BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3767
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6SVI6|TRMD_JANMA tRNA (guanine-N(1)-)-methyltransferase OS=Janthinobacterium sp.
(strain Marseille) GN=trmD PE=3 SV=1
Length = 249
Score = 329 bits (843), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 140/248 (56%), Positives = 197/248 (79%), Gaps = 5/248 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFDV+TLFPEMF+AITQSGITRRAFE+K+ +L+LWNPR+F+S+ +R +DD PYGGG GM
Sbjct: 1 MQFDVVTLFPEMFTAITQSGITRRAFEQKKCALSLWNPRDFTSDKHRTVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+M+ KP+E + A K + P+++Y+SPQGK LTH +++L E L+LLCGRY+
Sbjct: 61 VMMVKPLEAAVQAAKARQTEQGLAAPRVVYLSPQGKALTHERVMQLTTEPGLVLLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
A+DQRFLD+ +DEEIS+GDF+LSGGE+PAM L+DA++R LP VL++ + ++DSF+NGLL
Sbjct: 121 AVDQRFLDSCVDEEISLGDFVLSGGEIPAMALMDAVIRQLPGVLHDDASAVEDSFVNGLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P +Y VP VL+ G+H +I+KW+R+ +L+ T +KRPDLI+KAR+ LT +
Sbjct: 181 DCPHYTRPEVYEGAAVPAVLMGGHHVEIEKWRRERALEATARKRPDLIVKAREAGLLTRS 240
Query: 236 DEEFLKKI 243
DE+FL +
Sbjct: 241 DEKFLSSM 248
>sp|A4G2T7|TRMD_HERAR tRNA (guanine-N(1)-)-methyltransferase OS=Herminiimonas
arsenicoxydans GN=trmD PE=3 SV=1
Length = 248
Score = 324 bits (831), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 143/248 (57%), Positives = 194/248 (78%), Gaps = 5/248 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFDV+TLFPEMF+AITQSGITRRAFE+K+ L LWNPR+F+S+ +R +DD PYGGG GM
Sbjct: 1 MQFDVVTLFPEMFTAITQSGITRRAFEQKKCELALWNPRDFTSDRHRTVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTI-TAIKKNIKK---IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+M+ KP+E + A K+ I P++IY+SPQGK LTH +++L E L+LLCGRY+
Sbjct: 61 VMMVKPLEAAVLEAKKRQIATDLPTPRVIYLSPQGKALTHERVMQLTAEPGLVLLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
A+DQRFLD +DEEIS+GDF+LSGGELPAM L+DA++R LP VL++ + ++DSF+NGLL
Sbjct: 121 AVDQRFLDVCVDEEISLGDFVLSGGELPAMALMDAVIRQLPGVLHDDASAVEDSFVNGLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P +Y + VP VL+ G+H +I+KW+R+ +L+ T KKRPD+I+KAR LT
Sbjct: 181 DCPHYTRPEVYEGVAVPAVLMGGHHVEIEKWRRERALEATAKKRPDMIVKARAAGLLTRA 240
Query: 236 DEEFLKKI 243
DE+FL +
Sbjct: 241 DEKFLSSL 248
>sp|Q13VF0|TRMD_BURXL tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia xenovorans
(strain LB400) GN=trmD PE=3 SV=1
Length = 255
Score = 300 bits (768), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 187/251 (74%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFDV+TLFP+MF A+T GIT RA ++++YSL WNPR+F+++NYR IDD PYGGG GM
Sbjct: 1 MQFDVVTLFPDMFRALTDWGITSRAAKQERYSLRTWNPRDFTTDNYRTIDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML +P+ED I A K + P+++ MSPQG L H+ +++ E LILLCGRY+
Sbjct: 61 VMLARPLEDAIGAAKAAQAEQGIGAPRVVMMSPQGVTLNHDRVMRFAAEPGLILLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR LD +DEE+S+GDF+LSGGELPAM L+DA+VR LP VLN+ + +QDSF++ LL
Sbjct: 121 AIDQRLLDRVVDEEVSLGDFVLSGGELPAMALMDAVVRQLPGVLNDSQSAVQDSFVDVLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I+ W+R+ +L+ T KRPDLI+KARKNK L+
Sbjct: 181 DCPHYTRPEEYNGVRVPDVLLGGHHAEIETWRRREALRNTLNKRPDLIVKARKNKMLSRA 240
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 241 DEAWLASLAKE 251
>sp|B2T605|TRMD_BURPP tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia phytofirmans
(strain DSM 17436 / PsJN) GN=trmD PE=3 SV=1
Length = 255
Score = 300 bits (767), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 137/251 (54%), Positives = 187/251 (74%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFDV+TLFP+MF A+T GIT RA ++++Y+L WNPR+F+++NYR IDD PYGGG GM
Sbjct: 1 MQFDVVTLFPDMFRALTDWGITSRAAKQERYALRTWNPRDFTTDNYRTIDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+ED I A K + +++ MSPQG L H+ +++ E LILLCGRY+
Sbjct: 61 VMLAKPLEDAIGAAKAAQAEQGIGASRVVMMSPQGATLNHDRVMQFAAEPGLILLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR LD +DEE+S+GDF+LSGGELPAM L+DA+VR LP VLN+ + +QDSF++ LL
Sbjct: 121 AIDQRLLDRVVDEEVSLGDFVLSGGELPAMALMDAVVRQLPGVLNDSQSAVQDSFVDVLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I+ W+R+ +L+ T KKRPDLI+KAR+NK L+
Sbjct: 181 DCPHYTRPEEYDGVRVPDVLLGGHHAEIEAWRRREALRNTLKKRPDLIVKARRNKMLSRA 240
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 241 DEAWLASLAKE 251
>sp|Q1LQE0|TRMD_RALME tRNA (guanine-N(1)-)-methyltransferase OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=trmD PE=3 SV=1
Length = 260
Score = 299 bits (766), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 139/251 (55%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFDVITLFPEMF A+T GIT RA ++++Y+L WNPR+F+ +NYR IDD PYGGG GM
Sbjct: 1 MQFDVITLFPEMFRALTDWGITSRAAKQQRYALRTWNPRDFTVDNYRTIDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKI----PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+ED I A P ++ MSPQG LTH ++ L + L+LLCGRY+
Sbjct: 61 VMLAKPLEDAIDAAAAAQSDAGVGRPHVVLMSPQGATLTHEKVMALSQRPGLVLLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEEIS+GDF+LSGGELPAM LIDA+VR LP VL + + +QDSF+NGLL
Sbjct: 121 AIDQRLIDRRVDEEISLGDFVLSGGELPAMALIDAVVRHLPGVLGDAQSAVQDSFVNGLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I+KW+R+ +L T +KRPDLI+ AR+ L+
Sbjct: 181 DCPHYTRPEEYEGVRVPDVLLGGHHAEIEKWRRRQALANTARKRPDLIVAAREQGLLSKA 240
Query: 236 DEEFLKKINKK 246
DE+FL ++ K
Sbjct: 241 DEKFLSELAAK 251
>sp|B1YV59|TRMD_BURA4 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia ambifaria
(strain MC40-6) GN=trmD PE=3 SV=1
Length = 264
Score = 298 bits (763), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 132/251 (52%), Positives = 188/251 (74%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA +++++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 VQFDVVTLFPEMFRALTDWGITSRAVKQERFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKKI----PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K ++ +++ MSPQG TH +++ +E +I+LCGRY+
Sbjct: 69 VMLAKPLEAAINAAKAAQAELGVASTRVVMMSPQGAPFTHERAVRMAQEPGVIVLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR LD +DEEIS+GDF+LSGGELPAM ++DA+VRLLP VLN+ + +QDSF++GLL
Sbjct: 129 AIDQRLLDRCVDEEISLGDFVLSGGELPAMAMMDAVVRLLPGVLNDAQSAVQDSFVDGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y M VP VLL G+H +I++W+R+ +LK T +KRPDLI++AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGMRVPDVLLGGHHAEIERWRRQEALKNTLRKRPDLIVRARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + ++
Sbjct: 249 DEAWLANLARE 259
