Query psy3769
Match_columns 974
No_of_seqs 843 out of 6405
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 16:47:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0045 SucC Succinyl-CoA synt 100.0 4.8E-87 1E-91 726.5 32.0 337 1-345 1-342 (387)
2 PLN00124 succinyl-CoA ligase [ 100.0 5.6E-78 1.2E-82 686.2 34.9 338 1-344 28-377 (422)
3 PLN02235 ATP citrate (pro-S)-l 100.0 1.9E-73 4.1E-78 638.4 33.1 323 2-341 5-361 (423)
4 PRK14046 malate--CoA ligase su 100.0 1.1E-72 2.4E-77 643.7 34.7 320 1-325 1-320 (392)
5 KOG1447|consensus 100.0 4E-72 8.7E-77 572.1 21.5 339 1-344 20-368 (412)
6 TIGR01016 sucCoAbeta succinyl- 100.0 8.6E-67 1.9E-71 599.4 34.0 320 1-325 1-320 (386)
7 KOG2799|consensus 100.0 2.7E-69 5.9E-74 572.1 11.7 320 1-325 23-350 (434)
8 PRK00696 sucC succinyl-CoA syn 100.0 9.6E-61 2.1E-65 549.7 35.4 319 1-325 1-320 (388)
9 PRK05678 succinyl-CoA syntheta 100.0 7.3E-60 1.6E-64 514.8 26.0 270 313-594 6-281 (291)
10 TIGR01019 sucCoAalpha succinyl 100.0 2.3E-59 5E-64 509.7 24.9 271 313-593 4-278 (286)
11 PLN00125 Succinyl-CoA ligase [ 100.0 1.5E-57 3.3E-62 496.7 23.9 274 310-593 7-286 (300)
12 TIGR02717 AcCoA-syn-alpha acet 100.0 3.9E-56 8.5E-61 518.3 25.3 289 313-628 6-310 (447)
13 PTZ00187 succinyl-CoA syntheta 100.0 7.5E-56 1.6E-60 483.9 24.9 272 308-586 22-300 (317)
14 PF08442 ATP-grasp_2: ATP-gras 100.0 7.3E-47 1.6E-51 392.3 19.0 202 2-203 1-202 (202)
15 COG1042 Acyl-CoA synthetase (N 100.0 7.6E-45 1.7E-49 428.5 19.0 291 313-631 9-317 (598)
16 PLN02522 ATP citrate (pro-S)-l 100.0 4.4E-43 9.5E-48 411.4 25.4 262 312-586 7-301 (608)
17 COG0074 SucD Succinyl-CoA synt 100.0 8.8E-42 1.9E-46 357.9 23.1 252 310-569 3-255 (293)
18 KOG1255|consensus 100.0 1E-37 2.3E-42 315.2 21.5 268 309-583 32-307 (329)
19 TIGR03716 R_switched_YkoY inte 100.0 8.5E-39 1.8E-43 332.3 13.3 167 589-761 2-174 (215)
20 PF03741 TerC: Integral membra 100.0 1.1E-37 2.4E-42 319.2 15.7 169 586-760 2-183 (183)
21 TIGR03717 R_switched_YjbE inte 100.0 2.9E-36 6.3E-41 306.6 14.8 172 585-761 3-176 (176)
22 COG0861 TerC Membrane protein 100.0 1.8E-35 3.9E-40 314.8 13.2 180 579-764 15-215 (254)
23 TIGR03718 R_switched_Alx integ 100.0 2.1E-35 4.6E-40 319.1 12.2 179 578-762 59-271 (302)
24 PRK06091 membrane protein FdrA 100.0 6.3E-33 1.4E-37 319.3 24.8 183 360-558 101-294 (555)
25 PF13549 ATP-grasp_5: ATP-gras 100.0 2.4E-33 5.2E-38 295.7 17.2 197 3-218 10-222 (222)
26 PF13607 Succ_CoA_lig: Succiny 100.0 1.1E-31 2.3E-36 262.8 8.4 120 460-586 1-126 (138)
27 PRK14591 rimM 16S rRNA-process 100.0 1.3E-30 2.9E-35 264.8 14.4 133 841-974 3-135 (169)
28 COG0806 RimM RimM protein, req 100.0 1.7E-30 3.8E-35 261.4 13.6 132 841-974 5-136 (174)
29 PRK00122 rimM 16S rRNA-process 100.0 2E-29 4.4E-34 257.5 13.7 134 838-974 2-135 (172)
30 PRK14590 rimM 16S rRNA-process 100.0 3.4E-29 7.3E-34 254.4 14.2 131 844-974 1-133 (171)
31 PRK14594 rimM 16S rRNA-process 100.0 1.5E-28 3.3E-33 248.9 13.6 128 844-974 2-131 (166)
32 PRK14592 rimM 16S rRNA-process 100.0 1.2E-28 2.6E-33 249.7 12.8 126 842-974 1-127 (165)
33 TIGR02273 16S_RimM 16S rRNA pr 100.0 1.7E-28 3.6E-33 249.2 13.8 130 843-974 1-130 (165)
34 PRK14593 rimM 16S rRNA-process 100.0 4.1E-28 8.8E-33 250.0 12.8 129 842-974 3-138 (184)
35 PRK13829 rimM 16S rRNA-process 99.9 1.2E-27 2.6E-32 241.4 12.5 122 842-974 2-123 (162)
36 PRK13828 rimM 16S rRNA-process 99.9 1E-25 2.2E-30 227.3 14.2 115 855-974 1-115 (161)
37 PRK00040 rpsP 30S ribosomal pr 99.9 3.2E-24 7E-29 185.0 6.0 62 783-844 14-75 (75)
38 TIGR00002 S16 ribosomal protei 99.9 3.7E-24 8E-29 186.1 6.2 65 783-849 13-77 (78)
39 CHL00005 rps16 ribosomal prote 99.9 4.3E-24 9.3E-29 186.7 5.8 67 783-853 14-80 (82)
40 COG0228 RpsP Ribosomal protein 99.9 3.6E-24 7.8E-29 186.0 5.0 65 783-848 14-78 (87)
41 PRK14524 rpsP 30S ribosomal pr 99.9 6.2E-24 1.3E-28 190.5 5.7 67 783-851 14-80 (94)
42 PRK14525 rpsP 30S ribosomal pr 99.9 9.2E-24 2E-28 186.8 6.1 66 783-850 15-80 (88)
43 PRK14523 rpsP 30S ribosomal pr 99.9 7.3E-24 1.6E-28 198.8 5.6 78 783-860 14-91 (137)
44 KOG3419|consensus 99.9 1.4E-23 3.1E-28 186.5 5.2 70 784-853 16-86 (112)
45 PRK14013 hypothetical protein; 99.9 9.9E-23 2.1E-27 220.4 12.7 177 586-768 34-310 (338)
46 PRK14520 rpsP 30S ribosomal pr 99.9 3.9E-23 8.3E-28 199.8 6.0 73 783-857 15-88 (155)
47 PRK14521 rpsP 30S ribosomal pr 99.9 8.1E-23 1.8E-27 203.1 5.8 77 783-861 15-91 (186)
48 PRK14522 rpsP 30S ribosomal pr 99.9 1.7E-22 3.7E-27 184.9 5.1 61 783-846 15-75 (116)
49 PF00886 Ribosomal_S16: Riboso 99.8 2.2E-21 4.7E-26 162.5 6.0 55 783-837 7-62 (62)
50 PF13380 CoA_binding_2: CoA bi 99.8 5.2E-21 1.1E-25 182.9 7.0 109 323-445 5-116 (116)
51 COG1832 Predicted CoA-binding 99.7 7.6E-18 1.6E-22 160.0 7.6 124 307-443 9-132 (140)
52 PF01782 RimM: RimM N-terminal 99.7 2.2E-17 4.8E-22 148.8 9.6 84 845-929 1-84 (84)
53 PF01071 GARS_A: Phosphoribosy 99.4 1.5E-11 3.2E-16 127.0 17.9 174 7-221 5-192 (194)
54 COG2899 Uncharacterized protei 99.3 4E-13 8.6E-18 140.1 -0.3 175 588-768 43-318 (346)
55 PF04332 DUF475: Protein of un 99.3 8.3E-13 1.8E-17 140.5 0.7 168 596-769 1-272 (294)
56 COG0151 PurD Phosphoribosylami 99.1 1.4E-09 3E-14 122.1 18.7 101 8-121 107-207 (428)
57 PLN02257 phosphoribosylamine-- 99.1 1E-08 2.2E-13 120.0 21.4 101 4-117 102-202 (434)
58 PRK13789 phosphoribosylamine-- 99.0 2.7E-09 5.8E-14 124.7 16.1 101 4-117 108-208 (426)
59 PF07478 Dala_Dala_lig_C: D-al 99.0 2.7E-09 5.8E-14 112.4 14.1 160 11-215 1-172 (203)
60 KOG1254|consensus 99.0 2.6E-09 5.7E-14 119.6 12.8 201 364-569 55-272 (600)
61 TIGR01161 purK phosphoribosyla 99.0 1.9E-08 4.1E-13 115.1 20.2 168 4-219 98-266 (352)
62 PRK01372 ddl D-alanine--D-alan 99.0 2.1E-08 4.5E-13 112.3 19.5 169 4-214 98-266 (304)
63 PF02786 CPSase_L_D2: Carbamoy 99.0 2.3E-08 5.1E-13 105.8 18.6 174 6-217 3-179 (211)
64 PF02222 ATP-grasp: ATP-grasp 98.9 1.9E-08 4.2E-13 102.8 15.9 153 12-211 1-154 (172)
65 PRK06019 phosphoribosylaminoim 98.9 3.8E-08 8.3E-13 113.4 20.3 163 5-215 101-264 (372)
66 TIGR00514 accC acetyl-CoA carb 98.9 3.2E-08 6.9E-13 116.9 19.7 174 4-215 115-290 (449)
67 PRK13790 phosphoribosylamine-- 98.9 6.5E-08 1.4E-12 111.7 20.7 97 4-117 67-163 (379)
68 PRK12815 carB carbamoyl phosph 98.9 4.9E-08 1.1E-12 126.1 21.1 98 6-119 130-227 (1068)
69 PLN02948 phosphoribosylaminoim 98.9 6.9E-08 1.5E-12 116.7 20.7 165 4-214 121-286 (577)
70 PRK00885 phosphoribosylamine-- 98.9 4.5E-08 9.7E-13 114.7 18.1 101 4-117 102-202 (420)
71 TIGR00877 purD phosphoribosyla 98.9 4.9E-08 1.1E-12 114.4 18.5 100 4-117 104-204 (423)
72 PRK01966 ddl D-alanyl-alanine 98.9 3.3E-08 7.1E-13 112.2 16.1 171 4-214 123-297 (333)
73 PRK09288 purT phosphoribosylgl 98.9 1.3E-07 2.7E-12 110.0 21.0 171 5-218 114-285 (395)
74 PRK05586 biotin carboxylase; V 98.9 9.3E-08 2E-12 112.9 19.8 173 4-214 115-289 (447)
75 COG1042 Acyl-CoA synthetase (N 98.9 1.8E-09 3.8E-14 129.2 5.1 124 2-151 470-593 (598)
76 PF00549 Ligase_CoA: CoA-ligas 98.9 2.3E-09 5E-14 106.9 5.1 59 267-325 1-83 (153)
77 PRK14572 D-alanyl-alanine synt 98.8 7.8E-08 1.7E-12 109.8 18.0 168 4-214 130-311 (347)
78 PRK14568 vanB D-alanine--D-lac 98.8 8.4E-08 1.8E-12 109.4 16.8 165 4-214 132-306 (343)
79 PF13535 ATP-grasp_4: ATP-gras 98.8 2.2E-07 4.7E-12 95.4 18.3 97 4-115 4-100 (184)
80 PRK08591 acetyl-CoA carboxylas 98.8 2E-07 4.4E-12 110.2 20.5 174 4-215 115-290 (451)
81 PRK07178 pyruvate carboxylase 98.8 1.7E-07 3.7E-12 111.4 19.6 173 4-214 114-288 (472)
82 PRK12833 acetyl-CoA carboxylas 98.8 2.1E-07 4.6E-12 110.4 20.3 172 4-214 118-292 (467)
83 PRK14570 D-alanyl-alanine synt 98.8 1.6E-07 3.4E-12 107.8 18.2 167 4-214 129-312 (364)
84 PRK14569 D-alanyl-alanine synt 98.8 1.2E-07 2.6E-12 105.9 16.3 164 4-214 98-261 (296)
85 TIGR01142 purT phosphoribosylg 98.8 4.6E-07 1E-11 104.7 21.2 169 4-215 100-269 (380)
86 TIGR01205 D_ala_D_alaTIGR D-al 98.8 4E-07 8.6E-12 102.4 19.8 170 4-214 105-281 (315)
87 PRK08654 pyruvate carboxylase 98.8 3E-07 6.5E-12 109.7 19.5 172 4-214 115-288 (499)
88 PLN02735 carbamoyl-phosphate s 98.7 1.3E-07 2.9E-12 121.9 17.2 100 5-119 145-244 (1102)
89 PRK14573 bifunctional D-alanyl 98.7 2E-07 4.4E-12 117.8 18.5 169 4-214 568-752 (809)
90 PRK06111 acetyl-CoA carboxylas 98.7 3.4E-07 7.5E-12 108.2 19.3 174 4-215 115-290 (450)
91 PLN02735 carbamoyl-phosphate s 98.7 4.7E-07 1E-11 116.9 21.3 168 5-215 703-873 (1102)
92 PRK08462 biotin carboxylase; V 98.7 4.1E-07 9E-12 107.4 19.3 173 4-214 117-291 (445)
93 PRK08463 acetyl-CoA carboxylas 98.7 6.7E-07 1.4E-11 106.5 19.3 173 5-215 115-290 (478)
94 PRK05294 carB carbamoyl phosph 98.7 2.2E-07 4.8E-12 120.5 16.5 99 5-119 129-227 (1066)
95 TIGR01369 CPSaseII_lrg carbamo 98.7 6.2E-07 1.3E-11 116.0 20.4 99 5-119 128-226 (1050)
96 PF02629 CoA_binding: CoA bind 98.7 4.5E-08 9.8E-13 90.6 6.9 72 340-412 25-96 (96)
97 PRK06395 phosphoribosylamine-- 98.6 6.9E-07 1.5E-11 104.9 18.2 180 5-221 106-296 (435)
98 COG0026 PurK Phosphoribosylami 98.6 9.9E-07 2.2E-11 98.2 18.0 160 6-211 101-260 (375)
99 COG0458 CarB Carbamoylphosphat 98.6 2.1E-07 4.6E-12 104.6 12.8 99 6-121 118-216 (400)
100 PRK05784 phosphoribosylamine-- 98.6 5.9E-07 1.3E-11 106.5 17.1 101 4-117 109-219 (486)
101 COG0439 AccC Biotin carboxylas 98.6 9.9E-07 2.1E-11 102.5 18.3 173 5-215 116-290 (449)
102 TIGR02712 urea_carbox urea car 98.6 1E-06 2.2E-11 114.4 19.7 102 4-117 114-216 (1201)
103 PRK07206 hypothetical protein; 98.6 1.9E-06 4.2E-11 100.8 18.2 100 4-115 108-210 (416)
104 TIGR01235 pyruv_carbox pyruvat 98.5 2.7E-06 5.8E-11 109.5 20.0 102 4-117 115-218 (1143)
105 PRK14571 D-alanyl-alanine synt 98.5 1.8E-06 3.9E-11 96.5 15.8 167 4-214 95-261 (299)
106 PRK12999 pyruvate carboxylase; 98.5 3.3E-06 7.1E-11 109.2 20.2 102 4-117 119-222 (1146)
107 TIGR01369 CPSaseII_lrg carbamo 98.5 3.6E-06 7.9E-11 109.0 20.3 95 6-116 671-765 (1050)
108 PRK06524 biotin carboxylase-li 98.5 1.9E-06 4.2E-11 100.6 14.9 174 4-220 142-325 (493)
109 PRK02186 argininosuccinate lya 98.4 2.8E-06 6.1E-11 108.4 17.2 165 5-214 108-273 (887)
110 PRK05294 carB carbamoyl phosph 98.4 6.6E-06 1.4E-10 106.9 20.4 97 5-117 670-766 (1066)
111 PRK10446 ribosomal protein S6 98.4 4E-06 8.8E-11 93.8 16.0 96 4-116 99-196 (300)
112 COG0027 PurT Formate-dependent 98.4 4E-06 8.6E-11 90.4 14.5 152 14-207 124-275 (394)
113 KOG0237|consensus 98.4 1.4E-06 3E-11 100.1 10.4 103 7-121 111-213 (788)
114 PRK14016 cyanophycin synthetas 98.4 2.1E-06 4.4E-11 106.9 12.2 92 4-114 214-306 (727)
115 KOG1254|consensus 98.3 1E-07 2.2E-12 107.1 0.4 256 41-310 80-394 (600)
116 PRK12815 carB carbamoyl phosph 98.3 1.6E-05 3.4E-10 103.2 20.4 92 6-116 672-763 (1068)
117 PF08443 RimK: RimK-like ATP-g 98.3 1.3E-06 2.9E-11 91.1 8.6 93 6-116 5-100 (190)
118 TIGR02068 cya_phycin_syn cyano 98.3 2.2E-06 4.8E-11 108.6 12.2 93 4-115 213-306 (864)
119 TIGR02144 LysX_arch Lysine bio 98.3 1.5E-05 3.3E-10 88.0 17.0 95 5-113 88-183 (280)
120 TIGR00768 rimK_fam alpha-L-glu 98.3 2.4E-05 5.2E-10 86.0 17.5 87 4-105 88-174 (277)
121 COG4770 Acetyl/propionyl-CoA c 98.3 2.2E-05 4.7E-10 90.8 17.3 172 6-215 117-290 (645)
122 KOG0238|consensus 98.2 2.6E-05 5.7E-10 88.6 16.7 170 6-216 113-287 (670)
123 PRK12767 carbamoyl phosphate s 98.2 2.6E-05 5.6E-10 88.2 16.8 96 5-124 112-209 (326)
124 PRK13278 purP 5-formaminoimida 98.2 2.7E-05 5.8E-10 88.7 16.3 88 6-116 125-212 (358)
125 TIGR01435 glu_cys_lig_rel glut 98.2 6.8E-06 1.5E-10 100.8 12.2 94 5-116 476-572 (737)
126 PRK02471 bifunctional glutamat 98.1 1.3E-05 2.9E-10 99.6 11.7 92 4-114 488-583 (752)
127 PF00549 Ligase_CoA: CoA-ligas 98.0 1.5E-05 3.1E-10 79.9 8.6 102 466-567 1-133 (153)
128 TIGR03103 trio_acet_GNAT GNAT- 97.9 5.4E-05 1.2E-09 91.5 11.8 92 4-115 297-389 (547)
129 COG0189 RimK Glutathione synth 97.9 7.7E-05 1.7E-09 83.9 11.4 92 7-115 122-215 (318)
130 COG1181 DdlA D-alanine-D-alani 97.8 0.00022 4.7E-09 80.2 13.0 166 5-213 104-281 (317)
131 PRK06849 hypothetical protein; 97.7 0.00076 1.6E-08 78.4 17.3 89 4-114 116-205 (389)
132 COG1038 PycA Pyruvate carboxyl 97.7 0.001 2.2E-08 79.6 16.6 163 6-203 123-300 (1149)
133 PRK13277 5-formaminoimidazole- 97.6 0.0017 3.6E-08 73.5 16.4 92 7-119 129-222 (366)
134 PF15632 ATPgrasp_Ter: ATP-gra 97.5 0.0011 2.4E-08 74.7 14.2 103 5-121 108-222 (329)
135 KOG0369|consensus 97.5 0.0017 3.6E-08 76.1 15.2 148 6-188 149-298 (1176)
136 TIGR00036 dapB dihydrodipicoli 97.5 0.00036 7.9E-09 76.8 9.7 114 323-444 6-133 (266)
137 TIGR03717 R_switched_YjbE inte 97.4 0.00046 1E-08 71.0 8.8 81 680-761 2-82 (176)
138 PF01113 DapB_N: Dihydrodipico 97.4 0.00041 8.9E-09 67.4 7.6 106 323-438 5-123 (124)
139 PF03741 TerC: Integral membra 97.3 0.0009 1.9E-08 69.4 8.3 80 682-762 2-82 (183)
140 TIGR02717 AcCoA-syn-alpha acet 97.0 0.0012 2.6E-08 78.1 7.4 64 261-324 295-379 (447)
141 PF01914 MarC: MarC family int 97.0 0.0082 1.8E-07 63.4 12.7 68 597-664 19-91 (203)
142 PF02655 ATP-grasp_3: ATP-gras 96.9 0.002 4.3E-08 65.5 7.1 81 4-116 3-83 (161)
143 PRK00048 dihydrodipicolinate r 96.9 0.0037 8E-08 68.5 9.2 112 323-443 6-122 (257)
144 PF05239 PRC: PRC-barrel domai 96.8 0.0012 2.5E-08 58.6 3.4 37 936-972 1-38 (79)
145 TIGR02291 rimK_rel_E_lig alpha 96.7 0.057 1.2E-06 60.7 16.9 57 6-66 39-97 (317)
146 PRK10739 putative antibiotic t 96.7 0.028 6E-07 59.0 13.2 68 597-664 19-91 (197)
147 PLN02941 inositol-tetrakisphos 96.6 0.007 1.5E-07 68.3 9.3 78 6-105 109-196 (328)
148 TIGR00427 membrane protein, Ma 96.6 0.033 7.1E-07 58.7 13.3 69 596-664 21-94 (201)
149 KOG0370|consensus 96.5 0.0016 3.5E-08 78.9 3.4 120 12-159 506-628 (1435)
150 COG2095 MarC Multiple antibiot 96.5 0.033 7.1E-07 58.6 12.7 69 596-664 21-94 (203)
151 PRK11111 hypothetical protein; 96.3 0.057 1.2E-06 57.4 13.3 67 597-663 25-96 (214)
152 PLN02775 Probable dihydrodipic 96.3 0.017 3.7E-07 63.6 9.5 114 323-445 16-143 (286)
153 TIGR03716 R_switched_YkoY inte 96.2 0.013 2.8E-07 62.2 7.3 76 685-761 2-77 (215)
154 TIGR03718 R_switched_Alx integ 96.1 0.025 5.4E-07 62.8 9.7 85 676-761 61-148 (302)
155 PRK10995 inner membrane protei 96.1 0.1 2.2E-06 56.0 14.1 68 597-664 23-95 (221)
156 COG0289 DapB Dihydrodipicolina 96.1 0.026 5.7E-07 61.0 9.3 112 323-443 7-131 (266)
157 COG0861 TerC Membrane protein 96.0 0.032 6.8E-07 60.7 9.7 90 675-764 15-104 (254)
158 COG1971 Predicted membrane pro 96.0 0.12 2.6E-06 53.3 13.1 112 644-762 68-188 (190)
159 KOG0368|consensus 96.0 0.07 1.5E-06 68.1 13.4 137 24-202 224-377 (2196)
160 PRK13304 L-aspartate dehydroge 95.9 0.018 4E-07 63.4 7.3 104 323-435 6-117 (265)
161 PRK12458 glutathione synthetas 95.8 0.06 1.3E-06 61.5 11.3 77 17-111 139-219 (338)
162 TIGR02130 dapB_plant dihydrodi 95.8 0.026 5.7E-07 61.9 7.8 112 323-444 5-131 (275)
163 PRK11469 hypothetical protein; 95.7 0.092 2E-06 54.8 11.1 107 644-761 68-185 (188)
164 PF01408 GFO_IDH_MocA: Oxidore 95.7 0.024 5.2E-07 54.0 6.3 100 329-434 10-116 (120)
165 PF01810 LysE: LysE type trans 95.6 0.31 6.6E-06 50.7 14.9 115 644-761 61-191 (191)
166 COG3919 Predicted ATP-grasp en 95.6 0.03 6.4E-07 60.7 7.0 98 10-126 120-223 (415)
167 COG2344 AT-rich DNA-binding pr 95.5 0.05 1.1E-06 55.7 7.9 112 295-411 63-179 (211)
168 COG1759 5-formaminoimidazole-4 95.1 0.089 1.9E-06 57.9 9.1 86 9-115 129-214 (361)
169 TIGR01380 glut_syn glutathione 95.1 0.32 6.9E-06 55.0 13.8 82 13-112 128-212 (312)
170 PRK13303 L-aspartate dehydroge 95.1 0.067 1.5E-06 59.0 8.1 104 323-435 6-117 (265)
171 PRK13302 putative L-aspartate 94.9 0.051 1.1E-06 60.1 6.6 104 322-435 10-120 (271)
172 PF03596 Cad: Cadmium resistan 94.8 0.34 7.4E-06 50.5 12.0 162 595-768 5-189 (191)
173 PF14397 ATPgrasp_ST: Sugar-tr 94.3 0.94 2E-05 50.5 15.0 184 6-215 28-255 (285)
174 TIGR03855 NAD_NadX aspartate d 94.0 0.17 3.7E-06 54.5 8.0 70 362-435 22-93 (229)
175 PF03446 NAD_binding_2: NAD bi 93.5 0.069 1.5E-06 54.3 3.7 104 324-436 7-117 (163)
176 COG2119 Predicted membrane pro 93.4 2.8 6.1E-05 43.1 14.9 157 596-760 17-184 (190)
177 PRK10958 leucine export protei 93.2 2 4.3E-05 45.7 14.4 67 594-664 24-98 (212)
178 PRK10323 cysteine/O-acetylseri 92.9 3.3 7.1E-05 43.5 15.4 66 595-664 21-94 (195)
179 KOG0370|consensus 92.9 0.41 8.8E-06 59.2 9.4 170 9-221 1038-1208(1435)
180 COG1280 RhtB Putative threonin 92.6 3 6.5E-05 44.3 14.8 159 595-761 21-207 (208)
181 TIGR01761 thiaz-red thiazoliny 92.6 0.36 7.9E-06 55.1 8.3 97 330-435 13-119 (343)
182 PRK05472 redox-sensing transcr 92.6 0.41 8.9E-06 51.0 8.2 107 297-410 65-178 (213)
183 COG0673 MviM Predicted dehydro 91.8 0.46 1E-05 53.8 7.9 73 362-438 50-126 (342)
184 PRK09304 arginine exporter pro 91.7 6.6 0.00014 41.5 16.1 21 644-664 71-91 (207)
185 PRK10206 putative oxidoreducta 90.5 0.74 1.6E-05 52.7 8.0 70 363-435 49-119 (344)
186 PF10727 Rossmann-like: Rossma 90.2 0.5 1.1E-05 46.1 5.4 87 322-416 14-109 (127)
187 PRK11579 putative oxidoreducta 90.2 0.76 1.7E-05 52.6 7.8 69 363-434 49-118 (346)
188 PRK12490 6-phosphogluconate de 90.2 0.61 1.3E-05 52.3 6.8 106 323-435 5-116 (299)
189 TIGR00949 2A76 The Resistance 90.1 3.9 8.5E-05 42.2 12.3 20 644-663 56-75 (185)
190 PRK00696 sucC succinyl-CoA syn 90.0 1.2 2.6E-05 51.9 9.4 90 461-551 257-351 (388)
191 TIGR01016 sucCoAbeta succinyl- 89.9 1.2 2.5E-05 52.0 9.0 91 460-552 256-352 (386)
192 PRK09599 6-phosphogluconate de 89.8 0.77 1.7E-05 51.5 7.3 103 324-435 6-116 (301)
193 PRK05246 glutathione synthetas 89.7 1.4 3E-05 49.9 9.3 78 18-113 134-214 (316)
194 PRK10520 rhtB homoserine/homos 89.5 14 0.00029 39.0 16.0 21 644-664 74-94 (205)
195 PRK05479 ketol-acid reductoiso 89.4 0.57 1.2E-05 53.1 5.7 110 323-443 22-136 (330)
196 TIGR00872 gnd_rel 6-phosphoglu 88.9 1 2.2E-05 50.6 7.3 105 323-436 5-116 (298)
197 TIGR01692 HIBADH 3-hydroxyisob 88.9 1.1 2.5E-05 49.8 7.7 99 328-436 5-113 (288)
198 TIGR00465 ilvC ketol-acid redu 88.6 0.82 1.8E-05 51.7 6.3 109 323-442 8-121 (314)
199 TIGR02840 spore_YtaF putative 88.5 4.9 0.00011 42.7 11.7 20 644-663 62-81 (206)
200 PRK11559 garR tartronate semia 87.9 1.5 3.3E-05 48.9 7.9 102 323-435 7-118 (296)
201 PRK07680 late competence prote 87.0 1.5 3.2E-05 48.5 7.0 106 322-438 4-118 (273)
202 TIGR01505 tartro_sem_red 2-hyd 87.0 1.7 3.7E-05 48.4 7.6 104 323-437 4-117 (291)
203 PF02955 GSH-S_ATP: Prokaryoti 86.6 1.5 3.3E-05 45.2 6.3 68 19-104 12-80 (173)
204 PRK15059 tartronate semialdehy 86.5 1.2 2.7E-05 49.8 6.2 105 323-436 5-116 (292)
205 PRK14046 malate--CoA ligase su 85.9 1.7 3.7E-05 50.7 7.1 91 461-552 257-352 (392)
206 PRK07634 pyrroline-5-carboxyla 85.8 2.2 4.7E-05 46.1 7.5 110 323-439 9-124 (245)
207 PRK10229 threonine efflux syst 85.5 25 0.00054 37.0 15.2 21 644-664 73-93 (206)
208 COG2451 Ribosomal protein L35A 84.0 1.7 3.6E-05 39.4 4.4 29 898-926 24-52 (100)
209 PF07991 IlvN: Acetohydroxy ac 83.9 1.1 2.4E-05 45.4 3.7 106 329-444 14-124 (165)
210 PTZ00431 pyrroline carboxylate 83.7 3.2 7E-05 45.5 7.7 91 323-419 8-99 (260)
211 PRK15461 NADH-dependent gamma- 83.4 2.6 5.7E-05 47.1 7.0 102 323-435 6-117 (296)
212 PLN02350 phosphogluconate dehy 83.0 3.2 7E-05 49.8 7.8 109 324-441 12-135 (493)
213 PRK00436 argC N-acetyl-gamma-g 82.7 2.5 5.4E-05 48.4 6.6 88 323-415 7-104 (343)
214 TIGR01745 asd_gamma aspartate- 82.6 3.2 7E-05 47.7 7.3 116 322-443 4-138 (366)
