Your job contains 1 sequence.
>psy3766
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINE
GVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENK
TKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNS
IIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNC
AATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEIL
LLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASR
MDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIIC
FEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYISIENSNLT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3766
(470 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CPS_3613 - symbol:CPS_3613 "putative fumarate hy... 1391 2.9e-142 1
TIGR_CMR|SO_2222 - symbol:SO_2222 "fumarate hydratase, cl... 1379 5.5e-141 1
UNIPROTKB|Q9KSF2 - symbol:VC1304 "Fumarate hydratase, cla... 1376 1.1e-140 1
TIGR_CMR|VC_1304 - symbol:VC_1304 "fumarate hydratase, cl... 1376 1.1e-140 1
TIGR_CMR|SPO_1498 - symbol:SPO_1498 "fumarate hydratase, ... 1226 8.9e-125 1
TIGR_CMR|CHY_1375 - symbol:CHY_1375 "fumarate hydratase, ... 487 1.8e-46 1
TIGR_CMR|DET_0453 - symbol:DET_0453 "fumarate hydratase, ... 460 1.3e-43 1
TIGR_CMR|CHY_0061 - symbol:CHY_0061 "fumarate hydratase, ... 450 1.5e-42 1
TIGR_CMR|GSU_0994 - symbol:GSU_0994 "fumarate hydratase, ... 449 1.9e-42 1
UNIPROTKB|P14407 - symbol:fumB species:83333 "Escherichia... 422 1.4e-39 1
UNIPROTKB|P0AC33 - symbol:fumA species:83333 "Escherichia... 414 9.9e-39 1
TIGR_CMR|CHY_0062 - symbol:CHY_0062 "fumarate hydratase, ... 350 6.0e-32 1
TIGR_CMR|BA_0423 - symbol:BA_0423 "fumarate hydratase, cl... 345 2.3e-31 1
TIGR_CMR|CHY_1374 - symbol:CHY_1374 "fumarate hydratase, ... 330 7.9e-30 1
TIGR_CMR|DET_0454 - symbol:DET_0454 "fumarate hydratase, ... 291 1.4e-25 1
UNIPROTKB|P05847 - symbol:ttdA "L-tartrate dehydratase, a... 225 4.3e-18 1
UNIPROTKB|P0AC35 - symbol:ttdB "L-tartrate dehydratase, b... 164 2.0e-11 1
>TIGR_CMR|CPS_3613 [details] [associations]
symbol:CPS_3613 "putative fumarate hydratase, class I"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004333
"fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
InterPro:IPR004647 InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 GO:GO:0006091 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0004333 KO:K01676
Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 eggNOG:COG1951 RefSeq:YP_270281.1 STRING:Q47Y39
GeneID:3519670 KEGG:cps:CPS_3613 PATRIC:21470155
HOGENOM:HOG000262369 OMA:MAEAYER ProtClustDB:CLSK864432
BioCyc:CPSY167879:GI48-3635-MONOMER Uniprot:Q47Y39
Length = 507
Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
Identities = 263/458 (57%), Positives = 338/458 (73%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AAKDAIAQILINSRM A+ KRPICQDTGIV F+K+GM V++ + ++ +++EG
Sbjct: 39 EESTAAKDAIAQILINSRMSAQGKRPICQDTGIVTCFVKVGMEVQWDKTDMTVQQMVDEG 98
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
RR Y NP+N LRASIV DP R NT+DNTPAV+++++VPG L+I IA+KGGGSENKT
Sbjct: 99 TRRAYLNPDNPLRASIVKDPAGKRINTKDNTPAVVHIDMVPGAGLEIMIAAKGGGSENKT 158
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
K AMLNPSDS+ DW++KT+PTMGAGWCPP T EKA ++AK+ LM +N+ +
Sbjct: 159 KMAMLNPSDSIADWVVKTLPTMGAGWCPPGMLGIGIGGTAEKAGVLAKESLMDPVNIQDL 218
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
I+ GP+N EELRLE+F ++N LGIGAQG+GGL+TV+DVKI PTHAASKPV +IPNCA
Sbjct: 219 IERGPQNAEEELRLEIFERVNKLGIGAQGLGGLTTVVDVKINSVPTHAASKPVVMIPNCA 278
Query: 242 ATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILL 301
ATRH H L+GSGP + PP L WP+I + + VN++ L K ++S W++GE +L
Sbjct: 279 ATRHVHFHLDGSGPADLTPPKLEEWPEITWEVG-ENVRRVNVDDLGKADISDWKTGETVL 337
Query: 302 LNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRM 361
L+G ILTGRDAAH RIQ ML+KGEK+PV+F ++ IYYVGP++ + +E +GPAGPTTA+RM
Sbjct: 338 LSGTILTGRDAAHKRIQDMLAKGEKLPVDFTDKFIYYVGPVDAIGDEAVGPAGPTTATRM 397
Query: 362 DHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGGAAYLXXXXXXXXXXXCF 421
D FT ++L + GL+ IGKAER YL+AVGGAAYL F
Sbjct: 398 DKFTEMMLAETGLLGTIGKAERGAQTCESIKNHKSVYLMAVGGAAYLVSKAIKKAKVVAF 457
Query: 422 EDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWK 459
ED+GMEAIYEF VE+MPVTVA+DS G+S H+ GP+ WK
Sbjct: 458 EDMGMEAIYEFVVEDMPVTVAVDSTGESAHVTGPEIWK 495
>TIGR_CMR|SO_2222 [details] [associations]
symbol:SO_2222 "fumarate hydratase, class I, anaerobic,
putative" species:211586 "Shewanella oneidensis MR-1" [GO:0004333
"fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
