BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3769
(974 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 286 bits (731), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 201/325 (61%), Gaps = 5/325 (1%)
Query: 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGI 60
MN++EYQ K++ ++ + P G C EA +AA KIG WV+K Q+HAGGRGK GG+
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60
Query: 61 KLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQN 120
K+ S E + + + LG +L+T QT+ G+ V +L+E DI KELY+ + DR +
Sbjct: 61 KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRR 120
Query: 121 IIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXXXXXXXFYEE 180
++FM S +GG++IE +++ +P L++K +DPL G F +
Sbjct: 121 VVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKI 180
Query: 181 IQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQYAHKKYI 240
+ + E D L+EINPLVI + +I LD K D NALFR P++ + ++
Sbjct: 181 FMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQE-- 238
Query: 241 NKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATI 300
D E +A++++L Y+ L+GNIGC+VNGAGLAM TMD +KL GGEPANFLD+GGGAT
Sbjct: 239 ---DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATK 295
Query: 301 KTITEAFKIMMQQNNLKTILVNIFG 325
+ +TEAFKI++ + +K +LVNIFG
Sbjct: 296 ERVTEAFKIILSDDKVKAVLVNIFG 320
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 286 bits (731), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 201/325 (61%), Gaps = 5/325 (1%)
Query: 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGI 60
MN++EYQ K++ ++ + P G C EA +AA KIG WV+K Q+HAGGRGK GG+
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60
Query: 61 KLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQN 120
K+ S E + + + LG +L+T QT+ G+ V +L+E DI KELY+ + DR +
Sbjct: 61 KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRR 120
Query: 121 IIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXXXXXXXFYEE 180
++FM S +GG++IE +++ +P L++K +DPL G F +
Sbjct: 121 VVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKI 180
Query: 181 IQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQYAHKKYI 240
+ + E D L+EINPLVI + +I LD K D NALFR P++ + ++
Sbjct: 181 FMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQE-- 238
Query: 241 NKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATI 300
D E +A++++L Y+ L+GNIGC+VNGAGLAM TMD +KL GGEPANFLD+GGGAT
Sbjct: 239 ---DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATK 295
Query: 301 KTITEAFKIMMQQNNLKTILVNIFG 325
+ +TEAFKI++ + +K +LVNIFG
Sbjct: 296 ERVTEAFKIILSDDKVKAVLVNIFG 320
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 283 bits (725), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 200/325 (61%), Gaps = 5/325 (1%)
Query: 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGI 60
MN++EYQ K++ ++ + P G C EA +AA KIG WV+K Q+HAGGRGK GG+
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60
Query: 61 KLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQN 120
K+ S E + + + LG +L+T QT+ G+ V +L+E DI KELY+ + DR +
Sbjct: 61 KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRR 120
Query: 121 IIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXXXXXXXFYEE 180
++FM S +GG++IE +++ +P L++K +DPL G F +
Sbjct: 121 VVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKI 180
Query: 181 IQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQYAHKKYI 240
+ + E D L+ INPLVI + +I LD K D NALFR P++ + ++
Sbjct: 181 FMGLATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQE-- 238
Query: 241 NKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATI 300
D E +A++++L Y+ L+GNIGC+VNGAGLAM TMD +KL GGEPANFLD+GGGAT
Sbjct: 239 ---DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATK 295
Query: 301 KTITEAFKIMMQQNNLKTILVNIFG 325
+ +TEAFKI++ + +K +LVNIFG
Sbjct: 296 ERVTEAFKIILSDDKVKAVLVNIFG 320
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 286
Score = 262 bits (670), Expect = 6e-70, Method: Composition-based stats.
Identities = 132/243 (54%), Positives = 166/243 (68%), Gaps = 5/243 (2%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TG G FH+ + YG V GV P K G +P+F+TV+ A TGAT SVI
Sbjct: 14 GFTGSQGTFHSEQAIAYGT---KMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVI 70
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVPA F +I EAI++ ++L+I ITEGIP DM GPNCPG+I
Sbjct: 71 YVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI--GPNCPGVIT 128
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGI PG+IHK G++G+VSRSGTLTYE V Q T+ GFGQS+ VGIGGDPI G +I
Sbjct: 129 PGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFI 188
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPGKRMGHAG 564
DIL++F +D T+A++MIGEIGG E AA +IK+++ KPV+G+IAG+TAP GKRMGHAG
Sbjct: 189 DILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAG 248
Query: 565 ALI 567
A+I
Sbjct: 249 AII 251
>pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 262 bits (669), Expect = 7e-70, Method: Composition-based stats.
Identities = 132/243 (54%), Positives = 166/243 (68%), Gaps = 5/243 (2%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TG G FH+ + YG V GV P K G +P+F+TV+ A TGAT SVI
Sbjct: 14 GFTGSQGTFHSEQAIAYGT---KMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVI 70
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVPA F +I EAI++ ++L+I ITEGIP DM GPNCPG+I
Sbjct: 71 YVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI--GPNCPGVIT 128
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGI PG+IHK G++G+VSRSGTLTYE V Q T+ GFGQS+ VGIGGDPI G +I
Sbjct: 129 PGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFI 188
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPGKRMGHAG 564
DIL++F +D T+A++MIGEIGG E AA +IK+++ KPV+G+IAG+TAP GKRMGHAG
Sbjct: 189 DILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAG 248
Query: 565 ALI 567
A+I
Sbjct: 249 AII 251
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|D Chain D, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 258 bits (658), Expect = 1e-68, Method: Composition-based stats.
Identities = 131/243 (53%), Positives = 165/243 (67%), Gaps = 5/243 (2%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TG G FH+ + YG V GV P K G +P+F+TV+ A TGAT SVI
Sbjct: 14 GFTGSQGTFHSEQAIAYGT---KMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVI 70
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVPA F +I EAI++ ++L+I ITEGIP DM GPN PG+I
Sbjct: 71 YVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI--GPNSPGVIT 128
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGI PG+IHK G++G+VSRSGTLTYE V Q T+ GFGQS+ VGIGGDPI G +I
Sbjct: 129 PGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFI 188
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPGKRMGHAG 564
DIL++F +D T+A++MIGEIGG E AA +IK+++ KPV+G+IAG+TAP GKRMGHAG
Sbjct: 189 DILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAG 248
Query: 565 ALI 567
A+I
Sbjct: 249 AII 251
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 258 bits (658), Expect = 2e-68, Method: Composition-based stats.
