Query psy3767
Match_columns 246
No_of_seqs 103 out of 1049
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 16:45:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ual_A TRNA (guanine-N(1)-)-me 100.0 3E-122 1E-126 832.5 20.4 241 1-245 21-262 (274)
2 4h3z_A TRNA (guanine-N(1)-)-me 100.0 4E-122 1E-126 833.4 20.5 245 1-245 22-271 (276)
3 3ky7_A TRNA (guanine-N(1)-)-me 100.0 3E-122 9E-127 830.3 18.8 239 1-245 25-264 (269)
4 3ief_A TRNA (guanine-N(1)-)-me 100.0 6E-121 2E-125 809.3 14.4 222 1-226 4-226 (233)
5 1oy5_A TRNA (guanine-N(1)-)-me 100.0 1E-120 4E-125 816.3 13.2 235 1-244 6-241 (257)
6 3knu_A TRNA (guanine-N(1)-)-me 100.0 3E-120 1E-124 811.6 14.6 230 1-237 22-252 (253)
7 3quv_A TRNA (guanine-N(1)-)-me 100.0 2E-119 8E-124 803.7 16.4 224 1-228 5-236 (246)
8 1o6d_A Hypothetical UPF0247 pr 95.8 0.11 3.7E-06 43.8 11.5 133 1-155 3-142 (163)
9 1to0_A Hypothetical UPF0247 pr 94.4 0.35 1.2E-05 40.7 10.4 141 1-155 1-148 (167)
10 3oii_A Essential for mitotic g 94.0 0.042 1.5E-06 49.5 4.2 71 82-154 176-248 (253)
11 4fak_A Ribosomal RNA large sub 93.3 0.098 3.4E-06 44.0 5.0 136 1-154 5-151 (163)
12 3aia_A UPF0217 protein MJ1640; 92.4 0.033 1.1E-06 48.8 0.9 107 8-139 82-191 (211)
13 1ns5_A Hypothetical protein YB 91.0 0.16 5.5E-06 42.3 3.5 136 1-155 1-143 (155)
14 2qmm_A UPF0217 protein AF_1056 88.6 0.21 7.3E-06 43.2 2.5 102 7-139 76-180 (197)
15 3bbd_A Ribosome biogenesis pro 43.0 8.8 0.0003 33.3 1.5 68 63-140 122-192 (205)
16 3dcm_X AdoMet, uncharacterized 42.4 51 0.0017 28.1 6.2 138 16-161 28-185 (192)
17 3o7b_A Ribosome biogenesis NEP 41.5 12 0.0004 33.5 2.1 55 83-141 168-225 (244)
18 3ff4_A Uncharacterized protein 38.9 42 0.0014 26.0 4.8 89 18-117 20-114 (122)
19 3d3r_A Hydrogenase assembly ch 35.4 6.9 0.00024 30.7 -0.3 26 114-139 43-68 (103)
20 2gi4_A Possible phosphotyrosin 24.4 33 0.0011 27.5 1.9 22 35-57 107-129 (156)
21 1zmr_A Phosphoglycerate kinase 24.1 1.8E+02 0.0063 27.4 7.1 63 53-117 25-98 (387)
22 3n4j_A RNA methyltransferase; 22.6 1.4E+02 0.0049 23.8 5.5 127 15-155 14-155 (165)
23 3sho_A Transcriptional regulat 22.3 1.9E+02 0.0065 22.3 6.0 72 81-156 88-163 (187)
24 3vxv_A Methyl-CPG-binding doma 21.7 35 0.0012 24.6 1.4 22 83-104 27-50 (69)
25 3uoa_B Mucosa-associated lymph 20.5 26 0.00087 32.9 0.5 33 105-140 342-377 (390)
26 2qwv_A UPF0217 protein VC_A105 20.4 32 0.0011 30.0 1.1 95 19-138 91-188 (208)
27 4dov_A ORC1, origin recognitio 20.3 38 0.0013 28.5 1.5 17 128-144 36-52 (163)
28 4egs_A Ribose 5-phosphate isom 20.3 1E+02 0.0036 25.2 4.2 21 35-57 138-158 (180)
No 1
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37)methyltrans tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 3axz_A* 1p9p_A*
Probab=100.00 E-value=2.8e-122 Score=832.53 Aligned_cols=241 Identities=45% Similarity=0.837 Sum_probs=224.6
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|||||||||++++++||+|||+++|+|+|++|||||||.|||++||||||||||||||+|||+++||++++.....
T Consensus 21 Mr~dvlTLFPemf~~~l~~sI~grA~~~gl~~i~~~n~Rdfa~dkHr~VDD~PyGGGaGMVm~~ePl~~Al~~~~~~~~~ 100 (274)
T 1ual_A 21 MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGE 100 (274)
T ss_dssp EEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHHHCT
T ss_pred eEEEEEEEChhhhhhhhhccHHHHHHHCCCeEEEEEcchhccCCCCCCCCCCCCCCCCCcEecHHHHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999754221
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
.++||||||||++|||++|++||++++|||||||||||||||++.++|||||||||||||||+|||||||||+|||||||
T Consensus 101 ~~~vI~lsP~G~~f~Q~~a~eLa~~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtGGElaAmvliDAv~RLlPGVL 180 (274)
T 1ual_A 101 GAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL 180 (274)
T ss_dssp TCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTTCC
T ss_pred CCeEEEECCCCCcCCHHHHHHHHCCCCEEEEeccccchHHHHHhhcCcEEEecccEEecCccHHHHHHHHHHHHcCCCCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHHHH
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF 239 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~~~ 239 (246)
||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||++..+ |++|+++
T Consensus 181 Gn~~S~~~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~~I~~WR~~qsl~rT~~rRPDLl~~~~l----~~~~~~~ 256 (274)
T 1ual_A 181 GKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLAL----TDEQRKL 256 (274)
T ss_dssp ---------CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCC----CHHHHHH
T ss_pred CChhhcccccccCCCCCCCCCCCccccCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHhChhHHhhcCC----CHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999999998877 9999999
Q ss_pred HHHHhh
Q psy3767 240 LKKINK 245 (246)
Q Consensus 240 l~~~~~ 245 (246)
|+++++
T Consensus 257 L~~~~~ 262 (274)
T 1ual_A 257 LKEAQA 262 (274)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 2
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=100.00 E-value=4.3e-122 Score=833.43 Aligned_cols=245 Identities=55% Similarity=0.996 Sum_probs=231.7
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhc--
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNI-- 78 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~-- 78 (246)
|||+|||||||||++++++||+|||+++|+|++++|||||||.|||++|||+||||||||||+|||+++||++++...