InterPro:IPR004647 InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 GO:GO:0006091 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0004333 KO:K01676
Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 HOGENOM:HOG000262369 OMA:MAEAYER
ProtClustDB:CLSK864432 RefSeq:NP_717819.1 ProteinModelPortal:Q8EEY7
GeneID:1169959 KEGG:son:SO_2222 PATRIC:23524075 Uniprot:Q8EEY7
Length = 516
Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
Identities = 262/469 (55%), Positives = 345/469 (73%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AAKDAIAQILINSRM A+ KRP+CQDTGIV F+K+GM V++ + +I +++EG
Sbjct: 48 EQSAAAKDAIAQILINSRMSAEGKRPLCQDTGIVTTFVKVGMGVKWDKTDMTIQQMVDEG 107
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VRR YTNP+N LRASIV+DP RKNT+DNTP+V+++++VPGN +++ IA+KGGGSENK
Sbjct: 108 VRRAYTNPDNPLRASIVADPAGSRKNTKDNTPSVVHIDMVPGNHVEVAIAAKGGGSENKA 167
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
K MLNPSD + W+ KT+PTMGAGWCPP T EKA ++AK+ LM+ ++++ +
Sbjct: 168 KMVMLNPSDDIAAWVEKTLPTMGAGWCPPGMLGIGIGGTAEKAAVLAKEALMESVDIHEL 227
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
+ G + E+LRL++F + N+LGIGAQG+GGL+TVLDVKI PTHAASKPV +IPNCA
Sbjct: 228 MARGAQTTEEKLRLDIFERANNLGIGAQGLGGLTTVLDVKIKSAPTHAASKPVVMIPNCA 287
Query: 242 ATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILL 301
ATRH H L+G+GP + PPSLS+WP+I + VNL+T+T+ ++ W+SGE LL
Sbjct: 288 ATRHVHFHLDGTGPADLAPPSLSDWPEITREVGSD-VRRVNLDTVTQADIEQWQSGETLL 346
Query: 302 LNGKILTGRDAAHNRIQYMLSKGEKIP--VNFNNRVIYYVGPINPVRNEVIGPAGPTTAS 359
L+GK+LTGRDAAH RIQ ++ GE +P V+F + IYYVGP++PV NEV+GPAGPTTA+
Sbjct: 347 LSGKMLTGRDAAHKRIQSLIESGEGLPEGVDFTGKFIYYVGPVDPVGNEVVGPAGPTTAT 406
Query: 360 RMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGGAAYLXXXXXXXXXXX 419
RMD FT+L+L+K GL+ MIGKAER YL+AVGGAAYL
Sbjct: 407 RMDKFTDLMLDKTGLMGMIGKAERGPATVESIKKHKAVYLMAVGGAAYLVSKAIKKSRVV 466
Query: 420 CFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYISIENSN 468
F DLGMEAIYEF+V++MPVTVA+DS G + H GP WK ++I N+N
Sbjct: 467 AFADLGMEAIYEFDVQDMPVTVAVDSNGVNAHETGPAIWK--VNIANAN 513
>UNIPROTKB|Q9KSF2 [details] [associations]
symbol:VC1304 "Fumarate hydratase, class I, putative"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
InterPro:IPR004647 InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 GenomeReviews:AE003852_GR GO:GO:0006099
GO:GO:0004333 KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00722 TIGRFAMs:TIGR00723 ProtClustDB:CLSK864432
OMA:EWAPNTE EMBL:AE004210 PIR:C82216 RefSeq:NP_230949.1
ProteinModelPortal:Q9KSF2 DNASU:2614758 GeneID:2614758
KEGG:vch:VC1304 PATRIC:20081688 Uniprot:Q9KSF2
Length = 505
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 259/464 (55%), Positives = 343/464 (73%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AAKD+IAQILINSRM A+ RPICQDTGIV F+ IGM V++ + ++ +++EG
Sbjct: 39 EESQAAKDSIAQILINSRMSAEGHRPICQDTGIVTCFVNIGMGVQWDSTDMTVQQMVDEG 98
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VR+ YTNP+N LRAS++ DP R NT+DNTPAV+++ +VPG+ +DI+IA+KGGGSENKT
Sbjct: 99 VRQAYTNPDNPLRASVLMDPAGKRINTKDNTPAVVHINMVPGDKVDIQIAAKGGGSENKT 158
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
K MLNPSD + +W+ KTVP MGAGWCPP T EKA ++AK+ LM+ I+++ +
Sbjct: 159 KMVMLNPSDDIAEWVEKTVPLMGAGWCPPGMLGIGIGGTAEKAAVLAKEALMEHIDIHEL 218
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
I+ GP+N EELRL++FN++N LGIGAQG+GGL+TV+DVKI PTHAASKPV +IPNCA
Sbjct: 219 IERGPQNAEEELRLDIFNRVNKLGIGAQGLGGLTTVVDVKIKSAPTHAASKPVCMIPNCA 278
Query: 242 ATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILL 301
ATRH H L+GSGP + PP L +WP+I + VNL+ +T++E+ +W++GE +L
Sbjct: 279 ATRHVHFTLDGSGPAQLTPPKLEDWPQITWEAGANT-RRVNLDNITREEIQTWKTGETVL 337
Query: 302 LNGKILTGRDAAHNRIQYMLSKGEKIP--VNFNNRVIYYVGPINPVRNEVIGPAGPTTAS 359
L+GKILTGRDAAH RIQ ML KGEK+P V+ ++ IYYVGP++ V +EV+GPAGPTT++
Sbjct: 338 LSGKILTGRDAAHKRIQTMLQKGEKLPDSVDLKDKFIYYVGPVDAVGDEVVGPAGPTTST 397
Query: 360 RMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGGAAYLXXXXXXXXXXX 419
RMD FT+++LE++G++ MIGKAER YL+AVGGAAYL
Sbjct: 398 RMDKFTDMMLEEVGVMGMIGKAERGPATVESIKKHKAVYLMAVGGAAYLVAKAIKKARVV 457
Query: 420 CFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYIS 463
FEDLGMEAIYEF VE+MPVTVA+DS G + H GP W+ I+
Sbjct: 458 AFEDLGMEAIYEFEVEDMPVTVAVDSTGANAHQIGPDTWRVKIA 501
>TIGR_CMR|VC_1304 [details] [associations]
symbol:VC_1304 "fumarate hydratase, class I, putative"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004333
"fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
InterPro:IPR004647 InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 GenomeReviews:AE003852_GR GO:GO:0006099
GO:GO:0004333 KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00722 TIGRFAMs:TIGR00723 ProtClustDB:CLSK864432
OMA:EWAPNTE EMBL:AE004210 PIR:C82216 RefSeq:NP_230949.1
ProteinModelPortal:Q9KSF2 DNASU:2614758 GeneID:2614758
KEGG:vch:VC1304 PATRIC:20081688 Uniprot:Q9KSF2
Length = 505
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 259/464 (55%), Positives = 343/464 (73%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AAKD+IAQILINSRM A+ RPICQDTGIV F+ IGM V++ + ++ +++EG
Sbjct: 39 EESQAAKDSIAQILINSRMSAEGHRPICQDTGIVTCFVNIGMGVQWDSTDMTVQQMVDEG 98
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VR+ YTNP+N LRAS++ DP R NT+DNTPAV+++ +VPG+ +DI+IA+KGGGSENKT
Sbjct: 99 VRQAYTNPDNPLRASVLMDPAGKRINTKDNTPAVVHINMVPGDKVDIQIAAKGGGSENKT 158
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
K MLNPSD + +W+ KTVP MGAGWCPP T EKA ++AK+ LM+ I+++ +
Sbjct: 159 KMVMLNPSDDIAEWVEKTVPLMGAGWCPPGMLGIGIGGTAEKAAVLAKEALMEHIDIHEL 218
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
I+ GP+N EELRL++FN++N LGIGAQG+GGL+TV+DVKI PTHAASKPV +IPNCA
Sbjct: 219 IERGPQNAEEELRLDIFNRVNKLGIGAQGLGGLTTVVDVKIKSAPTHAASKPVCMIPNCA 278
Query: 242 ATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILL 301
ATRH H L+GSGP + PP L +WP+I + VNL+ +T++E+ +W++GE +L
Sbjct: 279 ATRHVHFTLDGSGPAQLTPPKLEDWPQITWEAGANT-RRVNLDNITREEIQTWKTGETVL 337
Query: 302 LNGKILTGRDAAHNRIQYMLSKGEKIP--VNFNNRVIYYVGPINPVRNEVIGPAGPTTAS 359
L+GKILTGRDAAH RIQ ML KGEK+P V+ ++ IYYVGP++ V +EV+GPAGPTT++
Sbjct: 338 LSGKILTGRDAAHKRIQTMLQKGEKLPDSVDLKDKFIYYVGPVDAVGDEVVGPAGPTTST 397
Query: 360 RMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGGAAYLXXXXXXXXXXX 419
RMD FT+++LE++G++ MIGKAER YL+AVGGAAYL
Sbjct: 398 RMDKFTDMMLEEVGVMGMIGKAERGPATVESIKKHKAVYLMAVGGAAYLVAKAIKKARVV 457
Query: 420 CFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYIS 463
FEDLGMEAIYEF VE+MPVTVA+DS G + H GP W+ I+
Sbjct: 458 AFEDLGMEAIYEFEVEDMPVTVAVDSTGANAHQIGPDTWRVKIA 501
>TIGR_CMR|SPO_1498 [details] [associations]
symbol:SPO_1498 "fumarate hydratase, class I, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004333 "fumarate
hydratase activity" evidence=ISS] [GO:0006099 "tricarboxylic acid
cycle" evidence=ISS] InterPro:IPR004646 InterPro:IPR004647
InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683 PIRSF:PIRSF001394
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006091 GO:GO:0004333
KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 HOGENOM:HOG000262369 ProtClustDB:CLSK864432
RefSeq:YP_166739.1 ProteinModelPortal:Q5LTB6 GeneID:3195115
KEGG:sil:SPO1498 PATRIC:23376313 OMA:EWAPNTE Uniprot:Q5LTB6
Length = 502
Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
Identities = 229/459 (49%), Positives = 317/459 (69%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AK A+AQIL+NSRMCA +RPICQDTG N+ +K+G+ + F+ S+ ++ +EG
Sbjct: 39 EENPGAKAAMAQILVNSRMCAMGRRPICQDTGAANIHVKVGVQAK-TDFSRSLQEICDEG 97
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
R+GY N LRAS+V DP RKN+ DNTP ++ +E+V G+ +++++A+KGGGSENK+
Sbjct: 98 TRQGYQRDTNPLRASVVVDPFGARKNSGDNTPCMLTVEMVAGDTIEVEVAAKGGGSENKS 157
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
KF LNPS ++ DW+++TV T+GAGWCPP +KAM +AK+ L + ++M+ +
Sbjct: 158 KFTTLNPSGNVADWVVQTVETLGAGWCPPGVLGIGVGGNADKAMALAKQALSEPLDMSDL 217
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
++ GP +K EELRLE+++++N+LGIGAQG+GG++TVLDVKI +PTHAAS PV +IPNCA
Sbjct: 218 LRRGPSDKTEELRLEIYDRVNALGIGAQGLGGVTTVLDVKIKSFPTHAASLPVGLIPNCA 277
Query: 242 ATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILL 301
ATRH H L+GSG PPS+ +P I + ++L+ L ++S G+ LL
Sbjct: 278 ATRHVHFTLDGSGAAEFTPPSMDLYPDILLDAAGAQATRLDLDDLNDTVLASLEPGQTLL 337
Query: 302 LNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRM 361
L+G + TGRDAAH R+ ML KGE +PV+ + IYYVGP++ V +EVIGPAGPTT++RM
Sbjct: 338 LSGTLYTGRDAAHKRMVDMLDKGEPLPVDLKGKAIYYVGPVDAVGDEVIGPAGPTTSTRM 397
Query: 362 DHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGGAAYLXXXXXXXXXXXCF 421
D FT+ IL GL M+GKAER AYL+AVGGAAYL F
Sbjct: 398 DKFTDRILGDTGLKVMVGKAERGPVAIEAIAKHKAAYLIAVGGAAYLVSKAIKAARPVAF 457
Query: 422 EDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKK 460
+DLGMEAIYE VE+MPV+VA+D+ G SIH GP KW++
Sbjct: 458 QDLGMEAIYELRVEDMPVSVAVDTQGNSIHQTGPAKWRR 496
