Query psy3767
Match_columns 246
No_of_seqs 103 out of 1049
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 16:44:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00026 trmD tRNA (guanine-N( 100.0 1E-121 3E-126 820.3 24.8 241 1-245 1-242 (244)
2 TIGR00088 trmD tRNA (guanine-N 100.0 3E-121 7E-126 812.9 23.0 231 1-238 1-233 (233)
3 COG0336 TrmD tRNA-(guanine-N1) 100.0 1E-119 2E-124 803.1 22.6 237 1-243 1-239 (240)
4 PRK14599 trmD tRNA (guanine-N( 100.0 5E-116 1E-120 774.9 22.3 218 1-221 1-221 (222)
5 PRK01037 trmD tRNA (guanine-N( 100.0 1E-112 3E-117 794.6 22.6 222 1-226 1-223 (357)
6 PF01746 tRNA_m1G_MT: tRNA (Gu 100.0 3.4E-44 7.4E-49 303.9 13.3 184 23-220 2-186 (186)
7 PRK00103 rRNA large subunit me 95.7 0.041 8.8E-07 47.1 6.9 139 1-156 1-146 (157)
8 PF02590 SPOUT_MTase: Predicte 95.2 0.039 8.5E-07 47.0 5.4 134 1-155 1-145 (155)
9 COG1576 Uncharacterized conser 94.7 0.37 8E-06 41.8 10.0 137 1-155 1-144 (155)
10 TIGR00246 tRNA_RlmH_YbeA rRNA 93.7 0.22 4.8E-06 42.5 6.5 110 29-155 28-142 (153)
11 PF03587 EMG1: EMG1/NEP1 methy 83.8 0.97 2.1E-05 40.3 2.9 60 81-143 126-193 (202)
12 PRK04171 ribosome biogenesis p 78.9 3.4 7.5E-05 37.6 4.7 59 82-144 147-208 (222)
13 PRK03958 tRNA 2'-O-methylase; 76.9 7.2 0.00015 34.5 6.0 88 61-159 60-151 (176)
14 COG1756 Mra1 Uncharacterized c 73.3 4.7 0.0001 37.0 4.0 58 82-140 148-205 (223)
15 KOG3073|consensus 71.7 3.1 6.7E-05 38.1 2.5 56 81-139 159-217 (236)
16 PF14419 SPOUT_MTase_2: AF2226 64.6 23 0.0005 31.4 6.3 63 81-144 93-158 (173)
17 PRK02135 hypothetical protein; 51.4 28 0.0006 31.5 4.7 92 19-135 84-178 (201)
18 COG0126 Pgk 3-phosphoglycerate 51.0 41 0.00089 33.3 6.2 80 52-138 25-113 (395)
19 cd02933 OYE_like_FMN Old yello 46.0 78 0.0017 29.9 7.1 65 23-90 159-228 (338)
20 smart00854 PGA_cap Bacterial c 44.4 50 0.0011 29.0 5.2 67 65-138 160-237 (239)
21 PLN02450 1-aminocyclopropane-1 41.9 55 0.0012 31.9 5.5 53 59-112 170-229 (468)
22 COG0298 HypC Hydrogenase matur 41.3 7.8 0.00017 30.6 -0.3 24 116-139 24-47 (82)
23 PF04013 Methyltrn_RNA_2: Puta 40.1 45 0.00098 30.1 4.3 72 57-137 105-180 (199)
24 PRK10409 hydrogenase assembly 38.7 8.9 0.00019 30.5 -0.3 30 115-144 21-55 (90)
25 PLN02607 1-aminocyclopropane-1 38.3 83 0.0018 30.5 6.1 51 61-112 181-238 (447)
26 PLN02282 phosphoglycerate kina 37.5 80 0.0017 31.3 5.9 81 52-138 28-117 (401)
27 PF02310 B12-binding: B12 bind 36.8 1.9E+02 0.004 22.0 6.9 97 16-146 14-118 (121)
28 COG0565 LasT rRNA methylase [T 35.8 62 0.0013 30.1 4.5 135 1-153 3-150 (242)
29 KOG4031|consensus 35.5 81 0.0017 29.0 5.1 24 189-214 96-119 (216)
30 COG2247 LytB Putative cell wal 33.2 71 0.0015 31.1 4.6 37 81-119 52-89 (337)
31 TIGR02026 BchE magnesium-proto 32.1 3.7E+02 0.008 26.6 9.6 107 15-153 21-136 (497)
32 KOG3638|consensus 30.7 19 0.00042 35.2 0.5 16 129-144 226-241 (414)
33 PF00588 SpoU_methylase: SpoU 30.7 1.4E+02 0.003 23.9 5.4 105 16-134 12-123 (142)
34 PF09936 Methyltrn_RNA_4: SAM- 30.1 1.7E+02 0.0037 26.3 6.2 64 62-125 85-152 (185)
35 COG0602 NrdG Organic radical a 29.9 50 0.0011 29.3 2.9 68 132-203 71-147 (212)
36 TIGR00074 hypC_hupF hydrogenas 29.9 14 0.00031 28.3 -0.4 29 114-143 20-48 (76)
37 PRK11572 copper homeostasis pr 29.8 3.9E+02 0.0085 24.8 8.7 114 18-155 39-164 (248)
38 PRK08776 cystathionine gamma-s 29.1 1.1E+02 0.0023 29.5 5.2 32 81-112 145-180 (405)
39 COG4270 Predicted membrane pro 28.2 16 0.00036 30.9 -0.4 34 178-211 23-70 (131)
40 COG3874 Uncharacterized conser 28.1 19 0.00041 30.8 -0.1 41 49-94 59-99 (138)
41 PF01455 HupF_HypC: HupF/HypC 27.9 17 0.00037 27.1 -0.3 26 114-140 22-47 (68)
42 PRK08064 cystathionine beta-ly 27.9 84 0.0018 29.8 4.2 32 81-112 138-173 (390)
43 PRK01207 methionine synthase; 27.4 53 0.0011 31.7 2.8 86 113-212 30-116 (343)
44 PF13380 CoA_binding_2: CoA bi 27.2 2.8E+02 0.0061 22.0 6.5 85 18-111 16-106 (116)
45 cd02931 ER_like_FMN Enoate red 27.1 1.9E+02 0.0041 27.7 6.5 52 23-77 157-214 (382)
46 TIGR02874 spore_ytfJ sporulati 27.0 18 0.00038 30.4 -0.5 20 49-68 64-83 (125)
47 TIGR00725 conserved hypothetic 26.9 29 0.00062 29.4 0.8 37 88-125 13-49 (159)
48 cd07409 MPP_CD73_N CD73 ecto-5 26.8 99 0.0021 28.0 4.3 31 82-114 184-214 (281)
49 PF13941 MutL: MutL protein 26.5 1.6E+02 0.0034 29.7 5.9 71 53-125 72-144 (457)
50 COG2425 Uncharacterized protei 26.4 2E+02 0.0043 29.0 6.6 111 9-125 288-418 (437)
51 cd06384 PBP1_NPR_B Ligand-bind 26.4 49 0.0011 30.7 2.3 45 97-142 194-238 (399)
52 PRK00955 hypothetical protein; 26.3 2.9E+02 0.0062 29.0 7.9 120 16-153 29-178 (620)
53 PRK13523 NADPH dehydrogenase N 25.9 2.7E+02 0.0059 26.3 7.2 64 23-90 149-217 (337)
54 PRK15407 lipopolysaccharide bi 25.8 1.3E+02 0.0028 29.3 5.1 64 81-147 159-232 (438)
55 cd06189 flavin_oxioreductase N 25.5 2.4E+02 0.0051 24.0 6.2 109 54-170 104-224 (224)
56 cd04733 OYE_like_2_FMN Old yel 25.4 2.2E+02 0.0047 26.6 6.4 53 23-78 156-213 (338)
57 cd00245 Glm_e Coenzyme B12-dep 25.2 30 0.00065 34.5 0.7 65 142-210 328-412 (428)
58 PRK07671 cystathionine beta-ly 25.2 1.2E+02 0.0027 28.6 4.8 32 81-112 134-169 (377)
59 cd06369 PBP1_GC_C_enterotoxin_ 25.1 80 0.0017 31.1 3.6 42 96-142 199-240 (380)
60 COG3967 DltE Short-chain dehyd 24.4 84 0.0018 29.3 3.4 35 83-117 6-40 (245)
61 PRK13738 conjugal transfer pil 23.8 58 0.0013 29.5 2.2 58 81-147 100-160 (209)
62 PRK10413 hydrogenase 2 accesso 23.8 35 0.00076 26.6 0.7 30 115-144 24-56 (82)
63 KOG0365|consensus 23.7 55 0.0012 32.5 2.2 22 54-75 139-160 (423)
64 COG1901 Uncharacterized conser 23.6 1.3E+02 0.0028 27.3 4.3 69 58-135 105-176 (197)
65 smart00391 MBD Methyl-CpG bind 23.0 53 0.0011 25.0 1.5 24 81-104 27-52 (77)
66 PRK02261 methylaspartate mutas 22.8 4.2E+02 0.0092 21.8 7.0 77 66-154 42-132 (137)
67 PRK05665 amidotransferase; Pro 22.6 2.4E+02 0.0051 25.4 5.9 74 1-74 3-83 (240)
68 cd03805 GT1_ALG2_like This fam 22.5 2.9E+02 0.0064 24.7 6.5 113 49-168 208-336 (392)
69 PF01426 BAH: BAH domain; Int 22.3 49 0.0011 25.2 1.2 15 129-143 1-15 (119)
70 PRK10039 hypothetical protein; 22.1 1.8E+02 0.0039 24.7 4.6 38 68-105 88-126 (127)
71 cd00158 RHOD Rhodanese Homolog 22.1 2.8E+02 0.006 19.1 5.3 36 81-117 50-87 (89)
72 PF01994 Trm56: tRNA ribose 2' 22.0 1.5E+02 0.0033 24.9 4.2 81 68-158 14-95 (120)
73 PF12708 Pectate_lyase_3: Pect 21.7 34 0.00074 28.3 0.3 42 35-92 1-42 (225)
74 PLN02376 1-aminocyclopropane-1 21.0 2E+02 0.0043 28.5 5.5 50 62-112 181-237 (496)
75 PLN03241 magnesium chelatase s 20.6 2.4E+02 0.0053 32.2 6.5 41 1-43 69-111 (1353)
76 PF00117 GATase: Glutamine ami 20.2 1E+02 0.0022 25.6 2.9 64 11-76 4-70 (192)
77 COG0420 SbcD DNA repair exonuc 20.1 89 0.0019 29.4 2.7 28 126-156 36-72 (390)
78 cd06386 PBP1_NPR_C_like Ligand 20.1 1.6E+02 0.0035 27.4 4.4 46 96-142 185-230 (387)
No 1
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=100.00 E-value=1.3e-121 Score=820.30 Aligned_cols=241 Identities=50% Similarity=0.851 Sum_probs=233.6
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|+|||||||++++++||+|||+++|+|++++||+||||.|||++|||+||||||||||++||+++||++++....+
T Consensus 1 m~~~vlTlFPe~f~~~~~~si~grA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~epi~~al~~~~~~~~~ 80 (244)
T PRK00026 1 MRIDVLTLFPEMFPGPLEYSILGRALEKGLLELEVHNPRDFTTDKHRTVDDTPYGGGAGMVMKPEPLFDAIDAAKAAAGE 80 (244)
T ss_pred CEEEEEEEChHhhhhhhhccHHHHHHHCCCeEEEEEcchhccCCCCCCCCCCCCCCCccceecHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999753223
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
+++||||||||++|||++|++||++++|||||||||||||||+++++|||||||||||||||+|||||||||+|||||||
T Consensus 81 ~~~vi~lsP~G~~f~Q~~a~~ls~~~~lillCGrYEGiDeRv~~~~vdeeiSiGDyVLtGGElaAmv~iDav~RllPGVl 160 (244)
T PRK00026 81 KAKVILLSPQGKPFTQADARELAKEEHLILLCGRYEGIDERVIEHYVDEEISIGDYVLTGGELAAMVLIDAVVRLLPGVL 160 (244)
T ss_pred CCeEEEECCCCCcCCHHHHHHHhCCCCEEEEeccccChHHHHHhhhCcEEEeeccEEecCchHHHHHHHHHHHHcCCCcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHHHH
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF 239 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~~~ 239 (246)
||++|+ +|||+||||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||+++.+ +++++++
T Consensus 161 g~~~S~~~eSF~~gLLeyPqYTRP~~~~g~~VP~VLlSGnH~~I~~WR~~~sl~~T~~~RPDL~~~~~l----~~~~~~~ 236 (244)
T PRK00026 161 GNEESAEEDSFSDGLLEYPHYTRPAEFRGMKVPEVLLSGNHAKIARWRRKQSLERTKLRRPDLLEKLAL----TKEDKKL 236 (244)
T ss_pred CCccccccccccCCCCCCCCCCChHhhCCCCCcccccCCCHHHHHHHHHHHHHHHHHHhChhHHhhccC----CHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999999999877 9999999
Q ss_pred HHHHhh
Q psy3767 240 LKKINK 245 (246)
Q Consensus 240 l~~~~~ 245 (246)
|.++++
T Consensus 237 l~~~~~ 242 (244)
T PRK00026 237 LAELKK 242 (244)
T ss_pred HHHHhc
Confidence 998864
No 2
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=100.00 E-value=3.3e-121 Score=812.92 Aligned_cols=231 Identities=46% Similarity=0.814 Sum_probs=225.7
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|||||||||++++++||++||+++|++++++||+||||.|||++|||+||||||||||++||+++||++++..
T Consensus 1 M~~~vlTlFPe~f~~~~~~siigrA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~epl~~al~~~~~~--- 77 (233)
T TIGR00088 1 MKIGVLTLFPEMFWPYLESSILGRAQKKNLVSFEVVNPRDFSKDKHKTVDDRPYGGGAGMVLKPEPIRDALHSVKAP--- 77 (233)
T ss_pred CEEEEEEEChHhhhhhhhccHHHHHHHCCCeEEEEEcchhccCCCCCcCCCCCCCCCCCcEechHHHHHHHHHHhhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
+++||||||||++|||++|++||++++|+|||||||||||||+++++|||||||||||||||+|||||||||+|||||||
T Consensus 78 ~~~vi~lsP~G~~f~Q~~a~ela~~~~lillCGrYEGiDeRi~~~~vdeeiSIGDyVLtGGElaAmviiDav~RllPGVL 157 (233)
T TIGR00088 78 AGTVILLSPQGRKFDQAGARELAQNEHLILICGRYEGFDERIIQLEVDEEISIGDFVLTGGELPALTLIDSVVRLIPGVL 157 (233)
T ss_pred CCcEEEECCCCCcCCHHHHHHHhCCCCEEEEeccccCcHHHHHhccCcEEEeeccEEecCchHHHHHHHHHHHHhCCCcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhh-hcCCCCCHHHHH
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKA-RKNKFLTCTDEE 238 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~-~l~~~l~~~~~~ 238 (246)
||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||+++ .| |++|++
T Consensus 158 g~~~S~~~eSF~~gLLe~P~YTRP~~~~g~~VPeVLlSGnH~~I~~WR~~~sl~~T~~~RPDLl~~~~~l----~~~~~~ 233 (233)
T TIGR00088 158 GKEASLIEESFANGLLDCPHYTRPYDLKGLKVPEVLLSGNHAKIEQWRLKQSLLRTKLRRPDLLKKYLAL----TEEQNK 233 (233)
T ss_pred CCccccccccccCCCCCCCCCCCccccCCCcCchhhcCccHHHHHHHHHHHHHHHHHHhChHHHHHHhhc----CHhhcC
Confidence 999999 999999999999999999999999999999999999999999999999999999999998 77 998863
No 3
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-119 Score=803.06 Aligned_cols=237 Identities=48% Similarity=0.852 Sum_probs=231.1
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|+|||||||.+++++||+|||+++|+|++++||+||||.|||++|||+|||||+||||+|||+++||+++++..