T Consensus 22 MridilTlFPe~f~~~l~~si~grA~~~gl~~i~~~n~Rdf~~dkh~~VDD~PyGGG~GMVm~~ePl~~ai~~~~~~~~~ 101 (276)
T 4h3z_A 22 MQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAE 101 (276)
T ss_dssp EEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSSCEECHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEChHhhhhHhhccHHHHHHHcCCeEEEEEChhhhCCCCCCccCCCccCCCCceEEeeHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999996531
Q ss_pred --CCCCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhc
Q psy3767 79 --KKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLL 156 (246)
Q Consensus 79 --~~~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~Rli 156 (246)
..+++||||||||++|||++|++||++++|||||||||||||||+++++|||||||||||||||+|||||||||+|||
T Consensus 102 ~~~~~~~vI~lsP~G~~f~Q~~a~~La~~~~liliCGrYEGiDeRvie~~vdeEiSIGDyVLsGGElaAmvliDav~RLl 181 (276)
T 4h3z_A 102 QGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHL 181 (276)
T ss_dssp TTCCSCEEEEEEEEEEECCHHHHHHHHTSSEEEEECCCSSEECHHHHHHHCCEEEESSSSCCSCSHHHHHHHHHHHHHTS
T ss_pred ccCCCceEEEECCCCCeeehHHHHHhhccCCEEEEeccccchhHHHHhccCCeEEEecCEEeeCccHHHHHHHHHHHHhC
Confidence 124789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHH
Q psy3767 157 PKVLNNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235 (246)
Q Consensus 157 PGvLg~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~ 235 (246)
||||||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||+++..+..||++
T Consensus 182 PGVLGn~~S~~~eSF~~gLLe~P~YTRP~~~~g~~VPeVLlSGnH~~I~~WR~~qsl~rT~~rRPDLl~~~~~~~~Ls~~ 261 (276)
T 4h3z_A 182 PGVLNDAQSAVQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRA 261 (276)
T ss_dssp TTCCC------CCTTTTSSCCCCCCCSCSEETTEECCHHHHTTCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCHH
T ss_pred CCccCChhhhchhhhccCCCCCCccCCccccCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHCHHHHHhhhhcCCCCHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999998767788999
Q ss_pred HHHHHHHHhh
Q psy3767 236 DEEFLKKINK 245 (246)
Q Consensus 236 ~~~~l~~~~~ 245 (246)
|+++|+++++
T Consensus 262 d~~~L~~~~~ 271 (276)
T 4h3z_A 262 DEAWLASLAK 271 (276)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 3
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0
Probab=100.00 E-value=2.8e-122 Score=830.28 Aligned_cols=239 Identities=41% Similarity=0.774 Sum_probs=219.7
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|||||||||++++++||+|||+++|+|++++|||||||.|||++|||+||||||||||+|||+++||++++.. +
T Consensus 25 MridvlTLFPemf~~~l~~sI~gRA~~~gl~~i~~~n~Rdf~~dkH~~VDD~PyGGGaGMVm~~ePl~~Al~~~~~~-~- 102 (269)
T 3ky7_A 25 MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVT-E- 102 (269)
T ss_dssp CEEEEEESCGGGGHHHHHHTTTHHHHHTTSCEEEEEEGGGGC-CCSCCSEECCTTCCSSCEECHHHHHHHHHHTTCC-T-
T ss_pred eEEEEEEEChHHhhhHhhhhHHHHHHHCCCeEEEEEcchhhcCCCCcccCCCCCCCCCCcEeeHHHHHHHHHHHHhc-C-
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999753 2
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
.++||||||||++|||++|++||++++|||||||||||||||+++++|||||||||||||||+|||||||||+|||||||
T Consensus 103 ~~~vI~lsP~G~~f~Q~~a~eLa~~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtGGElaAmvliDAv~RLlPGVL 182 (269)
T 3ky7_A 103 QARVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVL 182 (269)
T ss_dssp TSEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCCSCBCHHHHHHTCCEEEESSSSCCSCSHHHHHHHHHHHHTTSCC--
T ss_pred CCcEEEECCCCCccCHHHHHHHHCCCCEEEEecccccHHHHHHHhhCcEEeeeccEEeeCchHHHHHHHHHHHHhCCCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHHHH
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF 239 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~~~ 239 (246)
||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||++..+ |++++++
T Consensus 183 G~~~S~~~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~~I~~WR~~qsl~rT~~rRPDLl~~~~l----~~~~~~~ 258 (269)
T 3ky7_A 183 GNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPL----TNADKQI 258 (269)
T ss_dssp -----------CCSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTSCC----CHHHHHH
T ss_pred CChhhcccccccCCCCCCCCCCCccccCCCcCChhhcCccHHHHHHHHHHHHHHHHHHhChhhHhhccC----CHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999999998888 9999999
Q ss_pred HHHHhh
Q psy3767 240 LKKINK 245 (246)
Q Consensus 240 l~~~~~ 245 (246)
|+++++
T Consensus 259 L~~~~~ 264 (269)
T 3ky7_A 259 LERYKI 264 (269)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 4
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae}
Probab=100.00 E-value=5.9e-121 Score=809.26 Aligned_cols=222 Identities=36% Similarity=0.691 Sum_probs=212.9
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|+|||||||++++++||+|||+++|++++++||+||||.||||+|||+||||||||||++||+++||++++..
T Consensus 4 Mr~dvlTlFPe~f~~~l~~si~grA~~~gl~~i~~~n~Rdf~~dkh~~VDD~PyGGGaGMVm~~ePl~~al~~~~~~--- 80 (233)
T 3ief_A 4 FQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKHHSVDDTPAGGGAGMVMRADVLAAALDSCPND--- 80 (233)
T ss_dssp EEEEEEESCGGGSSGGGGSHHHHHHHHTTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHHHHHTTSCCC---
T ss_pred eEEEEEEEChHHhhhHhhccHHHHHHHCCCeEEEEEcchhhcCCCCcccCCCCCCCCCCcEeeHHHHHHHHHHhhcC---
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998542
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
++||||||||++|||++|++||++++|||||||||||||||+++++|||||||||||||||+|||||||||+|||||||
T Consensus 81 -~~vI~lsP~G~~f~Q~~a~eLa~~~~lillCGrYEGiDeRv~~~~vdeEiSIGDyVLtGGElaAmv~iDAv~RLlPGVL 159 (233)
T 3ief_A 81 -SPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVM 159 (233)
T ss_dssp -SCEEEEEEEEEECCHHHHHHHTTSSEEEEEECCSSCBBHHHHHHTTCEEEESSSSCCSCHHHHHHHHHHHHHTTSTTSS
T ss_pred -CCEEEECCCCCccCHHHHHHHHCCCCEEEEecccccHHHHHHHhhCceEeeeccEEeeCchHHHHHHHHHHHHhCCCcc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhh
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKA 226 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~ 226 (246)
||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||+++
T Consensus 160 g~~~S~~~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~~I~~WR~~qsl~rT~~rRPDLl~~~ 226 (233)
T 3ief_A 160 GNEISAKCESFENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALY 226 (233)
T ss_dssp SGGGCCSSCGGGGTCCCCCBCCSSSEETTEECCGGGGSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCccccccccccCCCCCCCCCCCccccCCCcCChhhcCccHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999999999886
No 5
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, B structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Probab=100.00 E-value=1.3e-120 Score=816.31 Aligned_cols=235 Identities=39% Similarity=0.685 Sum_probs=210.0
