Q3BYK0 - symbol:hrcN "HrcN protein" species:316... 190 9.6e-12 1
TIGR_CMR|CHY_0996 - symbol:CHY_0996 "flagellum-specific A... 189 1.2e-11 1
UNIPROTKB|O34171 - symbol:fliI "Flagellum-specific ATP sy... 186 3.1e-11 1
NCBI_NP|NP_353584.1 - symbol:fliI "flagellum-specificATPs... 186 3.1e-11 1
UNIPROTKB|O07025 - symbol:fliI "Flagellum-specific ATP sy... 178 2.0e-10 1
UNIPROTKB|Q6XVW8 - symbol:spa47 "Spa47" species:623 "Shig... 177 2.5e-10 1
TIGR_CMR|SPO_0183 - symbol:SPO_0183 "H+-transporting two-... 176 3.5e-10 1
UNIPROTKB|Q9KQ71 - symbol:VC_2130 "Flagellum-specific ATP... 175 4.3e-10 1
TIGR_CMR|VC_2130 - symbol:VC_2130 "flagellum-specific ATP... 175 4.3e-10 1
UNIPROTKB|Q9Z7J8 - symbol:yscN "YopN" species:83558 "Chla... 175 4.4e-10 1
TIGR_CMR|BA_1681 - symbol:BA_1681 "flagellum-specific ATP... 174 5.5e-10 1
TIGR_CMR|GSU_0413 - symbol:GSU_0413 "flagellum-specific A... 158 3.3e-08 1
TIGR_CMR|CJE_0102 - symbol:CJE_0102 "ATP synthase F1, bet... 134 1.6e-05 1
TIGR_CMR|DET_0564 - symbol:DET_0564 "ATP synthase F1, bet... 131 3.3e-05 1
TIGR_CMR|CHY_2547 - symbol:CHY_2547 "ATP synthase F1, alp... 128 8.0e-05 1
TIGR_CMR|BA_5547 - symbol:BA_5547 "ATP synthase F1, beta ... 125 0.00015 1
>TIGR_CMR|CBU_2086 [details] [associations]
symbol:CBU_2086 "transcription termination factor Rho"
species:227377 "Coxiella burnetii RSA 493" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 GO:GO:0003723 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 HOGENOM:HOG000076952 KO:K03628
SUPFAM:SSF68912 TIGRFAMs:TIGR00767 OMA:FGFLRAP ProtClustDB:PRK09376
HSSP:P03002 RefSeq:NP_821056.1 ProteinModelPortal:Q83A25 SMR:Q83A25
PRIDE:Q83A25 GeneID:1209999 KEGG:cbu:CBU_2086 PATRIC:17932919
BioCyc:CBUR227377:GJ7S-2052-MONOMER Uniprot:Q83A25
Length = 418
Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
Identities = 259/361 (71%), Positives = 303/361 (83%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD V G+IR
Sbjct: 44 KKGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIID 122
PK ERYFALL++ ++N EKPE SK + LF+N E S E+IT RIID
Sbjct: 104 PKESERYFALLQVNEINLEKPEASKGKILFENLTPLFPNEQIRMETGNGSTEDITARIID 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
LI+PIGKGQRGL+V+ PK+GK+++LQ+IAH+ITTNH E ++IV+LIDERPEEVTEM RSV
Sbjct: 164 LISPIGKGQRGLIVSPPKAGKTMMLQNIAHSITTNHPECVLIVLLIDERPEEVTEMDRSV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIPASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NALQRPKRFFGAARN+EEGGSLTIIATAL+ETGS+MDDVIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNMEI 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLFFIK 362
HL+RR+AEKR +PAIN+N+SGTRREEL++ D LQK+W+LRK+L+ M S F I
Sbjct: 344 HLDRRIAEKRTFPAININRSGTRREELMMPQDVLQKVWILRKILHP--MDELAASEFLID 401
Query: 363 R 363
R
Sbjct: 402 R 402
Score = 340 (124.7 bits), Expect = 1.8e-70, Sum P(3) = 1.8e-70
Identities = 69/129 (53%), Positives = 90/129 (69%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LK +P ++ Q ++LE V R RKQ+++FA+ K K GE IFGDG LE+L DGFG
Sbjct: 6 LKQKSVPELMQIAQEMNLEY--VSRTRKQDIIFAVLKAHAKKGEDIFGDGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS S+Y+A DDIY+SPSQIRRFNL TG G+IR PK ERYFALL++ ++N+
Sbjct: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRPPKESERYFALLQVNEINLEK 123
Query: 492 PKSGKSIIL 500
P++ K IL
Sbjct: 124 PEASKGKIL 132
Score = 239 (89.2 bits), Expect = 1.8e-70, Sum P(3) = 1.8e-70
Identities = 44/60 (73%), Positives = 56/60 (93%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
V+ PK+GK+++LQ+IAH+ITTNH E ++IV+LIDERPEEVTEM RSV+GEV+ASTFDEPA
Sbjct: 177 VSPPKAGKTMMLQNIAHSITTNHPECVLIVLLIDERPEEVTEMDRSVKGEVVASTFDEPA 236
Score = 181 (68.8 bits), Expect = 1.8e-70, Sum P(3) = 1.8e-70
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIPASGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 264 LDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAAR 305
>UNIPROTKB|Q9KV50 [details] [associations]
symbol:rho "Transcription termination factor Rho"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006353 "DNA-dependent transcription, termination"
evidence=ISS] HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 KO:K03628 SUPFAM:SSF68912
TIGRFAMs:TIGR00767 OMA:FGFLRAP ProtClustDB:PRK09376 HSSP:P03002
PIR:E82338 RefSeq:NP_229962.1 ProteinModelPortal:Q9KV50 SMR:Q9KV50
DNASU:2614977 GeneID:2614977 KEGG:vch:VC0307 PATRIC:20079659
Uniprot:Q9KV50
Length = 419
Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
Identities = 244/350 (69%), Positives = 298/350 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIID 122
PK GERYFALLK+ VN ++P+ ++N+ LF+N ER S E+IT R++D
Sbjct: 104 PKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 344 HLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGET 393
Score = 334 (122.6 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 72/141 (51%), Positives = 94/141 (66%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN P + ++ IL +T
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDRPDNARNKIL---FENLT 137
Query: 509 TNHSEAIMIVMLIDERPEEVT 529
H+ M++ + E++T
Sbjct: 138 PLHANERMVMERGNGSTEDIT 158
Score = 222 (83.2 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 41/60 (68%), Positives = 54/60 (90%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Score = 175 (66.7 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 34/42 (80%), Positives = 38/42 (90%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAAR 305
>TIGR_CMR|VC_0307 [details] [associations]
symbol:VC_0307 "transcription termination factor Rho"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 KO:K03628 SUPFAM:SSF68912
TIGRFAMs:TIGR00767 OMA:FGFLRAP ProtClustDB:PRK09376 HSSP:P03002
PIR:E82338 RefSeq:NP_229962.1 ProteinModelPortal:Q9KV50 SMR:Q9KV50
DNASU:2614977 GeneID:2614977 KEGG:vch:VC0307 PATRIC:20079659
Uniprot:Q9KV50
Length = 419
Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
Identities = 244/350 (69%), Positives = 298/350 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIID 122
PK GERYFALLK+ VN ++P+ ++N+ LF+N ER S E+IT R++D
Sbjct: 104 PKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L APIGKGQRGL+VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMT 352
HL R++AEKRV+PAI+ N+SGTRREELL + D+LQK+W+LRK+++ + T
Sbjct: 344 HLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGET 393
Score = 334 (122.6 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 72/141 (51%), Positives = 94/141 (66%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + ++ RLRKQ+++FAI K K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 LGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAHAIT 508
+SPSQIRRFNL TG G+IR PK GERYFALLK+ VN P + ++ IL +T
Sbjct: 81 VSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDRPDNARNKIL---FENLT 137
Query: 509 TNHSEAIMIVMLIDERPEEVT 529
H+ M++ + E++T
Sbjct: 138 PLHANERMVMERGNGSTEDIT 158
Score = 222 (83.2 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 41/60 (68%), Positives = 54/60 (90%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I +NH E +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Score = 175 (66.7 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 34/42 (80%), Positives = 38/42 (90%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAAR 305
>UNIPROTKB|P0AG30 [details] [associations]
symbol:rho "transcription termination factor Rho monomer;
polarity suppressor" species:83333 "Escherichia coli K-12"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA;IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IDA] HAMAP:MF_01884
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR004665
InterPro:IPR011112 InterPro:IPR011113 InterPro:IPR011129
Pfam:PF00006 Pfam:PF07497 Pfam:PF07498 SMART:SM00357 SMART:SM00382
SMART:SM00959 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:M87049 GO:GO:0008186 GO:GO:0006353 EMBL:J01673
HOGENOM:HOG000076952 KO:K03628 SUPFAM:SSF68912 TIGRFAMs:TIGR00767
EMBL:M12779 EMBL:S75640 EMBL:L34404 PIR:A03530 RefSeq:NP_418230.1
RefSeq:YP_491656.1 PDB:1A62 PDB:1A63 PDB:1A8V PDB:1PV4 PDB:1PVO
PDB:1XPO PDB:1XPR PDB:1XPU PDB:2A8V PDB:2HT1 PDB:3ICE PDBsum:1A62
PDBsum:1A63 PDBsum:1A8V PDBsum:1PV4 PDBsum:1PVO PDBsum:1XPO
PDBsum:1XPR PDBsum:1XPU PDBsum:2A8V PDBsum:2HT1 PDBsum:3ICE
ProteinModelPortal:P0AG30 SMR:P0AG30 DIP:DIP-35363N IntAct:P0AG30
MINT:MINT-1222551 PaxDb:P0AG30 PRIDE:P0AG30
EnsemblBacteria:EBESCT00000002897 EnsemblBacteria:EBESCT00000015408
GeneID:12930703 GeneID:948297 KEGG:ecj:Y75_p3392 KEGG:eco:b3783
PATRIC:32123057 EchoBASE:EB0838 EcoGene:EG10845 eggNOG:COG1158
OMA:FGFLRAP ProtClustDB:PRK09376 BioCyc:EcoCyc:EG10845-MONOMER
BioCyc:ECOL316407:JW3756-MONOMER EvolutionaryTrace:P0AG30
Genevestigator:P0AG30 Uniprot:P0AG30
Length = 419
Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
Identities = 241/347 (69%), Positives = 296/347 (85%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFGDG LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRFNL TGD + G+IR
Sbjct: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE ++N+ LF+N ER S E++T R++D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIG+GQRGL+VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V
Sbjct: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEV+ASTFDEPA RHVQVAEMV+EKAKRLVE KKDVIILLDSITRLARAYNTV+PASGK
Sbjct: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARN+EEGGSLTIIATALI+TGS+MD+VIYEEFKGTGNME+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
HL R++AEKRV+PAI+ N+SGTR+EELL ++LQK+W+LRK+++ +
Sbjct: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390
Score = 338 (124.0 bits), Expect = 3.4e-67, Sum P(3) = 3.4e-67
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
++ + ++ R+RKQ+++FAI K+ K GE IFGDG LE+L DGFGFLRS S+Y+A DDI
Sbjct: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
Y+SPSQIRRFNL TG G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132
Score = 216 (81.1 bits), Expect = 3.4e-67, Sum P(3) = 3.4e-67
Identities = 40/60 (66%), Positives = 53/60 (88%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I NH + +++V+LIDERPEEVTEMQR V+GEV+ASTFDEPA
Sbjct: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236
Score = 175 (66.7 bits), Expect = 3.4e-67, Sum P(3) = 3.4e-67
Identities = 34/42 (80%), Positives = 38/42 (90%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+PASGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAAR 305
>TIGR_CMR|SO_0405 [details] [associations]
symbol:SO_0405 "transcription termination factor Rho"
species:211586 "Shewanella oneidensis MR-1" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 HOGENOM:HOG000076952 KO:K03628
SUPFAM:SSF68912 TIGRFAMs:TIGR00767 OMA:FGFLRAP ProtClustDB:PRK09376
HSSP:P03002 RefSeq:NP_716043.1 ProteinModelPortal:Q8EJQ7 SMR:Q8EJQ7
GeneID:1168282 KEGG:son:SO_0405 PATRIC:23520513 Uniprot:Q8EJQ7
Length = 421
Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
Identities = 243/344 (70%), Positives = 289/344 (84%)
Query: 3 KIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRV 62
K GE IFG G LE+L DGFGFLRS +Y+A DDIY+SPSQIRRFN+ TGD + G+IR
Sbjct: 44 KSGEDIFGGGVLEILQDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRP 103
Query: 63 PKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIID 122
PK GERYFALLK+ +VN +KPE S+N+ LF+N ER S E+IT RI+D
Sbjct: 104 PKEGERYFALLKVNEVNFDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILD 163
Query: 123 LIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSV 182
L +PIGKGQRGL+VA PK+GK+++LQ+IA +IT N+ E +++V+LIDERPEEVTEMQR V
Sbjct: 164 LCSPIGKGQRGLIVAPPKAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLV 223
Query: 183 RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGK 242
+GEVIASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK
Sbjct: 224 KGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK 283
Query: 243 VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEV 302
VLTGGVD+NAL RPKRFFGAARNIE GGSLTIIATAL++TGS+MD+VIYEEFKGTGN E+
Sbjct: 284 VLTGGVDANALHRPKRFFGAARNIENGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQEL 343
Query: 303 HLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
HL R+ AEKRV+PAI+ N+SGTRREE L D+LQK+W+LRK+L
Sbjct: 344 HLSRKAAEKRVFPAIDFNRSGTRREEKLTNPDELQKMWILRKIL 387
Score = 323 (118.8 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 72/158 (45%), Positives = 102/158 (64%)
Query: 372 LKDACMPLVLAETQTIDLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFG 431
LKD + +++ + + LE ++ R RKQ+++F+I K K GE IFG G LE+L DGFG
Sbjct: 6 LKDTPISDLVSLAENMKLE--NMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQDGFG 63
