BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3766
(470 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0AC33|FUMA_ECOLI Fumarate hydratase class I, aerobic OS=Escherichia coli (strain
K12) GN=fumA PE=1 SV=2
Length = 548
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 215/453 (47%), Gaps = 28/453 (6%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + + GV Y N
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEA---ALARGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVL---MQDINMNSIIK 183
P L +++++ + T+G CPP + IGGT + L K+ D +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + EL EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFH-----YVNLNTLTKK---EVSSWR 295
R+ +N G K L + P +K V+LN K+ ++S +
Sbjct: 322 RNIKAKINRQGIWIEK---LEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYP 378
Query: 296 SGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGP 355
L LNG I+ GRD AH +++ + GE +P + IYY GP G GP
Sbjct: 379 VSTRLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGP 438
Query: 356 TTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-AAYLISKAIK 414
TTA RMD + + + + G + M+ K RS ++ KK YL ++GG AA L +IK
Sbjct: 439 TTAGRMDSYVDQLQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIK 498
Query: 415 SAKIICFEDLGMEAIYEFNVENMPVTVAIDSLG 447
S + + + +LGMEAI++ VE+ P + +D G
Sbjct: 499 SLECVEYPELGMEAIWKIEVEDFPAFILVDDKG 531
>sp|P0AC34|FUMA_ECOL6 Fumarate hydratase class I, aerobic OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=fumA PE=3 SV=2
Length = 548
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 215/453 (47%), Gaps = 28/453 (6%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + + GV Y N
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEA---ALARGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVL---MQDINMNSIIK 183
P L +++++ + T+G CPP + IGGT + L K+ D +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + EL EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFH-----YVNLNTLTKK---EVSSWR 295
R+ +N G K L + P +K V+LN K+ ++S +
Sbjct: 322 RNIKAKINRQGIWIEK---LEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYP 378
Query: 296 SGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGP 355
L LNG I+ GRD AH +++ + GE +P + IYY GP G GP
Sbjct: 379 VSTRLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGP 438
Query: 356 TTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-AAYLISKAIK 414
TTA RMD + + + + G + M+ K RS ++ KK YL ++GG AA L +IK
Sbjct: 439 TTAGRMDSYVDQLQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIK 498
Query: 415 SAKIICFEDLGMEAIYEFNVENMPVTVAIDSLG 447
S + + + +LGMEAI++ VE+ P + +D G
Sbjct: 499 SLECVEYPELGMEAIWKIEVEDFPAFILVDDKG 531
>sp|P14407|FUMB_ECOLI Fumarate hydratase class I, anaerobic OS=Escherichia coli (strain
K12) GN=fumB PE=1 SV=2
Length = 548
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/451 (29%), Positives = 215/451 (47%), Gaps = 24/451 (5%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + +++GV Y +N+
Sbjct: 89 QFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGD---EETLSKGVYNTYIE-DNL 144
Query: 73 LRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AMLN 127
+ + + NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 145 RYSQNAALDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLT 204
Query: 128 PSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSII----- 182
P L +++++ + T+G CPP + IGGT + L K V + + +
Sbjct: 205 PG-KLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAETNL--KTVKLASAHYYDELPTEGN 261
Query: 183 KNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAA 242
++G + +L EL + LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 262 EHGQAFRDVQLEQELLEEAQKLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSA 320
Query: 243 TRHGHIILNGSGPVFMKPPSLSNW--PKIKFTTNNKKFHYVNLNTLTKK---EVSSWRSG 297
R+ +N G K P+ + V+LN K+ ++S +
Sbjct: 321 DRNIKAKINREGIWIEKLEHNPGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVS 380