Identities = 131/243 (53%), Positives = 165/243 (67%), Gaps = 5/243 (2%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TG G FH+ + YG V GV P K G +P+F+TV+ A TGAT SVI
Sbjct: 14 GFTGSQGTFHSEQAIAYGT---KMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVI 70
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVPA F +I EAI++ ++L+I ITEGIP DM GPN PG+I
Sbjct: 71 YVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI--GPNTPGVIT 128
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGI PG+IHK G++G+VSRSGTLTYE V Q T+ GFGQS+ VGIGGDPI G +I
Sbjct: 129 PGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFI 188
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPGKRMGHAG 564
DIL++F +D T+A++MIGEIGG E AA +IK+++ KPV+G+IAG+TAP GKRMGHAG
Sbjct: 189 DILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAG 248
Query: 565 ALI 567
A+I
Sbjct: 249 AII 251
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|D Chain D, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 257 bits (657), Expect = 2e-68, Method: Composition-based stats.
Identities = 131/243 (53%), Positives = 165/243 (67%), Gaps = 5/243 (2%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TG G FH+ + YG V GV P K G +P+F+TV+ A TGAT SVI
Sbjct: 14 GFTGSQGTFHSEQAIAYGT---KMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVI 70
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVPA F +I EAI++ ++L+I ITEGIP DM GPN PG+I
Sbjct: 71 YVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI--GPNVPGVIT 128
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGI PG+IHK G++G+VSRSGTLTYE V Q T+ GFGQS+ VGIGGDPI G +I
Sbjct: 129 PGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFI 188
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPGKRMGHAG 564
DIL++F +D T+A++MIGEIGG E AA +IK+++ KPV+G+IAG+TAP GKRMGHAG
Sbjct: 189 DILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAG 248
Query: 565 ALI 567
A+I
Sbjct: 249 AII 251
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1SCU|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|D Chain D, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
Length = 288
Score = 249 bits (636), Expect = 6e-66, Method: Composition-based stats.
Identities = 126/236 (53%), Positives = 159/236 (67%), Gaps = 5/236 (2%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TG G FH+ + YG V GV P K G +P+F+TV+ A TGAT SVI
Sbjct: 14 GFTGSQGTFHSEQAIAYGT---KMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVI 70
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVPA F +I EAI++ ++L+I ITEGIP DM GPNCPG+I
Sbjct: 71 YVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI--GPNCPGVIT 128
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGI PG+IHK G++G+VSRSGTLTYE V Q T+ GFGQS+ VGIGGDPI G +I
Sbjct: 129 PGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFI 188
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPGKRM 560
DIL++F +D T+A++MIGEIGG E AA +IK+++ KPV+G+IAG+TAP GKRM
Sbjct: 189 DILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRM 244
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|D Chain D, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 244 bits (624), Expect = 1e-64, Method: Composition-based stats.
Identities = 125/236 (52%), Positives = 158/236 (66%), Gaps = 5/236 (2%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TG G FH+ + YG V GV P K G +P+F+TV+ A TGAT SVI
Sbjct: 14 GFTGSQGTFHSEQAIAYGT---KMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVI 70
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVPA F +I EAI++ ++L+I ITEGIP DM GPN PG+I
Sbjct: 71 YVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI--GPNAPGVIT 128
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGI PG+IHK G++G+VSRSGTLTYE V Q T+ GFGQS+ VGIGGDPI G +I
Sbjct: 129 PGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFI 188
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPGKRM 560
DIL++F +D T+A++MIGEIGG E AA +IK+++ KPV+G+IAG+TAP GKRM
Sbjct: 189 DILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRM 244
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|F Chain F, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|H Chain H, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
Length = 288
Score = 244 bits (624), Expect = 1e-64, Method: Composition-based stats.
Identities = 125/236 (52%), Positives = 158/236 (66%), Gaps = 5/236 (2%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TG G FH+ + YG V GV P K G +P+F+TV+ A TGAT SVI
Sbjct: 14 GFTGSQGTFHSEQAIAYGT---KMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVI 70
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVPA F +I EAI++ ++L+I ITEGIP DM GPN PG+I
Sbjct: 71 YVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI--GPNTPGVIT 128
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGI PG+IHK G++G+VSRSGTLTYE V Q T+ GFGQS+ VGIGGDPI G +I
Sbjct: 129 PGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFI 188
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPGKRM 560
DIL++F +D T+A++MIGEIGG E AA +IK+++ KPV+G+IAG+TAP GKRM
Sbjct: 189 DILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRM 244
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Aeropyrum Pernix K1
Length = 297
Score = 240 bits (613), Expect = 3e-63, Method: Composition-based stats.