Query: 432 FLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVAS 491
FLRS +Y+A DDIY+SPSQIRRFN+ TG G+IR PK GERYFALLK+ +VN
Sbjct: 64 FLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVNFDK 123
Query: 492 PKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 529
P++ ++ IL +T H+E M + + E++T
Sbjct: 124 PENSRNKIL---FENLTPLHAEERMRMERGNGSTEDIT 158
Score = 219 (82.2 bits), Expect = 9.7e-29, Sum P(2) = 9.7e-29
Identities = 42/60 (70%), Positives = 54/60 (90%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +IT N+ E +++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Score = 173 (66.0 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 34/42 (80%), Positives = 38/42 (90%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGKVLTGGVD+NAL RPKRFFGAAR
Sbjct: 264 LDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAAR 305
>TIGR_CMR|CPS_0176 [details] [associations]
symbol:CPS_0176 "transcription termination factor Rho"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 HOGENOM:HOG000076952 KO:K03628
SUPFAM:SSF68912 TIGRFAMs:TIGR00767 eggNOG:COG1158 OMA:FGFLRAP
ProtClustDB:PRK09376 RefSeq:YP_266944.1 ProteinModelPortal:Q48AG9
SMR:Q48AG9 STRING:Q48AG9 GeneID:3518976 KEGG:cps:CPS_0176
PATRIC:21463769 BioCyc:CPSY167879:GI48-279-MONOMER Uniprot:Q48AG9
Length = 419
Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
Identities = 237/342 (69%), Positives = 294/342 (85%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
IFG G LE+L DGFGFLRS S+Y+A DDIY+SPSQIRRF++ TGD ++G+IR PK GE
Sbjct: 49 IFGGGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFSMRTGDTIQGKIRSPKKGE 108
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIIDLIAPI 127
RYFALLK+ +VN ++PE ++N+ LF+N R S E+IT RI+DL +PI
Sbjct: 109 RYFALLKVTEVNFDRPENTRNKILFENLTPIHPTDRFSLARGNGSTEDITARILDLASPI 168
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
GKGQRGL+VA PK+GK+++LQ+IA +I N+ +A ++V+LIDERPEEVTEMQR V+GEVI
Sbjct: 169 GKGQRGLIVAPPKAGKTLLLQNIAQSIAHNNPDAELMVLLIDERPEEVTEMQRLVKGEVI 228
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
ASTFDEPA RHVQVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTVIP+SGK+LTGG
Sbjct: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKILTGG 288
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
VD+NAL RPKRFFGAARNIEEGGSLTIIATAL+ETGS+MD+VIYEEFKGTGNME+HL R+
Sbjct: 289 VDANALHRPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELHLSRK 348
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++EKRV+PAIN+N+SGTRREEL+ + D+LQK+W+LRK+++ +
Sbjct: 349 ISEKRVFPAININRSGTRREELITKPDELQKMWILRKIVHEM 390
Score = 300 (110.7 bits), Expect = 1.6e-58, Sum P(3) = 1.6e-58
Identities = 59/112 (52%), Positives = 82/112 (73%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
+++ ++ R RKQ+++FAI K + IFG G LE+L DGFGFLRS S+Y+A DDIY
Sbjct: 21 MKLENLARTRKQDIIFAILKAHAEGDNDIFGGGVLEILQDGFGFLRSADSSYLAGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRF++ TG +G+IR PK GERYFALLK+ +VN P++ ++ IL
Sbjct: 81 VSPSQIRRFSMRTGDTIQGKIRSPKKGERYFALLKVTEVNFDRPENTRNKIL 132
Score = 209 (78.6 bits), Expect = 1.6e-58, Sum P(3) = 1.6e-58
Identities = 41/60 (68%), Positives = 53/60 (88%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+++LQ+IA +I N+ +A ++V+LIDERPEEVTEMQR V+GEVIASTFDEPA
Sbjct: 177 VAPPKAGKTLLLQNIAQSIAHNNPDAELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPA 236
Score = 172 (65.6 bits), Expect = 1.6e-58, Sum P(3) = 1.6e-58
Identities = 33/42 (78%), Positives = 38/42 (90%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTVIP+SGK+LTGGVD+NAL RPKRFFGAAR
Sbjct: 264 LDSITRLARAYNTVIPSSGKILTGGVDANALHRPKRFFGAAR 305
>TIGR_CMR|GSU_3108 [details] [associations]
symbol:GSU_3108 "transcription termination factor Rho"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 HOGENOM:HOG000076952 KO:K03628
SUPFAM:SSF68912 TIGRFAMs:TIGR00767 OMA:FGFLRAP ProtClustDB:PRK09376
RefSeq:NP_954149.1 HSSP:P03002 ProteinModelPortal:Q748A7 SMR:Q748A7
GeneID:2688442 KEGG:gsu:GSU3108 PATRIC:22029071
BioCyc:GSUL243231:GH27-3092-MONOMER Uniprot:Q748A7
Length = 415
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 230/351 (65%), Positives = 296/351 (84%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+T+ IFG+G LE LPDGFGFLR+ NY+ DDIY+SPSQIRRFNLHTGD V G+I
Sbjct: 42 QTEKNGMIFGEGVLECLPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVSGQI 101
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRI 120
R PK GERYFALLK++ VN E PE+++++ LFDN E + +N++ R+
Sbjct: 102 RPPKEGERYFALLKVETVNFEPPEVARDKILFDNLTPLYPDEKLKLET---APDNMSMRV 158
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
++L++PIGKGQRGL+VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQR
Sbjct: 159 MELVSPIGKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQR 218
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
SV+GEV++STFDEPA RHVQVAEMV+EKAKRLVE K+DV+ILLDSITRLARAYNTV+P S
Sbjct: 219 SVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPS 278
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GK+LTGGVD+NALQ+PKRFFGAARNIEEGGSLTIIA+AL++TGS+MD+VI+EEFKGTGNM
Sbjct: 279 GKILTGGVDANALQKPKRFFGAARNIEEGGSLTIIASALVDTGSKMDEVIFEEFKGTGNM 338
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTM 351
EVHL+R+L EKR +PAI++NKSGTR+EELL++ L +IW+LRK+L+ + +
Sbjct: 339 EVHLDRKLVEKRTFPAIDINKSGTRKEELLVEKSALNRIWILRKVLHPMNV 389
Score = 318 (117.0 bits), Expect = 3.3e-64, Sum P(3) = 3.3e-64
Identities = 63/112 (56%), Positives = 77/112 (68%)
Query: 389 LEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIY 448
L + LRKQ+L+FAI +T+ IFG+G LE LPDGFGFLR+ NY+ DDIY
Sbjct: 21 LNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPDGFGFLRAPDYNYLPGPDDIY 80
Query: 449 LSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIIL 500
+SPSQIRRFNLHTG G+IR PK GERYFALLK++ VN P+ + IL
Sbjct: 81 VSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVNFEPPEVARDKIL 132
Score = 215 (80.7 bits), Expect = 3.3e-64, Sum P(3) = 3.3e-64
Identities = 39/60 (65%), Positives = 54/60 (90%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++++Q+IA++I NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 174 VAPPRTGKTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPA 233
Score = 170 (64.9 bits), Expect = 3.3e-64, Sum P(3) = 3.3e-64
Identities = 32/42 (76%), Positives = 38/42 (90%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNTV+P SGK+LTGGVD+NALQ+PKRFFGAAR
Sbjct: 261 LDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGAAR 302
>TIGR_CMR|SPO_3894 [details] [associations]
symbol:SPO_3894 "transcription termination factor Rho"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006353 "DNA-dependent
transcription, termination" evidence=ISS] HAMAP:MF_01884
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR004665
InterPro:IPR011112 InterPro:IPR011113 InterPro:IPR011129
Pfam:PF00006 Pfam:PF07497 Pfam:PF07498 SMART:SM00357 SMART:SM00382
SMART:SM00959 GO:GO:0005524 GO:GO:0006355 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0004386
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008186
GO:GO:0006353 HOGENOM:HOG000076952 KO:K03628 SUPFAM:SSF68912
TIGRFAMs:TIGR00767 OMA:FGFLRAP ProtClustDB:PRK09376
RefSeq:YP_169082.1 ProteinModelPortal:Q5LLM8 SMR:Q5LLM8
GeneID:3196235 KEGG:sil:SPO3894 PATRIC:23381295 Uniprot:Q5LLM8
Length = 423
Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
Identities = 224/361 (62%), Positives = 286/361 (79%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G I GDG LEVL DGFGFLRS +NY+ DDIY+SP IR+++L TGD VEGEI+ P
Sbjct: 51 GWTIGGDGVLEVLQDGFGFLRSPEANYLPGPDDIYVSPDMIRQYSLRTGDTVEGEIKAPD 110
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIIDLI 124
+ ERYFAL + +N E PE ++++ FDN E + ++ + R+IDL+
Sbjct: 111 DSERYFALTNVTMINFEDPEKARHKIAFDNLTPLYPDERLKMEIEDPTIKDRSARVIDLV 170
Query: 125 APIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRG 184
APIGKGQR L+VA P++GK++ILQ+IAH+I NH E +IV+LIDERPEEVT+MQRSV+G
Sbjct: 171 APIGKGQRSLIVAPPRTGKTVILQNIAHSIERNHPECYLIVLLIDERPEEVTDMQRSVKG 230
Query: 185 EVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVL 244
EV++STFDEPA RHV V+EMV+EKAKRLVE K+DV+ILLDSITRL RA+NTV+P+SGKVL
Sbjct: 231 EVVSSTFDEPATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVL 290
Query: 245 TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHL 304
TGGVD+NALQRPKRFFGAARNIEEGGSLTIIATALI+TGSRMD+VI+EEFKGTGN E+ L
Sbjct: 291 TGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELVL 350
Query: 305 ERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL-TMTSFTVSLFFIKR 363
+R++A+KRV+PAI++ KSGTR+E+LL+ LQK +VLR++L + T + L +K+
Sbjct: 351 DRKIADKRVFPAIDILKSGTRKEDLLVDKGDLQKTFVLRRILNPMGTTDAIEFLLSKLKQ 410
Query: 364 T 364
T
Sbjct: 411 T 411
Score = 265 (98.3 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 50/109 (45%), Positives = 71/109 (65%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+LE+ + +RK E+MF I +++ G I GDG LEVL DGFGFLRS +NY+ DDI
Sbjct: 25 ELEIENASTMRKGEMMFQILRERADEGWTIGGDGVLEVLQDGFGFLRSPEANYLPGPDDI 84
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
Y+SP IR+++L TG +GEI+ P + ERYFAL + +N P+ +
Sbjct: 85 YVSPDMIRQYSLRTGDTVEGEIKAPDDSERYFALTNVTMINFEDPEKAR 133
Score = 227 (85.0 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 42/60 (70%), Positives = 54/60 (90%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK++ILQ+IAH+I NH E +IV+LIDERPEEVT+MQRSV+GEV++STFDEPA
Sbjct: 182 VAPPRTGKTVILQNIAHSIERNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPA 241
Score = 169 (64.5 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 32/42 (76%), Positives = 38/42 (90%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RA+NTV+P+SGKVLTGGVD+NALQRPKRFFGAAR
Sbjct: 269 LDSITRLGRAFNTVVPSSGKVLTGGVDANALQRPKRFFGAAR 310
>TIGR_CMR|ECH_0200 [details] [associations]
symbol:ECH_0200 "transcription termination factor Rho"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 RefSeq:YP_507024.1 RefSeq:YP_507781.1
ProteinModelPortal:P0CH92 SMR:P0CH92 GeneID:3927381 GeneID:3927646
KEGG:ech:ECH_0200 KEGG:ech:ECH_0994 PATRIC:20575937
HOGENOM:HOG000076952 KO:K03628 SUPFAM:SSF68912 TIGRFAMs:TIGR00767
Uniprot:P0CH92
Length = 422
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 217/348 (62%), Positives = 276/348 (79%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G G G +E+L DGFGFLRS +NY AS DD+Y+S QI++FNL TGD V GEIR P
Sbjct: 47 GGAAIGGGVVEILSDGFGFLRSPEANYAASGDDVYISAGQIKKFNLRTGDIVSGEIRAPS 106
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERN--IE-SKENITGRII 121
ERYF L+K +N + FD+ E N I SK++I+ R+I
Sbjct: 107 EKERYFTLVKAHSINFTDMAKLQRYVHFDDLIPLYPEERILLECNDPISVSKKDISMRVI 166
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP+GKGQR L+VA P++GK+IILQ IAH+I+ NH + +IV+LI ERPEEVT+M RS
Sbjct: 167 DIVAPLGKGQRALIVAPPRAGKTIILQQIAHSISVNHPDIELIVLLIGERPEEVTDMCRS 226
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV++STFDEP YRHVQ+AE+V+EKAKR+VE KK+V+ILLDSITRLARAYN+VIP+SG
Sbjct: 227 VKGEVVSSTFDEPGYRHVQLAEIVIEKAKRMVEHKKNVVILLDSITRLARAYNSVIPSSG 286
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVDSNALQRPKRFFGAARNIE GGSLTIIATALIETGS+MD+VI+EEFKGTGN E
Sbjct: 287 KVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCE 346
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+ L+R++++KRVYPAI+++KSGTR+E++LI L+K+W+LR+LL S+
Sbjct: 347 IILDRKISDKRVYPAIDISKSGTRKEDMLIDSVCLKKVWLLRRLLSSM 394
Score = 254 (94.5 bits), Expect = 5.0e-51, Sum P(3) = 5.0e-51
Identities = 51/101 (50%), Positives = 65/101 (64%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL V S R+ KQE++F + KK G G G +E+L DGFGFLRS +NY AS DD+
Sbjct: 21 DLGVVSNGRMLKQEIIFHLMKKVVSDGGAAIGGGVVEILSDGFGFLRSPEANYAASGDDV 80
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
Y+S QI++FNL TG + GEIR P ERYF L+K +N
Sbjct: 81 YISAGQIKKFNLRTGDIVSGEIRAPSEKERYFTLVKAHSIN 121
Score = 205 (77.2 bits), Expect = 5.0e-51, Sum P(3) = 5.0e-51
Identities = 39/59 (66%), Positives = 51/59 (86%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEP 547
VA P++GK+IILQ IAH+I+ NH + +IV+LI ERPEEVT+M RSV+GEV++STFDEP
Sbjct: 181 VAPPRAGKTIILQQIAHSISVNHPDIELIVLLIGERPEEVTDMCRSVKGEVVSSTFDEP 239
Score = 177 (67.4 bits), Expect = 5.0e-51, Sum P(3) = 5.0e-51
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN+VIP+SGKVLTGGVDSNALQRPKRFFGAAR
Sbjct: 268 LDSITRLARAYNSVIPSSGKVLTGGVDSNALQRPKRFFGAAR 309
>TIGR_CMR|ECH_0994 [details] [associations]
symbol:ECH_0994 "transcription termination factor Rho"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 RefSeq:YP_507024.1 RefSeq:YP_507781.1
ProteinModelPortal:P0CH92 SMR:P0CH92 GeneID:3927381 GeneID:3927646
KEGG:ech:ECH_0200 KEGG:ech:ECH_0994 PATRIC:20575937