>sp|B2JF31|TRMD_BURP8 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia phymatum
(strain DSM 17167 / STM815) GN=trmD PE=1 SV=1
Length = 255
Score = 298 bits (762), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 135/250 (54%), Positives = 186/250 (74%), Gaps = 5/250 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFD++TLFP+MF A+T GIT RA ++++Y L WNPR+F+++NYR IDD PYGGG GM
Sbjct: 1 MQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKI----PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML +P+ED I A K + +++ MSPQG L H+ +++ E LILLCGRY+
Sbjct: 61 VMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM LIDA+VR LP VLN+ + +QDSF++GLL
Sbjct: 121 AIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSFVDGLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI++ARKNK L+
Sbjct: 181 DCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRA 240
Query: 236 DEEFLKKINK 245
DE +L + K
Sbjct: 241 DEAWLASLAK 250
>sp|A4JCJ9|TRMD_BURVG tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=trmD PE=3 SV=1
Length = 264
Score = 297 bits (760), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 132/252 (52%), Positives = 188/252 (74%), Gaps = 7/252 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA +++++ L WNPR+F+++NYR IDD PYGGG GM
Sbjct: 9 VQFDVVTLFPEMFRALTDWGITSRAVKQERFGLRTWNPRDFTTDNYRTIDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAI-----KKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+ML KP+E I A ++ I +++ MSPQG TH +++ +E +++LCGRY
Sbjct: 69 VMLAKPLEAAIGAAKAAQAEQGIAST-RVVMMSPQGAPFTHERAVRMAQEPGVVVLCGRY 127
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGL 174
+AIDQR LD +DEEIS+GDF+LSGGELPAM ++DA+VRLLP VLN+ + +QDSF++GL
Sbjct: 128 EAIDQRLLDRCVDEEISLGDFVLSGGELPAMAMMDAVVRLLPGVLNDAQSAVQDSFVDGL 187
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LDC +YT+P Y M VP VLL G+H +I+KW+R+ +L+ T +KRPDLI++AR+ K L+
Sbjct: 188 LDCPHYTRPEEYEGMRVPDVLLGGHHAEIEKWRRQEALRNTLRKRPDLIVRARREKLLSR 247
Query: 235 TDEEFLKKINKK 246
DE +L + ++
Sbjct: 248 ADEAWLANLARE 259
>sp|Q0BH67|TRMD_BURCM tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=trmD PE=3 SV=1
Length = 264
Score = 296 bits (759), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 132/251 (52%), Positives = 187/251 (74%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA +++++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 VQFDVVTLFPEMFRALTDWGITSRAVKQERFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K + +++ MSPQG TH +++ +E +I+LCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAEQGVASTRVVMMSPQGAPFTHERAVRMAQEPGVIVLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR LD +DEEIS+GDF+LSGGELPAM ++DA+VRLLP VLN+ + +QDSF++GLL
Sbjct: 129 AIDQRLLDRCVDEEISLGDFVLSGGELPAMAMMDAVVRLLPGVLNDAQSAVQDSFVDGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y M VP VLL G+H +I++W+R+ +LK T +KRPDLI++AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGMRVPDVLLGGHHAEIERWRRQEALKNTLRKRPDLIVRARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + ++
Sbjct: 249 DEAWLANLARE 259
>sp|A9ADS9|TRMD_BURM1 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=trmD PE=3 SV=1
Length = 264
Score = 296 bits (759), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 130/252 (51%), Positives = 188/252 (74%), Gaps = 7/252 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 VQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAI-----KKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+ML +P+E I A ++ I +++ MSPQG LTH + ++ +E +++LCGRY
Sbjct: 69 VMLARPLEAAIGAAKAAQAEQGIAST-RVVMMSPQGAPLTHERVTRMAQEPGVVVLCGRY 127
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGL 174
+AIDQR LD +DEEIS+GDF+LSGGELPAM ++DA+VRLLP VLN+ + +QDSF++GL
Sbjct: 128 EAIDQRLLDRCVDEEISLGDFVLSGGELPAMAMMDAVVRLLPGVLNDAQSAVQDSFVDGL 187
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LDC +YT+P Y M VP VLL G+H +I++W+R+ +L+ T +KRPDLI++AR+ K L+
Sbjct: 188 LDCPHYTRPEEYEGMRVPDVLLGGHHAEIERWRRQEALRNTWRKRPDLIVRARREKLLSR 247
Query: 235 TDEEFLKKINKK 246
DE +L + ++
Sbjct: 248 ADEAWLANLARE 259
>sp|B4EAN4|TRMD_BURCJ tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=trmD PE=3 SV=1
Length = 264
Score = 296 bits (758), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 132/252 (52%), Positives = 189/252 (75%), Gaps = 7/252 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDVITLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 VQFDVITLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAI-----KKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+ML +P+E I A ++ I +++ MSPQG LTH+ +++ +E +++LCGRY
Sbjct: 69 VMLARPLEAAIDAAKAAQAEQGIAST-RVVMMSPQGAPLTHDRAVRMAQEPGVVVLCGRY 127
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGL 174
+AIDQR LD +DEEIS+GDF+LSGGELPAM ++DA+VRLLP VLN+ L+ +QDSF +GL
Sbjct: 128 EAIDQRLLDRCVDEEISLGDFVLSGGELPAMAMMDAVVRLLPGVLNDSLSAVQDSFADGL 187
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LDC +YT+P Y + VP VLL G+H +I+KW+R+ +L+ T +KRPDLI++AR+ K L+
Sbjct: 188 LDCPHYTRPEEYDGVRVPDVLLGGHHAEIEKWRRQEALRNTLRKRPDLIVRARREKLLSR 247
Query: 235 TDEEFLKKINKK 246
DE +L + ++
Sbjct: 248 ADEAWLANLARE 259
>sp|A0K5P7|TRMD_BURCH tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia cenocepacia
(strain HI2424) GN=trmD PE=3 SV=1
Length = 264
Score = 296 bits (758), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 131/252 (51%), Positives = 189/252 (75%), Gaps = 7/252 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 VQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAI-----KKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+ML +P+E I A ++ I +++ MSPQG LTH+ +++ +E +++LCGRY
Sbjct: 69 VMLARPLEAAIDAAKAAQAEQGIAST-RVVMMSPQGAPLTHDRAVRMAQEPGVVVLCGRY 127
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGL 174
+AIDQR LD +DEEIS+GDF+LSGGELPAM ++DA+VRLLP VLN+ L+ +QDSF +GL
Sbjct: 128 EAIDQRLLDRCVDEEISLGDFVLSGGELPAMAMMDAVVRLLPGVLNDSLSAVQDSFADGL 187
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LDC +YT+P Y + VP VLL G+H +I+KW+R+ +L+ T +KRPDLI++AR+ K L+
Sbjct: 188 LDCPHYTRPEEYDGVRVPDVLLGGHHAEIEKWRRQEALRNTLRKRPDLIVRARREKLLSR 247
Query: 235 TDEEFLKKINKK 246
DE +L + ++
Sbjct: 248 ADEAWLANLARE 259
>sp|B1JXU5|TRMD_BURCC tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia cenocepacia
(strain MC0-3) GN=trmD PE=3 SV=1
Length = 264
