Query psy3767
Match_columns 246
No_of_seqs 103 out of 1049
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 16:45:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3767.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3767hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uala_ c.116.1.4 (A:) tRNA(m1 100.0 1E-120 9E-125 814.8 20.4 241 1-245 3-244 (252)
2 d1oy5a_ c.116.1.4 (A:) tRNA(m1 100.0 6E-116 4E-120 776.9 13.5 222 1-226 3-225 (232)
3 d2v3ka1 c.116.1.6 (A:25-251) E 99.4 4.4E-14 3.2E-18 122.7 3.1 59 81-139 150-209 (227)
4 d1o6da_ c.116.1.3 (A:) Hypothe 97.1 0.0036 2.6E-07 49.0 11.7 131 1-155 1-140 (147)
5 d1vh0a_ c.116.1.3 (A:) Hypothe 95.8 0.005 3.6E-07 48.4 4.9 137 1-155 1-148 (157)
6 d1ns5a_ c.116.1.3 (A:) Hypothe 93.8 0.026 1.9E-06 44.0 4.3 137 1-155 1-143 (153)
7 d1to0a_ c.116.1.3 (A:) Hypothe 93.1 0.057 4.1E-06 42.1 5.2 139 1-155 1-148 (157)
8 d1gvha3 c.25.1.5 (A:254-396) F 76.8 3.4 0.00025 29.6 6.6 57 49-110 4-67 (143)
9 d3d3ra1 b.40.14.1 (A:1-76) Hyd 68.8 0.41 3E-05 33.9 -0.3 25 115-139 23-47 (76)
10 d2qmma1 c.116.1.7 (A:95-288) U 59.9 3.5 0.00025 33.4 3.7 73 58-139 102-177 (194)
11 d1dg9a_ c.44.1.1 (A:) Tyrosine 52.1 3.3 0.00024 30.4 2.2 26 33-59 111-136 (157)
12 d2jfga2 c.59.1.1 (A:298-437) U 45.6 9.2 0.00067 28.4 3.9 32 64-96 90-121 (140)
13 d1t0ia_ c.23.5.4 (A:) Hypothet 38.9 56 0.0041 24.3 7.7 86 1-90 1-94 (185)
14 d2z1ca1 b.40.14.1 (A:2-72) Hyd 38.1 2.6 0.00019 29.1 -0.4 26 114-140 19-44 (71)
15 d2ot2a1 b.40.14.1 (A:1-90) Hyd 35.7 4.8 0.00035 28.9 0.7 27 114-140 20-51 (90)
16 d2piaa2 c.25.1.2 (A:104-223) P 35.0 27 0.002 23.6 4.8 98 52-159 12-112 (120)
17 d2qwva1 c.116.1.7 (A:5-205) Un 32.6 12 0.0009 30.2 2.8 73 58-139 107-182 (201)
18 d1iaya_ c.67.1.4 (A:) 1-aminoc 29.6 50 0.0036 27.3 6.4 54 58-112 166-226 (428)
19 d1prtf_ b.40.2.1 (F:) Pertussi 24.9 16 0.0011 26.1 1.9 37 12-63 51-87 (98)
20 d1pj3a1 c.2.1.7 (A:280-573) Mi 24.8 43 0.0031 28.2 5.1 43 67-114 98-142 (294)
21 d2d59a1 c.2.1.8 (A:4-142) Hypo 24.6 95 0.007 22.5 6.6 86 17-111 34-125 (139)
22 d1vpea_ c.86.1.1 (A:) Phosphog 20.9 65 0.0047 28.0 5.6 62 49-112 19-91 (398)
23 d1v2xa_ c.116.1.1 (A:) tRNA (G 20.9 1.5E+02 0.011 22.1 7.3 105 14-133 31-142 (191)
24 d1phpa_ c.86.1.1 (A:) Phosphog 20.8 97 0.0071 26.7 6.8 61 49-111 20-91 (394)
No 1
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=100.00 E-value=1.3e-120 Score=814.79 Aligned_cols=241 Identities=45% Similarity=0.837 Sum_probs=226.7
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|||||||||++++++||+|||+++|+|++++||||||+.|||++|||+||||||||||||||+++|+++++....+
T Consensus 3 M~i~IiTLFPe~f~~~l~~sIigrA~~~~lv~i~~~nlRdfs~dkhr~VDD~PyGGGpGMVmk~ePl~~ai~~~~~~~~~ 82 (252)
T d1uala_ 3 MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGE 82 (252)
T ss_dssp EEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHHHCT
T ss_pred cEEEEEEEChhhhhhhhhccHHHHHHHCCceEEEEEChhhhCCCCCcCcCCCcCCCCCcceeechhHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765344
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
+++||||||||++|||++|++||++++|+|||||||||||||+++++|+|||||||||||||+|||||||||+||+||||
T Consensus 83 ~~~vI~lSP~Gk~f~Q~~a~~ls~~~~liliCGrYEGiDeRv~~~~~d~eiSiGDyVLsGGEl~A~v~idai~Rl~PGvl 162 (252)
T d1uala_ 83 GAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL 162 (252)
T ss_dssp TCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTTCC
T ss_pred CCcEEEECCCCCchhhHHHHHhhccccEEEEeccchhHhHHHHHhhcceeeecccEEEeccchHHhhhHHHHHHHhcCcc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHHHH
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF 239 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~~~ 239 (246)
||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+++|||||+++.+ +++++++
T Consensus 163 g~~~S~~~eSF~~~lLe~P~YTrP~~~~g~~VPeVLlSG~H~~I~~Wr~~~sl~~T~~~RPDL~~~~~l----~~~~~~~ 238 (252)
T d1uala_ 163 GKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLAL----TDEQRKL 238 (252)
T ss_dssp ---------CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCC----CHHHHHH
T ss_pred CCccccccccccCCCcCCccccCccccCCCCCCcchhCCChHHHHHHHHHHHHHHHHHHChHHHHhcCC----CHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999999999988 9999999
Q ss_pred HHHHhh
Q psy3767 240 LKKINK 245 (246)
Q Consensus 240 l~~~~~ 245 (246)
|++++.