215 PRK14013 hypothetical protein; 82.5 5.9 0.00013 44.6 9.0 86 677-762 29-139 (338)
216 COG0059 IlvC Ketol-acid reduct 82.3 3.3 7.1E-05 45.9 6.8 103 329-441 28-135 (338)
217 TIGR00873 gnd 6-phosphoglucona 82.1 3.6 7.9E-05 49.1 7.8 109 323-441 4-126 (467)
218 PRK00094 gpsA NAD(P)H-dependen 81.7 2 4.3E-05 48.4 5.2 52 363-416 58-111 (325)
219 PRK13403 ketol-acid reductoiso 81.4 1.7 3.7E-05 49.0 4.3 110 324-444 22-135 (335)
220 PF03807 F420_oxidored: NADP o 81.4 2 4.3E-05 39.1 4.2 69 324-398 5-81 (96)
221 COG1279 Lysine efflux permease 81.1 33 0.00071 36.1 13.2 155 593-760 18-201 (202)
222 PRK12491 pyrroline-5-carboxyla 80.5 4 8.6E-05 45.2 6.9 111 323-440 7-123 (272)
223 PLN02256 arogenate dehydrogena 80.2 4.4 9.5E-05 45.7 7.2 71 323-399 41-113 (304)
224 PRK07679 pyrroline-5-carboxyla 79.8 7.7 0.00017 43.0 9.0 92 323-417 8-106 (279)
225 PRK06476 pyrroline-5-carboxyla 79.7 3.7 8.1E-05 44.9 6.4 92 322-417 4-100 (258)
226 PRK09287 6-phosphogluconate de 79.5 5.1 0.00011 47.8 7.8 105 331-441 2-117 (459)
227 PRK08655 prephenate dehydrogen 79.2 5.2 0.00011 47.5 7.8 74 323-401 5-81 (437)
228 PRK14618 NAD(P)H-dependent gly 78.9 2.7 5.9E-05 47.7 5.2 94 324-426 10-122 (328)
229 PRK06091 membrane protein FdrA 78.9 1.5 3.3E-05 52.6 3.1 109 261-374 193-309 (555)
230 COG0240 GpsA Glycerol-3-phosph 78.9 3.5 7.6E-05 46.5 5.8 61 363-426 58-121 (329)
231 PRK13301 putative L-aspartate 78.6 8.7 0.00019 42.2 8.6 101 329-435 12-118 (267)
232 PRK06928 pyrroline-5-carboxyla 78.3 7.3 0.00016 43.2 8.2 93 323-419 6-107 (277)
233 PRK06545 prephenate dehydrogen 78.2 6.8 0.00015 45.2 8.2 105 323-437 5-118 (359)
234 PF13460 NAD_binding_10: NADH( 78.0 2.3 5.1E-05 43.3 3.9 81 323-411 3-98 (183)
235 PRK11880 pyrroline-5-carboxyla 77.2 5 0.00011 44.0 6.4 88 323-416 7-100 (267)
236 PF10100 DUF2338: Uncharacteri 76.9 11 0.00023 43.6 8.9 116 290-417 3-125 (429)
237 COG2084 MmsB 3-hydroxyisobutyr 76.9 9 0.0002 42.7 8.3 113 328-446 9-129 (286)
238 PLN00124 succinyl-CoA ligase [ 75.7 6.7 0.00014 46.2 7.2 97 461-559 292-394 (422)
239 PLN02688 pyrroline-5-carboxyla 75.2 9.4 0.0002 41.8 8.0 90 323-417 5-102 (266)
240 COG0345 ProC Pyrroline-5-carbo 75.0 6.6 0.00014 43.3 6.5 109 327-445 9-125 (266)
241 PTZ00142 6-phosphogluconate de 74.8 8.3 0.00018 46.2 7.8 109 324-441 7-129 (470)
242 PLN02712 arogenate dehydrogena 74.8 6.1 0.00013 49.4 7.0 73 322-400 373-447 (667)
243 COG1873 Protein implicated in 74.4 2.6 5.6E-05 38.4 2.7 28 937-964 4-31 (87)
244 KOG2741|consensus 73.7 9.1 0.0002 43.3 7.2 77 365-445 59-136 (351)
245 TIGR01921 DAP-DH diaminopimela 73.7 7.1 0.00015 44.3 6.5 102 328-436 12-118 (324)
246 PRK04337 50S ribosomal protein 72.4 4.9 0.00011 36.4 3.8 28 898-925 18-45 (87)
247 COG1712 Predicted dinucleotide 72.2 13 0.00029 39.7 7.6 68 363-435 47-116 (255)
248 COG0045 SucC Succinyl-CoA synt 72.0 14 0.00029 42.5 8.1 98 461-559 256-358 (387)
249 COG1184 GCD2 Translation initi 71.5 23 0.0005 39.6 9.7 106 378-489 119-226 (301)
250 PF13607 Succ_CoA_lig: Succiny 71.3 6.5 0.00014 39.0 4.9 90 261-355 1-90 (138)
251 PRK07502 cyclohexadienyl dehyd 71.2 9.3 0.0002 42.9 6.8 107 323-439 11-125 (307)
252 PRK08507 prephenate dehydrogen 71.0 11 0.00024 41.6 7.2 82 323-413 5-92 (275)
253 PF14398 ATPgrasp_YheCD: YheC/ 70.8 1.7E+02 0.0037 32.2 17.7 51 3-55 17-70 (262)
254 TIGR00948 2a75 L-lysine export 70.4 5.9 0.00013 40.7 4.6 21 644-664 57-77 (177)
255 cd07018 S49_SppA_67K_type Sign 70.1 8 0.00017 41.4 5.7 50 502-551 33-87 (222)
256 PRK05849 hypothetical protein; 70.0 1.8E+02 0.0039 37.2 18.2 181 9-217 15-215 (783)
257 PLN02858 fructose-bisphosphate 69.9 9.3 0.0002 51.7 7.4 111 322-443 328-451 (1378)
258 PRK11199 tyrA bifunctional cho 69.8 30 0.00065 40.2 10.7 71 323-410 103-173 (374)
259 PF05368 NmrA: NmrA-like famil 69.7 4.8 0.0001 42.9 3.9 81 323-410 3-101 (233)
260 PRK14806 bifunctional cyclohex 69.6 14 0.00031 46.8 8.7 104 323-435 8-119 (735)
261 PRK07417 arogenate dehydrogena 69.5 7.3 0.00016 43.2 5.4 83 323-414 5-94 (279)
262 PRK06598 aspartate-semialdehyd 68.9 15 0.00032 42.6 7.7 114 322-442 5-138 (369)
263 COG0136 Asd Aspartate-semialde 68.8 19 0.00041 40.9 8.4 114 322-442 5-136 (334)
264 cd07022 S49_Sppa_36K_type Sign 68.7 11 0.00024 40.1 6.4 53 501-553 28-84 (214)
265 PF02593 dTMP_synthase: Thymid 68.7 20 0.00044 38.3 8.2 108 328-445 6-117 (217)
266 TIGR00779 cad cadmium resistan 68.2 31 0.00067 36.2 9.2 70 595-665 5-77 (193)
267 PLN02819 lysine-ketoglutarate 67.9 9 0.0002 49.9 6.4 72 367-446 636-708 (1042)
268 cd00394 Clp_protease_like Case 67.6 12 0.00025 37.7 6.1 52 502-553 15-68 (161)
269 PRK04207 glyceraldehyde-3-phos 67.6 11 0.00023 43.4 6.3 46 363-412 65-110 (341)
270 cd07014 S49_SppA Signal peptid 67.5 13 0.00027 38.3 6.4 52 502-553 26-82 (177)
271 cd07023 S49_Sppa_N_C Signal pe 67.0 14 0.00031 39.0 6.8 52 502-553 21-77 (208)
272 TIGR03376 glycerol3P_DH glycer 67.0 15 0.00032 42.2 7.3 52 363-416 69-122 (342)
273 TIGR01850 argC N-acetyl-gamma- 66.8 9.2 0.0002 43.9 5.7 88 323-415 5-104 (346)
274 cd07019 S49_SppA_1 Signal pept 66.6 13 0.00028 39.5 6.4 53 501-553 24-81 (211)
275 PF01118 Semialdhyde_dh: Semia 65.3 9.3 0.0002 36.6 4.6 36 378-414 66-101 (121)
276 PRK08818 prephenate dehydrogen 64.8 23 0.0005 41.1 8.4 65 323-401 9-74 (370)
277 PTZ00187 succinyl-CoA syntheta 64.7 11 0.00024 42.6 5.6 61 260-320 168-229 (317)
278 TIGR01019 sucCoAalpha succinyl 64.6 11 0.00024 42.1 5.6 61 261-321 143-204 (286)
279 PLN02712 arogenate dehydrogena 64.4 16 0.00034 45.8 7.5 72 322-399 56-129 (667)
280 PF01247 Ribosomal_L35Ae: Ribo 64.1 14 0.00031 34.1 5.2 30 899-928 19-49 (95)
281 PRK06270 homoserine dehydrogen 63.4 14 0.0003 42.3 6.3 64 369-435 80-148 (341)
282 PLN02383 aspartate semialdehyd 63.4 19 0.00041 41.4 7.3 114 323-441 12-141 (344)
283 PLN00125 Succinyl-CoA ligase [ 63.4 16 0.00034 41.2 6.4 60 261-321 150-211 (300)
284 PLN02522 ATP citrate (pro-S)-l 62.6 13 0.00029 45.6 6.1 84 261-346 167-252 (608)
285 PF10281 Ish1: Putative stress 62.5 16 0.00035 27.7 4.5 32 4-37 5-36 (38)
286 TIGR00640 acid_CoA_mut_C methy 62.3 28 0.0006 34.3 7.3 105 316-439 3-114 (132)
287 PF07755 DUF1611: Protein of u 62.1 26 0.00057 39.3 7.9 124 362-496 18-152 (301)
288 PRK11863 N-acetyl-gamma-glutam 62.1 16 0.00034 41.4 6.3 80 322-414 6-85 (313)
289 cd02071 MM_CoA_mut_B12_BD meth 61.9 24 0.00051 34.0 6.7 95 328-440 12-112 (122)
290 KOG0887|consensus 61.8 12 0.00027 34.8 4.3 34 896-929 26-60 (111)
291 PRK08300 acetaldehyde dehydrog 61.5 10 0.00022 42.7 4.5 87 323-412 9-103 (302)
292 PF03447 NAD_binding_3: Homose 61.5 9 0.0002 36.4 3.7 71 362-435 43-115 (117)
293 TIGR03215 ac_ald_DH_ac acetald 61.0 12 0.00027 41.7 5.1 86 323-411 6-96 (285)
294 PTZ00041 60S ribosomal protein 60.9 9.6 0.00021 36.5 3.6 31 898-928 37-68 (120)
295 COG4300 CadD Predicted permeas 60.3 27 0.00059 35.9 6.8 167 591-766 12-199 (205)
296 PRK06349 homoserine dehydrogen 59.8 16 0.00036 43.1 6.2 70 363-435 57-127 (426)
297 PF03435 Saccharop_dh: Sacchar 59.4 9.2 0.0002 44.4 4.0 62 367-435 58-119 (386)
298 PRK14619 NAD(P)H-dependent gly 58.9 18 0.00038 40.8 6.0 61 323-400 9-69 (308)
299 TIGR01851 argC_other N-acetyl- 58.7 20 0.00042 40.5 6.2 206 323-549 6-246 (310)
300 TIGR03649 ergot_EASG ergot alk 58.6 20 0.00044 39.4 6.3 86 323-411 4-105 (285)
301 TIGR01296 asd_B aspartate-semi 58.3 10 0.00022 43.4 4.0 79 322-404 3-87 (339)
302 PF09822 ABC_transp_aux: ABC-t 57.8 54 0.0012 36.1 9.5 97 296-412 127-235 (271)
303 PF11379 DUF3182: Protein of u 57.7 22 0.00048 40.1 6.2 79 19-111 114-193 (355)
304 PF02153 PDH: Prephenate dehyd 57.6 26 0.00056 38.4 6.9 91 336-436 3-101 (258)
305 PLN02858 fructose-bisphosphate 56.4 25 0.00054 47.7 7.7 109 324-441 10-129 (1378)
306 PRK14874 aspartate-semialdehyd 56.0 26 0.00056 40.0 6.8 89 323-413 6-97 (334)
307 TIGR03026 NDP-sugDHase nucleot 56.0 23 0.00049 41.7 6.5 91 323-422 5-131 (411)
308 PRK14620 NAD(P)H-dependent gly 55.3 31 0.00067 39.0 7.3 51 364-415 58-111 (326)
309 PRK07574 formate dehydrogenase 55.3 90 0.0019 36.5 11.1 97 328-433 201-304 (385)
310 PRK05678 succinyl-CoA syntheta 55.2 21 0.00045 40.1 5.6 61 261-321 145-206 (291)
311 TIGR00706 SppA_dom signal pept 54.8 25 0.00054 37.2 6.0 51 503-553 18-72 (207)
312 PRK06464 phosphoenolpyruvate s 54.5 3.4E+02 0.0075 34.9 16.9 43 168-215 288-331 (795)
313 TIGR01915 npdG NADPH-dependent 54.0 20 0.00043 38.2 5.1 85 323-415 5-106 (219)
314 PRK06436 glycerate dehydrogena 53.8 31 0.00068 38.8 6.9 90 328-426 131-224 (303)
315 PRK15469 ghrA bifunctional gly 53.8 34 0.00075 38.7 7.2 99 324-433 142-246 (312)
316 TIGR01724 hmd_rel H2-forming N 52.2 62 0.0013 36.8 8.6 104 330-446 31-144 (341)
317 PRK08040 putative semialdehyde 51.9 28 0.0006 39.9 6.1 112 323-441 9-134 (336)
318 TIGR01418 PEP_synth phosphoeno 51.0 4.8E+02 0.01 33.6 17.4 43 168-215 286-329 (782)
319 COG2095 MarC Multiple antibiot 50.7 46 0.001 35.3 7.1 73 691-763 20-96 (203)
320 PLN02968 Probable N-acetyl-gam 49.9 33 0.00072 40.0 6.4 86 323-414 43-138 (381)
321 COG1971 Predicted membrane pro 49.6 1E+02 0.0022 32.3 9.1 81 680-762 3-89 (190)
322 PRK10995 inner membrane protei 48.8 62 0.0014 34.7 7.9 71 692-762 22-96 (221)
323 PF01210 NAD_Gly3P_dh_N: NAD-d 48.7 31 0.00067 34.7 5.3 49 363-413 56-106 (157)
324 PRK05225 ketol-acid reductoiso 48.5 21 0.00045 42.3 4.4 107 324-442 42-158 (487)
325 COG2899 Uncharacterized protei 48.4 53 0.0012 36.1 7.0 79 683-761 42-145 (346)
326 COG0565 LasT rRNA methylase [T 48.2 84 0.0018 34.2 8.6 65 314-385 3-79 (242)
327 COG4693 PchG Oxidoreductase (N 47.9 29 0.00063 38.2 5.1 68 361-435 48-120 (361)
328 TIGR00705 SppA_67K signal pept 47.5 31 0.00067 42.6 6.0 79 459-553 306-389 (584)
329 PRK08664 aspartate-semialdehyd 46.9 35 0.00075 39.3 6.0 36 378-414 76-111 (349)
330 PRK12439 NAD(P)H-dependent gly 46.8 31 0.00067 39.5 5.5 51 364-416 65-117 (341)
331 cd01065 NAD_bind_Shikimate_DH 46.8 20 0.00043 35.5 3.5 99 324-436 25-137 (155)
332 COG1810 Uncharacterized protei 46.5 75 0.0016 33.9 7.7 108 328-445 10-120 (224)
333 COG0287 TyrA Prephenate dehydr 46.4 55 0.0012 36.4 7.2 75 324-405 9-92 (279)
334 PF05770 Ins134_P3_kin: Inosit 46.2 16 0.00035 41.1 3.0 69 15-105 111-182 (307)
335 cd00226 PRCH Photosynthetic re 46.1 20 0.00043 38.8 3.5 24 942-965 146-169 (246)
336 PRK05671 aspartate-semialdehyd 46.1 35 0.00076 39.1 5.8 87 323-414 9-101 (336)
337 TIGR02049 gshA_ferroox glutama 45.6 63 0.0014 37.1 7.4 55 43-107 260-315 (403)
338 COG4280 Predicted membrane pro 45.3 1.5E+02 0.0033 31.2 9.4 165 592-762 13-200 (236)
339 PRK06241 phosphoenolpyruvate s 44.8 5.8E+02 0.012 33.3 17.0 44 168-217 268-311 (871)
340 PRK08605 D-lactate dehydrogena 44.5 44 0.00094 38.2 6.3 102 323-433 151-256 (332)
341 COG1748 LYS9 Saccharopine dehy 44.4 44 0.00096 38.9 6.2 65 367-439 59-123 (389)
342 TIGR00978 asd_EA aspartate-sem 43.8 50 0.0011 37.8 6.6 36 378-414 73-108 (341)
343 PLN03139 formate dehydrogenase 43.5 74 0.0016 37.2 8.0 100 324-433 205-311 (386)
344 PRK10949 protease 4; Provision 43.5 44 0.00096 41.5 6.4 78 459-552 324-406 (618)
345 PRK06444 prephenate dehydrogen 43.2 24 0.00051 37.3 3.5 50 321-399 3-52 (197)
346 TIGR01532 E4PD_g-proteo D-eryt 42.8 37 0.00081 38.7 5.3 46 368-414 78-124 (325)
347 TIGR01327 PGDH D-3-phosphoglyc 42.0 35 0.00077 41.5 5.3 98 328-433 147-249 (525)
348 TIGR00112 proC pyrroline-5-car 41.7 70 0.0015 34.7 7.1 70 348-419 11-86 (245)
349 COG2185 Sbm Methylmalonyl-CoA 41.2 1E+02 0.0023 30.8 7.4 97 321-439 17-124 (143)
350 CHL00194 ycf39 Ycf39; Provisio 41.0 33 0.00071 38.5 4.6 83 323-411 5-110 (317)
351 PRK12557 H(2)-dependent methyl 40.9 90 0.0019 35.9 8.0 78 331-414 32-119 (342)
352 TIGR02840 spore_YtaF putative 40.9 1.3E+02 0.0027 32.1 8.6 78 682-761 2-82 (206)
353 PRK12480 D-lactate dehydrogena 40.6 63 0.0014 36.9 6.7 100 323-433 151-254 (330)
354 COG3881 PRC-barrel domain cont 40.4 68 0.0015 32.3 5.9 73 886-965 35-108 (176)
355 PRK06728 aspartate-semialdehyd 40.4 82 0.0018 36.3 7.5 110 322-442 9-135 (347)
356 PLN02235 ATP citrate (pro-S)-l 40.3 73 0.0016 37.5 7.2 98 461-559 270-386 (423)
357 cd07020 Clp_protease_NfeD_1 No 40.0 63 0.0014 33.6 6.1 50 503-553 18-72 (187)
358 COG0800 Eda 2-keto-3-deoxy-6-p 39.8 86 0.0019 33.4 7.0 99 324-447 20-118 (211)
359 PRK11469 hypothetical protein; 39.6 1.9E+02 0.004 30.3 9.5 80 680-761 3-88 (188)
360 PRK09426 methylmalonyl-CoA mut 39.1 87 0.0019 39.6 8.1 106 315-439 582-694 (714)
361 PF02750 Synapsin_C: Synapsin, 39.1 67 0.0014 33.7 5.9 74 16-110 30-103 (203)
362 cd00419 Ferrochelatase_C Ferro 39.0 61 0.0013 31.9 5.5 49 390-440 78-134 (135)
363 COG0002 ArgC Acetylglutamate s 38.8 58 0.0013 37.2 5.9 37 378-415 70-106 (349)
364 PRK05568 flavodoxin; Provision 38.8 1.9E+02 0.0041 28.1 9.1 102 316-437 4-116 (142)
365 PRK00257 erythronate-4-phospha 38.7 98 0.0021 36.1 8.0 94 323-426 121-222 (381)
366 TIGR01501 MthylAspMutase methy 38.7 1.7E+02 0.0036 29.0 8.4 61 377-439 51-119 (134)
367 COG1023 Gnd Predicted 6-phosph 38.5 65 0.0014 35.0 5.8 107 328-439 9-120 (300)
368 PRK10263 DNA translocase FtsK; 38.2 4E+02 0.0086 36.0 13.8 22 616-637 60-81 (1355)
369 PTZ00345 glycerol-3-phosphate 37.7 59 0.0013 37.7 5.9 51 363-415 80-134 (365)
370 PF02826 2-Hacid_dh_C: D-isome 37.5 27 0.00059 35.9 2.9 99 324-433 42-147 (178)
371 PF12683 DUF3798: Protein of u 37.3 1E+02 0.0022 34.1 7.1 169 287-484 39-223 (275)
372 TIGR02853 spore_dpaA dipicolin 37.3 76 0.0016 35.5 6.6 107 324-446 157-271 (287)
373 KOG2927|consensus 37.0 43 0.00093 38.0 4.4 51 598-648 198-251 (372)
374 PRK06015 keto-hydroxyglutarate 36.9 88 0.0019 33.2 6.6 97 325-446 12-108 (201)
375 PF07085 DRTGG: DRTGG domain; 36.4 34 0.00073 31.9 3.1 70 360-436 20-90 (105)
376 PRK13149 H/ACA RNA-protein com 36.2 36 0.00077 30.0 3.0 21 946-966 27-47 (73)
377 PRK10949 protease 4; Provision 36.1 53 0.0011 40.8 5.5 86 458-548 53-151 (618)
378 PF14403 CP_ATPgrasp_2: Circul 35.7 1.6E+02 0.0034 35.2 9.0 79 9-110 303-391 (445)
379 TIGR03023 WcaJ_sugtrans Undeca 35.3 79 0.0017 37.6 6.8 72 330-405 139-221 (451)
380 TIGR03570 NeuD_NnaD sugar O-ac 34.7 90 0.002 31.9 6.4 82 324-409 5-90 (201)
381 PRK10739 putative antibiotic t 34.5 1.5E+02 0.0032 31.3 7.8 71 691-761 17-91 (197)
382 COG0111 SerA Phosphoglycerate 34.4 63 0.0014 36.8 5.4 97 328-433 151-253 (324)
383 TIGR00705 SppA_67K signal pept 34.2 61 0.0013 40.1 5.7 49 502-550 80-134 (584)
384 PRK15204 undecaprenyl-phosphat 34.1 84 0.0018 37.8 6.7 83 323-410 151-242 (476)
385 COG2232 Predicted ATP-dependen 34.0 1.1E+02 0.0023 34.8 6.8 24 94-118 176-199 (389)
386 TIGR00427 membrane protein, Ma 33.6 1.6E+02 0.0034 31.2 7.9 70 692-761 21-94 (201)
387 COG0616 SppA Periplasmic serin 33.1 82 0.0018 35.8 6.1 76 462-553 60-139 (317)
388 PRK13243 glyoxylate reductase; 32.9 1.9E+02 0.0042 33.0 9.1 91 328-426 159-255 (333)
389 TIGR01182 eda Entner-Doudoroff 32.6 1E+02 0.0022 32.8 6.2 107 313-447 7-113 (204)
390 PF05661 DUF808: Protein of un 32.5 7.3E+02 0.016 27.8 12.7 24 741-764 230-253 (295)
391 PRK02261 methylaspartate mutas 32.5 1.5E+02 0.0033 29.3 7.1 99 326-439 14-121 (137)
392 COG3277 GAR1 RNA-binding prote 32.0 1.1E+02 0.0024 28.5 5.6 21 946-966 28-48 (98)
393 PRK06522 2-dehydropantoate 2-r 31.5 93 0.002 34.4 6.2 47 367-416 58-106 (304)
394 TIGR03025 EPS_sugtrans exopoly 30.5 1E+02 0.0022 36.5 6.7 47 359-405 166-218 (445)
395 COG2119 Predicted membrane pro 30.2 1.9E+02 0.0041 30.2 7.4 56 710-765 32-90 (190)
396 PLN02591 tryptophan synthase 30.2 4.9E+02 0.011 28.5 11.2 42 390-435 94-135 (250)
397 KOG3432|consensus 29.7 71 0.0015 30.2 3.9 39 287-325 34-72 (121)
398 PRK13535 erythrose 4-phosphate 29.7 86 0.0019 35.9 5.5 45 369-414 81-126 (336)
399 cd07021 Clp_protease_NfeD_like 29.5 1.5E+02 0.0032 30.7 6.8 49 504-553 19-69 (178)
400 COG1086 Predicted nucleoside-d 29.4 4.4E+02 0.0095 32.4 11.3 192 329-550 126-332 (588)
401 PRK06552 keto-hydroxyglutarate 29.4 1.9E+02 0.0041 30.9 7.7 165 312-515 11-178 (213)
402 PRK15438 erythronate-4-phospha 29.3 2.5E+02 0.0055 32.7 9.3 94 323-426 121-222 (378)
403 TIGR00949 2A76 The Resistance 29.0 1.6E+02 0.0035 30.1 7.0 50 711-760 21-75 (185)
404 PLN02545 3-hydroxybutyryl-CoA 29.0 96 0.0021 34.5 5.7 85 323-417 9-126 (295)
405 TIGR03022 WbaP_sugtrans Undeca 28.9 98 0.0021 36.8 6.1 82 323-409 130-222 (456)
406 PLN02725 GDP-4-keto-6-deoxyman 28.9 1.2E+02 0.0027 33.2 6.6 81 323-411 2-101 (306)
407 PRK08535 translation initiatio 28.8 2.7E+02 0.0059 31.5 9.3 106 380-491 122-229 (310)
408 KOG0409|consensus 28.8 79 0.0017 35.5 4.7 174 328-512 44-243 (327)
409 TIGR01546 GAPDH-II_archae glyc 28.8 1.6E+02 0.0034 33.8 7.3 46 362-410 61-106 (333)
410 PRK05878 pyruvate phosphate di 28.7 4.2E+02 0.0091 32.4 11.3 125 67-216 160-296 (530)
411 TIGR02888 spore_YlmC_YmxH spor 28.6 35 0.00076 30.3 1.7 24 941-964 2-28 (76)
412 PRK14194 bifunctional 5,10-met 28.4 2.1E+02 0.0046 32.2 8.2 29 293-321 69-97 (301)
413 PF01914 MarC: MarC family int 28.0 2.2E+02 0.0047 30.2 7.8 74 691-764 17-94 (203)
414 PRK07535 methyltetrahydrofolat 27.5 7.5E+02 0.016 27.2 12.2 24 289-312 39-66 (261)
415 cd07013 S14_ClpP Caseinolytic 27.4 1.3E+02 0.0027 30.6 5.8 51 503-553 17-69 (162)
416 COG0075 Serine-pyruvate aminot 27.3 2.2E+02 0.0047 33.3 8.2 66 458-526 77-143 (383)
417 TIGR01278 DPOR_BchB light-inde 27.2 9.8E+02 0.021 29.1 14.3 147 385-547 67-238 (511)
418 PRK11111 hypothetical protein; 26.8 2.3E+02 0.0051 30.3 7.8 69 692-760 24-96 (214)
419 PRK13957 indole-3-glycerol-pho 26.7 1.2E+02 0.0025 33.3 5.6 88 392-481 114-221 (247)
420 cd02072 Glm_B12_BD B12 binding 26.6 1.7E+02 0.0037 28.7 6.2 61 377-439 49-117 (128)
421 PF13727 CoA_binding_3: CoA-bi 26.3 75 0.0016 31.6 4.0 47 359-405 119-171 (175)
422 cd06267 PBP1_LacI_sugar_bindin 26.2 5.3E+02 0.012 26.8 10.8 147 368-522 19-184 (264)
423 PRK10433 putative RNA methyltr 26.2 3.2E+02 0.0068 29.6 8.7 37 315-356 2-38 (228)
424 KOG4039|consensus 26.0 1.4E+02 0.0031 31.0 5.6 86 323-411 23-131 (238)
425 PRK06129 3-hydroxyacyl-CoA deh 25.9 80 0.0017 35.5 4.4 79 323-410 7-116 (308)
426 PF06695 Sm_multidrug_ex: Puta 25.8 1.2E+02 0.0026 29.4 4.9 34 711-744 20-53 (121)
427 COG0074 SucD Succinyl-CoA synt 25.6 1.5E+02 0.0031 33.1 6.0 65 256-320 140-205 (293)
428 PRK11064 wecC UDP-N-acetyl-D-m 25.2 1.4E+02 0.0031 35.2 6.5 49 378-426 75-134 (415)
429 cd06379 PBP1_iGluR_NMDA_NR1 N- 25.1 1E+03 0.022 27.0 13.6 72 459-539 153-232 (377)
430 PF08886 GshA: Glutamate-cyste 24.5 78 0.0017 36.5 3.8 52 43-103 263-315 (404)
431 PRK08410 2-hydroxyacid dehydro 24.5 3.3E+02 0.0071 30.8 9.0 95 328-433 154-252 (311)
432 PRK12483 threonine dehydratase 24.4 1.1E+02 0.0025 37.1 5.6 131 382-526 88-224 (521)
433 COG0436 Aspartate/tyrosine/aro 24.0 1.4E+02 0.0031 34.9 6.1 52 392-445 153-210 (393)
434 PF01169 UPF0016: Uncharacteri 23.7 3.8E+02 0.0082 23.8 7.3 53 696-750 19-74 (78)
435 PRK05718 keto-hydroxyglutarate 23.7 3E+02 0.0065 29.4 7.9 104 312-440 13-116 (212)
436 PF10609 ParA: ParA/MinD ATPas 23.6 2.2E+02 0.0048 25.7 5.8 55 380-436 2-58 (81)
437 PRK13581 D-3-phosphoglycerate 23.6 1.1E+02 0.0023 37.4 5.2 96 328-433 149-250 (526)
438 smart00481 POLIIIAc DNA polyme 23.6 1.7E+02 0.0036 24.7 5.0 43 390-435 16-58 (67)