>TIGR_CMR|CHY_1375 [details] [associations]
symbol:CHY_1375 "fumarate hydratase, alpha subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009061 "anaerobic
respiration" evidence=ISS] InterPro:IPR004646 Pfam:PF05681
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016829
TIGRFAMs:TIGR00722 eggNOG:COG1951 HOGENOM:HOG000225707
RefSeq:YP_360207.1 STRING:Q3ACC7 GeneID:3727041 KEGG:chy:CHY_1375
PATRIC:21275883 KO:K01677 OMA:IETYPTH ProtClustDB:PRK06246
BioCyc:CHYD246194:GJCN-1374-MONOMER Uniprot:Q3ACC7
Length = 280
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 108/252 (42%), Positives = 149/252 (59%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ K + +++ N+++ E+ PICQDTG +FL+IG +V G G +HD IN+G
Sbjct: 39 EESEVGKKILQRVIENAQIAKDEELPICQDTGTAVIFLEIGQDVHLVG--GDLHDAINQG 96
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VR GY+ LR SIV DP R NT DNTPAV+++++VPG+ + I +A KGGGSEN +
Sbjct: 97 VREGYSE--GYLRKSIVKDP-LNRVNTGDNTPAVVHIDIVPGDRVKITVAPKGGGSENMS 153
Query: 122 KFAMLNPSDSLV---DWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINM 178
+ ML P+D + +++ TV G+ CPP T EKA L+AKK L++++
Sbjct: 154 QLKMLKPADGVEGVKQFVIDTVRQAGSNPCPPIIVGVGIGGTFEKAALLAKKALLREVGT 213
Query: 179 NSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIP 238
+ P L EL KIN+LGIG QG+GG T L V I YPTH AS PVA+
Sbjct: 214 QN-----PDPFYNSLERELLEKINNLGIGPQGLGGRVTALAVHIETYPTHIASLPVAVNL 268
Query: 239 NCAATRHGHIIL 250
NC RH +IL
Sbjct: 269 NCHVARHETVIL 280
>TIGR_CMR|DET_0453 [details] [associations]
symbol:DET_0453 "fumarate hydratase, alpha subunit,
putative" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
Pfam:PF05681 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829
TIGRFAMs:TIGR00722 eggNOG:COG1951 HOGENOM:HOG000225707 KO:K01677
OMA:IETYPTH ProtClustDB:PRK06246 RefSeq:YP_181197.1 STRING:Q3Z9A2
GeneID:3230197 KEGG:det:DET0453 PATRIC:21607975
BioCyc:DETH243164:GJNF-453-MONOMER Uniprot:Q3Z9A2
Length = 280
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 100/248 (40%), Positives = 144/248 (58%)
Query: 6 AAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRG 65
A +D + +L N+ + ++K P+CQDTG VF + G +V NG++ D IN GVR+G
Sbjct: 43 AGRDILLSLLENACIAGEKKIPLCQDTGTAIVFAEAGQDVHI---NGNLVDAINLGVRQG 99
Query: 66 YTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAM 125
Y LR SIVS P R NTQDNTPAVI+ E+VPG+ L + +KG G+EN ++ M
Sbjct: 100 YEQA--YLRKSIVSQPFSERVNTQDNTPAVIHTEIVPGDRLKLSFMAKGSGAENMSRLFM 157
Query: 126 LNPS---DSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSII 182
L P + +++ +++TV G CPP T EKAM MAKK L++ + ++S
Sbjct: 158 LKPGVGHEGVIEAVLETVENAGGSPCPPIIIGLGVGATAEKAMFMAKKALLRPLGVSS-- 215
Query: 183 KNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAA 242
P+ ++ L E+ ++N LGIG G+GG T L V PTH AS PVA+ C +
Sbjct: 216 ---PEAEVAALEAEVLKRVNGLGIGPLGLGGRVTALGVMAEAAPTHIASLPVAVNLQCHS 272
Query: 243 TRHGHIIL 250
RHG ++L
Sbjct: 273 ARHGEVVL 280
>TIGR_CMR|CHY_0061 [details] [associations]
symbol:CHY_0061 "fumarate hydratase, alpha subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009061 "anaerobic
respiration" evidence=ISS] InterPro:IPR004646 Pfam:PF05681
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0004333
TIGRFAMs:TIGR00722 eggNOG:COG1951 HOGENOM:HOG000225707 KO:K01677
ProtClustDB:PRK06246 RefSeq:YP_358933.1 STRING:Q3AG01
GeneID:3727347 KEGG:chy:CHY_0061 PATRIC:21273319
BioCyc:CHYD246194:GJCN-61-MONOMER Uniprot:Q3AG01
Length = 281
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 107/254 (42%), Positives = 149/254 (58%)
Query: 1 MEKGIAAKDAIAQILI-NSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVIN 59
ME+ K+ I +ILI N+ + +E+ ICQDTG+ VF++IG +V G G++ D +N
Sbjct: 38 MEESPIGKE-IFEILIKNAEIAREEEMAICQDTGMAVVFMEIGQDVHIVG--GNLEDAVN 94
Query: 60 EGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSEN 119
GV +GY LR S+V +P F R NT++NTPAVI++ +VPG+ + I +A KG GSEN
Sbjct: 95 AGVAKGYLE--GYLRKSVVEEPLFNRVNTKNNTPAVIHVSIVPGDKVKIVLAPKGFGSEN 152
Query: 120 KTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDI 176
+ M PSD ++ +++ TV G+ CPP T EKA L+AKK L++ +
Sbjct: 153 MSALRMFKPSDGIEAIKKFVVDTVVNAGSNPCPPIVIGIGIGGTMEKAALLAKKALIRPL 212
Query: 177 NMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAI 236
N I+N + L EL +N+ GIG QG+GG T L V I +PTH A PVAI
Sbjct: 213 N----IRNSHP-QYAALEQELLELVNNTGIGPQGLGGRITALAVNIEWFPTHIAGLPVAI 267
Query: 237 IPNCAATRHGHIIL 250
NC ATRH I L
Sbjct: 268 NINCHATRHAEIEL 281
>TIGR_CMR|GSU_0994 [details] [associations]