T Consensus 1 mki~ilTlFPemf~~~~~~si~grA~~~g~~~~~~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~-- 78 (240)
T COG0336 1 MKIDILTLFPEMFDGYLGYSILGRAIEKGLLSLEVVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAK-- 78 (240)
T ss_pred CeEeEEEeChhhchhhhhhhHHHHHHHcCceEEEeecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
+++||||||||++|||+.|++||++++|||||||||||||||++.++|||||||||||||||+|||||||||+|||||||
T Consensus 79 ~~~vi~lsP~G~~f~Q~~a~eLa~~~~lv~iCGrYEGiDeRvi~~~vdeEiSIGDyVLtGGEl~AmvliDav~RlipGVl 158 (240)
T COG0336 79 KAKVILLSPQGKPFTQARARELAKEEHLVLICGRYEGIDERVIELYVDEEISIGDYVLTGGELAAMVLIDAVVRLIPGVL 158 (240)
T ss_pred CCeEEEECCCCCccCHHHHHHHhcCCCEEEEeccccchhHHHHhhccceEEeeccEEecCccHHHHHHHHHHHHhccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-ccccc-CCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHHH
Q psy3767 161 NNKLNM-QDSFI-NGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEE 238 (246)
Q Consensus 161 g~~~S~-~eSF~-~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~~ 238 (246)
||.+|+ +|||+ ||||||||||||++|+|++||||||||||++|++||++||+++|+.||||||+++.+ ++++++
T Consensus 159 g~~~S~e~dSF~~~gLLe~P~YTRP~~~~g~~VP~VLlSGnH~~I~~WR~~qsl~rT~~rRPDL~~~~~~----~~~~~~ 234 (240)
T COG0336 159 GNEESLEEDSFENNGLLEYPHYTRPREFEGMKVPEVLLSGNHAKIAQWRLEQSLERTKERRPDLLEAHKL----TEEEKK 234 (240)
T ss_pred CCcccccccccccCCccCCCCcCChhhcCCCcCChhhhcCcHHHHHHHHHHHHHHHHHHhChhhhhhhhc----chhhhh
Confidence 999999 99999 599999999999999999999999999999999999999999999999999999988 999998
Q ss_pred HHHHH
Q psy3767 239 FLKKI 243 (246)
Q Consensus 239 ~l~~~ 243 (246)
+|.++
T Consensus 235 ~l~~~ 239 (240)
T COG0336 235 LLKEI 239 (240)
T ss_pred hhhcc
Confidence 88764
No 4
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=100.00 E-value=5.1e-116 Score=774.88 Aligned_cols=218 Identities=33% Similarity=0.619 Sum_probs=212.8
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|+|||||||++++++||++||+++|+++++++|+||||.||||+|||+|||||+||||++||+++||++++..
T Consensus 1 M~~~vlTlFPe~f~~~~~~siigrA~~~gl~~i~~~n~Rdfs~dkh~~VDD~PyGGG~GMvm~~epl~~al~~~~~~--- 77 (222)
T PRK14599 1 MKFNFITLFPEKIQSYFSEGLQQKAIESGVFSINPIQLRDFSGNKHNRVDDTIYGGGPGMLLRVEPIHKALLSLGEK--- 77 (222)
T ss_pred CEEEEEEEChHhhhhhhhccHHHHHHHCCceEEEEEcchhhcCCCCCccCCCCCCCCCCcEecchHHHHHHHHHhhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhc-CCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhcccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLK-ESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKV 159 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~-~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGv 159 (246)
+++||||||||++|||++|++||+ +++|+|||||||||||||+++++|||||||||||||||+|||||||||+||||||
T Consensus 78 ~~~vi~lsP~G~~f~Q~~a~eLa~~~~~liliCGrYEGiDeRv~~~~vdeEiSIGDyVLtGGElaAmv~iDav~RllPGV 157 (222)
T PRK14599 78 KGIVILTSPSGIPFNQTIARELKESGKPLTFISGYYEGVDHRVTEHLVDMEMSLGNYVISAGDLASICIADAVSRLLPGF 157 (222)
T ss_pred CCcEEEECCCCCccCHHHHHHHHhCCCCEEEEeccccCcHHHHHhhhCcEEEeeccEEecCchHHHHHHHHHHHHhCCCc
Confidence 368999999999999999999994 6999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc-cccccC-CCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCch
Q psy3767 160 LNNKLNM-QDSFIN-GLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPD 221 (246)
Q Consensus 160 Lg~~~S~-~eSF~~-gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPD 221 (246)
|||++|+ +|||++ |||||||||||++|+|++||||||||||++|++||++|++++|+++||.
T Consensus 158 lg~~~S~~~eSF~~~gLLe~P~YTRP~~~~g~~VPeVLLSGnH~~I~~WR~~q~~~~t~~~~~~ 221 (222)
T PRK14599 158 LGAEESLLDESHNEPDELEYPQFTKPSEYNGWKVPDVLLSGNHASILAWREQNRKKINHSNYES 221 (222)
T ss_pred cCCcccccccccCCCCCCCCCCcCChhhcCCCcCCccccCccHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999 999996 9999999999999999999999999999999999999999999999984
No 5
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=1.4e-112 Score=794.61 Aligned_cols=222 Identities=40% Similarity=0.772 Sum_probs=217.9
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|||+|+|||||||++++++||+|||+++|++++++||+|||+.|||++|||+|||| +||||++||+++||++++..
T Consensus 1 m~~~vlTlFPe~f~~~l~~si~~rA~~~gl~~i~~~n~Rdf~~dkh~~VDD~pyGG-~GMvm~~epi~~a~~~~~~~--- 76 (357)
T PRK01037 1 MEIDILSLFPDYFDSPLQASILGRAIKQGLLSVQSRDIREFGLGKWKQVDDAPFNG-EGMLLMAEPVVQAIRSVRRE--- 76 (357)
T ss_pred CEEEEEEEChHhhhhhhhccHHHHHHHCCCeEEEEEcchhccCCCCCCCCCCCCCC-CCeEechHHHHHHHHHHHhc---
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999999999753
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
+++||||||||++|||++|++||++++|||||||||||||||+++++|||||||||||||||+|||||||||+|||||||
T Consensus 77 ~~~vi~lsP~G~~f~Q~~a~ela~~~~liliCGrYEGiDeRv~~~~vdeeiSIGDyVLtGGElaAmv~iDav~RllPGVl 156 (357)
T PRK01037 77 KSKVIYLSPQGQLLTAKKSRELASCSHLILLCGHYEGIDERALESEVDEEISIGDYVLTNGGIAALVLIDALSRFIPGVL 156 (357)
T ss_pred CCcEEEECCCCCcCCHHHHHHHhCCCCEEEEeccccCchHHHHhccCceEEeeccEEecCchHHHHHHHHHHHHhCCCcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhh
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKA 226 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~ 226 (246)
||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||+++
T Consensus 157 g~~~S~~~eSF~~gLLe~P~YTRP~~~~g~~VPeVLlSGnH~~I~~WR~~~sl~~T~~~RPDL~~~~ 223 (357)
T PRK01037 157 GNQESAEYDSLENGLLEGPQYTRPRVFEGKEVPEVLLQGDHQAIADWRKQVSLERTRERRPDLYLQY 223 (357)
T ss_pred CCccccccccccCCCCCCCCCCChhhhCCCcCchhhcCccHHHHHHHHHHHHHHHHHHHChHHHHHh
Confidence 999999 999999999999999999999999999999999999999999999999999999999875
No 6
>PF01746 tRNA_m1G_MT: tRNA (Guanine-1)-methyltransferase; InterPro: IPR016009 In transfer RNA many different modified nucleosides are found, especially in the anticodon region. tRNA (guanine-N1-)-methyltransferase 2.1.1.31 from EC is one of several nucleases operating together with the tRNA-modifying enzymes before the formation of the mature tRNA. It catalyses the reaction: S-adenosyl-L-methionine + tRNA -> S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine methylating guanosine(G) to N1-methylguanine (1-methylguanosine (m1G)) at position 37 of tRNAs that read CUN (leucine), CCN(proline), and CGG (arginine) codons. The presence of m1G improves the cellular growth rate and the polypeptide steptime and also prevents the tRNA from shifting the reading frame []. The mechanism of the trmD3-induced frameshift involving mutant tRNA(Pro) and tRNA(Leu) species has been investigated []. It has been suggested that the conformation of the anticodon loop may be a major determining element for the formation of m1G37 in vivo []. ; PDB: 3IEF_A 3KY7_A 1UAL_A 3AXZ_A 1UAM_A 1UAK_A 1UAJ_A 1OY5_B 3KNU_B 3QUV_A ....
Probab=100.00 E-value=3.4e-44 Score=303.87 Aligned_cols=184 Identities=34% Similarity=0.440 Sum_probs=157.2
Q ss_pred HHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCHHHHHHH
Q psy3767 23 RRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKL 102 (246)
Q Consensus 23 ~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~a~~L 102 (246)
++|.++++.++...++|+|+.|||..+|++|||||+||+|+++|+.+++..+. +.+++++||+|++|+|+.+.+|
T Consensus 2 ~~m~~ke~~sl~~Q~~~~y~~nr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~l 76 (186)
T PF01746_consen 2 DLMTEKEIKSLAKQLLRCYSANRRAKVPDQLYGTGFGMVLKPEPEFRALDSVN-----GWRVILLSPQGKPFTQKSAEEL 76 (186)
T ss_dssp HHHHHTTSEEEEEEEGGGGSTSTTG-SEE-BTTS-SS-EE-HHHHHHHHHHHH-----TSEEEEE-TTSEE--HHHHHHH
T ss_pred cChhhcCchhhhhhhHHHhhcCCCCCCCCcEEEeCcccccchhhhhHHHHHHh-----hhccccccccCcchhhHHHHhh
Confidence 68999999999999999999999999999999999999999999999999883 3689999999999999999999
Q ss_pred hcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhcccccCCCCCc-cccccCCCCCCCCCC
Q psy3767 103 LKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSYYT 181 (246)
Q Consensus 103 a~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvLg~~~S~-~eSF~~gLLe~P~YT 181 (246)
+..++||++||||||+|+|+.+..++ +++||+||++||+.+||+++|+..|+.|||. +..|+ .||| ++++||||
T Consensus 77 ~~~~~lVyLs~d~e~~le~~~~~~~~-vyiIGgiVD~~~~k~~~~~~~~~~a~~~Gi~-~~~rLpi~~~---l~~~~~~~ 151 (186)
T PF01746_consen 77 FPKENLVYLSPDSEGVLERVDPDKDD-VYIIGGIVDRNGEKGAMTIADLEKALEPGIR-NTARLPIDSF---LLEYPHYT 151 (186)
T ss_dssp TTSSEEEEEE-BTT-BBHHHHHHHTS-EEESSSS--SCSHHHHHHHHHHHHTTSTTTS-GGGG-SSSCC---S----B-B
T ss_pred ccCCCEEEEECCccccccccccccce-EEEEccEEccCCcccchhhhhHHHHHccCCC-ccccCccccc---ccCCCCCC
Confidence 99999999999999999999987666 9999999999999999999999999999999 99999 9999 99999999
Q ss_pred CCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCc
Q psy3767 182 KPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRP 220 (246)
Q Consensus 182 RP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RP 220 (246)
||..|+ .|||||++|+|+++..| ++|+++|.-+||
T Consensus 152 k~l~in--~V~eILl~~~~~~~~~W--~~A~~~~ip~Rk 186 (186)
T PF01746_consen 152 KVLTIN--QVPEILLSGNHKKIGDW--KEALEKTIPKRK 186 (186)
T ss_dssp SSSEET--E--GGGGSTSHHHHHHH--HHHHHHHHHHHH
T ss_pred cCceEC--chHHHHHhhchhhhchH--HHHHHHHhccCC
Confidence 999999 99999999999999999 899999998886
No 7
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=95.66 E-value=0.041 Score=47.09 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=89.4
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHH-cCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFE-KKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIK 79 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~-~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~ 79 (246)
|||.|+++=- .=+.+...++=.=+-+ +....++++++.+-...+- ......+.+.-.+-+..+ +
T Consensus 1 Mki~I~~vGk-~k~~~~~~~i~~Y~kRl~~~~~~e~~el~~~~~~~~----------~~~~~~~~~E~~~il~~l----~ 65 (157)
T PRK00103 1 MKITIIAVGK-LKPKWLKDGIAEYLKRFPRYLKLELIEIPDEKRPKN----------ADAEQIKAKEGERILAAL----P 65 (157)
T ss_pred CeEEEEEEec-cCcHHHHHHHHHHHHhcCccCCceEEEecCCcCccc----------cCHHHHHHHHHHHHHhhC----C
Confidence 7888888742 2233433333221111 2356788888876554221 001111112212222222 2
Q ss_pred CCCcEEEeCCCCCccC-HHHHHHHhcC-----CCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHH
Q psy3767 80 KIPKIIYMSPQGKKLT-HNIIIKLLKE-----SNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIV 153 (246)
Q Consensus 80 ~~~~vI~lsP~G~~~~-Q~~a~~La~~-----~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~ 153 (246)
++..+|.|.++|+.+| .+.|..|.+. .+++|+-|==.|+++.|++ -.|+.+|+|...++ =++|-+++++-+-
T Consensus 66 ~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~-~a~~~lSLS~mTfp-H~larlvL~EQlY 143 (157)
T PRK00103 66 KGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKK-RADQSLSLSKLTLP-HQLVRVLLAEQLY 143 (157)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHH-hcCceEEeccCCCc-HHHHHHHHHHHHH
Confidence 2468999999999998 4566666432 4899999999999999998 68999999999998 4899999999888
Q ss_pred Hhc
Q psy3767 154 RLL 156 (246)
Q Consensus 154 Rli 156 (246)
|-.
T Consensus 144 Ra~ 146 (157)
T PRK00103 144 RAW 146 (157)
T ss_pred HHH
Confidence 753
No 8
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=95.23 E-value=0.039 Score=47.04 Aligned_cols=134 Identities=18% Similarity=0.295 Sum_probs=74.8
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHH-cCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHH----HHH
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFE-KKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTIT----AIK 75 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~-~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~----~~~ 75 (246)
|||.|+++= ..=+.++..++=.=+-+ +....++++.+++-...+ ...+.+..+ .+.