HOGENOM:HOG000076952 KO:K03628 SUPFAM:SSF68912 TIGRFAMs:TIGR00767
Uniprot:P0CH92
Length = 422
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 217/348 (62%), Positives = 276/348 (79%)
Query: 5 GERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPK 64
G G G +E+L DGFGFLRS +NY AS DD+Y+S QI++FNL TGD V GEIR P
Sbjct: 47 GGAAIGGGVVEILSDGFGFLRSPEANYAASGDDVYISAGQIKKFNLRTGDIVSGEIRAPS 106
Query: 65 NGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERN--IE-SKENITGRII 121
ERYF L+K +N + FD+ E N I SK++I+ R+I
Sbjct: 107 EKERYFTLVKAHSINFTDMAKLQRYVHFDDLIPLYPEERILLECNDPISVSKKDISMRVI 166
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP+GKGQR L+VA P++GK+IILQ IAH+I+ NH + +IV+LI ERPEEVT+M RS
Sbjct: 167 DIVAPLGKGQRALIVAPPRAGKTIILQQIAHSISVNHPDIELIVLLIGERPEEVTDMCRS 226
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V+GEV++STFDEP YRHVQ+AE+V+EKAKR+VE KK+V+ILLDSITRLARAYN+VIP+SG
Sbjct: 227 VKGEVVSSTFDEPGYRHVQLAEIVIEKAKRMVEHKKNVVILLDSITRLARAYNSVIPSSG 286
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
KVLTGGVDSNALQRPKRFFGAARNIE GGSLTIIATALIETGS+MD+VI+EEFKGTGN E
Sbjct: 287 KVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCE 346
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
+ L+R++++KRVYPAI+++KSGTR+E++LI L+K+W+LR+LL S+
Sbjct: 347 IILDRKISDKRVYPAIDISKSGTRKEDMLIDSVCLKKVWLLRRLLSSM 394
Score = 254 (94.5 bits), Expect = 5.0e-51, Sum P(3) = 5.0e-51
Identities = 51/101 (50%), Positives = 65/101 (64%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
DL V S R+ KQE++F + KK G G G +E+L DGFGFLRS +NY AS DD+
Sbjct: 21 DLGVVSNGRMLKQEIIFHLMKKVVSDGGAAIGGGVVEILSDGFGFLRSPEANYAASGDDV 80
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVN 488
Y+S QI++FNL TG + GEIR P ERYF L+K +N
Sbjct: 81 YISAGQIKKFNLRTGDIVSGEIRAPSEKERYFTLVKAHSIN 121
Score = 205 (77.2 bits), Expect = 5.0e-51, Sum P(3) = 5.0e-51
Identities = 39/59 (66%), Positives = 51/59 (86%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEP 547
VA P++GK+IILQ IAH+I+ NH + +IV+LI ERPEEVT+M RSV+GEV++STFDEP
Sbjct: 181 VAPPRAGKTIILQQIAHSISVNHPDIELIVLLIGERPEEVTDMCRSVKGEVVSSTFDEP 239
Score = 177 (67.4 bits), Expect = 5.0e-51, Sum P(3) = 5.0e-51
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN+VIP+SGKVLTGGVDSNALQRPKRFFGAAR
Sbjct: 268 LDSITRLARAYNSVIPSSGKVLTGGVDSNALQRPKRFFGAAR 309
>TIGR_CMR|APH_0064 [details] [associations]
symbol:APH_0064 "transcription termination factor Rho"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 HOGENOM:HOG000076952 KO:K03628
SUPFAM:SSF68912 TIGRFAMs:TIGR00767 eggNOG:COG1158
ProtClustDB:PRK09376 RefSeq:YP_504697.1 ProteinModelPortal:Q2GLQ4
SMR:Q2GLQ4 STRING:Q2GLQ4 GeneID:3930567 KEGG:aph:APH_0064
PATRIC:20948682 OMA:HVRVANI BioCyc:APHA212042:GHPM-102-MONOMER
Uniprot:Q2GLQ4
Length = 452
Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
Identities = 215/343 (62%), Positives = 273/343 (79%)
Query: 10 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERY 69
G G +E LPDGFGFLRS +NY ASSDDIY+S QI++FNL TGD V GEIR P + ERY
Sbjct: 82 GGGVVETLPDGFGFLRSAEANYAASSDDIYISAGQIKKFNLRTGDIVSGEIRAPGDKERY 141
Query: 70 FALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNI---ESKENITGRIIDLIAP 126
F L+K +N + + FD+ E N K++I+ R ID+IAP
Sbjct: 142 FTLVKAYSINYTEIGKLQRYVHFDDLIPVYPEDRILLECNKGAGNEKKDISMRAIDIIAP 201
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
+GKGQR L+VA P+ GK++ILQ IAH+I NH +IV+LI ERPEEVT+M RSV+GEV
Sbjct: 202 LGKGQRALIVAPPRVGKTVILQQIAHSIAVNHPNMELIVLLIGERPEEVTDMLRSVKGEV 261
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPAYRHVQ+AE+V+E+AKR+VE KK+V+ILLDSITRLARAYN V+P+SGKVLTG
Sbjct: 262 VSSTFDEPAYRHVQLAEIVIERAKRMVEHKKEVVILLDSITRLARAYNEVMPSSGKVLTG 321
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNALQRPKRFFGAARNIE GGSLTIIATALIETGS+MD+VI+EEFKGTGN E+ L+R
Sbjct: 322 GVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCEIILDR 381
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++A+KR+YPAI+++KSGTR+E++LI+ L+K+W+LR+LL ++
Sbjct: 382 KIADKRIYPAIDISKSGTRKEDMLIESALLKKVWLLRRLLSAM 424
Score = 254 (94.5 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 57/118 (48%), Positives = 73/118 (61%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V S R+ KQE++F + K+ G G G +E LPDGFGFLRS +NY ASSDDI
Sbjct: 51 ELGVVSNGRMLKQEIIFQLMKRVISEGGVAIGGGVVETLPDGFGFLRSAEANYAASSDDI 110
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
Y+S QI++FNL TG + GEIR P + ERYF L+K +N + GK LQ H
Sbjct: 111 YISAGQIKKFNLRTGDIVSGEIRAPGDKERYFTLVKAYSINYT--EIGK---LQRYVH 163
Score = 203 (76.5 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P+ GK++ILQ IAH+I NH +IV+LI ERPEEVT+M RSV+GEV++STFDEPA
Sbjct: 211 VAPPRVGKTVILQQIAHSIAVNHPNMELIVLLIGERPEEVTDMLRSVKGEVVSSTFDEPA 270
Score = 172 (65.6 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 34/42 (80%), Positives = 38/42 (90%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN V+P+SGKVLTGGVDSNALQRPKRFFGAAR
Sbjct: 298 LDSITRLARAYNEVMPSSGKVLTGGVDSNALQRPKRFFGAAR 339
>TIGR_CMR|APH_1071 [details] [associations]
symbol:APH_1071 "transcription termination factor Rho"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 HOGENOM:HOG000076952 KO:K03628
SUPFAM:SSF68912 TIGRFAMs:TIGR00767 eggNOG:COG1158 OMA:FGFLRAP
ProtClustDB:PRK09376 RefSeq:YP_505624.1 ProteinModelPortal:Q2GJ27
SMR:Q2GJ27 STRING:Q2GJ27 GeneID:3930743 KEGG:aph:APH_1071
PATRIC:20950898 BioCyc:APHA212042:GHPM-1077-MONOMER Uniprot:Q2GJ27
Length = 443
Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
Identities = 215/343 (62%), Positives = 273/343 (79%)
Query: 10 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERY 69
G G +E LPDGFGFLRS +NY ASSDDIY+S QI++FNL TGD V GEIR P + ERY
Sbjct: 73 GGGVVETLPDGFGFLRSAEANYAASSDDIYISAGQIKKFNLRTGDIVSGEIRAPGDKERY 132
Query: 70 FALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNI---ESKENITGRIIDLIAP 126
F L+K +N + + FD+ E N K++I+ R ID+IAP
Sbjct: 133 FTLVKAYSINYTEIGKLQRYVHFDDLIPVYPEDRILLECNKGAGNEKKDISMRAIDIIAP 192
Query: 127 IGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEV 186
+GKGQR L+VA P+ GK++ILQ IAH+I NH +IV+LI ERPEEVT+M RSV+GEV
Sbjct: 193 LGKGQRALIVAPPRVGKTVILQQIAHSIAVNHPNMELIVLLIGERPEEVTDMLRSVKGEV 252
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTG 246
++STFDEPAYRHVQ+AE+V+E+AKR+VE KK+V+ILLDSITRLARAYN V+P+SGKVLTG
Sbjct: 253 VSSTFDEPAYRHVQLAEIVIERAKRMVEHKKEVVILLDSITRLARAYNEVMPSSGKVLTG 312
Query: 247 GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
GVDSNALQRPKRFFGAARNIE GGSLTIIATALIETGS+MD+VI+EEFKGTGN E+ L+R
Sbjct: 313 GVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCEIILDR 372
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
++A+KR+YPAI+++KSGTR+E++LI+ L+K+W+LR+LL ++
Sbjct: 373 KIADKRIYPAIDISKSGTRKEDMLIESALLKKVWLLRRLLSAM 415
Score = 254 (94.5 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 57/118 (48%), Positives = 73/118 (61%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDI 447
+L V S R+ KQE++F + K+ G G G +E LPDGFGFLRS +NY ASSDDI
Sbjct: 42 ELGVVSNGRMLKQEIIFQLMKRVISEGGVAIGGGVVETLPDGFGFLRSAEANYAASSDDI 101
Query: 448 YLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGKSIILQHIAH 505
Y+S QI++FNL TG + GEIR P + ERYF L+K +N + GK LQ H
Sbjct: 102 YISAGQIKKFNLRTGDIVSGEIRAPGDKERYFTLVKAYSINYT--EIGK---LQRYVH 154
Score = 203 (76.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P+ GK++ILQ IAH+I NH +IV+LI ERPEEVT+M RSV+GEV++STFDEPA
Sbjct: 202 VAPPRVGKTVILQQIAHSIAVNHPNMELIVLLIGERPEEVTDMLRSVKGEVVSSTFDEPA 261
Score = 172 (65.6 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 34/42 (80%), Positives = 38/42 (90%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN V+P+SGKVLTGGVDSNALQRPKRFFGAAR
Sbjct: 289 LDSITRLARAYNEVMPSSGKVLTGGVDSNALQRPKRFFGAAR 330
>TIGR_CMR|NSE_0067 [details] [associations]
symbol:NSE_0067 "transcription termination factor Rho"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 GO:GO:0003723 GO:GO:0004386 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008186 GO:GO:0006353
HOGENOM:HOG000076952 KO:K03628 SUPFAM:SSF68912 TIGRFAMs:TIGR00767
eggNOG:COG1158 OMA:FGFLRAP ProtClustDB:PRK09376 RefSeq:YP_505968.1
ProteinModelPortal:Q2GEX8 STRING:Q2GEX8 GeneID:3931868
KEGG:nse:NSE_0067 PATRIC:22680249
BioCyc:NSEN222891:GHFU-104-MONOMER Uniprot:Q2GEX8
Length = 439
Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
Identities = 203/349 (58%), Positives = 270/349 (77%)
Query: 8 IFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
I G EVL +GF F+RS NY+A+ DDIY+SP Q+RR + TGD + GE+R PK GE
Sbjct: 60 IMSSGVAEVLNEGFAFMRSSVYNYLANQDDIYISPGQVRRLGIRTGDLIYGEVRAPKKGE 119
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXE-----RNIESKE-NITGRII 121
RYFAL K ++N +++ F++ E R +ESK +++GRII
Sbjct: 120 RYFALSKALEINNSPASVARRYVAFESLVPLYPDTPIKLECEKSTRPVESKNCDLSGRII 179
Query: 122 DLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRS 181
D++AP+G+GQR L+VA PK+GK+I+LQ+IAH+I+ N+ + +I++LIDERPEEVT+M+RS
Sbjct: 180 DIVAPLGRGQRALIVAQPKTGKTILLQNIAHSISANYPDIHLIILLIDERPEEVTDMRRS 239
Query: 182 VRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASG 241
V EV++STFDEPA +HV VAE +EKAKRLVE K V+ILLDSITRLARAYN+V+P+SG
Sbjct: 240 VNAEVVSSTFDEPADKHVYVAEFAIEKAKRLVEQGKHVVILLDSITRLARAYNSVVPSSG 299
Query: 242 KVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNME 301
K+L+GGVDSNALQ+ KR FGAARNIE GGSLTII TAL++TGSRMD++IYEEFKGTGN E
Sbjct: 300 KLLSGGVDSNALQKAKRLFGAARNIEGGGSLTIIGTALVDTGSRMDELIYEEFKGTGNSE 359
Query: 302 VHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLT 350
+ L+R+LAEKR++PAI++ KSGTR+EELL++ L K+WVLR++L +T
Sbjct: 360 IILDRKLAEKRLFPAIDITKSGTRKEELLLERSILNKVWVLRRILNQMT 408
Score = 219 (82.2 bits), Expect = 4.7e-44, Sum P(3) = 4.7e-44
Identities = 48/114 (42%), Positives = 67/114 (58%)
Query: 384 TQTIDLEVNSVKRLRKQELMFAIFKKKTKIGER---IFGDGSLEVLPDGFGFLRSQGSNY 440
T L + ++ + KQ+L+ I + + + I G EVL +GF F+RS NY
Sbjct: 24 TMAESLNLQNLAGMSKQDLIILIAQSEVADSQTKKVIMSSGVAEVLNEGFAFMRSSVYNY 83
Query: 441 MASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+A+ DDIY+SP Q+RR + TG L GE+R PK GERYFAL K ++N SP S
Sbjct: 84 LANQDDIYISPGQVRRLGIRTGDLIYGEVRAPKKGERYFALSKALEIN-NSPAS 136
Score = 208 (78.3 bits), Expect = 4.7e-44, Sum P(3) = 4.7e-44
Identities = 38/60 (63%), Positives = 53/60 (88%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA PK+GK+I+LQ+IAH+I+ N+ + +I++LIDERPEEVT+M+RSV EV++STFDEPA
Sbjct: 194 VAQPKTGKTILLQNIAHSISANYPDIHLIILLIDERPEEVTDMRRSVNAEVVSSTFDEPA 253
Score = 152 (58.6 bits), Expect = 4.7e-44, Sum P(3) = 4.7e-44
Identities = 29/42 (69%), Positives = 37/42 (88%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYN+V+P+SGK+L+GGVDSNALQ+ KR FGAAR
Sbjct: 281 LDSITRLARAYNSVVPSSGKLLSGGVDSNALQKAKRLFGAAR 322
>TIGR_CMR|CHY_0130 [details] [associations]
symbol:CHY_0130 "transcription termination factor Rho"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006353 "DNA-dependent transcription, termination"
evidence=ISS] HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 GO:GO:0008186
GO:GO:0006353 HOGENOM:HOG000076952 KO:K03628 SUPFAM:SSF68912
TIGRFAMs:TIGR00767 eggNOG:COG1158 OMA:FGFLRAP ProtClustDB:PRK09376
RefSeq:YP_359002.1 ProteinModelPortal:Q3AFT2 SMR:Q3AFT2
STRING:Q3AFT2 GeneID:3727202 KEGG:chy:CHY_0130 PATRIC:21273453
BioCyc:CHYD246194:GJCN-130-MONOMER Uniprot:Q3AFT2
Length = 425
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 213/354 (60%), Positives = 273/354 (77%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGERYFA 71
G LEVLPDG+GFLR ++ S DDIY+SPSQIR+F+L TGD V G IR PK ERYFA
Sbjct: 61 GVLEVLPDGYGFLRP--FKFLPSQDDIYVSPSQIRKFDLRTGDQVFGVIRPPKENERYFA 118
Query: 72 LLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIIDLIAPIGKGQ 131
LL+++KVNG++PE S R FD E + + ++ R+IDLIAPIGKGQ
Sbjct: 119 LLRVEKVNGKEPETSPERLHFDALTPLYPQDRLYLET---APDEVSARLIDLIAPIGKGQ 175
Query: 132 RGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTF 191
RGL+VA PK+GK+++L+ IA+++ N+ + +IV+LIDERPEEVT+++RSV+GEV++STF
Sbjct: 176 RGLIVAPPKAGKTVLLKQIANSLIKNYPDLYLIVLLIDERPEEVTDIERSVKGEVVSSTF 235
Query: 192 DEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGGVDSN 251
DE HV+VAEMVLE+AKRLVE K DV+ILLDSITRLARAYN VIP SG+ L+GGVD
Sbjct: 236 DEHPENHVKVAEMVLERAKRLVEHKYDVVILLDSITRLARAYNLVIPPSGRTLSGGVDPA 295
Query: 252 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 311
AL +PK FFGAARNIEEGGSLTI+ATAL+ETGSRMDDVI+EEFKGTGNME+ L+R+LAE+
Sbjct: 296 ALYKPKWFFGAARNIEEGGSLTILATALVETGSRMDDVIFEEFKGTGNMELILDRKLAER 355
Query: 312 RVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTVSLF-FIKRT 364
R++PA+++ +SGTR+EELL ++L+ W LR L +LT L IK+T
Sbjct: 356 RIFPAVDVQRSGTRKEELLFTPEELEFAWKLRNELSNLTSQDAAEYLINLIKKT 409