439 PF04273 DUF442: Putative phos 23.5 1.1E+02 0.0023 29.2 4.1 94 385-481 10-107 (110)
440 PF14305 ATPgrasp_TupA: TupA-l 23.4 3.8E+02 0.0083 29.1 8.9 90 5-103 21-119 (239)
441 PRK15057 UDP-glucose 6-dehydro 23.1 2E+02 0.0043 33.7 7.1 60 370-433 67-137 (388)
442 TIGR00511 ribulose_e2b2 ribose 23.1 4E+02 0.0087 30.0 9.2 109 379-493 116-226 (301)
443 TIGR03521 GldG gliding-associa 22.8 3.4E+02 0.0074 33.3 9.3 96 300-409 168-269 (552)
444 PRK05808 3-hydroxybutyryl-CoA 22.4 1.7E+02 0.0036 32.4 6.0 47 367-416 74-124 (282)
445 PRK10014 DNA-binding transcrip 22.4 9.1E+02 0.02 26.8 12.2 62 369-435 85-148 (342)
446 PRK08374 homoserine dehydrogen 21.9 1.6E+02 0.0035 33.7 5.9 73 369-445 82-155 (336)
447 PRK12921 2-dehydropantoate 2-r 21.8 1.6E+02 0.0035 32.6 5.9 47 367-415 59-107 (305)
448 PF00289 CPSase_L_chain: Carba 21.7 1.4E+02 0.003 28.4 4.5 87 330-438 13-106 (110)
449 KOG3505|consensus 21.5 1.1E+02 0.0024 25.0 3.0 43 476-525 10-52 (55)
450 PF01810 LysE: LysE type trans 21.5 2.9E+02 0.0063 28.3 7.3 53 712-764 27-84 (191)
451 PF01113 DapB_N: Dihydrodipico 21.5 3.3E+02 0.0071 26.2 7.1 85 462-553 2-102 (124)
452 cd00617 Tnase_like Tryptophana 21.0 6.9E+02 0.015 29.7 11.1 45 392-439 138-194 (431)
453 cd01966 Nitrogenase_NifN_1 Nit 20.9 1.4E+03 0.03 26.9 14.5 151 383-548 61-252 (417)
454 KOG0135|consensus 20.8 1.6E+02 0.0035 35.5 5.6 98 753-859 121-230 (661)
455 PRK12435 ferrochelatase; Provi 20.7 1.7E+02 0.0036 33.2 5.6 50 390-441 233-290 (311)
456 cd01391 Periplasmic_Binding_Pr 20.7 9.1E+02 0.02 24.6 14.6 176 365-553 17-219 (269)
457 PRK15062 hydrogenase isoenzyme 20.6 1.3E+03 0.029 26.7 12.5 230 274-539 13-265 (364)
458 TIGR01101 V_ATP_synt_F vacuola 20.5 1.5E+02 0.0033 28.5 4.4 34 289-322 34-67 (115)
459 PRK11706 TDP-4-oxo-6-deoxy-D-g 20.5 5E+02 0.011 29.8 9.8 109 366-477 80-203 (375)
460 PF00290 Trp_syntA: Tryptophan 20.4 5.3E+02 0.011 28.5 9.2 40 391-434 104-143 (259)
461 PRK02910 light-independent pro 20.2 5.2E+02 0.011 31.5 10.1 146 388-547 70-238 (519)
462 PRK06756 flavodoxin; Provision 20.0 4E+02 0.0088 26.1 7.7 97 322-438 10-121 (148)
No 1
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4.8e-87 Score=726.52 Aligned_cols=337 Identities=45% Similarity=0.756 Sum_probs=322.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcc
Q psy3769 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQ 80 (974)
Q Consensus 1 m~L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~ 80 (974)
|+|||||+|++|++||||||++.++++++|+.++++++|..|+|||+|++.|||||+|||++++|++|+++++++|+++.
T Consensus 1 M~lhEYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~ 80 (387)
T COG0045 1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKN 80 (387)
T ss_pred CcHHHHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999987
Q ss_pred ccccccCCCCCceeEEEEEEEecc-ceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHH
Q psy3769 81 LITSQTNQEGENVFCVLIEEYIDI-KKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNN 159 (974)
Q Consensus 81 ~~t~q~~~~g~~~~~vLVee~v~~-~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~ 159 (974)
+|+++.|++++++||||++++ .+|||+++..||+.++|++|+|.+||||||++++++|++|++++++|..|+++++
T Consensus 81 ---~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~~g~~~~~ 157 (387)
T COG0045 81 ---YQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQ 157 (387)
T ss_pred ---cccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCccCCCHHH
Confidence 799999999999999999994 5599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccC-CcEEEEEEEEeeeCccccCCccccccccchhh
Q psy3769 160 IDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSK-NKIISLDIKFNFDTNALFRHPEIISYQYAHKK 238 (974)
Q Consensus 160 a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~-g~~~alDaki~ldd~a~~r~~~~~~~~~~~~~ 238 (974)
+|+++..+|+++...+++.+++.+||++|.++|++++|||||++|++ |+++|||||+.+||||.||||++..+++.+++
T Consensus 158 aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~~~~~~d~~~e 237 (387)
T COG0045 158 ARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPDLAELRDESEE 237 (387)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcchhhhhccccc
Confidence 99999999999999999999999999999999999999999999995 48999999999999999999999999999998
Q ss_pred hcccCChhhhhhccCCCeEeecCCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCHHHHHHHHHHHhhcCCeEE
Q psy3769 239 YINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTITEAFKIMMQQNNLKT 318 (974)
Q Consensus 239 ~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~~~v~~a~~~il~~~~~~~ 318 (974)
|++|.+|++++++||+||||||||+|||||+|+|||+|+.+||+||||||+||+||.++|+++|+++++||++|+
T Consensus 238 -----d~~e~~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~~e~v~~a~~~il~d~~vk~ 312 (387)
T COG0045 238 -----DPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGATAERVKEAFKLILSDPNVKA 312 (387)
T ss_pred -----ChhHHHhhhCCCceEEecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCCHHHHHHHHHHHhcCCCccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccc-ccCc--ccccchhhhhccCCCC
Q psy3769 319 ILVNIFG-ITGK--TGRFHTNLCLNYGNGK 345 (974)
Q Consensus 319 i~vni~G-~~~k--~G~~v~~~l~~~g~~g 345 (974)
||||||| +++| ...-+.+.+.+.+-+-
T Consensus 313 IfVNIfGGI~rcD~vA~GIi~Al~e~~~~v 342 (387)
T COG0045 313 IFVNIFGGITRCDEVAEGIIAALKEVGVNV 342 (387)
T ss_pred EEEEEccCcCccHHHHHHHHHHHHhcCCCC
Confidence 9999999 6665 4455666666766443
No 2
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=5.6e-78 Score=686.19 Aligned_cols=338 Identities=39% Similarity=0.639 Sum_probs=318.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcC--CCcEEEEeeeecCccccc-------CeEEEeCCHHHHHH
Q psy3769 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIG--GNSWVIKAQIHAGGRGKC-------GGIKLAQSLEQVEK 71 (974)
Q Consensus 1 m~L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig--~~PvVvK~qi~~ggrgk~-------GGV~l~~s~ee~~~ 71 (974)
|+|+|||||++|++||||||++.++++++||.+++++++ .+|||+|+|++.|||||+ |||+++++ +|+++
T Consensus 28 m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~ 106 (422)
T PLN00124 28 LNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEE 106 (422)
T ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHH
Confidence 899999999999999999999999999999999999994 489999999999999976 99999977 99999
Q ss_pred HHHHHHhccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCC
Q psy3769 72 YTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDP 151 (974)
Q Consensus 72 a~~~~l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p 151 (974)
++++|+++.++|+|++++|..+++|+|+|++++++|+|+|+++||+.++|++++|+.||++||++++..|+.+.+++++|
T Consensus 107 aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~pd~i~~~~id~ 186 (422)
T PLN00124 107 LAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIKVPIDI 186 (422)
T ss_pred HHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhCchheeEEecCc
Confidence 99999999999999999999999999999998999999999999988889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEeeeCccccCCccccc
Q psy3769 152 LIGLTKNNIDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIIS 231 (974)
Q Consensus 152 ~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ldd~a~~r~~~~~~ 231 (974)
..++++++++++++.++.++.+.+++.+++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||+++..
T Consensus 187 ~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~DdnA~~R~~~~~~ 266 (422)
T PLN00124 187 FKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNAAFRQKEIFA 266 (422)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCCchhhcChhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcccCChhhhhhccCCCeEeecCCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCHHHHHHHHHHHh
Q psy3769 232 YQYAHKKYINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTITEAFKIMM 311 (974)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~~~v~~a~~~il 311 (974)
+++++++ +|.|.+|+++|++||+|+||||||+|||||||+|||+|+++||+||||||+||+||.++|++++++++
T Consensus 267 ~~~~~~~-----~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a~~~~v~~a~~ii~ 341 (422)
T PLN00124 267 LRDTSQE-----DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVEAFKILT 341 (422)
T ss_pred ccCcccC-----ChhHHHHhhCCCceECCCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCCCHHHHHHHHHHHh
Confidence 9999888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEEcccc-ccCc--ccccchhhhhccCCC
Q psy3769 312 QQNNLKTILVNIFG-ITGK--TGRFHTNLCLNYGNG 344 (974)
Q Consensus 312 ~~~~~~~i~vni~G-~~~k--~G~~v~~~l~~~g~~ 344 (974)
+||++|+||||||| ++++ ...-+++.+.+.+.+
T Consensus 342 ~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~ 377 (422)
T PLN00124 342 SDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLK 377 (422)
T ss_pred cCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCC
Confidence 99999999999998 5554 333344444444444
No 3
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=1.9e-73 Score=638.37 Aligned_cols=323 Identities=20% Similarity=0.317 Sum_probs=294.1
Q ss_pred CCCHHHHHHHHHHc-----CCCCCCceee-CCHHHHHHHHHH---cCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHH
Q psy3769 2 NIYEYQGKEILRKF-----NVTIPKGILC-MNVDEAIKAAKK---IGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKY 72 (974)
Q Consensus 2 ~L~E~~ak~lL~~~-----GIpvp~~~~~-~s~eea~~~a~~---ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a 72 (974)
+|||||||++|++| |||+|++.++ ++++|+.+++++ ++..++|||+|++.|||||+|||++++|++|++++
T Consensus 5 ~l~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~ 84 (423)
T PLN02235 5 KIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATF 84 (423)
T ss_pred cccHHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHH
Confidence 69999999999999 9999999999 999999999988 87456799999999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCC
Q psy3769 73 TKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPL 152 (974)
Q Consensus 73 ~~~~l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~ 152 (974)
+++|+++.++|+ +++| ++++|||||++++.+|+|++++.||+.+. +++|.+|||+||+ +|+++.+++++|.
T Consensus 85 a~~~Lg~~l~t~--g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~--ii~S~~GGvdIEe----~pe~i~k~~Id~~ 155 (423)
T PLN02235 85 VKERLGKEVEMG--GCKG-PITTFIVEPFVPHDQEFYLSIVSDRLGCS--ISFSECGGIEIEE----NWDKVKTIFLPTE 155 (423)
T ss_pred HHHHhCCceEec--CCCc-cEeEEEEEecCCCcceEEEEEEEecCCCE--EEEECCCCCcccC----ChhHeEEEEcCCC
Confidence 999999998765 8888 99999999999999999999999998865 7999999999997 6999999999999
Q ss_pred CCCCHHHHHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEeeeCccccCCcc-ccc
Q psy3769 153 IGLTKNNIDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPE-IIS 231 (974)
Q Consensus 153 ~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ldd~a~~r~~~-~~~ 231 (974)
.|++++++++++..++. ...+++.+++.+||++|.++|++++|||||++ .||+++|+|||+.+||||.|||++ |..
T Consensus 156 ~gl~~~~~~~~~~~l~~--~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~-~dg~~~alDaK~~~DDnA~fR~~~~~~~ 232 (423)
T PLN02235 156 APLTSEICAPLIATLPL--EIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTL-VDGEPYPLDMRGELDDTAAFKNFKKWGN 232 (423)
T ss_pred CCCCHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHcCCeEEEecceEe-eCCCEEEEEeEEcccCCCcccCHhHhhh
Confidence 99999999999998876 67899999999999999999999999999999 899999999999999999999998 875
Q ss_pred cccc----hhhhcccCChhhh------hhccCCCeE--eecCCeEEEEecCcchhhHHHHHHHhcC--CCCceeeecCCC
Q psy3769 232 YQYA----HKKYINKIDLMEI------EASKFDLTY--IPLNGNIGCLVNGAGLAMATMDTIKLFG--GEPANFLDIGGG 297 (974)
Q Consensus 232 ~~~~----~~~~~~~~~~~e~------~a~~~~l~y--v~l~G~Ig~~~nGaGlam~t~D~i~~~g--g~panfld~GG~ 297 (974)
+.-| ++. +|+|. +|++++|+| |+||||||||+|||||||+|||+|+++| |+||||||+||+
T Consensus 233 ~~f~~~fgr~~-----~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~ 307 (423)
T PLN02235 233 IEFPLPFGRVM-----SPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA 307 (423)
T ss_pred hcccccccCCC-----CHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCC
Confidence 5211 222 67777 778899999 9999999999999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHh----hcCCeEEEEEcccc-ccCc--cc---ccchhhhhcc
Q psy3769 298 ATIKTITEAFKIMM----QQNNLKTILVNIFG-ITGK--TG---RFHTNLCLNY 341 (974)
Q Consensus 298 a~~~~v~~a~~~il----~~~~~~~i~vni~G-~~~k--~G---~~v~~~l~~~ 341 (974)
||.++|++++++++ ++|++|+||||||| ++++ .. .-+++.+.+.
T Consensus 308 a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~ 361 (423)
T PLN02235 308 PNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREK 361 (423)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHh
Confidence 99999999999999 79999999999998 5543 33 3344444443
No 4
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=1.1e-72 Score=643.72 Aligned_cols=320 Identities=42% Similarity=0.779 Sum_probs=312.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcc
Q psy3769 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQ 80 (974)
Q Consensus 1 m~L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~ 80 (974)
|+|+|||+|++|++||||||++.+++|++|+.++++++|+.|||+|+|++.|||||+|||++..|++|+++++++|+++.
T Consensus 1 m~l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~ 80 (392)
T PRK14046 1 MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKK 80 (392)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999933679999999999999999999999999999999999999
Q ss_pred ccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHH
Q psy3769 81 LITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNI 160 (974)
Q Consensus 81 ~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a 160 (974)
++|+|+++.|.++++|+||+|+++++|+|+|+++||.++++++++|+.||++||++++++|+++++++++|..|++++++
T Consensus 81 ~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~~~~~~~~~~~ 160 (392)
T PRK14046 81 LVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAVGLQQFQA 160 (392)
T ss_pred hhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEEeCCCCCchHHHhhhChhheEEEEcCCCCCCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEeeeCccccCCccccccccchhhhc
Q psy3769 161 DNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQYAHKKYI 240 (974)
Q Consensus 161 ~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ldd~a~~r~~~~~~~~~~~~~~~ 240 (974)
++++..+|++++..+++.+++.+||++|.++|++++|||||++|.+|+++|+|+|+.+||||.|||+++..+++++++
T Consensus 161 ~~~~~~lg~~~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~~~~~~~~~~~-- 238 (392)
T PRK14046 161 REIAFGLGLDIKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIAEMRDPSQE-- 238 (392)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChhHHhhcCcccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCChhhhhhccCCCeEeecCCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCHHHHHHHHHHHhhcCCeEEEE
Q psy3769 241 NKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTITEAFKIMMQQNNLKTIL 320 (974)
Q Consensus 241 ~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~~~v~~a~~~il~~~~~~~i~ 320 (974)
+|+|.+|+++|||||+|+||||||+|||||+|+|||+|+.+||+|+||+|+||+++++.+.++++++++||++++||
T Consensus 239 ---~~~e~~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a~~e~~~~aL~~ll~Dp~VdaVl 315 (392)
T PRK14046 239 ---DPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGASPERVAKAFRLVLSDRNVKAIL 315 (392)
T ss_pred ---ChhHHHHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCCCHHHHHHHHHHHHcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecccc
Q psy3769 321 VNIFG 325 (974)
Q Consensus 321 vni~G 325 (974)
+|++|
T Consensus 316 v~i~g 320 (392)
T PRK14046 316 VNIFA 320 (392)
T ss_pred EEcCC
Confidence 99986
No 5
>KOG1447|consensus
Probab=100.00 E-value=4e-72 Score=572.06 Aligned_cols=339 Identities=40% Similarity=0.656 Sum_probs=322.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCccccc-------CeEEEeCCHHHHHHHH
Q psy3769 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKC-------GGIKLAQSLEQVEKYT 73 (974)
Q Consensus 1 m~L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~-------GGV~l~~s~ee~~~a~ 73 (974)
+||.|||+|++|.+||+.+-++.++.+..|+.+.++.++....|+|+|+++|||||. |||++-++++++.+.+
T Consensus 20 LNLqEfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~ 99 (412)
T KOG1447|consen 20 LNLQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLA 99 (412)
T ss_pred ccHHHhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHH
Confidence 478999999999999999999999999999999999998788999999999999998 8999999999999999
Q ss_pred HHHHhccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCC
Q psy3769 74 KKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLI 153 (974)
Q Consensus 74 ~~~l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~ 153 (974)
++|++..++|+||...|.++++|+|.|.+++.+|-|+++..||+..+||++.|+.||||||.++..+||.|++.+++...
T Consensus 100 ~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~Ifk~piDI~~ 179 (412)
T KOG1447|consen 100 KQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELIFKEPIDIFE 179 (412)
T ss_pred HHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhhccccchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEeeeCccccCCccccccc
Q psy3769 154 GLTKNNIDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQ 233 (974)
Q Consensus 154 gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ldd~a~~r~~~~~~~~ 233 (974)
|+.+.++.+|++.+++.+....+.++-+.+||.+|...|++.+|||||..|++|+++|+|||+.+||||.|||++++.+.
T Consensus 180 gi~esq~l~~Ak~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NFDDnA~fRQKdIFamd 259 (412)
T KOG1447|consen 180 GIKESQALRMAKNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEFRQKDIFAMD 259 (412)
T ss_pred CCchHHHHHHHHhccccCcHHHHHHHHHHHHHHHHhhhcceEEEecccccCCCceEEEEeeeccCCchHhhhhcceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccCChhhhhhccCCCeEeecCCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCHHHHHHHHHHHhhc
Q psy3769 234 YAHKKYINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTITEAFKIMMQQ 313 (974)
Q Consensus 234 ~~~~~~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~~~v~~a~~~il~~ 313 (974)
+.++. ||+|.+|.+++|+||-+||||+|+||||||||+|||+|+.+||+||||||+||+.+.++|++|++++.+|
T Consensus 260 ~~eE~-----dPrEveAakynLnYigmDGNIaClVNGAGLAMATmDiIkLnGGePANFLDvGGgV~EdqV~~Af~ilTaD 334 (412)
T KOG1447|consen 260 DKEEN-----DPREVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVGGGVKEDQVYQAFKILTAD 334 (412)
T ss_pred ccccc-----CchhhhhhhcCcceeeccCceEEEEccchhhhheeeeEEecCCCCcceeeccCcccHHHHHHHhhhhccC
Confidence 88888 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcccc-ccCc--ccccchhhhhccCCC
Q psy3769 314 NNLKTILVNIFG-ITGK--TGRFHTNLCLNYGNG 344 (974)
Q Consensus 314 ~~~~~i~vni~G-~~~k--~G~~v~~~l~~~g~~ 344 (974)
|++|+|+||||| +-+| ..+-+.+.+.+-+.+
T Consensus 335 PkVk~iLvNiFGGIVNCAtIANGiv~A~~kl~Ln 368 (412)
T KOG1447|consen 335 PKVKAILVNIFGGIVNCATIANGIVKACRKLELN 368 (412)
T ss_pred CceeEEEEehhcceehhHhHhhHHHHHHHhhcCC
Confidence 999999999999 3333 334444444444444
No 6
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=8.6e-67 Score=599.41 Aligned_cols=320 Identities=45% Similarity=0.787 Sum_probs=310.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcc
Q psy3769 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQ 80 (974)
Q Consensus 1 m~L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~ 80 (974)
|+|+|||+|++|++||||||++.++++++|+.++++++|.+|+|+|+|++.||||++|||++++|++|+++++++++++.