T Consensus 239 l~~~~~ 244 (252)
T d1uala_ 239 LKEAQA 244 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 2
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00 E-value=6e-116 Score=776.86 Aligned_cols=222 Identities=40% Similarity=0.717 Sum_probs=201.2
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK 80 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~ 80 (246)
|+|+|||||||||++++++||+|||+++|+|++++|||||||++ ++|||+||||||||||||||+++||++++...+
T Consensus 3 Mki~IiTLFPe~f~~~l~~siigrA~~~g~i~i~~~nlRdfs~~--k~VDD~PyGGGpGMVm~~ePl~~Ai~~~~~~~~- 79 (232)
T d1oy5a_ 3 LRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPK--GQVDDVPYGGLPGMVLKPEPIYEAYDYVVENYG- 79 (232)
T ss_dssp EEEEEEESCHHHHHHHTTSHHHHHHHHHTSEEEEEEEGGGGCTT--SCCEECBSSCCSSCEECHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhhhhhhhhccHHHHHHHcCceEEEEechhHhCCC--CCcCccccCCCCceEEehhHHHHHHHHHhhhcc-
Confidence 89999999999999999999999999999999999999999964 569999999999999999999999999876533
Q ss_pred CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767 81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL 160 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL 160 (246)
+++||||||||++|||++|++||++++|||||||||||||||.+ ++|+|||||||||||||+|||||||||+|||||||
T Consensus 80 ~~~vI~lSP~G~~~~Q~~a~~ls~~~~liliCGRYEGiDeRv~~-~~d~EiSiGDyVLsGGElaA~v~iDai~RllpGvl 158 (232)
T d1oy5a_ 80 KPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKK-IVDMEISLGDFILSGGEIVALAVIDAVSRVLPGVL 158 (232)
T ss_dssp CCEEEEECTTBCCCCHHHHHHHHTCSEEEEEECBTTCBCGGGGG-GCCEECCBCSSCCSBSHHHHHHHHHHHHHTSTTTS
T ss_pred CCceEeechhhcccchhhhhhhhcCCcEEEEecccccHhhHhhc-CCceEEEeccEEEeCCcchhhhHHHHHHHHhcccc
Confidence 57899999999999999999999999999999999999999876 78999999999999999999999999999999999
Q ss_pred CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhh
Q psy3767 161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKA 226 (246)
Q Consensus 161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~ 226 (246)
||++|+ +|||++|||||||||||++|+|++||||||||||++|++||+++|+++|+++|||||++.
T Consensus 159 g~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VPevLlsGnH~~I~~Wr~~~s~~~T~~~RPDLl~~~ 225 (232)
T d1oy5a_ 159 SEPQSIQEDSFQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPKD 225 (232)
T ss_dssp SCC--------------CCCCBSCSEETTEECCGGGTSCSSSTTTHHHHHHHTTTGGGSCSSCSTTG
T ss_pred CCccccccchhhcCccccceeccccccCCCcCCHHHcCCCHHHHHHHHHHHHHHHHHhhChHHHHhh
Confidence 999999 999999999999999999999999999999999999999999999999999999999874
No 3
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=99.39 E-value=4.4e-14 Score=122.65 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=56.1
Q ss_pred CCcEEEeCCCCCccC-HHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeec
Q psy3767 81 IPKIIYMSPQGKKLT-HNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILS 139 (246)
Q Consensus 81 ~~~vI~lsP~G~~~~-Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLs 139 (246)
+.++|+|||+|++++ |+.|++++...+++|+||+|+|.|+|+.+.|+|++||||||+||
T Consensus 150 ~~k~I~LS~~G~~~~~~~l~~~l~~~~~v~~viG~f~~GD~~~~~~yide~ISIsdypLS 209 (227)
T d2v3ka1 150 KCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLS 209 (227)
T ss_dssp SEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSSCSCTTTTTCSEEEBSCSSCCC
T ss_pred CCeEEEECCCCCccCHHHHHHHhccCCCEEEEEeeecCCCccccccccceEEEEeCcchh
Confidence 568999999999999 67899999999999999999999999998999999999999998
No 4
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=97.06 E-value=0.0036 Score=49.01 Aligned_cols=131 Identities=9% Similarity=0.207 Sum_probs=92.4
Q ss_pred CEEEEEecCccccHHHHhhhHH---HHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHH-HHHHHHh
Q psy3767 1 MQFDVITLFPEMFSAITQSGIT---RRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIED-TITAIKK 76 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~---~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~-al~~~~~ 76 (246)
|||.|+++= -+ +.+...++= +|- +..+.++++++.+- ++. ..+.+.+ --+.+..