Identities = 125/245 (51%), Positives = 157/245 (64%), Gaps = 7/245 (2%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNE-TGATVSV 383
GITG+ G FH L YG VAGV P K G + +P++D+VK A E S+
Sbjct: 20 GITGREGSFHAKAMLEYGT---KVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSI 76
Query: 384 IYVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLI 443
++VPA FA A++EA+++ + LV+ ITEGIPV D GPNCPG I
Sbjct: 77 VFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHD--TMRFVNYARQKGATIIGPNCPGAI 134
Query: 444 VPEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKY 503
P + K+GIMPG+I K+G + VVSRSGTLTYE+ LT G GQS+ +GIGGDPI GL +
Sbjct: 135 TPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSF 194
Query: 504 IDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK-NMKKPVIGFIAGITAPPGKRMGH 562
+ LKLF ED T+A+++IGEIGG E AA IKK KPVI +IAG TAPP KRMGH
Sbjct: 195 TEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRTAPPEKRMGH 254
Query: 563 AGALI 567
AGA+I
Sbjct: 255 AGAII 259
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 186/325 (57%), Gaps = 14/325 (4%)
Query: 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGI 60
MN++EYQ KEIL ++ V +P G + +EA + A++ G VIKAQ+H GGRGK GG+
Sbjct: 1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFG-KRVVIKAQVHVGGRGKAGGV 59
Query: 61 KLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQN 120
KLA + ++ + + ILGM N +G V VL+ E +DI KE Y + DR ++
Sbjct: 60 KLADTPQEAYEKAQAILGM-------NIKGLTVKKVLVAEAVDIAKEYYAGLILDRAKKR 112
Query: 121 IIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXXXXXXXFYEE 180
++ M S +GG+DIE ++ PE ++K IDP G +
Sbjct: 113 VVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLEGNLNK-LAQV 171
Query: 181 IQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQYAHKKYI 240
+ +Y++Y D+ + EINPLV+ + I++ D K D NALFRHP++ A + +
Sbjct: 172 LVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDL-----AELREV 226
Query: 241 NKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATI 300
+E+EAS + Y+ L+GNIG + NGAGL M T+D + GG+PANFLDIGGGA
Sbjct: 227 EAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAKA 286
Query: 301 KTITEAFKIMMQQNNLKTILVNIFG 325
+ A K++++ ++K + +NIFG
Sbjct: 287 DVVYNALKVVLKDPDVKGVFINIFG 311
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 311
Score = 229 bits (584), Expect = 5e-60, Method: Composition-based stats.
Identities = 133/242 (54%), Positives = 163/242 (67%), Gaps = 8/242 (3%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TGK G FH+ L YG V G P K G+ +P+F+TVK AK +TGAT SVI
Sbjct: 27 GFTGKQGTFHSQQALEYGTN---LVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVI 83
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVP FA +AI EAI++E+ LV+CITEGIP +DM GPNCPG+I
Sbjct: 84 YVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI-GPNCPGVIN 142
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGIMPG+IHKKGRIG+VSRSGTLTYE V Q T++G GQS VGIGGDP NG +
Sbjct: 143 PGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFT 202
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKN----MKKPVIGFIAGITAPPGKRM 560
D L++F D T+ +I+IGEIGG E AA ++K++ KPV+ FIAG+TAPPG+RM
Sbjct: 203 DCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRM 262
Query: 561 GH 562
GH
Sbjct: 263 GH 264
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
Length = 305
Score = 229 bits (583), Expect = 6e-60, Method: Composition-based stats.
Identities = 133/242 (54%), Positives = 163/242 (67%), Gaps = 8/242 (3%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TGK G FH+ L YG V G P K G+ +P+F+TVK AK +TGAT SVI
Sbjct: 21 GFTGKQGTFHSQQALEYGTN---LVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVI 77
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVP FA +AI EAI++E+ LV+CITEGIP +DM GPNCPG+I
Sbjct: 78 YVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI-GPNCPGVIN 136
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGIMPG+IHKKGRIG+VSRSGTLTYE V Q T++G GQS VGIGGDP NG +
Sbjct: 137 PGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFT 196
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKN----MKKPVIGFIAGITAPPGKRM 560
D L++F D T+ +I+IGEIGG E AA ++K++ KPV+ FIAG+TAPPG+RM
Sbjct: 197 DCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRM 256
Query: 561 GH 562
GH
Sbjct: 257 GH 258
>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 311
Score = 224 bits (570), Expect = 3e-58, Method: Composition-based stats.
Identities = 131/240 (54%), Positives = 161/240 (67%), Gaps = 8/240 (3%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TGK G FH+ L YG V G P K G+ +P+F+TVK AK +TGAT SVI
Sbjct: 27 GFTGKQGTFHSQQALEYGTN---LVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVI 83
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVP FA +AI EAI++E+ LV+CITEGIP +DM GPNCPG+I
Sbjct: 84 YVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI-GPNCPGVIN 142
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGIMPG+IHKKGRIG+VSRSGTLTYE V Q T++G GQS VGIGGDP NG +
Sbjct: 143 PGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFT 202
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKN----MKKPVIGFIAGITAPPGKRM 560
D L++F D T+ +I+IGEIGG E AA ++K++ KPV+ FIAG+TAPPG+RM
Sbjct: 203 DCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRM 262
>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPI|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 305
Score = 223 bits (569), Expect = 3e-58, Method: Composition-based stats.
Identities = 131/240 (54%), Positives = 161/240 (67%), Gaps = 8/240 (3%)
Query: 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVI 384
G TGK G FH+ L YG V G P K G+ +P+F+TVK AK +TGAT SVI
Sbjct: 21 GFTGKQGTFHSQQALEYGTN---LVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVI 77
Query: 385 YVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIV 444
YVP FA +AI EAI++E+ LV+CITEGIP +DM GPNCPG+I
Sbjct: 78 YVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI-GPNCPGVIN 136
Query: 445 PEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYI 504
P E KIGIMPG+IHKKGRIG+VSRSGTLTYE V Q T++G GQS VGIGGDP NG +
Sbjct: 137 PGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFT 196
Query: 505 DILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKN----MKKPVIGFIAGITAPPGKRM 560
D L++F D T+ +I+IGEIGG E AA ++K++ KPV+ FIAG+TAPPG+RM
Sbjct: 197 DCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRM 256
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 223 bits (568), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 190/332 (57%), Gaps = 12/332 (3%)
Query: 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKC--- 57
MN+ EYQ K+++ V + + + +EA++AAK++ V+KAQI AGGRGK
Sbjct: 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 60
Query: 58 ----GGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFM 113
GG+ L + E V + K+++G L T QT +EG V V++ E +DI +E Y++ +
Sbjct: 61 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 120