Score = 243 (90.6 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 56/114 (49%), Positives = 75/114 (65%)
Query: 388 DLEVNSVKRLRKQELMFA---IFKKKTKIGER----IFGDGSLEVLPDGFGFLRSQGSNY 440
+LE+ RL+KQEL+F +F +K K E+ + G LEVLPDG+GFLR +
Sbjct: 21 ELELPGYYRLKKQELVFELAKVFAQKAKEQEQKESLLTASGVLEVLPDGYGFLRP--FKF 78
Query: 441 MASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKS 494
+ S DDIY+SPSQIR+F+L TG G IR PK ERYFALL+++KVN P++
Sbjct: 79 LPSQDDIYVSPSQIRKFDLRTGDQVFGVIRPPKENERYFALLRVEKVNGKEPET 132
Score = 186 (70.5 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 33/58 (56%), Positives = 51/58 (87%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDE 546
VA PK+GK+++L+ IA+++ N+ + +IV+LIDERPEEVT+++RSV+GEV++STFDE
Sbjct: 180 VAPPKAGKTVLLKQIANSLIKNYPDLYLIVLLIDERPEEVTDIERSVKGEVVSSTFDE 237
Score = 143 (55.4 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 35/73 (47%), Positives = 44/73 (60%)
Query: 522 DERPE---EVTEMQRSVRGEVIASTFDEPAL-SVMCKLARAYNTVIPASGKVLTGGVDSN 577
DE PE +V EM ++ +D L + +LARAYN VIP SG+ L+GGVD
Sbjct: 236 DEHPENHVKVAEMVLERAKRLVEHKYDVVILLDSITRLARAYNLVIPPSGRTLSGGVDPA 295
Query: 578 ALQRPKRFFGAAR 590
AL +PK FFGAAR
Sbjct: 296 ALYKPKWFFGAAR 308
Score = 41 (19.5 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 187 IASTFDEPAYRHVQVAEMVLEKAKRLVEMKKD 218
+A + P Y ++ E+V E AK + K+
Sbjct: 18 LARELELPGYYRLKKQELVFELAKVFAQKAKE 49
>TIGR_CMR|BA_5575 [details] [associations]
symbol:BA_5575 "transcription termination factor Rho"
species:198094 "Bacillus anthracis str. Ames" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 GO:GO:0004386
Gene3D:2.40.50.140 InterPro:IPR012340 GO:GO:0008186 GO:GO:0006353
HOGENOM:HOG000076952 KO:K03628 SUPFAM:SSF68912 TIGRFAMs:TIGR00767
ProtClustDB:PRK09376 HSSP:P03002 RefSeq:NP_847732.1
RefSeq:YP_031420.1 RefSeq:YP_052656.1 ProteinModelPortal:Q81JW8
SMR:Q81JW8 DNASU:1085270 EnsemblBacteria:EBBACT00000008296
EnsemblBacteria:EBBACT00000014032 EnsemblBacteria:EBBACT00000024325
GeneID:1085270 GeneID:2820866 GeneID:2852056 KEGG:ban:BA_5575
KEGG:bar:GBAA_5575 KEGG:bat:BAS5181 OMA:RTWLLRK
BioCyc:BANT260799:GJAJ-5256-MONOMER
BioCyc:BANT261594:GJ7F-5435-MONOMER Uniprot:Q81JW8
Length = 423
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 207/339 (61%), Positives = 265/339 (78%)
Query: 9 FGDGSLEVLP-DGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE 67
F +G LE++ +GFGFLR NY SS+DIY+S SQIRRF+L GD V G++R PK E
Sbjct: 52 FMEGVLEIIQSEGFGFLRP--INYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENE 109
Query: 68 RYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIIDLIAPI 127
RYF LL+++ VNG+ PE +K R F E E K+ T RI+DLIAP+
Sbjct: 110 RYFGLLQVEAVNGDDPESAKERVHFPALTPLYPDRQMKLET--EPKKLPT-RIMDLIAPV 166
Query: 128 GKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVI 187
G GQRGL+VA PK+GK+ +L+ IAH++TTNH EA +IV+LIDERPEEVT+++RSV+G+ +
Sbjct: 167 GFGQRGLIVAPPKAGKTSLLKEIAHSVTTNHPEAELIVLLIDERPEEVTDIERSVKGDFV 226
Query: 188 ASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLTGG 247
+STFDE H++VAE+VLE+A RLVE KKDVIIL+DSITRLARAYN VIP SG+ L+GG
Sbjct: 227 SSTFDEVPENHIKVAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGG 286
Query: 248 VDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERR 307
+D A RPKRFFGAARNIEEGGSLTI+ATAL++TGSRMDDVIYEEFKGTGNME+HL+R
Sbjct: 287 IDPAAFHRPKRFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRS 346
Query: 308 LAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
LAE+R++PAI++ +SGTR+E+LLI + L K+W +RK +
Sbjct: 347 LAERRIFPAIDIRRSGTRKEDLLIPKEHLDKLWGIRKTM 385
Score = 227 (85.0 bits), Expect = 5.0e-33, Sum P(2) = 5.0e-33
Identities = 49/110 (44%), Positives = 71/110 (64%)
Query: 388 DLEVNSVKRLRKQELMFAIFKKKTKIGERIFGDGSLEVLP-DGFGFLRSQGSNYMASSDD 446
+ +++ +L K+EL+FAI K + + F +G LE++ +GFGFLR NY SS+D
Sbjct: 22 EFKISYYSKLTKKELIFAILKARAEKEGFFFMEGVLEIIQSEGFGFLRP--INYSPSSED 79
Query: 447 IYLSPSQIRRFNLHTGILWKGEIRVPKNGERYFALLKIKKVNVASPKSGK 496
IY+S SQIRRF+L G G++R PK ERYF LL+++ VN P+S K
Sbjct: 80 IYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAVNGDDPESAK 129
Score = 205 (77.2 bits), Expect = 5.0e-33, Sum P(2) = 5.0e-33
Identities = 37/58 (63%), Positives = 52/58 (89%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDE 546
VA PK+GK+ +L+ IAH++TTNH EA +IV+LIDERPEEVT+++RSV+G+ ++STFDE
Sbjct: 175 VAPPKAGKTSLLKEIAHSVTTNHPEAELIVLLIDERPEEVTDIERSVKGDFVSSTFDE 232
Score = 139 (54.0 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 522 DERPE---EVTEM--QRSVRGEVIASTFDEPAL-SVMCKLARAYNTVIPASGKVLTGGVD 575
DE PE +V E+ +R++R ++ D L + +LARAYN VIP SG+ L+GG+D
Sbjct: 231 DEVPENHIKVAELVLERAMR--LVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGID 288
Query: 576 SNALQRPKRFFGAAR 590
A RPKRFFGAAR
Sbjct: 289 PAAFHRPKRFFGAAR 303
>TIGR_CMR|CJE_1292 [details] [associations]
symbol:CJE_1292 "transcription termination factor Rho"
species:195099 "Campylobacter jejuni RM1221" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_01884 InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113
InterPro:IPR011129 Pfam:PF00006 Pfam:PF07497 Pfam:PF07498
SMART:SM00357 SMART:SM00382 SMART:SM00959 GO:GO:0005524
GO:GO:0006355 GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008186 GO:GO:0006353 HOGENOM:HOG000076952 KO:K03628
SUPFAM:SSF68912 TIGRFAMs:TIGR00767 eggNOG:COG1158 OMA:FGFLRAP
ProtClustDB:PRK09376 PIR:F81320 RefSeq:YP_179280.1
ProteinModelPortal:Q5HTV5 SMR:Q5HTV5 STRING:Q5HTV5 GeneID:3231799
KEGG:cjr:CJE1292 PATRIC:20044380
BioCyc:CJEJ195099:GJC0-1318-MONOMER Uniprot:Q5HTV5
Length = 432
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 205/346 (59%), Positives = 261/346 (75%)
Query: 1 KTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEI 60
+TK G I G LE+ +G+GFLR SN S +D Y+S SQI++F L GD V G++
Sbjct: 59 QTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQIKKFALRVGDIVTGQV 118
Query: 61 RVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRI 120
R PK+ E+Y+ALLKI+ +N + +K R LFDN E + +TGR+
Sbjct: 119 REPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTEKIKLEYDAMK---LTGRV 175
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQR 180
+DL PIGKGQRGL+VA P++GK+ +++ +A AI NH E +IV+L+DERPEEVT+MQR
Sbjct: 176 LDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHLIVLLVDERPEEVTDMQR 235
Query: 181 SVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPAS 240
V+GEV +STFD PAY HV+VAE+V+EKAKR+VE KDVIILLDSITRLARAYNT P+S
Sbjct: 236 CVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVIILLDSITRLARAYNTATPSS 295
Query: 241 GKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNM 300
GKVL+GGVD+NAL +PKRFFGAARNIE GGSLTI+ATALI+TGSRMDDVI+EEFKGTGN
Sbjct: 296 GKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATALIDTGSRMDDVIFEEFKGTGNS 355
Query: 301 EVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
E+ L+R +A++R+YPAIN+ KSGTR+EELL LQKIW +R +
Sbjct: 356 EIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQKIWAIRSAI 401
Score = 223 (83.6 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 60/185 (32%), Positives = 100/185 (54%)
Query: 362 KRT-IPVEKNLLKDACMPLVLAETQTI--DLEVNSVKRLRKQELMFAIFKKKTKIGERIF 418
+RT +PVE +++ + L L I + E+ + + R+QEL+F I K +TK G I
Sbjct: 9 QRTHVPVEGYKIEELKL-LDLENLVKIANECEIENPREFRRQELIFEILKAQTKKGGFIL 67
Query: 419 GDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGERY 478
G LE+ +G+GFLR SN S +D Y+S SQI++F L G + G++R PK+ E+Y
Sbjct: 68 FTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQIKKFALRVGDIVTGQVREPKDQEKY 127
Query: 479 FALLKIKKVNVASPKSGKSI-ILQHIAHAITTNHSEAIMIVMLIDERPEEV-TEMQRSVR 536
+ALLKI+ +N + K + ++ T + M + R ++ T + + R
Sbjct: 128 YALLKIEAINYLPLQEAKERPLFDNLTPIFPTEKIKLEYDAMKLTGRVLDLFTPIGKGQR 187
Query: 537 GEVIA 541
G ++A
Sbjct: 188 GLIVA 192
Score = 185 (70.2 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 40/87 (45%), Positives = 59/87 (67%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEPA 548
VA P++GK+ +++ +A AI NH E +IV+L+DERPEEVT+MQR V+GEV +STFD PA
Sbjct: 191 VAPPRTGKTELMKELATAIAKNHPEMHLIVLLVDERPEEVTDMQRCVKGEVFSSTFDLPA 250
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVD 575
+ + R VI + +++ G D
Sbjct: 251 YNHV----RVAELVIEKAKRMVETGKD 273
Score = 157 (60.3 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +LARAYNT P+SGKVL+GGVD+NAL +PKRFFGAAR
Sbjct: 278 LDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAAR 319
>UNIPROTKB|P66028 [details] [associations]
symbol:rho "Transcription termination factor Rho"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0051260
"protein homooligomerization" evidence=IPI] HAMAP:MF_01884
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR004665
InterPro:IPR011112 InterPro:IPR011113 InterPro:IPR011129
Pfam:PF00006 Pfam:PF07497 Pfam:PF07498 SMART:SM00357 SMART:SM00382
SMART:SM00959 GO:GO:0005886 GO:GO:0005524 GO:GO:0040007
GO:GO:0005618 GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0051260 GO:GO:0003723
GO:GO:0004386 Gene3D:2.40.50.140 InterPro:IPR012340 GO:GO:0006363
GO:GO:0008186 HOGENOM:HOG000076952 KO:K03628 SUPFAM:SSF68912
TIGRFAMs:TIGR00767 eggNOG:COG1158 PIR:E70773 RefSeq:NP_215813.1
RefSeq:NP_335784.1 RefSeq:YP_006514674.1 ProteinModelPortal:P66028
SMR:P66028 PRIDE:P66028 EnsemblBacteria:EBMYCT00000000373
EnsemblBacteria:EBMYCT00000070310 GeneID:13319879 GeneID:886952
GeneID:924733 KEGG:mtc:MT1336 KEGG:mtu:Rv1297 KEGG:mtv:RVBD_1297
PATRIC:18124704 TubercuList:Rv1297 OMA:EFGIVHK ProtClustDB:PRK12678
Uniprot:P66028
Length = 602
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 184/344 (53%), Positives = 244/344 (70%)
Query: 12 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGDFVEGEIRVPKNGE---- 67
G L+VL D + F+R+ G Y+ D+Y+S + +R+ + GD V G +RVPK GE
Sbjct: 228 GILDVL-DNYAFVRTSG--YLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQ 284
Query: 68 --RYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITGRIIDLIA 125
++ L+++ +NG E +K R F E S E +T R+IDLI
Sbjct: 285 RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET---STERLTTRVIDLIM 341
Query: 126 PIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE 185
PIGKGQR L+V+ PK+GK+ ILQ IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GE
Sbjct: 342 PIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGE 401
Query: 186 VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKVLT 245
VIASTFD P H VAE+ +E+AKRLVE KDV++LLDSITRL RAYN PASG++L+
Sbjct: 402 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 461
Query: 246 GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLE 305
GGVDS AL PKRF GAARNIEEGGSLTIIATA++ETGS D VI+EEFKGTGN E+ L+
Sbjct: 462 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD 521
Query: 306 RRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
R++AE+RV+PA+++N SGTR++ELL+ D+ + LR++L L
Sbjct: 522 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGL 565
Score = 204 (76.9 bits), Expect = 2.9e-28, Sum P(3) = 2.9e-28
Identities = 40/59 (67%), Positives = 51/59 (86%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDEP 547
V+ PK+GK+ ILQ IA+AIT N+ E ++V+L+DERPEEVT+MQRSV+GEVIASTFD P
Sbjct: 352 VSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRP 410
Score = 132 (51.5 bits), Expect = 2.9e-28, Sum P(3) = 2.9e-28
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 549 LSVMCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
L + +L RAYN PASG++L+GGVDS AL PKRF GAAR
Sbjct: 439 LDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 480
Score = 102 (41.0 bits), Expect = 2.9e-28, Sum P(3) = 2.9e-28
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 421 GSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTGILWKGEIRVPKNGE---- 476
G L+VL D + F+R+ G Y+ D+Y+S + +R+ + G G +RVPK GE
Sbjct: 228 GILDVL-DNYAFVRTSG--YLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQ 284
Query: 477 --RYFALLKIKKVNVASPKSGK 496
++ L+++ +N S + K
Sbjct: 285 RQKFNPLVRLDSINGGSVEDAK 306
>TIGR_CMR|CPS_0717 [details] [associations]
symbol:CPS_0717 "transcription termination factor Rho
homolog" species:167879 "Colwellia psychrerythraea 34H" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
InterPro:IPR000194 InterPro:IPR003593 Pfam:PF00006 SMART:SM00382
GO:GO:0005524 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
HOGENOM:HOG000076952 KO:K03628 eggNOG:COG1158 RefSeq:YP_267467.1
STRING:Q488P7 GeneID:3522002 KEGG:cps:CPS_0717 PATRIC:21464751
OMA:VMIVIDS ProtClustDB:PRK12608 BioCyc:CPSY167879:GI48-804-MONOMER
Uniprot:Q488P7
Length = 314
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 122/256 (47%), Positives = 170/256 (66%)
Query: 117 TGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVT 176
+ R +DL PIG GQRGL+VA P SGK+ IL+H A+ + + + +LIDERPEEVT