T Consensus 1 Mki~i~~vG-k~k~~~~~~~~~eY~kRl~~~~~~e~~e~~~~~~~~------------------~~~~~~~~~~E~~~il 61 (155)
T PF02590_consen 1 MKIRIIAVG-KLKEKFLKELIEEYLKRLSRYAKLEIIELKEEKIAK------------------AQSIEKIKEKEGERIL 61 (155)
T ss_dssp -EEEEEEES-SS-SHHHHHHHHHHHHHHCTTSEEEEEEE------T------------------CHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEe-ccCcHHHHHHHHHHHHHcCccCceeEEEeccccccc------------------cccHHHHHHHHHHHHH
Confidence 888888872 22233444443222211 345678888888765411 122222222 122
Q ss_pred hhcCCCCcEEEeCCCCCccC-HHHHHHHhc-----CCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHH
Q psy3767 76 KNIKKIPKIIYMSPQGKKLT-HNIIIKLLK-----ESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLI 149 (246)
Q Consensus 76 ~~~~~~~~vI~lsP~G~~~~-Q~~a~~La~-----~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvli 149 (246)
...+++..+|.|.++|+.+| .+.|+.|.+ ..+++|+-|==.|+++-+.+ -.|+.||++..-++ =+++-++++
T Consensus 62 ~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~-~a~~~lSLS~mTfp-H~larlvL~ 139 (155)
T PF02590_consen 62 KKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRK-RADEKLSLSKMTFP-HQLARLVLL 139 (155)
T ss_dssp CTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHH-H-SEEEES-SS----HHHHHHHHH
T ss_pred hhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHh-hcCceEEEecCCCc-HHHHHHHHH
Confidence 11123578999999999998 467777765 46899999888899999997 57999999999887 478999999
Q ss_pred HHHHHh
Q psy3767 150 DAIVRL 155 (246)
Q Consensus 150 Dav~Rl 155 (246)
+-+-|-
T Consensus 140 EQiYRA 145 (155)
T PF02590_consen 140 EQIYRA 145 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888773
No 9
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.37 Score=41.77 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=89.2
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHc-CCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHH-HHHhhc
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEK-KQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTIT-AIKKNI 78 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~-g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~-~~~~~~ 78 (246)
|||.|+|+= ...+.++..|+-.-+-.- -.+.++++++-+....+-.+ ++.+.+.=. ++.+..
T Consensus 1 Mki~iiaVG-k~~~~~~~~g~~eY~KR~~~~~~leliei~~~~~~~~~~---------------~~~~~~~E~~~il~~i 64 (155)
T COG1576 1 MKINIIAVG-KKKPKYVKDGIAEYLKRFPRYLKLELIEIPEEKRGKNAS---------------AELIKKKEGEAILAAI 64 (155)
T ss_pred CeEEEEEee-ccchHHHHHHHHHHHHHhccccCceEEecCCccCccccC---------------HHHHHHHHHHHHHHhc
Confidence 899999872 233445566665533222 35688888888876654221 333332221 122222
Q ss_pred CCCCcEEEeCCCCCccC-HHHHHHHhcC----CCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHH
Q psy3767 79 KKIPKIIYMSPQGKKLT-HNIIIKLLKE----SNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIV 153 (246)
Q Consensus 79 ~~~~~vI~lsP~G~~~~-Q~~a~~La~~----~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~ 153 (246)
+++.+||.|..+|+.++ .+.|..|... .+|+|+-|==+|.|+.+.. -+|+-+|+|-.=+.= .++=+++++.+-
T Consensus 65 ~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G~~i~f~IGG~~Gl~~~~~~-~a~~~~sls~lT~PH-ql~rlvL~EQiY 142 (155)
T COG1576 65 PKGSYVVLLDIRGKALSSEEFADFLERLRDDGRDISFLIGGADGLSEAVKA-RADQVLSLSKLTLPH-QLVRLVLAEQIY 142 (155)
T ss_pred CCCCeEEEEecCCCcCChHHHHHHHHHHHhcCCeEEEEEeCcccCCHHHHH-HHhhheecccccchh-HHHHHHHHHHHH
Confidence 33569999999999987 5677777542 4699999999999999997 578888887655543 255566777666
Q ss_pred Hh
Q psy3767 154 RL 155 (246)
Q Consensus 154 Rl 155 (246)
|-
T Consensus 143 RA 144 (155)
T COG1576 143 RA 144 (155)
T ss_pred HH
Confidence 63
No 10
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=93.66 E-value=0.22 Score=42.48 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccC-HHHHHHHhc---
Q psy3767 29 KQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLT-HNIIIKLLK--- 104 (246)
Q Consensus 29 g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~-Q~~a~~La~--- 104 (246)
....++++++.+....+-. .+..++..| -.+.+.++ + +..||.|.++|+.+| .+.|..|.+
T Consensus 28 ~~~~~ei~el~~~~~~~~~---------~~~~~~~~E-~~~il~~~----~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~ 92 (153)
T TIGR00246 28 KDAPFELIEIPAGKRGKNA---------DIKRILDKE-GDRILAAI----G-KAHVVTLDIPGKPWTTPQLADTLEKWKT 92 (153)
T ss_pred CcCCeEEEEeCCccccccc---------cHHHHHHHH-HHHHHHhC----C-CCeEEEEcCCCCcCCHHHHHHHHHHHhc
Confidence 3567888888765542210 122333333 22333333 2 368999999999998 456776652
Q ss_pred -CCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHh
Q psy3767 105 -ESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRL 155 (246)
Q Consensus 105 -~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~Rl 155 (246)
..+++|+-|==.|+++-+.+ -.|+.+|+|..-++= ++|-+++++-+-|-
T Consensus 93 ~g~~i~FvIGGa~G~~~~v~~-~a~~~lSLS~mTfpH-~larlvL~EQiYRA 142 (153)
T TIGR00246 93 DGRDVTLLIGGPEGLSPTCKA-AAEQSWSLSKLTLPH-PLVRVIVAESLYRA 142 (153)
T ss_pred cCCeEEEEEcCCCcCCHHHHH-hcCceEEeecCCCcH-HHHHHHHHHHHHHH
Confidence 34799999999999999998 589999999999884 89999999988774
No 11
>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis. They play a role in the methylation reaction of pre-rRNA processing. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases [, ].; GO: 0008168 methyltransferase activity; PDB: 3BBE_B 3BBD_B 3BBH_B 2V3K_A 3OII_B 3OIJ_B 3OIN_A 2V3J_A 3O7B_A.
Probab=83.84 E-value=0.97 Score=40.33 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=36.6
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhc------CCCeEEEccCcchhhHhhhccccc--eeeeecceeecCCch
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLK------ESNLILLCGRYQAIDQRFLDNFID--EEISVGDFILSGGEL 143 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~------~~~lvliCGrYEGiDeRv~~~~vd--eeiSIGDyVLsGGEl 143 (246)
+.++|.||++|++.+ .+++++ .++++|+.|=+-==|-..--.+++ +++||.||-||+--.
T Consensus 126 ~~~~i~ls~~g~~~~---~~~~~~~~~~~~~~~~~~~IGaf~~Gdf~~~~~~~~~~~~~sIs~~~Lsa~~v 193 (202)
T PF03587_consen 126 GSRKILLSEKGEKVD---PKELVKEALLAGDEPVVFVIGAFPHGDFSEEVDYVEADEEISISDYPLSAWTV 193 (202)
T ss_dssp TCEEEEEETTSCEE----HHHHCC--TS-TTCCEEEEEE-SSSS-SCCCCCCHSCEEEEESSSS---HHHH
T ss_pred CCeEEEEcCCCCcCC---HHHHHhhhhccCCCCeEEEEeeecCCCCcccccccccceEEEEeCCChHHHHH
Confidence 468999999999994 455554 468888887654444111112444 999999999985433
No 12
>PRK04171 ribosome biogenesis protein; Provisional
Probab=78.88 E-value=3.4 Score=37.62 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=39.7
Q ss_pred CcEEEeCCCCCccCHHHHHHHh-cCCCeEEEccCc-ch-hhHhhhccccceeeeecceeecCCchh
Q psy3767 82 PKIIYMSPQGKKLTHNIIIKLL-KESNLILLCGRY-QA-IDQRFLDNFIDEEISVGDFILSGGELP 144 (246)
Q Consensus 82 ~~vI~lsP~G~~~~Q~~a~~La-~~~~lvliCGrY-EG-iDeRv~~~~vdeeiSIGDyVLsGGEla 144 (246)
.++|.||++|++.+- +++. ..++++|+-|=+ .| +..-+.+ ++|+.+||++|-||+--.+
T Consensus 147 ~~~i~lS~~g~~~~~---~~~~~~~~~~~~vIGaf~hG~f~~~~~~-~~~~~iSIs~~pLsa~~v~ 208 (222)
T PRK04171 147 DRIILLSEKGELVKP---KELGKENENIAVGIGGFPHGDFSEKVLE-LAKKKYSIYGEPLTAWTVV 208 (222)
T ss_pred CcEEEECCCCcccCH---HHHhhccCCcEEEEccccCCCcchhhHh-hcCeEEEEeCCChHHHHHH
Confidence 579999999997773 3333 356677766543 22 3333444 6889999999999864433
No 13
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=76.95 E-value=7.2 Score=34.54 Aligned_cols=88 Identities=16% Similarity=0.300 Sum_probs=55.8
Q ss_pred ccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCHHHHHHHh----cCCCeEEEccCcchhhHhhhccccceeeeecce
Q psy3767 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLL----KESNLILLCGRYQAIDQRFLDNFIDEEISVGDF 136 (246)
Q Consensus 61 vm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~a~~La----~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDy 136 (246)
|=-..-+.++++..+ ..+ +++.||--|..... ...++. +++++.+|-| =||+..=+++ ..|--+++|||
T Consensus 60 v~~~~s~~~~i~~~k-~~G---~vvhLtmyga~~~~-~~~~ir~~~~~~~p~LIvvG-g~gvp~evye-~aDynlgvg~q 132 (176)
T PRK03958 60 VEVTKSWKKEIREWK-DGG---IVVHLTMYGENIQD-VEPEIREAHRKGEPLLIVVG-AEKVPREVYE-LADWNVAVGNQ 132 (176)
T ss_pred EEEcCCHHHHHHHHH-hCC---cEEEEEEecCCccc-hHHHHHHhhccCCcEEEEEc-CCCCCHHHHh-hCCEEeccCCC
Confidence 444456778888886 322 45555555554443 333332 3567888899 9999999998 66777777777
Q ss_pred eecCCchhHHHHHHHHHHhcccc
Q psy3767 137 ILSGGELPAMMLIDAIVRLLPKV 159 (246)
Q Consensus 137 VLsGGElaAmvliDav~RliPGv 159 (246)
== -|.||++|+ .=||+.|-
T Consensus 133 pH--SvrAAlAI~--LDRL~~g~ 151 (176)
T PRK03958 133 PH--SEVAALAVF--LDRLFEGK 151 (176)
T ss_pred Ch--HHHHHHHHH--HHHhcCCc
Confidence 55 466666554 23776653
No 14
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=73.28 E-value=4.7 Score=36.95 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=42.2
Q ss_pred CcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecC
Q psy3767 82 PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSG 140 (246)
Q Consensus 82 ~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsG 140 (246)
..+|.|+|.|.+...+.-.+...+.-.|+|-|-=+| |.|.-..++++.+|||||=||-
T Consensus 148 ~~~ill~e~G~~~~p~~~~~~l~~~i~v~iG~fp~G-df~~~~~~~~~~~si~~~pL~a 205 (223)
T COG1756 148 KVTILLHEKGELIPPKELISLLLKGIAVIIGGFPHG-DFREETEFVAEKYSIYDEPLSA 205 (223)
T ss_pred ceEEEEcCCCCccCHHHHHhhhccCceEEEeccCCC-cchhhhhhhcceeeecCCCccH
Confidence 369999999999998877777765524444444445 4444455788999999998874
No 15
>KOG3073|consensus
Probab=71.71 E-value=3.1 Score=38.13 Aligned_cols=56 Identities=21% Similarity=0.471 Sum_probs=43.2
Q ss_pred CCcEEEeCCCCCccC--HHHHHHHhcCCCeEEEccCc-chhhHhhhccccceeeeecceeec
Q psy3767 81 IPKIIYMSPQGKKLT--HNIIIKLLKESNLILLCGRY-QAIDQRFLDNFIDEEISVGDFILS 139 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~--Q~~a~~La~~~~lvliCGrY-EGiDeRv~~~~vdeeiSIGDyVLs 139 (246)
+.+-|-||+.|..++ |.....+-..+.++|+-|-. +| .+-..|+||.+||-||=||
T Consensus 159 ~~~Ki~lSf~~p~l~~~~~lv~~~~~~~~~v~~Iga~ahg---~~~~ey~de~vsiSnYpLS 217 (236)
T KOG3073|consen 159 NSRKIGLSFSGPKLSNVRDLVASLDDDDSVVFVIGAMAHG---KISVEYVDEKVSISNYPLS 217 (236)
T ss_pred CccEEeecCCCcccccHHhhccccCCCCCEEEEEeccccc---ccchhhhhhhcccccCcCc
Confidence 467899999999997 55555555556688877743 44 4555699999999999998
No 16
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=64.56 E-value=23 Score=31.41 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=45.4
Q ss_pred CCcEEEeCCCCCccCH---HHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchh
Q psy3767 81 IPKIIYMSPQGKKLTH---NIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELP 144 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q---~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGEla 144 (246)
+..+|.+-|.|+++++ ++++.|-..+.++++||-=|||..=+.. |+|--|-+-=+|--.=|-+
T Consensus 93 ~~~lIvtdPkG~~is~vk~~L~~~~r~~~eV~v~iGSReGiP~GlfR-fAd~VvDlaP~~t~aTe~~ 158 (173)
T PF14419_consen 93 GEPLIVTDPKGDPISEVKDKLAEDLRYAKEVVVFIGSREGIPRGLFR-FADYVVDLAPGVTFATEHA 158 (173)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhCcEEEEEEEcccCCChhHHH-HhhhhhhcCCceEEeehhh
Confidence 3468999999999986 3444455567999999999999987764 7666665555555444443
No 17
>PRK02135 hypothetical protein; Provisional
Probab=51.40 E-value=28 Score=31.47 Aligned_cols=92 Identities=15% Similarity=0.317 Sum_probs=65.8
Q ss_pred hhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCHHH
Q psy3767 19 SGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNI 98 (246)
Q Consensus 19 ~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~ 98 (246)
-+.++||++.+. + ..-..+-.--||.-.+-.-+.+.|+.+. . +..++||-..|+.+.