Score = 296 bits (758), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 131/252 (51%), Positives = 189/252 (75%), Gaps = 7/252 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 VQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAI-----KKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+ML +P+E I A ++ I +++ MSPQG LTH+ +++ +E +++LCGRY
Sbjct: 69 VMLARPLEAAIDAAKAAQAEQGIAST-RVVMMSPQGAPLTHDRAVRMAQEPGVVVLCGRY 127
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGL 174
+AIDQR LD +DEEIS+GDF+LSGGELPAM ++DA+VRLLP VLN+ L+ +QDSF +GL
Sbjct: 128 EAIDQRLLDRCVDEEISLGDFVLSGGELPAMAMMDAVVRLLPGVLNDSLSAVQDSFADGL 187
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LDC +YT+P Y + VP VLL G+H +I+KW+R+ +L+ T +KRPDLI++AR+ K L+
Sbjct: 188 LDCPHYTRPEEYDGVRVPDVLLGGHHAEIEKWRRQEALRNTLRKRPDLIVRARREKLLSR 247
Query: 235 TDEEFLKKINKK 246
DE +L + ++
Sbjct: 248 ADEAWLANLARE 259
>sp|Q1BY02|TRMD_BURCA tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia cenocepacia
(strain AU 1054) GN=trmD PE=3 SV=1
Length = 264
Score = 296 bits (758), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 131/252 (51%), Positives = 189/252 (75%), Gaps = 7/252 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 VQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAI-----KKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+ML +P+E I A ++ I +++ MSPQG LTH+ +++ +E +++LCGRY
Sbjct: 69 VMLARPLEAAIDAAKAAQAEQGIAST-RVVMMSPQGAPLTHDRAVRMAQEPGVVVLCGRY 127
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGL 174
+AIDQR LD +DEEIS+GDF+LSGGELPAM ++DA+VRLLP VLN+ L+ +QDSF +GL
Sbjct: 128 EAIDQRLLDRCVDEEISLGDFVLSGGELPAMAMMDAVVRLLPGVLNDSLSAVQDSFADGL 187
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LDC +YT+P Y + VP VLL G+H +I+KW+R+ +L+ T +KRPDLI++AR+ K L+
Sbjct: 188 LDCPHYTRPEEYDGVRVPDVLLGGHHAEIEKWRRQEALRNTLRKRPDLIVRARREKLLSR 247
Query: 235 TDEEFLKKINKK 246
DE +L + ++
Sbjct: 248 ADEAWLANLARE 259
>sp|B3R398|TRMD_CUPTR tRNA (guanine-N(1)-)-methyltransferase OS=Cupriavidus taiwanensis
(strain R1 / LMG 19424) GN=trmD PE=3 SV=1
Length = 260
Score = 294 bits (753), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 139/251 (55%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFDVITLFPEMF A+T GIT RA ++++Y+L WNPR+F+ +NYR IDD PYGGG GM
Sbjct: 1 MQFDVITLFPEMFRALTDWGITSRAAKQQRYALRSWNPRDFTVDNYRTIDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKI----PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP++D I A + P ++ MSPQGK LTH +++L + L+LLCGRY+
Sbjct: 61 VMLAKPLDDAIDAAVAAQAQAGVAKPHVVLMSPQGKTLTHAKVMELARRPGLVLLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEEIS+GDF+LSGGELPAM LIDA+VR LP VL + + +QDSF+NGLL
Sbjct: 121 AIDQRLIDRRVDEEISLGDFVLSGGELPAMALIDAVVRHLPGVLGDAQSAVQDSFVNGLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP +LL G+H +I+KW+R+ +L T KRPDLI AR+ LT
Sbjct: 181 DCPHYTRPEEYEGVRVPDILLGGHHAEIEKWRRQQALANTASKRPDLIEAAREQGLLTRA 240
Query: 236 DEEFLKKINKK 246
DE+FL + K
Sbjct: 241 DEKFLSEWAAK 251
>sp|Q39ID4|TRMD_BURS3 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia sp. (strain
383) GN=trmD PE=3 SV=1
Length = 264
Score = 294 bits (753), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 129/252 (51%), Positives = 189/252 (75%), Gaps = 7/252 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV++LFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 VQFDVVSLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAI-----KKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+ML +P+E I A ++ I +++ MSPQG LTH+ +++ +E +++LCGRY
Sbjct: 69 VMLARPLEAAIDAAKAAQAEQGIAST-RVVMMSPQGAPLTHDRAVRMAQEPGVVVLCGRY 127
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGL 174
+AIDQR LD +DEEIS+GDF+LSGGELPAM ++DA+VRLLP VLN+ L+ +QDSF +GL
Sbjct: 128 EAIDQRLLDRCVDEEISLGDFVLSGGELPAMAMMDAVVRLLPGVLNDSLSAVQDSFADGL 187
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LDC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T +KRPDLI++AR+ K L+
Sbjct: 188 LDCPHYTRPEEYDGVRVPDVLLGGHHAEIERWRRQEALRNTLRKRPDLIVRARREKLLSR 247
Query: 235 TDEEFLKKINKK 246
DE +L + ++
Sbjct: 248 ADEAWLANLARE 259
>sp|Q2SXZ9|TRMD_BURTA tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=trmD PE=3 SV=1
Length = 264
Score = 294 bits (752), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 132/251 (52%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+S+NYR +DD PYGGG GM
Sbjct: 9 IQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTSDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K +++ MSPQG LTH + ++ E ++LLCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAAQGVATSRVVMMSPQGAPLTHERVARMAAEPGVVLLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM L+DA+VRLLP VLN+ + +QDSF +GLL
Sbjct: 129 AIDQRLIDRCVDEELSLGDFVLSGGELPAMALMDAVVRLLPGVLNDAQSAVQDSFADGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI +AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGVRVPDVLLGGHHAEIERWRRQEALRNTVAKRPDLIARARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 249 DEAWLASLAKE 259
>sp|Q8Y0V8|TRMD_RALSO tRNA (guanine-N(1)-)-methyltransferase OS=Ralstonia solanacearum
(strain GMI1000) GN=trmD PE=3 SV=1
Length = 262
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/242 (54%), Positives = 180/242 (74%), Gaps = 2/242 (0%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFDVI+LFPEMF A+T GIT RA +++ Y+L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 1 MQFDVISLFPEMFRALTDWGITSRAAKQQVYTLRTWNPRDFTTDNYRTVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKIPK-IIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAID 119
+ML KP+E + AI++ P ++ +SPQG+ LTH +++L + L LLCGRY+AID
Sbjct: 61 VMLAKPLEAALDAIREAQAPAPSHVVLLSPQGRPLTHRRVMELAQLPALTLLCGRYEAID 120
Query: 120 QRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLLDCS 178
QR +D +DEEIS+GDF+LSGGE+ AM +IDA+VR LP VL + + +QDSF+NGLLDC
Sbjct: 121 QRLVDRRVDEEISLGDFVLSGGEIAAMAIIDAVVRQLPGVLGDAQSAVQDSFVNGLLDCP 180
Query: 179 YYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEE 238
+YT+P Y + VP VLL G+H +I+KW+R+ +L T +KRPDLI AR+ L+ +DE
Sbjct: 181 HYTRPEEYEGVRVPDVLLGGHHAEIEKWRRQQALLNTMRKRPDLIEAARRQGLLSRSDEV 240
Query: 239 FL 240
FL
Sbjct: 241 FL 242
>sp|Q63S32|TRMD_BURPS tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia pseudomallei
(strain K96243) GN=trmD PE=3 SV=1
Length = 264
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 IQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K +++ MSPQG LTH + ++ E ++LLCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAAQGVATSRVVMMSPQGAPLTHERVARMAAEPGVVLLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM L+DA+VRLLP VLN+ + +QDSF +GLL