T Consensus 1 Mki~Ii~iG-K~-~~~~~~~i~~Y~kRl--~~~~~~~iielk~~---~~~---------------~~~~~~~~E~~~il~ 58 (147)
T d1o6da_ 1 LRVRIAVIG-KL-DGFIKEGIKHYEKFL--RRFCKPEVLEIKRV---HRG---------------SIEEIVRKETEDLTN 58 (147)
T ss_dssp CEEEEEEES-CC-CHHHHHHHHHHHHHH--TTTCEEEEEEECCC---CCS---------------CHHHHHHHHHHHHHT
T ss_pred CEEEEEEEe-Cc-CHHHHHHHHHHHHHh--cCCCCceEEEeccc---cCC---------------CHHHHHHHHHHHHhc
Confidence 999999984 44 778777763 332 34578888888532 111 1122211 1122222
Q ss_pred hcCCCCcEEEeCCCCCccC-HHHHHHHhc----CCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHH
Q psy3767 77 NIKKIPKIIYMSPQGKKLT-HNIIIKLLK----ESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDA 151 (246)
Q Consensus 77 ~~~~~~~vI~lsP~G~~~~-Q~~a~~La~----~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDa 151 (246)
..+++..+|.|.+.|+.+| .+.|+.|.+ .++++|+-|==+|+++.+.+ -+|+.+|+|+..++ =++|.+++++-
T Consensus 59 ~i~~~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~i~FiIGGa~Gl~~~~~~-~a~~~lSls~mT~p-H~l~rv~l~EQ 136 (147)
T d1o6da_ 59 RILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFA-KAHRVFSLSKMTFT-HGMTVLIVLEQ 136 (147)
T ss_dssp TCCTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGG-GCSEEEECCSSCCC-HHHHHHHHHHH
T ss_pred cCCCCCEEEEEecccCCcCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH-hcCcEEeCCcCcch-HHHHHHHHHHH
Confidence 2233568999999999998 456665533 46899999999999999998 68999999999998 48999999999
Q ss_pred HHHh
Q psy3767 152 IVRL 155 (246)
Q Consensus 152 v~Rl 155 (246)
+-|-
T Consensus 137 lYRa 140 (147)
T d1o6da_ 137 IFRA 140 (147)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8884
No 5
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=95.76 E-value=0.005 Score=48.44 Aligned_cols=137 Identities=12% Similarity=0.201 Sum_probs=91.0
Q ss_pred CEEEEEecCccccHHHHhhh---HHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHH--HHHHHHHH
Q psy3767 1 MQFDVITLFPEMFSAITQSG---ITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPI--EDTITAIK 75 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~s---i~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi--~~al~~~~ 75 (246)
|||.|+++=--. ..+...+ -.+|- +..+.++++.+.+-...++.+- -..+-+ ..+ +.+.
T Consensus 1 MkI~Ii~iGk~k-~~~~~~~i~~Y~kRl--~~~~~i~~~ei~~~k~~~~~~~------------~~~~~~~~~E~-~~il 64 (157)
T d1vh0a_ 1 LKITILAVGKLK-EKYWKQAIAEYEKRL--GPYTKIDIIEVPDEKAPENMSD------------KEIEQVKEKEG-QRIL 64 (157)
T ss_dssp CEEEEEEESCCC-CHHHHHHHHHHHHHH--GGGSEEEEEEECCCCCCSSCCH------------HHHHHHHHHHH-HHHH
T ss_pred CEEEEEEecCcC-CHHHHHHHHHHHHHc--CcccCceEEEcccccCccccch------------hhHHHHHHHHH-HHHH
Confidence 899999982222 1233333 23342 3457888888887655433210 000000 111 1111
Q ss_pred hhcCCCCcEEEeCCCCCccC-HHHHHHHhc-----CCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHH
Q psy3767 76 KNIKKIPKIIYMSPQGKKLT-HNIIIKLLK-----ESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLI 149 (246)
Q Consensus 76 ~~~~~~~~vI~lsP~G~~~~-Q~~a~~La~-----~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvli 149 (246)
....++..+|.|.+.|+.+| ++.|+.|.+ ..+++|+-|==.|+|+.+++ -.|+.||+|+..++= ++|.++++
T Consensus 65 ~~i~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~~~~-~a~~~lSls~mT~pH-~larv~l~ 142 (157)
T d1vh0a_ 65 AKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQ-RSNYALSFSKMTFPH-QMMRVVLI 142 (157)
T ss_dssp HTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHH-HCSEEECSCSSCCCH-HHHHHHHH
T ss_pred HhcCCCCeEEEEecccccCCCHHHHHHHHHHHhhcCCceEEEEcCCCccCHHHHh-hcCCEEECccCCchh-HHHHHHHH
Confidence 11133568999999999998 457766643 46899999999999999997 689999999999987 99999999
Q ss_pred HHHHHh
Q psy3767 150 DAIVRL 155 (246)
Q Consensus 150 Dav~Rl 155 (246)
+-+-|-
T Consensus 143 EQlYRa 148 (157)
T d1vh0a_ 143 EQVYRA 148 (157)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988774
No 6
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=93.84 E-value=0.026 Score=43.96 Aligned_cols=137 Identities=13% Similarity=0.191 Sum_probs=87.4
Q ss_pred CEEEEEecCccccHHHHhhhHHHHHHH-cCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcC
Q psy3767 1 MQFDVITLFPEMFSAITQSGITRRAFE-KKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIK 79 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si~~rA~~-~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~ 79 (246)
|+|.|+++=- .-..+...++=.-.-+ +..+.++++.+.+-...+...+. .-..+.-+.+....+
T Consensus 1 Mki~IiaIGk-~~~~~~~~~i~~Y~KRl~~~~~~~~iei~~~~~~~~~~~~--------------~~~~~E~~~il~~~~ 65 (153)
T d1ns5a_ 1 MKLQLVAVGT-KMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIK--------------RILDKEGEQMLAAAG 65 (153)
T ss_dssp CCEEEEEECS-CCCHHHHHHHHHHHTTSCTTSCEEEEEECCCCCCTTCCHH--------------HHHHHHHHHHHHHHT