Query: 114 TDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXXXX 173
DR + +GS +GG+DIE ++ ++PEL++K ID + G+
Sbjct: 121 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 180
Query: 174 XXXFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQ 233
++I+ +Y + + D+ +E+NP + +++ D K NFD NA FR +I +
Sbjct: 181 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 240
Query: 234 YAHKKYINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLD 293
+ + +E EA+K+DL YI L+GNI C VNGAGLAMAT D I L GG+PANFLD
Sbjct: 241 DKSEN-----EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLD 295
Query: 294 IGGGATIKTITEAFKIMMQQNNLKTILVNIFG 325
+GGG + +AFK++ ++ ILVNIFG
Sbjct: 296 LGGGVKESQVYQAFKLLTADPKVEAILVNIFG 327
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 190/332 (57%), Gaps = 12/332 (3%)
Query: 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKC--- 57
+N+ EYQ K+++ V + + + +EA++AAK++ V+KAQI AGGRGK
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 61
Query: 58 ----GGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFM 113
GG+ L + E V + K+++G L T QT +EG V V++ E +DI +E Y++ +
Sbjct: 62 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 121
Query: 114 TDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXXXX 173
DR + +GS +GG+DIE ++ ++PEL++K ID + G+
Sbjct: 122 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 181
Query: 174 XXXFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQ 233
++I+ +Y + + D+ +E+NP + +++ D K NFD NA FR +I +
Sbjct: 182 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 241
Query: 234 YAHKKYINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLD 293
+ + +E EA+K+DL YI L+GNI C VNGAGLAMAT D I L GG+PANFLD
Sbjct: 242 DKSEN-----EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLD 296
Query: 294 IGGGATIKTITEAFKIMMQQNNLKTILVNIFG 325
+GGG + +AFK++ ++ ILVNIFG
Sbjct: 297 LGGGVKESQVYQAFKLLTADPKVEAILVNIFG 328
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 190/332 (57%), Gaps = 12/332 (3%)
Query: 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKC--- 57
+N+ EYQ K+++ V + + + +EA++AAK++ V+KAQI AGGRGK
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 61
Query: 58 ----GGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFM 113
GG+ L + E V + K+++G L T QT +EG V V++ E +DI +E Y++ +
Sbjct: 62 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 121
Query: 114 TDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXXXX 173
DR + +GS +GG+DIE ++ ++PEL++K ID + G+
Sbjct: 122 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 181
Query: 174 XXXFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQ 233
++I+ +Y + + D+ +E+NP + +++ D K NFD NA FR +I +
Sbjct: 182 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 241
Query: 234 YAHKKYINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLD 293
+ + +E EA+K+DL YI L+GNI C VNGAGLAMAT D I L GG+PANFLD
Sbjct: 242 DKSEN-----EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLD 296
Query: 294 IGGGATIKTITEAFKIMMQQNNLKTILVNIFG 325
+GGG + +AFK++ ++ ILVNIFG
Sbjct: 297 LGGGVKESQVYQAFKLLTADPKVEAILVNIFG 328
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Methanocaldococcus Jannaschii Dsm 2661
Length = 294
Score = 220 bits (561), Expect = 3e-57, Method: Composition-based stats.
Identities = 131/264 (49%), Positives = 172/264 (65%), Gaps = 9/264 (3%)
Query: 308 KIMMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIF 367
K+++ N K I + GITG+ G FHT L G V GV P K GQ +P+F
Sbjct: 6 KMILLDENTKAI---VQGITGRQGSFHTKKMLECGT---KIVGGVTPGKGGQNVHGVPVF 59
Query: 368 DTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXX 427
DTVK A ET A SVI+VPA FA A++EAI++ +EL++ ITE IPV D
Sbjct: 60 DTVKEAVKETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHD--TMEFVNYA 117
Query: 428 XXXXXXXXGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQ 487
GPN PG+ P+ K+GI+P + K+G +G+VSRSGTLTYE+ Q+ + GFG
Sbjct: 118 EDVGVKIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGV 177
Query: 488 SSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIG 547
S+ VGIGGDPI GL+Y ++L LF +D T+A++MIGEIGG E AA +I+K MKKPVIG
Sbjct: 178 STCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK-MKKPVIG 236
Query: 548 FIAGITAPPGKRMGHAGALITEIK 571
+IAG +AP GKRMGHAGA++ + K
Sbjct: 237 YIAGQSAPEGKRMGHAGAIVEKGK 260
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|D Chain D, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|F Chain F, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|H Chain H, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 296
Score = 217 bits (553), Expect = 2e-56, Method: Composition-based stats.
Identities = 128/258 (49%), Positives = 165/258 (63%), Gaps = 7/258 (2%)
Query: 310 MMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDT 369
M+ N +LV GITG+ G+FHT L+YG VAGV P K G + +P++DT
Sbjct: 1 MILVNKETRVLVQ--GITGREGQFHTKQMLSYGT---KIVAGVTPGKGGMEVLGVPVYDT 55
Query: 370 VKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXX 429
VK A S+I+VPA A A EA + + L++ ITEGIP DM
Sbjct: 56 VKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG 115
Query: 430 XXXXXXGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSS 489
G NCPG+I EE KIGIMPG++ K+GR+G++SRSGTLTYE L++ G G ++
Sbjct: 116 SRLI--GGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTT 173
Query: 490 AVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFI 549
VGIGGDP+ G + D+L LFNED T+AV++IGEIGG DE AA W+K +MKKPV+GFI
Sbjct: 174 TVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFI 233
Query: 550 AGITAPPGKRMGHAGALI 567
G +AP GKRMGHAGA+I
Sbjct: 234 GGRSAPKGKRMGHAGAII 251
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha
Subunit From Thermus Thermophilus
Length = 288
Score = 217 bits (553), Expect = 2e-56, Method: Composition-based stats.
Identities = 128/258 (49%), Positives = 164/258 (63%), Gaps = 7/258 (2%)
Query: 310 MMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDT 369
M+ N +LV GITG+ G+FHT L YG VAGV P K G + +P++DT
Sbjct: 1 MILVNRETRVLVQ--GITGREGQFHTKQMLTYGT---KIVAGVTPGKGGMEVLGVPVYDT 55
Query: 370 VKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMXXXXXXXXXXX 429
VK A S+I+VPA A A EA + + L++ ITEGIP DM
Sbjct: 56 VKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG 115
Query: 430 XXXXXXGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSS 489
G NCPG+I EE KIGIMPG++ K+GR+G++SRSGTLTYE L++ G G ++
Sbjct: 116 SRLI--GGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTT 173
Query: 490 AVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFI 549
VGIGGDP+ G + D+L LFNED T+AV++IGEIGG DE AA W+K +MKKPV+GFI
Sbjct: 174 TVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFI 233
Query: 550 AGITAPPGKRMGHAGALI 567
G +AP GKRMGHAGA+I
Sbjct: 234 GGRSAPKGKRMGHAGAII 251
>pdb|3FIH|P Chain P, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|2WWL|P Chain P, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 30s, The P-Site
Trna And The Tnac Leader Peptide (Part 1 Of 2).