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|+|||||||++++++||+|||+++|+|++++||||||| |||+|||+||||||||||+|||+++||++++...+
T Consensus 6 Mr~~vlTLFPemf~~~l~~si~grA~~~gl~~i~~~n~Rdf~--khr~VDD~PyGGGaGMVm~~epl~~ai~~~~~~~~- 82 (257)
T 1oy5_A 6 LRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFA--PKGQVDDVPYGGLPGMVLKPEPIYEAYDYVVENYG- 82 (257)
T ss_dssp EEEEEEESCHHHHHHHTTSHHHHHHHHHTSEEEEEEEGGGGC--TTSCCEECBSSCCSSCEECHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhhhhhhhhhcHHHHHHHCCCeEEEEEcchhhc--cCCCCCCCCCCCCCCcEecHHHHHHHHHHHHhcCC-
Confidence 899999999999999999999999999999999999999999 99999999999999999999999999999975422
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
.++||||||||++|||++|++||++++|||||||||||||||++ ++|||||||||||||||+|||||||||+|||||||
T Consensus 83 ~~~vI~lsP~G~~f~Q~~a~eLa~~~~lillCGrYEGiDeRv~e-~vdeEiSIGDyVLtGGElaAmvliDAv~RLlPGVL 161 (257)
T 1oy5_A 83 KPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKK-IVDMEISLGDFILSGGEIVALAVIDAVSRVLPGVL 161 (257)
T ss_dssp CCEEEEECTTBCCCCHHHHHHHHTCSEEEEEECBTTCBCGGGGG-GCCEECCBCSSCCSBSHHHHHHHHHHHHHTSTTTS
T ss_pred CCeEEEECCCCCcCCHHHHHHHhCCCCEEEEeccccchhHHHHh-hcceEeecccEEecCccHHHHHHHHHHHHhCCCcc
Confidence 35799999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHHHH
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF 239 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~~~ 239 (246)
||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||++. + |++|+++
T Consensus 162 G~~~S~~~eSF~~gLLe~P~YTRP~~~~G~~VP~VLlSGnH~~I~~WR~~qsl~rT~~rRPDLl~~~-l----~~~~~~~ 236 (257)
T 1oy5_A 162 SEPQSIQEDSFQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPKD-L----TELEKDI 236 (257)
T ss_dssp SCC--------------CCCCBSCSEETTEECCGGGTSCSSSTTTHHHHHHHTTTGGGSCSSCSTTG-G----GTTTTC-
T ss_pred CChhhccccccccCCCCCCCCCCccccCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHhChHHHHHh-c----CHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999999999987 7 9999998
Q ss_pred HHHHh
Q psy3767 240 LKKIN 244 (246)
Q Consensus 240 l~~~~ 244 (246)
|++++
T Consensus 237 L~~~~ 241 (257)
T 1oy5_A 237 LNSIL 241 (257)
T ss_dssp -----
T ss_pred HHHHH
Confidence 88764
No 6
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, tRNA methyl transferase; 2.25A {Anaplasma phagocytophilum} PDB: 4ig6_A*
Probab=100.00 E-value=2.8e-120 Score=811.64 Aligned_cols=230 Identities=39% Similarity=0.718 Sum_probs=186.9
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|||||||||++++++||+|||+++|+|++++|||||||.||||+|||+||||||||||++||+++||++++.. .+
T Consensus 22 MridvlTLFPemf~~~l~~sI~gRA~~~gl~~i~~~n~Rdft~dkhr~VDD~PyGGGaGMVm~~ePl~~Al~~~~~~-~~ 100 (253)
T 3knu_A 22 MIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPGMLLRADVLGRCIDEVLSL-HP 100 (253)
T ss_dssp EEEEEEESCGGGCSGGGGSHHHHHHHHHTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHHHHHHHHHHH-CT
T ss_pred eEEEEEEEChHHhhhHhhhhHHHHHHHCCCeEEEEEcchhccCCCCCccCCCCCCCCCccEecHHHHHHHHHHHHhc-CC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999765 22
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
+++||||||||++|||++|++||++++|||||||||||||||+++++|||||||||||||||+|||||||||+|||||||
T Consensus 101 ~~~vI~lsP~G~~f~Q~~a~eLa~~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtGGElaAmvliDAv~RLlPGVL 180 (253)
T 3knu_A 101 NTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPGVI 180 (253)
T ss_dssp TCEEEEEEEEEEECCHHHHHHHHTCSEEEEEECCTTCBCHHHHHHHTCEEEESSSSCCSSSHHHHHHHHHHHHTTSTTTC
T ss_pred CCcEEEECCCCCccCHHHHHHHhCCCCEEEEecccccHHHHHHHhhCceEeeeccEEeeCchHHHHHHHHHHHHhCCCcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHH
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDE 237 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~ 237 (246)
||++|+ +|||+ |||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||++. + +.+|.
T Consensus 181 G~~~S~~~eSF~-gLLe~P~YTRP~~~~G~~VPeVLlSGnH~~I~~WR~~qsl~rT~~rRPDLl~~~-~----~~~d~ 252 (253)
T 3knu_A 181 GNAESLKQESME-GSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLLKDR-Y----GENDV 252 (253)
T ss_dssp ----------------CCCCCCSCSEETTEECCGGGGTTCHHHHHHHHHHHCC-------------------------
T ss_pred CCcccccccccc-cccCCCCCCCccccCCCCCChhhcCccHHHHHHHHHHHHHHHHHHhChHHHhhh-c----ccccC
Confidence 999999 99999 999999999999999999999999999999999999999999999999999764 4 66553
No 7
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural genomics center for infectious D ssgcid, tRNA methyltransferase; 1.70A {Mycobacterium abscessus}
Probab=100.00 E-value=2.3e-119 Score=803.65 Aligned_cols=224 Identities=35% Similarity=0.658 Sum_probs=205.3
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|||||||||++ +++||++||+++|+|++++|||||||.||||+|||+||||||||||++||+++||++++..
T Consensus 5 Mr~dvlTLFPe~f~~-l~~si~grA~~~gl~~i~~~n~Rdft~dkh~~VDD~PyGGGaGMVm~~ePl~~Al~~~~~~--- 80 (246)
T 3quv_A 5 MKIDVVTIFPEYLQP-VRQSLPGKAIDAGLVDVAVHDLRRWTHDVHKSVDDSPYGGGPGMVMKPTVWGDALDEICTS--- 80 (246)
T ss_dssp EEEEEEESCGGGGHH-HHHTSCHHHHHTTSEEEEEEEGGGGCCSTTCCCEECCTTCCSSCEECHHHHHHHHHHHCCT---
T ss_pred eEEEEEEEChhhhhh-hhhhHHHHHHHCCCeEEEEEcchhhccCCCcccCCCCCCCCCccEeeHHHHHHHHHHHHhc---
Confidence 899999999999996 9999999999999999999999999999999999999999999999999999999999653
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhc----cccceeeeecceeecCCchhHHHHHHHHHHhc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLD----NFIDEEISVGDFILSGGELPAMMLIDAIVRLL 156 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~----~~vdeeiSIGDyVLsGGElaAmvliDav~Rli 156 (246)
+++||||||||++|||++|++||++++|||||||||||||||++ +++|||||||||||||||+|||||||||+|||
T Consensus 81 ~~~vI~lsP~G~~f~Q~~a~eLa~~~~lillCGrYEGiDeRv~e~~~~~~vdeEiSIGDyVLtGGElaAmvliDAv~RLl 160 (246)
T 3quv_A 81 ETLLVVPTPAGYPFTQETAWQWSTEDHLVIACGRYEGIDQRVADDAATRMRVREVSIGDYVLNGGEAAALVIIEAVLRLV 160 (246)
T ss_dssp TCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCBTTCBCHHHHHHHTTTSEEEEEESSSSCCSBSHHHHHHHHHHHHTTS
T ss_pred CCcEEEECCCCCccCHHHHHHHhCCCCEEEEeccccchhHHHHhccccccceEEEeeccEEeeCchHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred ccccCCCCCc-cccccCC---CCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhc
Q psy3767 157 PKVLNNKLNM-QDSFING---LLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARK 228 (246)
Q Consensus 157 PGvLg~~~S~-~eSF~~g---LLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l 228 (246)
||||||++|+ +|||++| ||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||+++..