T ss_pred CeEEEEEEcC-cCcHHHHHHHHHHHHHcCCcCCeEEEEecCccCCcchhHH--------------HHHHHHHHHHHhhcc
Confidence 8999999831 1223333333221111 23467777777654433321100 111111111211112
Q ss_pred CCCcEEEeCCCCCccC-HHHHHHHhc----CCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHH
Q psy3767 80 KIPKIIYMSPQGKKLT-HNIIIKLLK----ESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVR 154 (246)
Q Consensus 80 ~~~~vI~lsP~G~~~~-Q~~a~~La~----~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~R 154 (246)
+..+|.|.+.|+.+| ++.|+.|.+ ..+++|+-|==+|+++.+++ -.|+-+|+|...++ =++|.+++++-+-|
T Consensus 66 -~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~i~fiIGGa~G~~~~~~~-~a~~~lsls~mT~p-H~lar~~l~EQlYR 142 (153)
T d1ns5a_ 66 -KNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKA-AAEQSWSLSALTLP-HPLVRVLVAESLYR 142 (153)
T ss_dssp -TSEEEEEEEEEECCCHHHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHH-HCSEEECCCSSCCC-HHHHHHHHHHHHHH
T ss_pred -CCeEEEeeccccccChHHHHHHHHHHhhccCcEEEEEEcCCCCCHHHHH-hhCcEEecccCCch-HHHHHHHHHHHHHH
Confidence 357999999999998 456666632 46899999999999999998 68999999999997 48999999998887
Q ss_pred h
Q psy3767 155 L 155 (246)
Q Consensus 155 l 155 (246)
-
T Consensus 143 a 143 (153)
T d1ns5a_ 143 A 143 (153)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=93.11 E-value=0.057 Score=42.10 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=89.3
Q ss_pred CEEEEEecCccccHHHHhhhH---HHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhh
Q psy3767 1 MQFDVITLFPEMFSAITQSGI---TRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKN 77 (246)
Q Consensus 1 M~~~viTlFPe~f~~~~~~si---~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~ 77 (246)
|+|.|+++=--.- .+...++ .+|- +..+.++++++.+-...+..+. ...-.+.+ +--+.+...
T Consensus 1 MkI~Ii~iGk~k~-~~~~~~~~~Y~kRl--~~~~~~~~iei~~~k~~~~~~~------~~~~~~~~-----~E~~~il~~ 66 (157)
T d1to0a_ 1 MNINIVTIGKLKE-KYLKQGIEEYTKRL--SAYAKIDIIELPDEKAPENLSD------QDMKIIKD-----KEGDRILSK 66 (157)
T ss_dssp CEEEEEEESCCCC-HHHHHHHHHHHHHH--TTTSEEEEEEECCCCC---------------CHHHH-----HHHHHHHTT
T ss_pred CEEEEEEecCcCC-HHHHHHHHHHHHHc--CcccCeeEEEecCcccccccch------hHHHHHHH-----HHHHHHHhh
Confidence 9999999853332 2333333 3333 3457888888876543321100 00001111 111112122
Q ss_pred cCCCCcEEEeCCCCCccCH-HHHHHHhc-----CCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHH
Q psy3767 78 IKKIPKIIYMSPQGKKLTH-NIIIKLLK-----ESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDA 151 (246)
Q Consensus 78 ~~~~~~vI~lsP~G~~~~Q-~~a~~La~-----~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDa 151 (246)
..++..+|.|.+.|+.+|- +.|+.|.+ ..+++|+-|==.|+|+.+.+ -.++.||+|+..++ =++|.+++++-
T Consensus 67 i~~~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~FiIGGa~G~~~~~~~-~a~~~~Sls~mT~p-H~l~r~~l~EQ 144 (157)
T d1to0a_ 67 ISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMK-RADEKLSFSKMTFP-HQLMRLILVEQ 144 (157)
T ss_dssp SCTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHH-HCSEEEESCSSCCC-HHHHHHHHHHH
T ss_pred cCCCCeEEEeccchhhhhHHHHHHHHHHHHhcCCcceEEEECCCCCCCHHHHh-hcCcEEecccCCch-HHHHHHHHHHH
Confidence 1335689999999999985 67777742 46799999999999999988 68999999999987 47899999988
Q ss_pred HHHh
Q psy3767 152 IVRL 155 (246)
Q Consensus 152 v~Rl 155 (246)
+-|-
T Consensus 145 iYRa 148 (157)
T d1to0a_ 145 IYRA 148 (157)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8773
No 8
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=76.81 E-value=3.4 Score=29.57 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=39.2
Q ss_pred cCCCC---CCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEe----CCCCCccCHHHHHHHhcCCCeEE
Q psy3767 49 IDDYP---YGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYM----SPQGKKLTHNIIIKLLKESNLIL 110 (246)
Q Consensus 49 VDD~p---yGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~l----sP~G~~~~Q~~a~~La~~~~lvl 110 (246)
-||+| .|||.|+ -|+..-++.+..... ..++.++ ||..-.|-+++....++.+++.+
T Consensus 4 ~~d~plv~IagGtGi----aP~~s~l~~l~~~~~-~~~i~l~~~~r~~~d~~~~~el~~~~~~~~~~~~ 67 (143)
T d1gvha3 4 ADDTPVTLISAGVGQ----TPMLAMLDTLAKAGH-TAQVNWFHAAENGDVHAFADEVKELGQSLPRFTA 67 (143)
T ss_dssp CTTCCEEEEEEGGGG----HHHHHHHHHHHHHTC-CSCEEEEEEESCTTTCCSHHHHHHHHHTSSSEEE
T ss_pred CCCCCEEEEEchhhH----HHHHHHHHHHHHcCC-CceEEEEeecCCHHHHHHHHHHHHHHHhCCceEE
Confidence 36776 5999996 788888888765422 3344444 88888887777776677666543
No 9
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]}
Probab=68.75 E-value=0.41 Score=33.86 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=20.0
Q ss_pred cchhhHhhhccccceeeeecceeec
Q psy3767 115 YQAIDQRFLDNFIDEEISVGDFILS 139 (246)
Q Consensus 115 YEGiDeRv~~~~vdeeiSIGDyVLs 139 (246)
|-|+-.+|--.++++++++|||||.