T Consensus 1 m~L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~ 80 (386)
T TIGR01016 1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKE 80 (386)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999857999999999999999999999999999999999999988
Q ss_pred ccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHH
Q psy3769 81 LITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNI 160 (974)
Q Consensus 81 ~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a 160 (974)
..|+|++++|..+++|+||||+++++|+|+|++.||..++|++++|..||++||+++|++|++|+++.++|..+++++++
T Consensus 81 ~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a 160 (386)
T TIGR01016 81 LVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQA 160 (386)
T ss_pred eeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHH
Confidence 88888887889999999999999999999999999986789999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEeeeCccccCCccccccccchhhhc
Q psy3769 161 DNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQYAHKKYI 240 (974)
Q Consensus 161 ~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ldd~a~~r~~~~~~~~~~~~~~~ 240 (974)
+++..++++++.+.+++.+++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||+++..+++++++
T Consensus 161 ~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~~~~~~~~~~~-- 238 (386)
T TIGR01016 161 REIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDLEEMRDYSQE-- 238 (386)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHHHHHhhcCCcC--
Confidence 999999999999999999999999999999999999999999999988999999999999999999999999988888
Q ss_pred ccCChhhhhhccCCCeEeecCCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCHHHHHHHHHHHhhcCCeEEEE
Q psy3769 241 NKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTITEAFKIMMQQNNLKTIL 320 (974)
Q Consensus 241 ~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~~~v~~a~~~il~~~~~~~i~ 320 (974)
++.|.+|+++||+||+|+||||||+||||++|+|||+++.+|++|+||+|+||+++++.++++++++++||++++||
T Consensus 239 ---~~~e~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a~~~~~~~al~~l~~dp~vd~il 315 (386)
T TIGR01016 239 ---DPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGASAERVREALKLVLSDKSVKVVF 315 (386)
T ss_pred ---ChhhhHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCCCHHHHHHHHHHHHcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecccc
Q psy3769 321 VNIFG 325 (974)
Q Consensus 321 vni~G 325 (974)
+|++|
T Consensus 316 v~i~g 320 (386)
T TIGR01016 316 INIFG 320 (386)
T ss_pred EECCC
Confidence 99996
No 7
>KOG2799|consensus
Probab=100.00 E-value=2.7e-69 Score=572.13 Aligned_cols=320 Identities=40% Similarity=0.687 Sum_probs=314.1
Q ss_pred CCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCccccc-------CeEEEeCCHHHHHHHH
Q psy3769 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKC-------GGIKLAQSLEQVEKYT 73 (974)
Q Consensus 1 m~L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~-------GGV~l~~s~ee~~~a~ 73 (974)
+.+|||.+.+||++||+.+|++++++|+|||.++++++|...+|+|+|+++|||||+ |||+++.+|+|+++.+
T Consensus 23 L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va 102 (434)
T KOG2799|consen 23 LGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVA 102 (434)
T ss_pred hhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHH
Confidence 358999999999999999999999999999999999999889999999999999998 8999999999999999
Q ss_pred HHHHhccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCC
Q psy3769 74 KKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLI 153 (974)
Q Consensus 74 ~~~l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~ 153 (974)
.+|+++.++|+|||+.|..++.|+|.+.....+|+|++++.||.+.+|++++|.+||++||.++...|+++.+.|++...
T Consensus 103 ~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai~k~pi~~~~ 182 (434)
T KOG2799|consen 103 SQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAIIKKPIDNNT 182 (434)
T ss_pred HHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccchhcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCC-cEEEEEEEEeeeCccccCCcccccc
Q psy3769 154 GLTKNNIDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKN-KIISLDIKFNFDTNALFRHPEIISY 232 (974)
Q Consensus 154 gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g-~~~alDaki~ldd~a~~r~~~~~~~ 232 (974)
|+++..+..+...||+++...+++.+.+.+||++|...|++.+|||||+.+.++ .++|.|||+.+||||.|||++++.+
T Consensus 183 Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~na~fRq~~iF~~ 262 (434)
T KOG2799|consen 183 GLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAAFRQKKIFLL 262 (434)
T ss_pred CCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhcccccHHHHhhhhhhc
Confidence 999999999999999999999999999999999999999999999999998866 7999999999999999999999999
Q ss_pred ccchhhhcccCChhhhhhccCCCeEeecCCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCHHHHHHHHHHHhh
Q psy3769 233 QYAHKKYINKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTITEAFKIMMQ 312 (974)
Q Consensus 233 ~~~~~~~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~~~v~~a~~~il~ 312 (974)
+++.|| ||+|..|.++++||+.|||||||++|||||+|||||+|+.|||.||||||+||+||.|+++++|+++.+
T Consensus 263 rd~~QE-----d~re~~aak~~ln~igldG~igC~vngaglamaTmdiiklhgg~panfldVGg~Atve~v~eaf~lits 337 (434)
T KOG2799|consen 263 RDLSQE-----DPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVEQVREAFSLITS 337 (434)
T ss_pred cchhhc-----CchhhhHHHhccceeccCCccceeeccchhhhhheeeeeecCCCCcceeeeCCCCcHHHHHHHHHHHhc
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEcccc
Q psy3769 313 QNNLKTILVNIFG 325 (974)
Q Consensus 313 ~~~~~~i~vni~G 325 (974)
||++.+|||||||
T Consensus 338 d~kv~ailvnifG 350 (434)
T KOG2799|consen 338 DKKVMAILVNIFG 350 (434)
T ss_pred ChhHHHHHHHHhc
Confidence 9999999999999
No 8
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=9.6e-61 Score=549.73 Aligned_cols=319 Identities=51% Similarity=0.892 Sum_probs=306.0
Q ss_pred CCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHc-CCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhc
Q psy3769 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKI-GGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGM 79 (974)
Q Consensus 1 m~L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~i-g~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~ 79 (974)
|+|+||++|++|++||||+|++.++++++|+.++++++ | ||+|+|+|++.|||||+|||++++|++|+++++++|+++
T Consensus 1 m~l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g-~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~ 79 (388)
T PRK00696 1 MNLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGG-GVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGM 79 (388)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCC-CcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999 7 999999999889999999999999999999999999988
Q ss_pred cccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHH
Q psy3769 80 QLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNN 159 (974)
Q Consensus 80 ~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~ 159 (974)
...++++++.|..+++|+||||+++++|+|+|+++|++|+++++++|..||+++|.++|.+|+.+.++.++|..+++.++
T Consensus 80 ~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~p~~~~~~~~ 159 (388)
T PRK00696 80 TLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLTGLQPFQ 159 (388)
T ss_pred ceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEEeCCCCcchhhhcccCcceeEEEEcCCCCCCCHHH
Confidence 77777888888999999999999999999999999999998877898899999999999999999999999988899999
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEeeeCccccCCccccccccchhhh
Q psy3769 160 IDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQYAHKKY 239 (974)
Q Consensus 160 a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ldd~a~~r~~~~~~~~~~~~~~ 239 (974)
+++++..++.++.+.+++.+++.+||+++.++++.++|||||+++++|+++|+|||+.+||||.|||+++..+++..+.
T Consensus 160 a~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~~~~~~~~~~~- 238 (388)
T PRK00696 160 AREIAFKLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPDLAELRDLSEE- 238 (388)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHhHHhhcCCCcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887777665
Q ss_pred cccCChhhhhhccCCCeEeecCCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCHHHHHHHHHHHhhcCCeEEE
Q psy3769 240 INKIDLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTITEAFKIMMQQNNLKTI 319 (974)
Q Consensus 240 ~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~~~v~~a~~~il~~~~~~~i 319 (974)
++.|.+++.++|+||+|+||||+|+||||++|+|+|++..+|++|+||+|+||.++++.++++++.+++||++++|
T Consensus 239 ----~~~e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~~~e~~~~aL~~l~~d~~vd~v 314 (388)
T PRK00696 239 ----DPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGATAERVAEAFKIILSDPNVKAI 314 (388)
T ss_pred ----ChhhhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCCCHHHHHHHHHHHhcCCCCCEE
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccc
Q psy3769 320 LVNIFG 325 (974)
Q Consensus 320 ~vni~G 325 (974)
|+|++|
T Consensus 315 lv~~~~ 320 (388)
T PRK00696 315 LVNIFG 320 (388)
T ss_pred EEEeCC
Confidence 999875
No 9
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=100.00 E-value=7.3e-60 Score=514.77 Aligned_cols=270 Identities=56% Similarity=0.953 Sum_probs=245.1
Q ss_pred cCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCC--CcEEEEEecchh
Q psy3769 313 QNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETG--ATVSVIYVPAIF 390 (974)
Q Consensus 313 ~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~--vDlavi~vp~~~ 390 (974)
+.+.+++ ++|+|++.|.+++++|+++||+ .+|||||+.+++++.|+|||+|++|+|+ + ||+|+|++|++.
T Consensus 6 ~~~~~~~---v~~~~~~~g~~~l~~l~~~g~~---~v~pVnp~~~~~~v~G~~~y~sv~dlp~--~~~~DlAvi~vp~~~ 77 (291)
T PRK05678 6 NKDTKVI---VQGITGKQGTFHTEQMLAYGTN---IVGGVTPGKGGTTVLGLPVFNTVAEAVE--ATGANASVIYVPPPF 77 (291)
T ss_pred cCCCeEE---EeCCCchHHHHHHHHHHHCCCC---EEEEECCCCCCCeEeCeeccCCHHHHhh--ccCCCEEEEEcCHHH
Confidence 5677777 4788889999999999999998 6999999932389999999999999998 6 999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccCccccccCCCCCCCCCCEEEEeCCh
Q psy3769 391 ATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSG 470 (974)
Q Consensus 391 v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~~~G~va~vSQSG 470 (974)
++++++||+++|+|.++|+|+||+++++++|++.|| ++|+|++||||+|++||..++++++++..+++|+||+|||||
T Consensus 78 v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~--~~girvlGPNc~Gi~~~~~~~~~~~~~~~~~~G~valiSQSG 155 (291)
T PRK05678 78 AADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLE--RKKTRLIGPNCPGIITPGECKIGIMPGHIHKKGRVGVVSRSG 155 (291)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH--HcCCEEECCCCCcccccccceeeecCCCCCCCCCEEEEeccH
Confidence 999999999999999999999999877789999999 999999999999999999887777765557799999999999
Q ss_pred hhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHhcCCCCEEEEec
Q psy3769 471 TLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIA 550 (974)
Q Consensus 471 ~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~~~~KPVv~lk~ 550 (974)
+++.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|+++++++++++|+++.++||||++|+
T Consensus 156 al~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~~~~~~KPVV~lk~ 235 (291)
T PRK05678 156 TLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKANVTKPVVGYIA 235 (291)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHHHHcCCCCEEEEEe
Confidence 99999999999999999999999999645799999999999999999999999999888778889988666899999999
Q ss_pred ccCCCCCCCccCccccc----ccchhceeeccccccceeeeeehhhhc
Q psy3769 551 GITAPPGKRMGHAGALI----TEIKKMTFLTASNGISIIQIILIDILL 594 (974)
Q Consensus 551 Grs~~~g~~~sHTgala----g~~~~~~a~~~q~gi~~~~li~le~~L 594 (974)
|||++.|+++||||||+ |++++++++++|+|+.++. .+++++
T Consensus 236 Grs~~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v~--~~~el~ 281 (291)
T PRK05678 236 GVTAPPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVAR--TPSEIG 281 (291)
T ss_pred cCCCCCCCcccchhhhccCCCCCHHHHHHHHHHCCCeECC--CHHHHH
Confidence 99955888899999999 9999999999999987654 444443
No 10
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=100.00 E-value=2.3e-59 Score=509.67 Aligned_cols=271 Identities=56% Similarity=0.963 Sum_probs=246.6
Q ss_pred cCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHH
Q psy3769 313 QNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFAT 392 (974)
Q Consensus 313 ~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~ 392 (974)
+.+.+++ ++|+|++.|..++++++++||+ +|++|||+.+++++.|+|||+|++|+|+...||+|++++|++.++
T Consensus 4 ~~~~~~~---~~g~~~~~~~~~~~~~~~~g~~---~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~ 77 (286)
T TIGR01019 4 DKDTKVI---VQGITGSQGSFHTEQMLAYGTN---IVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAA 77 (286)
T ss_pred cCCCcEE---EecCCcHHHHHHHHHHHhCCCC---EEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHH
Confidence 4566666 5788899999999999999999 699999995559999999999999999821289999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccCccccccCCCCCCCCCCEEEEeCChhh
Q psy3769 393 SAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSGTL 472 (974)
Q Consensus 393 ~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~~~G~va~vSQSG~~ 472 (974)
++++||+++|+|.++++++||+|.++++|+++|| ++|+|++||||+|++||..++++++++..++||+||+|||||++
T Consensus 78 ~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~--~~girilGPNc~Giin~~~~~~~~~~~~~~~~G~ValiSQSG~l 155 (286)
T TIGR01019 78 DAIFEAIDAGIELIVCITEGIPVHDMLKVKRYME--ESGTRLIGPNCPGIITPGECKIGIMPGHIHKPGNVGIVSRSGTL 155 (286)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH--HcCCEEECCCCceEEcccccceeeccccCCCCCcEEEEeccHHH
Confidence 9999999999999999999999998889999999 99999999999999999998888877666779999999999999
Q ss_pred HHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHhcCCCCEEEEeccc
Q psy3769 473 TYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGI 552 (974)
Q Consensus 473 ~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~~~~KPVv~lk~Gr 552 (974)
+.++++|++++|+|||++||+||+++.|+++.|+|+||.+||+||+|++|+|+++++++++++|+++.++||||++|+||
T Consensus 156 ~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~~~~~~KPVV~lk~Gr 235 (286)
T TIGR01019 156 TYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQNMSKPVVGFIAGA 235 (286)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHHHhcCCCCEEEEEecC
Confidence 99999999999999999999999975579999999999999999999999999988888888998766899999999999
Q ss_pred CCCCCCCccCccccc----ccchhceeeccccccceeeeeehhhh
Q psy3769 553 TAPPGKRMGHAGALI----TEIKKMTFLTASNGISIIQIILIDIL 593 (974)
Q Consensus 553 s~~~g~~~sHTgala----g~~~~~~a~~~q~gi~~~~li~le~~ 593 (974)
|++.|+++||||||+ |++++++++++|+|+.++. .++++
T Consensus 236 s~~~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v~--~~~el 278 (286)
T TIGR01019 236 TAPPGKRMGHAGAIISGGKGTAESKIEALEAAGVTVVK--SPSDI 278 (286)
T ss_pred CCCccccccchhhhhcCCCCCHHHHHHHHHHCCCeEeC--CHHHH
Confidence 954788899999999 9999999999999987654 44444
No 11
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=100.00 E-value=1.5e-57 Score=496.65 Aligned_cols=274 Identities=53% Similarity=0.895 Sum_probs=246.5
Q ss_pred HhhcCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecch
Q psy3769 310 MMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAI 389 (974)
Q Consensus 310 il~~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~ 389 (974)
++-+++.+++ ++|+|++.|..+.+.+++||.+ .+.+|||++++++++|+|||+|++|+|+...||+|+|++|++
T Consensus 7 ~~~~~~~~v~---~~gi~~~~~~~~~~~~~~ygt~---~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~ 80 (300)
T PLN00125 7 VFVDKNTRVI---CQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPP 80 (300)
T ss_pred EEecCCCeEE---EecCCCHHHHHHHHHHHHhCCc---EEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHH
Confidence 3456677776 5889999999999999999988 799999998779999999999999999732389999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCChHHH-HHHHHHHhcCCCCceEEccCCccccccCccccccCCCCCCCCCCEEEEeC
Q psy3769 390 FATSAIWEAIESELELVICITEGIPVRDM-LILKNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSR 468 (974)
Q Consensus 390 ~v~~~v~e~~~~gv~~~vi~s~G~~e~~~-~~l~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~~~G~va~vSQ 468 (974)
.++++++||+++|+|.++|+|+||+|.+. +++.++|| ++|+|++||||+|++||..++++++++..+++|+||+|||
T Consensus 81 ~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar--~~girviGPNc~Gii~~~~~~~~~~~~~~~~~G~ValiSQ 158 (300)
T PLN00125 81 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNR--QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSR 158 (300)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHh--hcCCEEECCCCceeecccccceeecCCCCCCCCcEEEEeC
Confidence 99999999999999999999999999874 45566689 9999999999999999998877777666677999999999
Q ss_pred ChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh-cCCCCEEE
Q psy3769 469 SGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK-NMKKPVIG 547 (974)
Q Consensus 469 SG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~-~~~KPVv~ 547 (974)
||+++.++++|+.++|+|||++||+||++++|+++.|+|+||.+||+||+|++|+|++|..++|+++|+++ +++||||+
T Consensus 159 SG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~~KPVV~ 238 (300)
T PLN00125 159 SGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVA 238 (300)
T ss_pred CccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcCCCCEEE
Confidence 99999999999999999999999999995559999999999999999999999999977777899999998 67999999
Q ss_pred EecccCCCCCCCccCccccc----ccchhceeeccccccceeeeeehhhh
Q psy3769 548 FIAGITAPPGKRMGHAGALI----TEIKKMTFLTASNGISIIQIILIDIL 593 (974)
Q Consensus 548 lk~Grs~~~g~~~sHTgala----g~~~~~~a~~~q~gi~~~~li~le~~ 593 (974)
+|+|||++.|+++||||||+ |++++++++++|+|+.++. .++++
T Consensus 239 lk~Grs~~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v~--~~~el 286 (300)
T PLN00125 239 FIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVE--SPAKI 286 (300)
T ss_pred EEecCCCCCCCCccchhhhhcCCCCCHHHHHHHHHHCCCeEeC--CHHHH
Confidence 99999954788899999997 8999999999999977654 44444
No 12
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=100.00 E-value=3.9e-56 Score=518.29 Aligned_cols=289 Identities=23% Similarity=0.281 Sum_probs=257.2
Q ss_pred cCCeEEEEEcccc---ccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecch
Q psy3769 313 QNNLKTILVNIFG---ITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAI 389 (974)
Q Consensus 313 ~~~~~~i~vni~G---~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~ 389 (974)
+|+..+| +| .++++|++++++|+++||+| .||||||++ +++.|+|||+|++|+|+ ++|++++++|++
T Consensus 6 ~p~siav----vGaS~~~~~~g~~~~~~l~~~gf~g--~v~~Vnp~~--~~i~G~~~~~sl~~lp~--~~Dlavi~vp~~ 75 (447)
T TIGR02717 6 NPKSVAV----IGASRDPGKVGYAIMKNLIEGGYKG--KIYPVNPKA--GEILGVKAYPSVLEIPD--PVDLAVIVVPAK 75 (447)
T ss_pred CCCEEEE----EccCCCCCchHHHHHHHHHhCCCCC--cEEEECCCC--CccCCccccCCHHHCCC--CCCEEEEecCHH
Confidence 4665555 57 45679999999999999998 799999998 89999999999999988 899999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCChHH------HHHHHHHHhcCCCCceEEccCCccccccCccccccCCCCCCCCCCE
Q psy3769 390 FATSAIWEAIESELELVICITEGIPVRD------MLILKNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIHKKGRI 463 (974)
Q Consensus 390 ~v~~~v~e~~~~gv~~~vi~s~G~~e~~------~~~l~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~~~G~v 463 (974)
.++++++||+++|+|.++|+++||+|.+ +++++++|| ++|+|++||||+|++||..+++.++.+..+++|+|
T Consensus 76 ~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~--~~girvlGPnc~G~~~~~~~l~~~~~~~~~~~G~v 153 (447)
T TIGR02717 76 YVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIAR--KYGMRLLGPNCLGIINTHIKLNATFAPTMPKKGGI 153 (447)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHH--HcCCEEEecCeeeEecCCCCeeeecCCCCCCCCCE
Confidence 9999999999999999999999999754 468999999 99999999999999999999888876666779999
Q ss_pred EEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh----
Q psy3769 464 GVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK---- 539 (974)
Q Consensus 464 a~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~---- 539 (974)
|+|||||+++.++++|+.++|+|||++||+||++ |+++.|+++||.+||+|++|++|+|++ +|+++|+++
T Consensus 154 alvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--d~~~~d~l~~l~~D~~t~~I~ly~E~~----~~~~~f~~aa~~a 227 (447)
T TIGR02717 154 AFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDTKVILLYLEGI----KDGRKFLKTAREI 227 (447)
T ss_pred EEEechHHHHHHHHHHHHhcCCCcceEEECCchh--hCCHHHHHHHHhhCCCCCEEEEEecCC----CCHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 999999999999999999999999999 779999987
Q ss_pred cCCCCEEEEecccCCCCCCC--ccCcccccccchhceeeccccccceeeeeehhhhcChhHHHHHHHHcc-cCCccccce
Q psy3769 540 NMKKPVIGFIAGITAPPGKR--MGHAGALITEIKKMTFLTASNGISIIQIILIDILLGSTDAIIIALACR-NLQPNIRTK 616 (974)
Q Consensus 540 ~~~KPVv~lk~Grs~~~g~~--~sHTgalag~~~~~~a~~~q~gi~~~~li~le~~Ls~Dn~~vial~~~-~lp~~~r~~ 616 (974)
+++||||++|+||| +.|++ +|||||++|++++++++++|+|+.++. .+++++ ..+.++. ..+++.++.
T Consensus 228 ~~~KPVv~~k~Grs-~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~~--~~~el~------~~~~~l~~~~~~~g~rv 298 (447)
T TIGR02717 228 SKKKPIVVLKSGTS-EAGAKAASSHTGALAGSDEAYDAAFKQAGVIRAD--SIEELF------DLARLLSNQPLPKGNRV 298 (447)
T ss_pred cCCCCEEEEecCCC-hhhhhhhhhccccccChHHHHHHHHHHCCeEEeC--CHHHHH------HHHHHHhcCCCCCCCeE
Confidence 46899999999999 57776 699999999999999999999977654 444444 3333333 234688999
Q ss_pred EEEehhHHHHHH
Q psy3769 617 GIIFGTFGAIAI 628 (974)
Q Consensus 617 ai~~g~~ga~~~ 628 (974)
++++.++|..++
T Consensus 299 aivs~sGG~g~l 310 (447)
T TIGR02717 299 AIITNAGGPGVI 310 (447)
T ss_pred EEEECCchHHHH
Confidence 999999998774
No 13
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=100.00 E-value=7.5e-56 Score=483.88 Aligned_cols=272 Identities=57% Similarity=0.940 Sum_probs=249.0
Q ss_pred HHHhhcCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCcccc--ccccccchhhhcccCCCcEEEEE
Q psy3769 308 KIMMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFE--EIPIFDTVKNAKNETGATVSVIY 385 (974)
Q Consensus 308 ~~il~~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~--G~~~y~sl~dip~~~~vDlavi~ 385 (974)
..++-|++.|++ ++|+|++.|.++.++++++|.+ .|.+|||+++|++++ |+|||+|++|+|+.+.+|+++|+
T Consensus 22 ~~i~~~~~t~v~---vqGitg~~g~~h~~~~~~ygt~---iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~avI~ 95 (317)
T PTZ00187 22 PRVWVNKNTKVI---CQGITGKQGTFHTEQAIEYGTK---MVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADASVIY 95 (317)
T ss_pred ccEEEcCCCeEE---EecCCChHHHHHHHHHHHhCCc---EEEEECCCCCCceEecCCccccCCHHHHhcccCCCEEEEe
Confidence 345567788877 5899999999999999999988 899999999999999 99999999999985559999999
Q ss_pred ecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccCccccccCCCCCCCCCCEEE
Q psy3769 386 VPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIHKKGRIGV 465 (974)
Q Consensus 386 vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~~~G~va~ 465 (974)
+|++.++++++||+++|+|.++|+|+||++.+..++.++++ .++|+|++||||+|++||.....+.+|...++||+||+
T Consensus 96 VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~-~~~g~rliGPNc~Gii~p~~~~~gi~p~~~~~~G~Vgi 174 (317)
T PTZ00187 96 VPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALL-SQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGKIGI 174 (317)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHh-hcCCCEEECCCCceEEcchhhccccCCcCCCCCCCEEE
Confidence 99999999999999999999999999999998777776663 16899999999999999987555666655668999999
Q ss_pred EeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh-cCCCC
Q psy3769 466 VSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK-NMKKP 544 (974)
Q Consensus 466 vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~-~~~KP 544 (974)
|||||++++++++++.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|.+|+.|+++++|+++ .++||
T Consensus 175 VSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~~~~~KP 254 (317)
T PTZ00187 175 VSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPIKKP 254 (317)
T ss_pred EeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHhhcCCCc
Confidence 99999999999999999999999999999998779999999999999999999999999999999999999998 57899
Q ss_pred EEEEecccCCCCCCCccCccccc----ccchhceeeccccccceee
Q psy3769 545 VIGFIAGITAPPGKRMGHAGALI----TEIKKMTFLTASNGISIIQ 586 (974)
Q Consensus 545 Vv~lk~Grs~~~g~~~sHTgala----g~~~~~~a~~~q~gi~~~~ 586 (974)
||++|+|||+|.|+++|||||++ |+++.++++++|+|+..+.
T Consensus 255 VVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~~ 300 (317)
T PTZ00187 255 VVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVVK 300 (317)
T ss_pred EEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEeC
Confidence 99999999977899999999999 9999999999999977643
No 14
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=100.00 E-value=7.3e-47 Score=392.32 Aligned_cols=202 Identities=43% Similarity=0.719 Sum_probs=183.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 2 NIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 2 ~L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
||||||||+||++||||||++.+++|++|+.++++++|..++|||||+++|||||+|||++++|++|+++++++|+++.+
T Consensus 1 ~l~EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l 80 (202)
T PF08442_consen 1 NLHEYQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTL 80 (202)
T ss_dssp BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEE
T ss_pred CchHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCce
Confidence 68999999999999999999999999999999999999667899999999999999999999999999999999999999
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
.|+||++.|.++++|||||++++.+|+|++++.||+.++|++++|.+|||+||++++++|+++.+++++|..|+++++++
T Consensus 81 ~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~~g~~~~~~~ 160 (202)
T PF08442_consen 81 KTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPTEGLTPYQAR 160 (202)
T ss_dssp E-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTTTB--HHHHH
T ss_pred EeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVI 203 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v 203 (974)
+++..+|+++...+++.+++.+||++|.++|++++|||||++
T Consensus 161 ~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~~ 202 (202)
T PF08442_consen 161 EIAKKLGLPGKLAEQLADILKKLYRLFREYDATLLEINPLVE 202 (202)
T ss_dssp HHHHHTTS-CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 999999999999999999999999999999999999999985
No 15
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=100.00 E-value=7.6e-45 Score=428.54 Aligned_cols=291 Identities=23% Similarity=0.269 Sum_probs=257.8
Q ss_pred cCCeEEEEEcccc---ccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecch
Q psy3769 313 QNNLKTILVNIFG---ITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAI 389 (974)
Q Consensus 313 ~~~~~~i~vni~G---~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~ 389 (974)
.|+..++ +| .+++.|+.+++||+++| +| .||||||++ +++.|++||+|++|+|+ .+|+++++||+.
T Consensus 9 ~p~svav----igas~~~~~vg~~i~~nL~~~g-~g--~i~PVnp~~--~~v~G~~ay~s~~~lp~--~~dlav~~v~~~ 77 (598)
T COG1042 9 APKSIAV----IGASERPGKLGYEILRNLLEYG-QG--KIYPVNPKY--DEVLGVKAYTSVADLPD--APDLAVIVVPAK 77 (598)
T ss_pred CCceEEE----eeccCCcchhHHHHHHHHHhcC-CC--ceEecCccc--cccccccccchHhhCCC--CCCeeEEEechh
Confidence 4665555 57 55679999999999998 98 899999999 89999999999999998 999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCChHHH------HHHHHHHhcCCCCceEEccCCccccccCccccccCCCCCCC--CC
Q psy3769 390 FATSAIWEAIESELELVICITEGIPVRDM------LILKNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIHK--KG 461 (974)
Q Consensus 390 ~v~~~v~e~~~~gv~~~vi~s~G~~e~~~------~~l~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~~--~G 461 (974)
.+++++++|.++|++.+|++++||.|.++ .++++.|+ ++++|++||||+|++++..++|+++.+.... +|
T Consensus 78 ~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~--~~~~rligPn~~G~~~~~~glna~f~p~~~~~~~g 155 (598)
T COG1042 78 VVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAAR--KYGMRIIGPNCLGLINPIIGLNATFDPVFGLGRGG 155 (598)
T ss_pred hhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHH--hcCceEeccccccccccccccccccCcccccccCC
Confidence 99999999999999999999999987753 46778899 9999999999999999999999888776555 89
Q ss_pred CEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh--
Q psy3769 462 RIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK-- 539 (974)
Q Consensus 462 ~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~-- 539 (974)
+++++||||+++..+++|+.+.++|+|+++|.||++ |+++.|+++|+.+|+.|++|.+|+|++ +++++|+++
T Consensus 156 ~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~a--d~~~~d~~~~~~~D~~tk~i~Ly~E~~----~~~r~fl~~a~ 229 (598)
T COG1042 156 GGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAA--DRDESDLLEYLADDPRTKAIGLYIEGV----KDGRKFLNAAR 229 (598)
T ss_pred CeEEEEechHHHHhccchhhhcCCceeEEEeecchh--hcCchHhHHHHhhCccceEEEEEeccc----hhHHHHHHHHH
Confidence 999999999999999999999999999999999996 999999999999999999999999998 789999987
Q ss_pred --cCCCCEEEEecccCCCCCCC--ccCcccccccchhceeeccccccceeeeeehhhhcChhHHHHHHHHcc-cCCcccc
Q psy3769 540 --NMKKPVIGFIAGITAPPGKR--MGHAGALITEIKKMTFLTASNGISIIQIILIDILLGSTDAIIIALACR-NLQPNIR 614 (974)
Q Consensus 540 --~~~KPVv~lk~Grs~~~g~~--~sHTgalag~~~~~~a~~~q~gi~~~~li~le~~Ls~Dn~~vial~~~-~lp~~~r 614 (974)
+++||+|++|+||| ..|++ .||||+|+|++..++++++|+|+.++. .++.++ .++.++. +.|+...