symbol:GSU_0994 "fumarate hydratase, class I"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004333 "fumarate
hydratase activity" evidence=ISS] [GO:0006099 "tricarboxylic acid
cycle" evidence=ISS] InterPro:IPR004646 InterPro:IPR004647
InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683 PIRSF:PIRSF001394
GO:GO:0006091 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004333
HOGENOM:HOG000009338 KO:K01676 OMA:AIVMGKK Gene3D:3.20.130.10
SUPFAM:SSF117457 TIGRFAMs:TIGR00722 TIGRFAMs:TIGR00723
RefSeq:NP_952048.1 ProteinModelPortal:Q74EG8 DNASU:2685809
GeneID:2685809 KEGG:gsu:GSU0994 PATRIC:22024758
ProtClustDB:PRK15389 BioCyc:GSUL243231:GH27-965-MONOMER
Uniprot:Q74EG8
Length = 541
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 142/461 (30%), Positives = 212/461 (45%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
+KG+A +A L N+ + A + PICQDTG V K G V + G G + +++G
Sbjct: 85 DKGVA----LA-FLRNAEISANFELPICQDTGTATVIAKKGQQV-WTG--GKDEEYLSKG 136
Query: 62 VRRGYTNPNNILRAS-IVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENK 120
V + YT N LR S V+ + NT N PA + ++ V G+ +KGGGS NK
Sbjct: 137 VYKTYTEEN--LRYSQTVALNMYDEINTGTNLPAQVEIQAVDGDAYKFLFMAKGGGSANK 194
Query: 121 TKF-----AMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXX-TPEKAMLMAKKVLMQ 174
T A+L P + L +++ + +G CPP + ++ M K +
Sbjct: 195 TMLFQETKALLTP-EKLEKFLVDKMKYLGTAACPPYHIAVVVGGCSADQCMKTVKLASAK 253
Query: 175 DINMNSIIKNGPKNKIEELRLE--LFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASK 232
++ N ++ LE L LGIGAQ GG DV+++ P H AS
Sbjct: 254 YLDALPTQGNEHGQAFRDVELEEKLLQAAYKLGIGAQ-FGGKYFAHDVRVIRLPRHGASC 312
Query: 233 PVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYV--NLNTLTKK- 289
PV + +C+A R+ + G +F++ + I K H V +LN K+
Sbjct: 313 PVGMAVSCSADRNIKAKITRDG-LFVEELDRNPGRLIPEQYRGKHEHGVKIDLNRPMKEI 371
Query: 290 --EVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRN 347
E+S + LLLNG I+ GRD AH + + ++ G+ +P N IYY GP
Sbjct: 372 LAELSKYPVATPLLLNGTIVVGRDIAHAKFKEIIDAGKPVPEYLLNHPIYYAGPAKTPAG 431
Query: 348 EVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGG-AA 406
+ G GPTTA RMD + +L+ K + MI K RS YL ++GG AA
Sbjct: 432 KPSGSFGPTTAGRMDSYVDLLQSKGASMIMIAKGNRSQQVTDACQKYGGFYLGSIGGPAA 491
Query: 407 YLXXXXXXXXXXXCFEDLGMEAIYEFNVENMPVTVAIDSLG 447
L F +LGMEA+++ VEN P + +D G
Sbjct: 492 VLAEENIKKVECIDFPELGMEAVWKIEVENFPAFILVDDKG 532
>UNIPROTKB|P14407 [details] [associations]
symbol:fumB species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0042710 "biofilm formation" evidence=IMP] [GO:0047808
"D(-)-tartrate dehydratase activity" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004333 "fumarate hydratase activity" evidence=IEA;IDA]
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA;IGI]
InterPro:IPR004646 InterPro:IPR004647 InterPro:IPR011167
InterPro:IPR020557 Pfam:PF05681 Pfam:PF05683 PIRSF:PIRSF001394
PROSITE:PS00163 UniPathway:UPA00223 GO:GO:0005829 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0006099 GO:GO:0006974 GO:GO:0051539 EMBL:U14003
GO:GO:0042710 EMBL:M27058 GO:GO:0004333 HOGENOM:HOG000009338
KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 PIR:A65222 RefSeq:NP_418546.1 RefSeq:YP_492265.1
ProteinModelPortal:P14407 SMR:P14407 IntAct:P14407 PRIDE:P14407
EnsemblBacteria:EBESCT00000002330 EnsemblBacteria:EBESCT00000002331
EnsemblBacteria:EBESCT00000002332 EnsemblBacteria:EBESCT00000016910
GeneID:12933156 GeneID:948642 KEGG:ecj:Y75_p4009 KEGG:eco:b4122
PATRIC:32123809 EchoBASE:EB0352 EcoGene:EG10357 eggNOG:COG1951
OMA:PFPLAHD ProtClustDB:PRK15391 BioCyc:EcoCyc:FUMB-MONOMER
BioCyc:ECOL316407:JW4083-MONOMER BioCyc:MetaCyc:FUMB-MONOMER
SABIO-RK:P14407 Genevestigator:P14407 GO:GO:0047808 Uniprot:P14407
Length = 548
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 130/449 (28%), Positives = 201/449 (44%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V + G G + +++GV Y N
Sbjct: 89 QFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQRV-WTG--GGDEETLSKGVYNTYIEDNLR 145
Query: 73 LRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AMLN 127
+ D + NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 146 YSQNAALDM-YKEVNTGTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLT 204
Query: 128 PSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQ---DINMNSIIKN 184
P L +++++ + T+G CPP T + L K+ D ++
Sbjct: 205 PG-KLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNEH 263