T Consensus 23 ~~G~~r~v~l~lv~e~v~vGDyVLV 47 (76)
T d3d3ra1 23 TLGVRRDVSSHLMTEPLAIGDYVLI 47 (76)
T ss_dssp ETTEEEEEECTTBSSCCCTTCEEEE
T ss_pred CCCeEEEEEEEeccCCCCCCCEEEE
Confidence 4577777755588889999999996
No 10
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=59.90 E-value=3.5 Score=33.40 Aligned_cols=73 Identities=16% Similarity=0.382 Sum_probs=55.5
Q ss_pred CCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchh---hHhhhccccceeeeec
Q psy3767 58 VGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAI---DQRFLDNFIDEEISVG 134 (246)
Q Consensus 58 ~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGi---DeRv~~~~vdeeiSIG 134 (246)
+|...+-.=+.+.+++.... ..++||.+.|+.+... .-.++.+||-|==.|+ ++..++.+..+.||+|
T Consensus 102 pGI~vs~~~~e~~l~e~~~~----~~~~~Ld~~G~~i~~~-----~~~~~~~FILsDh~~l~~~e~~~L~~~~~~~iSLG 172 (194)
T d2qmma1 102 SGVYVSRKGLEELIEELSEK----YSIIYLKEDGVDISNA-----QLPPNPLFVIGDHEGLTEEQEKVVERYAALKLSLS 172 (194)
T ss_dssp TTEEEECCCHHHHHHHHHHH----SEEEEEEEEEEEGGGS-----CCCSSEEEEEECTTCCCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEeCCCHHHHHHHHhcc----CcEEEECCCCCccccc-----ccCCCCeEEEeCCCCCChHHHHHHhhcCCeeEecc
Confidence 78888877788889887542 4688999999998642 2246788999988888 4466777778899999
Q ss_pred ceeec
Q psy3767 135 DFILS 139 (246)
Q Consensus 135 DyVLs 139 (246)
---|-
T Consensus 173 p~~L~ 177 (194)
T d2qmma1 173 PLSLL 177 (194)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 76553
No 11
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 9913]}
Probab=52.11 E-value=3.3 Score=30.44 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=21.2
Q ss_pred EEEEccCCCCCCCCcccCCCCCCCCCC
Q psy3767 33 LNLWNPRNFSSNNYRKIDDYPYGGGVG 59 (246)
Q Consensus 33 i~~~n~Rdf~~dkh~~VDD~pyGGG~G 59 (246)
-.++-+++|+.+.+.-|+| ||||+.-
T Consensus 111 ~kv~~l~~~~~~~~~~I~D-Py~~~~~ 136 (157)
T d1dg9a_ 111 AKIELLGSYDPQKQLIIED-PYYGNDA 136 (157)
T ss_dssp CEEEEGGGGCTTCCCCCCC-CTTSCHH
T ss_pred heeeehhhhCCCCCCcCCC-CCCCCHH
Confidence 4567789999998888999 7988753
No 12
>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=45.64 E-value=9.2 Score=28.39 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCH
Q psy3767 64 GKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTH 96 (246)
Q Consensus 64 ~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q 96 (246)
.+-+.+|++.+... .++..+|+|||.+--|||
T Consensus 90 ~~~l~~av~~a~~~-~~~g~~VLlSPa~aSfD~ 121 (140)
T d2jfga2 90 TETMEQAMRLLAPR-VQPGDMVLLSPACASLDQ 121 (140)
T ss_dssp CSSHHHHHHHHGGG-CCTTCEEEECCSSBSTTT
T ss_pred HHHHHHHHHHHHHh-cccCCEEEECCCccchhh
Confidence 45577888887654 224569999999999998
No 13
>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.88 E-value=56 Score=24.27 Aligned_cols=86 Identities=9% Similarity=0.044 Sum_probs=42.5
Q ss_pred CEEEEEecCcc--ccHHHHhhhHHHHHHHc-----CCeEEEEEccCCCCCCCCcccCCCCCCCCC-CcccccHHHHHHHH
Q psy3767 1 MQFDVITLFPE--MFSAITQSGITRRAFEK-----KQYSLNLWNPRNFSSNNYRKIDDYPYGGGV-GMIMLGKPIEDTIT 72 (246)
Q Consensus 1 M~~~viTlFPe--~f~~~~~~si~~rA~~~-----g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~-GMvm~~ePi~~al~ 72 (246)
|||-+|.==|- =...-+..-+.+.+.+. .-++++++|++++.-.-+..-+....+... +--..++-+.+..+
T Consensus 1 MKIlvI~GS~R~~s~~~~la~~~~~~l~~~~~~~~~g~~v~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T d1t0ia_ 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (185)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHHHHhhhhcCCCcEEEEEeccccCccccchhhhccccccccccccCCHHHHHHHH
Confidence 77777764442 22223333333333332 236999999998765433222222212111 11223344444445
Q ss_pred HHHhhcCCCCcEEEeCCC