T Consensus 230 ~~~~~kpii~lk~gr~-~~~akAa~shTgslag~~~~y~Aa~~~agvir~~--~~~elf------~~~k~l~~~~~~~g~ 300 (598)
T COG1042 230 AAERKKPIIALKAGRS-EAGAKAAASHTGSLAGSDEAYDAAFKQAGVIRVE--SIEELF------DAAKALSHQPPPAGD 300 (598)
T ss_pred HHhcCCCEEEEeccCC-HHHHHHHhcccccccccchhhHHHHHhhCceecc--ChHHHH------HHHHHhccCCCCCCc
Confidence 68899999999999 57776 599999999999999999999977654 334443 3344333 3456889
Q ss_pred ceEEEehhHHHHHHHHH
Q psy3769 615 TKGIIFGTFGAIAIRII 631 (974)
Q Consensus 615 ~~ai~~g~~ga~~~R~~ 631 (974)
+..+++.++|..+++.=
T Consensus 301 ~~~ivtn~Gg~gvla~D 317 (598)
T COG1042 301 RVAIITNGGGPGVLAAD 317 (598)
T ss_pred ceeEEecCCCccccchh
Confidence 99999999999887643
No 16
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=4.4e-43 Score=411.37 Aligned_cols=262 Identities=21% Similarity=0.308 Sum_probs=219.2
Q ss_pred hcCCeEEEEEccccccCcccccchhhhhccCC----CCceEEEEecCCC-------CCccccccccccchhhhcccC-CC
Q psy3769 312 QQNNLKTILVNIFGITGKTGRFHTNLCLNYGN----GKKAFVAGVNPKK-------NGQKFEEIPIFDTVKNAKNET-GA 379 (974)
Q Consensus 312 ~~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~----~g~~~V~pVnP~~-------~g~~i~G~~~y~sl~dip~~~-~v 379 (974)
-+++++++|.|.. .+..+.|+++.| +.|++..-|+|.. -|+++.|+|+|.|++|+.+++ .+
T Consensus 7 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~ 79 (608)
T PLN02522 7 FSRTTQALFYNYK-------QLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTA 79 (608)
T ss_pred ecCCceeEEEcCc-------HHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCC
Confidence 3567888875543 234556676665 2255566678853 246788999999999998766 78
Q ss_pred cEEEEEecchhHHH-HHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccCc-ccc--c----
Q psy3769 380 TVSVIYVPAIFATS-AIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPEE-IKI--G---- 451 (974)
Q Consensus 380 Dlavi~vp~~~v~~-~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~-~~~--~---- 451 (974)
|..++++|+..+.+ ++++|.++|+|.+||+|+||+|.++++++++|| ++|+|++||||+|++||.. ++. .
T Consensus 80 ~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar--~~g~rlIGPNc~Gii~p~~~kig~~~~~~~ 157 (608)
T PLN02522 80 DVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYAR--ANNKVVIGPATVGGIQAGAFKIGDTAGTLD 157 (608)
T ss_pred cEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHH--HcCCEEECCCCCeeEccCcccccccccccc
Confidence 99999999988766 666666789999999999999999999999999 9999999999999999987 321 1
Q ss_pred -cCCCCCCCCCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEc-cCCCc
Q psy3769 452 -IMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGE-IGGLD 529 (974)
Q Consensus 452 -~~~~~~~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E-~~g~~ 529 (974)
.+++..++||+||+|||||++++++++++.++|+|||++||+||+++.++++.|+|+||.+||+|++|++|+| ++
T Consensus 158 ~~~~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg--- 234 (608)
T PLN02522 158 NIIQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGG--- 234 (608)
T ss_pred cccCcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCc---
Confidence 1223345799999999999999999999999999999999999998667999999999999999999999999 76
Q ss_pred hHHHHHHHHh----cCCCCEEEEecccCCC---CCCCccCcccccccc----hhceeeccccccceee
Q psy3769 530 EIYAANWIKK----NMKKPVIGFIAGITAP---PGKRMGHAGALITEI----KKMTFLTASNGISIIQ 586 (974)
Q Consensus 530 ~~~~~~f~~~----~~~KPVv~lk~Grs~~---~g~~~sHTgalag~~----~~~~a~~~q~gi~~~~ 586 (974)
+++++|+++ .++||||++|+|||++ .++++|||||++|++ +.++++++|+|+....
T Consensus 235 -~~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~ 301 (608)
T PLN02522 235 -RDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPT 301 (608)
T ss_pred -hhHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeC
Confidence 677888776 4689999999999962 355689999999998 7899999999988754
No 17
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=8.8e-42 Score=357.91 Aligned_cols=252 Identities=58% Similarity=0.950 Sum_probs=239.7
Q ss_pred HhhcCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecch
Q psy3769 310 MMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAI 389 (974)
Q Consensus 310 il~~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~ 389 (974)
++-+++.|++ ++|+|++.|.++.++++++|++ .|..|+|+.+|+++.|+|+|.+++|+.+++.+|+.+|+||+.
T Consensus 3 il~~k~tkvi---vqGitg~~gtfh~~~~l~yGt~---~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~ 76 (293)
T COG0074 3 ILLNKDTKVI---VQGITGKQGTFHTEQMLAYGTK---IVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPP 76 (293)
T ss_pred eeecCCCeEE---EeccccccchHHHHHHHHhCCc---eeecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcH
Confidence 3456788887 5899999999999999999998 799999999999999999999999999878899999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccCccccccCCCCCCCCCCEEEEeCC
Q psy3769 390 FATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRS 469 (974)
Q Consensus 390 ~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~~~G~va~vSQS 469 (974)
++.+++.||+++|++.++++|+|+|..|+.++.++++ +.|+|++||||.|++.|.....+++|++.++||+|++||.|
T Consensus 77 ~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~--~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrS 154 (293)
T COG0074 77 FAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAR--EKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRS 154 (293)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHH--hcCCEEECCCCCccCcCCcceeeechhhhccCCceEEEecC
Confidence 9999999999999999999999999999999999999 99999999999999999988889999888999999999999
Q ss_pred hhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh-cCCCCEEEE
Q psy3769 470 GTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK-NMKKPVIGF 548 (974)
Q Consensus 470 G~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~-~~~KPVv~l 548 (974)
|++.+++..++.+.|+|+|.+|++|++.+.++++-|+|+.|.+||+|++|++..|..|+.|.++++|++. ..+||||++
T Consensus 155 GTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~~~~~KPVVa~ 234 (293)
T COG0074 155 GTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKANATRKPVVAY 234 (293)
T ss_pred cchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHHHHHHHHhccCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 555999999
Q ss_pred ecccCCCCCCCccCccccccc
Q psy3769 549 IAGITAPPGKRMGHAGALITE 569 (974)
Q Consensus 549 k~Grs~~~g~~~sHTgalag~ 569 (974)
-+|||+|.|+|+.|+||+...
T Consensus 235 iaG~tap~gkrmGhaGaiv~~ 255 (293)
T COG0074 235 IAGRTAPEGKRMGHAGAIVSG 255 (293)
T ss_pred EeccCCCccchhhhhhhhhcC
Confidence 999999999999999999875
No 18
>KOG1255|consensus
Probab=100.00 E-value=1e-37 Score=315.20 Aligned_cols=268 Identities=54% Similarity=0.918 Sum_probs=243.6
Q ss_pred HHhhcCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecc
Q psy3769 309 IMMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPA 388 (974)
Q Consensus 309 ~il~~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~ 388 (974)
.++-+++.|+|+ +|+|+|.|.++-+++++||.+ .|-.|||+.+|++-+|+|+|.|++|+.++..+|.-+|+||+
T Consensus 32 nl~ink~TkVi~---QGfTGKqgTFHs~q~~eYgTk---~VgG~~pkK~Gt~HLG~PVF~sV~eA~~~t~a~AsvIyVPp 105 (329)
T KOG1255|consen 32 NLKINKDTKVIC---QGFTGKQGTFHSQQALEYGTK---VVGGVNPKKGGTTHLGLPVFNSVAEAKKETGADASVIYVPP 105 (329)
T ss_pred ceeecCCceEEE---ecccCCccceeHHHHHHhCCc---eeeccCCCcCcccccCchhhhhHHHHHHhhCCCceEEEeCC
Confidence 355578889884 899999999999999999988 79999999999999999999999999988899999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccCccccccCCCCCCCCCCEEEEeC
Q psy3769 389 IFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSR 468 (974)
Q Consensus 389 ~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~~~G~va~vSQ 468 (974)
.....+++|++++.+..+|++++|++..++.++..... ++...|++||||.|+|+|.....+.+|+...++|.|++||+
T Consensus 106 p~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~-~Q~KtRLvGPNCPGII~p~qckIGImPg~Ihk~G~IGIVSR 184 (329)
T KOG1255|consen 106 PFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALN-SQSKTRLVGPNCPGIINPGQCKIGIMPGHIHKRGKIGIVSR 184 (329)
T ss_pred hhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHh-hcccceecCCCCCCccCccceeecccccccccCCeeEEEec
Confidence 99999999999999999999999999999887766664 36788999999999999999999999998899999999999
Q ss_pred ChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh----cCCCC
Q psy3769 469 SGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK----NMKKP 544 (974)
Q Consensus 469 SG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~----~~~KP 544 (974)
||++.++.+.+..+-|+|.|.+|++|++++.+.+|-|+|+-|.+||+|+.|+|..|..|..|.++++|++. +..||
T Consensus 185 SGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~flk~~nSg~~~kP 264 (329)
T KOG1255|consen 185 SGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAEFLKEYNSGSTAKP 264 (329)
T ss_pred CCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHHHHHHHHHhccCCCCCc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999998 46799
Q ss_pred EEEEecccCCCCCCCccCcccccccchhc----eeeccccccc
Q psy3769 545 VIGFIAGITAPPGKRMGHAGALITEIKKM----TFLTASNGIS 583 (974)
Q Consensus 545 Vv~lk~Grs~~~g~~~sHTgalag~~~~~----~a~~~q~gi~ 583 (974)
||.+-+|.++|.|+|++|+||+.....-. -.+++.+|+.
T Consensus 265 VvsFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~ 307 (329)
T KOG1255|consen 265 VVSFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVV 307 (329)
T ss_pred eeEEeecccCCCcccccccceeeeCCCccHHHHHHHHHhcCeE
Confidence 99999999999999999999997643221 1245666644
No 19
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=8.5e-39 Score=332.31 Aligned_cols=167 Identities=22% Similarity=0.481 Sum_probs=156.7
Q ss_pred ehhhhcChhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Q psy3769 589 LIDILLGSTDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNLKYIKIIGGFLLFWISIKLLSNDHNYT 668 (974)
Q Consensus 589 ~le~~Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~~~~~~~gg~~Ll~~~~~~~~~~~~~~ 668 (974)
.+|.+||+||+++++++++++|+++|+++++||++||+++|++|+++++|++++||++++||+||+|+++|+++++++++
T Consensus 2 ~lE~vLS~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~~~~l~~iGG~~Ll~~~~k~l~~~~~~~ 81 (215)
T TIGR03716 2 ILEGLLSADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIKFWWIKAIGALYLLYLAIKHFRKKKKGK 81 (215)
T ss_pred chhHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998753221
Q ss_pred ---c---ccCCCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy3769 669 ---T---IASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSI 742 (974)
Q Consensus 669 ---~---~~~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~~~~l 742 (974)
+ .+..+++|.++.+|+++|++||+|||+|++|+|+ |++++++|+++|+++||++|++++++++|||++
T Consensus 82 ~~~~~~~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~------~~~ii~~g~~~sIl~lr~~s~~l~~li~r~p~L 155 (215)
T TIGR03716 82 EDEEAEKKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSG------QFWVVFLGGIIGILIMRFAATIFVKLLERFPEL 155 (215)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhhHHHHHHhcc------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2234689999999999999999999999999998 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q psy3769 743 IILCSILLGYLSGNMIFSD 761 (974)
Q Consensus 743 ~~~~~~~l~~ig~~l~~~~ 761 (974)
+++++++|+|+|+||++++
T Consensus 156 ~~~~~~iL~~ig~kLil~~ 174 (215)
T TIGR03716 156 ETAAFLLIGWIGVKLLLET 174 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 20
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.1e-37 Score=319.16 Aligned_cols=169 Identities=34% Similarity=0.623 Sum_probs=157.4
Q ss_pred eeeehhhhcChhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccc
Q psy3769 586 QIILIDILLGSTDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNL-KYIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 586 ~li~le~~Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~-~~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
+++.+|.+||+||+++++++++++|+++|++++++|+.||+++|++|+++++|++++ ||++++||+||+|+|+|+++++
T Consensus 2 tl~~lE~~Ls~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~~~~ 81 (183)
T PF03741_consen 2 TLVLLEIVLSIDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLLHEE 81 (183)
T ss_pred chhhhhHHHHhhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999999999999999999999 9999999999999999999875
Q ss_pred CC------------cccccCCCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHH
Q psy3769 665 HN------------YTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLV 732 (974)
Q Consensus 665 ~~------------~~~~~~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~ 732 (974)
.+ +......+++|.++.+|+++|++||+|||+|++|+|+ |++++++|+++|+++||++|+++
T Consensus 82 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~------~~~iv~~g~i~si~~m~~~~~~~ 155 (183)
T PF03741_consen 82 RDEDPENAEVEEEKKFFPVSKSSLWLAVIQIELADLVFSLDSVLAAVGITD------DFFIVITGNIISILLMRFLSFLL 155 (183)
T ss_pred cccccchhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 41 0112234689999999999999999999999999998 69999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhc
Q psy3769 733 LILIEKFSSIIILCSILLGYLSGNMIFS 760 (974)
Q Consensus 733 ~~~~~~~~~l~~~~~~~l~~ig~~l~~~ 760 (974)
+++++|||+++++++++|+|+|+||++|
T Consensus 156 ~~~l~~~p~l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 156 AKLLERFPYLKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999975
No 21
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=2.9e-36 Score=306.57 Aligned_cols=172 Identities=48% Similarity=0.835 Sum_probs=162.0
Q ss_pred eeeeehhhhcChhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy3769 585 IQIILIDILLGSTDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNLKYIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 585 ~~li~le~~Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~~~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
++++.+|.+||+||+++++++++++|+++|++++.+|+.+|.++|++|++++.|++++||++++||++|+|+|+||++++
T Consensus 3 ~~li~le~vLs~DN~~vi~~~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~~~~~~iaGGllLl~ia~~ml~~~ 82 (176)
T TIGR03717 3 LQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLAIPFLKLIGGLLLLWIGWKLLLEE 82 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCcc--cccCCCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy3769 665 HNYT--TIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSI 742 (974)
Q Consensus 665 ~~~~--~~~~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~~~~l 742 (974)
++++ +.+..+++|.++.+|+++|++||+|||+|++|+|+| |++++++|+++|+|.|++.|++++++++|||++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~-----~~~li~~g~~i~i~~m~~~s~~~~~~~~~~p~l 157 (176)
T TIGR03717 83 EEEQGGDVKGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHG-----HLGLLIFGLLLSIPIIVWGSTLILKLMDRFPWI 157 (176)
T ss_pred cccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 234568999999999999999999999999999986 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q psy3769 743 IILCSILLGYLSGNMIFSD 761 (974)
Q Consensus 743 ~~~~~~~l~~ig~~l~~~~ 761 (974)
+++++.+|+|+|+||+++|
T Consensus 158 ~~~~~~~L~~ig~kl~~~d 176 (176)
T TIGR03717 158 IYIGAALLGYVAGEMIVTD 176 (176)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999875
No 22
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=314.82 Aligned_cols=180 Identities=29% Similarity=0.493 Sum_probs=163.4
Q ss_pred ccccceeeeeehhhhcChhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy3769 579 SNGISIIQIILIDILLGSTDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNLKY-IKIIGGFLLFWIS 657 (974)
Q Consensus 579 q~gi~~~~li~le~~Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~~~-~~~~gg~~Ll~~~ 657 (974)
..|+.+++++.+|.+|++||+++++++++++|+++|+|++++|++||.++|+++++.++||++.|+ +.++||++|+|++
T Consensus 15 ~~~~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~l~~~fg~~L~~~~ 94 (254)
T COG0861 15 AAWVALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQPLLYIFGLYLLWRD 94 (254)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334567789999999999999999999999999999999999999999999999999999998864 8888899999999
Q ss_pred HHhhcccCCcc------------ccc--------CCCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHH
Q psy3769 658 IKLLSNDHNYT------------TIA--------SGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIG 717 (974)
Q Consensus 658 ~~~~~~~~~~~------------~~~--------~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g 717 (974)
+||+.+++++. ..+ ..++||.++.+|+++|++||+|||+|++|+|+ |++++++|
T Consensus 95 ~~ll~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~~------~~~im~~a 168 (254)
T COG0861 95 IKLLLGGLFLLFKATKELHERLEGEEFFVNGKLKKATPFWGAIIQIELADLVFSLDSVIAAVGMAG------HPFVMVTA 168 (254)
T ss_pred HHHHhcchhHHHHHHHHHhhhhccccccccccccccCcHHHHHHHHHHHHHHHhhhHHHHHHHHhc------CchHHHHH
Confidence 99997643210 011 33889999999999999999999999999998 69999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcccch
Q psy3769 718 ILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSGNMIFSDQSL 764 (974)
Q Consensus 718 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~ig~~l~~~~~~~ 764 (974)
+++|+++||++|+++++++||||+++++++++|+|+|+||++++...
T Consensus 169 ~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~IG~kli~~~~~~ 215 (254)
T COG0861 169 VIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGVKLILEGLAH 215 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999544
No 23
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=100.00 E-value=2.1e-35 Score=319.14 Aligned_cols=179 Identities=18% Similarity=0.306 Sum_probs=160.7
Q ss_pred cccccceeeeeehhhhcChhHHHHHHHHc--ccCCccccceEEEehhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy3769 578 ASNGISIIQIILIDILLGSTDAIIIALAC--RNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLL-NLKYIKIIGGFLLF 654 (974)
Q Consensus 578 ~q~gi~~~~li~le~~Ls~Dn~~vial~~--~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll-~~~~~~~~gg~~Ll 654 (974)
.+.+..+++...+|.+||+||++++++++ .++|+++|+|+++||+.||+++|++|++++++|+ ++||++++||+||+
T Consensus 59 ~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi 138 (302)
T TIGR03718 59 GEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFHWVLYIFGAFLL 138 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444556777899999999999999965 4899999999999999999999999999999999 58999999999999
Q ss_pred HHHHHhhcccCCccccc-------------------------------CCCcHHHHHHHHHHHHHhhhhchHHHHHHhcc
Q psy3769 655 WISIKLLSNDHNYTTIA-------------------------------SGKNLIHAIKTIIFADLIMSIDNVLAIAGTAS 703 (974)
Q Consensus 655 ~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~ 703 (974)
|+|+|++++++++++.+ ..+|++.++.+|+++|++||+|||||++|+|+
T Consensus 139 ~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~~tpl~~vli~Ie~~DlvFslDSIpAi~aiT~ 218 (302)
T TIGR03718 139 YTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKRYATPLFLVLVLVETTDLIFAVDSIPAIFAITQ 218 (302)
T ss_pred HHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCceeeeecCceecCcHHHHHHHHHHHHHHHhhccHHHHHHhhc
Confidence 99999998643221110 12689999999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhccc
Q psy3769 704 QISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSGNMIFSDQ 762 (974)
Q Consensus 704 ~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~ig~~l~~~~~ 762 (974)
+++++++|++++++++|++|++++++++|||+|+|+++.+|+|+|+||++++.
T Consensus 219 ------d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~L~~~~a~iL~fIGvkmll~~~ 271 (302)
T TIGR03718 219 ------DPFIVFTSNIFAILGLRSLYFLLAGLLERFHYLKYGLAVILVFIGVKMLLHAT 271 (302)
T ss_pred ------CCeEEehHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 59999999999999999999999999999999999999999999999999863
No 24
>PRK06091 membrane protein FdrA; Validated
Probab=100.00 E-value=6.3e-33 Score=319.25 Aligned_cols=183 Identities=22% Similarity=0.417 Sum_probs=158.1
Q ss_pred cccccccccchh-hhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccC
Q psy3769 360 KFEEIPIFDTVK-NAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPN 438 (974)
Q Consensus 360 ~i~G~~~y~sl~-dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPn 438 (974)
.+.+.++|++.. ++|+ +|+|+|++|++.+++++++|+++| +.++++|+||+.+.+++|+++|+ ++|+|++|||
T Consensus 101 ~~~~~~t~~~a~~~lpe---~DLAvIsVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~Ar--~~GlrvmGPN 174 (555)
T PRK06091 101 SLTQVRRWDSACQKLPD---ANLALISVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRAR--EKGLLVMGPD 174 (555)
T ss_pred CCcccccHHHHHhcCCC---CCEEEEecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHHH--HcCCEEECCC
Confidence 344567888855 5654 599999999999999999999999 67899999999888899999999 9999999999
Q ss_pred CccccccCccccccCCCCCCCCCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCC----CCCCHHHHHHHhhhCC
Q psy3769 439 CPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPI----NGLKYIDILKLFNEDQ 514 (974)
Q Consensus 439 c~G~~~~~~~~~~~~~~~~~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~----~dv~~~d~l~~l~~Dp 514 (974)
| |+.| ..+++.++.. .++||+||+|||||+++.+++.|+.++|+|||++||+||+.+ .|+++.|+|+||.+||
T Consensus 175 C-G~~~-i~gl~lsF~~-~~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP 251 (555)
T PRK06091 175 C-GTAM-IAGTPLAFAN-VMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADE 251 (555)
T ss_pred C-hhhh-hcCCcccccC-CCCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCC
Confidence 9 7777 4566655543 346999999999999999999999999999999999999921 2789999999999999
Q ss_pred CccEEEEEE----ccCCCchHHHHHHHHh--cCCCCEEEEecccCCCCCC
Q psy3769 515 NTDAVIMIG----EIGGLDEIYAANWIKK--NMKKPVIGFIAGITAPPGK 558 (974)
Q Consensus 515 ~t~~I~ly~----E~~g~~~~~~~~f~~~--~~~KPVv~lk~Grs~~~g~ 558 (974)
+|++|++|+ |++ + ++|+++ +.+||||++|+|||+ .|+
T Consensus 252 ~TkvIvly~kppaE~v----~--~~fl~aar~~~KPVVvlk~Grs~-~g~ 294 (555)
T PRK06091 252 KSEVIAFVSKPPAEAV----R--LKIINAMKATGKPVVALFLGYTP-AVA 294 (555)
T ss_pred CCcEEEEEEecCchHH----H--HHHHHHHhhCCCCEEEEEecCCc-hhh
Confidence 999999999 766 4 499987 568999999999984 544
No 25
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=100.00 E-value=2.4e-33 Score=295.74 Aligned_cols=197 Identities=21% Similarity=0.371 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEe---eeecCcccccCeEEE-eCCHHHHHHHHHHHHh
Q psy3769 3 IYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKA---QIHAGGRGKCGGIKL-AQSLEQVEKYTKKILG 78 (974)
Q Consensus 3 L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~---qi~~ggrgk~GGV~l-~~s~ee~~~a~~~~l~ 78 (974)
|+|+|+|++|+.||||+|++++++|++||.++++++| ||||+|. ++.| |++.|||++ ++|++++++++++|.+
T Consensus 10 L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig-~PvvlKi~sp~i~H--Ksd~GgV~L~l~~~~~v~~a~~~l~~ 86 (222)
T PF13549_consen 10 LTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIG-FPVVLKIVSPDIAH--KSDVGGVRLNLNSPEEVREAFERLRE 86 (222)
T ss_dssp E-HHHHHHHHHTTT------EEESSHHHHHHHHHHH--SSEEEEEE-TT-----HHHHT-EEEEE-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhC-CCEEEEEecCCCCc--CCCCCcEEECCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999 9999998 5777 999999999 9999999999999987
Q ss_pred ccccccccCCCCCceeEEEEEEEec-cceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCH
Q psy3769 79 MQLITSQTNQEGENVFCVLIEEYID-IKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTK 157 (974)
Q Consensus 79 ~~~~t~q~~~~g~~~~~vLVee~v~-~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~ 157 (974)
+.. ....+..+++|+||+|++ .+.|+.+|+.+|+.|| |+++++ .||+.+|.++|.+ +.++| ++.
T Consensus 87 ~~~----~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FG-Pvv~~G-~GG~~vE~~~D~~------~~l~P---l~~ 151 (222)
T PF13549_consen 87 RVA----AHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFG-PVVMFG-LGGIFVELLKDVA------FRLPP---LSE 151 (222)
T ss_dssp HHH----HH-TT----EEEEEE------EEEEEEEEEETTTE-EEEEEE-E-STTHHHH---E------EEESS-----H
T ss_pred HHH----HhCCCCccceEEEEEcccCCcEEEEEEEEECCCCC-CEEEEc-CCCceeeeecceE------EeeCC---CCH
Confidence 643 111346789999999998 8999999999999876 778888 9999999999976 89999 999
Q ss_pred HHHHHHHHHC----------CCChhhHHHHHHHHHHHHhhcccC-CeeEEeeceeEEccCCcEEEEEEEEee
Q psy3769 158 NNIDNISKKI----------SIPKNSLINFYEEIQNIYKSYWET-DSLLLEINPLVINSKNKIISLDIKFNF 218 (974)
Q Consensus 158 ~~a~~~~~~l----------g~~~~~~~~l~~~l~~L~~l~~~~-d~~~lEINPL~v~~~g~~~alDaki~l 218 (974)
.++++|++++ |.++.|.+++.+++.++++++.++ ++.++||||++++++| ++|+||+|++
T Consensus 152 ~~a~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g-~~avDa~i~l 222 (222)
T PF13549_consen 152 ADAREMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDG-AVAVDARIRL 222 (222)
T ss_dssp HHHHHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS--EEE--EEEEE
T ss_pred HHHHHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCc-eEEEEEEEEC
Confidence 9999999998 567889999999999999999885 5999999999999998 9999999975
No 26
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=99.97 E-value=1.1e-31 Score=262.84 Aligned_cols=120 Identities=23% Similarity=0.387 Sum_probs=82.5
Q ss_pred CCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh
Q psy3769 460 KGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK 539 (974)
Q Consensus 460 ~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~ 539 (974)
||+||+|||||+++.+++++++++|+|||++||+||++ |+++.|+++||.+||+||+|++|+|++ +|+++|+++
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--dv~~~d~l~~~~~D~~t~~I~ly~E~~----~d~~~f~~~ 74 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEA--DVDFADLLEYLAEDPDTRVIVLYLEGI----GDGRRFLEA 74 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-S--SS-HHHHHHHHCT-SS--EEEEEES------S-HHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccc--cCCHHHHHHHHhcCCCCCEEEEEccCC----CCHHHHHHH
Confidence 69999999999999999999999999999999999995 999999999999999999999999999 678899887
Q ss_pred ----cCCCCEEEEecccCCCCCCC--ccCcccccccchhceeeccccccceee
Q psy3769 540 ----NMKKPVIGFIAGITAPPGKR--MGHAGALITEIKKMTFLTASNGISIIQ 586 (974)
Q Consensus 540 ----~~~KPVv~lk~Grs~~~g~~--~sHTgalag~~~~~~a~~~q~gi~~~~ 586 (974)
++.||||++|+||| +.|++ .||||+++|++.+++++++|+|+.++.