Sbjct: 57 SARAMDLFTPIGMGQRGLIVAPPGSGKTTILKHTCQAVGAAYPDIKLYALLIDERPEEVT 116
Query: 177 EMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTV 236
+ +RSV +V AS+ DE HV+VA +L A++ DV+I++DS+TRL R YN
Sbjct: 117 DFKRSVPAQVYASSTDENYDHHVRVANDLLNIARKEAGEGHDVMIVIDSLTRLTRVYNAN 176
Query: 237 IPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKG 296
+SG+ ++GG+D+ A++ P++ FG ARNIE GGS+TI+AT L++TGSRMD VI+EEFKG
Sbjct: 177 QKSSGRTMSGGIDARAMEIPRKLFGTARNIENGGSITILATILVDTGSRMDQVIFEEFKG 236
Query: 297 TGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSLTMTSFTV 356
TGNME+ L R A RV+PA+++ KS TRREELL+ ++K+ LR+ L SL
Sbjct: 237 TGNMEIVLSREAANMRVFPALDIAKSSTRREELLLNSKDIEKVRFLRRALTSLKPVEGAR 296
Query: 357 SLFFIKRTIPVEKNLL 372
L + P LL
Sbjct: 297 KLVELLEKYPTNAELL 312
Score = 135 (52.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 489 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGEVIASTFDE 546
VA P SGK+ IL+H A+ + + + +LIDERPEEVT+ +RSV +V AS+ DE
Sbjct: 76 VAPPGSGKTTILKHTCQAVGAAYPDIKLYALLIDERPEEVTDFKRSVPAQVYASSTDE 133
Score = 93 (37.8 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 552 MCKLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAAR 590
+ +L R YN +SG+ ++GG+D+ A++ P++ FG AR
Sbjct: 166 LTRLTRVYNANQKSSGRTMSGGIDARAMEIPRKLFGTAR 204
>UNIPROTKB|Q4KG66 [details] [associations]
symbol:fliI "Flagellum-specific ATP synthase FliI"
species:220664 "Pseudomonas protegens Pf-5" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] [GO:0046961 "proton-transporting ATPase activity,
rotational mechanism" evidence=ISS] InterPro:IPR000194
InterPro:IPR003593 InterPro:IPR005714 InterPro:IPR020003
InterPro:IPR020005 Pfam:PF00006 PROSITE:PS00152 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0046961 GO:GO:0015986 GO:GO:0009296 GO:GO:0001539
eggNOG:COG1157 HOGENOM:HOG000257876 KO:K02412 GO:GO:0030257
GO:GO:0030254 PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 OMA:INDDSYH
GO:GO:0033178 TIGRFAMs:TIGR03496 ProtClustDB:PRK05688
RefSeq:YP_258767.1 ProteinModelPortal:Q4KG66 SMR:Q4KG66
STRING:Q4KG66 GeneID:3477225 KEGG:pfl:PFL_1641 PATRIC:19872511
BioCyc:PFLU220664:GIX8-1649-MONOMER Uniprot:Q4KG66
Length = 452
Score = 220 (82.5 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 74/237 (31%), Positives = 116/237 (48%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA-IMIVMLIDERPEEVTE 177
R I+ + +G+GQR L A GKS++L + T +EA I++V LI ER EV E
Sbjct: 157 RSINGLLTVGRGQRLGLFAGTGVGKSVLL-----GMMTRFTEADIIVVGLIGERGREVKE 211
Query: 178 MQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230
+ GE V+AS D+ ++ A A+ + K+V++L+DS+TR A
Sbjct: 212 FIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFA 271
Query: 231 RAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARNIEEGG-SLTIIATALIETGSRMDD 288
+A + A G+ T G + + + A N E GG S+T T L E G D
Sbjct: 272 QAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSE-GDDQQD 330
Query: 289 VIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKL 345
I + +G + + L RRLAE+ YPAI++ S +R +I D + + ++L
Sbjct: 331 PIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVISPDNMARAQYFKQL 387
>UNIPROTKB|Q48GE5 [details] [associations]
symbol:fliI "Flagellum-specific ATP synthase FliI"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] [GO:0046961
"proton-transporting ATPase activity, rotational mechanism"
evidence=ISS] InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR005714 InterPro:IPR020003 InterPro:IPR020005
Pfam:PF00006 PROSITE:PS00152 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0046961
GO:GO:0015986 GO:GO:0009296 GO:GO:0001539 eggNOG:COG1157
HOGENOM:HOG000257876 KO:K02412 GO:GO:0030257 GO:GO:0030254
PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 OMA:INDDSYH GO:GO:0033178
TIGRFAMs:TIGR03496 RefSeq:YP_275538.1 ProteinModelPortal:Q48GE5
SMR:Q48GE5 STRING:Q48GE5 GeneID:3559045 KEGG:psp:PSPPH_3380
PATRIC:19976168 ProtClustDB:PRK05688 Uniprot:Q48GE5
Length = 452
Score = 217 (81.4 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 75/250 (30%), Positives = 120/250 (48%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA-IMIVMLIDERPEEVTE 177
R I+ + +G+GQR L A GKS++L + T +EA I++V LI ER EV E
Sbjct: 157 RCINGLLTVGRGQRLGLFAGTGVGKSVLL-----GMMTRFTEADIIVVGLIGERGREVKE 211
Query: 178 MQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230
+ GE V+AS D+ ++ A A+ + K+V++L+DS+TR A
Sbjct: 212 FIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFA 271
Query: 231 RAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARNIEEGG-SLTIIATALIETGSRMDD 288
+A + A G+ T G + R + A N E GG S+T T L E G D
Sbjct: 272 QAQREIALAIGEPPATKGYPPSVFARLPKLVERAGNAEAGGGSITAFYTVLSE-GDDQQD 330
Query: 289 VIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYS 348
I + +G + + L RRLAE+ YPAI++ S +R ++ + + + ++L
Sbjct: 331 PIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVVSPEHMARAQHFKQLWSR 390
Query: 349 LTMTSFTVSL 358
T +S+
Sbjct: 391 YQQTRDLISV 400
>UNIPROTKB|E1WFT1 [details] [associations]
symbol:ssaN "Type III secretion ATP synthase"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR005714 InterPro:IPR013380 Pfam:PF00006 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0006754 GO:GO:0046961
GO:GO:0030257 GO:GO:0030254 PANTHER:PTHR15184:SF9
TIGRFAMs:TIGR01026 EMBL:FQ312003 GenomeReviews:FQ312003_GR
OMA:KLANDHV KO:K03224 TIGRFAMs:TIGR02546 RefSeq:YP_005181259.1
ProteinModelPortal:E1WFT1 SMR:E1WFT1 PRIDE:E1WFT1 GeneID:11764786
KEGG:sey:SL1344_1349 PATRIC:43188321 Uniprot:E1WFT1
Length = 433
Score = 207 (77.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 73/245 (29%), Positives = 122/245 (49%)
Query: 116 ITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE 174
+TG R ID +A G+GQR + ++P GKS +L + +A + + +++LI ER E
Sbjct: 140 MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN----VLVLIGERGRE 195
Query: 175 VTEM-------QRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSIT 227
V E + R ++ +T D PA V+ + A+ + K V++L DS+T
Sbjct: 196 VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT 255
Query: 228 RLARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAA-RNIE-----EGGSLTIIATALIE 281
R ARA + A+G+ G + P F A R +E E GS+T T L+E
Sbjct: 256 RYARAAREIALAAGETAVSG------EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE 309
Query: 282 TGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWV 341
G M++ + +E + + + L RRLAE+ YPAI++ + +R ++ + Q +
Sbjct: 310 -GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI 368
Query: 342 LRKLL 346
LR+ L
Sbjct: 369 LRRCL 373
>UNIPROTKB|B7UMA6 [details] [associations]
symbol:escN "Translocator EscN" species:574521 "Escherichia
coli O127:H6 str. E2348/69" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR005714 InterPro:IPR013380 InterPro:IPR020003
Pfam:PF00006 PROSITE:PS00152 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0006754 GO:GO:0046961
EMBL:FM180568 GenomeReviews:FM180568_GR eggNOG:COG1157
HOGENOM:HOG000257876 GO:GO:0030257 GO:GO:0030254
PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 OMA:KLANDHV
RefSeq:YP_002331410.1 PDB:2OBL PDB:2OBM PDBsum:2OBL PDBsum:2OBM
ProteinModelPortal:B7UMA6 SMR:B7UMA6 IntAct:B7UMA6 STRING:B7UMA6
EnsemblBacteria:EBESCT00000111417 GeneID:7062686
KEGG:ecg:E2348C_3948 PATRIC:18347102 KO:K03224
ProtClustDB:CLSK334788 BioCyc:ECOL574521:GJAO-4091-MONOMER
EvolutionaryTrace:B7UMA6 TIGRFAMs:TIGR02546 Uniprot:B7UMA6
Length = 446
Score = 199 (75.1 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 70/247 (28%), Positives = 123/247 (49%)
Query: 108 RNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVM 166
R + + I G R ID + G GQR + A GKS +L I + + + I+++
Sbjct: 147 RQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD----IIVLA 202
Query: 167 LIDERPEEVTE----MQRSVRGE--VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVI 220
LI ER EV E + +S + ++ +T D PA ++ A A+ + K+V+
Sbjct: 203 LIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVL 262
Query: 221 ILLDSITRLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATAL 279
+++DS+TR ARA V ASG+ + GG + + A +G S+T I T L
Sbjct: 263 LMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKG-SITAIYTVL 321
Query: 280 IETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKI 339
+E+ + ++D I +E + + + L R LAE+ +PAI++ S +R ++ + L+
Sbjct: 322 LESDN-VNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAA 380
Query: 340 WVLRKLL 346
+KL+
Sbjct: 381 AECKKLI 387
>TIGR_CMR|SO_3225 [details] [associations]
symbol:SO_3225 "flagellum-specific ATP synthase FliI"
species:211586 "Shewanella oneidensis MR-1" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0009288 "bacterial-type
flagellum" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR005714
InterPro:IPR020003 InterPro:IPR020005 Pfam:PF00006 PROSITE:PS00152
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0019861
GO:GO:0016887 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0015986
GO:GO:0009296 HOGENOM:HOG000257876 KO:K02412 GO:GO:0030257
GO:GO:0030254 PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 OMA:INDDSYH
GO:GO:0033178 GO:GO:0016820 TIGRFAMs:TIGR03496 ProtClustDB:PRK08972
RefSeq:NP_718780.1 ProteinModelPortal:Q8ECB8 SMR:Q8ECB8
GeneID:1170917 KEGG:son:SO_3225 PATRIC:23526132 Uniprot:Q8ECB8
Length = 445
Score = 198 (74.8 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 71/251 (28%), Positives = 119/251 (47%)
Query: 108 RNIESKENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVML 167
R I ++ R I+ + +GKGQR L A GKS++L + T + I++V L
Sbjct: 141 RAITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD----IIVVGL 196
Query: 168 IDERPEEVTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVI 220
+ ER EV E + GE V+A+ D ++ E A+ ++ +V+
Sbjct: 197 VGERGREVKEFIEEILGEKGRARSVVVAAPADTSPLMRLRACETSTRIAEYFRDLGYNVL 256
Query: 221 ILLDSITRLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARNIEEG-GSLTIIATA 278
+L+DS+TR A+A + A G+ T G + + R A N G GS+T T
Sbjct: 257 LLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPRLVERAGNGGPGQGSITAFYTV 316
Query: 279 LIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQK 338
L E G D I + + + + L R LA+ YPAI++ S +R ++I ++ L+
Sbjct: 317 LTE-GDDQQDPIADASRAILDGHIVLSRSLADSGHYPAIDIEASISRVAPMVISNEHLEA 375
Query: 339 IWVLRKLLYSL 349
+ +++ YSL
Sbjct: 376 MRRVKQT-YSL 385
>UNIPROTKB|P52612 [details] [associations]
symbol:fliI "flagellum-specific ATP synthase FliI"
species:83333 "Escherichia coli K-12" [GO:0033178
"proton-transporting two-sector ATPase complex, catalytic domain"
evidence=IEA] [GO:0030257 "type III protein secretion system
complex" evidence=IEA] [GO:0030254 "protein secretion by the type
III secretion system" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0016820 "hydrolase activity,
acting on acid anhydrides, catalyzing transmembrane movement of
substances" evidence=IEA] [GO:0015986 "ATP synthesis coupled proton
transport" evidence=IEA] [GO:0009296 "flagellum assembly"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0006200 "ATP catabolic process" evidence=IEA] [GO:0043064
"flagellum organization" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0015992 "proton transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0006811 "ion transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006754 "ATP biosynthetic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR005714
InterPro:IPR020003 InterPro:IPR020005 Pfam:PF00006 PROSITE:PS00152
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0016887
GO:GO:0015986 GO:GO:0009296 EMBL:L49147 eggNOG:COG1157
HOGENOM:HOG000257876 KO:K02412 GO:GO:0030257 GO:GO:0030254
PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 PIR:B64958
RefSeq:NP_416451.1 RefSeq:YP_490195.1 ProteinModelPortal:P52612
SMR:P52612 DIP:DIP-9655N IntAct:P52612 PRIDE:P52612
EnsemblBacteria:EBESCT00000000118 EnsemblBacteria:EBESCT00000000119
EnsemblBacteria:EBESCT00000015972 GeneID:12931394 GeneID:946457
KEGG:ecj:Y75_p1911 KEGG:eco:b1941 PATRIC:32119211 EchoBASE:EB4163
EcoGene:EG20266 OMA:INDDSYH ProtClustDB:PRK07960
BioCyc:EcoCyc:G377-MONOMER BioCyc:ECOL316407:JW1925-MONOMER
Genevestigator:P52612 GO:GO:0033178 GO:GO:0016820
TIGRFAMs:TIGR03496 Uniprot:P52612
Length = 457
Score = 198 (74.8 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 73/252 (28%), Positives = 115/252 (45%)
Query: 117 TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175
TG R I+ + +G+GQR L A GKS++L +A + +++V LI ER EV
Sbjct: 161 TGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD----VIVVGLIGERGREV 216
Query: 176 TEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITR 228