Query: 298 EILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTT 357
L L G I+ GRD AH +++ ++ G+++P + IYY GP G GPTT
Sbjct: 381 TRLSLTGTIIVGRDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTT 440
Query: 358 ASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-AAYLISKAIKSA 416
A RMD + +L+ G + M+ K RS ++ K YL ++GG AA L ++IK
Sbjct: 441 AGRMDSYVDLLQSHGGSMIMLAKGNRSQQVTDACHKHGGFYLGSIGGPAAVLAQQSIKHL 500
Query: 417 KIICFEDLGMEAIYEFNVENMPVTVAIDSLG 447
+ + + +LGMEAI++ VE+ P + +D G
Sbjct: 501 ECVAYPELGMEAIWKIEVEDFPAFILVDDKG 531
>sp|Q8X4P8|FUMA_ECO57 Fumarate hydratase class I, aerobic OS=Escherichia coli O157:H7
GN=fumA PE=3 SV=3
Length = 548
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 214/453 (47%), Gaps = 28/453 (6%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + + GV Y N
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEA---ALARGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVL---MQDINMNSIIK 183
P L +++++ + T+G CPP + IGGT + L K+ D +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + EL EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFH-----YVNLNTLTKK---EVSSWR 295
R+ +N G K L + P +K V+LN K+ ++S +
Sbjct: 322 RNIKAKINRQGIWIEK---LEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYP 378
Query: 296 SGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGP 355
L LNG I+ GRD AH +++ + GE +P + IYY GP G GP
Sbjct: 379 VSTRLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGP 438
Query: 356 TTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-AAYLISKAIK 414
TTA RMD + + + G + M+ K RS ++ KK YL ++GG AA L +IK
Sbjct: 439 TTAGRMDSYVDQLQALGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIK 498
Query: 415 SAKIICFEDLGMEAIYEFNVENMPVTVAIDSLG 447
S + + + +LGMEAI++ VE+ P + +D G
Sbjct: 499 SLECVEYPELGMEAIWKIEVEDFPAFILVDDKG 531
>sp|P40720|FUMA_SALTY Fumarate hydratase class I, aerobic OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=fumA PE=3 SV=3
Length = 580
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 210/452 (46%), Gaps = 26/452 (5%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + + GV Y +N+
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEA---ALARGVYNTYIE-DNL 144
Query: 73 LRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AMLN 127
+ + + NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 145 RYSQNAALDMYKEVNTGTNLPAQIDLYSVDGDEYKFLCIAKGGGSANKTYLYQETKALLT 204
Query: 128 PSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPK 187
P L ++++ + T+G CPP + IGGT +A L K V + +
Sbjct: 205 PG-KLKNYLVDKMRTLGTAACPPYHIAFVIGGTSAEANL--KTVKLASAKYYDALPTEGN 261
Query: 188 NKIEELR-----LELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAA 242
+ R EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 262 EHGQAFRDIELEKELLLEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSA 320
Query: 243 TRHGHIILNGSG---PVFMKPPSLSNWPKIKFTTNNKKFHYVNLN---TLTKKEVSSWRS 296
R+ +N G + P P+ + V+LN + +++S +
Sbjct: 321 DRNIKAKINRDGIWIEKLERNPG-KYIPEALRQAGEGEAVRVDLNRPMSEILQQLSQYPV 379
Query: 297 GEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPT 356
L LNG I+ GRD AH +++ + +GE +P + IYY GP G GPT
Sbjct: 380 STRLSLNGTIIVGRDIAHAKLKERMDRGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPT 439
Query: 357 TASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-AAYLISKAIKS 415
TA RMD + + + + G + M+ K RS ++ KK YL ++GG AA L +IK
Sbjct: 440 TAGRMDSYVDQLQSQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKR 499
Query: 416 AKIICFEDLGMEAIYEFNVENMPVTVAIDSLG 447
+ + + +LGMEAI++ VE+ P + +D G
Sbjct: 500 LECVEYPELGMEAIWKIEVEDFPAFILVDDKG 531
>sp|Q04718|FUMA_GEOSE Fumarate hydratase class I, aerobic OS=Geobacillus
stearothermophilus GN=fumA PE=3 SV=1
Length = 514
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 224/483 (46%), Gaps = 56/483 (11%)
Query: 4 GIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVR 63
G A ++A I N +M + PICQDTG+ +K+ + + +I I + +
Sbjct: 37 GTRAAMSLATITENIKMADENVSPICQDTGLPTFKIKVPVGINQIQIKETIKKAIAQATK 96