T Consensus 75 ~~~a~~~KPVv~lk~Grt-~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v~ 126 (138)
T PF13607_consen 75 ARRAARRKPVVVLKAGRT-EAGARAAASHTGSLAGDDAVYDAALRQAGVVRVD 126 (138)
T ss_dssp HHHHCCCS-EEEEE----------------------HHHHHHHHHHCTEEEES
T ss_pred HHHHhcCCCEEEEeCCCc-hhhhhhhhccCCcccCcHHHHHHHHHHcCceEEC
Confidence 55699999999998 58887 599999999999999999999977654
No 27
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=99.97 E-value=1.3e-30 Score=264.78 Aligned_cols=133 Identities=18% Similarity=0.289 Sum_probs=123.4
Q ss_pred hhhhhhhhcccccccceeEEEEeecCchhhhccCCEEEEEcCCCCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcC
Q psy3769 841 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQG 920 (974)
Q Consensus 841 ~~ll~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~~~v~l~~~~~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~L~g 920 (974)
++++.+|+|.++||+|||||++|+||+|++|.....+|+..+.++.+++++++++|.|++.++++|+||+|||+|++|+|
T Consensus 3 ~~~v~vG~I~~~hGlkGevkv~~~td~p~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~lv~f~gi~dr~~Ae~l~g 82 (169)
T PRK14591 3 QDFVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKVYIKLANINNADTAKKYVN 82 (169)
T ss_pred CcEEEEEEEeCCccccEEEEEEECCCCHHHhcCCCeEEEEecCCCceeEEEEEEEEEECCEEEEEEcCCCCHHHHHHhcC
Confidence 34789999999999999999999999999999999889864332346789999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCceeeccccCeEEEecCCcEeEEEEEeecCCCcceEeC
Q psy3769 921 YYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGIKLL 974 (974)
Q Consensus 921 ~~l~v~~~~lp~ll~e~e~y~~DLiG~~V~d~~g~~lG~V~~v~~~ga~dv~~~ 974 (974)
++||++++++|++ ++|||||+|||||+|+|++|+.||+|++|+++|+||+|++
T Consensus 83 ~~l~v~~~~lp~l-~e~E~Y~~dLiG~~V~d~~g~~lG~V~~v~~~ga~dll~I 135 (169)
T PRK14591 83 ALIGVPKRALPQL-AEDEVYFKDLIGCSVKNINNDSFGVVVDIIETGANEVLVC 135 (169)
T ss_pred CEEEEEHHHCCCC-CCCCEEeeeecCcEEEeCCCCEEEEEEEEeecCCceEEEE
Confidence 9999999999997 9999999999999999999999999999999999999974
No 28
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.7e-30 Score=261.42 Aligned_cols=132 Identities=28% Similarity=0.503 Sum_probs=122.8
Q ss_pred hhhhhhhhcccccccceeEEEEeecCchhhhccCCEEEEEcCCCCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcC
Q psy3769 841 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQG 920 (974)
Q Consensus 841 ~~ll~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~~~v~l~~~~~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~L~g 920 (974)
++++.+|+|.++||++|||||+|+||+|+.+.....+++..+ +..++.++++++|.|++.+++||+||+|||+|++|+|
T Consensus 5 ~~~~~vGkI~~t~Gi~GevrV~s~Td~~~~~~~~~~~~~~~~-~~~~~~~~v~~~r~~~~~~i~kf~gi~dr~~ae~l~G 83 (174)
T COG0806 5 ENLLLVGKIVSTHGIRGEVRVKSFTDFPESLFDYGPWLLLKP-GGEWQELTVESVRKHKNLLILKFKGIDDRNAAEALKG 83 (174)
T ss_pred cceEEEEEEEecccccEEEEEEECCCCHHHhcCcCcEEEecC-CCceEEEEEEEeeecCCEEEEEeCCCCCHHHHHHhcC
Confidence 488999999999999999999999999977777776776654 3456899999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCceeeccccCeEEEecCCcEeEEEEEeecCCCcceEeC
Q psy3769 921 YYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGIKLL 974 (974)
Q Consensus 921 ~~l~v~~~~lp~ll~e~e~y~~DLiG~~V~d~~g~~lG~V~~v~~~ga~dv~~~ 974 (974)
++++++++++|++ +||||||+||+||+|+|++|+.||+|++|+++|+||++++
T Consensus 84 ~~i~v~~~~~p~l-~EdEfY~~DLiG~~V~~~~g~~lG~V~~i~~~Ga~Dvl~V 136 (174)
T COG0806 84 YEIFVDRSELPEL-EEDEFYYHDLIGLEVVTEDGELLGKVTEILETGANDVLVV 136 (174)
T ss_pred cEEEEEHHHCCCC-CCCcEEeEeecCcEEEcCCCcEEEEEEEEeeCCCccEEEE
Confidence 9999999999998 9999999999999999999999999999999999999975
No 29
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=99.96 E-value=2e-29 Score=257.49 Aligned_cols=134 Identities=25% Similarity=0.446 Sum_probs=122.7
Q ss_pred cchhhhhhhhhcccccccceeEEEEeecCchhhhccCCEEEEEcCCCCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHh
Q psy3769 838 LTVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATK 917 (974)
Q Consensus 838 ~tv~~ll~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~~~v~l~~~~~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~ 917 (974)
++..+++.+|+|.++||+|||+|++|+||+|++|.....+|+ .. ....++++++++|.+++.+++||+||+|||+|++
T Consensus 2 ~~~~~~v~iG~i~~~hGlkGevkv~~~td~p~~~~~~~~~~~-~~-~~~~~~~~v~~~~~~~~~~lvkf~gi~~~~~Ae~ 79 (172)
T PRK00122 2 SKPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLL-GK-GGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEA 79 (172)
T ss_pred CCccceEEEEEEECCCcccEEEEEEEecCCHHHHcCcCcEEE-cc-CCceEEEEEEEEEEECCEEEEEECCCCCHHHHHH
Confidence 445689999999999999999999999999987776666776 33 2346789999999999999999999999999999
Q ss_pred hcCCEEEEeCCCCCCCCCCCceeeccccCeEEEecCCcEeEEEEEeecCCCcceEeC
Q psy3769 918 LQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGIKLL 974 (974)
Q Consensus 918 L~g~~l~v~~~~lp~ll~e~e~y~~DLiG~~V~d~~g~~lG~V~~v~~~ga~dv~~~ 974 (974)
|+|++||++++++|++ ++|||||+|||||+|+|++|+.+|+|++|+++|+||++++
T Consensus 80 l~g~~l~i~~~~lp~l-~~~e~y~~dLiG~~V~d~~g~~lG~V~~v~~~~a~dll~I 135 (172)
T PRK00122 80 LKGCELFVPRSQLPEL-EEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVV 135 (172)
T ss_pred hCCCEEEEEHHHCCCC-CCCCEEHHHhCCcEEEeCCCcEEEEEEEEccCCCceEEEE
Confidence 9999999999999997 9999999999999999999999999999999999999974
No 30
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=99.96 E-value=3.4e-29 Score=254.42 Aligned_cols=131 Identities=21% Similarity=0.319 Sum_probs=120.0
Q ss_pred hhhhhcccccccceeEEEEeecCchhhhccCCEEEEEcCC-CCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCE
Q psy3769 844 ITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPN-SLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYY 922 (974)
Q Consensus 844 l~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~~~v~l~~~~-~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~L~g~~ 922 (974)
+.+|+|.++||+||||||+|+||+|++|.....+|+..+. ...+++++++++|.|++.++++|+||+|||+|++|+|++
T Consensus 1 ~~vG~I~~~hGlkGevkv~~~td~pe~~~~~~~~~~~~~~~~~~~~~~~v~~~r~~~~~~lv~f~gi~~~e~Ae~L~g~~ 80 (171)
T PRK14590 1 ISLGQLGKPFGIKGWLRVNVRGETLHTLKAPATLKLGKEDPQFPESEIALLEIRPHGGKFLVRFEGYDTPEEAVKWRGGS 80 (171)
T ss_pred CeEEEEeCCEeeCeEEEEEEccCCHHHhcCCCEEEEecCCCCCCeeEEEEEEEEEECCEEEEEECCCCCHHHHHHhcCCE
Confidence 3589999999999999999999999999999999985432 234568999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCceeeccccCeEEEecCCcEeE-EEEEeecCCCcceEeC
Q psy3769 923 LKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLG-TVTEIIQNKLTGIKLL 974 (974)
Q Consensus 923 l~v~~~~lp~ll~e~e~y~~DLiG~~V~d~~g~~lG-~V~~v~~~ga~dv~~~ 974 (974)
||++++++|+|.++|||||+|||||+|+|++|+.+| +|++|+++|+||++++
T Consensus 81 l~i~~~~lp~l~~e~e~y~~dLiG~~V~d~~g~~lGG~V~~v~~~~a~dllvV 133 (171)
T PRK14590 81 LFLPQELLPKIETKGEFYSEDLIGLQAIDETGKPLNWKLTDVQDNPAHPILVF 133 (171)
T ss_pred EEEEHHHCCCCCCCCCEEhHHccCcEEEeCCCCEeeeEEEEEecCCCceEEEE
Confidence 999999999962499999999999999999999997 9999999999999974
No 31
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=99.96 E-value=1.5e-28 Score=248.88 Aligned_cols=128 Identities=20% Similarity=0.271 Sum_probs=114.2
Q ss_pred hhhhhcccccccceeEEEEeecCchhhhccC--CEEEEEcCCCCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCC
Q psy3769 844 ITIGVVLRAYGIFGWILIKLFLDDKNIFFYA--RKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGY 921 (974)
Q Consensus 844 l~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~--~~v~l~~~~~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~L~g~ 921 (974)
+.+|+|.++||++|||||+|+||+|+.|... ..+++. +.+...++++++++|.|++.++++|+||+|||+|++|+|+
T Consensus 2 ~~iG~I~~~hGlkGevkV~~~td~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~r~~~~~~lvkf~gi~dr~~Ae~L~g~ 80 (166)
T PRK14594 2 FVKGIILSSYGINGYAKVKSISNNFCDFINLKNNKLVLK-KSNCSSIEVKVEDVSLKNNSLLLKFEEFNAPEPIKPLIGF 80 (166)
T ss_pred EEEEEEECceeeeEEEEEEEccCCHHHhhcccCcEEEEe-cCCCcEEEEEEEEEEEECCEEEEEEcCCCCHHHHHHhcCC
Confidence 4689999999999999999999988776432 234554 3333567899999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCceeeccccCeEEEecCCcEeEEEEEeecCCCcceEeC
Q psy3769 922 YLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGIKLL 974 (974)
Q Consensus 922 ~l~v~~~~lp~ll~e~e~y~~DLiG~~V~d~~g~~lG~V~~v~~~ga~dv~~~ 974 (974)
+||++++++|++ ++|||||+|||||+|+|+ |+.+|+|++|+++|+||+|++
T Consensus 81 ~l~v~~~~lp~l-~edE~Y~~dLiG~~V~~~-g~~lG~V~~v~~~ga~dll~V 131 (166)
T PRK14594 81 ELWVDDELASKL-EEGEYYFGKLIGYAIVND-GKELGEVVSFFECLNSVLLEV 131 (166)
T ss_pred EEEEEHHHCCCC-CCCcEeHhHccCeEEEEC-CEEEEEEEEEeeCCCcEEEEE
Confidence 999999999997 999999999999999994 999999999999999999974
No 32
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=99.95 E-value=1.2e-28 Score=249.68 Aligned_cols=126 Identities=27% Similarity=0.295 Sum_probs=115.3
Q ss_pred hhhhhhhcccccccceeEEEEeecCchhhhccCCEEEEEcCCCCceEEEEEEEEEEe-CCEEEEEecCCCCHHHHHhhcC
Q psy3769 842 HLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNH-GNYVLANLYGITDRNLATKLQG 920 (974)
Q Consensus 842 ~ll~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~~~v~l~~~~~~~~~~~~v~~~r~~-~~~~lvkf~gi~~re~Ae~L~g 920 (974)
+++.+|+|.++||+|||+|++|+||+|++|.....+++. ..+++++..|.+ ++.++++|+||+|||+|++|+|
T Consensus 1 ~~v~iG~I~~~hGlkGevkv~~~td~p~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~lv~f~gi~~~~~Ae~l~g 74 (165)
T PRK14592 1 DLICLGVITSPHGIKGHVKIKTFTEDPENISAYGKLTDG------SNTYKISVVSVIGANLVIAKISGINSRTEAELLRN 74 (165)
T ss_pred CEEEEEEEECCCccCEEEEEEECCCCHHHhcCCceEEEC------CEEEEEEEEEEecCCEEEEEEcCCCCHHHHHHhcC
Confidence 367899999999999999999999999999988876652 135788888876 5788999999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCceeeccccCeEEEecCCcEeEEEEEeecCCCcceEeC
Q psy3769 921 YYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGIKLL 974 (974)
Q Consensus 921 ~~l~v~~~~lp~ll~e~e~y~~DLiG~~V~d~~g~~lG~V~~v~~~ga~dv~~~ 974 (974)
++||++++++|+| ++|||||+||+||+|+|++|+.+|+|++|+++|+||++++
T Consensus 75 ~~l~v~~~~lp~l-~e~e~y~~dLiG~~V~~~~g~~lG~V~~v~~~ga~dvlvI 127 (165)
T PRK14592 75 KKLYVERSKLPNL-NEDEFYQSDLIGMEVKLEDNTIYGYIKKIYNFGSCDIIEI 127 (165)
T ss_pred CEEEEEHHHCCCC-CCCCEEHHHcCCcEEEcCCCCEEEEEEEEccCCCccEEEE
Confidence 9999999999998 9999999999999999999999999999999999999975
No 33
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=99.95 E-value=1.7e-28 Score=249.19 Aligned_cols=130 Identities=25% Similarity=0.429 Sum_probs=118.2
Q ss_pred hhhhhhcccccccceeEEEEeecCchhhhccCCEEEEEcCCCCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCE
Q psy3769 843 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYY 922 (974)
Q Consensus 843 ll~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~~~v~l~~~~~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~L~g~~ 922 (974)
|+.+|+|.++||++||+|++++||+|++|.....+++.... ...++++++++|.+++.+++||+||+|||+|++|+|++
T Consensus 1 ~v~iG~I~~~hGlkGevkv~~~td~p~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~lv~f~gi~~~~~Ae~L~g~~ 79 (165)
T TIGR02273 1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGS-KQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLE 79 (165)
T ss_pred CEEEEEEECCcccCEEEEEEEcCCCHHHHcCCCcEEEEcCC-CceEEEEEEEEEEECCEEEEEECCCCCHHHHHHhcCCE
Confidence 46789999999999999999999999877665556655433 24678999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCceeeccccCeEEEecCCcEeEEEEEeecCCCcceEeC
Q psy3769 923 LKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGIKLL 974 (974)
Q Consensus 923 l~v~~~~lp~ll~e~e~y~~DLiG~~V~d~~g~~lG~V~~v~~~ga~dv~~~ 974 (974)
||++++++|++ ++|||||+|||||+|+|++|+.+|+|++|+++|+||++++
T Consensus 80 l~i~~~~lp~l-~e~e~y~~dLiG~~V~d~~~~~lG~V~~v~~~~a~dll~V 130 (165)
T TIGR02273 80 LFVPREALPEL-EEDEYYWTDLIGLEVVTEEGEELGKVVEILETGANDVLVV 130 (165)
T ss_pred EEEEHHHCCCC-CCCCEEhhHhCCcEEEcCCCcEEEEEEEEecCCCccEEEE
Confidence 99999999997 9999999999999999999999999999999999999974
No 34
>PRK14593 rimM 16S rRNA-processing protein RimM; Provisional
Probab=99.95 E-value=4.1e-28 Score=249.96 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=115.4
Q ss_pred hhhhhhhcccccccceeEEEEeecCchhhhccCCEEEEEcCC----CCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHh
Q psy3769 842 HLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPN----SLKLFSIKILNKKNHGNYVLANLYGITDRNLATK 917 (974)
Q Consensus 842 ~ll~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~~~v~l~~~~----~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~ 917 (974)
+|+.+|+|.++||+|||||++++||+|++|.....+++.... .+.+++++++++|.+++ +++|+||+|||+|++
T Consensus 3 ~~i~iG~I~~~hGikGevkv~~~td~pe~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r~~~~--~v~f~gi~dr~~Ae~ 80 (184)
T PRK14593 3 SMLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSCASSFKDYVIHSYEHAKN--LLFLETIHTPEKAKE 80 (184)
T ss_pred cEEEEEEEECCEeeeEEEEEEECCCCHHHhccCCEEEEcccccccccCCceEEEEEEEEeeCC--EEEEcCCCCHHHHHH
Confidence 488999999999999999999999999999988777764321 12457899999999987 589999999999999
Q ss_pred hcCCEEEEeCCCCC---CCCCCCceeeccccCeEEEecCCcEeEEEEEeecCCCcceEeC
Q psy3769 918 LQGYYLKISINDFP---KLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGIKLL 974 (974)
Q Consensus 918 L~g~~l~v~~~~lp---~ll~e~e~y~~DLiG~~V~d~~g~~lG~V~~v~~~ga~dv~~~ 974 (974)
|+|++||++++++| +| ++|||||+|||||+|+| +|+.||+|++|+++|+||+|++
T Consensus 81 l~g~~l~i~~~~l~~lp~l-~edEyY~~dLiGl~V~~-~g~~lG~V~~v~~~ga~dvlvV 138 (184)
T PRK14593 81 LTNLGLFMSEAESKKLCVL-KEGEFFYCDLVGLSVVE-ENEILGKVIEIQRISQTDYFMV 138 (184)
T ss_pred hcCCEEEEEHHHccccCCC-CCCcEEeehccCcEEEE-CCEEeEEEEEEccCCCceEEEE
Confidence 99999999999977 76 99999999999999998 5899999999999999999974
No 35
>PRK13829 rimM 16S rRNA-processing protein RimM; Provisional
Probab=99.95 E-value=1.2e-27 Score=241.40 Aligned_cols=122 Identities=20% Similarity=0.306 Sum_probs=113.0
Q ss_pred hhhhhhhcccccccceeEEEEeecCchhhhccCCEEEEEcCCCCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCC
Q psy3769 842 HLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGY 921 (974)
Q Consensus 842 ~ll~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~~~v~l~~~~~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~L~g~ 921 (974)
+++.+|+|.++||+|||||++ |+|+ |...+++|+..+ + .++++++|.|++.++++|+||+|||+|++|+|+
T Consensus 2 ~~i~iG~I~~~hGikGevkv~---d~p~-~~~~~~~~~~~~-~----~~~v~~~r~~~~~~l~~f~gi~~r~~Ae~l~g~ 72 (162)
T PRK13829 2 RRTEIGRFGGPYGVQGGLKFR---GEPV-VLDLPRVYVEGL-G----WRAIERAERVGPELVLHLAGVTSREGAEALVGL 72 (162)
T ss_pred CEEEEEEEeCCeeecEEEEEe---cchH-hccCCEEEEcCC-C----EEEEEEEEEECCEEEEEECCCCCHHHHHHhcCC
Confidence 678899999999999999999 8889 888888887532 1 358999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCceeeccccCeEEEecCCcEeEEEEEeecCCCcceEeC
Q psy3769 922 YLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGIKLL 974 (974)
Q Consensus 922 ~l~v~~~~lp~ll~e~e~y~~DLiG~~V~d~~g~~lG~V~~v~~~ga~dv~~~ 974 (974)
+||++++++|+| ++|||||+|||||+|+ ++|+.+|+|++|+++|+||+|++
T Consensus 73 ~l~v~~~~lp~L-~e~EyY~~dLiG~~V~-~~g~~lG~V~~v~~~ga~dvlvV 123 (162)
T PRK13829 73 RVYADDADLPPL-EEGSYYYHELRGLPVY-VDGEPLGEVVDVEDAGAQDLLVI 123 (162)
T ss_pred EEEEEHHHCCCC-CCCCEEehhccCeEEE-ECCEeeEEEEEEecCCCceEEEE
Confidence 999999999997 9999999999999999 89999999999999999999975
No 36
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=99.93 E-value=1e-25 Score=227.25 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=107.2
Q ss_pred cceeEEEEeecCchhhhccCCEEEEEcCCCCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCEEEEeCCCCCCCC
Q psy3769 855 IFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLL 934 (974)
Q Consensus 855 l~Gevkv~~~td~~~~f~~~~~v~l~~~~~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~L~g~~l~v~~~~lp~ll 934 (974)
+||||||+|+||+|++|.....+|+. ++ .++++|+++|.|++.++++|+||+|||+|++|+|+++|++++++|++
T Consensus 1 ikGevkv~~~td~p~~~~~~~~~~~~--~~--~~~~~v~~~r~~~~~~lv~f~gi~dr~~Ae~L~g~~l~i~~~~lp~l- 75 (161)
T PRK13828 1 VRGEVRLKSFTEDPLAIADYGPLTTE--DG--ARSFTVALARPAKDGLVARLKGVATREAAEALRGLELYVPRDRLPEL- 75 (161)
T ss_pred CcEEEEEEEcCCCHHHhccCCeEEEC--CC--CEEEEEEEEEEECCEEEEEECCCCCHHHHHHhcCCEEEEEHHHCCCC-
Confidence 68999999999999999988877753 22 35899999999999999999999999999999999999999999997
Q ss_pred CCCceeeccccCeEEEecCCcEeEEEEEeecCCCcceEeC
Q psy3769 935 SSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKLTGIKLL 974 (974)
Q Consensus 935 ~e~e~y~~DLiG~~V~d~~g~~lG~V~~v~~~ga~dv~~~ 974 (974)
++|||||+|||||+|+|++|+.||+|++|+++|+||++++
T Consensus 76 ~e~e~y~~dLiG~~V~d~~g~~lG~V~~V~~~ga~dvlvV 115 (161)
T PRK13828 76 DDDEFYHADLIGLAAVDTGGALLGRVKAVHNFGAGDILEI 115 (161)
T ss_pred CCCCEEhhhccCCEEEeCCCCEEEEEEEEccCCCccEEEE
Confidence 9999999999999999999999999999999999999975
No 37
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=99.90 E-value=3.2e-24 Score=185.02 Aligned_cols=62 Identities=45% Similarity=0.760 Sum_probs=58.9
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhh
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll 844 (974)
.|||||||+|+|++|||||||+||+|||++++.++.+.||.||++|||++|||||+||.+|+
T Consensus 14 ~P~YrIVv~d~r~~RdGk~iE~lG~ydP~~~~~~~~i~ln~eri~~Wl~~GAqpt~~V~~Ll 75 (75)
T PRK00040 14 RPFYRIVVADSRSPRDGRFIERVGFYNPLAKPAEEEVKLDEERVLYWLGQGAQPTDTVRRLL 75 (75)
T ss_pred CCeEEEEEEecCCCCCCCceeEEeecCCCCCCCcceEEEcHHHHHHHHHCCCccCHHHHHhC
Confidence 48999999999999999999999999999987777999999999999999999999999875
No 38
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=99.90 E-value=3.7e-24 Score=186.09 Aligned_cols=65 Identities=38% Similarity=0.715 Sum_probs=60.8
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhhhhhhc
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVV 849 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~ig~i 849 (974)
.|||||||+|+|++|||||||+||+|||++++ +.+.||.||++|||++|||||+||.+||+++++
T Consensus 13 ~PfYrIVv~d~r~~RdGk~iE~lG~YnP~~~~--~~i~l~~~ri~~Wl~~GAqps~tV~~Ll~~~g~ 77 (78)
T TIGR00002 13 RPFYRIVVADSRSRRDGRYIEELGFYNPLTKE--SRVKLNVERIKYWLSKGAQPTDTVRNLLKKAGV 77 (78)
T ss_pred CCeEEEEEEecCCCCCCCceeEeeeccCCCCC--cEEEEcHHHHHHHHHCCCccCHHHHHHHHHccC
Confidence 48999999999999999999999999999885 489999999999999999999999999988654
No 39
>CHL00005 rps16 ribosomal protein S16
Probab=99.89 E-value=4.3e-24 Score=186.66 Aligned_cols=67 Identities=25% Similarity=0.497 Sum_probs=61.5
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhhhhhhccccc
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAY 853 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~ig~i~~~~ 853 (974)
.|||||||+|+|++|||||||+||+|||+++ .++||.||++|||++|||||+||.+||+++.+...|
T Consensus 14 ~P~YrIVvadsr~~RdGk~iE~lG~YnP~~~----~~~ln~eri~~Wl~~GAqpt~tV~~Ll~~~g~~~~~ 80 (82)
T CHL00005 14 QAVYRIVAIDVRSRREGRDLEKVGFYDPIKN----QTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKEL 80 (82)
T ss_pred CCeEEEEEEeCCCCCCCcceeEeeeccCCCc----ccEEeHHHHHHHHHCcCccCHHHHHHHHHcCchhhh
Confidence 4899999999999999999999999999975 579999999999999999999999999987765543
No 40
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.6e-24 Score=186.01 Aligned_cols=65 Identities=43% Similarity=0.670 Sum_probs=60.1
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhhhhhh
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGV 848 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~ig~ 848 (974)
.|||||||+|||+||||||||+||+|||+. +.++.++||.||+.|||++|||||+||++|++.+.
T Consensus 14 ~P~YrIVVaDsrs~RDGr~IE~lG~ynP~~-~~~~~v~l~~eri~~Wl~~GAqpSdtV~~ll~~~g 78 (87)
T COG0228 14 RPFYRIVVADSRSPRDGRFIERLGTYNPLL-GKEERVKLDEERILYWLSQGAQPSDTVRRLLKKAG 78 (87)
T ss_pred CCeEEEEEeccCCCCCCcchhhhcccCCCC-CccceEEEcHHHHHHHHHcCCcccHHHHHHHHHhh
Confidence 489999999999999999999999999987 44568999999999999999999999999998853
No 41
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=99.89 E-value=6.2e-24 Score=190.45 Aligned_cols=67 Identities=33% Similarity=0.541 Sum_probs=62.3
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhhhhhhccc
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLR 851 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~ig~i~~ 851 (974)
.|||||||+|||++|||||||+||+|||++++. .++||.||++|||++|||||+||.+||+.+.+..