T Consensus 161 PGVLG~~~S~~~eSF~~g~~~LLe~P~YTRP~~~~G~~VPeVLlSGnH~~I~~WR~~qsl~rT~~rRPDLl~~~~~ 236 (246)
T 3quv_A 161 PGVLGNALSAQEDSHSEGMASLLEGPSYTRPPSWRGMDVPPVLLSGDHAKIAAWRAEQSRQRTIERRPDLLGFDSP 236 (246)
T ss_dssp TTSSSCC-------------CCCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCGGGC-----
T ss_pred CCccCChhhccccccccCcccccCCCCCCCccccCCCCCChhhccCCHHHHHHHHHHHHHHHHHHhChHHHhhcCc
Confidence 9999999999 9999999 9999999999999999999999999999999999999999999999999998765
No 8
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=95.84 E-value=0.11 Score=43.75 Aligned_cols=133 Identities=8% Similarity=0.143 Sum_probs=92.3
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHc-CCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHH-HHHHHHHHHhhc
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEK-KQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKP-IEDTITAIKKNI 78 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~-g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~eP-i~~al~~~~~~~ 78 (246)
|+|.|+++=--. .|+..++=.=+-+- ....++++.+.|-.. . ..+- ..+.=+.+.+..
T Consensus 3 Mki~IiaVGk~k--~~~~~~i~eY~kRl~~~~~lei~ev~~~k~--------------~----~~~~~~~~E~~~il~~i 62 (163)
T 1o6d_A 3 LRVRIAVIGKLD--GFIKEGIKHYEKFLRRFCKPEVLEIKRVHR--------------G----SIEEIVRKETEDLTNRI 62 (163)
T ss_dssp CEEEEEEESCCC--HHHHHHHHHHHHHHTTTCEEEEEEECCCCC--------------S----CHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEecCcc--HHHHHHHHHHHHHcCccCCceEEEecCccc--------------c----cHHHHHHHHHHHHHHhc
Confidence 889999986544 56676665433332 367899988887544 0 1111 111112222221
Q ss_pred CCCCcEEEeCCCCCccC-HHHHHHHhcC----CCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHH
Q psy3767 79 KKIPKIIYMSPQGKKLT-HNIIIKLLKE----SNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIV 153 (246)
Q Consensus 79 ~~~~~vI~lsP~G~~~~-Q~~a~~La~~----~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~ 153 (246)
+++..||.|.+.|+.+| .+.|+.|.+. .+++|+-|==.|+|+.+++ -.|+-+|+|...++= +++-+++++-+-
T Consensus 63 ~~~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~i~FvIGGa~Gl~~~v~~-rAd~~lSlS~mTfpH-qL~RliL~EQiY 140 (163)
T 1o6d_A 63 LPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFA-KAHRVFSLSKMTFTH-GMTVLIVLEQIF 140 (163)
T ss_dssp CTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGG-GCSEEEECCSSCCCH-HHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHH-hhCceEEccCCCCcH-HHHHHHHHHHHH
Confidence 22346999999999998 4567666543 6899999999999999998 689999999998874 788888888887
Q ss_pred Hh
Q psy3767 154 RL 155 (246)
Q Consensus 154 Rl 155 (246)
|-
T Consensus 141 RA 142 (163)
T 1o6d_A 141 RA 142 (163)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 9
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=94.39 E-value=0.35 Score=40.73 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=90.3
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHc-CCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEK-KQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIK 79 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~-g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~ 79 (246)
|+|.|+++= ..-+.|+..++=.=+-+- ....++++.+.|-...+-. ..... ..-..+-=+.+.+..+
T Consensus 1 Mki~Ii~VG-k~k~~~~~~~i~eY~kRl~~~~~lei~ev~~~k~~~~~--------~~~~~---~~~~~~E~~~il~~i~ 68 (167)
T 1to0_A 1 MNINIVTIG-KLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENL--------SDQDM---KIIKDKEGDRILSKIS 68 (167)
T ss_dssp CEEEEEEES-CCCCHHHHHHHHHHHHHHTTTSEEEEEEECCCCC--------------------CHHHHHHHHHHHTTSC
T ss_pred CeEEEEEEc-ccCcHHHHHHHHHHHHHcCccCCceEEEecCccCcccc--------ccccH---HHHHHHHHHHHHhhcC
Confidence 889999873 334445565554433322 3678999988886543310 00000 0001111111212112
Q ss_pred CCCcEEEeCCCCCccC-HHHHHHHhc---C--CCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHH
Q psy3767 80 KIPKIIYMSPQGKKLT-HNIIIKLLK---E--SNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIV 153 (246)
Q Consensus 80 ~~~~vI~lsP~G~~~~-Q~~a~~La~---~--~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~ 153 (246)
++..||.|.+.|+.+| .+.|..|.+ . .+++|+-|==.|+|+.+++ -+|+-+|+|...++= +++-+++++-+-
T Consensus 69 ~~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~-rA~~~lSlS~mTfpH-qL~RliL~EQiY 146 (167)
T 1to0_A 69 PDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMK-RADEKLSFSKMTFPH-QLMRLILVEQIY 146 (167)
T ss_dssp TTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHH-HCSEEEESCSSCCCH-HHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHH-hhCcEEEccCCCCcH-HHHHHHHHHHHH
Confidence 2346999999999998 457766654 2 5799999999999999997 689999999998874 788888888887
Q ss_pred Hh
Q psy3767 154 RL 155 (246)
Q Consensus 154 Rl 155 (246)
|-
T Consensus 147 RA 148 (167)
T 1to0_A 147 RA 148 (167)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 10
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=94.00 E-value=0.042 Score=49.47 Aligned_cols=71 Identities=15% Similarity=0.335 Sum_probs=50.1
Q ss_pred CcEEEeCCCCCccC-HHHHHHHhcCCCeEEEccC-cchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHH
Q psy3767 82 PKIIYMSPQGKKLT-HNIIIKLLKESNLILLCGR-YQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVR 154 (246)
Q Consensus 82 ~~vI~lsP~G~~~~-Q~~a~~La~~~~lvliCGr-YEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~R 154 (246)
.++|.||+.|+..+ .+.+..+...++++|+-|= =.| +.-+-+.++++.+||++|-||+ ..++..|+.|.=+
T Consensus 176 ~~kI~ls~~g~~v~~~~~~~~l~~~~~i~vvVGafahG-~~~f~~~~~~e~iSIs~ypLsa-~~~c~kic~a~E~ 248 (253)
T 3oii_A 176 CRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARG-KDNFADEYVDEKVGLSNYPLSA-SVACSKFCHGAED 248 (253)
T ss_dssp EEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSC-CSCTTTTTCSEEEBSCSSCCCH-HHHHHHHHHHHHH
T ss_pred CeEEEEccCCCccCHHHHHHhcccCCCeEEEEeeeCCC-CCcccchhcceeEEEeCCChhH-HHHHHHHHHHHHH
Confidence 46999999999888 5666666666677777663 334 1111123788999999999998 7777777776644
No 11
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=93.32 E-value=0.098 Score=43.99 Aligned_cols=136 Identities=16% Similarity=0.260 Sum_probs=91.1
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHH-cCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHH----HHHH
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFE-KKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTI----TAIK 75 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~-~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al----~~~~ 75 (246)
|+|.|+++= ..-+.|+..++-.=+-+ .....++++.+.|-...+ . ++.....+.. +.+.