Sbjct: 129 AIDQRLIDRCVDEELSLGDFVLSGGELPAMALMDAVVRLLPGVLNDAQSAVQDSFADGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI +AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGVRVPDVLLGGHHAEIERWRRQEALRNTIAKRPDLIARARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 249 DEAWLASLAKE 259
>sp|A3NC05|TRMD_BURP6 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia pseudomallei
(strain 668) GN=trmD PE=3 SV=1
Length = 264
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 IQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K +++ MSPQG LTH + ++ E ++LLCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAAQGVATSRVVMMSPQGAPLTHERVARMAAEPGVVLLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM L+DA+VRLLP VLN+ + +QDSF +GLL
Sbjct: 129 AIDQRLIDRCVDEELSLGDFVLSGGELPAMALMDAVVRLLPGVLNDAQSAVQDSFADGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI +AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGVRVPDVLLGGHHAEIERWRRQEALRNTIAKRPDLIARARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 249 DEAWLASLAKE 259
>sp|Q3JQ08|TRMD_BURP1 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia pseudomallei
(strain 1710b) GN=trmD PE=3 SV=1
Length = 264
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 IQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K +++ MSPQG LTH + ++ E ++LLCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAAQGVATSRVVMMSPQGAPLTHERVARMAAEPGVVLLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM L+DA+VRLLP VLN+ + +QDSF +GLL
Sbjct: 129 AIDQRLIDRCVDEELSLGDFVLSGGELPAMALMDAVVRLLPGVLNDAQSAVQDSFADGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI +AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGVRVPDVLLGGHHAEIERWRRQEALRNTIAKRPDLIARARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 249 DEAWLASLAKE 259
>sp|A3NXU1|TRMD_BURP0 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia pseudomallei
(strain 1106a) GN=trmD PE=3 SV=1
Length = 264
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 IQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K +++ MSPQG LTH + ++ E ++LLCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAAQGVATSRVVMMSPQGAPLTHERVARMAAEPGVVLLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM L+DA+VRLLP VLN+ + +QDSF +GLL
Sbjct: 129 AIDQRLIDRCVDEELSLGDFVLSGGELPAMALMDAVVRLLPGVLNDAQSAVQDSFADGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI +AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGVRVPDVLLGGHHAEIERWRRQEALRNTIAKRPDLIARARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 249 DEAWLASLAKE 259
>sp|A1V6J2|TRMD_BURMS tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia mallei
(strain SAVP1) GN=trmD PE=3 SV=1
Length = 264
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 IQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K +++ MSPQG LTH + ++ E ++LLCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAAQGVATSRVVMMSPQGAPLTHERVARMAAEPGVVLLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM L+DA+VRLLP VLN+ + +QDSF +GLL
Sbjct: 129 AIDQRLIDRCVDEELSLGDFVLSGGELPAMALMDAVVRLLPGVLNDAQSAVQDSFADGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI +AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGVRVPDVLLGGHHAEIERWRRQEALRNTIAKRPDLIARARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 249 DEAWLASLAKE 259
>sp|Q62M52|TRMD_BURMA tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia mallei
(strain ATCC 23344) GN=trmD PE=3 SV=1
Length = 264
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 IQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K +++ MSPQG LTH + ++ E ++LLCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAAQGVATSRVVMMSPQGAPLTHERVARMAAEPGVVLLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM L+DA+VRLLP VLN+ + +QDSF +GLL
Sbjct: 129 AIDQRLIDRCVDEELSLGDFVLSGGELPAMALMDAVVRLLPGVLNDAQSAVQDSFADGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI +AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGVRVPDVLLGGHHAEIERWRRQEALRNTIAKRPDLIARARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 249 DEAWLASLAKE 259
>sp|A2S4N8|TRMD_BURM9 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia mallei
(strain NCTC 10229) GN=trmD PE=3 SV=1
Length = 264
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 IQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K +++ MSPQG LTH + ++ E ++LLCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAAQGVATSRVVMMSPQGAPLTHERVARMAAEPGVVLLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM L+DA+VRLLP VLN+ + +QDSF +GLL
Sbjct: 129 AIDQRLIDRCVDEELSLGDFVLSGGELPAMALMDAVVRLLPGVLNDAQSAVQDSFADGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI +AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGVRVPDVLLGGHHAEIERWRRQEALRNTIAKRPDLIARARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 249 DEAWLASLAKE 259
>sp|A3MHR9|TRMD_BURM7 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia mallei
(strain NCTC 10247) GN=trmD PE=3 SV=1
Length = 264
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 182/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
+QFDV+TLFPEMF A+T GIT RA ++ ++ L WNPR+F+++NYR +DD PYGGG GM
Sbjct: 9 IQFDVVTLFPEMFRALTDWGITSRAVKQGRFGLRTWNPRDFTTDNYRTVDDRPYGGGPGM 68
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP+E I A K +++ MSPQG LTH + ++ E ++LLCGRY+
Sbjct: 69 VMLAKPLEAAIGAAKAAQAAQGVATSRVVMMSPQGAPLTHERVARMAAEPGVVLLCGRYE 128
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEE+S+GDF+LSGGELPAM L+DA+VRLLP VLN+ + +QDSF +GLL
Sbjct: 129 AIDQRLIDRCVDEELSLGDFVLSGGELPAMALMDAVVRLLPGVLNDAQSAVQDSFADGLL 188
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP VLL G+H +I++W+R+ +L+ T KRPDLI +AR+ K L+
Sbjct: 189 DCPHYTRPEEYEGVRVPDVLLGGHHAEIERWRRQEALRNTIAKRPDLIARARREKLLSRA 248
Query: 236 DEEFLKKINKK 246
DE +L + K+
Sbjct: 249 DEAWLASLAKE 259
>sp|Q0KD79|TRMD_CUPNH tRNA (guanine-N(1)-)-methyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=trmD PE=3 SV=1
Length = 260
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 181/251 (72%), Gaps = 5/251 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFDVITLFP+MF A+T GIT RA ++++Y L WNPR+F+ +NYR IDD PYGGG GM
Sbjct: 1 MQFDVITLFPDMFRALTDWGITSRAAKQQRYGLRTWNPRDFTVDNYRTIDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKI----PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML KP++D I A + P ++ MSPQGK L+H +++L + L+LLCGRY+