+ ++ G VIA+ D +Q A A+ + + V++++DS+TR
Sbjct: 217 KDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR 276
Query: 229 LARAYNTVIPASGKV-LTGGVDSNALQR-PKRFFGAARNIEEGGSLTIIATALIETGSRM 286
A A + A G+ T G + + P A I GGS+T T L E G
Sbjct: 277 YAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTE-GDDQ 335
Query: 287 DDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
D I + + + + L RRLAE YPAI++ S +R LI + ++ ++LL
Sbjct: 336 QDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYARVRTFKQLL 395
Query: 347 YSLTMTSFTVSL 358
S VS+
Sbjct: 396 SSFQRNRDLVSV 407
>UNIPROTKB|Q485L8 [details] [associations]
symbol:fliI "Flagellum-specific ATP synthase FliI"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0009296 "flagellum
assembly" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR005714
InterPro:IPR020003 InterPro:IPR020005 Pfam:PF00006 PROSITE:PS00152
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0015986 GO:GO:0009296
GO:GO:0001539 eggNOG:COG1157 HOGENOM:HOG000257876 KO:K02412
GO:GO:0030257 GO:GO:0030254 PANTHER:PTHR15184:SF9
TIGRFAMs:TIGR01026 OMA:INDDSYH GO:GO:0033178 GO:GO:0016820
TIGRFAMs:TIGR03496 RefSeq:YP_268247.1 ProteinModelPortal:Q485L8
SMR:Q485L8 STRING:Q485L8 GeneID:3522450 KEGG:cps:CPS_1505
PATRIC:21466217 ProtClustDB:PRK08972
BioCyc:CPSY167879:GI48-1586-MONOMER Uniprot:Q485L8
Length = 449
Score = 196 (74.1 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 77/283 (27%), Positives = 127/283 (44%)
Query: 78 VNGE-KPELSKNRTLFDNXXXXXXXXXXXXERN-IESKENITGRIIDLIAPIGKGQRGLL 135
+NG KP SK DN R I ++ R I+ +GKGQR L
Sbjct: 108 INGVGKPLDSKGPIKADNDYHHDSKPINPLSRRAITEVLDVGVRSINSFISVGKGQRMGL 167
Query: 136 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIA 188
A GKS+++ + T + +++V L+ ER EV E + GE V+A
Sbjct: 168 FAGSGVGKSVLMGMMTRGTTAD----VVVVGLVGERGREVKEFIEEILGEEGLKRAVVVA 223
Query: 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKV-LTGG 247
+ D ++ E ++ ++ + +V++LLDS+TR A+A + A G+ T G
Sbjct: 224 APADNSPLMRLKGCETAVQISEYFRDQGLNVLLLLDSLTRYAQAQREIALAVGEPPATKG 283
Query: 248 VDSNALQRPKRFFGAARNIEEG-GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
+ + + A N EG GS+T T L E G + D + + + + V L R
Sbjct: 284 YPPSVFSKLPQLVERAGNGGEGQGSITAFYTVLTE-GDDLQDPVADAARAILDGHVVLSR 342
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LA+ YPA+N+ S +R ++ D Q++ K +Y+L
Sbjct: 343 ELADAGHYPAVNIEGSISRVMPMVTSADH-QELAKQLKQMYAL 384
>UNIPROTKB|Q48M23 [details] [associations]
symbol:hrcN "Type III secretion component protein HrcN"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR000194
InterPro:IPR003593 InterPro:IPR004100 InterPro:IPR005714
InterPro:IPR020003 Pfam:PF00006 Pfam:PF02874 PROSITE:PS00152
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0009058
GO:GO:0016887 EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0015992
eggNOG:COG1157 HOGENOM:HOG000257876 GO:GO:0030257 GO:GO:0030254
PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 KO:K03224
RefSeq:YP_273549.1 ProteinModelPortal:Q48M23 STRING:Q48M23
GeneID:3557058 KEGG:psp:PSPPH_1290 PATRIC:19971703 OMA:ERAGMGR
ProtClustDB:CLSK821705 Uniprot:Q48M23
Length = 449
Score = 196 (74.1 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 67/218 (30%), Positives = 109/218 (50%)
Query: 117 TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175
TG R ID +G+GQR L A GK+ ++ +A N +++ LI ER E+
Sbjct: 154 TGVRAIDSAILLGEGQRVGLFAGAGCGKTTLMAELAR----NMGCDVIVFGLIGERGREL 209
Query: 176 TE-----MQRSVRGE--VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITR 228
E + ++R ++ +T D + + A A+ + V++LLDS+TR
Sbjct: 210 REFLDHELDETLRARSVLVCATSDRSSMERARAAFTATAIAEAFRARGQKVLLLLDSLTR 269
Query: 229 LARAYNTVIPASGKVL-TGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMD 287
ARA + ASG+ L GG+ + R A + E GS+T + T LIE S M+
Sbjct: 270 FARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERA-GMSENGSITALYTVLIEQDS-MN 327
Query: 288 DVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D + +E + + + L R+LAE+ YPAI+++ S +R
Sbjct: 328 DPVADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISR 365
>TIGR_CMR|CPS_1505 [details] [associations]
symbol:CPS_1505 "flagellum-specific ATP synthase FliI"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0009296 "flagellum
assembly" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR005714
InterPro:IPR020003 InterPro:IPR020005 Pfam:PF00006 PROSITE:PS00152
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0015986 GO:GO:0009296
GO:GO:0001539 eggNOG:COG1157 HOGENOM:HOG000257876 KO:K02412
GO:GO:0030257 GO:GO:0030254 PANTHER:PTHR15184:SF9
TIGRFAMs:TIGR01026 OMA:INDDSYH GO:GO:0033178 GO:GO:0016820
TIGRFAMs:TIGR03496 RefSeq:YP_268247.1 ProteinModelPortal:Q485L8
SMR:Q485L8 STRING:Q485L8 GeneID:3522450 KEGG:cps:CPS_1505
PATRIC:21466217 ProtClustDB:PRK08972
BioCyc:CPSY167879:GI48-1586-MONOMER Uniprot:Q485L8
Length = 449
Score = 196 (74.1 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 77/283 (27%), Positives = 127/283 (44%)
Query: 78 VNGE-KPELSKNRTLFDNXXXXXXXXXXXXERN-IESKENITGRIIDLIAPIGKGQRGLL 135
+NG KP SK DN R I ++ R I+ +GKGQR L
Sbjct: 108 INGVGKPLDSKGPIKADNDYHHDSKPINPLSRRAITEVLDVGVRSINSFISVGKGQRMGL 167
Query: 136 VASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEMQRSVRGE-------VIA 188
A GKS+++ + T + +++V L+ ER EV E + GE V+A
Sbjct: 168 FAGSGVGKSVLMGMMTRGTTAD----VVVVGLVGERGREVKEFIEEILGEEGLKRAVVVA 223
Query: 189 STFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAYNTVIPASGKV-LTGG 247
+ D ++ E ++ ++ + +V++LLDS+TR A+A + A G+ T G
Sbjct: 224 APADNSPLMRLKGCETAVQISEYFRDQGLNVLLLLDSLTRYAQAQREIALAVGEPPATKG 283
Query: 248 VDSNALQRPKRFFGAARNIEEG-GSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLER 306
+ + + A N EG GS+T T L E G + D + + + + V L R
Sbjct: 284 YPPSVFSKLPQLVERAGNGGEGQGSITAFYTVLTE-GDDLQDPVADAARAILDGHVVLSR 342
Query: 307 RLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSL 349
LA+ YPA+N+ S +R ++ D Q++ K +Y+L
Sbjct: 343 ELADAGHYPAVNIEGSISRVMPMVTSADH-QELAKQLKQMYAL 384
>TIGR_CMR|CJE_0188 [details] [associations]
symbol:CJE_0188 "flagellum-specific ATP synthase FliI"
species:195099 "Campylobacter jejuni RM1221" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0009288 "bacterial-type
flagellum" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] [GO:0046961 "proton-transporting ATPase activity,
rotational mechanism" evidence=ISS] InterPro:IPR000194
InterPro:IPR003593 InterPro:IPR005714 InterPro:IPR020003
Pfam:PF00006 PROSITE:PS00152 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0009058 GO:GO:0016887 EMBL:CP000025
GenomeReviews:CP000025_GR eggNOG:COG1157 HOGENOM:HOG000257876
KO:K02412 GO:GO:0030257 GO:GO:0030254 PANTHER:PTHR15184:SF9
TIGRFAMs:TIGR01026 OMA:INDDSYH ProtClustDB:PRK08472
RefSeq:YP_178212.1 ProteinModelPortal:Q5HWX3 STRING:Q5HWX3
GeneID:3230951 KEGG:cjr:CJE0188 PATRIC:20042085
BioCyc:CJEJ195099:GJC0-193-MONOMER Uniprot:Q5HWX3
Length = 461
Score = 193 (73.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 67/239 (28%), Positives = 110/239 (46%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE- 177
+ ID + G GQ+ + A GKS ++ I N I +V LI ER E+ E
Sbjct: 147 KTIDALLTCGVGQKLGIFAGSGVGKSTLMG----MIVKNSKAPIKVVALIGERGREIPEF 202
Query: 178 MQRSVRGE-----VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARA 232
+Q+++ G+ +I +T D+ A A + A+ E KDV+ ++DS+TR A A
Sbjct: 203 IQKNLGGKLDDTVIIVATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMA 262
Query: 233 YNTVIPASGKV-LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIY 291
+ A G+ T G + L + E G++T T L++ G M D I
Sbjct: 263 QREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVD-GDDMSDPIA 321
Query: 292 EEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLR-KLLYSL 349
++ + + + L R L + +YP IN+ S +R +I + K+W + K L SL
Sbjct: 322 DQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSDIISPE--HKLWARKFKRLNSL 378
>UNIPROTKB|Q3BYK0 [details] [associations]
symbol:hrcN "HrcN protein" species:316273 "Xanthomonas
campestris pv. vesicatoria str. 85-10" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004100 InterPro:IPR005714 InterPro:IPR013380
InterPro:IPR020003 Pfam:PF00006 Pfam:PF02874 PROSITE:PS00152
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006754
GO:GO:0046961 EMBL:AM039952 GenomeReviews:AM039952_GR
eggNOG:COG1157 HOGENOM:HOG000257876 GO:GO:0030257 GO:GO:0030254
PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 KO:K03224
TIGRFAMs:TIGR02546 RefSeq:YP_362163.1 ProteinModelPortal:Q3BYK0
SMR:Q3BYK0 STRING:Q3BYK0 GeneID:3733197 KEGG:xcv:XCV0432
PATRIC:24090214 OMA:LSRVMTQ ProtClustDB:PRK09099 Uniprot:Q3BYK0
Length = 442
Score = 190 (71.9 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 72/241 (29%), Positives = 114/241 (47%)
Query: 117 TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175
TG RI+D + +G+GQR + A+ GKS ++ A + + +++LI ER EV
Sbjct: 149 TGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCD----VNVIVLIGERGREV 204
Query: 176 TEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITR 228
E + G V+ +T D + + A + A+ + V++++DS+TR
Sbjct: 205 REFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTR 264
Query: 229 LARAYNTVIPASGKVLTG-GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIE--TGSR 285
ARA + A+G+ T G + R A + E GS+T T L E TGS
Sbjct: 265 FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERA-GMGESGSITAFYTVLAEDDTGS- 322
Query: 286 MDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKL 345
D I EE +G + + L R +A K YPAI++ S +R ++ D Q LR+L
Sbjct: 323 --DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPYDHSQAAGRLRRL 380
Query: 346 L 346
L
Sbjct: 381 L 381
>TIGR_CMR|CHY_0996 [details] [associations]
symbol:CHY_0996 "flagellum-specific ATP synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009288 "bacterial-type flagellum" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR004100 InterPro:IPR005714 InterPro:IPR022425
Pfam:PF00006 Pfam:PF02874 SMART:SM00382 GO:GO:0005524 GO:GO:0005737
GO:GO:0009058 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016887
GO:GO:0015992 GO:GO:0009296 GO:GO:0001539 GO:GO:0009288
eggNOG:COG1157 HOGENOM:HOG000257876 KO:K02412 GO:GO:0030257
GO:GO:0030254 PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026
RefSeq:YP_359843.1 ProteinModelPortal:Q3ADE1 SMR:Q3ADE1
STRING:Q3ADE1 GeneID:3728773 KEGG:chy:CHY_0996 PATRIC:21275125
OMA:ASKEHKN BioCyc:CHYD246194:GJCN-995-MONOMER TIGRFAMs:TIGR03497
Uniprot:Q3ADE1
Length = 434
Score = 189 (71.6 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 73/248 (29%), Positives = 122/248 (49%)
Query: 108 RNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA-IMIV 165
R I+ K TG + ID G+GQR + A GKS +L IA ++EA + ++
Sbjct: 134 RRIK-KPFATGIKAIDGPLTCGEGQRLGIFAGSGVGKSTLLGMIAR-----YAEADVNVI 187
Query: 166 MLIDERPEEVTEMQRSVRGE------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDV 219
LI ER EV + + GE ++ +T ++PA V+ A + A+ E K V
Sbjct: 188 ALIGERGREVLDFIENDLGEGIKKSVLVVATSEQPALFRVKGAFVATAIAEYFREQGKKV 247
Query: 220 IILLDSITRLARAYNTVIPASGKVLTG-GVDSNALQRPKRFFGAARNIEEGGSLTIIATA 278
++++DS+TR A A + A+G+ + G + + A N ++ GS+T T
Sbjct: 248 LLMMDSLTRFAMAQREIGLAAGEPPSSRGYTPSVFALLPKLVERAGN-DDKGSITAFYTV 306
Query: 279 LIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQK 338
L+E G ++ I + +G + + L R+LA K YPAI+L S +R L+ + L
Sbjct: 307 LVE-GDDFNEPIADAVRGLLDGHIVLSRQLAGKGHYPAIDLLASNSRLMPELVDEQHLAL 365
Query: 339 IWVLRKLL 346
+R++L
Sbjct: 366 TLKMREIL 373
>UNIPROTKB|O34171 [details] [associations]
symbol:fliI "Flagellum-specific ATP synthase"
species:176299 "Agrobacterium fabrum str. C58" [GO:0006928
"cellular component movement" evidence=IMP] [GO:0009288
"bacterial-type flagellum" evidence=IMP] InterPro:IPR000194
InterPro:IPR003593 InterPro:IPR005714 InterPro:IPR020003
InterPro:IPR022426 Pfam:PF00006 PROSITE:PS00152 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0006754 GO:GO:0006928
GO:GO:0016887 GO:GO:0015992 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0009288 GO:GO:0043064 EMBL:U95165 PIR:AH2644 PIR:H97426
RefSeq:NP_353584.1 ProteinModelPortal:O34171 STRING:O34171
GeneID:1132595 KEGG:atu:Atu0557 PATRIC:20810817 eggNOG:COG1157
HOGENOM:HOG000257876 KO:K02412 OMA:DGDNHND ProtClustDB:PRK06002
GO:GO:0030257 GO:GO:0030254 PANTHER:PTHR15184:SF9
TIGRFAMs:TIGR03498 TIGRFAMs:TIGR01026 Uniprot:O34171
Length = 473
Score = 186 (70.5 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 69/246 (28%), Positives = 117/246 (47%)
Query: 117 TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175
TG R ID+ +P+ GQR + A GKS +L +A A + +++ L+ ER EV
Sbjct: 166 TGVRAIDIFSPLCLGQRLGIFAGSGVGKSTLLSMLAKADAFDK----VVIALVGERGREV 221