Query: 64 RGYTNPNNILRASIVSDPHFIRKNTQDNTPA---VINMELVPGNFLDIKIASKGGGSENK 120
G PN++ +N+ DN V+ E +++D+++ KGGG ENK
Sbjct: 97 DGKLRPNSV--------DSLTGENSGDNLGEGLPVVKFEQWEKDYMDVRLILKGGGCENK 148
Query: 121 -------TKFAMLNPSDSLVDWIMKTV-----PTMGAGWCPPGILGIGIGGTPEKAMLMA 168
+ L + +D I K + G G C G +G+GIGG +A
Sbjct: 149 NIQYSLPCELEGLGRAGRDLDGIRKCILHAVYQAQGQG-CSAGFIGVGIGGDRSAGYDLA 207
Query: 169 KKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTH 228
K+ L ++++ P ++ +L + N LGIG G GG +T+L K+
Sbjct: 208 KEQLFREVD-----DVNPNEELRQLEEYIMENANKLGIGTMGFGGETTLLGCKVGAMHRI 262
Query: 229 AASKPVAIIPNCAATRH---------GHII----LNGSGPVFMKPPSLSNWPKIKFTTNN 275
AS V++ NC A R G II +G F + + + +
Sbjct: 263 PASFFVSVAYNCWAFRRLGVHIDPNTGEIIKWLYQDGEDVDFQENAAQEE----HLASTD 318
Query: 276 KKFHYVNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNR 334
+ + L +T++++ + G+++ +NG I TGRDA H +Y++ PV+ N +
Sbjct: 319 SERRVITLQAPITEEQIRELKVGDVVRINGIIYTGRDAIH---KYLMD--HDAPVDLNGQ 373
Query: 335 VIYYVGPI---NPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLI 391
+IY+ GP+ + N + AGPTT+ R + + I++K G+ A++GK K ++ +
Sbjct: 374 IIYHCGPVMLKDENGNWEVKAAGPTTSIREEPYQGDIMKKFGIRAVMGKGGMGQKTLQAL 433
Query: 392 KKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENMPVTVAIDSLGKSI 450
K+ YL A+GGAA + I++ + + + G+ EA++ V++ V +DS G S+
Sbjct: 434 KEHGGVYLNAIGGAAQYYADCIEAVEGVDLLEFGIPEAMWHLRVKDFTAVVTMDSHGNSL 493
Query: 451 HID 453
H D
Sbjct: 494 HED 496
>sp|Q58690|FUMA_METJA Putative fumarate hydratase subunit alpha OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1294 PE=3 SV=1
Length = 285
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 133/248 (53%), Gaps = 18/248 (7%)
Query: 7 AKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGY 66
+K+ + I+ N+++ + + P+CQDTG+ VFLKIG N+ I + I EGV++
Sbjct: 38 SKNTLKAIIENNKIAEETQVPLCQDTGVPIVFLKIGKNINSSEIMKIIEE-IKEGVKKAT 96
Query: 67 TNPNNILRASIVSDPHFIRKNTQDNT---PAVINMELVPGNFLDIKIAS--KGGGSENKT 121
LR ++V R+N + N IN+E +I+I + KG GSEN +
Sbjct: 97 EEVP--LRPNVVH--PLTRENFKTNVGLNSPFINIEFDESLDREIEIIAFPKGAGSENMS 152
Query: 122 KFAMLNPSDSLV---DWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINM 178
ML PSD + +++++T+ G CPP ++GIGIGGT + A+ +AKK L++ I
Sbjct: 153 ALKMLKPSDGIEGIKNFVLETIANAGGKPCPPIVVGIGIGGTADVALKLAKKALLRKIG- 211
Query: 179 NSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIP 238
+ +I L EL KINSLGIGA G+GG T LDV I + H AS PV I
Sbjct: 212 ----ERHRDKEIANLEKELLEKINSLGIGAMGLGGDITALDVFIEIAGCHTASLPVGICI 267
Query: 239 NCAATRHG 246
C A R
Sbjct: 268 QCWADRRA 275
>sp|Q58034|FUMB_METJA Putative fumarate hydratase subunit beta OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0617 PE=3 SV=1
Length = 195
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
Query: 283 LNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI 342
N LTKK+V + G+I+ LNGKI T RD AH +I ML EK+P + N +IY+ GPI
Sbjct: 5 FNKLTKKDVKKLKVGDIVYLNGKIYTARDEAHLKIIEMLKSNEKLPFDLNESIIYHAGPI 64
Query: 343 NPVRNE--VIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLV 400
N+ V GPTT++RM+ ++ + A++GK +++K + + YL
Sbjct: 65 MKKVNDSWVCVSIGPTTSARMNDVEEEFIKLTNISAIVGKGGMKKELLKTFEDYGVVYLA 124
Query: 401 AVGGAAYLISKAIKSAKIICF-EDLGM-EAIYEFNVENM-PVTVAIDSLGKSIHIDGPKK 457
A GG A L++ ++K + F ++LGM EA++E V N P+ VA+DS G SI+ + KK
Sbjct: 125 APGGCAALLANSVKRVDNVYFLDELGMPEAVWELEVNNFGPLIVAMDSHGNSIYEEVNKK 184
>sp|Q8XBK7|TTDA_ECO57 L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli O157:H7
GN=ttdA PE=3 SV=1
Length = 303
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 13/231 (5%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATIKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVP-GNFLDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V ++VP G+ +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIVPDGDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG-----SRHPNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNG 252
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G ++++
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHA 289