T Consensus 84 a~~I~kAL~~~~-------------~---~~~~~~~e~~pGi~V~~~~fe~ll~~~~-e---~~~l~~L~e~G~~i~--- 140 (201)
T PRK02135 84 AALIKKALDASE-------------G---MIGEQEREVTPGIYVRRRGFEDLLEELA-E---GKTLYYLHEDGEDIR--- 140 (201)
T ss_pred HHHHHHHHhccc-------------c---cccccccccCCCEEEecCCHHHHHHHHh-c---CCcEEEEeCCCCchh---
Confidence 467889987663 0 1111222334899999888888888872 2 357999999999887
Q ss_pred HHHHhcCCCeEEEccCcchh---hHhhhccccceeeeecc
Q psy3767 99 IIKLLKESNLILLCGRYQAI---DQRFLDNFIDEEISVGD 135 (246)
Q Consensus 99 a~~La~~~~lvliCGrYEGi---DeRv~~~~vdeeiSIGD 135 (246)
+..-.++-+||-|--.|+ +++.++.+.++-||+|=
T Consensus 141 --~~~~~~~~~FvLgDH~~~~~ee~~~L~~~ga~~iSlGP 178 (201)
T PRK02135 141 --DVEFPENPVFVLGDHIGFTEEEENLLKRLGAEKISLGP 178 (201)
T ss_pred --hccCCCCCEEEEeCCCCCCHHHHHHHHHhCCeEEEeCc
Confidence 222235667999998998 66777877889999983
No 18
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=50.95 E-value=41 Score=33.32 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=52.7
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccC-------HHHHHHHhc--CCCeEEEccCcchhhHhh
Q psy3767 52 YPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLT-------HNIIIKLLK--ESNLILLCGRYQAIDQRF 122 (246)
Q Consensus 52 ~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~-------Q~~a~~La~--~~~lvliCGrYEGiDeRv 122 (246)
.|... |.++.-.=|.+++--++....++++||++|=+|+|=. ...|+.|++ ..++.|++ . .|++-+
T Consensus 25 vP~~d--G~I~dd~RI~a~lpTIk~l~~~ga~Vvl~SHlGRPk~~~~~~SL~pva~~Ls~ll~~~V~f~~-d--~~g~~a 99 (395)
T COG0126 25 VPVDD--GKITDDTRIRAALPTIKYLLEKGAKVVLLSHLGRPKEYSDKTSLEPVAKRLSELLGKEVKFVD-D--CVGPEA 99 (395)
T ss_pred CcccC--CeeCCcHHHHHhhHHHHHHHhCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHhcCCceEecc-c--ccCHHH
Confidence 35555 8899988899888777654334567999999999965 456788876 35677766 3 333433
Q ss_pred hccccceeeeecceee
Q psy3767 123 LDNFIDEEISVGDFIL 138 (246)
Q Consensus 123 ~~~~vdeeiSIGDyVL 138 (246)
.+ .-.++.=||.+|
T Consensus 100 ~~--~v~~l~~GevlL 113 (395)
T COG0126 100 RQ--AVAELKDGEVLL 113 (395)
T ss_pred HH--HHhccCCCcEEE
Confidence 22 223445555555
No 19
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=45.99 E-value=78 Score=29.87 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=45.2
Q ss_pred HHHHHcCC--eEEEEEc---cCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCC
Q psy3767 23 RRAFEKKQ--YSLNLWN---PRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQ 90 (246)
Q Consensus 23 ~rA~~~g~--~~i~~~n---~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~ 90 (246)
.||.+.|. |+|+.-+ +.+|-....++.+|. |||. +.=+..-+.+.|+++++..+..+-.+=+|+.
T Consensus 159 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~-yGGs--lenR~rf~~eii~air~~vg~d~v~vRis~~ 228 (338)
T cd02933 159 RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDE-YGGS--IENRARFLLEVVDAVAEAIGADRVGIRLSPF 228 (338)
T ss_pred HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCc-CCCc--HHHhhhHHHHHHHHHHHHhCCCceEEEECcc
Confidence 57888774 6666444 778888877778887 8875 7788899999999997653323322336654
No 20
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=44.38 E-value=50 Score=28.97 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEeCCCCCccC-------HHHHHHHhcC-CCeEEEccC---cchhhHhhhccccceeeee
Q psy3767 65 KPIEDTITAIKKNIKKIPKIIYMSPQGKKLT-------HNIIIKLLKE-SNLILLCGR---YQAIDQRFLDNFIDEEISV 133 (246)
Q Consensus 65 ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~-------Q~~a~~La~~-~~lvliCGr---YEGiDeRv~~~~vdeeiSI 133 (246)
+-+.+.++.+++. ...||.++=+|.-.+ ++.|++|+.. -++ +|+|| ..++ |.+-..+| -.|+
T Consensus 160 ~~i~~~i~~lr~~---~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~Dv-IiG~H~H~~~~~-e~~~~~~I--~Ysl 232 (239)
T smart00854 160 EKILADIARARKK---ADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADV-VIGHHPHVLQPI-EIYKGKLI--AYSL 232 (239)
T ss_pred HHHHHHHHHHhcc---CCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCE-EEcCCCCcCCce-EEECCEEE--EEcc
Confidence 4455555555532 346888889997664 4788888653 455 44777 3333 22222233 5799
Q ss_pred cceee
Q psy3767 134 GDFIL 138 (246)
Q Consensus 134 GDyVL 138 (246)
|+||-
T Consensus 233 GNfi~ 237 (239)
T smart00854 233 GNFIF 237 (239)
T ss_pred ccccc
Confidence 99873
No 21
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=41.89 E-value=55 Score=31.89 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=37.0
Q ss_pred CcccccHHHHHHHHHHHhhcCCCCcEEEeC----CCCCccCHHHHHHHh---cCCCeEEEc
Q psy3767 59 GMIMLGKPIEDTITAIKKNIKKIPKIIYMS----PQGKKLTHNIIIKLL---KESNLILLC 112 (246)
Q Consensus 59 GMvm~~ePi~~al~~~~~~~~~~~~vI~ls----P~G~~~~Q~~a~~La---~~~~lvliC 112 (246)
|+.+.++-+.++++...+. +.++++||+| |.|..++.+..++|. ++.++.+|+
T Consensus 170 ~~~~~~~~le~~~~~~~~~-~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~ 229 (468)
T PLN02450 170 GFQITESALEEAYQQAQKL-NLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLIS 229 (468)
T ss_pred CCcCCHHHHHHHHHHHHhc-CCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 4556667777777665332 2246788888 899999999888774 356777764
No 22
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=41.32 E-value=7.8 Score=30.58 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=17.4
Q ss_pred chhhHhhhccccceeeeecceeec
Q psy3767 116 QAIDQRFLDNFIDEEISVGDFILS 139 (246)
Q Consensus 116 EGiDeRv~~~~vdeeiSIGDyVLs 139 (246)
-||-+-|-=.++++++.+|||||-
T Consensus 24 gGvkreV~l~Lv~~~v~~GdyVLV 47 (82)
T COG0298 24 GGVKREVNLDLVGEEVKVGDYVLV 47 (82)
T ss_pred ccEeEEEEeeeecCccccCCEEEE
Confidence 345445544578889999999994
No 23
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=40.09 E-value=45 Score=30.09 Aligned_cols=72 Identities=15% Similarity=0.292 Sum_probs=49.9
Q ss_pred CCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCHHHHHHHhcCC-CeEEEccCcchh---hHhhhccccceeee
Q psy3767 57 GVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKES-NLILLCGRYQAI---DQRFLDNFIDEEIS 132 (246)
Q Consensus 57 G~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~a~~La~~~-~lvliCGrYEGi---DeRv~~~~vdeeiS 132 (246)
-||.-.+-.=+.+.++.+.. ...++||-..|+.+....- .. +-+||-|=-.|+ ||.+++.+.++-||
T Consensus 105 ~pGi~v~~~~fe~ll~~~~~----~~~l~~L~e~G~di~~~~~-----~~~d~~FVLgDH~g~~~eee~~L~~~~a~kiS 175 (199)
T PF04013_consen 105 TPGIYVRKGGFEDLLEELAE----EYPLYYLHEDGEDIRDVEF-----PGNDPVFVLGDHIGFTEEEEELLERLGAEKIS 175 (199)
T ss_dssp ETTEEEE---HHHHHHHHHC----TSEEEEESTTSEEGGGS--------S-SEEEEEE-TT-SHHHHHHHHHCTTSEEEE
T ss_pred CCCEEEecCCHHHHHHHHhc----CCcEEEEcCCCCcHhhccc-----CCCCCeEEEeCCCCCCHHHHHHHHHccCceEE
Confidence 37888888888888887754 2579999999998865332 23 789999999999 57788878889999
Q ss_pred eccee
Q psy3767 133 VGDFI 137 (246)
Q Consensus 133 IGDyV 137 (246)
+|=-.
T Consensus 176 lGP~~ 180 (199)
T PF04013_consen 176 LGPKS 180 (199)
T ss_dssp S-SS-
T ss_pred eCCHH
Confidence 99543
No 24
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=38.65 E-value=8.9 Score=30.46 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=20.2
Q ss_pred cchhhHhhhccccce-----eeeecceeecCCchh
Q psy3767 115 YQAIDQRFLDNFIDE-----EISVGDFILSGGELP 144 (246)
Q Consensus 115 YEGiDeRv~~~~vde-----eiSIGDyVLsGGEla 144 (246)
+-|+=.+|--.++++ ++++|||||.---.|
T Consensus 21 ~~Gv~reV~l~Lv~~~~~~~~~~vGDyVLVHaGfA 55 (90)
T PRK10409 21 VCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFA 55 (90)
T ss_pred cCCeEEEEEEeeecccCCCCccCCCCEEEEecChH
Confidence 446655655556653 799999999765443
No 25
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=38.34 E-value=83 Score=30.55 Aligned_cols=51 Identities=10% Similarity=0.240 Sum_probs=36.2
Q ss_pred ccccHHHHHHHHHHHhhcCCCCcEEEe----CCCCCccCHHHHHHH---hcCCCeEEEc
Q psy3767 61 IMLGKPIEDTITAIKKNIKKIPKIIYM----SPQGKKLTHNIIIKL---LKESNLILLC 112 (246)
Q Consensus 61 vm~~ePi~~al~~~~~~~~~~~~vI~l----sP~G~~~~Q~~a~~L---a~~~~lvliC 112 (246)
-+.++-+.++++.+... +.+.+.|++ .|-|..++++..++| +++.++.+||
T Consensus 181 ~~~~~~le~a~~~a~~~-~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 181 QVTPQALEAAYQEAEAA-NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVS 238 (447)
T ss_pred cCCHHHHHHHHHHHHHh-CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 36777788888776543 224566777 589999999887776 4566788876
No 26
>PLN02282 phosphoglycerate kinase
Probab=37.49 E-value=80 Score=31.26 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=51.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCcc--C-----HHHHHHHhc--CCCeEEEccCcchhhHhh
Q psy3767 52 YPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKL--T-----HNIIIKLLK--ESNLILLCGRYQAIDQRF 122 (246)
Q Consensus 52 ~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~--~-----Q~~a~~La~--~~~lvliCGrYEGiDeRv 122 (246)
.|..- .|.++...=|.+++.-++....++++||++|-+|+|- + ...|+.|++ ..++.|+ -..-| +.+
T Consensus 28 vPi~~-~g~I~dd~RI~a~lpTI~~l~~~gakvVl~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv-~d~~g--~~~ 103 (401)
T PLN02282 28 VPLDD-NSNITDDTRIRAAVPTIKYLMGHGARVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMA-NDCIG--EEV 103 (401)
T ss_pred CccCC-CCcccCcHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCcccCHHHHHHHHHHHHCCCeEEC-CCCCC--HHH
Confidence 46631 2678888888888877765433368999999999983 3 566777877 3567665 22222 333
Q ss_pred hccccceeeeecceee
Q psy3767 123 LDNFIDEEISVGDFIL 138 (246)
Q Consensus 123 ~~~~vdeeiSIGDyVL 138 (246)
.+ .-+++.-||.+|
T Consensus 104 ~~--~i~~l~~G~ilL 117 (401)
T PLN02282 104 EK--LVAELPEGGVLL 117 (401)
T ss_pred HH--HHhcCCCCCEEE
Confidence 22 233556777766
No 27
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=36.83 E-value=1.9e+02 Score=21.96 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=53.1
Q ss_pred HHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCC-CCCcc
Q psy3767 16 ITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSP-QGKKL 94 (246)
Q Consensus 16 ~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP-~G~~~ 94 (246)
++....+..++++.=+++.++|..--. .+..+.+.+. ++.+|.+|= .+-.+
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~~~~-------------------------~~l~~~~~~~---~pd~V~iS~~~~~~~ 65 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDANVPP-------------------------EELVEALRAE---RPDVVGISVSMTPNL 65 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESSB-H-------------------------HHHHHHHHHT---TCSEEEEEESSSTHH
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCCCH-------------------------HHHHHHHhcC---CCcEEEEEccCcCcH
Confidence 467888888888855688877653311 3333334333 467777754 33222
Q ss_pred --CHHHHHHHhc-CCC-eEEEccCc-chhhHhhhccccceeeeec-ceeecC-CchhHH
Q psy3767 95 --THNIIIKLLK-ESN-LILLCGRY-QAIDQRFLDNFIDEEISVG-DFILSG-GELPAM 146 (246)
Q Consensus 95 --~Q~~a~~La~-~~~-lvliCGrY-EGiDeRv~~~~vdeeiSIG-DyVLsG-GElaAm 146 (246)
..+.++.+.+ .++ .+++-|-+ .-..+++++.+ .| |||+.| ||.+-.
T Consensus 66 ~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~------~~~D~vv~GegE~~~~ 118 (121)
T PF02310_consen 66 PEAKRLARAIKERNPNIPIVVGGPHATADPEEILREY------PGIDYVVRGEGEEAFP 118 (121)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHH------HTSEEEEEETTSSHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccC------cCcceecCCChHHhhc
Confidence 2334444333 234 55666644 56667766532 45 775554 776543
No 28
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=35.78 E-value=62 Score=30.07 Aligned_cols=135 Identities=19% Similarity=0.326 Sum_probs=95.6
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHc-CCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEK-KQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIK 79 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~-g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~ 79 (246)
|++.|+-.-|+.=. +-|-+.||.+. |+=++.+||+|+--. -+-+-+-.|+.=|+...-|++.++++-..