T Consensus 14 rPfYrIVvadsr~~RdGk~iE~lG~YnP~~~~~--~i~l~~eri~~Wl~~GAqpT~tV~~Llkk~g~~~ 80 (94)
T PRK14524 14 QPFYRIVVVDSRKRRDGAYIESLGYYNPLKEPY--EIKVDVERAVEWILKGAQPSDTVRDILRKFGVMK 80 (94)
T ss_pred CCeEEEEEEecCCCCCCCceeEeeecCCCCCCc--eEEEcHHHHHHHHHcCCccCHHHHHHHHHccchh
Confidence 489999999999999999999999999998754 8999999999999999999999999999976644
No 42
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=99.89 E-value=9.2e-24 Score=186.76 Aligned_cols=66 Identities=32% Similarity=0.599 Sum_probs=61.5
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhhhhhhcc
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVL 850 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~ig~i~ 850 (974)
.|||||||+|+|++|||||||+||+|||+.++ +.++||.||++|||++|||||+||.+||+++++.
T Consensus 15 ~P~YrIVv~dsr~~RdGk~IE~lG~YnP~~~~--~~i~ln~eri~~WL~~GAqpT~tV~~Ll~~~g~~ 80 (88)
T PRK14525 15 APFYHVVATDSRNARDGKYLEDVGIYDPTKRP--ERIELKVERIEHWLKAGAKPSQTVAMILKRAAKA 80 (88)
T ss_pred CCeEEEEEeecCCCCCCCceeEEecccCCCCC--ceEEEcHHHHHHHHHCCCccCHHHHHHHHHcCcc
Confidence 48999999999999999999999999999875 4899999999999999999999999999986664
No 43
>PRK14523 rpsP 30S ribosomal protein S16; Provisional
Probab=99.89 E-value=7.3e-24 Score=198.79 Aligned_cols=78 Identities=35% Similarity=0.558 Sum_probs=72.8
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhhhhhhcccccccceeEE
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWIL 860 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~ig~i~~~~Gl~Gevk 860 (974)
.|||||||+|+|++|||||||+||+|||++++.++.+.||.+|++|||++|||||+||.+||++......+.++|.+.
T Consensus 14 rPfYRIVVaDsRs~RDGK~IE~LG~YdP~~~~~~~~i~Ln~eRi~yWL~~GAQPS~tV~~LLkkag~~~~~~~~~g~~ 91 (137)
T PRK14523 14 NPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDIRLQLEKERISHWLNQGAQTSLRVKHLIKKLEKSPEEAQKGGMR 91 (137)
T ss_pred CCeEEEEEEecCCCCCCCceeeeeecCCCCCCCCceEEECHHHHHHHHHCCCccCHHHHHHHHHcccchHHHHhcccc
Confidence 489999999999999999999999999998876678999999999999999999999999999988999899998543
No 44
>KOG3419|consensus
Probab=99.88 E-value=1.4e-23 Score=186.53 Aligned_cols=70 Identities=34% Similarity=0.580 Sum_probs=64.9
Q ss_pred EEEEEEEecccCCCCCcceeeceeecCCCcCc-ccceEeeHHHHHHhHhcCcccCcchhhhhhhhhccccc
Q psy3769 784 LHISLPATDSRNSRDGRFIERIGFYNPLASKK-EKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAY 853 (974)
Q Consensus 784 ~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~-~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~ig~i~~~~ 853 (974)
|||||||+|+|++||||+||+||+|||+|+.+ ++.+.||+||++|||++|||||+||++|+.++.+...|
T Consensus 16 PfY~Ivva~~r~~rdgk~iE~lG~ydPlp~~~~~~~v~Ln~dRikyWl~~GAqpS~tv~~Ll~~aGl~p~~ 86 (112)
T KOG3419|consen 16 PFYRIVVADSRKRRDGKPIEQLGTYDPLPNQDNEKLVALNFDRIKYWLGVGAQPSDTVEELLGKAGLFPIH 86 (112)
T ss_pred CeeEEEEeeccccccCCchhheecccCCCCCCCCcceeecHHHHHHHHhcCCccChHHHHHHHhcCCCCCc
Confidence 89999999999999999999999999999776 77899999999999999999999999999877766644
No 45
>PRK14013 hypothetical protein; Provisional
Probab=99.88 E-value=9.9e-23 Score=220.41 Aligned_cols=177 Identities=14% Similarity=0.232 Sum_probs=149.9
Q ss_pred eeeehhhhcChhHHHHHHHHcccCCccccceEEEehhHHHH-HHHHHHHHHHHHHHHH----------------------
Q psy3769 586 QIILIDILLGSTDAIIIALACRNLQPNIRTKGIIFGTFGAI-AIRIILVIFSINLLNL---------------------- 642 (974)
Q Consensus 586 ~li~le~~Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~-~~R~~~~~~~~~ll~~---------------------- 642 (974)
.+..+|.+||.||+++.+..++++|+++|++.+.||+..|+ .||++|.+.++|+...
T Consensus 34 ~L~vLEisLsfDNaIvnA~vl~~m~~~wq~~fl~~Gi~iAvFgmRlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~ 113 (338)
T PRK14013 34 ILAVLEISLSFDNAVVNATVLKRMSPKWQKRFLTWGILIAVFGMRLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILT 113 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHh
Confidence 45588999999999999999999999999999999999998 8999999999988741
Q ss_pred ---HHHHHHHHHHHHHHHHHhhcccCCc-c-----c------------------------------c-------------
Q psy3769 643 ---KYIKIIGGFLLFWISIKLLSNDHNY-T-----T------------------------------I------------- 670 (974)
Q Consensus 643 ---~~~~~~gg~~Ll~~~~~~~~~~~~~-~-----~------------------------------~------------- 670 (974)
|.+..+||.||+....+.+.+++.+ + + .
T Consensus 114 ~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~Wl~~iE~~~~~~g~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~a~~~G~ 193 (338)
T PRK14013 114 DAHPQIAAFGGTFLLMVFLNFFFDEEKDVHWLGWIERPLAKLGKLDGISVIVALVLLLIFSLLLPADEALTVLIAGLLGL 193 (338)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHhcCccchHHHHHHHHHHHHHHHcccchhhHHHHHHHHHH
Confidence 2578999999999999988854321 0 0 0
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHH
Q psy3769 671 ----------------------ASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFG 728 (974)
Q Consensus 671 ----------------------~~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~ 728 (974)
...++-+..++.||++|++||+|||+|++|+|+ |++++++|++++++++|++
T Consensus 194 ~~y~~v~~~~~~~~~~~~~~~~~~~k~g~~~fl~lE~~D~~FS~DsV~aafAiT~------d~~II~~g~~igil~lRsl 267 (338)
T PRK14013 194 LTYLIVEGLGGLFEEEEEDAMTAVGKAGLGGFLYLEVLDASFSFDGVIGAFAITN------DIFIIALGLGIGAMFVRSL 267 (338)
T ss_pred HHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHhccchhheeecC------cHHHHHHHHHHHHHHHHHH
Confidence 001234577899999999999999999999999 6999999999999999999
Q ss_pred --HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhccc-chhhHh
Q psy3769 729 --SKLVLILIEKFSSIIILCSILLGYLSGNMIFSDQ-SLTQLQ 768 (974)
Q Consensus 729 --~~~~~~~~~~~~~l~~~~~~~l~~ig~~l~~~~~-~~~~~~ 768 (974)
+++..+.++|||||++.++.+++++|+||+++.. +++++.
T Consensus 268 t~yfv~~g~L~~f~yLe~ga~~~I~~lgvkmll~~~~~IPe~v 310 (338)
T PRK14013 268 TIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLSIGVHIPEVI 310 (338)
T ss_pred HHHHHHHHHHHHhHhhhccHHHHHHHHHHHHHHhcCcCCcHHH
Confidence 6666667999999999999999999999999732 344433
No 46
>PRK14520 rpsP 30S ribosomal protein S16; Provisional
Probab=99.87 E-value=3.9e-23 Score=199.79 Aligned_cols=73 Identities=34% Similarity=0.487 Sum_probs=65.6
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhhhhhh-cccccccce
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGV-VLRAYGIFG 857 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~ig~-i~~~~Gl~G 857 (974)
.|||||||+|+|++|||||||+||+|||++++. .|.||.||++|||++|||||+||.+||++.+ +.+.+|..|
T Consensus 15 ~PfYrIVVaDsR~~RDGk~IE~lG~YnP~~~~~--~i~ln~eRi~yWL~~GAQPT~~V~~LLk~~g~~~~~~~~~~ 88 (155)
T PRK14520 15 NPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPS--LIEIDSERAQYWLSVGAQPTEPVLALLKITGDWQKFKGLPG 88 (155)
T ss_pred CCeEEEEEeecCCCCCCCceeeeeccCCCCCCc--eEEEcHHHHHHHHHCCCccCHHHHHHHHHcchhhhcccccc
Confidence 489999999999999999999999999998864 8999999999999999999999999999955 445566554
No 47
>PRK14521 rpsP 30S ribosomal protein S16; Provisional
Probab=99.87 E-value=8.1e-23 Score=203.15 Aligned_cols=77 Identities=31% Similarity=0.515 Sum_probs=68.5
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhhhhhhcccccccceeEEE
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWILI 861 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~ig~i~~~~Gl~Gevkv 861 (974)
.|||||||+|+|++|||||||+||+|||++++. .|.||.+|++|||++|||||+||.+||...++...+.+++.++-
T Consensus 15 rPfYrIVVaDsR~~RDGk~IE~lG~YnP~~~~~--~i~Ln~eRi~~WL~~GAqPTdtV~~lL~~~g~~~k~~~~~~~~k 91 (186)
T PRK14521 15 KAFYWIVAADSRAPRDGKFIEKIGTYNPNTNPA--TVDLNFDRAVYWLMNGAQPTDTARNILSYEGVLLKKHLLGGVAK 91 (186)
T ss_pred CCeEEEEEEeCCCCCCCCceeeeeecCCCCCCc--eEEEcHHHHHHHHHCCCcCCHHHHHHHHHcccchhhhhhcccCC
Confidence 489999999999999999999999999998865 89999999999999999999999999999777765555555444
No 48
>PRK14522 rpsP 30S ribosomal protein S16; Provisional
Probab=99.86 E-value=1.7e-22 Score=184.85 Aligned_cols=61 Identities=26% Similarity=0.596 Sum_probs=58.4
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEeeHHHHHHhHhcCcccCcchhhhhhh
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITI 846 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~~~~~~~~wl~~ga~~s~tv~~ll~i 846 (974)
.|||||||+|+|++|||+|||+||+|||+.++ .++||.||++|||++|||||+||.+||+.
T Consensus 15 rPfYrIVVaDsR~~RDGk~IE~lG~YdP~~~~---~v~Ln~eRi~yWL~~GAqPS~tV~~LLkk 75 (116)
T PRK14522 15 HVVYRLVLADVESPRDGKYIELLGWYDPHSEQ---NYQLKSERIFYWLNQGAELTEKAGALVKQ 75 (116)
T ss_pred CCeEEEEEeecCCCCCCCcceeeeccCCCCCC---ceEECHHHHHHHHHCCCccCHHHHHHHHh
Confidence 48999999999999999999999999999863 79999999999999999999999999998
No 49
>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....
Probab=99.84 E-value=2.2e-21 Score=162.46 Aligned_cols=55 Identities=38% Similarity=0.817 Sum_probs=52.2
Q ss_pred eEEEEEEEecccCCCCCcceeeceeecCCCcCc-ccceEeeHHHHHHhHhcCcccC
Q psy3769 783 ELHISLPATDSRNSRDGRFIERIGFYNPLASKK-EKKFKILLNRFTYWKQVGAKTS 837 (974)
Q Consensus 783 ~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~-~~~~~~~~~~~~~wl~~ga~~s 837 (974)
.|||||||+|+|++||||+||+||+|||++++. ++.+.||.||++|||++|||||
T Consensus 7 ~P~YrIVv~d~r~~RdGk~iE~lG~YdP~~~~~~~~~~~l~~eri~~Wl~~GAqpT 62 (62)
T PF00886_consen 7 RPFYRIVVADSRSPRDGKFIEELGFYDPIPNPDEEKQIKLNFERIKYWLSKGAQPT 62 (62)
T ss_dssp EEEEEEEEEETTSSTTSSESEEEEEEETTSSSSSSTSEEETHHHHHHHHHTTEEEE
T ss_pred CCeEEEEEEeCCcccccchhhccceEcCCCCCCCceeEEeCHHHHHHHHHcCcCCC
Confidence 599999999999999999999999999999865 5789999999999999999997
No 50
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=99.83 E-value=5.2e-21 Score=182.88 Aligned_cols=109 Identities=22% Similarity=0.315 Sum_probs=87.6
Q ss_pred ccc---ccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHH
Q psy3769 323 IFG---ITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI 399 (974)
Q Consensus 323 i~G---~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~ 399 (974)
++| .++++|+.++++|++.||+ ||||||++ +++.|++||+|++|.|+ ++|++++++|++.+++++++|.
T Consensus 5 VvGaS~~~~~~g~~v~~~l~~~G~~----v~~Vnp~~--~~i~G~~~y~sl~e~p~--~iDlavv~~~~~~~~~~v~~~~ 76 (116)
T PF13380_consen 5 VVGASDNPGKFGYRVLRNLKAAGYE----VYPVNPKG--GEILGIKCYPSLAEIPE--PIDLAVVCVPPDKVPEIVDEAA 76 (116)
T ss_dssp EET--SSTTSHHHHHHHHHHHTT-E----EEEESTTC--SEETTEE-BSSGGGCSS--T-SEEEE-S-HHHHHHHHHHHH
T ss_pred EEcccCCCCChHHHHHHHHHhCCCE----EEEECCCc--eEECcEEeeccccCCCC--CCCEEEEEcCHHHHHHHHHHHH
Confidence 357 4577999999999998875 99999998 99999999999999877 9999999999999999999999
Q ss_pred HcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcccccc
Q psy3769 400 ESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVP 445 (974)
Q Consensus 400 ~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~ 445 (974)
++|+|. +|+++| +.++++.++|+ ++|++++||||+|+++|
T Consensus 77 ~~g~~~-v~~~~g---~~~~~~~~~a~--~~gi~vigp~C~gv~~~ 116 (116)
T PF13380_consen 77 ALGVKA-VWLQPG---AESEELIEAAR--EAGIRVIGPNCLGVVNP 116 (116)
T ss_dssp HHT-SE-EEE-TT---S--HHHHHHHH--HTT-EEEESS-HHHHHT
T ss_pred HcCCCE-EEEEcc---hHHHHHHHHHH--HcCCEEEeCCcceEEcC
Confidence 999998 555555 34456789999 99999999999999875
No 51
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=99.72 E-value=7.6e-18 Score=159.99 Aligned_cols=124 Identities=14% Similarity=0.180 Sum_probs=106.0
Q ss_pred HHHHhhcCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEe
Q psy3769 307 FKIMMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYV 386 (974)
Q Consensus 307 ~~~il~~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~v 386 (974)
++-+|.+.++.++ |.+.-.|.|.++++.++|++.||+ |+||||++.|++++|.+||+||+|+|+ ++|++.+++
T Consensus 9 i~~iL~~~K~IAv-VG~S~~P~r~sy~V~kyL~~~GY~----ViPVNP~~~~~eiLG~k~y~sL~dIpe--~IDiVdvFR 81 (140)
T COG1832 9 IAEILKSAKTIAV-VGASDKPDRPSYRVAKYLQQKGYR----VIPVNPKLAGEEILGEKVYPSLADIPE--PIDIVDVFR 81 (140)
T ss_pred HHHHHHhCceEEE-EecCCCCCccHHHHHHHHHHCCCE----EEeeCcccchHHhcCchhhhcHHhCCC--CCcEEEEec
Confidence 3445556666665 233337788999999999999997 999999887789999999999999998 999999999
Q ss_pred cchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcccc
Q psy3769 387 PAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLI 443 (974)
Q Consensus 387 p~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~ 443 (974)
|++.++++++|+++.|+| ++|+|.|...++.. +.++ ++|+.++...|+.+=
T Consensus 82 ~~e~~~~i~~eal~~~~k-v~W~QlGi~n~ea~---~~~~--~aG~~vV~nrCi~~E 132 (140)
T COG1832 82 RSEAAPEVAREALEKGAK-VVWLQLGIRNEEAA---EKAR--DAGLDVVMDRCIMIE 132 (140)
T ss_pred ChhhhHHHHHHHHhhCCC-eEEEecCcCCHHHH---HHHH--HhCcHHHHHhhHHHH
Confidence 999999999999999988 49999999876654 6777 889999999998653
No 52
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=99.72 E-value=2.2e-17 Score=148.85 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=73.7
Q ss_pred hhhhcccccccceeEEEEeecCchhhhccCCEEEEEcCCCCceEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCEEE
Q psy3769 845 TIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLK 924 (974)
Q Consensus 845 ~ig~i~~~~Gl~Gevkv~~~td~~~~f~~~~~v~l~~~~~~~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~L~g~~l~ 924 (974)
.+|+|.++||++||||++++||+|+.|...+++|+...+ +.+++++|+++|.|++.++++|+||+|||+|++|+|++||
T Consensus 1 ~vG~I~~~hGlkG~vkv~~~td~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~i~~~~gi~~r~~Ae~l~g~~l~ 79 (84)
T PF01782_consen 1 VVGRIGKPHGLKGEVKVRPFTDFPERLFNLKQVYLEKRN-GEWRPLKVESVRPHGKSLIVKFEGIDDREAAEALRGCELY 79 (84)
T ss_dssp EEEEEEEEETTTTEEEEEE-SSSGGGGGGSSCEEEE-ET-TEEEEEEEEEEEEETTEEEEEETT--SHHHHHTTTT-EEE
T ss_pred CEEEECCCEecCEEEEEEEecCCHHHHcCCCeEEEEEcC-CceEEEEEEEEEEeCCEEEEEEcCCCCHHHHHhhCCCEEE
Confidence 379999999999999999999999999999999998433 4688999999999999999999999999999999999999
Q ss_pred EeCCC
Q psy3769 925 ISIND 929 (974)
Q Consensus 925 v~~~~ 929 (974)
+++++
T Consensus 80 v~r~~ 84 (84)
T PF01782_consen 80 VPRDD 84 (84)
T ss_dssp EEGCG
T ss_pred EECCC
Confidence 99985
No 53
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.38 E-value=1.5e-11 Score=126.97 Aligned_cols=174 Identities=21% Similarity=0.306 Sum_probs=116.6
Q ss_pred HHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcE-EEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccc
Q psy3769 7 QGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSW-VIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQ 85 (974)
Q Consensus 7 ~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~Pv-VvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q 85 (974)
=||++|++|||||+++..+++.++|.++.++.+ +|+ |||++-+++|| ||.+++|.+|+.+++++++....
T Consensus 5 faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~-~p~~ViKadGla~GK----GV~i~~~~~eA~~~l~~~~~~~~---- 75 (194)
T PF01071_consen 5 FAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQG-YPYVVIKADGLAAGK----GVVIADDREEALEALREIFVDRK---- 75 (194)
T ss_dssp HHHHHHHHTT-SB--EEEESSHHHHHHHHHHHS-SSEEEEEESSSCTTT----SEEEESSHHHHHHHHHHHHTSST----
T ss_pred HHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcC-CCceEEccCCCCCCC----EEEEeCCHHHHHHHHHHhccccc----
Confidence 489999999999999999999999999999998 788 99999999887 89999999999999999987433
Q ss_pred cCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeecc------------CCCCcceeeccccCCcceEEEEeCCCC
Q psy3769 86 TNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGS------------NKGGMDIEIISKNSPELLYKTIIDPLI 153 (974)
Q Consensus 86 ~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s------------~~GGv~iE~~~d~~p~~i~~~~i~p~~ 153 (974)
.|..-++|+|||++. |.|+.+.+..|.....|+..+- ..|||- .+.|..
T Consensus 76 ---fg~~~~~vvIEE~l~-G~E~S~~a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMG---------------a~sp~p 136 (194)
T PF01071_consen 76 ---FGDAGSKVVIEEFLE-GEEVSLFALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMG---------------AYSPVP 136 (194)
T ss_dssp ---TCCCGSSEEEEE----SEEEEEEEEEESSEEEEEEEBEEEEEEETTTEEEEESESE---------------EEESTT
T ss_pred ---cCCCCCcEEEEeccC-CeEEEEEEEEcCCeEEECcchhccccccCCCCCCCCCCcc---------------ceeecc
Confidence 444457899999998 9999999999977665533221 123332 122322
Q ss_pred CCCHHHHHHHHHHCCCChhhHHHHHHHHHHHHhhcccC-CeeEEeeceeEEccCCcEEEEEEEEeeeCc
Q psy3769 154 GLTKNNIDNISKKISIPKNSLINFYEEIQNIYKSYWET-DSLLLEINPLVINSKNKIISLDIKFNFDTN 221 (974)
Q Consensus 154 gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~-d~~~lEINPL~v~~~g~~~alDaki~ldd~ 221 (974)
.++....+++.+.+ +..++..|.+-=..+ ++..+. +++|.+| +.++.-.+++.|.
T Consensus 137 ~~~~~~~~~i~~~I---------~~pt~~~l~~eg~~y~GvLy~g---lMlt~~G-p~vlEfN~RfGDP 192 (194)
T PF01071_consen 137 FITDELLEEIIEEI---------LEPTLKGLKKEGIPYRGVLYAG---LMLTEDG-PKVLEFNVRFGDP 192 (194)
T ss_dssp TS-HHHHHHHHHHT---------HHHHHHHHHHTT---EEEEEEE---EEEETTE-EEEEEEESSGSTT
T ss_pred cCCHHHHHHHHHHH---------HHHHHHHHHhcCCCcceeeeee---eEEeCCC-cEEEEEeCCCCCC
Confidence 24444433332211 223333333311111 255555 8888888 8888887777663
No 54
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.29 E-value=4e-13 Score=140.05 Aligned_cols=175 Identities=14% Similarity=0.253 Sum_probs=146.8
Q ss_pred eehhhhcChhHHHHHHHHcccCCccccceEEEehhHHHHH-HHHHHHHHHHHHHH-------------------------
Q psy3769 588 ILIDILLGSTDAIIIALACRNLQPNIRTKGIIFGTFGAIA-IRIILVIFSINLLN------------------------- 641 (974)
Q Consensus 588 i~le~~Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~-~R~~~~~~~~~ll~------------------------- 641 (974)
-.+|.+||.||+++.|-..++..+.+|++.+.||+.-|+. ||++|...+++.-.
T Consensus 43 avLEiSLSFDNAIvNA~iLk~MS~~Wqk~FLT~GIlIAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~a 122 (346)
T COG2899 43 AVLEISLSFDNAIVNAAILKDMSPFWQKRFLTWGILIAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDA 122 (346)
T ss_pred HHhhhheechHHHhhHHHHHhccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhc
Confidence 3789999999999999999999999999999999999998 99999999986641
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-Ccc------------------------------------cccC------------
Q psy3769 642 LKYIKIIGGFLLFWISIKLLSNDH-NYT------------------------------------TIAS------------ 672 (974)
Q Consensus 642 ~~~~~~~gg~~Ll~~~~~~~~~~~-~~~------------------------------------~~~~------------ 672 (974)
.|.+-.+||.||+-...+.+.+++ +.+ +...
T Consensus 123 H~~IAAFGG~FLlMv~L~fffd~erd~hWl~~iE~~~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~Gll 202 (346)
T COG2899 123 HPQIAAFGGTFLLMVFLDFFFDHERDVHWLKWIERPLARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLL 202 (346)
T ss_pred CchhhhhhhHHHHHHHHHHhcCccccchhhhhHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcCccccceehHHHHHHHH
Confidence 225779999999999999887743 210 0000
Q ss_pred ----------------------CCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHH
Q psy3769 673 ----------------------GKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSK 730 (974)
Q Consensus 673 ----------------------~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~ 730 (974)
.+.-..+.+..|+.|..||+|.|+.++|+|+ |+++|.+|+.++.+.+|++.-
T Consensus 203 tyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVLDAsFSFDGViGAFAiT~------d~vIIalGLgIGAmfVRSiTi 276 (346)
T COG2899 203 TYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVLDASFSFDGVIGAFAITT------DPVIIALGLGIGAMFVRSITI 276 (346)
T ss_pred HHHHHHHhhhHhhcCHHHHhhhhhcchhHHHHHHHHhhhccccceeeeeeecc------CchhheeccchhheeeeeeEE
Confidence 0134567889999999999999999999999 599999999999999999988
Q ss_pred HHHH--HHHhhhhHHHHHHHHHHHHHHHhhhcc--cchhhHh
Q psy3769 731 LVLI--LIEKFSSIIILCSILLGYLSGNMIFSD--QSLTQLQ 768 (974)
Q Consensus 731 ~~~~--~~~~~~~l~~~~~~~l~~ig~~l~~~~--~~~~~~~ 768 (974)
.+.+ .+++|.||++.+..-++..++-|+++- .++++..
T Consensus 277 ~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~~~~hIpEvv 318 (346)
T COG2899 277 YLVEKGTLDEYVYLEHGAHYAIGALAVIMLLSTDRFHIPEVV 318 (346)
T ss_pred EEEecCcHHHHHHHhcchHHHHHHHHHHHHHhhhheehHHHH
Confidence 8854 999999999999999999999999976 3444444
No 55
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=99.27 E-value=8.3e-13 Score=140.47 Aligned_cols=168 Identities=13% Similarity=0.231 Sum_probs=141.9
Q ss_pred hhHHHHHHHHcccCCccccceEEEehhHHHHH-HHHHHHHHHHHHHH-------------------------HHHHHHHH
Q psy3769 596 STDAIIIALACRNLQPNIRTKGIIFGTFGAIA-IRIILVIFSINLLN-------------------------LKYIKIIG 649 (974)
Q Consensus 596 ~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~-~R~~~~~~~~~ll~-------------------------~~~~~~~g 649 (974)
.||+++.|-..++..+.+||+-+.||+.-|+. ||++|.+++++... .|.+..+|
T Consensus 1 FDNAVVNA~vLk~Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~IaaFG 80 (294)
T PF04332_consen 1 FDNAVVNATVLKRMSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAAFG 80 (294)
T ss_pred CCchhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHHHh
Confidence 39999999999999999999999999999998 99999999997652 22577999
Q ss_pred HHHHHHHHHHhhcccCCcc------------------------------------c------------------------
Q psy3769 650 GFLLFWISIKLLSNDHNYT------------------------------------T------------------------ 669 (974)
Q Consensus 650 g~~Ll~~~~~~~~~~~~~~------------------------------------~------------------------ 669 (974)
|.||+....+.+.++++.+ +
T Consensus 81 G~FLlmvfL~f~f~~~k~~Wl~~iE~~l~~~g~~~~~~~~v~l~~l~~~~~~l~~~~~~~~~~l~agi~G~~~f~~v~~l 160 (294)
T PF04332_consen 81 GMFLLMVFLDFFFDEEKVHWLRWIERPLAKLGKLDAISVVVALLALLIIAVFLAASADEAPTVLLAGILGLVTFLIVNGL 160 (294)
T ss_pred HHHHHHHHHheeecCCcceeehHHHHHHHHcCCcccchhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999988888776654310 0
Q ss_pred -----cc---------CCCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHH--
Q psy3769 670 -----IA---------SGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVL-- 733 (974)
Q Consensus 670 -----~~---------~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~-- 733 (974)
.+ ..++-+...+..|+.|..||+|.|+.|+|+|+ |+++|.+|+.++.+.+|++.-.+.