pdb|3OFP|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3OFB|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The Second 70s Ribosome.
pdb|3OFY|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
pdb|3OAR|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
Length = 80
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 39/53 (73%)
Query: 792 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
DSRN+R+GRFIER+GF+NP+AS+KE+ ++ L+R +W GA S V LI
Sbjct: 23 DSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALI 75
>pdb|2GY9|P Chain P, Structure Of The 30s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYB|P Chain P, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 78
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 39/53 (73%)
Query: 792 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
DSRN+R+GRFIER+GF+NP+AS+KE+ ++ L+R +W GA S V LI
Sbjct: 23 DSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALI 75
>pdb|1P6G|P Chain P, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P87|P Chain P, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AVY|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AW7|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|1VS5|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS7|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2P|P Chain P, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2U|P Chain P, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOU|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|2QOW|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2QOY|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QP0|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QAL|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAN|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QB9|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBB|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBD|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBF|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBH|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBJ|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4K|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4M|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2VHO|P Chain P, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
pdb|2VHP|P Chain P, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
pdb|3DF1|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3DF3|P Chain P, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3IY8|P Chain P, Leishmania Tarentolae Mitonchondrial Ribosome Small
Subunit
pdb|3E1A|I Chain I, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|I Chain I, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
pdb|3I1M|P Chain P, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1O|P Chain P, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Q|P Chain P, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1S|P Chain P, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Z|P Chain P, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I21|P Chain P, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KC4|P Chain P, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
pdb|3OR9|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
pdb|3ORA|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3OFO|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFA|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The First 70s Ribosome.
pdb|3OFX|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OAQ|P Chain P, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3IZV|T Chain T, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|T Chain T, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
pdb|3J00|P Chain P, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|2YKR|P Chain P, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
pdb|4A2I|P Chain P, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
pdb|3SFS|P Chain P, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOQ|P Chain P, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4ADV|P Chain P, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
pdb|3J0U|S Chain S, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0V|S Chain S, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0X|S Chain S, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J0Z|S Chain S, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J10|S Chain S, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J13|R Chain R, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J18|P Chain P, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
pdb|4GAQ|P Chain P, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAS|P Chain P, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GD1|P Chain P, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|4GD2|P Chain P, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 82
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 39/53 (73%)
Query: 792 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
DSRN+R+GRFIER+GF+NP+AS+KE+ ++ L+R +W GA S V LI
Sbjct: 23 DSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALI 75
>pdb|3H9N|A Chain A, Crystal Structure Of The Ribosome Maturation Factor Rimm
(Hi0203) From H.Influenzae. Northeast Structural
Genomics Consortium Target Ir66
Length = 177
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 842 HLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 900
H+ +G + YGI GW+ I + ++IF Y + WF + SI++ N + H +
Sbjct: 1 HIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDY--QPWFLKIKG-EWQSIELENWRYHNH 57
Query: 901 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 960
++ L G+ DR A L + + ++ FP+L D +YW +LI C V N+ G GTV
Sbjct: 58 EIIVKLKGVDDREAAQILANVEIGVDLSVFPELEEGD-YYWHDLIGCTVVNLEGYTXGTV 116
Query: 961 TE 962
TE
Sbjct: 117 TE 118
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 16/226 (7%)
Query: 358 GQKFEEIPIFDTVKNA-KNETGATVSVIYVPAIFATSAIWEAIE-SELELVICITEGIPV 415
G K IP+F + +A + V + + A + E + +++ + I EGIP
Sbjct: 544 GHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIP- 602
Query: 416 RDMXXXXXXXXXXXXXXXXXGPNCPGLIVPEEIKIG--------IMPGNIHKKGRIGVVS 467
+ GP G I P KIG I+ +++ G + VS
Sbjct: 603 -EALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVS 661
Query: 468 RSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGG 527
RSG ++ E+ ++ G V IGGD G ++D + + + ++++GEIGG
Sbjct: 662 RSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGG 721
Query: 528 LDEIYAANWIKK-NMKKPVIGFIAGITA---PPGKRMGHAGALITE 569
+E IK+ + KP++ + G A + GHAGA +
Sbjct: 722 TEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQ 767
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 123/320 (38%), Gaps = 36/320 (11%)
Query: 3 IYEYQGKEILRKFNVT---IPKGILCMNVDEAIKAAKKIGGNSW------VIKAQIHAGG 53
I E GKE+L KF T I V A+ + + W V+K
Sbjct: 6 ISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKR 65
Query: 54 RGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKK--ELYIS 111
RGK G + + +L+ V+ + K LG + + +N LIE ++ + E Y+
Sbjct: 66 RGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNF---LIEPFVPHSQAEEFYVC 122
Query: 112 FMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXX 171
R ++F ++GG+D+ + + +LL +D +
Sbjct: 123 IYATREGDYVLF--HHEGGVDVGDVDAKAQKLLVG--VDEKLNPEDIKKHLLVHAPEDKK 178
Query: 172 XXXXXFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALF------- 224
