RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3766
         (470 letters)



>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 178

 Score =  189 bits (483), Expect = 5e-59
 Identities = 64/175 (36%), Positives = 106/175 (60%), Gaps = 5/175 (2%)

Query: 281 VNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339
             L T L K ++   + G+++ + G+I T RD AH R    + +G+++P +F+  V+Y+ 
Sbjct: 4   YELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHC 63

Query: 340 GPINPVRNEV-IGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAY 398
           GP+    +E  +  AGPTT++RM+ FT  ILEK+  + +IGK   S+++++ ++  K AY
Sbjct: 64  GPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRG-KAAY 122

Query: 399 LVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSIH 451
               GGA  L + +IK  K + +EDLGM EA++   VE   P  VAID+ G S++
Sbjct: 123 FAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCIVAIDAHGNSLY 177


>d1w2za2 d.17.2.1 (A:6-98) Copper amine oxidase, domains 1 and 2
           {Pea seedling (Pisum sativum) [TaxId: 3888]}
          Length = 93

 Score = 27.1 bits (60), Expect = 1.6
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 270 KFTTNNKKFHYVNLNTLTKKEVSSWRSGE 298
             + N   FHY+ L+   K  V  + +  
Sbjct: 25  PISNNRLAFHYIGLDDPEKDHVLRYETHP 53


>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc
           punctiforme pcc 73102 [TaxId: 63737]}
          Length = 143

 Score = 26.6 bits (58), Expect = 3.7
 Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 380 KAERSDKIIKLIKKQKIAYLVAVGGAAYLIS------KAIKSAKIICFEDLGMEAIYEFN 433
           + +   K+ +LIK         V     L S        I S   + F            
Sbjct: 3   RTQEIQKLHELIKNIDYGMFTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEI 62

Query: 434 VENMPVTVAI--DSLGKSIHIDG 454
             +  V V+       + + I G
Sbjct: 63  EHHEQVNVSFSSPEQQRYVSISG 85


>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 134

 Score = 26.5 bits (57), Expect = 4.9
 Identities = 8/37 (21%), Positives = 12/37 (32%)

Query: 419 ICFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGP 455
               D        +NV   P  V   + G S  ++ P
Sbjct: 82  TNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNP 118


>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 335

 Score = 27.1 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 416 AKIICFEDLGMEAIYEFNVENMPVTVA 442
           A II   +LGME ++E N  N P+ +A
Sbjct: 309 ADIINRANLGMEVMHERNAHNFPLDLA 335


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,789,803
Number of extensions: 88256
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 8
Length of query: 470
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 381
Effective length of database: 1,185,626
Effective search space: 451723506
Effective search space used: 451723506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)