Query: 176 TEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITR 228
E G+ V+A++ + P R + V A+ + +V++++DS+TR
Sbjct: 222 REFIEDTMGDNMSKSVAVVATSDESPMLRKMAPLSAVTI-AEHFRDQGDNVLLIIDSVTR 280
Query: 229 LARAYNTVIPASGK--VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRM 286
A A V ASG+ V G S + P+ A E G++T I + L++ G
Sbjct: 281 FAHAIREVAVASGEPPVARGYPASVFTELPRLLERAGPGAEGTGTITAIVSILVD-GDNH 339
Query: 287 DDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+D I + +G + + L+R LAE+ YP IN S +R + D+ + + L+ L+
Sbjct: 340 NDPIADSTRGILDGHIVLDRSLAEEGRYPPINPLASISRLAKKAWTPDQEKLVSRLKALV 399
Query: 347 YSLTMT 352
+ T
Sbjct: 400 HRFEET 405
>NCBI_NP|NP_353584.1 [details] [associations]
symbol:fliI "flagellum-specificATPsynthase"
species:176299 "Agrobacterium fabrum str. C58" [GO:0006928
"cellular component movement" evidence=IMP] [GO:0009288
"bacterial-type flagellum" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISS] REFSEQ:NC_003062 Ncbi:NP_353584
Length = 473
Score = 186 (70.5 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 69/246 (28%), Positives = 117/246 (47%)
Query: 117 TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175
TG R ID+ +P+ GQR + A GKS +L +A A + +++ L+ ER EV
Sbjct: 166 TGVRAIDIFSPLCLGQRLGIFAGSGVGKSTLLSMLAKADAFDK----VVIALVGERGREV 221
Query: 176 TEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITR 228
E G+ V+A++ + P R + V A+ + +V++++DS+TR
Sbjct: 222 REFIEDTMGDNMSKSVAVVATSDESPMLRKMAPLSAVTI-AEHFRDQGDNVLLIIDSVTR 280
Query: 229 LARAYNTVIPASGK--VLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRM 286
A A V ASG+ V G S + P+ A E G++T I + L++ G
Sbjct: 281 FAHAIREVAVASGEPPVARGYPASVFTELPRLLERAGPGAEGTGTITAIVSILVD-GDNH 339
Query: 287 DDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+D I + +G + + L+R LAE+ YP IN S +R + D+ + + L+ L+
Sbjct: 340 NDPIADSTRGILDGHIVLDRSLAEEGRYPPINPLASISRLAKKAWTPDQEKLVSRLKALV 399
Query: 347 YSLTMT 352
+ T
Sbjct: 400 HRFEET 405
>UNIPROTKB|O07025 [details] [associations]
symbol:fliI "Flagellum-specific ATP synthase" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR005714 InterPro:IPR020003 Pfam:PF00006 PROSITE:PS00152
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006754
GO:GO:0016887 GO:GO:0015992 InterPro:IPR018538 Pfam:PF09378
EMBL:AE000511 GenomeReviews:AE000511_GR GO:GO:0043064
eggNOG:COG1157 KO:K02412 GO:GO:0030257 GO:GO:0030254
PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 EMBL:Y08620 PIR:D64697
RefSeq:NP_208211.1 RefSeq:YP_006935343.1 ProteinModelPortal:O07025
DIP:DIP-3391N IntAct:O07025 MINT:MINT-185321 GeneID:13870632
GeneID:899875 KEGG:heo:C694_07345 KEGG:hpy:HP1420 PATRIC:20594239
OMA:LQPFEQS ProtClustDB:PRK08472 Uniprot:O07025
Length = 434
Score = 178 (67.7 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 71/276 (25%), Positives = 127/276 (46%)
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTE-MQ 179
ID + GKGQ+ + A GKS ++ IT I ++ LI ER E+ E ++
Sbjct: 148 IDGLLTCGKGQKLGIFAGSGVGKSTLMG----MITRGCLAPIKVIALIGERGREIPEFIE 203
Query: 180 RSVRGE------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY 233
++++G+ V+A++ D P R A + A+ DV+ ++DS+TR A A
Sbjct: 204 KNLKGDLSSCVLVVATSDDSPLMRKYG-AFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQ 262
Query: 234 NTVIPASGKVLTG-GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYE 292
+ A G+ T G +AL + A E GS+T + L+E G + D I +
Sbjct: 263 REIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSITAFFSVLVE-GDDLSDPIAD 321
Query: 293 EFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR-REELLIQDDKL--QKIWVLRKLLYSL 349
+ + + + L R L + +YP IN+ S +R ++++ + L +K L LL
Sbjct: 322 QTRSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIISESQNLCARKFRRLYALLKEN 381
Query: 350 TMTSFTVSLFFIKRTIPVEKNLLKDACMPLVLAETQ 385
M + + + +++ + K A M LA+ +
Sbjct: 382 EML-IRIGSYQMGNDKELDEAIKKKALMEQFLAQDE 416
>UNIPROTKB|Q6XVW8 [details] [associations]
symbol:spa47 "Spa47" species:623 "Shigella flexneri"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000194
InterPro:IPR003593 InterPro:IPR004100 InterPro:IPR005714
InterPro:IPR020003 Pfam:PF00006 Pfam:PF02874 PROSITE:PS00152
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0009058
GO:GO:0016887 GO:GO:0015992 GO:GO:0030257 GO:GO:0030254
PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 EMBL:AY206439
ProteinModelPortal:Q6XVW8 IntAct:Q6XVW8 Uniprot:Q6XVW8
Length = 430
Score = 177 (67.4 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 66/229 (28%), Positives = 105/229 (45%)
Query: 107 ERNIESKENITG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA-IMI 164
ER K +TG ++ID + G+GQR + AS GK+ ++ + HS A I +
Sbjct: 128 ERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIE-----HSGADIYV 182
Query: 165 VMLIDERPEEVTEM-------QRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKK 217
+ LI ER EVTE ++ R ++ +T D + A + A+
Sbjct: 183 IGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTEGH 242
Query: 218 DVIILLDSITRLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIA 276
V + +DS+TR ARA V A+G+ G + R ++ GGS+T
Sbjct: 243 KVALFIDSLTRYARALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITAFY 302
Query: 277 TALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
T L+E D + EE + + ++L R LA+K +PAI+ KS +R
Sbjct: 303 TVLLEDDD-FADPLAEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISR 350
>TIGR_CMR|SPO_0183 [details] [associations]
symbol:SPO_0183 "H+-transporting two-sector ATPase,
flagellum-specific" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009288 "bacterial-type flagellum" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0015031 "protein transport"
evidence=ISS] [GO:0042777 "plasma membrane ATP synthesis coupled
proton transport" evidence=ISS] [GO:0046933 "proton-transporting
ATP synthase activity, rotational mechanism" evidence=ISS]
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR005714
InterPro:IPR020003 Pfam:PF00006 PROSITE:PS00152 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0009058 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016887 HOGENOM:HOG000257876
KO:K02412 GO:GO:0030257 GO:GO:0030254 PANTHER:PTHR15184:SF9
TIGRFAMs:TIGR01026 RefSeq:YP_165453.1 ProteinModelPortal:Q5LWX0
GeneID:3195322 KEGG:sil:SPO0183 PATRIC:23373613 OMA:AAYMTMA
ProtClustDB:CLSK933176 Uniprot:Q5LWX0
Length = 445
Score = 176 (67.0 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 62/214 (28%), Positives = 107/214 (50%)
Query: 121 IDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM-- 178
++ + PI +GQR L A GKS +L +A ++ ++A+ +V LI ER EV E
Sbjct: 151 LNTLLPIVRGQRVGLFAGSGVGKSSLLATLAKSM---QADAV-VVALIGERGREVNEFVA 206
Query: 179 -----QRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY 233
+ R ++A+T D+ A + A + A+ L + +V+ L DSITR A A+
Sbjct: 207 KALGPEGLARSVIVAATSDQSALVRRRCAWAAMTVAESLRDEGLNVLYLADSITRFAEAH 266
Query: 234 NTVIPASGKV--LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIY 291
+ A G+ L G S A E+ G +T + + L+ GS MD+ +
Sbjct: 267 REISAAMGEAPALRGYPPSVTPLITGLCERAGPGTEKQGDITGVFSVLV-AGSDMDEPVA 325
Query: 292 EEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+ +G + + L R +AE+ +PAI++++S +R
Sbjct: 326 DILRGVLDGHIVLNREIAERGRFPAIDISRSVSR 359
>UNIPROTKB|Q9KQ71 [details] [associations]
symbol:VC_2130 "Flagellum-specific ATP synthase FliI"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR000194 InterPro:IPR003593
InterPro:IPR005714 InterPro:IPR020003 InterPro:IPR020005
Pfam:PF00006 PROSITE:PS00152 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0016887
GO:GO:0015986 GO:GO:0009296 GO:GO:0001539 KO:K02412 GO:GO:0030257
GO:GO:0030254 PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 OMA:INDDSYH
GO:GO:0033178 GO:GO:0016820 TIGRFAMs:TIGR03496 ProtClustDB:PRK08972
PIR:B82114 RefSeq:NP_231761.1 ProteinModelPortal:Q9KQ71 SMR:Q9KQ71
DNASU:2613386 GeneID:2613386 KEGG:vch:VC2130 PATRIC:20083287
Uniprot:Q9KQ71
Length = 439
Score = 175 (66.7 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 64/237 (27%), Positives = 107/237 (45%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+ I+ + +GKGQR L A GKS+ L + T +++V LI ER EV E
Sbjct: 148 KAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQ----VVVVGLIGERGREVKEF 203
Query: 179 QRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231
+ R V+A+ D ++ + L A+ + DV++L+DS+TR A+
Sbjct: 204 IEEILGVDGRQRSVVVAAPADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQ 263
Query: 232 AYNTVIPASGKV-LTGGVDSNALQR-PKRFFGAARNIEEGGSLTIIATALIETGSRMDDV 289
A + + G+ T G + + P A GS+T T L E G + D
Sbjct: 264 AQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTE-GDDLQDP 322
Query: 290 IYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
I + + + + L R +A+ YPAI++ KS +R + D+ L +R++L
Sbjct: 323 IADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQIL 379
>TIGR_CMR|VC_2130 [details] [associations]
symbol:VC_2130 "flagellum-specific ATP synthase FliI"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0009296 "flagellum
assembly" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR005714
InterPro:IPR020003 InterPro:IPR020005 Pfam:PF00006 PROSITE:PS00152
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016887 GO:GO:0015986 GO:GO:0009296
GO:GO:0001539 KO:K02412 GO:GO:0030257 GO:GO:0030254
PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 OMA:INDDSYH GO:GO:0033178
GO:GO:0016820 TIGRFAMs:TIGR03496 ProtClustDB:PRK08972 PIR:B82114
RefSeq:NP_231761.1 ProteinModelPortal:Q9KQ71 SMR:Q9KQ71
DNASU:2613386 GeneID:2613386 KEGG:vch:VC2130 PATRIC:20083287
Uniprot:Q9KQ71
Length = 439
Score = 175 (66.7 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 64/237 (27%), Positives = 107/237 (45%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEVTEM 178
+ I+ + +GKGQR L A GKS+ L + T +++V LI ER EV E
Sbjct: 148 KAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQ----VVVVGLIGERGREVKEF 203
Query: 179 QRSV-------RGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLAR 231
+ R V+A+ D ++ + L A+ + DV++L+DS+TR A+
Sbjct: 204 IEEILGVDGRQRSVVVAAPADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQ 263
Query: 232 AYNTVIPASGKV-LTGGVDSNALQR-PKRFFGAARNIEEGGSLTIIATALIETGSRMDDV 289
A + + G+ T G + + P A GS+T T L E G + D
Sbjct: 264 AQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTE-GDDLQDP 322
Query: 290 IYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
I + + + + L R +A+ YPAI++ KS +R + D+ L +R++L
Sbjct: 323 IADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQIL 379
>UNIPROTKB|Q9Z7J8 [details] [associations]
symbol:yscN "YopN" species:83558 "Chlamydia pneumoniae"
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR000194
InterPro:IPR003593 InterPro:IPR004100 InterPro:IPR005714
InterPro:IPR013380 InterPro:IPR020003 Pfam:PF00006 Pfam:PF02874
PROSITE:PS00152 SMART:SM00382 GO:GO:0005524 GO:GO:0005737
GO:GO:0006754 GO:GO:0046961 OMA:AVVPNVR EMBL:AE001363 EMBL:AE002161
EMBL:BA000008 EMBL:AE009440 GenomeReviews:AE001363_GR
GenomeReviews:AE002161_GR GenomeReviews:AE009440_GR
GenomeReviews:BA000008_GR HOGENOM:HOG000257876 GO:GO:0030257
GO:GO:0030254 PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026 KO:K03224
TIGRFAMs:TIGR02546 HSSP:P03002 EMBL:AB035949 PIR:C72046 PIR:H86578
RefSeq:NP_224903.1 RefSeq:NP_300763.1 RefSeq:NP_444591.1
RefSeq:NP_877006.1 ProteinModelPortal:Q9Z7J8 SMR:Q9Z7J8
GeneID:1467413 GeneID:895269 GeneID:919477 GeneID:963661
KEGG:cpa:CP0039 KEGG:cpj:CPj0707 KEGG:cpn:CPn0707 KEGG:cpt:CpB0734
ProtClustDB:PRK06315 BioCyc:CPNE115711:GI7B-39-MONOMER
BioCyc:CPNE115713:GHEY-710-MONOMER
BioCyc:CPNE138677:GH8N-698-MONOMER
BioCyc:CPNE182082:GH4N-731-MONOMER Uniprot:Q9Z7J8
Length = 442
Score = 175 (66.7 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 66/240 (27%), Positives = 113/240 (47%)
Query: 117 TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA-IMIVMLIDERPEE 174
TG R ID + + +GQR + A GKS +L IA N EA + ++ LI ER E
Sbjct: 150 TGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIAR----NAEEADVNVIALIGERGRE 205
Query: 175 VTEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSIT 227
V E GE ++ ST D+ + + A + A+ + K V++++DS+T
Sbjct: 206 VREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVT 265
Query: 228 RLARAYNTVIPASGKV-LTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRM 286
R ARA V A+G+ G + R + + G++T T L+ G M
Sbjct: 266 RFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERS-GASDKGTITAFYTVLV-AGDDM 323
Query: 287 DDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
++ + +E K + + L LA+ YPAI++ S +R ++ +++ + I R++L