Sbjct: 61 VMLAKPLDDAIDAAVAAQAQAGVPEPHVVLMSPQGKTLSHAKVMELAERPGLVLLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D +DEEIS+GDF+LSGGELPAM LIDA+VR LP VL + + +QDSF+NGLL
Sbjct: 121 AIDQRLIDRRVDEEISLGDFVLSGGELPAMALIDAVVRHLPGVLGDAQSAVQDSFVNGLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP +LL G+H +I+KW+R+ +L T KRPDLI ARK LT
Sbjct: 181 DCPHYTRPEEYEGVRVPEILLGGHHAEIEKWRRQQALANTASKRPDLIEAARKQGLLTRA 240
Query: 236 DEEFLKKINKK 246
DE+FL + K
Sbjct: 241 DEKFLSEWAAK 251
>sp|Q46Y84|TRMD_CUPPJ tRNA (guanine-N(1)-)-methyltransferase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=trmD PE=3
SV=1
Length = 260
Score = 291 bits (744), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 180/247 (72%), Gaps = 5/247 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQFDVITLFPEMF A+T GIT RA ++++Y+L WNPR+F+++NYR IDD PYGGG GM
Sbjct: 1 MQFDVITLFPEMFRALTDWGITSRAAKQQRYALRTWNPRDFTTDNYRTIDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML +P++D I A + P ++ MSPQG LTH ++ L + L+LLCGRY+
Sbjct: 61 VMLPRPLDDAIDAASAAQSQAGVDTPHVVLMSPQGATLTHEKVMSLAQRPGLVLLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
AIDQR +D + EEIS+GDF+LSGGELPAM LIDA+VR LP VL + + +QDSF+NGLL
Sbjct: 121 AIDQRLIDRRVHEEISLGDFVLSGGELPAMALIDAVVRHLPGVLGDAQSAVQDSFVNGLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y + VP +LL G+H +I+KW+R+ +L T +KRPDLI ARK LT
Sbjct: 181 DCPHYTRPEEYEGVRVPEILLGGHHAEIEKWRRQQALANTARKRPDLIEAARKQGLLTRA 240
Query: 236 DEEFLKK 242
DE+FL +
Sbjct: 241 DEKFLSE 247
>sp|Q47BI7|TRMD_DECAR tRNA (guanine-N(1)-)-methyltransferase OS=Dechloromonas aromatica
(strain RCB) GN=trmD PE=3 SV=1
Length = 254
Score = 280 bits (716), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 182/252 (72%), Gaps = 10/252 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
++FD ITLFPEMF+A+T+SGITRRA E++++ WNPR+F+ N +R++DD P+GGG GM
Sbjct: 2 IRFDCITLFPEMFAAVTESGITRRALEEQRWQWQGWNPRDFAENAWRRVDDRPFGGGPGM 61
Query: 61 IMLGKPIEDTITAIKKNIKKI----PKIIYMSPQGKKLTHNIIIKLLK-ESNLILLCGRY 115
+M P+E I A K ++ ++IY+SPQG LTH +++L + LILLCGRY
Sbjct: 62 VMQPGPLEKAIAAAKSQQREAGLAKSRVIYLSPQGAPLTHERVMQLATGDEGLILLCGRY 121
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGL 174
+ ID+R ++ +DEEIS+GDF+LSGGELPAM+LIDA+VR LP VL + + ++DSF+ GL
Sbjct: 122 EGIDERLIERCVDEEISIGDFVLSGGELPAMVLIDAVVRQLPGVLGDAASAVEDSFVGGL 181
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LDC +YT+P +Y + VP L+SG+HK+I++W+ K SL T K+RPDL+ ++ L+
Sbjct: 182 LDCPHYTRPEVYEGVSVPETLMSGDHKRIRRWRLKQSLARTRKRRPDLL----AHRVLSA 237
Query: 235 TDEEFLKKINKK 246
+ + L +I+ +
Sbjct: 238 EETQLLTEISGE 249
>sp|Q5NXM5|TRMD_AROAE tRNA (guanine-N(1)-)-methyltransferase OS=Aromatoleum aromaticum
(strain EbN1) GN=trmD PE=3 SV=1
Length = 263
Score = 272 bits (695), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 166/227 (73%), Gaps = 5/227 (2%)
Query: 2 QFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMI 61
+FDVITLFPEMF+A+T SGITRRA E+ Y + +PR+F S+ +R +DD PYGGG GM+
Sbjct: 9 RFDVITLFPEMFAALTASGITRRALERGLYEIAFHSPRDFVSDPHRTVDDRPYGGGPGMV 68
Query: 62 MLGKPIEDTI----TAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQA 117
ML +P+E I TA ++ + ++IY+SPQG+ L H ++++ L LLCGRY+
Sbjct: 69 MLAEPLEKAIGRAKTAQEQALGAAGRVIYLSPQGRPLDHAKVVEMTALPALTLLCGRYEG 128
Query: 118 IDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQ-DSFINGLLD 176
+DQR +D +DEE+S+GDF+LSGGELPAM+L+DAIVR LP LN+ + Q DSF++GLLD
Sbjct: 129 VDQRLIDRCVDEELSLGDFVLSGGELPAMVLLDAIVRQLPGALNDADSAQEDSFVDGLLD 188
Query: 177 CSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLI 223
C +YT+P IY VP VLLSGNH I++W+ K +L T ++RPDL+
Sbjct: 189 CPHYTRPEIYAGERVPQVLLSGNHAAIRRWRLKQALGTTWRRRPDLL 235
>sp|A4SW75|TRMD_POLSQ tRNA (guanine-N(1)-)-methyltransferase OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=trmD PE=3 SV=1
Length = 248
Score = 271 bits (694), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 125/249 (50%), Positives = 178/249 (71%), Gaps = 7/249 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+FDV+TLFPEMFSA+TQ GIT RA ++ S++LWNPR+F + + +DD YGGG GM
Sbjct: 1 MRFDVVTLFPEMFSALTQWGITGRACQQSLASVHLWNPRDFCPDPRKTVDDRAYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKN-----IKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+M+ KP+EDT+ I+ + IK P I ++PQG++ + I +L NL +CGRY
Sbjct: 61 VMMAKPLEDTVAGIQASHQAAGIKSGP-ICLLAPQGERFSQKIATDILDYGNLSFICGRY 119
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL-NNKLNMQDSFINGL 174
+A+DQRF+D +D ++S+GDF+LSGGE+PAM ++DA++RL+P L + + QDSF+NGL
Sbjct: 120 EAVDQRFIDRNVDIQLSIGDFVLSGGEIPAMTIMDAVIRLVPGALGDGESATQDSFMNGL 179
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LD +YT+P IY N+ VP VLL G+H KI W+R+ SL++T + RPDLI AR N LT
Sbjct: 180 LDYPHYTRPEIYENLLVPDVLLGGHHAKIADWRRQKSLELTLRLRPDLIESARANGLLTR 239
Query: 235 TDEEFLKKI 243
DE+FL+ +
Sbjct: 240 EDEQFLRSL 248
>sp|A2SES8|TRMD_METPP tRNA (guanine-N(1)-)-methyltransferase OS=Methylibium
petroleiphilum (strain PM1) GN=trmD PE=3 SV=1
Length = 256
Score = 270 bits (689), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 117/252 (46%), Positives = 171/252 (67%), Gaps = 10/252 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+FDV+TLFPE+F+ G+TRRAFE L LW PR+F+ N YR++DD PYGGG GM
Sbjct: 1 MRFDVLTLFPELFAPFQAVGVTRRAFESGAIDLKLWQPRDFADNAYRRVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKN-----IKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+ML +P+E + A++ + + P +++ SP G LT + L E+ +L+CGRY
Sbjct: 61 VMLVEPLERALAAVRDDQAAAGAARTPVLLF-SPAGAPLTQRRVEALASEAGAVLVCGRY 119
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKL-NMQDSFINGL 174
+ IDQRF+D +DEE+S+GDF+LSGGELPA+ L+DA+ RL P VLN++ + QDSF +GL
Sbjct: 120 EGIDQRFIDRHVDEELSLGDFVLSGGELPALALVDAVARLQPGVLNDQTSHQQDSFSDGL 179
Query: 175 LDCSYYTKPRIYLNME---VPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKF 231
LDC +Y++P + VP L+SG+H +I +W+R+ L++T ++RPDLI AR
Sbjct: 180 LDCPHYSRPEHLGDAAADGVPATLMSGHHAEIARWRRERQLELTARRRPDLIAAARAQGR 239
Query: 232 LTCTDEEFLKKI 243
LT DE +L+ +
Sbjct: 240 LTKADERYLQSL 251
>sp|B1XVN1|TRMD_POLNS tRNA (guanine-N(1)-)-methyltransferase OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=trmD
PE=3 SV=1
Length = 248
Score = 267 bits (683), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 125/249 (50%), Positives = 177/249 (71%), Gaps = 7/249 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+FDV+TLFPEMFSA+TQ GIT RA E+ S++LWNPR+F S+ + +DD YGGG GM