Query: 185 GPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATR 244
G + +L EL + LG+GAQ GG D++++ P H AS PV + +C+A R
Sbjct: 264 GQAFRDVQLEQELLEEAQKLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADR 322
Query: 245 HGHIILNGSGPVFMK-PPSLSNW-PKIKFTTNNKKFHYVNLNTLTKK---EVSSWRSGEI 299
+ +N G K + + P+ + V+LN K+ ++S +
Sbjct: 323 NIKAKINREGIWIEKLEHNPGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVSTR 382
Query: 300 LLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTAS 359
L L G I+ GRD AH +++ ++ G+++P + IYY GP G GPTTA
Sbjct: 383 LSLTGTIIVGRDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAG 442
Query: 360 RMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGG-AAYLXXXXXXXXXX 418
RMD + +L+ G + M+ K RS YL ++GG AA L
Sbjct: 443 RMDSYVDLLQSHGGSMIMLAKGNRSQQVTDACHKHGGFYLGSIGGPAAVLAQQSIKHLEC 502
Query: 419 XCFEDLGMEAIYEFNVENMPVTVAIDSLG 447
+ +LGMEAI++ VE+ P + +D G
Sbjct: 503 VAYPELGMEAIWKIEVEDFPAFILVDDKG 531
>UNIPROTKB|P0AC33 [details] [associations]
symbol:fumA species:83333 "Escherichia coli K-12"
[GO:0004333 "fumarate hydratase activity" evidence=IEA;IDA;NAS]
[GO:0050163 "oxaloacetate tautomerase activity" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA;IEP;IMP] InterPro:IPR004646 InterPro:IPR004647
InterPro:IPR011167 InterPro:IPR020557 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 PROSITE:PS00163 UniPathway:UPA00223 GO:GO:0005829
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006099 GO:GO:0051539
GO:GO:0004333 EMBL:X00522 PIR:A03531 RefSeq:NP_416129.1
RefSeq:YP_489875.1 ProteinModelPortal:P0AC33 SMR:P0AC33
DIP:DIP-36200N IntAct:P0AC33 MINT:MINT-1310290 PaxDb:P0AC33
PRIDE:P0AC33 EnsemblBacteria:EBESCT00000003292
EnsemblBacteria:EBESCT00000014684 GeneID:12934128 GeneID:946826
KEGG:ecj:Y75_p1588 KEGG:eco:b1612 PATRIC:32118526 EchoBASE:EB0351
EcoGene:EG10356 eggNOG:COG1838 HOGENOM:HOG000009338 KO:K01676
OMA:AIVMGKK ProtClustDB:PRK15390 BioCyc:EcoCyc:FUMA-MONOMER
BioCyc:ECOL316407:JW1604-MONOMER BioCyc:MetaCyc:FUMA-MONOMER
SABIO-RK:P0AC33 Genevestigator:P0AC33 GO:GO:0050163
Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 Uniprot:P0AC33
Length = 548
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 134/450 (29%), Positives = 201/450 (44%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V + G G + GV Y N
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRV-WTG--GGDEAALARGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQ---DINMNSIIK 183
P L +++++ + T+G CPP T + L K+ D +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + EL EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RHGHIILNGSGPVFMK-PPSLSNW-PKIKFTTNNKKFHYVNLNTLTKK---EVSSWRSGE 298
R+ +N G K + + P+ + V+LN K+ ++S +
Sbjct: 322 RNIKAKINRQGIWIEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVST 381
Query: 299 ILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTA 358
L LNG I+ GRD AH +++ + GE +P + IYY GP G GPTTA
Sbjct: 382 RLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTA 441
Query: 359 SRMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGG-AAYLXXXXXXXXX 417
RMD + + + + G + M+ K RS YL ++GG AA L
Sbjct: 442 GRMDSYVDQLQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLE 501
Query: 418 XXCFEDLGMEAIYEFNVENMPVTVAIDSLG 447
+ +LGMEAI++ VE+ P + +D G
Sbjct: 502 CVEYPELGMEAIWKIEVEDFPAFILVDDKG 531
>TIGR_CMR|CHY_0062 [details] [associations]
symbol:CHY_0062 "fumarate hydratase, beta subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009061 "anaerobic
respiration" evidence=ISS] InterPro:IPR004647 Pfam:PF05683
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016836
eggNOG:COG1838 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00723 HOGENOM:HOG000225718 KO:K01678
RefSeq:YP_358934.1 ProteinModelPortal:Q3AG00 STRING:Q3AG00
GeneID:3726393 KEGG:chy:CHY_0062 PATRIC:21273321 OMA:MIGKGYR
ProtClustDB:PRK06842 BioCyc:CHYD246194:GJCN-62-MONOMER
Uniprot:Q3AG00
Length = 184
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 76/175 (43%), Positives = 104/175 (59%)
Query: 286 LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPV 345
LT+++V S ++G+ +L+ G + TGRDAAH R+ L +GE++P + ++VIYYVGP
Sbjct: 11 LTEEKVRSLKAGDSVLITGVVYTGRDAAHKRMVEALDRGEELPTDLKDQVIYYVGPTPAK 70
Query: 346 RNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGGA 405
+ IG AGPTT+ RMD +T +LEK GL MIGK RS Y VA+GGA
Sbjct: 71 PGKPIGSAGPTTSGRMDAYTPRLLEK-GLRGMIGKGYRSPEVIEAIKKYGAVYFVAIGGA 129