Sbjct: 324 NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL 383
>TIGR_CMR|BA_1681 [details] [associations]
symbol:BA_1681 "flagellum-specific ATP synthase, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0009288 "bacterial-type
flagellum" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR005714
InterPro:IPR022425 Pfam:PF00006 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0009058 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016887 GO:GO:0009296 GO:GO:0001539
GO:GO:0009288 HOGENOM:HOG000257876 KO:K02412 GO:GO:0030257
GO:GO:0030254 PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026
TIGRFAMs:TIGR03497 HSSP:P03002 RefSeq:NP_844124.1
RefSeq:YP_018318.1 RefSeq:YP_027830.1 ProteinModelPortal:Q81SH1
DNASU:1086211 EnsemblBacteria:EBBACT00000008468
EnsemblBacteria:EBBACT00000018364 EnsemblBacteria:EBBACT00000022458
GeneID:1086211 GeneID:2817527 GeneID:2851814 KEGG:ban:BA_1681
KEGG:bar:GBAA_1681 KEGG:bat:BAS1563 OMA:YFRDEGN
ProtClustDB:PRK06793 BioCyc:BANT260799:GJAJ-1635-MONOMER
BioCyc:BANT261594:GJ7F-1701-MONOMER Uniprot:Q81SH1
Length = 434
Score = 174 (66.3 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 66/238 (27%), Positives = 115/238 (48%)
Query: 117 TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175
TG + ID + IG GQ+ + A GKS +L IA N I ++ L+ ER EV
Sbjct: 144 TGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAK----NAKADINVISLVGERGREV 199
Query: 176 TEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITR 228
+ R GE V+ +T DE ++ A++ A+ + +V++++DS+TR
Sbjct: 200 KDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTR 259
Query: 229 LARAYNTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDD 288
A A +V A ++ GG K+ + ++G S+T I T L++ G ++
Sbjct: 260 FADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGKTQKG-SITGIYTVLVD-GDDLNG 317
Query: 289 VIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLL 346
+ + +G + + L+R LA YPAI++ S +R E ++ + Q +RK+L
Sbjct: 318 PVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSSNHWQLANEMRKIL 375
>TIGR_CMR|GSU_0413 [details] [associations]
symbol:GSU_0413 "flagellum-specific ATP synthase FliI"
species:243231 "Geobacter sulfurreducens PCA" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0009288 "bacterial-type
flagellum" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR000194 InterPro:IPR003593 InterPro:IPR004100
InterPro:IPR005714 InterPro:IPR020003 Pfam:PF00006 Pfam:PF02874
PROSITE:PS00152 SMART:SM00382 GO:GO:0005524 GO:GO:0005737
GO:GO:0009058 GO:GO:0016887 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0015992 HOGENOM:HOG000257876 KO:K02412 GO:GO:0030257
GO:GO:0030254 PANTHER:PTHR15184:SF9 TIGRFAMs:TIGR01026
RefSeq:NP_951472.1 ProteinModelPortal:Q74G36 SMR:Q74G36
GeneID:2686522 KEGG:gsu:GSU0413 PATRIC:22023570 OMA:FRDNKTL
ProtClustDB:CLSK827816 BioCyc:GSUL243231:GH27-358-MONOMER
Uniprot:Q74G36
Length = 441
Score = 158 (60.7 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 60/217 (27%), Positives = 106/217 (48%)
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEA-IMIVMLIDERPEEVTE 177
R I+ + G+GQR ++A GKS +L IA ++EA + ++ LI ER E+ E
Sbjct: 148 RAINALLTCGEGQRVGIMAGSGVGKSTLLGMIAR-----YTEADVNVIALIGERGRELRE 202
Query: 178 -MQRSVRGE------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLA 230
+++ ++ E V+ +T D+P ++ A + A+ K V++++DS TR A
Sbjct: 203 FIEKDLQEEGLKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATRFA 262
Query: 231 RAYNTVIPASGKVLT--GGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDD 288
A V A G+ T G S PK ++ GS+T + T L+E G ++
Sbjct: 263 MAMREVGLAIGEPPTTKGYTPSVFAALPKLLERTGSFLD--GSITGLYTVLVE-GDDFNE 319
Query: 289 VIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
I + + + + L R LA + +YP +++ S +R
Sbjct: 320 PISDAMRSILDGHIVLNRELAARAIYPPLDILASASR 356
>TIGR_CMR|CJE_0102 [details] [associations]
symbol:CJE_0102 "ATP synthase F1, beta subunit"
species:195099 "Campylobacter jejuni RM1221" [GO:0015986 "ATP
synthesis coupled proton transport" evidence=ISS] [GO:0045261
"proton-transporting ATP synthase complex, catalytic core F(1)"
evidence=ISS] [GO:0046933 "proton-transporting ATP synthase
activity, rotational mechanism" evidence=ISS] HAMAP:MF_01347
InterPro:IPR000194 InterPro:IPR000793 InterPro:IPR003593
InterPro:IPR004100 InterPro:IPR005722 InterPro:IPR020003
Pfam:PF00006 Pfam:PF00306 Pfam:PF02874 PROSITE:PS00152
SMART:SM00382 GO:GO:0005886 GO:GO:0005524 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0015991 GO:GO:0046933 GO:GO:0015986
GO:GO:0008553 GO:GO:0045261 SUPFAM:SSF50615 SUPFAM:SSF47917
eggNOG:COG0055 Gene3D:1.10.1140.10 InterPro:IPR024034
PANTHER:PTHR15184:SF8 TIGRFAMs:TIGR01039 HOGENOM:HOG000009605
OMA:NHYDIAR KO:K02112 ProtClustDB:PRK09280 RefSeq:YP_178126.1
HSSP:P00829 ProteinModelPortal:Q5HX59 STRING:Q5HX59 PRIDE:Q5HX59
GeneID:3230865 KEGG:cjr:CJE0102 PATRIC:20041911
BioCyc:CJEJ195099:GJC0-106-MONOMER Uniprot:Q5HX59
Length = 465
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 65/276 (23%), Positives = 120/276 (43%)
Query: 60 IRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNXXXXXXXXXXXXERNIESKENITG- 118
I VP GE+ L +I V G+ + + + FD +++ +S+ TG
Sbjct: 78 ISVPV-GEK--VLGRIFNVTGDLIDEGEEIS-FDKKWAIHRDPPAFEDQSTKSEIFETGI 133
Query: 119 RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEE---- 174
+++DL+AP KG + L GK++I+ + H + HS + + ER E
Sbjct: 134 KVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELIHNVAFKHS-GYSVFAGVGERTREGNDL 192
Query: 175 VTEMQRSVRGEVIASTF---DEPAYRHVQVAEMVLEKAKRLV-EMKKDVIILLDSITRLA 230
EM+ S + +A + +EP ++A L A+ EM DV++ +D+I R +
Sbjct: 193 YNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFS 252
Query: 231 RAYNTVIPASGKVLTG-GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDV 289
++ + + G++ + G +F + ++G S+T + + D
Sbjct: 253 QSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKG-SITSVQAVYVPADDLTDPA 311
Query: 290 IYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
F V L R +AEK +YPA++ S +R
Sbjct: 312 PATVFAHLDATTV-LNRAIAEKGIYPAVDPLDSTSR 346
>TIGR_CMR|DET_0564 [details] [associations]
symbol:DET_0564 "ATP synthase F1, beta subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0015986 "ATP
synthesis coupled proton transport" evidence=ISS] [GO:0045261
"proton-transporting ATP synthase complex, catalytic core F(1)"
evidence=ISS] [GO:0046933 "proton-transporting ATP synthase
activity, rotational mechanism" evidence=ISS] HAMAP:MF_01347
InterPro:IPR000194 InterPro:IPR000793 InterPro:IPR003593
InterPro:IPR004100 InterPro:IPR005722 InterPro:IPR020003
Pfam:PF00006 Pfam:PF00306 Pfam:PF02874 PROSITE:PS00152
SMART:SM00382 GO:GO:0005886 GO:GO:0005524 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0015991 GO:GO:0046933 GO:GO:0015986
GO:GO:0008553 GO:GO:0045261 SUPFAM:SSF50615 SUPFAM:SSF47917
eggNOG:COG0055 Gene3D:1.10.1140.10 InterPro:IPR024034
PANTHER:PTHR15184:SF8 TIGRFAMs:TIGR01039 HOGENOM:HOG000009605
KO:K02112 OMA:NNIAKGH ProtClustDB:PRK09280 RefSeq:YP_181307.1
ProteinModelPortal:Q3Z8Z2 SMR:Q3Z8Z2 STRING:Q3Z8Z2 GeneID:3230136
KEGG:det:DET0564 PATRIC:21608197 BioCyc:DETH243164:GJNF-564-MONOMER
Uniprot:Q3Z8Z2
Length = 464
Score = 131 (51.2 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 57/229 (24%), Positives = 102/229 (44%)
Query: 110 IESKENI--TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVM 166
+ES + TG ++IDLIAP +G + + GK++++Q + I T H E +
Sbjct: 120 LESSAQVLETGLKVIDLIAPFARGGKIGALGGAGVGKTVLIQELIRNIATEH-EGFSVFA 178
Query: 167 LIDERPEEVTEMQRSVRGE-VIAST---FDE----PAYRHVQVAEMVLEKAKRLV-EMKK 217
+ ER E ++ + V+ T F + PA R +++A L A+ E ++
Sbjct: 179 GVGERSREGNDLWHEMEDSGVLPKTTMVFGQMNELPAVR-LRIALTGLTMAEYFRDEERQ 237
Query: 218 DVIILLDSITRLARAYNTVIPASGKVLTG-GVDSNALQRPKRFFGAARNIEEGGSLTIIA 276
DV++ +D+I R A V G++ + G + ++G S+T
Sbjct: 238 DVLLFIDNIYRYTLAGMEVSALLGRMPSAVGYQPTLATEMGALQERIASTKQG-SITSFQ 296
Query: 277 TALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+ D + F G + + LER LAE+ +YPA++ S +R
Sbjct: 297 AVYVPADDYTDPGVVATF-GHLDAMIALERSLAEQALYPAVDPLASNSR 344
>TIGR_CMR|CHY_2547 [details] [associations]
symbol:CHY_2547 "ATP synthase F1, alpha subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS]
[GO:0045261 "proton-transporting ATP synthase complex, catalytic
core F(1)" evidence=ISS] [GO:0046933 "proton-transporting ATP
synthase activity, rotational mechanism" evidence=ISS]
HAMAP:MF_01346 InterPro:IPR000194 InterPro:IPR000793
InterPro:IPR004100 InterPro:IPR005294 InterPro:IPR020003
Pfam:PF00006 Pfam:PF00306 Pfam:PF02874 PROSITE:PS00152
GO:GO:0005886 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0015991 GO:GO:0046933 GO:GO:0046961 GO:GO:0015986
GO:GO:0045261 Gene3D:2.40.30.20 InterPro:IPR023366 eggNOG:COG0056
SUPFAM:SSF50615 SUPFAM:SSF47917 TIGRFAMs:TIGR00962
PANTHER:PTHR15184:SF3 HOGENOM:HOG000130111 KO:K02111
ProtClustDB:PRK09281 OMA:GSDRDIK RefSeq:YP_361340.1
ProteinModelPortal:Q3A944 SMR:Q3A944 STRING:Q3A944 PRIDE:Q3A944
GeneID:3727648 KEGG:chy:CHY_2547 PATRIC:21278141
BioCyc:CHYD246194:GJCN-2546-MONOMER Uniprot:Q3A944
Length = 501
Score = 128 (50.1 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 59/228 (25%), Positives = 105/228 (46%)
Query: 117 TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175
TG + ID + PIG+GQR L++ ++GK+ I I I +++ I I + I ++ V
Sbjct: 148 TGIKAIDSMIPIGRGQRELIIGDRQTGKTAIA--IDTIINQKNTDVICIYVAIGQKASTV 205
Query: 176 TEMQRSVRGE-------VIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITR 228
++ ++++ V+++T +PA + +E K V+++ D +++
Sbjct: 206 AKVVQTLKDHGAMDYTIVVSATASDPAPLLYLAPYAGCAMGEEFMEQGKHVLVVYDDLSK 265
Query: 229 LARAYNTVI-----PASGKVLTGGV---DSNALQRPKRFFGAARNIEE--GGSLTIIATA 278
A AY + P + G V S L+R AA+ +E GGSLT A
Sbjct: 266 QAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER------AAKLSDEYGGGSLT--ALP 317
Query: 279 LIET-GSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
+IET + I + +++LE L V PA+N+ S +R
Sbjct: 318 IIETQAGDVSAYIPTNVISITDGQIYLESDLFYAGVRPAVNVGLSVSR 365
>TIGR_CMR|BA_5547 [details] [associations]
symbol:BA_5547 "ATP synthase F1, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0015986 "ATP
synthesis coupled proton transport" evidence=ISS] [GO:0045262
"plasma membrane proton-transporting ATP synthase complex,
catalytic core F(1)" evidence=ISS] [GO:0046933 "proton-transporting
ATP synthase activity, rotational mechanism" evidence=ISS]
HAMAP:MF_01347 InterPro:IPR000194 InterPro:IPR000793
InterPro:IPR003593 InterPro:IPR004100 InterPro:IPR005722
InterPro:IPR020003 Pfam:PF00006 Pfam:PF00306 Pfam:PF02874
PROSITE:PS00152 SMART:SM00382 GO:GO:0005886 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0015991
GO:GO:0046933 GO:GO:0015986 GO:GO:0008553 GO:GO:0045261
SUPFAM:SSF50615 SUPFAM:SSF47917 eggNOG:COG0055 Gene3D:1.10.1140.10
InterPro:IPR024034 PANTHER:PTHR15184:SF8 TIGRFAMs:TIGR01039
HOGENOM:HOG000009605 KO:K02112 OMA:NNIAKGH ProtClustDB:PRK09280
RefSeq:NP_847705.1 RefSeq:YP_022216.1 RefSeq:YP_031394.1
HSSP:P07677 ProteinModelPortal:Q81JZ5 SMR:Q81JZ5 PRIDE:Q81JZ5
DNASU:1085230 EnsemblBacteria:EBBACT00000012259
EnsemblBacteria:EBBACT00000015483 EnsemblBacteria:EBBACT00000021432
GeneID:1085230 GeneID:2819044 GeneID:2852682 KEGG:ban:BA_5547
KEGG:bar:GBAA_5547 KEGG:bat:BAS5155
BioCyc:BANT260799:GJAJ-5230-MONOMER
BioCyc:BANT261594:GJ7F-5408-MONOMER Uniprot:Q81JZ5
Length = 469
Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
Identities = 53/219 (24%), Positives = 94/219 (42%)
Query: 117 TG-RIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPEEV 175
TG +++DL+AP KG + L GK++++Q + + I H I + + ER E
Sbjct: 135 TGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHG-GISVFAGVGERTREG 193
Query: 176 TEMQRSVRGE-VIAST------FDEPAYRHVQVAEMVLEKAKRLV-EMKKDVIILLDSIT 227
++ + VI T +EP +VA L A+ E +DV++ +D+I
Sbjct: 194 NDLYHEMSDSGVIKKTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIF 253
Query: 228 RLARAYNTVIPASGKVLTG-GVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRM 286
R +A + V G++ + G + + +G S+T I +
Sbjct: 254 RFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNKG-SITSIQAVYVPADDYT 312
Query: 287 DDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTR 325
D F + +LERRL + +YPA++ S +R
Sbjct: 313 DPAPATTFAHL-DATTNLERRLTQMGIYPAVDPLASTSR 350
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 592 580 0.00081 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 604 (64 KB)
Total size of DFA: 248 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.54u 0.10s 48.64t Elapsed: 00:00:06
Total cpu time: 48.55u 0.10s 48.65t Elapsed: 00:00:06
Start: Thu Aug 15 11:06:58 2013 End: Thu Aug 15 11:07:04 2013