Sbjct: 1 MRFDVVTLFPEMFSALTQWGITGRACEQFLASVHLWNPRDFCSDPRKTVDDRAYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKN-----IKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+M+ KP+EDT+ I+ + IK P I ++PQG++ + I +L NL +CGRY
Sbjct: 61 VMMVKPLEDTVAGIRASHEAAGIKSGP-ICLLAPQGERFSQKIATDILSYGNLSFICGRY 119
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL-NNKLNMQDSFINGL 174
+A+DQRF+D +D ++S+GDF+LSGGE+PAM ++DA++RL+P L + + QDSF+NGL
Sbjct: 120 EAVDQRFVDRNVDLQLSIGDFVLSGGEIPAMAMMDAVIRLIPGALGDGQSATQDSFMNGL 179
Query: 175 LDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTC 234
LD +YT+P IY N+ VP VLL G+H KI W+R+ SL++T + R DLI AR LT
Sbjct: 180 LDYPHYTRPEIYENLSVPDVLLGGHHAKIVDWRRQKSLELTFRLRLDLIESARAKGLLTR 239
Query: 235 TDEEFLKKI 243
DE+FL+ +
Sbjct: 240 EDEQFLRSL 248
>sp|Q1GYT8|TRMD_METFK tRNA (guanine-N(1)-)-methyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=trmD
PE=3 SV=1
Length = 264
Score = 264 bits (675), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 173/250 (69%), Gaps = 9/250 (3%)
Query: 2 QFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMI 61
QFDV+TLFPEMF A+T+ GI+ RA E+ Y L LWNPR+F+++NYR IDD PYGGG GM+
Sbjct: 14 QFDVVTLFPEMFDALTKFGISARAQERGIYELALWNPRDFTTDNYRTIDDRPYGGGPGMV 73
Query: 62 MLGKPIEDTITA--IKKNIKKI--PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQA 117
ML +P+E I A +++ + + P++I++SPQG L H +++L LILL RY+
Sbjct: 74 MLAEPLEKAIAAAKVRQQSRGVENPRVIHLSPQGVPLKHEHVMQLKDVPGLILLASRYEG 133
Query: 118 IDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLD 176
+D+R L +DEE S+GD++LSGGE+PAM ++DAI+R LP L + + +DSF +GLLD
Sbjct: 134 VDERLLSTLVDEEYSIGDYVLSGGEIPAMAILDAIIRQLPGSLGDAGSAEEDSFADGLLD 193
Query: 177 CSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTD 236
C +YT+P +Y +VP VLLSGNH KIK+W+ K SL T +RPDL+ + LT +
Sbjct: 194 CPHYTRPEVYAGQKVPEVLLSGNHAKIKRWRLKQSLARTRARRPDLLAA----RPLTKEE 249
Query: 237 EEFLKKINKK 246
L +I ++
Sbjct: 250 SRLLMEIEQE 259
>sp|Q31HX8|TRMD_THICR tRNA (guanine-N(1)-)-methyltransferase OS=Thiomicrospira crunogena
(strain XCL-2) GN=trmD PE=3 SV=1
Length = 237
Score = 263 bits (673), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 164/223 (73%), Gaps = 1/223 (0%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+FDVITLFPEMFSA+T+SG++RRA++ + Y WNPR ++++ ++ +DD PYGGG GM
Sbjct: 1 MRFDVITLFPEMFSALTESGVSRRAYQDQLYQFKTWNPRTYTTDRHKTVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M+ P++ T+ AI + + P ++Y+SPQG+ LT + +L SN+ L+CGRY+ ID+
Sbjct: 61 LMMYPPLKKTVDAITDEVGEKPYVVYLSPQGRPLTQQKLSELQSHSNVTLVCGRYEGIDE 120
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL-NNKLNMQDSFINGLLDCSY 179
RF++ +DEEI VGDFI+SGGELPAMML+D ++RL+P L +N+ QDSF +GLLDC +
Sbjct: 121 RFIETVVDEEICVGDFIVSGGELPAMMLMDGMIRLIPGALGHNQSAEQDSFSDGLLDCPH 180
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDL 222
YT+P M VP VL G+H KI++W+ + L T +KRPDL
Sbjct: 181 YTRPVEVDGMGVPEVLQEGHHAKIEQWRHEQKLLRTKQKRPDL 223
>sp|B1Y0H7|TRMD_LEPCP tRNA (guanine-N(1)-)-methyltransferase OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=trmD PE=3 SV=1
Length = 249
Score = 263 bits (671), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 162/248 (65%), Gaps = 4/248 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+FDV+TLFPE+F +G+TRRAFE Q + LW R+F+ +NY+++DD PYGGG GM
Sbjct: 1 MRFDVLTLFPELFEPFLHAGVTRRAFESGQVDVKLWQLRDFAEDNYKRVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+ML +P+E + A++ +I+ +P G +T + +L +LLCGRY+ IDQ
Sbjct: 61 VMLVEPLERALRAVRAQAGDAAPLIHFTPAGAPMTQKRVRELAAGPGAVLLCGRYEGIDQ 120
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKL-NMQDSFINGLLDCSY 179
RF+ +DEEIS+GDF+LSGGELPA+ L+DA+ RL P VLN+ + QDSF +GLLDC +
Sbjct: 121 RFISRHVDEEISLGDFVLSGGELPALALLDAVTRLQPGVLNDAASHQQDSFSDGLLDCPH 180
Query: 180 YTKPRIYLNM---EVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTD 236
Y++P VP VLLSG+H ++ W+R+ L+IT +RPDLI AR L+ D
Sbjct: 181 YSRPERLGEAAADAVPAVLLSGHHARVASWRREQQLRITALRRPDLIDAARAAGALSPAD 240
Query: 237 EEFLKKIN 244
E L +
Sbjct: 241 ERLLASLQ 248
>sp|A1TND2|TRMD_ACIAC tRNA (guanine-N(1)-)-methyltransferase OS=Acidovorax citrulli
(strain AAC00-1) GN=trmD PE=3 SV=1
Length = 255
Score = 260 bits (664), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 168/252 (66%), Gaps = 8/252 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+FDVITLFPE+F+ SG+TRRA+ + WNPR+++ NYR++DD P+GGG GM
Sbjct: 1 MRFDVITLFPELFTPFLASGVTRRAYATGLVDVRFWNPRDYAEGNYRRVDDRPFGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKIPK----IIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+M+ +P+E + AI+ + + P+ ++ SP G++L H+ + + +LLCGRY+
Sbjct: 61 VMMAEPLERCLRAIRADRGEAPEAVAPLVMFSPIGRRLDHDGVAGWAAGNGAVLLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQ-DSF---IN 172
+DQRF+D +D ++S+GDF+LSGGE+PAM L+DA+ RL P VLN+ + Q DSF ++
Sbjct: 121 GVDQRFVDAHVDVQLSLGDFVLSGGEIPAMALLDAVARLQPGVLNDAGSHQEDSFNAALD 180
Query: 173 GLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFL 232
GLLDC +YT+P + VP LLSG+H +I++W+R L +T + RPDL+ AR L
Sbjct: 181 GLLDCPHYTRPESWQGQAVPAALLSGHHAQIERWRRDQRLAVTARHRPDLVEAARVAGRL 240
Query: 233 TCTDEEFLKKIN 244
DE L K+N
Sbjct: 241 DRADEAVLAKLN 252
>sp|Q7MBD6|TRMD_CHRVO tRNA (guanine-N(1)-)-methyltransferase OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=trmD PE=3 SV=2
Length = 255
Score = 259 bits (662), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 170/251 (67%), Gaps = 9/251 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
MQ D +TLFPEMF +I + G+++RA + + WNPR+F+ +NYR++DD PYGGG GM
Sbjct: 1 MQIDAVTLFPEMFDSIARFGVSQRALDLGLWQFKAWNPRDFTHDNYRRVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKI----PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+M +P+E + A + ++ ++Y+SPQG +LTH +L + LILLCGRY+
Sbjct: 61 VMQIEPLEQALDAARARQREAGVEASHVVYLSPQGARLTHAKAAELSQRPGLILLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLL 175
ID+R + +DEEIS+GD++LSGGELPAM+L DA+VRLLP LN+ + +DSF++GLL
Sbjct: 121 GIDERLIATQVDEEISIGDYVLSGGELPAMVLADAVVRLLPGALNDAQSAYEDSFVDGLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P Y M VP VLLSGNH I KW+ K SL T ++RP+L+ +++ LT
Sbjct: 181 DCPHYTRPEEYRGMRVPDVLLSGNHALIAKWRLKQSLGRTWQRRPELL----QDRVLTKQ 236
Query: 236 DEEFLKKINKK 246
+ L + ++
Sbjct: 237 ESRLLAEYQQE 247
>sp|Q88MV4|TRMD_PSEPK tRNA (guanine-N(1)-)-methyltransferase OS=Pseudomonas putida
(strain KT2440) GN=trmD PE=3 SV=1
Length = 250