Q psy3767 73 AIKKNIKKIPKIIYMSPQ 90 (246)
Q Consensus 73 ~~~~~~~~~~~vI~lsP~ 90 (246)
.++.. .-+|+-||-
T Consensus 81 ~i~~A----D~iIi~tP~ 94 (185)
T d1t0ia_ 81 IVNAL----DIIVFVTPQ 94 (185)
T ss_dssp HHHTC----SEEEEEEEC
T ss_pred HHHhC----CCeEEEEee
Confidence 55432 358888886
No 14
>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=38.08 E-value=2.6 Score=29.11 Aligned_cols=26 Identities=8% Similarity=0.367 Sum_probs=20.1
Q ss_pred CcchhhHhhhccccceeeeecceeecC
Q psy3767 114 RYQAIDQRFLDNFIDEEISVGDFILSG 140 (246)
Q Consensus 114 rYEGiDeRv~~~~vdeeiSIGDyVLsG 140 (246)
-|-|+-.+|--.++. |+.+|||||.-
T Consensus 19 d~~G~~r~v~l~lv~-e~~vGDyVLVh 44 (71)
T d2z1ca1 19 DFGGVKREVRLDLMP-DTKPGDWVIVH 44 (71)
T ss_dssp EETTEEEEEECTTST-TCCTTCEEEEE
T ss_pred EcCCeEEEEEEEeeC-CCCCCCEEEEe
Confidence 566888887766775 59999999964
No 15
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}
Probab=35.73 E-value=4.8 Score=28.93 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=17.6
Q ss_pred CcchhhHhhhccccc-----eeeeecceeecC
Q psy3767 114 RYQAIDQRFLDNFID-----EEISVGDFILSG 140 (246)
Q Consensus 114 rYEGiDeRv~~~~vd-----eeiSIGDyVLsG 140 (246)
.|-|+=.+|-=.++. .++++|||||.=
T Consensus 20 d~~Gv~r~v~l~lv~~~~~~~e~~vGDyVLVH 51 (90)
T d2ot2a1 20 DVCGIQRDVDLTLVGSCDENGQPRVGQWVLVH 51 (90)
T ss_dssp ECSSSEEEEECTTTCSBCTTSCBCTTCEEEEE
T ss_pred EeCCcEEEEEEeccccccCCcccCCCCEEEEe
Confidence 455665555333553 489999999963
No 16
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=35.00 E-value=27 Score=23.57 Aligned_cols=98 Identities=11% Similarity=0.143 Sum_probs=53.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEe-CCCCCccCHHHHHHHhcCCCeEEE--ccCcchhhHhhhccccc
Q psy3767 52 YPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYM-SPQGKKLTHNIIIKLLKESNLILL--CGRYQAIDQRFLDNFID 128 (246)
Q Consensus 52 ~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~l-sP~G~~~~Q~~a~~La~~~~lvli--CGrYEGiDeRv~~~~vd 128 (246)
--.+||.|+ -|+..-++.+......+..++|= .-....+-+...++++...++... .++..+.+.- .. ..
T Consensus 12 v~IagGtGi----aP~~s~~~~l~~~~~~~~~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~ 84 (120)
T d2piaa2 12 ILVAGGIGI----TPMLSMARQLRAEGLRSFRLYYLTRDPEGTAFFDELTSDEWRSDVKIHHDHGDPTKAFDF-WS--VF 84 (120)
T ss_dssp EEEEEGGGH----HHHHHHHHHHHHHCSSEEEEEEEESCGGGCTTHHHHHSTTTTTTEEEEECTTCTTSCCCH-HH--HH
T ss_pred EEEEecccH----HHHHHHHHHHHHhcCCCeEEEEeeCCHHHhhhhHHHHHHhhCCCeEEeeecCCCcccccH-HH--Hh
Confidence 457999998 68888887775442211233432 233455666777777776666543 3333332211 11 11
Q ss_pred eeeeecceeecCCchhHHHHHHHHHHhcccc
Q psy3767 129 EEISVGDFILSGGELPAMMLIDAIVRLLPKV 159 (246)
Q Consensus 129 eeiSIGDyVLsGGElaAmvliDav~RliPGv 159 (246)
....=++.|...|- ..||++|.+++-|+
T Consensus 85 ~~~~~~~~~y~CGp---~~mi~~v~~~~~~~ 112 (120)
T d2piaa2 85 EKSKPAQHVYCCGP---QALMDTVRDMTGHW 112 (120)
T ss_dssp SSCCTTEEEEEESC---HHHHHHHHHHTTTS
T ss_pred ccCCCcCEEEEeCC---HHHHHHHHHHHcCC
Confidence 12223455566663 35678999998774
No 17
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}
Probab=32.60 E-value=12 Score=30.17 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=50.9
Q ss_pred CCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhH---hhhccccceeeeec
Q psy3767 58 VGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ---RFLDNFIDEEISVG 134 (246)
Q Consensus 58 ~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDe---Rv~~~~vdeeiSIG 134 (246)
||...+-.=+.+.|++..+ ...+++|...|+.+.+. .-.++.+||-|==.|+.+ ..++.+.++-||+|
T Consensus 107 pGi~~~~~~~e~~l~e~~e----~~~~~~Lde~G~~i~~~-----~~~~~~~FILsDh~~~~~~e~~~L~~~g~~~iSLG 177 (201)