T Consensus 3 ~~i~iVLVep~~~g---NIG~vARaMKNfGl~eL~LV~Pr~~~~-----eeA~a~A~gA~dile~A~i~~tL~eAl~d-- 72 (242)
T COG0565 3 ENIRIVLVEPSHPG---NIGSVARAMKNFGLSELRLVNPRAGLD-----EEARALAAGARDILENAKIVDTLEEALAD-- 72 (242)
T ss_pred CccEEEEEcCCCCc---cHHHHHHHHHhCCcceEEEECCCCCCC-----HHHHHHhccchhhhccCeeecCHHHHhcC--
Confidence 56788888898765 66999999986 899999999999711 12233567888899988889999877543
Q ss_pred CCCcEEEeCCCCC------ccCHHHHHHHhcC---CCeEEEccCcchhhHhhhccccceeeeecceeec---CCchhHHH
Q psy3767 80 KIPKIIYMSPQGK------KLTHNIIIKLLKE---SNLILLCGRYQAIDQRFLDNFIDEEISVGDFILS---GGELPAMM 147 (246)
Q Consensus 80 ~~~~vI~lsP~G~------~~~Q~~a~~La~~---~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLs---GGElaAmv 147 (246)
-..||-+|-.-+ ..-.+.+..|..+ .++-+|-|| ||. -+-.|||-.=||+++ .-+.|.|=
T Consensus 73 -~~~v~aTtar~r~~~~~~~~P~e~~~~l~~~~~~~~vAlvFGR-----E~~--GLtNeEl~~c~~~v~IP~~p~Y~sLN 144 (242)
T COG0565 73 -CDLVVATTARSRDLLRPLRTPREAAPELLEKAKGGKVALVFGR-----ERV--GLTNEELALCDVLVTIPANPDYPSLN 144 (242)
T ss_pred -CCEEEEeccccCcccccccCHHHHHHHHHHHhcCCCeEEEECC-----ccC--CCCHHHHHhhhEEEecCCCCcccccc
Confidence 134666663222 1223455566554 689999998 554 477899999999886 56766666
Q ss_pred HHHHHH
Q psy3767 148 LIDAIV 153 (246)
Q Consensus 148 liDav~ 153 (246)
+.=||.
T Consensus 145 La~AV~ 150 (242)
T COG0565 145 LAQAVQ 150 (242)
T ss_pred HHHHHH
Confidence 666654
No 29
>KOG4031|consensus
Probab=35.48 E-value=81 Score=28.98 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=18.6
Q ss_pred CCCCccccCCchHHHHHHHHHHHHHH
Q psy3767 189 MEVPIVLLSGNHKKIKKWKRKNSLKI 214 (246)
Q Consensus 189 ~~VPeVLlSGnH~kI~~WR~~~sl~~ 214 (246)
...|. +++.-.+|++||.+|..+.
T Consensus 96 s~~~~--~~~epE~IRkWkeeQ~~rl 119 (216)
T KOG4031|consen 96 SQGPR--LRDEPEKIRKWKEEQMKRL 119 (216)
T ss_pred CCCCC--cccChHHHHHHHHHHHHHH
Confidence 34444 8999999999999987553
No 30
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=33.15 E-value=71 Score=31.11 Aligned_cols=37 Identities=16% Similarity=0.433 Sum_probs=28.0
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhc-CCCeEEEccCcchhh
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLK-ESNLILLCGRYQAID 119 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~-~~~lvliCGrYEGiD 119 (246)
++.|+ .||+|. +|.+.-.|+++ .+++|+|-|-=-.|-
T Consensus 52 NA~Vl-ttpwg~-ynes~~~eI~~lnpd~VLIIGGp~AVs 89 (337)
T COG2247 52 NAPVL-TTPWGI-YNESVLDEIIELNPDLVLIIGGPIAVS 89 (337)
T ss_pred CCeeE-ecCccc-ccHHHHHHHHhhCCceEEEECCCCcCC
Confidence 45688 999987 89999999877 567888887544433
No 31
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=32.08 E-value=3.7e+02 Score=26.59 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=60.6
Q ss_pred HHHhhhHHHHHH-HcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCc
Q psy3767 15 AITQSGITRRAF-EKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKK 93 (246)
Q Consensus 15 ~~~~~si~~rA~-~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~ 93 (246)
.++....++-++ +.|..+++++|... ++ + +..+..+.+.+. .|.+|.+|-- .
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~---------~~----------~---~~~~~~~~l~~~---~pdvVgis~~--t 73 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMT---------GP----------L---TDEKLVERLRAH---CPDLVLITAI--T 73 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccc---------cC----------C---CHHHHHHHHHhc---CcCEEEEecC--c
Confidence 356666777666 45656899998641 11 1 112223333332 4678877743 3
Q ss_pred cCHHHHHHHhc-----CCCe-EEEccC-cchhhHhhhccccceeeeecceeecC-CchhHHHHHHHHH
Q psy3767 94 LTHNIIIKLLK-----ESNL-ILLCGR-YQAIDQRFLDNFIDEEISVGDFILSG-GELPAMMLIDAIV 153 (246)
Q Consensus 94 ~~Q~~a~~La~-----~~~l-vliCGr-YEGiDeRv~~~~vdeeiSIGDyVLsG-GElaAmvliDav~ 153 (246)
-+...|.++++ .++. |++-|. ..-..+.+++.+ .--|||+.| ||.+..-+++++.
T Consensus 74 ~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~-----p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 74 PAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEA-----PWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred ccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcC-----CCccEEEeCCcHHHHHHHHHHHH
Confidence 34555666643 2344 455554 344455555421 234887777 8999888998864
No 32
>KOG3638|consensus
Probab=30.74 E-value=19 Score=35.18 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=13.2
Q ss_pred eeeeecceeecCCchh
Q psy3767 129 EEISVGDFILSGGELP 144 (246)
Q Consensus 129 eeiSIGDyVLsGGEla 144 (246)
.|++||||||+-.+.+
T Consensus 226 ~el~iGD~Vla~~~~~ 241 (414)
T KOG3638|consen 226 DELSIGDYVLAADQGG 241 (414)
T ss_pred CCCCCCCeeeccccCC
Confidence 4899999999988633
No 33
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=30.72 E-value=1.4e+02 Score=23.87 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=64.2
Q ss_pred HHhhhH-HHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcc-----cccHHHHHHHHHHHhhcCCCCcEEEeCC
Q psy3767 16 ITQSGI-TRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMI-----MLGKPIEDTITAIKKNIKKIPKIIYMSP 89 (246)
Q Consensus 16 ~~~~si-~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMv-----m~~ePi~~al~~~~~~~~~~~~vI~lsP 89 (246)
+.+.|- +.-|-.-|.=.+.+++.+.+.....+... .+.|-. -..+-+.++++.++.. +-.++-+++
T Consensus 12 p~NlG~i~Rta~afG~~~v~l~~~~~~~~~~~~~~r-----~s~g~~~~~~~~~~~~~~~~l~~~~~~---g~~i~~~~~ 83 (142)
T PF00588_consen 12 PGNLGAIIRTAAAFGVDGVILVGPRCADPYNPKVLR-----ASAGAHEHLPIRRVDDLEEALKDLKEN---GYTIVATSP 83 (142)
T ss_dssp HHHHHHHHHHHHHTTESEEEEESSSSSTTTSHHHHH-----HTTTGHHCSHEEEESSHHHHHHHHHHT---TEEEEEEST
T ss_pred cCcHHHHHHHHHHhCCchhheecccccccccccccc-----ccCChhhhhheeeeehhhhhccccccc---ccccceeee
Confidence 344444 44455567779999998877333221111 122222 2234567788877653 357889999
Q ss_pred CCCccCHHHHHHHhcCCCeEEEccC-cchhhHhhhccccceeeeec
Q psy3767 90 QGKKLTHNIIIKLLKESNLILLCGR-YQAIDQRFLDNFIDEEISVG 134 (246)
Q Consensus 90 ~G~~~~Q~~a~~La~~~~lvliCGr-YEGiDeRv~~~~vdeeiSIG 134 (246)
+|+.+.+ +.-.++++||-|+ =.|+.+-+++ ..|.-++|-
T Consensus 84 ~~~~~~~-----~~~~~~~~lv~G~E~~Gls~~~~~-~~d~~v~IP 123 (142)
T PF00588_consen 84 GATPLYE-----LDFPKKVALVFGNESRGLSEEVLE-LCDHRVSIP 123 (142)
T ss_dssp TSCEGGG-----SHTTSSEEEEEEBTTTBS-HHHHH-TSSEEEE--
T ss_pred ccccccc-----cccccceEEEEcCcCCCCCccccc-ccceEEEEc
Confidence 8888873 2334677777776 4899999998 678878774
No 34
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=30.05 E-value=1.7e+02 Score=26.33 Aligned_cols=64 Identities=16% Similarity=0.314 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHHHhhcCCCCcEEEeCCC--CCccCHHHHHHHh--cCCCeEEEccCcchhhHhhhcc
Q psy3767 62 MLGKPIEDTITAIKKNIKKIPKIIYMSPQ--GKKLTHNIIIKLL--KESNLILLCGRYQAIDQRFLDN 125 (246)
Q Consensus 62 m~~ePi~~al~~~~~~~~~~~~vI~lsP~--G~~~~Q~~a~~La--~~~~lvliCGrYEGiDeRv~~~ 125 (246)
=-.+-+.+|++.+.+..+++|.+|..|.+ -...+-...++.- .+..++++-|-==|+.+-+++.
T Consensus 85 ~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~lr~~l~~~~~P~LllFGTGwGL~~ev~~~ 152 (185)
T PF09936_consen 85 RVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAELRRMLEEEDRPVLLLFGTGWGLAPEVMEQ 152 (185)
T ss_dssp EEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHHHHHHHHH--S-EEEEE--TT---HHHHTT
T ss_pred ccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHHHHHHHhccCCeEEEEecCCCCCCHHHHHh
Confidence 33456788888886654667889999887 2334444445553 4566777778777988888874
No 35
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=50 Score=29.33 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=37.8
Q ss_pred eecceeecCCch----hHHHHHHHHHHhccc---ccCCCCCc-cccccCCCCCCCCCCCCCccCCCCCCc-cccCCchHH
Q psy3767 132 SVGDFILSGGEL----PAMMLIDAIVRLLPK---VLNNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPI-VLLSGNHKK 202 (246)
Q Consensus 132 SIGDyVLsGGEl----aAmvliDav~RliPG---vLg~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPe-VLlSGnH~k 202 (246)
..--.+|||||. ....+++.+-|. | .+...-++ ...|.. +-+-=.++.| ...+++--. +|..||..+
T Consensus 71 ~~~~V~lTGGEP~~~~~l~~Ll~~l~~~--g~~~~lETngti~~~~~~~-~d~l~~~~~~-~~~~~~~~~~~l~~~~~~~ 146 (212)
T COG0602 71 KARGVSLTGGEPLLQPNLLELLELLKRL--GFRIALETNGTIPVWTGYT-IDELTVSPKS-DKSLLSAIDEVLVDGDFIK 146 (212)
T ss_pred CcceEEEeCCcCCCcccHHHHHHHHHhC--CceEEecCCCCcccccccc-hHhHhccccc-ccccccchhhhhcchHHHH
Confidence 334569999999 467788888775 4 23333444 444332 2222334444 333333333 788888776
Q ss_pred H
Q psy3767 203 I 203 (246)
Q Consensus 203 I 203 (246)
.
T Consensus 147 ~ 147 (212)
T COG0602 147 F 147 (212)
T ss_pred H
Confidence 4
No 36
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=29.90 E-value=14 Score=28.30 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=20.3
Q ss_pred CcchhhHhhhccccceeeeecceeecCCch
Q psy3767 114 RYQAIDQRFLDNFIDEEISVGDFILSGGEL 143 (246)
Q Consensus 114 rYEGiDeRv~~~~vdeeiSIGDyVLsGGEl 143 (246)
.+.|+=.+|--.++ .++++|||||.---.
T Consensus 20 ~~~G~~~~v~l~lv-~~~~vGD~VLVH~G~ 48 (76)
T TIGR00074 20 EFCGIKRDVSLDLV-GEVKVGDYVLVHVGF 48 (76)
T ss_pred EcCCeEEEEEEEee-CCCCCCCEEEEecCh
Confidence 45676666655566 589999999975443
No 37
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=29.77 E-value=3.9e+02 Score=24.83 Aligned_cols=114 Identities=17% Similarity=0.295 Sum_probs=60.4
Q ss_pred hhhHHHHHHHcCCeEEE-EEccC--CCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEE--eCCCCC
Q psy3767 18 QSGITRRAFEKKQYSLN-LWNPR--NFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIY--MSPQGK 92 (246)
Q Consensus 18 ~~si~~rA~~~g~~~i~-~~n~R--df~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~--lsP~G~ 92 (246)
+.|.++.|.+.--+.++ .+-|| ||..+.. -.+-+.+-|+.+++. + -.-|+| |||.|.