>sp|Q1R6S0|TTDA_ECOUT L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli (strain
UTI89 / UPEC) GN=ttdA PE=3 SV=1
Length = 303
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 13/227 (5%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVP-GNFLDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V ++VP G+ +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIVPDGDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG-----SRHPNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHI 248
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G +
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTL 285
>sp|Q8FDG8|TTDA_ECOL6 L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ttdA PE=3 SV=1
Length = 303
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 13/227 (5%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVP-GNFLDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V ++VP G+ +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIVPDGDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG-----SRHPNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHI 248
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G +
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTL 285
>sp|Q3YXI2|TTDA_SHISS L(+)-tartrate dehydratase subunit alpha OS=Shigella sonnei (strain
Ss046) GN=ttdA PE=3 SV=1
Length = 303
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 13/231 (5%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVPGNF-LDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V +++P N +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG-----SRHPNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNG 252
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G ++++
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHA 289
>sp|Q31WX3|TTDA_SHIBS L(+)-tartrate dehydratase subunit alpha OS=Shigella boydii serotype
4 (strain Sb227) GN=ttdA PE=3 SV=1
Length = 303
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 13/231 (5%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVPGNF-LDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V +++P N +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG-----SRHPNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNG 252
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G ++++
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHA 289
>sp|P05847|TTDA_ECOLI L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli (strain
K12) GN=ttdA PE=1 SV=3
Length = 303
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 13/231 (5%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVPGNF-LDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V +++P N +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG-----SRHPNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNG 252
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G ++++
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHA 289
>sp|Q0TD45|TTDA_ECOL5 L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=ttdA PE=3 SV=1
Length = 303
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 13/231 (5%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVPGNF-LDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V +++P N +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG-----SRHPNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNG 252
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G ++++
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHA 289
>sp|Q83Q43|TTDA_SHIFL L(+)-tartrate dehydratase subunit alpha OS=Shigella flexneri
GN=ttdA PE=3 SV=5
Length = 270
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 13/197 (6%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVPGNF-LDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V +++P N +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG-----SRHPNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVL 218
N LGIG QG+ G S+V+
Sbjct: 239 NRLGIGPQGLTGNSSVM 255