T d2qwva1 107 PGLTVRTISFEALLGELAE----HHSLYMMDKKGDSIRDI-----KIGPNPCFILTDHIPMPKKSGNSMKRLGVEKISLG 177 (201)
T ss_dssp TTEEEECCCHHHHHHHHHT----TSEEEEEEEEEEETTTS-----CCCSSEEEEECC----------CTTTTTCEEEECC
T ss_pred CCEEEeCCCHHHHHHHHhc----CCcEEEECCCCCchhhc-----cCCCCCEEEEeCCCCCCHHHHHHHHhcCCeeEeec
Confidence 7888888888888888743 34799999999999763 234678999998888865 45565677889999
Q ss_pred ceeec
Q psy3767 135 DFILS 139 (246)
Q Consensus 135 DyVLs 139 (246)
--.|-
T Consensus 178 p~~L~ 182 (201)
T d2qwva1 178 PKMLF 182 (201)
T ss_dssp SSCCC
T ss_pred cHHHH
Confidence 76664
No 18
>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=29.62 E-value=50 Score=27.31 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=36.4
Q ss_pred CCcccccHHHHHHHHHHHhhcCCCCcEEEeC----CCCCccCHHHHHHH---hcCCCeEEEc
Q psy3767 58 VGMIMLGKPIEDTITAIKKNIKKIPKIIYMS----PQGKKLTHNIIIKL---LKESNLILLC 112 (246)
Q Consensus 58 ~GMvm~~ePi~~al~~~~~~~~~~~~vI~ls----P~G~~~~Q~~a~~L---a~~~~lvliC 112 (246)
.++-+.++-+..+++..... ..+.++|+++ |.|..++.+..+++ |++.++.+|+
T Consensus 166 ~~~~~d~~~~~~~~~~~~~~-~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~ 226 (428)
T d1iaya_ 166 NNFKITSKAVKEAYENAQKS-NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVC 226 (428)
T ss_dssp TTTCCCHHHHHHHHHHHHHT-TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred cccccccccccchhhhhhcc-CCCceEEEEccCCCcccccccccccchhheeeccCcEEEEe
Confidence 34557778888888877554 2234555554 78999998766665 5567777774
No 19
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=24.95 E-value=16 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=29.4
Q ss_pred ccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccc
Q psy3767 12 MFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIML 63 (246)
Q Consensus 12 ~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~ 63 (246)
+|+..+.+.|-.-|+++.+ --+|.|.||-|-||=++.
T Consensus 51 wfdtmlgfaisayalksri---------------altvedspypgtpgdlle 87 (98)
T d1prtf_ 51 WFDTMLGFAISAYALKSRI---------------ALTVEDSPYPGTPGDLLE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHTCCE---------------EEEECCCSSSSSCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhce---------------EEEecCCCCCCCCcceee
Confidence 5777788888888887765 346999999999997753
No 20
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.76 E-value=43 Score=28.15 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCCCCcEEEeCCCCCccCHHHHHHHhc--CCCeEEEccC
Q psy3767 67 IEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLK--ESNLILLCGR 114 (246)
Q Consensus 67 i~~al~~~~~~~~~~~~vI~lsP~G~~~~Q~~a~~La~--~~~lvliCGr 114 (246)
+.++++.++. .-+|=+|-+|..||+++.+.+++ ++.+||-|..
T Consensus 98 L~e~i~~~kp-----tvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSN 142 (294)
T d1pj3a1 98 FEDAVNILKP-----STIIGVAGAGRLFTPDVIRAMASINERPVIFALSN 142 (294)
T ss_dssp HHHHHHHHCC-----SEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred HHHHHHhcCC-----ceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccC
Confidence 5666666642 35788888999999999998874 5689998876
No 21
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.59 E-value=95 Score=22.50 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=56.4
Q ss_pred HhhhHHHHHHHcCCeEEEEEccCCCCCC---CCcccCCCCCCCCCCccc---ccHHHHHHHHHHHhhcCCCCcEEEeCCC
Q psy3767 17 TQSGITRRAFEKKQYSLNLWNPRNFSSN---NYRKIDDYPYGGGVGMIM---LGKPIEDTITAIKKNIKKIPKIIYMSPQ 90 (246)
Q Consensus 17 ~~~si~~rA~~~g~~~i~~~n~Rdf~~d---kh~~VDD~pyGGG~GMvm---~~ePi~~al~~~~~~~~~~~~vI~lsP~ 90 (246)
..+-++....+.|. ++..+|+|.=+-. -|.++.|-| +.+-+|. .++-+..+++++.+. +.+.+.+.|.