Query: 406 AYLXXXXXXXXXXXCFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKK 460
A L +EDLG EA + VE+ P VAID G +I+ GPKK+K+
Sbjct: 130 AALIAKSIKSYEVIAYEDLGPEAHAKIYVEDFPAIVAIDCEGNNIYEIGPKKYKR 184
>TIGR_CMR|BA_0423 [details] [associations]
symbol:BA_0423 "fumarate hydratase, class I" species:198094
"Bacillus anthracis str. Ames" [GO:0004333 "fumarate hydratase
activity" evidence=ISS] [GO:0006099 "tricarboxylic acid cycle"
evidence=ISS] InterPro:IPR004646 InterPro:IPR004647
InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683 PIRSF:PIRSF001394
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006091
GO:GO:0004333 KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00722 TIGRFAMs:TIGR00723 RefSeq:NP_842966.1
RefSeq:YP_017048.1 RefSeq:YP_026690.1 ProteinModelPortal:Q81Z50
DNASU:1087739 EnsemblBacteria:EBBACT00000010911
EnsemblBacteria:EBBACT00000014345 EnsemblBacteria:EBBACT00000023609
GeneID:1087739 GeneID:2817640 GeneID:2847870 KEGG:ban:BA_0423
KEGG:bar:GBAA_0423 KEGG:bat:BAS0410 HOGENOM:HOG000262370
OMA:IEGEVTM ProtClustDB:CLSK872861
BioCyc:BANT260799:GJAJ-452-MONOMER
BioCyc:BANT261594:GJ7F-461-MONOMER Uniprot:Q81Z50
Length = 506
Score = 345 (126.5 bits), Expect = 2.3e-31, P = 2.3e-31
Identities = 130/476 (27%), Positives = 210/476 (44%)
Query: 4 GIAAKDAIAQILINSRMCAKEKRPICQDTGI--VNVFLKIGMNVRFKGFNGSIHDVINEG 61
G + A+ I N +M PICQDTG+ ++ +G+N + K +I+ +
Sbjct: 37 GTRSAMALGTITNNIKMADDNISPICQDTGMPTFKIYTPVGVN-QLK-LKEAIYHALERA 94
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
+ G PN++ S+ D N TP VI E +++D ++ KGGG ENK
Sbjct: 95 TKDGKLRPNSV--DSLFGDNS--GNNLGPGTP-VIKFEQWEKDYIDARLILKGGGCENKN 149
Query: 122 -KFAMLNPSDSL------VDWIMKTV-----PTMGAGWCPPXXXXXXXXXTPEKAMLMAK 169
++++ + L ++ I K + G G C +AK
Sbjct: 150 IQYSLPCELEGLGRAGRDLEGIRKCLLHAVYQAQGQG-CSAGVIGVGIGGDRTSGYELAK 208
Query: 170 KVLMQDIN-MNSIIKNGPK-NKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPT 227
L + ++ +N I P+ ++EE LE NK LGIG G GG +T+L KI +Y
Sbjct: 209 NQLFRTLDDVNPI----PELQQLEEYVLENANK---LGIGTMGFGGETTLLGCKIGVYNR 261
Query: 228 HAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNK-KFHYVNLNT- 285
AS V++ NC A R + ++ M ++ K + + L
Sbjct: 262 LPASFYVSVAYNCWAYRRLGVTIHPETGEIMDWLYQEGDDTLQQEAQEKTEQREIVLQAP 321
Query: 286 LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPV 345
+T++++ R G+++ +NG + TGRDA H + PV+ N +VIY+ GP+ V
Sbjct: 322 ITEEQIRKLRVGDVVTINGMMYTGRDAIHKHLM-----DNDCPVDLNGQVIYHCGPV-VV 375
Query: 346 RNE----VIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVA 401
++E I AGPTT+ R + + I++K G+ A+IGK YL A
Sbjct: 376 KDENDNWQIKAAGPTTSIREEPYQGDIMKKFGIRAVIGKGGMGAKTLAALEEHGGVYLNA 435
Query: 402 VGGAAYLXXXXXXXXXXXCFEDLGM-EAIYEFNVENMPVTVAIDSLGKSIHIDGPK 456
+GGAA F G+ EA++ +E V +DS G S+H D K
Sbjct: 436 IGGAAQYYAECIKEVKDVDFLQFGIPEAMWHLRIEGFKAVVTMDSHGNSLHADVDK 491
>TIGR_CMR|CHY_1374 [details] [associations]
symbol:CHY_1374 "fumarate hydratase, beta subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004647
Pfam:PF05683 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016836
eggNOG:COG1838 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00723 HOGENOM:HOG000225718 RefSeq:YP_360206.1
ProteinModelPortal:Q3ACC8 STRING:Q3ACC8 GeneID:3727773
KEGG:chy:CHY_1374 PATRIC:21275881 KO:K01678 OMA:FIMELNI
BioCyc:CHYD246194:GJCN-1373-MONOMER Uniprot:Q3ACC8
Length = 182
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 69/181 (38%), Positives = 102/181 (56%)
Query: 281 VNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339
+ + T L+++ + + G+ +L+NG I T RDAAH ++ +L KGE++PVN ++IYYV
Sbjct: 2 IKITTPLSEEVIEKLQIGDEVLINGVIFTARDAAHKKLYELLEKGEELPVNLKGQIIYYV 61
Query: 340 GPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYL 399
GP VIG AGPTT+ RMD +T +L+ GL MIGK R+ Y
Sbjct: 62 GPTPAKPGRVIGSAGPTTSGRMDKYTPRLLD-YGLKGMIGKGLRNKEVQDAIVRNKAIYF 120
Query: 400 VAVGGAAYLXXXXXXXXXXXCFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWK 459
A+GGA L + DLG EAIY V + P V ID+ G++++ GP+K++
Sbjct: 121 AAIGGAGALLSKTIVKSEVVAYPDLGPEAIYRLEVVDFPAIVVIDARGQNLYEVGPEKFR 180
Query: 460 K 460
K
Sbjct: 181 K 181
>TIGR_CMR|DET_0454 [details] [associations]
symbol:DET_0454 "fumarate hydratase, beta subunit,
putative" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004647
Pfam:PF05683 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016836
eggNOG:COG1838 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00723 HOGENOM:HOG000225718 KO:K01678 OMA:MIGKGYR