F + N Y+ + T LEINPLV+ +K+ + LD+ D A +
Sbjct: 179 EILASFISGLFNFYEDLYFT---YLEINPLVV-TKDGVYVLDLAAKVDATADYICKVKWG 234
Query: 225 ---RHPEIISYQYAHKKYINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTI 281
P Y + YI +D + LT + G I +V G G ++ DTI
Sbjct: 235 DIEFPPPFGREAYPEEAYIADLDAKS--GASLKLTLLNPKGRIWTMVAGGGASVVYSDTI 292
Query: 282 KLFGG--EPANFLDIGGGAT 299
GG E AN+ + G +
Sbjct: 293 CDLGGVNELANYGEYSGAPS 312
>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 335
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 16/226 (7%)
Query: 358 GQKFEEIPIFDTVKNA-KNETGATVSVIYVPAIFATSAIWEAIE-SELELVICITEGIPV 415
G K IP+F + +A + V + + A + E + +++ + I EGIP
Sbjct: 58 GHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIP- 116
Query: 416 RDMXXXXXXXXXXXXXXXXXGPNCPGLIVPEEIKIG--------IMPGNIHKKGRIGVVS 467
+ GP G I P KIG I+ +++ G + VS
Sbjct: 117 -EALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVS 175
Query: 468 RSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGG 527
RSG ++ E+ ++ G V IGGD G ++D + + + ++++GEIGG
Sbjct: 176 RSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGG 235
Query: 528 LDEIYAANWIKK-NMKKPVIGFIAGITA---PPGKRMGHAGALITE 569
+E IK+ + KP++ + G A + GHAGA +
Sbjct: 236 TEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQ 281
>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 334
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 14/181 (7%)
Query: 401 SELELVICITEGIPVRDMXXXXXXXXXXXXXXXXXGPNCPGLIVPEEIKIG--------I 452
+++ + I EGIP + GP G I P KIG I
Sbjct: 103 AQIRTIAIIAEGIP--EALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGXLDNI 160
Query: 453 MPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNE 512
+ +++ G + VSRSG + E+ ++ G V IGGD G + D + + +
Sbjct: 161 LASKLYRPGSVAYVSRSGGXSNELNNIISRTTDGVYEGVAIGGDRYPGSTFXDHVLRYQD 220
Query: 513 DQNTDAVIMIGEIGGLDEIYAANWIKK-NMKKPVIGFIAGITA---PPGKRMGHAGALIT 568
++++GEIGG +E IK+ + KP++ + G A + GHAGA
Sbjct: 221 TPGVKXIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATXFSSEVQFGHAGACAN 280
Query: 569 E 569
+
Sbjct: 281 Q 281
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 128/332 (38%), Gaps = 36/332 (10%)
Query: 3 IYEYQGKEILRKFNVT---IPKGILCMNVDEAIKAAKKIGGNSW------VIKAQIHAGG 53
I E GKE+L KF T I V A+ + + W V+K
Sbjct: 6 ISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKR 65
Query: 54 RGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKK--ELYIS 111
RGK G + + +L+ V+ + K LG + + +N LIE ++ + E Y+
Sbjct: 66 RGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNF---LIEPFVPHSQAEEFYVC 122
Query: 112 FMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXX 171
R ++F ++GG+D+ + + +LL +D +
Sbjct: 123 IYATREGDYVLF--HHEGGVDVGDVDAKAQKLLVG--VDEKLNPEDIKKHLLVHAPEDKK 178
Query: 172 XXXXXFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALF------- 224
F + N Y+ + T LEINPLV+ +K+ + LD+ D A +
Sbjct: 179 EILASFISGLFNFYEDLYFT---YLEINPLVV-TKDGVYVLDLAAKVDATADYICKVKWG 234
Query: 225 ---RHPEIISYQYAHKKYINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTI 281
P Y + YI +D + LT + G I +V G G ++ DTI
Sbjct: 235 DIEFPPPFGREAYPEEAYIADLDAKS--GASLKLTLLNPKGRIWTMVAGGGASVVYSDTI 292
Query: 282 KLFGG--EPANFLDIGGGATIKTITEAFKIMM 311
GG E AN+ + G + + + K ++
Sbjct: 293 CDLGGVNELANYGEYSGAPSEQQTYDYAKTIL 324
>pdb|1PNS|P Chain P, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
pdb|1PNX|P Chain P, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
pdb|1VOQ|P Chain P, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOS|P Chain P, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOV|P Chain P, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOX|P Chain P, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOZ|P Chain P, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|3MR8|P Chain P, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|3MS0|P Chain P, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s).
pdb|3PYN|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYQ|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The Second 70s
Ribosome.
pdb|3PYS|P Chain P, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYU|P Chain P, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The Second 70s Ribosome
Length = 83
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 785 HISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
H + TD+R RDG++IE+IG+Y+P + + K+ + R YW VGA+ + T L
Sbjct: 16 HYRIVVTDARRKRDGKYIEKIGYYDPRKTTPD-WLKVDVERARYWLSVGAQPTDTARRL- 73
Query: 845 TIGVVLRAYGIF 856
LR G+F
Sbjct: 74 -----LRQAGVF 80
>pdb|1GIX|S Chain S, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|S Chain S, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|S Chain S, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGQ|S Chain S, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1ML5|S Chain S, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
Length = 91
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 785 HISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
H + TD+R RDG++IE+IG+Y+P + + K+ + R YW VGA+ + T L
Sbjct: 19 HYRIVVTDARRKRDGKYIEKIGYYDPRKTTPD-WLKVDVERARYWLSVGAQPTDTARRL- 76
Query: 845 TIGVVLRAYGIF 856
LR G+F
Sbjct: 77 -----LRQAGVF 83
>pdb|3FIC|P Chain P, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
Length = 84
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 785 HISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
H + TD+R RDG++IE+IG+Y+P + + K+ + R YW VGA+ + T L
Sbjct: 16 HYRIVVTDARRKRDGKYIEKIGYYDPRKTTPD-WLKVDVERARYWLSVGAQPTDTARRL- 73
Query: 845 TIGVVLRAYGIF 856
LR G+F
Sbjct: 74 -----LRQAGVF 80
>pdb|1EMW|A Chain A, Solution Structure Of The Ribosomal Protein S16 From
Thermus Thermophilus
pdb|1FJG|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
pdb|1HR0|P Chain P, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNW|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1HNZ|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBK|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1IBL|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1I94|P Chain P, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I95|P Chain P, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1I96|P Chain P, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|P Chain P, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1J5E|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1N32|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
pdb|1N33|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
pdb|1N34|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
pdb|1N36|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
pdb|1XMO|P Chain P, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
pdb|1XMQ|P Chain P, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
pdb|1XNQ|P Chain P, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
pdb|1XNR|P Chain P, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
pdb|1YL4|S Chain S, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
pdb|2B64|P Chain P, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|2B9M|P Chain P, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
pdb|2B9O|P Chain P, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2F4V|P Chain P, 30s Ribosome + Designer Antibiotic
pdb|2HHH|P Chain P, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
pdb|2J00|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4).