T Consensus 34 ~g~~v~~~L~~~g~-~v~pVnP~~~~i~G~~~~~sl~dlp--~~iD~v~i~vp~~~~~~~~~e~~~~---g~k~v~~~~G 107 (139)
T d2d59a1 34 DANIVMKYLLEHGY-DVYPVNPKYEEVLGRKCYPSVLDIP--DKIEVVDLFVKPKLTMEYVEQAIKK---GAKVVWFQYN 107 (139)
T ss_dssp HHHHHHHHHHHTTC-EEEEECTTCSEETTEECBSSGGGCS--SCCSEEEECSCHHHHHHHHHHHHHH---TCSEEEECTT
T ss_pred chHHHHHHHHHCCC-EEEEECCcccccCCCcccccccccC--ccceEEEEEeCHHHHHHHHHHHHHh---CCCEEEEecc
Confidence 35567777778886 9999999853322 467777766 4466664 455555555555443 4678888787
Q ss_pred CCccCHHHHHHHhcCCCeEEE
Q psy3767 91 GKKLTHNIIIKLLKESNLILL 111 (246)
Q Consensus 91 G~~~~Q~~a~~La~~~~lvli 111 (246)
+. + +.+.++++...+.++
T Consensus 108 ~~--~-ee~~~~a~~~gi~vi 125 (139)
T d2d59a1 108 TY--N-REASKKADEAGLIIV 125 (139)
T ss_dssp CC--C-HHHHHHHHHTTCEEE
T ss_pred cc--C-HHHHHHHHHCCCEEE
Confidence 64 4 556677776677665
No 22
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]}
Probab=20.87 E-value=65 Score=27.96 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=42.2
Q ss_pred cCC-CCCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCc---cCH-----HHHHHHhc--CCCeEEEc
Q psy3767 49 IDD-YPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKK---LTH-----NIIIKLLK--ESNLILLC 112 (246)
Q Consensus 49 VDD-~pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~---~~Q-----~~a~~La~--~~~lvliC 112 (246)
||- .|.- -|-|+...=|.+++..++....++++||++|-+|+| +++ ..|+.|++ ...+.|+-
T Consensus 19 ~D~NvPi~--~g~i~d~~RI~~~~pTI~~l~~~~akvil~SH~GRP~g~~~~~~Sl~~~~~~L~~~l~~~v~f~~ 91 (398)
T d1vpea_ 19 VDFNVPVK--DGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVP 91 (398)
T ss_dssp CCCCCCEE--TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHHHHTSCCEEES
T ss_pred eccCCccc--CCcCCChHHHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCccCHHHHHHHHHhhhcceEEEee
Confidence 453 3674 578887778888877765432336799999999997 343 36777776 35676653
No 23
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=20.86 E-value=1.5e+02 Score=22.13 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=66.0
Q ss_pred HHHHhhhHHHH-HHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCccccc---HHHHHHHHHHHhhcCCCCcEEEeCC
Q psy3767 14 SAITQSGITRR-AFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLG---KPIEDTITAIKKNIKKIPKIIYMSP 89 (246)
Q Consensus 14 ~~~~~~si~~r-A~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~---ePi~~al~~~~~~~~~~~~vI~lsP 89 (246)
..+.+.|-+-| |..-|+-.+.+++++.....-.+ -.+|.+..... ..+.++++.++.. +..++.+++
T Consensus 31 ~~p~NiG~IiRta~afG~~~v~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~i~~~~~ 101 (191)
T d1v2xa_ 31 HKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFNE------TSGGSHKWVYLRVHPDLHEAFRFLKER---GFTVYATAL 101 (191)
T ss_dssp CCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCCS------SCSSGGGTSEEEEESSHHHHHHHHHHT---TCEEEEECC
T ss_pred CCCchHHHHHHHHHhhccccccccCCccccceeee------cchhhheeecccccchhhhHHHHHhhc---CCccccccc
Confidence 34567776666 55668889999999876644222 33444444443 3467788877654 356777776
Q ss_pred CCC--ccCHHHHHHHhcCCCeEEEccC-cchhhHhhhccccceeeee
Q psy3767 90 QGK--KLTHNIIIKLLKESNLILLCGR-YQAIDQRFLDNFIDEEISV 133 (246)
Q Consensus 90 ~G~--~~~Q~~a~~La~~~~lvliCGr-YEGiDeRv~~~~vdeeiSI 133 (246)
.+. .+. +..-.++++||-|+ =+|+.+.+++ ..|.-|+|
T Consensus 102 ~~~~~~~~-----~~~~~~~~~lV~G~E~~Gls~~~l~-~~d~~v~I 142 (191)
T d1v2xa_ 102 REDARDFR-----EVDYTKPTAVLFGAEKWGVSEEALA-LADGAIKI 142 (191)
T ss_dssp CTTSEEGG-----GSCTTSSEEEEECBTTTBSCHHHHH-HSSEEEEC
T ss_pred cccccccc-----cccCCCCeEEEEccccccccHHHHH-hCCcEEEe
Confidence 654 332 23334566676665 5789888887 56776666
No 24
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.84 E-value=97 Score=26.73 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=41.6
Q ss_pred cCCC-CCCCCCCcccccHHHHHHHHHHHhhcCCCCcEEEeCCCCCc---cC-----HHHHHHHhc--CCCeEEE
Q psy3767 49 IDDY-PYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKK---LT-----HNIIIKLLK--ESNLILL 111 (246)
Q Consensus 49 VDD~-pyGGG~GMvm~~ePi~~al~~~~~~~~~~~~vI~lsP~G~~---~~-----Q~~a~~La~--~~~lvli 111 (246)
||-- |.- .|-+....=|.+++..++....++++||++|-+|+| ++ +..|++|++ ...+.|+
T Consensus 20 ~D~NvPi~--~g~I~d~~RI~~~~pTI~~ll~~~akvvl~SH~GRPkgk~~~~~Sl~~~~~~L~~~l~~~v~f~ 91 (394)
T d1phpa_ 20 VDFNVPME--QGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKT 91 (394)
T ss_dssp CCCCCCEE--TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHHHHTSCCEEC
T ss_pred eecCCCcc--CCeECChHHHHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCCcccchHHHHHHHHHhcccccccc
Confidence 4433 664 467888888888887765432236799999999997 33 567888876 3456664
Done!