T Consensus 39 S~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~----------------E~~~M~~di~~~~~~-G-adGvV~G~L~~dg~ 100 (248)
T PRK11572 39 SLGVLKSVRERVTIPVHPIIRPRGGDFCYSDG----------------EFAAMLEDIATVREL-G-FPGLVTGVLDVDGH 100 (248)
T ss_pred CHHHHHHHHHhcCCCeEEEEecCCCCCCCCHH----------------HHHHHHHHHHHHHHc-C-CCEEEEeeECCCCC
Confidence 46788888876444544 56777 6655541 123334445555443 2 123555 999997
Q ss_pred ccCHHHHHHHh---cCCCeEEEccCcchhhHhh--hccccceeeeec-ceeecCC-chhHHHHHHHHHHh
Q psy3767 93 KLTHNIIIKLL---KESNLILLCGRYQAIDQRF--LDNFIDEEISVG-DFILSGG-ELPAMMLIDAIVRL 155 (246)
Q Consensus 93 ~~~Q~~a~~La---~~~~lvliCGrYEGiDeRv--~~~~vdeeiSIG-DyVLsGG-ElaAmvliDav~Rl 155 (246)
+|.+..++|. ..-.++| | ..||+=- .+ -.+.-+.+| |-|||.| ...|.-=+|-+.+|
T Consensus 101 -vD~~~~~~Li~~a~~~~vTF---H-RAfD~~~d~~~-al~~l~~lG~~rILTSGg~~~a~~g~~~L~~l 164 (248)
T PRK11572 101 -VDMPRMRKIMAAAGPLAVTF---H-RAFDMCANPLN-ALKQLADLGVARILTSGQQQDAEQGLSLIMEL 164 (248)
T ss_pred -cCHHHHHHHHHHhcCCceEE---e-chhhccCCHHH-HHHHHHHcCCCEEECCCCCCCHHHHHHHHHHH
Confidence 7888777773 3445666 3 1222200 00 122334456 5788755 44455444444444
No 38
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=29.10 E-value=1.1e+02 Score=29.48 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=24.0
Q ss_pred CCcEEEe----CCCCCccCHHHHHHHhcCCCeEEEc
Q psy3767 81 IPKIIYM----SPQGKKLTHNIIIKLLKESNLILLC 112 (246)
Q Consensus 81 ~~~vI~l----sP~G~~~~Q~~a~~La~~~~lvliC 112 (246)
++++||+ .|.|...+-+...+++++.++++|+
T Consensus 145 ~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIv 180 (405)
T PRK08776 145 SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVV 180 (405)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEE
Confidence 4677775 5789999988888888876655554
No 39
>COG4270 Predicted membrane protein [Function unknown]
Probab=28.20 E-value=16 Score=30.87 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=23.5
Q ss_pred CCCCCCCccCCCCCC-------ccccCCchH-------HHHHHHHHHH
Q psy3767 178 SYYTKPRIYLNMEVP-------IVLLSGNHK-------KIKKWKRKNS 211 (246)
Q Consensus 178 P~YTRP~~~~G~~VP-------eVLlSGnH~-------kI~~WR~~~s 211 (246)
=|||||+.|++.-=| .|+.||--+ -|-.||+..+
T Consensus 23 ~HF~r~eqf~~IVPp~vP~p~tav~VSG~fEilgglaLlip~~s~~aa 70 (131)
T COG4270 23 GHFTRPEQFRRIVPPCVPLPKTAVLVSGIFEILGGLALLIPAPSQAAA 70 (131)
T ss_pred hhccchhhhcccCCCCCCcchhHHHHHHHHHHHhhhhhhcCCcHHHHH
Confidence 489999999987544 477887654 3456666544
No 40
>COG3874 Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=19 Score=30.84 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=24.9
Q ss_pred cCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCcc
Q psy3767 49 IDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKL 94 (246)
Q Consensus 49 VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~ 94 (246)
.-+.|||||+|-=.+.+|++=-+ ++. ...+++-++-.|..+
T Consensus 59 t~~~g~GGG~GaGa~I~PiAflv--l~~---d~vrml~l~~~g~~~ 99 (138)
T COG3874 59 TGEKGFGGGAGAGASIEPIAFLV--LKS---DGVRMLPLDEKGHLL 99 (138)
T ss_pred cCcCCCCCCCCCccccceeEEEE--Eec---CCEEEEEecccccHH
Confidence 34569999999888888874322 111 134566666555443
No 41
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=27.91 E-value=17 Score=27.11 Aligned_cols=26 Identities=15% Similarity=0.482 Sum_probs=17.1
Q ss_pred CcchhhHhhhccccceeeeecceeecC
Q psy3767 114 RYQAIDQRFLDNFIDEEISVGDFILSG 140 (246)
Q Consensus 114 rYEGiDeRv~~~~vdeeiSIGDyVLsG 140 (246)
.|.|.-.+|--.++++ +.+|||||.-
T Consensus 22 ~~~G~~~~V~~~lv~~-v~~Gd~VLVH 47 (68)
T PF01455_consen 22 DFGGVRREVSLALVPD-VKVGDYVLVH 47 (68)
T ss_dssp EETTEEEEEEGTTCTS-B-TT-EEEEE
T ss_pred EcCCcEEEEEEEEeCC-CCCCCEEEEe
Confidence 4667777765556665 9999999964
No 42
>PRK08064 cystathionine beta-lyase; Provisional
Probab=27.86 E-value=84 Score=29.78 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=23.2
Q ss_pred CCcEEEe---C-CCCCccCHHHHHHHhcCCCeEEEc
Q psy3767 81 IPKIIYM---S-PQGKKLTHNIIIKLLKESNLILLC 112 (246)
Q Consensus 81 ~~~vI~l---s-P~G~~~~Q~~a~~La~~~~lvliC 112 (246)
++++|++ + |-|...+-+...+++++..+++|+
T Consensus 138 ~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvv 173 (390)
T PRK08064 138 NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFV 173 (390)
T ss_pred CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEE
Confidence 4577773 2 689999988888888876655543
No 43
>PRK01207 methionine synthase; Provisional
Probab=27.42 E-value=53 Score=31.70 Aligned_cols=86 Identities=21% Similarity=0.191 Sum_probs=59.9
Q ss_pred cCcchhhHhhhccccceeeeec-ceeecCCchhHHHHHHHHHHhcccccCCCCCccccccCCCCCCCCCCCCCccCCCCC
Q psy3767 113 GRYQAIDQRFLDNFIDEEISVG-DFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRIYLNMEV 191 (246)
Q Consensus 113 GrYEGiDeRv~~~~vdeeiSIG-DyVLsGGElaAmvliDav~RliPGvLg~~~S~~eSF~~gLLe~P~YTRP~~~~G~~V 191 (246)
.-||-+++-+ ...+....++| |+|++.||.---=|++-.++.++|+-- ...-.||.|. .|.+|..+.-.+-
T Consensus 30 ~~~e~~~~ai-~~~v~~Qe~aGlDiv~~dGe~~R~dmv~~f~~~l~G~~~--~g~vr~y~~~-----~~r~Pii~g~i~~ 101 (343)
T PRK01207 30 KFYELAERAT-LETLDVFENAGLDNIGIGGEMFRWEMYEHPAERIKGIIF--YGMVRSFDNR-----YYRKGSIIDRMER 101 (343)
T ss_pred HHHHHHHHHH-HHHHHHHHHcCCCEEeeCCcEeechHHHHHHHhcCCeEe--cCeEEEeccc-----cccCCeEEeeccC
Confidence 3566677744 44677788888 888899999666699999999999863 2336777663 3666666655555
Q ss_pred CccccCCchHHHHHHHHHHHH
Q psy3767 192 PIVLLSGNHKKIKKWKRKNSL 212 (246)
Q Consensus 192 PeVLlSGnH~kI~~WR~~~sl 212 (246)
|+-+ -++.|+..+++
T Consensus 102 ~~~~------~v~e~~~a~~~ 116 (343)
T PRK01207 102 RSSF------HLDEVEFVADN 116 (343)
T ss_pred CCCC------cHHHHHHHHHc
Confidence 4322 26778888877
No 44
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.22 E-value=2.8e+02 Score=21.97 Aligned_cols=85 Identities=12% Similarity=0.213 Sum_probs=49.2
Q ss_pred hhhHHHHHHHcCCeEEEEEccCCCC---CCCCcccCCCCCCCCCCcccccHHHH---HHHHHHHhhcCCCCcEEEeCCCC
Q psy3767 18 QSGITRRAFEKKQYSLNLWNPRNFS---SNNYRKIDDYPYGGGVGMIMLGKPIE---DTITAIKKNIKKIPKIIYMSPQG 91 (246)
Q Consensus 18 ~~si~~rA~~~g~~~i~~~n~Rdf~---~dkh~~VDD~pyGGG~GMvm~~ePi~---~al~~~~~~~~~~~~vI~lsP~G 91 (246)
.+-++..-.++| .++..+|++.=. ..-|.+++| . .+.+=++.=.-|-. ..++++.+. +.+.+.+-|.
T Consensus 16 g~~v~~~l~~~G-~~v~~Vnp~~~~i~G~~~y~sl~e-~-p~~iDlavv~~~~~~~~~~v~~~~~~---g~~~v~~~~g- 88 (116)
T PF13380_consen 16 GYRVLRNLKAAG-YEVYPVNPKGGEILGIKCYPSLAE-I-PEPIDLAVVCVPPDKVPEIVDEAAAL---GVKAVWLQPG- 88 (116)
T ss_dssp HHHHHHHHHHTT--EEEEESTTCSEETTEE-BSSGGG-C-SST-SEEEE-S-HHHHHHHHHHHHHH---T-SEEEE-TT-
T ss_pred HHHHHHHHHhCC-CEEEEECCCceEECcEEeeccccC-C-CCCCCEEEEEcCHHHHHHHHHHHHHc---CCCEEEEEcc-
Confidence 455777777777 599999999843 446788888 3 66777766555544 444444433 3455555555
Q ss_pred CccCHHHHHHHhcCCCeEEE
Q psy3767 92 KKLTHNIIIKLLKESNLILL 111 (246)
Q Consensus 92 ~~~~Q~~a~~La~~~~lvli 111 (246)
-.++.+.+++++..+-++
T Consensus 89 --~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 89 --AESEELIEAAREAGIRVI 106 (116)
T ss_dssp --S--HHHHHHHHHTT-EEE
T ss_pred --hHHHHHHHHHHHcCCEEE
Confidence 446677777777777665
No 45
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=27.14 E-value=1.9e+02 Score=27.73 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=40.3
Q ss_pred HHHHHcCC--eEEEE-E---ccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhh
Q psy3767 23 RRAFEKKQ--YSLNL-W---NPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKN 77 (246)
Q Consensus 23 ~rA~~~g~--~~i~~-~---n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~ 77 (246)
.||.+.|. |+|+. + -+-+|-....++.+|. |||. +.=++.-+.+.++++++.
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDe-yGGs--lenR~rf~~eii~~vr~~ 214 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDK-YGGS--LENRLRFAIEIVEEIKAR 214 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCc-CCCC--HHHHhHHHHHHHHHHHHh
Confidence 57888874 67775 3 4789988888888887 8763 666888889999999765
No 46
>TIGR02874 spore_ytfJ sporulation protein YtfJ. Members of this protein family, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if and only if the species is capable of endospore formation. YtfJ was confirmed in spores of Bacillus subtilis; it appears to be expressed in the forespore under control of SigF (see PubMed:12480901).
Probab=26.99 E-value=18 Score=30.42 Aligned_cols=20 Identities=40% Similarity=0.838 Sum_probs=16.2
Q ss_pred cCCCCCCCCCCcccccHHHH
Q psy3767 49 IDDYPYGGGVGMIMLGKPIE 68 (246)
Q Consensus 49 VDD~pyGGG~GMvm~~ePi~ 68 (246)
-+++|||||.|+=.+..|+.
T Consensus 64 ~~~~~fgGG~G~Gv~i~PvA 83 (125)
T TIGR02874 64 QQKYPFGGGSGAGVSVKPVA 83 (125)
T ss_pred cccCCCCCccccceEEEEEE
Confidence 45689999999888888864
No 47
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=26.85 E-value=29 Score=29.41 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=29.2
Q ss_pred CCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhcc
Q psy3767 88 SPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDN 125 (246)
Q Consensus 88 sP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~ 125 (246)
+|.+....+++++.||+.. ++++||=+.|+|+.+.+.
T Consensus 13 ~~~~~~~A~~lg~~La~~g-~~lv~Gg~~GlM~a~a~g 49 (159)
T TIGR00725 13 SEELYEIAYRLGKELAKKG-HILINGGRTGVMEAVSKG 49 (159)
T ss_pred ChHHHHHHHHHHHHHHHCC-CEEEcCCchhHHHHHHHH
Confidence 6666667777888888865 588999999999998763
No 48
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=26.79 E-value=99 Score=27.99 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=24.2
Q ss_pred CcEEEeCCCCCccCHHHHHHHhcCCCeEEEccC
Q psy3767 82 PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGR 114 (246)
Q Consensus 82 ~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGr 114 (246)
.-||.||=.|..-++++|+++. .-++ +||||
T Consensus 184 D~II~l~H~G~~~d~~la~~~~-giD~-IiggH 214 (281)
T cd07409 184 NKIIALSHSGYEVDKEIARKVP-GVDV-IVGGH 214 (281)
T ss_pred CEEEEEeccCchhHHHHHHcCC-CCcE-EEeCC
Confidence 3689999999988888888883 3455 55998
No 49
>PF13941 MutL: MutL protein
Probab=26.47 E-value=1.6e+02 Score=29.67 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=45.2
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhh-cCCCCcEEEeCCCCCccCHHHHHHHhc-CCCeEEEccCcchhhHhhhcc
Q psy3767 53 PYGGGVGMIMLGKPIEDTITAIKKN-IKKIPKIIYMSPQGKKLTHNIIIKLLK-ESNLILLCGRYQAIDQRFLDN 125 (246)
Q Consensus 53 pyGGG~GMvm~~ePi~~al~~~~~~-~~~~~~vI~lsP~G~~~~Q~~a~~La~-~~~lvliCGrYEGiDeRv~~~ 125 (246)
.=+||--||.---.=.-+.++++.. .+.+++|+. +-.| .+++...+++.+ .+++||+||=.+|=++.++-+
T Consensus 72 SAaGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~-v~s~-~l~~~~l~~i~~~~PDiILLaGGtDgG~~~~il~ 144 (457)
T PF13941_consen 72 SAAGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQ-VYSY-ELTEEDLEEIREIRPDIILLAGGTDGGNKEVILH 144 (457)
T ss_pred CCCCcceEEEEecCHHHHHHHHHHHHhcCCcEEEE-Eecc-CCCHHHHHHHhccCCCEEEEeCCccCCchHHHHH
Confidence 4588888885432222233333221 122455555 4555 578888888866 689999999999988776654
No 50
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=26.39 E-value=2e+02 Score=28.97 Aligned_cols=111 Identities=16% Similarity=0.292 Sum_probs=72.3
Q ss_pred CccccHHHHhhhHHHHHHHcC------CeEEEEEccCCCCCCCCcccC------CCCCCCCCCcccccHHHHHHHHHHHh
Q psy3767 9 FPEMFSAITQSGITRRAFEKK------QYSLNLWNPRNFSSNNYRKID------DYPYGGGVGMIMLGKPIEDTITAIKK 76 (246)
Q Consensus 9 FPe~f~~~~~~si~~rA~~~g------~~~i~~~n~Rdf~~dkh~~VD------D~pyGGG~GMvm~~ePi~~al~~~~~ 76 (246)
||+...-.+...++.+|.... +++-.++++..|...+ .++ -+-||||.=.. .|+.+|++.++.