Score = 259 bits (662), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 173/247 (70%), Gaps = 9/247 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
++ DVITLFPEMFSAIT+ GIT RA ++ + WNPR+++++ + +DD P+GGG GM
Sbjct: 4 LRVDVITLFPEMFSAITEYGITSRAVKQGLLQVTCWNPRDYTTDRHHTVDDRPFGGGPGM 63
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M KP+ED + + ++ K+IY+SPQG+KLT + L ++ +LIL+ GRY+ ID+
Sbjct: 64 VMKIKPLEDALVSARQATGAAAKVIYLSPQGRKLTQQAVKGLAEQESLILIAGRYEGIDE 123
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSY 179
RF++ +DEE S+GD++LSGGELPAM+LIDA+ RLLP L + + +DSF +GLLDC +
Sbjct: 124 RFIEAHVDEEWSIGDYVLSGGELPAMVLIDAVTRLLPGALGHVDSAEEDSFTDGLLDCPH 183
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLI----IKARKNKFLTCT 235
YT+P +Y + VP VLLSGNH I++W+ K SL T ++R DL+ + + K L
Sbjct: 184 YTRPEVYADQRVPDVLLSGNHAHIRRWRMKQSLGRTFERRADLLESRSLSGEEKKLL--- 240
Query: 236 DEEFLKK 242
EE+L++
Sbjct: 241 -EEYLRE 246
>sp|B1JDE3|TRMD_PSEPW tRNA (guanine-N(1)-)-methyltransferase OS=Pseudomonas putida
(strain W619) GN=trmD PE=3 SV=1
Length = 250
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 173/247 (70%), Gaps = 9/247 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
++ DVITLFPEMFSAIT+ GIT RA ++ + WNPR+++++ + +DD P+GGG GM
Sbjct: 4 LRVDVITLFPEMFSAITEYGITSRAVKQGLLQVTCWNPRDYTTDRHHTVDDRPFGGGPGM 63
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M KP+ED + + ++ K+IY+SPQG+KLT + L ++ +LIL+ GRY+ ID+
Sbjct: 64 VMKIKPLEDALVSARQATGASAKVIYLSPQGRKLTQQAVKGLAEQESLILIAGRYEGIDE 123
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSY 179
RF++ +DEE S+GD++LSGGELPAM+LIDA+ RLLP L + + +DSF +GLLDC +
Sbjct: 124 RFIEAHVDEEWSIGDYVLSGGELPAMVLIDAVTRLLPGALGHVDSAEEDSFTDGLLDCPH 183
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLI----IKARKNKFLTCT 235
YT+P +Y + VP VLLSGNH I++W+ K SL T ++R DL+ + + K L
Sbjct: 184 YTRPEVYADQRVPDVLLSGNHAHIRRWRMKQSLGRTFERRADLLESRSLSGEEKKLL--- 240
Query: 236 DEEFLKK 242
EE+L++
Sbjct: 241 -EEYLRE 246
>sp|B0KRI3|TRMD_PSEPG tRNA (guanine-N(1)-)-methyltransferase OS=Pseudomonas putida
(strain GB-1) GN=trmD PE=3 SV=1
Length = 250
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 171/244 (70%), Gaps = 9/244 (3%)
Query: 4 DVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIML 63
DVITLFPEMFSAIT+ GIT RA ++ + WNPR+++++ + +DD P+GGG GM+M
Sbjct: 7 DVITLFPEMFSAITEYGITSRAVKQGLLQVTCWNPRDYTTDRHHTVDDRPFGGGPGMVMK 66
Query: 64 GKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFL 123
KP+ED + + ++ K+IY+SPQG+KLT + L ++ +LIL+ GRY+ ID+RF+
Sbjct: 67 IKPLEDALVSARQATGAAAKVIYLSPQGRKLTQQAVKGLAEQESLILIAGRYEGIDERFI 126
Query: 124 DNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSYYTK 182
+ +DEE S+GD++LSGGELPAM+LIDA+ RLLP L + + +DSF +GLLDC +YT+
Sbjct: 127 EAHVDEEWSIGDYVLSGGELPAMVLIDAVTRLLPGALGHVDSAEEDSFTDGLLDCPHYTR 186
Query: 183 PRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLI----IKARKNKFLTCTDEE 238
P +Y + VP VLLSGNH I++W+ K SL T ++R DL+ + + K L EE
Sbjct: 187 PEVYADQRVPDVLLSGNHAHIRRWRMKQSLGRTFERRADLLESRSLSGEEKKLL----EE 242
Query: 239 FLKK 242
+L++
Sbjct: 243 YLRE 246
>sp|Q1I5Z0|TRMD_PSEE4 tRNA (guanine-N(1)-)-methyltransferase OS=Pseudomonas entomophila
(strain L48) GN=trmD PE=3 SV=1
Length = 250
Score = 258 bits (659), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 173/247 (70%), Gaps = 9/247 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
++ +V+TLFPEMFSAIT+ GIT RA ++ + WNPR+++++ + +DD P+GGG GM
Sbjct: 4 LRVEVVTLFPEMFSAITEYGITSRAVKQGLLQVTCWNPRDYTTDRHHTVDDRPFGGGPGM 63
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M KP+ED + + ++ K+IY+SPQG+KLT + L ++ +LIL+ GRY+ ID+
Sbjct: 64 VMKIKPLEDALASARQATGAAAKVIYLSPQGRKLTQQAVKGLAEQESLILIAGRYEGIDE 123
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSY 179
RF++ +DEE S+GD++LSGGELPAM+LIDA+ RLLP L + + +DSF +GLLDC +
Sbjct: 124 RFIEAHVDEEWSIGDYVLSGGELPAMVLIDAVTRLLPGALGHVDSAEEDSFTDGLLDCPH 183
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLI----IKARKNKFLTCT 235
YT+P +Y + VP VLLSGNH I++W+ K SL T ++R DL+ + + K L
Sbjct: 184 YTRPEVYADQRVPDVLLSGNHAHIRRWRMKQSLGRTFERRADLLESRSLSGEEKKLL--- 240
Query: 236 DEEFLKK 242
EE+L++
Sbjct: 241 -EEYLRE 246
>sp|Q21YL6|TRMD_RHOFD tRNA (guanine-N(1)-)-methyltransferase OS=Rhodoferax ferrireducens
(strain DSM 15236 / ATCC BAA-621 / T118) GN=trmD PE=3
SV=1
Length = 248
Score = 258 bits (658), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 170/246 (69%), Gaps = 4/246 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+FD++TLFPE+F+ SGITRRAFE + L NPR+F++ NYR++DD P+GGG GM
Sbjct: 1 MRFDIVTLFPELFAPFLTSGITRRAFESGLVDVQLANPRDFAAGNYRRVDDRPFGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M+ +P+ + +I+ +I ++ SP G+ L H ++ + IL+CGRY+ +DQ
Sbjct: 61 VMMAEPLAQCLKSIQSQRTEIAPVLLFSPAGQTLNHAMVQRWSDSQGAILICGRYEGLDQ 120
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNK-LNMQDSF---INGLLD 176
RF+D ++ E+IS+GDF+LSGGE+ AM L+DA+ RL P VLN + QDSF ++GLLD
Sbjct: 121 RFIDAYVTEQISLGDFVLSGGEIAAMALLDAVARLQPGVLNAADSHQQDSFNPVLDGLLD 180
Query: 177 CSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTD 236
C +YT+P +L VP VLLSG+H +I++W+R+ L +T + RP+LI +AR++ L+ D
Sbjct: 181 CPHYTRPENWLGRPVPEVLLSGHHVQIERWRREQRLALTLRLRPELIDQARRDGRLSRAD 240
Query: 237 EEFLKK 242
E FL
Sbjct: 241 EAFLAS 246
>sp|A5W8C1|TRMD_PSEP1 tRNA (guanine-N(1)-)-methyltransferase OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=trmD PE=3 SV=1
Length = 250
Score = 258 bits (658), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 173/247 (70%), Gaps = 9/247 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
++ DVITLFPEMFSAIT+ GIT RA ++ + WNPR+++++ + +DD P+GGG GM
Sbjct: 4 LRVDVITLFPEMFSAITEYGITSRAVKQGLLQVICWNPRDYTTDRHHTVDDRPFGGGPGM 63
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M KP+ED + + ++ K+IY+SPQG+KLT + L ++ +LIL+ GRY+ ID+
Sbjct: 64 VMKIKPLEDALVSARQATGAAAKVIYLSPQGRKLTQQAVKGLAEQESLILIAGRYEGIDE 123
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSY 179
RF++ +DEE S+GD++LSGGELPAM+LIDA+ RLLP L + + +DSF +GLLDC +
Sbjct: 124 RFIEAHVDEEWSIGDYVLSGGELPAMVLIDAVTRLLPGALGHVDSAEEDSFTDGLLDCPH 183
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLI----IKARKNKFLTCT 235
YT+P +Y + VP VLLSGNH I++W+ K SL T ++R DL+ + + K L
Sbjct: 184 YTRPEVYADQRVPDVLLSGNHAHIRRWRMKQSLGRTFERRADLLESRSLSGEEKKLL--- 240
Query: 236 DEEFLKK 242
EE+L++
Sbjct: 241 -EEYLRE 246
>sp|C1DBG0|TRMD_LARHH tRNA (guanine-N(1)-)-methyltransferase OS=Laribacter hongkongensis
(strain HLHK9) GN=trmD PE=3 SV=1
Length = 257