T Consensus 5 Mki~ii~VG-k~k~~~~~~~i~eY~kRl~~~~~~ei~ei~~~k~~~-----------~----~s~~~~~~~~~~Eg~~il 68 (163)
T 4fak_A 5 MKITILAVG-KLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPE-----------N----MSDKEIEQVKEKEGQRIL 68 (163)
T ss_dssp CEEEEEEES-CCCCHHHHHHHHHHHHHHTTTCEEEEEEECCCCCCT-----------T----CCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEec-CcCcHHHHHHHHHHHHHccCcCCeEEEEeccccccc-----------c----cchhhHHHHHHHHHHHHH
Confidence 888888873 23345555555433322 346788888887643321 1 1111122211 1122
Q ss_pred hhcCCCCcEEEeCCCCCccC-HHHHHHHhc-----CCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHH
Q psy3767 76 KNIKKIPKIIYMSPQGKKLT-HNIIIKLLK-----ESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLI 149 (246)
Q Consensus 76 ~~~~~~~~vI~lsP~G~~~~-Q~~a~~La~-----~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvli 149 (246)
...+++..||.|.+.|+.+| .+.|+.|.+ ..+++|+-|==.|+++.+.+ -.|+-||+|..-++= +++-++++
T Consensus 69 ~~i~~~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~Gl~~~v~~-rA~~~lSlS~mTfpH-qL~RliL~ 146 (163)
T 4fak_A 69 AKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQ-RSNYALSFSKMTFPH-QMMRVVLI 146 (163)
T ss_dssp HTCCTTSEEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHH-HCSEEEESCSSCCCH-HHHHHHHH
T ss_pred HhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCcceEEEEECCCccCHHHHH-hcCceEEEecCCCCH-HHHHHHHH
Confidence 22233568999999999997 467877765 36899999999999999998 689999999998874 67788888
Q ss_pred HHHHH
Q psy3767 150 DAIVR 154 (246)
Q Consensus 150 Dav~R 154 (246)
+-+-|
T Consensus 147 EQlYR 151 (163)
T 4fak_A 147 EQVYR 151 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87776
No 12
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=92.37 E-value=0.033 Score=48.78 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=76.4
Q ss_pred cCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEe
Q psy3767 8 LFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYM 87 (246)
Q Consensus 8 lFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~l 87 (246)
+-|+.=. -.+++.+|+++|.. + | ..+-...-.+-|||-++-..+.+.|+++... ..+++||
T Consensus 82 v~PdeRs---~~~li~kaL~~~~~-~---~---------~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~---~~~v~~L 142 (211)
T 3aia_A 82 VSPDERN---IAIFIKKALKKFEE-L---D---------EEQRKDWNQSTPGIYVRRLGFRNLVLEKLEE---GKNIYYL 142 (211)
T ss_dssp CCSSHHH---HHHHHHHHHHHHHH-S---C---------TTGGGSCEEEETTEEEECCCHHHHHHHHHHT---TCEEEEE
T ss_pred cChhHHH---HHHHHHHHHHhccc-c---c---------ccCCcccccCCCCeEEEcCCHHHHHHHHhhc---CCcEEEE
Confidence 6677653 34899999998620 0 0 0122222355699999999999999988643 2369999
Q ss_pred CCCCCccCHHHHHHHhcCCCeEEEccCcchhhHh---hhccccceeeeecceeec
Q psy3767 88 SPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQR---FLDNFIDEEISVGDFILS 139 (246)
Q Consensus 88 sP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeR---v~~~~vdeeiSIGDyVLs 139 (246)
...|+.+..... .+.+||-|=--|+.+. +++...++.+|||...|.
T Consensus 143 ~E~G~~i~~~~~------~~~~fvlGdH~~f~~e~~~~L~~~~~~~iSigp~~L~ 191 (211)
T 3aia_A 143 HMNGEDVENVDI------ENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELH 191 (211)
T ss_dssp EEEEEEGGGCCC------CSEEEEEECSSCSCHHHHHHHHHTTCEEEECCSSCCC
T ss_pred cCCCCCCccccc------CCcEEEEECCCCCCHHHHHHHHhhCCeEEEECCcchH
Confidence 999998865322 5667777767898777 777788999999998774
No 13
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=90.99 E-value=0.16 Score=42.28 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=89.9
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHc-CCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHH-HHHHHHHHhhc
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEK-KQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPI-EDTITAIKKNI 78 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~-g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi-~~al~~~~~~~ 78 (246)
|+|.|+++= ..-+.|+..++=.=+-+- ....++++.+.|-...+. . ..+-+ .+.=+.+.+..
T Consensus 1 Mki~ii~VG-k~k~~~~~~~i~eY~kRl~~~~~~e~~ev~~~~~~~~-----------~----~~~~~~~~E~~~il~~i 64 (155)
T 1ns5_A 1 MKLQLVAVG-TKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKN-----------A----DIKRILDKEGEQMLAAA 64 (155)
T ss_dssp CCEEEEEEC-SCCCHHHHHHHHHHHTTSCTTSCEEEEEECCCCCCTT-----------C----CHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEe-ccCcHHHHHHHHHHHHHcCccCCceEEEecCCcCccc-----------c----cHHHHHHHHHHHHHHhc
Confidence 888888873 333445555554433332 257888888887665431 1 11111 11111111111
Q ss_pred CCCCcEEEeCCCCCccC-HHHHHHHhcC----CCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHH
Q psy3767 79 KKIPKIIYMSPQGKKLT-HNIIIKLLKE----SNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIV 153 (246)
Q Consensus 79 ~~~~~vI~lsP~G~~~~-Q~~a~~La~~----~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~ 153 (246)
+ +..||.|.+.|+.+| .+.|..|.+. .+++|+-|==.|+|+.+.+ -.|+-+|+|...++= +++-+++++-+-
T Consensus 65 ~-~~~vi~Ld~~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGG~~Gl~~~v~~-rA~~~lSlS~mT~pH-ql~RliL~EQiY 141 (155)
T 1ns5_A 65 G-KNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKA-AAEQSWSLSALTLPH-PLVRVLVAESLY 141 (155)
T ss_dssp T-TSEEEEEEEEEECCCHHHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHH-HCSEEECCCSSCCCH-HHHHHHHHHHHH
T ss_pred C-CCcEEEEcCCCCcCCHHHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHH-hhCceEEccCCCCcH-HHHHHHHHHHHH
Confidence 2 237999999999998 4567666543 6899999999999999997 689999999998874 688888888777
Q ss_pred Hh
Q psy3767 154 RL 155 (246)
Q Consensus 154 Rl 155 (246)
|-
T Consensus 142 RA 143 (155)
T 1ns5_A 142 RA 143 (155)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 14
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=88.61 E-value=0.21 Score=43.15 Aligned_cols=102 Identities=16% Similarity=0.293 Sum_probs=73.0
Q ss_pred ecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEE
Q psy3767 7 TLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIY 86 (246)
Q Consensus 7 TlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~ 86 (246)
.+-|+.=. -.|+|.+|+++. .-..|-++-|||-++-.-+.+.|+++... .+++|
T Consensus 76 ~v~PdeR~---~~gli~kaL~~~-------------------~~~~~~~~~pgi~v~~~sle~ll~e~~~~----~~v~~ 129 (197)
T 2qmm_A 76 RMSPDERN---VAGHIKKALAVE-------------------CGKSWKKVHSGVYVSRKGLEELIEELSEK----YSIIY 129 (197)
T ss_dssp SCCSSHHH---HHHHHHHHHHSC-------------------CCSSCEEEETTEEEECCCHHHHHHHHHHH----SEEEE
T ss_pred EcChhHHH---HHHHHHHHHHhc-------------------cCcccCCCCCCEEEECCCHHHHHHHhhcC----CcEEE
Confidence 34566542 348999999871 11235666799999999999999888643 35999
Q ss_pred eCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHh---hhccccceeeeecceeec
Q psy3767 87 MSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQR---FLDNFIDEEISVGDFILS 139 (246)
Q Consensus 87 lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeR---v~~~~vdeeiSIGDyVLs 139 (246)
|...|+.+.... + ..+.+||-|=--|+.+. .++...++.+|||...|.