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule I.
pdb|2J02|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4)
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule Ii.
pdb|2HGI|S Chain S, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
pdb|2HGP|S Chain S, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
pdb|2HGR|S Chain S, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
pdb|2E5L|P Chain P, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via
The Shine- Dalgarno Interaction
pdb|2OW8|QQ Chain q, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
2ow8, Contains The 30s Ribosome Subunit, Two Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File
1vsa.
pdb|2UU9|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gug-codon In The
A-site And Paromomycin.
pdb|2UUA|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guc-Codon In The
A-Site And Paromomycin.
pdb|2UUB|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guu-Codon In The
A-Site And Paromomycin.
pdb|2UUC|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gua-codon In The
A-site And Paromomycin.
pdb|2UXC|P Chain P, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Ucgu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2UXB|P Chain P, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Gggu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2V46|P Chain P, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
pdb|2V48|P Chain P, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
pdb|2UXD|P Chain P, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Cggg In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2QNH|QQ Chain q, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 2qnh, Contains The 30s
Ribosome Subunit, Two Trna, And Mrna Molecules. 50s
Ribosome Subunit Is In The File 1vsp.
pdb|2VQE|P Chain P, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
pdb|2VQF|P Chain P, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
pdb|3D5A|P Chain P, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5C|P Chain P, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1E|P Chain P, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
pdb|3F1G|P Chain P, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|2WDG|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule I.
pdb|2WDH|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule Ii.
pdb|2WDK|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule I.
pdb|2WDM|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule Ii.
pdb|2ZM6|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
pdb|2WH1|P Chain P, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH3|P Chain P, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome). This File Contains The
30s Subunit.
pdb|3HUW|P Chain P, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule I.
pdb|3HUY|P Chain P, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule Ii.
pdb|2WRI|P Chain P, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|P Chain P, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2WRN|P Chain P, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|P Chain P, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4).
pdb|3KIQ|PP Chain p, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 1 Of 4)
pdb|3KIS|PP Chain p, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 3 Of 4)
pdb|3KIU|PP Chain p, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 1 Of 4)
pdb|3KIX|PP Chain p, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 3 Of 4)
pdb|3KNH|P Chain P, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule I
pdb|3KNJ|P Chain P, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule Ii'
pdb|3KNL|P Chain P, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule I
pdb|3KNN|P Chain P, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule Ii
pdb|3I8G|S Chain S, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s
Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8H|S Chain S, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s
Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9B|S Chain S, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B.
The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9D|S Chain S, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A.
The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9R|P Chain P, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9T|P Chain P, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XFZ|P Chain P, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
pdb|2XG1|P Chain P, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
pdb|3OTO|P Chain P, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
pdb|3OGE|P Chain P, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OGY|P Chain P, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHC|P Chain P, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHD|P Chain P, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHY|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI0|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI2|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI4|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQD|P Chain P, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XSY|P Chain P, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|P Chain P, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0U|P Chain P, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|P Chain P, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Y|P Chain P, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|P Chain P, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|P Chain P, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|P Chain P, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|P Chain P, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|P Chain P, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVO|P Chain P, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3T1H|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
pdb|3T1Y|P Chain P, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
pdb|3UXS|P Chain P, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXT|P Chain P, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.'
pdb|3TVF|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVG|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3UYD|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYF|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ3|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ4|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ6|S Chain S, Structure Analysis Of Ribosomal Decoding. This Entry
Contains The 30s Ribosomal Subunit Of The First 70s
Molecule In The Asymmetric Unit For The Cognate Trna-Tyr
Complex
pdb|3UZ7|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZG|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZI|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZL|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZM|S Chain S, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABR|P Chain P, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DH9|P Chain P, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHB|P Chain P, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V22|P Chain P, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 1st Ribosome In The Asu
pdb|3V24|P Chain P, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 2nd Ribosome In The Asu
pdb|3V26|P Chain P, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 1st Ribosome In The Asu
pdb|3V28|P Chain P, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 2nd Ribosome In The Asu
pdb|3V2C|P Chain P, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 1st Ribosome In The Asu
pdb|3V2E|P Chain P, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 2nd Ribosome In The Asu
pdb|4AQY|P Chain P, Structure Of Ribosome-Apramycin Complexes
pdb|4DR1|P Chain P, Crystal Structure Of The Apo 30s Ribosomal Subunit From
Thermus Thermophilus (hb8)