Score = 258 bits (658), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 173/251 (68%), Gaps = 9/251 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+ D +TLF MF A+T+SG+TRRA E+ +S + WNPR+F+++NY +DD PYGGG GM
Sbjct: 1 MRIDAVTLFAPMFEALTRSGVTRRAAEQGIWSFHAWNPRDFTTDNYHTVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDT----ITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
+ML +P++ + A + + + IY+SPQG++LT + +L L+LLCGRY+
Sbjct: 61 VMLCEPLQQALRQAVAAQQADGAARIRRIYLSPQGEQLTDRKVQELAGLDGLVLLCGRYE 120
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLL 175
+D+R L + IDEEIS+GD++LSGGELPAM+L+DA+VR LP VLN+ + QDSF GLL
Sbjct: 121 GVDERLLQSEIDEEISIGDYVLSGGELPAMVLMDAVVRRLPGVLNDAQSAEQDSFATGLL 180
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
DC +YT+P ++ + VP VLLSGNH +I KW+ K +L T ++RPDL+ N+ LT
Sbjct: 181 DCPHYTRPEVFDGVRVPDVLLSGNHAEIAKWRLKMALGRTRERRPDLL----ANRQLTKQ 236
Query: 236 DEEFLKKINKK 246
+ L + ++
Sbjct: 237 EARLLAQYQQE 247
>sp|Q12CW4|TRMD_POLSJ tRNA (guanine-N(1)-)-methyltransferase OS=Polaromonas sp. (strain
JS666 / ATCC BAA-500) GN=trmD PE=3 SV=1
Length = 259
Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 113/252 (44%), Positives = 169/252 (67%), Gaps = 10/252 (3%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+FDVITLFPE+F SG+TRRA+E + LWNPR+F+ +YR++DD P+GGG GM
Sbjct: 1 MRFDVITLFPELFGPFLVSGVTRRAYETGLVEVKLWNPRDFAEGSYRRVDDRPFGGGPGM 60
Query: 61 IMLGKPIEDTITAIKK-----NIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRY 115
+M+ +P+ + I+ + +P +++ SP G+ L H + S +L+CGRY
Sbjct: 61 VMMAEPLTLCLEQIRAERTAGGVADVPTVLF-SPIGEALNHAGVEAWSASSGAVLVCGRY 119
Query: 116 QAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQ-DSF---I 171
+ +DQRF++ ID +IS+GDF+LSGGE+ AM L+DA+ RL P VLN++ + Q DSF +
Sbjct: 120 EGLDQRFIETHIDRQISLGDFVLSGGEIAAMALLDAVARLQPGVLNDEGSHQLDSFNPAL 179
Query: 172 NGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKF 231
+GLLDC +YT+P + VP +LLSGNH +I++W+R+ L +T ++RP+L+ KAR
Sbjct: 180 DGLLDCPHYTRPESWRGQPVPPILLSGNHAQIERWRREERLALTQRQRPELVQKARAAGH 239
Query: 232 LTCTDEEFLKKI 243
LT DE FL +
Sbjct: 240 LTARDEAFLADL 251
>sp|Q3SGC2|TRMD_THIDA tRNA (guanine-N(1)-)-methyltransferase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=trmD PE=3 SV=1
Length = 236
Score = 256 bits (653), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 161/234 (68%), Gaps = 4/234 (1%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+FD +TLF EMF A+ GITRRA ++ Y WNPR F+ + +R +DD PYGGG GM
Sbjct: 1 MRFDAVTLFAEMFDAVLDYGITRRALDRGLYRFKSWNPRAFTDDPHRTVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKK---IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQA 117
+ML +P++ + A+++ + P +++ SP+G+ LT +++L L+LLCGRY+
Sbjct: 61 LMLAEPLDRALNAVQQELASENLAPWVVHFSPRGRPLTQQRVMELKDMPALVLLCGRYEG 120
Query: 118 IDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLLD 176
ID+R L +DEE+S+GDF+LSGGELPA+ L+DAIVR LP LN+ + QDSF GLLD
Sbjct: 121 IDERLLQRRVDEEVSLGDFVLSGGELPALALMDAIVRQLPGALNDAESAAQDSFSAGLLD 180
Query: 177 CSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNK 230
C +YT+P ++ M VP VL SGNH I KW+ + SL++T RPDL+ +A+ ++
Sbjct: 181 CPHYTRPEVWQGMAVPQVLKSGNHAAIAKWRHEQSLRLTGALRPDLLERAQHDE 234
>sp|A8FSE9|TRMD_SHESH tRNA (guanine-N(1)-)-methyltransferase OS=Shewanella sediminis
(strain HAW-EB3) GN=trmD PE=3 SV=1
Length = 242
Score = 255 bits (651), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 165/239 (69%), Gaps = 7/239 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M+ V+TLFPEMF A+T G+T RA + L WNPR+F+ + ++ +DD PYGGG GM
Sbjct: 1 MRLGVVTLFPEMFRAVTDFGVTGRAVKNGLLELQTWNPRDFTHDKHKTVDDRPYGGGPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M+ +P+ D I A K K+IY+SPQG+KLT + +L+K +LIL+CGRY+ ID+
Sbjct: 61 LMMVQPLRDAIHAAKAATGDSAKVIYLSPQGRKLTQQGVEELVKSDSLILVCGRYEGIDE 120
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSY 179
R + +DEE S+GD++LSGGELPAM LID++ RL+P VL K + QDSF +GLLDC +
Sbjct: 121 RIIQTEVDEEWSIGDYVLSGGELPAMTLIDSVSRLVPGVLGKKASAEQDSFSDGLLDCPH 180
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEE 238
YT+P N++VP VLLSGNH+ I++W+ + SL T +RPDL+ + L TDE+
Sbjct: 181 YTRPETLDNLDVPAVLLSGNHEHIRRWRLQQSLGRTLLRRPDLL------ENLALTDEQ 233
>sp|Q4ZWY7|TRMD_PSEU2 tRNA (guanine-N(1)-)-methyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=trmD PE=3 SV=1
Length = 250
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 162/224 (72%), Gaps = 1/224 (0%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
++ +VI+LFPEMFSAI++ GIT RA ++ L WNPR+++++ + +DD P+GGG GM
Sbjct: 4 LRIEVISLFPEMFSAISEYGITSRAVKQGLLQLTCWNPRDYTTDRHHTVDDRPFGGGPGM 63
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M KP+ED + ++ K+IY+SPQG++L + + +L +E +IL+ GRY+ ID+
Sbjct: 64 VMKIKPLEDALVQARQAAGDAAKVIYLSPQGRQLNQSAVRELAQEEAIILIAGRYEGIDE 123
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSY 179
RF+D +DEE S+GD++LSGGELPAM+LIDA+ RLLP L + + +DSF +GLLDC +
Sbjct: 124 RFIDAHVDEEWSIGDYVLSGGELPAMVLIDAVTRLLPGALGHVDSAEEDSFTDGLLDCPH 183
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLI 223
YT+P +Y + VP VLLSGNH I++W+ + SL T ++R DL+
Sbjct: 184 YTRPEVYADQRVPDVLLSGNHAHIRRWRLQQSLGRTYERRADLL 227
>sp|Q48LV8|TRMD_PSE14 tRNA (guanine-N(1)-)-methyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=trmD PE=3 SV=1
Length = 250
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 162/224 (72%), Gaps = 1/224 (0%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
++ +VI+LFPEMFSAI++ GIT RA ++ L WNPR+++++ + +DD P+GGG GM
Sbjct: 4 LRIEVISLFPEMFSAISEYGITSRAVKQGLLQLTCWNPRDYTTDRHHTVDDRPFGGGPGM 63
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M KP+ED + ++ K+IY+SPQG++L + + +L +E +IL+ GRY+ ID+
Sbjct: 64 VMKIKPLEDALVQARQAAGDAAKVIYLSPQGRQLNQSAVRELAQEEAIILIAGRYEGIDE 123
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSY 179
RF+D +DEE S+GD++LSGGELPAM+LIDA+ RLLP L + + +DSF +GLLDC +
Sbjct: 124 RFIDAHVDEEWSIGDYVLSGGELPAMVLIDAVTRLLPGALGHVDSAEEDSFTDGLLDCPH 183
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLI 223
YT+P +Y + VP VLLSGNH I++W+ + SL T ++R DL+
Sbjct: 184 YTRPEVYADQRVPDVLLSGNHAHIRRWRLQQSLGRTYERRADLL 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,231,624
Number of Sequences: 539616
Number of extensions: 3893680
Number of successful extensions: 12351
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 10338
Number of HSP's gapped (non-prelim): 678
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)