T Consensus 130 L~E~G~~i~~~~---~--~~~~~fvlGdH~~f~~e~~~~l~~~~~~~iSigp~~L~ 180 (197)
T 2qmm_A 130 LKEDGVDISNAQ---L--PPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPLSLL 180 (197)
T ss_dssp EEEEEEEGGGSC---C--CSSEEEEEECTTCCCHHHHHHHHTTCSEEEECCSSCCC
T ss_pred EcCCCCCCchhh---c--CCCCEEEEeCCCCCCHHHHHHHHHhcCeEEEECCchhH
Confidence 999999886532 2 24666666667888666 344578899999998775
No 15
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*
Probab=43.02 E-value=8.8 Score=33.30 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcch-hhHhhhcccccee--eeecceeec
Q psy3767 63 LGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQA-IDQRFLDNFIDEE--ISVGDFILS 139 (246)
Q Consensus 63 ~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEG-iDeRv~~~~vdee--iSIGDyVLs 139 (246)
...|+.+-+.... ..++|.||++|++.+-. +++.. +.++|.|-=.| +++-+. .++++. +||+||-||
T Consensus 122 ik~~l~~~lp~~~-----~~~~i~ls~~g~~v~~~---~~~~~-~~~~IGaf~~G~~~~~~~-~~~~~~~~isIs~~pLs 191 (205)
T 3bbd_A 122 EEKTLEDLLNEIN-----AKKIAIMTKTGKLTHPK---LLKEY-DTFIIGGFPYGKLKINKE-KVFGDIKEISIYNKGLM 191 (205)
T ss_dssp EECCHHHHHHHTT-----CCEEEEEEEEEEECCGG---GGGGC-SEEEEECSSSSCCCCCGG-GCSSEEEEEESSSSCCC
T ss_pred EcCCHHHhcCCCC-----CceEEEEcCCCcccCHH---HHhCC-CEEEEccccCCCcchhhh-hhhccccEEEEeCCChh
Confidence 3456665554321 25899999999987643 22222 35555542222 333444 388888 999999998
Q ss_pred C
Q psy3767 140 G 140 (246)
Q Consensus 140 G 140 (246)
.
T Consensus 192 a 192 (205)
T 3bbd_A 192 A 192 (205)
T ss_dssp H
T ss_pred H
Confidence 5
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=42.35 E-value=51 Score=28.08 Aligned_cols=138 Identities=13% Similarity=0.211 Sum_probs=81.8
Q ss_pred HHhhhHHHHHHHc-CCeEEEEEccCCCCCCCCcc-cCC--CCCCCCC--------CcccccHHHHHHHHHHHhhcCCCCc
Q psy3767 16 ITQSGITRRAFEK-KQYSLNLWNPRNFSSNNYRK-IDD--YPYGGGV--------GMIMLGKPIEDTITAIKKNIKKIPK 83 (246)
Q Consensus 16 ~~~~si~~rA~~~-g~~~i~~~n~Rdf~~dkh~~-VDD--~pyGGG~--------GMvm~~ePi~~al~~~~~~~~~~~~ 83 (246)
-++.|=+.||.+. |+=++.++||+......=+. ..- .-+|.-. ..+--.+-+.+|++.+.+..+++|.
T Consensus 28 n~dihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~~~~~~g~~p~ 107 (192)
T 3dcm_X 28 NLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPL 107 (192)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHHHHHHHSSCCE
T ss_pred cccHHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHHHHhhcCCccE
Confidence 3567778888764 89999999999742210000 000 0122210 2233345578888888654455788
Q ss_pred EEEeCCC--CCccCHHHHHHHh--cCCCeEEEccCcchhhHhhhccccceeeeecceee----cCCchhHHHHHHHHHHh
Q psy3767 84 IIYMSPQ--GKKLTHNIIIKLL--KESNLILLCGRYQAIDQRFLDNFIDEEISVGDFIL----SGGELPAMMLIDAIVRL 155 (246)
Q Consensus 84 vI~lsP~--G~~~~Q~~a~~La--~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVL----sGGElaAmvliDav~Rl 155 (246)
||-+|.+ ...++-..+++.. .+..+.|+-||=- -+-+||+..=||+| +.+|.+.|-+--||.=+
T Consensus 108 vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~~~--------GLtneel~~cd~~l~~Ip~~~eY~~Lnl~~AVaIi 179 (192)
T 3dcm_X 108 IFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGW--------GLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAII 179 (192)
T ss_dssp EEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECCTT--------CCCHHHHTTCSEEBCCTTTTSSCCCCCHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECCCC--------CCCHHHHHhcCEEEccCCCCCCCCccCHHHHHHHH
Confidence 9999976 3466666555543 4567889999822 35677777888888 34555555555555433
Q ss_pred cccccC
Q psy3767 156 LPKVLN 161 (246)
Q Consensus 156 iPGvLg 161 (246)
+.=.+|
T Consensus 180 Ldrl~g 185 (192)
T 3dcm_X 180 IDRLIG 185 (192)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 333344
No 17
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}
Probab=41.52 E-value=12 Score=33.51 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=36.5
Q ss_pred cEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcch-hhHhhhcccc--ceeeeecceeecCC
Q psy3767 83 KIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQA-IDQRFLDNFI--DEEISVGDFILSGG 141 (246)
Q Consensus 83 ~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEG-iDeRv~~~~v--deeiSIGDyVLsGG 141 (246)
++|.||..|++.+ .+++++.-..++|-|==.| +++-+.+ .. ++.+||++|-||+-
T Consensus 168 ~~I~lS~~G~~v~---~~~~~~~~~~~vIGafphGdf~~~~~~-~~~~~~~iSIs~~pLsa~ 225 (244)
T 3o7b_A 168 DVLLFREKGGRFE---FSELLDGDVAVCIGAFPHGDFFEETLR-ELGEFKEVSLGTESYTSL 225 (244)
T ss_dssp EEEEEEEEEECCC---HHHHTSSSEEEEEECSSSSCCCHHHHH-HHCSEEEECCCSSCCCHH
T ss_pred cEEEEccCCCcCC---HHHHhhcCCEEEECcccCCCccHhhhh-hccCccEEEEeCCChHHH
Confidence 8999999999875 4566654444444433334 3444544 34 78999999999853
No 18
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=38.94 E-value=42 Score=26.03 Aligned_cols=89 Identities=10% Similarity=-0.011 Sum_probs=58.1
Q ss_pred hhhHHHHHHHcCCeEEEEEccCCCC---CCCCcccCCCCCCCCCCcccccHHHHHH---HHHHHhhcCCCCcEEEeCCCC