T Consensus 288 ~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k~~--~~~e~i~fL~~~f~GGTD~~---~~l~~al~~~k~ 362 (437)
T COG2425 288 FKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELYEKKI--DIEELIEFLSYVFGGGTDIT---KALRSALEDLKS 362 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeecCCcc--CHHHHHHHHhhhcCCCCChH---HHHHHHHHHhhc
Confidence 566666777788888888776 2222344444454431 122 25699996654 789999999975
Q ss_pred hcCCCCcEEEeCCCCCccC---HHHHHHHhcC----CCeEEEccCc-chhhHhhhcc
Q psy3767 77 NIKKIPKIIYMSPQGKKLT---HNIIIKLLKE----SNLILLCGRY-QAIDQRFLDN 125 (246)
Q Consensus 77 ~~~~~~~vI~lsP~G~~~~---Q~~a~~La~~----~~lvliCGrY-EGiDeRv~~~ 125 (246)
..-.++.+|++|--=-..+ +..++++++. =+-|+|-|+- +|+. ||-++
T Consensus 363 ~~~~~adiv~ITDg~~~~~~~~~~~v~e~~k~~~~rl~aV~I~~~~~~~l~-~Isd~ 418 (437)
T COG2425 363 RELFKADIVVITDGEDERLDDFLRKVKELKKRRNARLHAVLIGGYGKPGLM-RISDH 418 (437)
T ss_pred ccccCCCEEEEeccHhhhhhHHHHHHHHHHHHhhceEEEEEecCCCCcccc-eeeee
Confidence 4222478999998766777 7778888753 2557778887 4543 55554
No 51
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=26.36 E-value=49 Score=30.72 Aligned_cols=45 Identities=16% Similarity=0.370 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCc
Q psy3767 97 NIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGE 142 (246)
Q Consensus 97 ~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGE 142 (246)
....++.+..++|++||+|+.. .+++......-+.-+|||.-+.+
T Consensus 194 ~~l~~ik~~~~vIi~~~~~~~~-~~i~~qa~~~g~~~~~y~~i~~d 238 (399)
T cd06384 194 EIIQFIKQNGRIVYICGPLETF-LEIMLQAQREGLTPGDYVFFYLD 238 (399)
T ss_pred HHHHHHhhcccEEEEeCCchHH-HHHHHHHHHcCCCCCcEEEEEeh
Confidence 3444554577999999999987 66666666777888999886544
No 52
>PRK00955 hypothetical protein; Provisional
Probab=26.26 E-value=2.9e+02 Score=29.02 Aligned_cols=120 Identities=25% Similarity=0.346 Sum_probs=62.2
Q ss_pred HHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCC-------CCCCC-CCCcccccHHHHHHHHHHHhhcCCCCcEEEe
Q psy3767 16 ITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDD-------YPYGG-GVGMIMLGKPIEDTITAIKKNIKKIPKIIYM 87 (246)
Q Consensus 16 ~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD-------~pyGG-G~GMvm~~ePi~~al~~~~~~~~~~~~vI~l 87 (246)
.+...+|+|.+++.=..+-++-=-|| +.++| .-|+| .+|=+ +-+.+...+.+..+.. =. -
T Consensus 29 ~fg~a~i~r~L~~~G~~v~ii~qp~~-----~~~~~~~~~g~P~l~~~vs~g~~---dsmv~~yt~~~~~r~~---d~-y 96 (620)
T PRK00955 29 SFGTAIIGRVLEAEGFRVGIIAQPNW-----RDLEDFKKLGKPRLFFLVSAGNM---DSMVNHYTASKKLRSK---DA-Y 96 (620)
T ss_pred ccHHHHHHHHHHHCCCEEEEecCCCc-----CChHHHHhhCCCcEEEEeccccH---HHHHhhcchhhhcccc---cc-c
Confidence 46778999999977678887733233 24555 44554 55511 2222222222221111 11 2
Q ss_pred CCCCCcc---C------HHHHHHHhcCCCe-EEEccCcchhhHhh----------hcc-ccceeeeecceeecC-CchhH
Q psy3767 88 SPQGKKL---T------HNIIIKLLKESNL-ILLCGRYQAIDQRF----------LDN-FIDEEISVGDFILSG-GELPA 145 (246)
Q Consensus 88 sP~G~~~---~------Q~~a~~La~~~~l-vliCGrYEGiDeRv----------~~~-~vdeeiSIGDyVLsG-GElaA 145 (246)
||-|+.= | -+.++++ .+++ |++.| +|-=-.|+ ... +.|. --|||+-| ||.+-
T Consensus 97 tpgg~~~~rpdra~i~y~~~ik~~--~p~~~IvlGG-~eaS~rr~~hyd~w~~~~~~siL~d~---~aD~vv~GeGE~t~ 170 (620)
T PRK00955 97 SPGGKMGLRPDRATIVYCNKIKEA--YPDVPIIIGG-IEASLRRFAHYDYWSDKVRRSILIDS---GADLLVYGMGEKPI 170 (620)
T ss_pred CCCCccCCCcchHHHHHHHHHHHH--CCCCcEEeCC-hhhhccccccchhhhhhhhHHHhhcc---CCCEEEECCcHHHH
Confidence 6776541 1 1223333 2344 44444 33333333 322 1222 35999999 99999
Q ss_pred HHHHHHHH
Q psy3767 146 MMLIDAIV 153 (246)
Q Consensus 146 mvliDav~ 153 (246)
.-|++++.
T Consensus 171 ~eL~~~L~ 178 (620)
T PRK00955 171 VEIARRLK 178 (620)
T ss_pred HHHHHHHH
Confidence 99999874
No 53
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=25.94 E-value=2.7e+02 Score=26.34 Aligned_cols=64 Identities=23% Similarity=0.147 Sum_probs=43.0
Q ss_pred HHHHHcCC--eEEEEE---ccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCC
Q psy3767 23 RRAFEKKQ--YSLNLW---NPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQ 90 (246)
Q Consensus 23 ~rA~~~g~--~~i~~~---n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~ 90 (246)
.+|.+.|. |+|+.- -+.+|-....++.+|. |||. .-=+..-+.+.|+++++..+ .+-.|=+|+.
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~-yGGs--lenR~Rf~~eii~~ir~~~~-~~v~vRis~~ 217 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDE-YGGS--PENRYRFLREIIDAVKEVWD-GPLFVRISAS 217 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCC-CCCC--HHHHHHHHHHHHHHHHHhcC-CCeEEEeccc
Confidence 67888774 666655 4778888878777777 8874 55677888888888876421 2333445653
No 54
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=25.82 E-value=1.3e+02 Score=29.31 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=43.0
Q ss_pred CCcEEEeC-CCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeeccee---------ecCCchhHHH
Q psy3767 81 IPKIIYMS-PQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFI---------LSGGELPAMM 147 (246)
Q Consensus 81 ~~~vI~ls-P~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyV---------LsGGElaAmv 147 (246)
++++|+++ +.|.+.+-+...++++..++.+|+==..++-.+.-... -=|+||+- +|.||=.+++
T Consensus 159 ~tkaVi~~~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~---~G~~gd~~~fSf~~~k~~~~geGG~l~ 232 (438)
T PRK15407 159 KTKAIMIAHTLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRM---TGTFGDIATLSFYPAHHITMGEGGAVF 232 (438)
T ss_pred CCeEEEEeCCCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCee---eeccCceEEEeCCCCCCccccCceEEE
Confidence 35666665 78999998889999998899998866666655543321 22456654 6667744333
No 55
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=25.47 E-value=2.4e+02 Score=23.99 Aligned_cols=109 Identities=13% Similarity=0.192 Sum_probs=52.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHhhcCCCC-cEEEeCCCC-CccCHHHHHHHhc-CCC--eEEEccC----cchhhHhhhc
Q psy3767 54 YGGGVGMIMLGKPIEDTITAIKKNIKKIP-KIIYMSPQG-KKLTHNIIIKLLK-ESN--LILLCGR----YQAIDQRFLD 124 (246)
Q Consensus 54 yGGG~GMvm~~ePi~~al~~~~~~~~~~~-~vI~lsP~G-~~~~Q~~a~~La~-~~~--lvliCGr----YEGiDeRv~~ 124 (246)
.+||.|+ -|+..-++++........ .++|-...- ..+=++..++|++ ..+ +++++.+ -.|--.++.+
T Consensus 104 iagG~Gi----aP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~ 179 (224)
T cd06189 104 IAGGTGF----APIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAHPNFTYVPVLSEPEEGWQGRTGLVHE 179 (224)
T ss_pred EecCcCH----HHHHHHHHHHHhcCCCCCEEEEEecCChhhccCHHHHHHHHHhCCCeEEEEEeCCCCcCCccccccHHH
Confidence 5788887 477777777654311112 334332221 2333455566765 334 4445654 1111122222
Q ss_pred cccceee-eecceeecCCchhHHHHHHHHHHhcccccC-CCCCc-cccc
Q psy3767 125 NFIDEEI-SVGDFILSGGELPAMMLIDAIVRLLPKVLN-NKLNM-QDSF 170 (246)
Q Consensus 125 ~~vdeei-SIGDyVLsGGElaAmvliDav~RliPGvLg-~~~S~-~eSF 170 (246)
.+...-. .-++.|...|-.+ +++++.+++-. .| +++.+ .|+|
T Consensus 180 ~l~~~~~~~~~~~v~vCGp~~---m~~~~~~~l~~-~G~~~~~i~~e~f 224 (224)
T cd06189 180 AVLEDFPDLSDFDVYACGSPE---MVYAARDDFVE-KGLPEENFFSDAF 224 (224)
T ss_pred HHHhhccCccccEEEEECCHH---HHHHHHHHHHH-cCCCHHHcccCCC
Confidence 1111111 1256788888766 56677776642 22 23444 6665
No 56
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.43 E-value=2.2e+02 Score=26.60 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHHHcCC--eEEEEEc---cCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhc
Q psy3767 23 RRAFEKKQ--YSLNLWN---PRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNI 78 (246)
Q Consensus 23 ~rA~~~g~--~~i~~~n---~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~ 78 (246)
+||.+.|. |+|+.-+ +.+|-....++-+|. |||. .-=++.-+.+.|+++++..
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~-yGGs--lenR~rf~~EiI~aIR~av 213 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDE-YGGS--LENRARLLLEIYDAIRAAV 213 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCcc-CCCC--HHHHHHHHHHHHHHHHHHc
Confidence 58888885 5565554 667777765555565 7764 5567777778888887643
No 57
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=25.17 E-value=30 Score=34.47 Aligned_cols=65 Identities=15% Similarity=0.298 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHhcccccCCCCCccccccCCCCCCCCCCCCCc--------------------cCCCCCCccccCCchH
Q psy3767 142 ELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRI--------------------YLNMEVPIVLLSGNHK 201 (246)
Q Consensus 142 ElaAmvliDav~RliPGvLg~~~S~~eSF~~gLLe~P~YTRP~~--------------------~~G~~VPeVLlSGnH~ 201 (246)
|--|.++||+|.-+=+|=|. ..+-..|.+|+||-|. .|-. |-.++.|+.....||+
T Consensus 328 e~Ea~~ild~I~elG~gdl~--~G~v~Aie~G~lDiPf--~~~~~n~g~v~~~rD~~G~~R~~d~G~lp~~~~~~~~~~~ 403 (428)
T cd00245 328 KAEVKAILDKVFELGDGDVA--RGTVKAFEAGVLDIPF--CPSIYNAGKMRPARDDNGRIRYLEFGNLPIPEDIKDFHRQ 403 (428)
T ss_pred HHHHHHHHHHHHHhCCccHH--HHHHHHHHcCCCcCCC--CCChhhcCCceeeEcCCCCEEEEecCCCCCchHHHHHHHH
Confidence 34588999999998765552 1227899999999998 4433 4468899999999999
Q ss_pred HHHHHHHHH
Q psy3767 202 KIKKWKRKN 210 (246)
Q Consensus 202 kI~~WR~~~ 210 (246)
++.+-...+
T Consensus 404 ~~~~r~~~e 412 (428)
T cd00245 404 RLAERAKAE 412 (428)
T ss_pred HHhhhhhcc
Confidence 997654444
No 58
>PRK07671 cystathionine beta-lyase; Provisional
Probab=25.17 E-value=1.2e+02 Score=28.57 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCcEEEe----CCCCCccCHHHHHHHhcCCCeEEEc
Q psy3767 81 IPKIIYM----SPQGKKLTHNIIIKLLKESNLILLC 112 (246)
Q Consensus 81 ~~~vI~l----sP~G~~~~Q~~a~~La~~~~lvliC 112 (246)
++++|++ .|-|...+-+...+++++..+.+|+
T Consensus 134 ~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvv 169 (377)
T PRK07671 134 NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIV 169 (377)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 4577773 5788899988899999877776665
No 59
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=25.14 E-value=80 Score=31.15 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCc
Q psy3767 96 HNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGE 142 (246)
Q Consensus 96 Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGE 142 (246)
|+..++..++.+++++||..+=|=+=.+. .+.-||||.-+=+
T Consensus 199 ~~il~~~~~~sRIiImCG~p~~ir~lm~~-----~~~~gDYVf~~ID 240 (380)
T cd06369 199 QKLLTDKNRKSNVIIMCGTPEDIVNLKGD-----RAVAEDIVIILID 240 (380)
T ss_pred HHHHHHhccCccEEEEeCCHHHHHHHHhc-----CccCCCEEEEEEe
Confidence 45566666778999999998855443332 3233899876543
No 60
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=24.39 E-value=84 Score=29.30 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=28.3
Q ss_pred cEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcch
Q psy3767 83 KIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQA 117 (246)
Q Consensus 83 ~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEG 117 (246)
..|+.|=-|-=.--.+|+++.+..+=|+||||-|-
T Consensus 6 nTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~ 40 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELGNTVIICGRNEE 40 (245)
T ss_pred cEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHH
Confidence 56777777777777889999998888999999763
No 61
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=23.78 E-value=58 Score=29.46 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=40.8
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeee---ecceeecCCchhHHH
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEIS---VGDFILSGGELPAMM 147 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiS---IGDyVLsGGElaAmv 147 (246)
+.+||+ |+|.++|.=....|+ +.|+||=|+ |++=++ ++-...+ ..=.||++|.+..+.
T Consensus 100 ~G~vi~--~~G~~vNPLd~v~~~--~~LvfiDgd----D~~Qv~-wak~~~~~~~~~k~ILv~Gs~~~~~ 160 (209)
T PRK13738 100 EGRVFA--RQGEVVNPLQYVPFN--QTLYFINGD----DPAQVA-WMKRQTPPTLESKIILVQGSIPEMS 160 (209)
T ss_pred CCCEEE--cCCCeECcccccCCC--ceEEEEeCC----CHHHHH-HHHHhhhccCCceEEEECCCHHHHH
Confidence 346777 899888886655555 689999988 777665 4433322 456899999986554
No 62
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=23.75 E-value=35 Score=26.59 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=18.7
Q ss_pred cchhhHhhhccccc---eeeeecceeecCCchh
Q psy3767 115 YQAIDQRFLDNFID---EEISVGDFILSGGELP 144 (246)
Q Consensus 115 YEGiDeRv~~~~vd---eeiSIGDyVLsGGEla 144 (246)
|-|+=.+|--.++. .++.+|||||.---.|
T Consensus 24 ~~Gv~r~V~l~Lv~~~~~~~~vGDyVLVHaGfA 56 (82)
T PRK10413 24 VCGIKRDVNIALICEGNPADLLGQWVLVHVGFA 56 (82)
T ss_pred cCCeEEEEEeeeeccCCcccccCCEEEEecchh
Confidence 44555555434553 3789999999755443
No 63
>KOG0365|consensus
Probab=23.68 E-value=55 Score=32.47 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred CCCCCCcccccHHHHHHHHHHH
Q psy3767 54 YGGGVGMIMLGKPIEDTITAIK 75 (246)
Q Consensus 54 yGGG~GMvm~~ePi~~al~~~~ 75 (246)
||||||-.=.-.|-++|+.++.