pdb|4DR2|P Chain P, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR3|P Chain P, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Streptomycin Bound
pdb|4DR4|P Chain P, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Cognate Transfer Rna
Anticodon Stem-loop And Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR5|P Chain P, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Cognate Transfer Rna Anticodon Stem-loop And
Streptomycin Bound
pdb|4DR6|P Chain P, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Near-cognate Transfer Rna
Anticodon Stem-loop Mismatched At The First Codon
Position And Streptomycin Bound
pdb|4DR7|P Chain P, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Near-cognate Transfer Rna Anticodon Stem-loop
Mismatched At The Second Codon Position, And
Streptomycin Bound
pdb|4G5K|S Chain S, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5M|S Chain S, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4G5T|S Chain S, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5V|S Chain S, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4DUY|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c
pdb|4DUZ|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c, Bound
With Streptomycin
pdb|4DV0|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g
pdb|4DV1|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g, Bound
With Streptomycin
pdb|4DV2|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a
pdb|4DV3|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a, Bound
With Streptomycin
pdb|4DV4|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g
pdb|4DV5|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g, Bound
With Streptomycin
pdb|4DV6|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g
pdb|4DV7|P Chain P, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g, Bound
With Streptomycin
Length = 88
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 785 HISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
H + TD+R RDG++IE+IG+Y+P + + K+ + R YW VGA+ + T L
Sbjct: 16 HYRIVVTDARRKRDGKYIEKIGYYDPRKTTPD-WLKVDVERARYWLSVGAQPTDTARRL- 73
Query: 845 TIGVVLRAYGIF 856
LR G+F
Sbjct: 74 -----LRQAGVF 80
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 127/332 (38%), Gaps = 36/332 (10%)
Query: 3 IYEYQGKEILRKFNVT---IPKGILCMNVDEAIKAAKKIGGNSW------VIKAQIHAGG 53
I E GKE+L KF T I V A+ + + W V+K
Sbjct: 6 ISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKR 65
Query: 54 RGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKK--ELYIS 111
RGK G + + +L+ V+ + K LG + + +N LIE ++ + E Y+
Sbjct: 66 RGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNF---LIEPFVPHSQAEEFYVC 122
Query: 112 FMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTXXXXXXXXXXXXXXX 171
R ++F ++GG+D+ + + +LL +D +
Sbjct: 123 IYATREGDYVLF--HHEGGVDVGDVDAKAQKLLVG--VDEKLNPEDIKKHLLVHAPEDKK 178
Query: 172 XXXXXFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALF------- 224
F + N Y+ + T LEINPLV+ +K+ + LD+ D A +
Sbjct: 179 EILASFISGLFNFYEDLYFT---YLEINPLVV-TKDGVYVLDLAAKVDATADYICKVKWG 234
Query: 225 ---RHPEIISYQYAHKKYINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTI 281
P Y + YI +D + LT + G I V G G ++ DTI
Sbjct: 235 DIEFPPPFGREAYPEEAYIADLDAKS--GASLKLTLLNPKGRIWTXVAGGGASVVYSDTI 292
Query: 282 KLFGG--EPANFLDIGGGATIKTITEAFKIMM 311
GG E AN+ + G + + + K ++
Sbjct: 293 CDLGGVNELANYGEYSGAPSEQQTYDYAKTIL 324
>pdb|2F1L|A Chain A, Crystal Structure Of A Putative 16s Ribosomal Rna
Processing Protein Rimm (Pa3744) From Pseudomonas
Aeruginosa At 2.46 A Resolution
Length = 187
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 841 DHLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHG 899
D L+ IG ++ YGI G + + F D N+ Y R W + ++ +++ + HG
Sbjct: 18 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRR--WTLRRDG-EIRQAELVRGRLHG 74
Query: 900 NYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGT 959
+ A L G+ DR A GY + I ++ P L + +YW L V + +LLG
Sbjct: 75 KVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEEGE-YYWHQLEGLKVIDQGRQLLGV 133
Query: 960 VTEIIQ 965
+ +++
Sbjct: 134 IDHLLE 139
>pdb|2QGG|A Chain A, X-Ray Structure Of The Protein Q6f7i0 From Acinetobacter
Calcoaceticus Amms 248. Northeast Structural Genomics
Consortium Target Asr73
Length = 182
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 844 ITIGVVLRAYGIFGWILIKLFLD-DKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYV 902
I IG + AYG+ GW+ + + N F Y W+ + + ++ + K HG +
Sbjct: 12 IQIGQLRSAYGLNGWLWVYSNTEPXSNXFDYLP--WYIETKA-GWQTVDVKRWKPHGKGL 68
Query: 903 LANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNL 944
+ +L G++DR A L + I+ + PK D +YW +L
Sbjct: 69 VVSLKGVSDRTGAESLVASNIWIAKSQLPK-ADVDEYYWSDL 109
>pdb|2DYI|A Chain A, Crystal Structure Of 16s Ribosomal Rna Processing Protein
Rimm From Thermus Thermophilus Hb8
pdb|3A1P|A Chain A, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
pdb|3A1P|C Chain C, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
Length = 162
Score = 37.0 bits (84), Expect = 0.059, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 899 GNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLG 958
G ++ +L G+TDR LA L G + + D P L +Y+F LI V + G+ +G
Sbjct: 50 GEELVVHLAGVTDRTLAEALVGLRVYAEVADLPP-LEEGRYYYFALIGLPVY-VEGRQVG 107
Query: 959 TVTEII 964
V +I+
Sbjct: 108 EVVDIL 113
>pdb|3DMY|A Chain A, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
E.Coli
pdb|3DMY|B Chain B, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
E.Coli
Length = 480
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 455 GNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGG----DPINGLKYIDILKLF 510
N+ +G IGV+ SGT E+ Q+ G G + A+G+GG + G+ + L+
Sbjct: 107 ANVXPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEXL 166
Query: 511 NEDQNTDAVIMI 522
+ D+ ++ + +
Sbjct: 167 SADEKSEVLAFV 178
>pdb|1WR2|A Chain A, Crystal Structure Of Ph1788 From Pyrococcus Horikoshii
Ot3
Length = 238
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIG 39
EY+ K++L+ + + +P+ L +DEA++ AK+IG
Sbjct: 22 EYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIG 56
>pdb|3BBN|P Chain P, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 88
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 790 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVV 849
A D R+ R+GR ++++GFY+P+ S+ +L+ + + GA+ + TV ++ V
Sbjct: 21 AIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILD----FLEKGAQPTETVYDILKRAEV 76
Query: 850 LRAY 853
+ +
Sbjct: 77 FKEF 80
>pdb|3O0R|B Chain B, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody Fragment
Length = 465
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 931 PKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGI 971
P+ L+ D FYW+ ++ VE + ++G + + K+TG+
Sbjct: 192 PENLTRDKFYWWWVVHLWVEGVWELIMGAILAFVLVKITGV 232
>pdb|2VT2|A Chain A, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
pdb|2VT2|B Chain B, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
pdb|2VT3|A Chain A, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
pdb|2VT3|B Chain B, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
Length = 215
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 295 GGGATIKTITEAFKIMMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNP 354
G G + + F+ + Q+ + +++ G G T H N N N K + +N
Sbjct: 64 GYGYNVDYLLSFFRKTLDQDEMTDVILIGVGNLG-TAFLHYNFTKN-NNTKISMAFDINE 121
Query: 355 KKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATS 393
K G + +P+++ ++ +V+++ VPA+ A S
Sbjct: 122 SKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVAAQS 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,205,662
Number of Sequences: 62578
Number of extensions: 1012788
Number of successful extensions: 2251
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2138
Number of HSP's gapped (non-prelim): 52
length of query: 974
length of database: 14,973,337
effective HSP length: 108
effective length of query: 866
effective length of database: 8,214,913
effective search space: 7114114658
effective search space used: 7114114658
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)