Q psy3767 18 QSGITRRAFEKKQYSLNLWNPRNFS---SNNYRKIDDYPYGGGVGMIMLGKPIEDT---ITAIKKNIKKIPKIIYMSPQG 91 (246)
Q Consensus 18 ~~si~~rA~~~g~~~i~~~n~Rdf~---~dkh~~VDD~pyGGG~GMvm~~ePi~~a---l~~~~~~~~~~~~vI~lsP~G 91 (246)
.+-++..-++.|. .+..+|++.=. ..-|.+++|-|- +=++.=.-|-... ++++.+. +.+.|.++|-
T Consensus 20 g~~v~~~L~~~g~-~V~pVnP~~~~i~G~~~y~sl~dlp~---vDlavi~~p~~~v~~~v~e~~~~---g~k~v~~~~G- 91 (122)
T 3ff4_A 20 AYLAAERLKSHGH-EFIPVGRKKGEVLGKTIINERPVIEG---VDTVTLYINPQNQLSEYNYILSL---KPKRVIFNPG- 91 (122)
T ss_dssp HHHHHHHHHHHTC-CEEEESSSCSEETTEECBCSCCCCTT---CCEEEECSCHHHHGGGHHHHHHH---CCSEEEECTT-
T ss_pred HHHHHHHHHHCCC-eEEEECCCCCcCCCeeccCChHHCCC---CCEEEEEeCHHHHHHHHHHHHhc---CCCEEEECCC-
Confidence 4566777777787 99999998422 134889999993 8887755544444 4444333 3456678875
Q ss_pred CccCHHHHHHHhcCCCeEEEccCcch
Q psy3767 92 KKLTHNIIIKLLKESNLILLCGRYQA 117 (246)
Q Consensus 92 ~~~~Q~~a~~La~~~~lvliCGrYEG 117 (246)
|.|+.+.++|++..+-++ |.==|
T Consensus 92 --~~~~e~~~~a~~~Girvv-~nC~g 114 (122)
T 3ff4_A 92 --TENEELEEILSENGIEPV-IGCTL 114 (122)
T ss_dssp --CCCHHHHHHHHHTTCEEE-ESCHH
T ss_pred --CChHHHHHHHHHcCCeEE-CCcCe
Confidence 456777788877777666 54333
No 19
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=35.36 E-value=6.9 Score=30.72 Aligned_cols=26 Identities=15% Similarity=0.471 Sum_probs=19.2
Q ss_pred CcchhhHhhhccccceeeeecceeec
Q psy3767 114 RYQAIDQRFLDNFIDEEISVGDFILS 139 (246)
Q Consensus 114 rYEGiDeRv~~~~vdeeiSIGDyVLs 139 (246)
-+-|+=.+|--.++++++.+|||||.
T Consensus 43 d~~Gv~reV~l~Lv~e~~~vGDyVLV 68 (103)
T 3d3r_A 43 DTLGVRRDVSSHLMTEPLAIGDYVLI 68 (103)
T ss_dssp EETTEEEEEECTTBSSCCCTTCEEEE
T ss_pred EcCCEEEEEEEEeecCCCCCCCEEEE
Confidence 34466666666678778999999985
No 20
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=24.38 E-value=33 Score=27.46 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=15.4
Q ss_pred EEccCCCCCC-CCcccCCCCCCCC
Q psy3767 35 LWNPRNFSSN-NYRKIDDYPYGGG 57 (246)
Q Consensus 35 ~~n~Rdf~~d-kh~~VDD~pyGGG 57 (246)
+.=+++|+.+ .|..|+| |||||
T Consensus 107 v~~l~~~~~~~~~~~I~D-P~~~~ 129 (156)
T 2gi4_A 107 VLKITDFSPSLNYDEVPD-PWYSG 129 (156)
T ss_dssp EECTTTTCSSCCCCSSCH-HHHTS
T ss_pred EEEehhhcCCCCCCCCCC-CCCCC
Confidence 5667888865 4678888 56565
No 21
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=24.05 E-value=1.8e+02 Score=27.42 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=43.8
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCcc----C-----HHHHHHHhc--CCCeEEEccCcch
Q psy3767 53 PYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKL----T-----HNIIIKLLK--ESNLILLCGRYQA 117 (246)
Q Consensus 53 pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~----~-----Q~~a~~La~--~~~lvliCGrYEG 117 (246)
|.-. |-+....=|.+|+-.++....++++||++|-+|+|. + +..|++|++ ..++.|+.-=.+|
T Consensus 25 P~~~--g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRP~kG~~~~~~SL~pva~~L~~lLg~~V~f~~d~~~G 98 (387)
T 1zmr_A 25 PVKD--GKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG 98 (387)
T ss_dssp CEET--TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHHHHHHHCSSCEEEESCCTTC
T ss_pred cccC--CccCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCCCCCcCCccCHHHHHHHHHHHhCCCCEECcccccC
Confidence 5543 578888888998887765433367999999999992 2 345777776 4678887643335
No 22
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=22.61 E-value=1.4e+02 Score=23.81 Aligned_cols=127 Identities=14% Similarity=0.197 Sum_probs=78.4
Q ss_pred HHHhhhHHHHHHH-cCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcc-----cccHHHHHHHHHHHhhcCCCCcEEEeC
Q psy3767 15 AITQSGITRRAFE-KKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMI-----MLGKPIEDTITAIKKNIKKIPKIIYMS 88 (246)
Q Consensus 15 ~~~~~si~~rA~~-~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMv-----m~~ePi~~al~~~~~~~~~~~~vI~ls 88 (246)
.+-+.|-+-|+.+ -|. +..+++.+.|..+..+ +- =.|.|-. ...+-+.++++.+++...++.+++.+|
T Consensus 14 dp~NlGaI~Rta~a~G~-~~viv~~~~~~~~~~~-~~----ras~g~~~~~~~~~~~~l~~~l~~lk~~~~~g~~i~~~~ 87 (165)
T 3n4j_A 14 IPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKR-LR----RAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALT 87 (165)
T ss_dssp CHHHHHHHHHHHHHHTC-EEEEESCCSSCCCHHH-HH----HTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTTEEEEC
T ss_pred CCCcHHHHHHHHHHcCC-eEEEECCCCCCCccHH-HH----HhccCceeecCeEEeCCHHHHHHHHHhhccCCCEEEEEE
Confidence 3456666666554 566 9999998866443111 11 1255532 233557778877754111245799998
Q ss_pred CCCC-ccCHHHHHHHhcCCCeEEEccC-cchhhHhhhccc-cceeeeecceeecCC------chhHHHHHHHHHHh
Q psy3767 89 PQGK-KLTHNIIIKLLKESNLILLCGR-YQAIDQRFLDNF-IDEEISVGDFILSGG------ELPAMMLIDAIVRL 155 (246)
Q Consensus 89 P~G~-~~~Q~~a~~La~~~~lvliCGr-YEGiDeRv~~~~-vdeeiSIGDyVLsGG------ElaAmvliDav~Rl 155 (246)
+.|. .+.+ +.-.+..+||-|+ =.|+.+-+++.. .|.-++|== .|+ ..||.+++.-+.|.