>sp|P0AC37|TTDB_SHIFL L(+)-tartrate dehydratase subunit beta OS=Shigella flexneri GN=ttdB
PE=3 SV=1
Length = 201
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 289 KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI---NPV 345
+++ R G+++ L G ++T RD H R ++ IP + N + I++ GPI N
Sbjct: 12 EDLQDIRVGDVIYLTGTLVTCRDVCHRR---LIELKRPIPYDLNGKAIFHAGPIVRKNGD 68
Query: 346 RNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGA 405
+ E++ GPTT+ RM+ F +E+ G+ ++GK + +K K +++ G
Sbjct: 69 KWEMVS-VGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGC 127
Query: 406 AYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSI 450
A L + ++ + + + +LGM E+++ V+ P+ V+ID+ G ++
Sbjct: 128 AVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNL 174
>sp|Q1R6R9|TTDB_ECOUT L(+)-tartrate dehydratase subunit beta OS=Escherichia coli (strain
UTI89 / UPEC) GN=ttdB PE=3 SV=1
Length = 201
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 289 KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI---NPV 345
+++ R G+++ L G ++T RD H R ++ IP + N + I++ GPI N
Sbjct: 12 EDLQDIRVGDVIYLTGTLVTCRDVCHRR---LIELKRPIPYDLNGKAIFHAGPIVRKNGD 68
Query: 346 RNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGA 405
+ E++ GPTT+ RM+ F +E+ G+ ++GK + +K K +++ G
Sbjct: 69 KWEMVS-VGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGC 127
Query: 406 AYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSI 450
A L + ++ + + + +LGM E+++ V+ P+ V+ID+ G ++
Sbjct: 128 AVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNL 174
>sp|P0AC35|TTDB_ECOLI L(+)-tartrate dehydratase subunit beta OS=Escherichia coli (strain
K12) GN=ttdB PE=1 SV=1
Length = 201
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 289 KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI---NPV 345
+++ R G+++ L G ++T RD H R ++ IP + N + I++ GPI N
Sbjct: 12 EDLQDIRVGDVIYLTGTLVTCRDVCHRR---LIELKRPIPYDLNGKAIFHAGPIVRKNGD 68
Query: 346 RNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGA 405
+ E++ GPTT+ RM+ F +E+ G+ ++GK + +K K +++ G
Sbjct: 69 KWEMVS-VGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGC 127
Query: 406 AYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSI 450
A L + ++ + + + +LGM E+++ V+ P+ V+ID+ G ++
Sbjct: 128 AVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNL 174
>sp|P0AC36|TTDB_ECOL6 L(+)-tartrate dehydratase subunit beta OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ttdB PE=3 SV=1
Length = 201
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 289 KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI---NPV 345
+++ R G+++ L G ++T RD H R ++ IP + N + I++ GPI N
Sbjct: 12 EDLQDIRVGDVIYLTGTLVTCRDVCHRR---LIELKRPIPYDLNGKAIFHAGPIVRKNGD 68
Query: 346 RNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGA 405
+ E++ GPTT+ RM+ F +E+ G+ ++GK + +K K +++ G
Sbjct: 69 KWEMVS-VGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGC 127
Query: 406 AYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSI 450
A L + ++ + + + +LGM E+++ V+ P+ V+ID+ G ++
Sbjct: 128 AVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNL 174
>sp|Q0TD44|TTDB_ECOL5 L(+)-tartrate dehydratase subunit beta OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=ttdB PE=3 SV=1
Length = 201
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 289 KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI---NPV 345
+++ R G+++ L G ++T RD H R ++ IP + N + I++ GPI N
Sbjct: 12 EDLQDIRVGDVIYLTGTLVTCRDVCHRR---LIELKRPIPYDLNGKAIFHAGPIVRKNGD 68
Query: 346 RNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGA 405
+ E++ GPTT+ RM+ F +E+ G+ ++GK + +K K +++ G
Sbjct: 69 KWEMVS-VGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGC 127
Query: 406 AYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSI 450
A L + ++ + + + +LGM E+++ V+ P+ V+ID+ G ++
Sbjct: 128 AVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNL 174
>sp|Q8XBK5|TTDB_ECO57 L(+)-tartrate dehydratase subunit beta OS=Escherichia coli O157:H7
