RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3767
(246 letters)
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD
{Haemophilus influenzae [TaxId: 727]}
Length = 252
Score = 261 bits (668), Expect = 6e-89
Identities = 110/247 (44%), Positives = 163/247 (65%), Gaps = 5/247 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
M VI+LFPEMF AIT+ G+T RA + + WNPR+F+ + ++ +DD PYGGG GM
Sbjct: 3 MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGM 62
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
+M+ +P+ D I K + K+IY+SPQG+KL + +L + LIL+CGRY+ ID+
Sbjct: 63 LMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDE 122
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQ-DSFINGLLDCSY 179
R + IDEE S+GD++L+GGELPAM LIDA+ R +P VL + + + DSF +GLLDC +
Sbjct: 123 RLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPH 182
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF 239
YT+P + + VP VL+SG+H++I+KW+ K SL+ T +RP+L+ LT +
Sbjct: 183 YTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLA----LTDEQRKL 238
Query: 240 LKKINKK 246
LK+ +
Sbjct: 239 LKEAQAE 245
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex
aeolicus [TaxId: 63363]}
Length = 232
Score = 232 bits (593), Expect = 8e-78
Identities = 87/231 (37%), Positives = 140/231 (60%), Gaps = 5/231 (2%)
Query: 1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
++F V+T+FP + S ++ GI ++A +K + + + R F+ ++DD PYGG GM
Sbjct: 3 LRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPK--GQVDDVPYGGLPGM 60
Query: 61 IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
++ +PI + + +N P ++ P G+KL ++ +L K+ ++++CGRY+ +D+
Sbjct: 61 VLKPEPIYEAYDYVVENYG-KPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDE 119
Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFI-NGLLDCSY 179
R D EIS+GDFILSGGE+ A+ +IDA+ R+LP VL+ ++Q+ N L
Sbjct: 120 RVKKIV-DMEISLGDFILSGGEIVALAVIDAVSRVLPGVLSEPQSIQEDSFQNRWLGYPV 178
Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNK 230
YT+PR Y M+VP LLSG+HK I+ WK + ++ T KKRPDLI K
Sbjct: 179 YTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPKDLTEL 229
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 227
Score = 79.5 bits (196), Expect = 1e-18
Identities = 15/106 (14%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 38 PRNFSSNNYRK-IDDYPYGGGVGMIMLGKPIEDTIT-AIKKNIKKIPKIIYMSPQGKKLT 95
PR F + + + + + + + I I ++ + + +S +
Sbjct: 107 PRTF--KRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIR 164
Query: 96 HNIIIKLL-KESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSG 140
I+ L + ++ + G F D ++DE++ + ++ LS
Sbjct: 165 VQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSA 210
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 145
Score = 27.0 bits (59), Expect = 1.6
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 9/113 (7%)
Query: 102 LLKESNLILLCGRYQAIDQRFLDNFIDEEI-SVGDFILSGGELPAMMLIDAIVRLLPKVL 160
LL +N Y RF +++D ++ G + P + +L + L
Sbjct: 1 LLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEIL-RTL 59
Query: 161 NNKLNMQDSFIN------GLLDCSYYTK-PRIYLNMEVPIVLLSGNHKKIKKW 206
+L ++ F G +D + Y + ++ W
Sbjct: 60 EAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAW 112
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal
domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Length = 94
Score = 25.6 bits (56), Expect = 2.6
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 148 LIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKP 183
++ + ++ +LN + ++ NGL DC+ +T+P
Sbjct: 49 VLSRLAEIISNILNEQESLIHRLQNGLQDCATHTQP 84
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 107
Score = 25.4 bits (55), Expect = 3.2
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 79 KKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEIS 132
+K+P ++ +SP G + L+ S + ++ + I
Sbjct: 2 EKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHC 55
>d1y60a_ d.14.1.12 (A:) Formaldehyde-activating enzyme, FAE
{Methylobacterium extorquens [TaxId: 408]}
Length = 168
Score = 25.8 bits (57), Expect = 3.3
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 40 NFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTH 96
++ + + KI Y Y T +I++ + PK ++ Q K TH
Sbjct: 120 HWEAADDAKIQKYNYEA-------------TKLSIQRAVNGEPKASVVTEQRKSATH 163
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
halodurans [TaxId: 86665]}
Length = 132
Score = 24.9 bits (54), Expect = 6.3
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 203 IKKWKRKNSLKIT--NKKRPDLIIKARK 228
+K K K++L L+ +A +
Sbjct: 79 VKDKKAKSTLVRNEETALIWKLVDEAEE 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.407
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 983,265
Number of extensions: 50046
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 18
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)