RefSeq:YP_181198.1 ProteinModelPortal:Q3Z9A1 STRING:Q3Z9A1
GeneID:3230196 KEGG:det:DET0454 PATRIC:21607977
ProtClustDB:CLSK837459 BioCyc:DETH243164:GJNF-454-MONOMER
Uniprot:Q3Z9A1
Length = 188
Score = 291 (107.5 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 63/171 (36%), Positives = 96/171 (56%)
Query: 281 VNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339
+ LN+ E+ ++G+ +L++G I RDAAH R+ L++G+ +P + + +YY+
Sbjct: 5 IKLNSPFNPAELEKLQAGDRVLISGVIYAARDAAHKRLVEALNQGKPLPFDLKGQTVYYM 64
Query: 340 GPINPVR-NEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAY 398
GP +P + EVIG AGPTT+SRMD +T +L+ GL+A+IGK RS Y
Sbjct: 65 GP-SPAKPGEVIGSAGPTTSSRMDRYTPELLDA-GLLAIIGKGNRSAEVSRAIVGKKAVY 122
Query: 399 LVAVGGAAYLXXXXXXXXXXXCFEDLGMEAIYEFNVENMPVTVAIDSLGKS 449
+++GGA L + +LG EAI VE+ P VAIDS G +
Sbjct: 123 FISIGGAGALLSQRIKESRMVAYPELGAEAILALKVEDFPAIVAIDSQGNN 173
>UNIPROTKB|P05847 [details] [associations]
symbol:ttdA "L-tartrate dehydratase, alpha subunit"
species:83333 "Escherichia coli K-12" [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0008730 "L(+)-tartrate dehydratase activity" evidence=IEA]
[GO:0042710 "biofilm formation" evidence=IMP] InterPro:IPR004646
Pfam:PF05681 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 EMBL:U28379
GO:GO:0042710 TIGRFAMs:TIGR00722 eggNOG:COG1951 EMBL:M16194
EMBL:L14781 PIR:C65094 RefSeq:NP_417533.1 RefSeq:YP_491253.1
ProteinModelPortal:P05847 IntAct:P05847 PRIDE:P05847
EnsemblBacteria:EBESCT00000001624 EnsemblBacteria:EBESCT00000018261
GeneID:12934302 GeneID:947565 KEGG:ecj:Y75_p2987 KEGG:eco:b3061
PATRIC:32121536 EchoBASE:EB1156 EcoGene:EG11168
HOGENOM:HOG000225707 KO:K03779 OMA:VNACPPL ProtClustDB:PRK08230
BioCyc:EcoCyc:TTDA-MONOMER BioCyc:ECOL316407:JW3033-MONOMER
BioCyc:MetaCyc:TTDA-MONOMER Genevestigator:P05847 GO:GO:0008730
Uniprot:P05847
Length = 303
Score = 225 (84.3 bits), Expect = 4.3e-18, P = 4.3e-18
Identities = 64/230 (27%), Positives = 106/230 (46%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVPGNF-LDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V +++P N +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRH-----PNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILN 251
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G ++++
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVH 288
>UNIPROTKB|P0AC35 [details] [associations]
symbol:ttdB "L-tartrate dehydratase, beta subunit"
species:83333 "Escherichia coli K-12" [GO:0016836 "hydro-lyase
activity" evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0008730 "L(+)-tartrate dehydratase activity" evidence=IEA]
InterPro:IPR004647 Pfam:PF05683 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U28379
eggNOG:COG1838 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00723 EMBL:M16194 EMBL:L14781 GO:GO:0008730 PIR:D65094
RefSeq:NP_417534.1 RefSeq:YP_491254.1 ProteinModelPortal:P0AC35
SMR:P0AC35 IntAct:P0AC35 EnsemblBacteria:EBESCT00000002860
EnsemblBacteria:EBESCT00000018000 GeneID:12932205 GeneID:947568
KEGG:ecj:Y75_p2988 KEGG:eco:b3062 PATRIC:32121538 EchoBASE:EB1157
EcoGene:EG11169 HOGENOM:HOG000225718 KO:K03780 OMA:VIYHAGP
ProtClustDB:PRK08228 BioCyc:EcoCyc:TTDB-MONOMER
BioCyc:ECOL316407:JW3034-MONOMER BioCyc:MetaCyc:TTDB-MONOMER
Genevestigator:P0AC35 Uniprot:P0AC35
Length = 201
Score = 164 (62.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 47/180 (26%), Positives = 84/180 (46%)
Query: 283 LNTLTKKE-VSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGP 341
L T K E + R G+++ L G ++T RD H R+ + IP + N + I++ GP
Sbjct: 5 LTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRL---IELKRPIPYDLNGKAIFHAGP 61
Query: 342 I---NPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAY 398
I N + E++ GPTT+ RM+ F +E+ G+ ++GK +
Sbjct: 62 IVRKNGDKWEMVS-VGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALH 120
Query: 399 LVAVGGAAYLXXXXXXXXXXXCFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSIHIDGPK 456
++ G A L + +LGM E+++ V+ P+ V+ID+ G ++ + K
Sbjct: 121 VIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNLIAENKK 180
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 470 439 0.00089 118 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 619 (66 KB)
Total size of DFA: 263 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.75u 0.12s 33.87t Elapsed: 00:00:02
Total cpu time: 33.75u 0.12s 33.87t Elapsed: 00:00:02
Start: Thu Aug 15 11:08:07 2013 End: Thu Aug 15 11:08:09 2013