GN=ttdB PE=3 SV=1
Length = 201
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Query: 297 GEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI---NPVRNEVIGPA 353
G+++ L G ++T RD H R ++ +P + N + I++ GPI N + E++
Sbjct: 20 GDVIYLTGTLVTCRDVCHRR---LIELKRPLPYDLNGKAIFHAGPIVRKNGDKWEMVS-V 75
Query: 354 GPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAI 413
GPTT+ RM+ F +E+ G+ ++GK + +K K +++ G A L + +
Sbjct: 76 GPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGCAVLAATQV 135
Query: 414 KSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSI 450
+ + + + +LGM E+++ V+ P+ V+ID+ G ++
Sbjct: 136 EEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNL 174
>sp|Q3YXI1|TTDB_SHISS L(+)-tartrate dehydratase subunit beta OS=Shigella sonnei (strain
Ss046) GN=ttdB PE=3 SV=1
Length = 201
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 88/167 (52%), Gaps = 9/167 (5%)
Query: 289 KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI---NPV 345
+++ R +++ L G ++T RD H R ++ IP + N + I++ GPI N
Sbjct: 12 EDLQDIRVDDVIYLTGTLVTCRDVCHRR---LIELKRPIPYDLNGKAIFHAGPIVRKNGD 68
Query: 346 RNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGA 405
+ E++ GPTT+ RM+ F +E+ G+ ++GK + +K K +++ G
Sbjct: 69 KWEMVS-VGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGC 127
Query: 406 AYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSI 450
A L + ++ + + + +LGM E+++ V+ P+ V+ID+ G ++
Sbjct: 128 AVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNL 174
>sp|Q31WX2|TTDB_SHIBS L(+)-tartrate dehydratase subunit beta OS=Shigella boydii serotype
4 (strain Sb227) GN=ttdB PE=3 SV=1
Length = 201
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 88/167 (52%), Gaps = 9/167 (5%)
Query: 289 KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI---NPV 345
+++ R G+++ L G ++T RD H R ++ IP + N + I++ GPI N
Sbjct: 12 EDLQDIRVGDVIYLTGTLVTCRDVCHRR---LIELKRPIPYDLNGKAIFHAGPIVRKNGD 68
Query: 346 RNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGA 405
+ E++ GPTT+ RM+ F +E+ G+ ++GK + +K K +++ G
Sbjct: 69 KWEMVS-VGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGC 127
Query: 406 AYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSI 450
A L + ++ + + + +LGM E+++ + P+ V+ID+ G ++
Sbjct: 128 AVLAATQVEEIEEVHWTELGMPESLWVCRGKEFGPLIVSIDTHGNNL 174
>sp|P84206|HBBA_GYMUN Hemoglobin anodic subunit beta OS=Gymnothorax unicolor PE=1 SV=1
Length = 147
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 195 LELFNKINSLGIGAQGMGGLSTVLDVKIMMYP-THAA-------SKPVAIIPNCAATRHG 246
L L+ KIN IGAQ MG L +++YP TH S P AI+ N +HG
Sbjct: 12 LTLWKKINVEEIGAQAMGRL-------LIVYPWTHRHFASFGNLSTPSAIMSNDKVAKHG 64
Query: 247 HIILNG 252
++ G
Sbjct: 65 ATVMGG 70
>sp|Q6AJQ1|DXS_DESPS 1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=dxs PE=3 SV=1
Length = 645
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 20/165 (12%)
Query: 308 TGRDAAHN--RIQYMLSKGE-KIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHF 364
T RD A I + KG+ +P N + VGP N ++I GP AS F
Sbjct: 274 TVRDTAKGPALIHVLTKKGKGYLPAEENPDAFHGVGPFNRQTGKIIKKKGP--ASYTTVF 331
Query: 365 TNLILE-----------KIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAI 413
+LE ++A G S+ IA A+ AA L S+ +
Sbjct: 332 GQTMLELGKKNKNIVAISAAMVAGTGLTPFSEAYPDRFFDVGIAEQHAITFAAGLASQGM 391
Query: 414 KSAKII--CFEDLGMEAI-YEFNVENMPVTVAIDSLGKSIHIDGP 455
+ I F M+ I ++ + N+PVT+AID G + DGP
Sbjct: 392 RPVVAIYSSFYQRAMDQIIHDVCIPNLPVTLAIDRAG-VVGDDGP 435
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,369,933
Number of Sequences: 539616
Number of extensions: 7988480
Number of successful extensions: 19924
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 19830
Number of HSP's gapped (non-prelim): 40
length of query: 470
length of database: 191,569,459
effective HSP length: 121
effective length of query: 349
effective length of database: 126,275,923
effective search space: 44070297127
effective search space used: 44070297127
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)