T Consensus 139 fgGGPGQl~HLA~TYAAVnaL~ 160 (423)
T KOG0365|consen 139 FGGGPGQLPHLAPTYAAVNALC 160 (423)
T ss_pred CCCCCccchhhhHHHHHHHHHH
Confidence 9999999999999999998874
No 64
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=23.60 E-value=1.3e+02 Score=27.32 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=48.3
Q ss_pred CCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchh---hHhhhccccceeeeec
Q psy3767 58 VGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAI---DQRFLDNFIDEEISVG 134 (246)
Q Consensus 58 ~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGi---DeRv~~~~vdeeiSIG 134 (246)
||.-.+ .+-++++-+...+ ...++||.-.|+-+.. .--..+-+||-|--+|+ |++.++...+.-||+|
T Consensus 105 pGi~V~-~~~~e~ll~~l~~---~~~ly~L~E~G~DI~~-----v~~~~np~FIlGDH~g~t~e~~k~L~r~~~~~ISlG 175 (197)
T COG1901 105 PGIYVR-NGGFEALLAELAE---GRSLYYLHEDGRDISE-----VDLIPNPVFILGDHIGLTEEDEKLLERHAAKKISLG 175 (197)
T ss_pred CCEEEe-cCCHHHHHHHHhc---cCcEEEEccCCccHhh-----cccCCCceEEeeCCCCCCHHHHHHHHHhhCceeEeC
Confidence 677666 3334444333222 3469999999985433 22267899999999998 7788888888889998
Q ss_pred c
Q psy3767 135 D 135 (246)
Q Consensus 135 D 135 (246)
=
T Consensus 176 P 176 (197)
T COG1901 176 P 176 (197)
T ss_pred c
Confidence 4
No 65
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=23.05 E-value=53 Score=25.00 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=17.0
Q ss_pred CCcEEEeCCCCCccCH--HHHHHHhc
Q psy3767 81 IPKIIYMSPQGKKLTH--NIIIKLLK 104 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q--~~a~~La~ 104 (246)
...|+|-||+|++|-+ ++++=|.+
T Consensus 27 ~~dV~Y~sP~GkklRs~~ev~~YL~~ 52 (77)
T smart00391 27 KFDVYYISPCGKKLRSKSELARYLHK 52 (77)
T ss_pred cccEEEECCCCCeeeCHHHHHHHHHh
Confidence 3579999999999963 34444443
No 66
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.78 E-value=4.2e+02 Score=21.81 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCCCCcEEEeC---CCCCccCHHHHHHHhcC---CCeEEEccCc-------chhhHhhhccccceeee
Q psy3767 66 PIEDTITAIKKNIKKIPKIIYMS---PQGKKLTHNIIIKLLKE---SNLILLCGRY-------QAIDQRFLDNFIDEEIS 132 (246)
Q Consensus 66 Pi~~al~~~~~~~~~~~~vI~ls---P~G~~~~Q~~a~~La~~---~~lvliCGrY-------EGiDeRv~~~~vdeeiS 132 (246)
|..+-++++.+. ++.+|.+| .+....-++..++|.+. +-.++++|.= +.+=++..+
T Consensus 42 p~e~i~~~a~~~---~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~-------- 110 (137)
T PRK02261 42 SQEEFIDAAIET---DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKE-------- 110 (137)
T ss_pred CHHHHHHHHHHc---CCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHH--------
Confidence 344445555443 57788877 44454556666666544 3456777763 222223332
Q ss_pred ec-ceeecCCchhHHHHHHHHHH
Q psy3767 133 VG-DFILSGGELPAMMLIDAIVR 154 (246)
Q Consensus 133 IG-DyVLsGGElaAmvliDav~R 154 (246)
.| |-|..+|+ +.--++|-+-+
T Consensus 111 ~G~~~vf~~~~-~~~~i~~~l~~ 132 (137)
T PRK02261 111 MGFDRVFPPGT-DPEEAIDDLKK 132 (137)
T ss_pred cCCCEEECcCC-CHHHHHHHHHH
Confidence 45 66778777 33444444444
No 67
>PRK05665 amidotransferase; Provisional
Probab=22.59 E-value=2.4e+02 Score=25.43 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=45.7
Q ss_pred CEEEEE---ecCccccHHHHhhhH-HHHHHHcCC--eEEEEEccCCCC-CCCCcccCCCCCCCCCCcccccHHHHHHHHH
Q psy3767 1 MQFDVI---TLFPEMFSAITQSGI-TRRAFEKKQ--YSLNLWNPRNFS-SNNYRKIDDYPYGGGVGMIMLGKPIEDTITA 73 (246)
Q Consensus 1 M~~~vi---TlFPe~f~~~~~~si-~~rA~~~g~--~~i~~~n~Rdf~-~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~ 73 (246)
|||-|| +..|+.-+.+=+++- +.+.+.+.. +++.++|+.+-. .+.....|=.-..||+.++-...|+...+.+
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~~l~~ 82 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQTLKT 82 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHHHHHH
Confidence 565555 235665554444554 444444333 567777765421 2234457778899999999998998777655
Q ss_pred H
Q psy3767 74 I 74 (246)
Q Consensus 74 ~ 74 (246)
.
T Consensus 83 ~ 83 (240)
T PRK05665 83 Y 83 (240)
T ss_pred H
Confidence 4
No 68
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=22.54 E-value=2.9e+02 Score=24.68 Aligned_cols=113 Identities=9% Similarity=0.029 Sum_probs=58.8
Q ss_pred cCCCCCCCCCCcccc---cHHHHHHHHHHHhhc--CCCCcEEEeCCCCCccCH-----HHHHHHhcC----CCeEEEccC
Q psy3767 49 IDDYPYGGGVGMIML---GKPIEDTITAIKKNI--KKIPKIIYMSPQGKKLTH-----NIIIKLLKE----SNLILLCGR 114 (246)
Q Consensus 49 VDD~pyGGG~GMvm~---~ePi~~al~~~~~~~--~~~~~vI~lsP~G~~~~Q-----~~a~~La~~----~~lvliCGr 114 (246)
.++.++=+..|-+-+ .+.+.+|++.+.... .++.++++.-......+. +..++++++ .+-|.+.|+
T Consensus 208 ~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~ 287 (392)
T cd03805 208 KSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPS 287 (392)
T ss_pred CCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 345555445554333 466777777775431 024566666533222221 333344433 233455787
Q ss_pred cchhhHhhhccccceeeeecceee--cCCchhHHHHHHHHHHhcccccCCCCCccc
Q psy3767 115 YQAIDQRFLDNFIDEEISVGDFIL--SGGELPAMMLIDAIVRLLPKVLNNKLNMQD 168 (246)
Q Consensus 115 YEGiDeRv~~~~vdeeiSIGDyVL--sGGElaAmvliDav~RliPGvLg~~~S~~e 168 (246)
...- .+.+ .++--|.+| |.-|--.+++++|++==+|=|..+.....|
T Consensus 288 ~~~~--~~~~-----~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e 336 (392)
T cd03805 288 ISDS--QKEL-----LLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLE 336 (392)
T ss_pred CChH--HHHH-----HHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHH
Confidence 6522 2222 233445444 455655678899999999988755433333
No 69
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=22.30 E-value=49 Score=25.23 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=10.7
Q ss_pred eeeeecceeecCCch
Q psy3767 129 EEISVGDFILSGGEL 143 (246)
Q Consensus 129 eeiSIGDyVLsGGEl 143 (246)
+++++||+|+.-.+-
T Consensus 1 ~~~~vGD~V~v~~~~ 15 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDD 15 (119)
T ss_dssp EEEETTSEEEEECTS
T ss_pred CEEeCCCEEEEeCCC
Confidence 478999999754433
No 70
>PRK10039 hypothetical protein; Provisional
Probab=22.10 E-value=1.8e+02 Score=24.71 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=27.0
Q ss_pred HHHHHHHHhhc-CCCCcEEEeCCCCCccCHHHHHHHhcC
Q psy3767 68 EDTITAIKKNI-KKIPKIIYMSPQGKKLTHNIIIKLLKE 105 (246)
Q Consensus 68 ~~al~~~~~~~-~~~~~vI~lsP~G~~~~Q~~a~~La~~ 105 (246)
.+|+.++.... ..+.+.+|.+++|.+++++-+.++.+.
T Consensus 88 ~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~~ 126 (127)
T PRK10039 88 ERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIKQ 126 (127)
T ss_pred HHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHhc
Confidence 67777663321 213357777999999999999998764
No 71
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=22.05 E-value=2.8e+02 Score=19.15 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=24.7
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcC--CCeEEEccCcch
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKE--SNLILLCGRYQA 117 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~--~~lvliCGrYEG 117 (246)
..+||+.+-.|. .....|..|.+. .++.++.|-|++
T Consensus 50 ~~~vv~~c~~~~-~a~~~~~~l~~~G~~~v~~l~gG~~~ 87 (89)
T cd00158 50 DKPIVVYCRSGN-RSARAAKLLRKAGGTNVYNLEGGMLA 87 (89)
T ss_pred CCeEEEEeCCCc-hHHHHHHHHHHhCcccEEEecCChhh
Confidence 456777777764 456667777654 678888887765
No 72
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=22.03 E-value=1.5e+02 Score=24.95 Aligned_cols=81 Identities=19% Similarity=0.349 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcCCCCcEEEeCCCCCccCHHHHHHHh-cCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHH
Q psy3767 68 EDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLL-KESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAM 146 (246)
Q Consensus 68 ~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~a~~La-~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAm 146 (246)
.+.|++-++. ...|+.||==|.+++. ...++- ..+++.+|.|- |=+.--+.+ .+|--||||.-==| |.||+
T Consensus 14 ~~~i~~wK~~---~G~VVHLTMYG~~i~d-vi~~Ir~~~~~~lvVVGa-eKVP~evYe-~ADyNVaVgnQPHS--EVAAL 85 (120)
T PF01994_consen 14 KSYIREWKEK---GGKVVHLTMYGENIDD-VIDEIRESCKDLLVVVGA-EKVPGEVYE-LADYNVAVGNQPHS--EVAAL 85 (120)
T ss_dssp HHHHHC-------SSEEEEE-TTSEEHHH-CHHHHHHCTSEEEEEE-S-S---CCHHH-HSSEEEESSSS-----HHHHH
T ss_pred HHHHHHhccc---CCeEEEEEecCCchHH-HHHHHhccCCCEEEEECC-CcCCHHHHh-hCCcceeeCCCChH--HHHHH
Confidence 3444444432 4689999999999955 566666 67788888875 556656666 78889999876554 89998
Q ss_pred HHHHHHHHhccc
Q psy3767 147 MLIDAIVRLLPK 158 (246)
Q Consensus 147 vliDav~RliPG 158 (246)
+|. .=||..|
T Consensus 86 AvF--LDrl~~G 95 (120)
T PF01994_consen 86 AVF--LDRLFEG 95 (120)
T ss_dssp HHH--HHHHCTT
T ss_pred HHH--HHHhcCC
Confidence 774 3366555
No 73
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=21.69 E-value=34 Score=28.32 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=23.9
Q ss_pred EEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCC
Q psy3767 35 LWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGK 92 (246)
Q Consensus 35 ~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~ 92 (246)
++|.|||.-..-...||++ -|.+||++.... ...+||+ |.|+
T Consensus 1 ~inv~~fGa~~dG~tDdt~------------Aiq~Ai~~~~~~---~g~~v~~-P~G~ 42 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTA------------AIQAAIDAAAAA---GGGVVYF-PPGT 42 (225)
T ss_dssp EEEGGGGT--TEEEEE-HH------------HHHHHHHHHCST---TSEEEEE--SEE
T ss_pred CcceeecCcCCCCChhHHH------------HHHHhhhhcccC---CCeEEEE-cCcE
Confidence 4788888888777778764 456666443222 3456665 7775
No 74
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=21.00 E-value=2e+02 Score=28.48 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHHhhcCCCCcEEEeC----CCCCccCHHHHHHHh---cCCCeEEEc
Q psy3767 62 MLGKPIEDTITAIKKNIKKIPKIIYMS----PQGKKLTHNIIIKLL---KESNLILLC 112 (246)
Q Consensus 62 m~~ePi~~al~~~~~~~~~~~~vI~ls----P~G~~~~Q~~a~~La---~~~~lvliC 112 (246)
+.++-+..|++.+... +.+++.|+++ |-|..++.+..++|+ ++.++.+||
T Consensus 181 ~~~~~le~a~~~a~~~-~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 181 LTVDAADWAYKKAQES-NKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred CCHHHHHHHHHHHHhc-CCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4556666666554322 1245766666 889999999888774 456777776
No 75
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=20.61 E-value=2.4e+02 Score=32.18 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=25.6
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcC--CeEEEEEccCCCCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKK--QYSLNLWNPRNFSS 43 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g--~~~i~~~n~Rdf~~ 43 (246)
|||.++|+|+.+-.......-- .++.. -+++.+++.+|...
T Consensus 69 ~~~v~i~~~~~~~~~~~~~a~~--~~~~~~~~l~l~~~~~~~~~~ 111 (1353)
T PLN03241 69 RRIVLVSGFESFNVGLYKQAAR--LLKRRCPNVDLVVFSDRDIES 111 (1353)
T ss_pred eEEEEEEchhhhhHHHHHHHHH--hccCCCCceEEEEeehhhhcc
Confidence 7899999998776544332211 22222 46788887777765
No 76
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=20.17 E-value=1e+02 Score=25.56 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=45.5
Q ss_pred cccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCC---CCcccCCCCCCCCCCcccccHHHHHHHHHHHh
Q psy3767 11 EMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSN---NYRKIDDYPYGGGVGMIMLGKPIEDTITAIKK 76 (246)
Q Consensus 11 e~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~d---kh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~ 76 (246)
+.-.++ ..+|.....+.| ++++++....-... .....|.--..||+|.+-..+...+.++.+.+
T Consensus 4 D~~~~~-~~~l~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~ 70 (192)
T PF00117_consen 4 DNGDSF-THSLVRALRELG-IDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARE 70 (192)
T ss_dssp ESSHTT-HHHHHHHHHHTT-EEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHH
T ss_pred eCCHHH-HHHHHHHHHHCC-CeEEEEECCCchhhhhhhhcCCCEEEECCcCCccccccccccccccccc
Confidence 334433 446666666666 89999988753222 25678999999999999888888888887755
No 77
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=20.08 E-value=89 Score=29.38 Aligned_cols=28 Identities=32% Similarity=0.653 Sum_probs=20.2
Q ss_pred ccceeeeecceeecCCch---------hHHHHHHHHHHhc
Q psy3767 126 FIDEEISVGDFILSGGEL---------PAMMLIDAIVRLL 156 (246)
Q Consensus 126 ~vdeeiSIGDyVLsGGEl---------aAmvliDav~Rli 156 (246)
.+++.+ |+||-+|.+ |-...++++.||.
T Consensus 36 a~~~~v---D~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~ 72 (390)
T COG0420 36 AKEEKV---DFVLIAGDLFDTNNPSPRALKLFLEALRRLK 72 (390)
T ss_pred HHHccC---CEEEEccccccCCCCCHHHHHHHHHHHHHhc
Confidence 445555 999999986 5566677777775
No 78
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=20.08 E-value=1.6e+02 Score=27.39 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCc
Q psy3767 96 HNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGE 142 (246)
Q Consensus 96 Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGE 142 (246)
++..+++.+..+++++|+.++-+ .+++....+.-+.-||||...=+
T Consensus 185 ~~~l~~ik~~~rvii~~~~~~~~-~~ll~~A~~~gm~~~~yv~i~~d 230 (387)
T cd06386 185 DEIIRAIQASERVVIMCAGADTI-RSIMLAAHRRGLTSGDYIFFNIE 230 (387)
T ss_pred HHHHHHHHhcCcEEEEecCHHHH-HHHHHHHHHcCCCCCCEEEEEEe
Confidence 45666666666999999988654 44555455556666888766544
Done!