T Consensus 88 ~~~~~~~~~-----~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm---~g~~~SLNvavAaaI~lye~~rq 155 (165)
T 3n4j_A 88 TKGTPAHSA-----VSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPM---QADSRSMNLSNAVSVVVYEAWRQ 155 (165)
T ss_dssp TTCSSBTTT-----SCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCC---CTTCCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCcchhh-----ccCCCCeEEEECCCCCCCCHHHHhhccCCeEEEECC---CCCCceeeHHHHHHHHHHHHHHh
Confidence 8774 4443 2234578899998 789999999843 688777742 233 35677777777775
No 23
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.34 E-value=1.9e+02 Score=22.32 Aligned_cols=72 Identities=8% Similarity=-0.046 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhc--CCCeEEEccCcchhhHhhhccccceeeee--cceeecCCchhHHHHHHHHHHhc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLK--ESNLILLCGRYQAIDQRFLDNFIDEEISV--GDFILSGGELPAMMLIDAIVRLL 156 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~--~~~lvliCGrYEGiDeRv~~~~vdeeiSI--GDyVLsGGElaAmvliDav~Rli 156 (246)
+.-+|..|-.|+.-+--.+-+.|+ .-.++.|++...+-=.+ +.|..+.+ ++.-....-++.|+++|++.-.+
T Consensus 88 ~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~----~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~ 163 (187)
T 3sho_A 88 TDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPAR----IADHVLVAATRGVGHSLSPVGLIAVVNLLLAEI 163 (187)
T ss_dssp TEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHH----HCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchh----hCcEEEEecCCCCcccccHhHHHHHHHHHHHHH
Confidence 446888999998655545555554 35788888876553333 33333322 22223455789999999987654
No 24
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=21.69 E-value=35 Score=24.60 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=16.4
Q ss_pred cEEEeCCCCCccCH--HHHHHHhc
Q psy3767 83 KIIYMSPQGKKLTH--NIIIKLLK 104 (246)
Q Consensus 83 ~vI~lsP~G~~~~Q--~~a~~La~ 104 (246)
-|.|.||.|++|-. ++++=|..
T Consensus 27 DvyY~sP~Gkk~RSk~ev~~yL~~ 50 (69)
T 3vxv_A 27 DVYFISPQGLKFRSKRSLANYLLK 50 (69)
T ss_dssp EEEEECTTSCEECSHHHHHHHHHH
T ss_pred eEEEEcCCCCEeeCHHHHHHHHHh
Confidence 59999999999975 44544433
No 25
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=20.51 E-value=26 Score=32.94 Aligned_cols=33 Identities=24% Similarity=0.624 Sum_probs=24.7
Q ss_pred CCCeEE-EccCcc--hhhHhhhccccceeeeecceeecC
Q psy3767 105 ESNLIL-LCGRYQ--AIDQRFLDNFIDEEISVGDFILSG 140 (246)
Q Consensus 105 ~~~lvl-iCGrYE--GiDeRv~~~~vdeeiSIGDyVLsG 140 (246)
+++|+| +|=||+ |+||++-+ ..+|.||+=.++-
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 377 (390)
T 3uoa_B 342 KEHLVFTVCLSYQYSGLEDTVED---KQEVNVGKPLIAK 377 (390)
T ss_dssp CSCCEEEEEEEEEETTCCCCEEE---EEEEECCSCGGGG
T ss_pred hhcEEEEEEEEEecCCccchhhh---ceeeccCCcceec
Confidence 456665 799998 99998765 4689999866553
No 26
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=20.40 E-value=32 Score=30.02 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=59.3
Q ss_pred hhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCHHH
Q psy3767 19 SGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNI 98 (246)
Q Consensus 19 ~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~ 98 (246)
-++++||++++... .....-.--||.-.+-.-+.+.|+.+... .+++||...|+.+....
T Consensus 91 a~lI~kAL~~~~~~----------------~~~~~~~~~pGi~v~~~~fe~ll~e~~~~----~~ly~L~e~G~di~~~~ 150 (208)
T 2qwv_A 91 IALLVKALDASVGM----------------GKEQTRVVQPGLTVRTISFEALLGELAEH----HSLYMMDKKGDSIRDIK 150 (208)
T ss_dssp HHHHHHHHHHTTTC----------------CTTCEEEEETTEEEECCCHHHHHHHHHTT----SEEEEEEEEEEETTTSC
T ss_pred HHHHHHHHHhcccc----------------ccccccccCCCEEEecCCHHHHHHHHHhc----CcEEEEeCCCcCHhhcc
Confidence 36788999875300 11122233467777766677777777542 45999999999886532
Q ss_pred HHHHhcCCCeEEEccCcchhh---Hhhhccccceeeeecceee
Q psy3767 99 IIKLLKESNLILLCGRYQAID---QRFLDNFIDEEISVGDFIL 138 (246)
Q Consensus 99 a~~La~~~~lvliCGrYEGiD---eRv~~~~vdeeiSIGDyVL 138 (246)
-..+.+||-|--.|+. |..++...++-||+|=-.|
T Consensus 151 -----~~~~~~FvLgDH~g~~~eee~~L~~~~~~~iSlGP~~l 188 (208)
T 2qwv_A 151 -----IGPNPCFILTDHIPMPKKSGNSMKRLGVEKISLGPKML 188 (208)
T ss_dssp -----CCSSEEEEECC----------CTTTTTCEEEECCSSCC
T ss_pred -----CCCCCEEEEcCCCCCCHHHHHHHHhcCCeEEEeCchHH
Confidence 1268999999999984 4466666778899985544
No 27
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=20.29 E-value=38 Score=28.53 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=14.3
Q ss_pred ceeeeecceeecCCchh
Q psy3767 128 DEEISVGDFILSGGELP 144 (246)
Q Consensus 128 deeiSIGDyVLsGGEla 144 (246)
...|++|||||.-|+=+
T Consensus 36 ~~~i~vGd~VLI~~~D~ 52 (163)
T 4dov_A 36 EIHIKVGQFVLIQGEDN 52 (163)
T ss_dssp EEEEETTCEEEECCSSS
T ss_pred CeEEeeCCEEEEeCCcc
Confidence 56899999999988754
No 28
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=20.27 E-value=1e+02 Score=25.19 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=15.0
Q ss_pred EEccCCCCCCCCcccCCCCCCCC
Q psy3767 35 LWNPRNFSSNNYRKIDDYPYGGG 57 (246)
Q Consensus 35 ~~n~Rdf~~dkh~~VDD~pyGGG 57 (246)
++-+++|+. .+..|+| ||||+
T Consensus 138 v~~l~~~~~-~~~dI~D-Py~~~ 158 (180)
T 4egs_A 138 IFTIKEFVG-LEGDVED-PYGMP 158 (180)
T ss_dssp EEETTTTTT-CCSCCCC-CTTCC
T ss_pred eeehhhccc-cCCCCCC-CCCCC
Confidence 456888874 3567888 68876
Done!