T Consensus 161 ~~~~e~~~~~~~~~~~~~k~g~~~FlYLEVLDASFSfDGVIGAFAiT~------~i~iI~iGLgIGAmfVRSlTi~lV~k 234 (294)
T PF04332_consen 161 GSLFEAEEEPTAAAVAVGKAGLSGFLYLEVLDASFSFDGVIGAFAITN------NIFIIAIGLGIGAMFVRSLTIYLVEK 234 (294)
T ss_pred HHHhccccccchhhhHHHHHHHHHHHHHHHHhhhccccceeehhhhhc------chHHHHHhcccceeeeeeeeEEeEec
Confidence 00 01235567889999999999999999999999 699999999999999999999998
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhhccc--chhhHhh
Q psy3769 734 ILIEKFSSIIILCSILLGYLSGNMIFSDQ--SLTQLQI 769 (974)
Q Consensus 734 ~~~~~~~~l~~~~~~~l~~ig~~l~~~~~--~~~~~~~ 769 (974)
..+++|+|||+.+..-++.+|+-|+++.. ++++++.
T Consensus 235 gtL~~Y~YLEhGA~yAIg~La~IMll~~~~~~iPE~vT 272 (294)
T PF04332_consen 235 GTLSEYRYLEHGAHYAIGALAVIMLLSIFGFHIPEVVT 272 (294)
T ss_pred CcHHHhHHHhcchHHHHHHHHHHHHHHhhcccchHHHH
Confidence 48999999999999999999999999865 4555543
No 56
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.15 E-value=1.4e-09 Score=122.12 Aligned_cols=101 Identities=24% Similarity=0.323 Sum_probs=90.6
Q ss_pred HHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccC
Q psy3769 8 GKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTN 87 (974)
Q Consensus 8 ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~ 87 (974)
+|++|++||||++.+..++++++|.+..++.| .|+||||+-+++|| ||+++.+.+|+.+++++|+....
T Consensus 107 aK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g-~piVVKadGLaaGK----GV~V~~~~eeA~~a~~~~l~~~~------ 175 (428)
T COG0151 107 AKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKG-APIVVKADGLAAGK----GVIVAMTLEEAEAAVDEMLEGNA------ 175 (428)
T ss_pred HHHHHHHcCCCcccccccCCHHHHHHHHHHcC-CCEEEecccccCCC----CeEEcCCHHHHHHHHHHHHhhcc------
Confidence 79999999999999999999999999999999 89999999999988 99999999999999999987644
Q ss_pred CCCCceeEEEEEEEeccceeEEEEEEEeccCCce
Q psy3769 88 QEGENVFCVLIEEYIDIKKELYISFMTDRVQQNI 121 (974)
Q Consensus 88 ~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~p 121 (974)
.|.....|+|||+++ +.|+.+-...|...-.|
T Consensus 176 -fg~~g~~VVIEEfL~-GeE~S~~a~~DG~~v~p 207 (428)
T COG0151 176 -FGSAGARVVIEEFLD-GEEFSLQAFVDGKTVIP 207 (428)
T ss_pred -ccCCCCcEEEEeccc-ceEEEEEEEEcCCeEEE
Confidence 343335799999999 89999999999766555
No 57
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.05 E-value=1e-08 Score=120.04 Aligned_cols=101 Identities=24% Similarity=0.241 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+-..+|++|+++|||||++..+++.+|+.++++++| +|+||||+-..+|| ||.+++|.+|+.+++++++....
T Consensus 102 dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g-~PvVVKp~~~~~Gk----GV~iv~~~~el~~a~~~~~~~~~-- 174 (434)
T PLN02257 102 SKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQG-APIVVKADGLAAGK----GVVVAMTLEEAYEAVDSMLVKGA-- 174 (434)
T ss_pred CHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC-CCEEEEcCCCCCCC----CEEEECCHHHHHHHHHHHHhhhh--
Confidence 346789999999999999999999999999999999 89999998666666 99999999999999998865322
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
.|.....++|||+++ +.|+.+.+..|..
T Consensus 175 -----fg~~~~~vlIEefi~-G~E~Sv~~~~dG~ 202 (434)
T PLN02257 175 -----FGSAGSEVVVEEFLD-GEEASFFALVDGE 202 (434)
T ss_pred -----ccCCCCeEEEEECCC-CCEEEEEEEECCC
Confidence 222235799999998 5699998888854
No 58
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.04 E-value=2.7e-09 Score=124.74 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+...+|++|+++|||+|++..+++.+|+.+++++++ +|+||||.-..+|| ||.+++|.+|+++++++++....
T Consensus 108 dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~-~PvVVKp~~~~~gk----GV~vv~~~eel~~a~~~~~~~~~-- 180 (426)
T PRK13789 108 SKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEM-LPIVIKADGLAAGK----GVTVATEKKMAKRALKEIFKDKK-- 180 (426)
T ss_pred CHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEECCHHHHHHHHHHHHhhcc--
Confidence 456789999999999999999999999999999998 89999997666666 89999999999999999874322
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
.|..-..++|||+++ +.|+.+.+..|..
T Consensus 181 -----~g~~~~~vlIEEfl~-G~E~Sv~~~~dg~ 208 (426)
T PRK13789 181 -----FGQSGNQVVIEEFME-GQEASIFAISDGD 208 (426)
T ss_pred -----ccCCCCeEEEEECcC-CeEEEEEEEECCC
Confidence 222224799999999 5899999988753
No 59
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.03 E-value=2.7e-09 Score=112.40 Aligned_cols=160 Identities=15% Similarity=0.204 Sum_probs=110.2
Q ss_pred HHHHcCCCCCCceeeCCHHHH----HHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccccc
Q psy3769 11 ILRKFNVTIPKGILCMNVDEA----IKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQT 86 (974)
Q Consensus 11 lL~~~GIpvp~~~~~~s~eea----~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~ 86 (974)
||+++|||||++.+++..+.. .+..+.++ +|++|||. .+ |.+=||..++|.+|++++.++.+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~-~P~~VKP~--~~--GsS~Gi~~v~~~~el~~ai~~~~~~------- 68 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLG-FPLFVKPA--SE--GSSIGISKVHNEEELEEAIEKAFKY------- 68 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHS-SSEEEEES--ST--STTTTEEEESSHHHHHHHHHHHTTT-------
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcC-CCEEEEEC--CC--CccEEEEEcCCHHHHHHHHHHHhhh-------
Confidence 689999999999999765543 34567889 99999994 22 3334899999999999998887532
Q ss_pred CCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHHH--
Q psy3769 87 NQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNIS-- 164 (974)
Q Consensus 87 ~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~~-- 164 (974)
-..+||||+++ |+|+.+|+..+.. +.++-- +|.. +..++.++++....
T Consensus 69 ------~~~vlVEefI~-G~E~tv~vl~~~~---~~~~~~------~ei~--------------~~~~~~d~~~Ky~~~~ 118 (203)
T PF07478_consen 69 ------DDDVLVEEFIS-GREFTVGVLGNGE---PRVLPP------VEIV--------------FPSEFYDYEAKYQPAD 118 (203)
T ss_dssp ------HSEEEEEE--S-SEEEEEEEEESSS---TEEEEE------EEEE--------------ESSSEEEHHHHHSGCC
T ss_pred ------cceEEEEeeec-ccceEEEEEecCC---cccCce------EEEE--------------cCCCceehhheeccCC
Confidence 14799999995 9999999998643 211110 1111 11123333333311
Q ss_pred ------HHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 165 ------KKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 165 ------~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
....+++...+++.++..++++.+...+...+| +.++++|+++.++.-
T Consensus 119 ~~~~~~~pa~l~~~~~~~i~~~a~~a~~~lg~~~~~RiD---~rv~~~g~~~~lEiN 172 (203)
T PF07478_consen 119 SETEYIIPADLSEELQEKIKEIAKKAFKALGCRGYARID---FRVDEDGKPYFLEIN 172 (203)
T ss_dssp SCEEEESS-SS-HHHHHHHHHHHHHHHHHTTTCSEEEEE---EEEETTTEEEEEEEE
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHHcCCCceeEE---EEeccCCceEEEecc
Confidence 112567788899999999999999999999999 888889988887763
No 60
>KOG1254|consensus
Probab=99.00 E-value=2.6e-09 Score=119.62 Aligned_cols=201 Identities=27% Similarity=0.437 Sum_probs=160.0
Q ss_pred cccccchhhhcccC-CCcEEEEEecchhHHHHHHHHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcc
Q psy3769 364 IPIFDTVKNAKNET-GATVSVIYVPAIFATSAIWEAIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPG 441 (974)
Q Consensus 364 ~~~y~sl~dip~~~-~vDlavi~vp~~~v~~~v~e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G 441 (974)
+|+|++..+.-.+| .+|.-+-+-.-..+.+--.++.+. .++.+-++.+|.++.+..+++..++ +.+..++||-+.|
T Consensus 55 IPv~~t~~~a~~~hp~~dv~~~faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~--~k~~~iiGPaTvg 132 (600)
T KOG1254|consen 55 IPVEKTMENALVEHPEADVEPWFASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAE--VKGVGIIGPATVG 132 (600)
T ss_pred eechhhHHHHHhcCcccceeechhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhccc--cccceEEeeeeec
Confidence 67888887665433 456665555555565555666665 5888889999999999888888888 9999999999999
Q ss_pred ccccCccccc--------cCCCCCCCCCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhC
Q psy3769 442 LIVPEEIKIG--------IMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNED 513 (974)
Q Consensus 442 ~~~~~~~~~~--------~~~~~~~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~D 513 (974)
.+.|.....+ .......+||.+++||.||++..++.+...+.-.|....+.+|++++.+.++.|.+--..+|
T Consensus 133 gVePg~fkignt~g~~dnil~~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~ 212 (600)
T KOG1254|consen 133 GVEPGVFKIGNTGGMMDNILNSKLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHD 212 (600)
T ss_pred cccCCccccCCCCcchhhhhhhcccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhcc
Confidence 9998764422 12224689999999999999999998877777899999999999999999999999999999
Q ss_pred CCccEEEEEEccCCCchHHHHHHHHh----cCCCCEEEEecccCC---CCCCCccCccccccc
Q psy3769 514 QNTDAVIMIGEIGGLDEIYAANWIKK----NMKKPVIGFIAGITA---PPGKRMGHAGALITE 569 (974)
Q Consensus 514 p~t~~I~ly~E~~g~~~~~~~~f~~~----~~~KPVv~lk~Grs~---~~g~~~sHTgalag~ 569 (974)
|.++.|++..|-.|+.|. +|+++ ...||+|++..|.++ +..-++.|.|+-|..
T Consensus 213 ~~vk~Iv~Lgevgg~~ey---~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~ 272 (600)
T KOG1254|consen 213 PLVKFIVVLGEVGGDEEY---TFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFK 272 (600)
T ss_pred ChhheEEeehhhccccee---ehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhc
Confidence 999999999998876543 45555 578999999999863 123347999988874
No 61
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.99 E-value=1.9e-08 Score=115.07 Aligned_cols=168 Identities=15% Similarity=0.235 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeec-CcccccCeEEEeCCHHHHHHHHHHHHhcccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHA-GGRGKCGGIKLAQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~-ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~ 82 (974)
+.+..|++|+++|||+|++..+++.+++.++++++| +|+|+||.... +|| ||.+++|++|++++++++..
T Consensus 98 dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g-~P~vvKp~~~g~~g~----Gv~~v~~~~el~~a~~~~~~---- 168 (352)
T TIGR01161 98 DRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELG-FPVVLKARTGGYDGR----GQYRIRNEADLPQAAKELGD---- 168 (352)
T ss_pred CHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHcC-CCEEEEeCCCCCCCC----CEEEECCHHHHHHHHHhcCC----
Confidence 456789999999999999999999999999999999 89999995321 333 89999999999988876421
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHH
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDN 162 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~ 162 (974)
..++||||++.++|+.+.+.+|.+ +... .+. . .|.. +.+.+....+.|.
T Consensus 169 -----------~~~lvEe~I~~~~E~sv~~~~~~~-G~~~-~~~-~----~~~~---~~~g~~~~~~~p~---------- 217 (352)
T TIGR01161 169 -----------RECIVEEFVPFERELSVIVARSAD-GETA-FYP-V----VENI---HQDGILRYVVAPA---------- 217 (352)
T ss_pred -----------CcEEEEecCCCCeEEEEEEEEcCC-CCEE-EEC-C----cccE---EeCCEEEEEECCC----------
Confidence 258999999988999888877753 3232 222 1 1111 1122333334442
Q ss_pred HHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEeee
Q psy3769 163 ISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFD 219 (974)
Q Consensus 163 ~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ld 219 (974)
.++++..+++.+++.++.+.+.-.++.-+| ++++++|++++++.--++-
T Consensus 218 -----~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve---~~~~~dg~~~v~EinpR~~ 266 (352)
T TIGR01161 218 -----AVPDAIQARAEEIARRLMEELGYVGVLAVE---MFVLPDGRLLINELAPRVH 266 (352)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHcCceeEEEEE---EEEeCCCcEEEEEecCCCC
Confidence 234445667777888888777655677788 7788788777666544443
No 62
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.98 E-value=2.1e-08 Score=112.27 Aligned_cols=169 Identities=15% Similarity=0.207 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+.+..|++|+++|||+|++..+.+.+++.+.++++| +|+|+||..-.+++ ||..+++.+|+.+++++....
T Consensus 98 dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~~-~P~ivKP~~g~~s~----Gv~~v~~~~el~~~~~~~~~~---- 168 (304)
T PRK01372 98 DKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLG-LPLVVKPAREGSSV----GVSKVKEEDELQAALELAFKY---- 168 (304)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEeCcchHHHHHhhcC-CCEEEeeCCCCCCC----CEEEeCCHHHHHHHHHHHHhc----
Confidence 456789999999999999999999999888899999 89999997655444 889999999999888776321
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
...++||||++ ++|+.+.+..|+.. +++-+.. .++.. ......+... +....|
T Consensus 169 ---------~~~~lvEe~i~-G~E~~v~vi~~~~~-~~~~~~~-~~~~~-~~~~~~~~g~--~~~~~p------------ 221 (304)
T PRK01372 169 ---------DDEVLVEKYIK-GRELTVAVLGGKAL-PVIEIVP-AGEFY-DYEAKYLAGG--TQYICP------------ 221 (304)
T ss_pred ---------CCcEEEEcccC-CEEEEEEEECCCcc-ceEEEEe-cCCEE-eeeccccCCC--eEEEeC------------
Confidence 14689999998 89999999877433 2322222 22210 0000000000 001111
Q ss_pred HHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 164 SKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 164 ~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
..++++..+++.+++.++++.+.-.+...+| ++++++|+++.++.
T Consensus 222 ---~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD---~~~~~~g~~~viEv 266 (304)
T PRK01372 222 ---AGLPAEIEAELQELALKAYRALGCRGWGRVD---FMLDEDGKPYLLEV 266 (304)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHhCCcceEEEE---EEEcCCCCEEEEEe
Confidence 1244556677888888999888766777888 88888888887775
No 63
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=98.98 E-value=2.3e-08 Score=105.76 Aligned_cols=174 Identities=20% Similarity=0.281 Sum_probs=119.9
Q ss_pred HHHHHHHHHcCCCCCCceee--CCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 6 YQGKEILRKFNVTIPKGILC--MNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~~--~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
..+|+++++.|+|+|++... ++.+||.++|+++| |||++||..--||| |.+++.|++|+.+++++......
T Consensus 3 ~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iG-yPVliKas~ggGG~----gm~iv~~~~eL~~~~~~~~~~s~-- 75 (211)
T PF02786_consen 3 IRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIG-YPVLIKASAGGGGR----GMRIVHNEEELEEAFERAQRESP-- 75 (211)
T ss_dssp HHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH--SSEEEEETTSSTTT----SEEEESSHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcC-CceEEeeccccccc----ccccccchhhhhhhhhhccccCc--
Confidence 46899999999999999998 99999999999999 99999996545555 88999999999999887655431
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
....-..++||+++...+|+-+=+..|+. +..+. . |..+ ....++..+. +.+.|...+
T Consensus 76 -----~~fg~~~v~iek~i~~~reiEvqvi~D~~-gn~~~-~---~~~e--~~~~~hs~ds--i~~~P~~~L-------- 133 (211)
T PF02786_consen 76 -----AAFGDGPVLIEKFIEGAREIEVQVIRDGK-GNVVH-L---GERE--CSEQRHSQDS--IEEAPAQTL-------- 133 (211)
T ss_dssp -----HHHSTS-EEEEE--SSEEEEEEEEEEETT-SEEEE-E---EEEE--EEEEETTEEE--EEEES-SSS--------
T ss_pred -----cccccceEEEeeehhhhhhhhhhhhhccc-cceee-e---eeec--cccccccccc--eeEeecccc--------
Confidence 00012578999999988999999999974 32322 2 2233 2222232332 455553333
Q ss_pred HHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEcc-CCcEEEEEEEEe
Q psy3769 164 SKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINS-KNKIISLDIKFN 217 (974)
Q Consensus 164 ~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~-~g~~~alDaki~ 217 (974)
+++..+++.+...++.+.+.=.++--+| +++++ +++++.+...-+
T Consensus 134 ------~~~~~~~l~~~a~~ia~~l~~~G~~tve---f~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 134 ------SDEERQKLREAAKKIARALGYVGAGTVE---FAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp -------HHHHHHHHHHHHHHHHHTT-EEEEEEE---EEEETTTTEEEEEEEESS
T ss_pred ------chHHHHHHHHHHHHHHHhhCeeecceEE---EEEccCccceeeecccCC
Confidence 4456677788888888887766777778 77765 677888777533
No 64
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.95 E-value=1.9e-08 Score=102.81 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=109.7
Q ss_pred HHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccCCCCC
Q psy3769 12 LRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGE 91 (974)
Q Consensus 12 L~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~ 91 (974)
|++.|||||++..+.+.+|+.++++++| +|+|+|+-. .| .++-|..++++.+++.++++.+-.
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~iG-~P~vlK~~~-~G--YDGkGq~~i~~~~dl~~a~~~~~~------------- 63 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESIG-FPAVLKTRR-GG--YDGKGQFVIRSEEDLEKAWQELGG------------- 63 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHHT-SSEEEEESS-SS--CTTTTEEEESSGGGHHHHHHHTTT-------------
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHcC-CCEEEEccC-cC--cCCCccEEECCHHHHHHHHHhcCC-------------
Confidence 6889999999999999999999999999 999999721 11 233388899999999999887611
Q ss_pred ceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHHHHHCCCCh
Q psy3769 92 NVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNISKKISIPK 171 (974)
Q Consensus 92 ~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~~~~lg~~~ 171 (974)
..+++|++++..+|+.+-+.+|.+. .. ..+. -+|.. +.+.+....+.|.. +++
T Consensus 64 --~~~ilE~~v~f~~EiSvivaR~~~G-~~-~~yp-----~~en~---~~~~il~~s~~Pa~---------------i~~ 116 (172)
T PF02222_consen 64 --GPCILEEFVPFDREISVIVARDQDG-EI-RFYP-----PVENV---HRDGILHESIAPAR---------------ISD 116 (172)
T ss_dssp --SCEEEEE---ESEEEEEEEEEETTS-EE-EEEE-----EEEEE---EETTEEEEEEESCS---------------S-H
T ss_pred --CcEEEEeccCCcEEEEEEEEEcCCC-CE-EEEc-----CceEE---EECCEEEEEECCCC---------------CCH
Confidence 2569999999999999999998643 22 2332 13433 34567778888832 344
Q ss_pred hhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCc-EEE
Q psy3769 172 NSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNK-IIS 211 (974)
Q Consensus 172 ~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~-~~a 211 (974)
...+++.++..++.+.+.-.++..+| +++++||+ +++
T Consensus 117 ~~~~~a~~ia~~i~~~l~~vGv~~VE---~Fv~~~g~~v~v 154 (172)
T PF02222_consen 117 EVEEEAKEIARKIAEALDYVGVLAVE---FFVTKDGDEVLV 154 (172)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEEEEEE---EEEETTSTEEEE
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEEE---EEEecCCCEEEE
Confidence 45667788888888887777899999 99999996 554
No 65
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.94 E-value=3.8e-08 Score=113.41 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=116.2
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeee-cCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIH-AGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~-~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
-+..|++|+++|||+|++..+++.+++.++++++| +|+|+||.-. .+|| |+.+++|.+|+.++++++.
T Consensus 101 K~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~g-~P~vlKp~~~g~~g~----Gv~~v~~~~el~~a~~~~~------ 169 (372)
T PRK06019 101 RLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLG-LPAVLKTRRGGYDGK----GQWVIRSAEDLEAAWALLG------ 169 (372)
T ss_pred HHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcC-CcEEEEeCCCCcCCC----CeEEECCHHHHHHHHHhcC------
Confidence 45679999999999999999999999999999999 9999999421 1233 8999999999999887651
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
-..++|||+++.++|+.+.+.+|.+ +.. ..+. . +|.. +.+.+....+.|.
T Consensus 170 ---------~~~~ivEe~I~~~~E~sv~~~~~~~-G~~-~~~p-~----~e~~---~~~gi~~~~~~pa----------- 219 (372)
T PRK06019 170 ---------SVPCILEEFVPFEREVSVIVARGRD-GEV-VFYP-L----VENV---HRNGILRTSIAPA----------- 219 (372)
T ss_pred ---------CCCEEEEecCCCCeEEEEEEEECCC-CCE-EEeC-C----cccE---EeCCEEEEEECCC-----------
Confidence 0357999999989999998888853 323 2222 1 1211 1123444445552
Q ss_pred HHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 164 SKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 164 ~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
.++++..+++.++..++.+.+.-.++.-+| ++++++|++++.+.-
T Consensus 220 ----~~~~~~~~~~~~~a~~i~~~L~~~G~~~vE---ff~~~dg~~~v~Ein 264 (372)
T PRK06019 220 ----RISAELQAQAEEIASRIAEELDYVGVLAVE---FFVTGDGELLVNEIA 264 (372)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHcCccceeEEE---EEEcCCCeEEEEEec
Confidence 234455667777888887777656677778 777777777665553
No 66
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.93 E-value=3.2e-08 Score=116.93 Aligned_cols=174 Identities=19% Similarity=0.237 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGI--LCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~--~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+.+..|++|+++|||+|++. .+++.+|+.++++++| ||+|+||....||+ ||.+++|++|+++++++......
T Consensus 115 DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig-~PvvvKP~~g~gs~----Gv~~v~~~~el~~~~~~~~~~~~ 189 (449)
T TIGR00514 115 DKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIG-YPVIIKATAGGGGR----GMRVVREPDELVKSISMTRAEAK 189 (449)
T ss_pred CHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----ccEEECCHHHHHHHHHHHHHHHH
Confidence 45678999999999998874 6789999999999999 99999996555555 99999999999999887654321
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
.......++||||++..+|+.+.+..|.. +..+. ++ ..+. .+...++ ++ +...|..
T Consensus 190 -------~~~~~~~vlvEe~i~g~~e~~v~v~~d~~-g~~~~-~~---~~~~-~~~~~~~-~~--~~~~p~~-------- 245 (449)
T TIGR00514 190 -------AAFGNDGVYIEKYIENPRHVEIQVLADKY-GNAIY-LG---ERDC-SIQRRHQ-KL--LEEAPSP-------- 245 (449)
T ss_pred -------HhCCCCCEEEEECCCCCeEEEEEEEEcCC-CCEEE-Ee---cccc-Cceeccc-ce--EEECCCC--------
Confidence 00112468999999978999999999863 33322 22 1110 0111111 11 1222311
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
.+++...+++.+.+.++.+.+.-.++.-+| ++++++|+++.++.-
T Consensus 246 ------~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve---f~~~~~g~~~viEiN 290 (449)
T TIGR00514 246 ------ALTPELRRKMGDAAVKAAVSIGYRGAGTVE---FLLDKNGEFYFMEMN 290 (449)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHCCCcceEEEE---EEEeCCCCEEEEEEE
Confidence 244556677788888888877666777788 777767766665543
No 67
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.91 E-value=6.5e-08 Score=111.71 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+...+|++|+++|||+|++..+++.+|+.++++++| +|+|+||.-..+|| ||.+++|.+|++++++++++...
T Consensus 67 dK~~~k~~l~~~gIptp~~~~~~~~~ea~~~~~~~g-~PvVvKp~~~~~gk----GV~iv~~~~el~~a~~~~~~~~~-- 139 (379)
T PRK13790 67 SKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCE-LPVVVKKDGLAAGK----GVIIADTIEAARSAIEIMYGDEE-- 139 (379)
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHHHHhcCC--
Confidence 356689999999999999999999999999999999 99999997655555 89999999999999998764221
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
-..++|||+++ +.|+.+.+..|..
T Consensus 140 ---------~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 140 ---------EGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred ---------CCeEEEEEccc-CceEEEEEEeeCC
Confidence 13689999998 6899999988853
No 68
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.90 E-value=4.9e-08 Score=126.14 Aligned_cols=98 Identities=27% Similarity=0.391 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccc
Q psy3769 6 YQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQ 85 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q 85 (974)
...|++|+++|||+|++..+++.+|+.++++++| ||+||||....||+ |+.+++|++|+.+++++.++..
T Consensus 130 ~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~ig-yPvVVKP~~g~gG~----Gv~iv~~~eEL~~a~~~~~~~s----- 199 (1068)
T PRK12815 130 ERFRALMKELGEPVPESEIVTSVEEALAFAEKIG-FPIIVRPAYTLGGT----GGGIAENLEELEQLFKQGLQAS----- 199 (1068)
T ss_pred HHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHcC-CCEEEEECcCCCCC----ceEEECCHHHHHHHHHHHHhcC-----
Confidence 4568999999999999999999999999999999 99999996555555 6778999999999998876532
Q ss_pred cCCCCCceeEEEEEEEeccceeEEEEEEEeccCC
Q psy3769 86 TNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQ 119 (974)
Q Consensus 86 ~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~ 119 (974)
+...++|||++++.+|+.+.+.+|++..
T Consensus 200 ------~~~~vLVEe~I~G~~E~sv~v~rD~~g~ 227 (1068)
T PRK12815 200 ------PIHQCLLEESIAGWKEIEYEVMRDRNGN 227 (1068)
T ss_pred ------CCCeEEEEEccCCCeEEEEEEEEcCCCC
Confidence 1247999999998899999999997544
No 69
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.89 E-value=6.9e-08 Score=116.71 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeec-CcccccCeEEEeCCHHHHHHHHHHHHhcccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHA-GGRGKCGGIKLAQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~-ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~ 82 (974)
+-+..|++|+++|||+|++..+++.+++.++++++| ||+|+||.-.. +|+ |+.+++|++|++++++.+.+..
T Consensus 121 DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig-~P~VvKP~~ggs~g~----Gv~~v~~~~eL~~a~~~~~~~~-- 193 (577)
T PLN02948 121 DKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFG-YPLMLKSRRLAYDGR----GNAVAKTEEDLSSAVAALGGFE-- 193 (577)
T ss_pred CHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcC-CcEEEEeCCCCCCCC----CeEEECCHHHHHHHHHHhhCCC--
Confidence 456789999999999999999999999999999999 99999994211 233 8889999999999888764211
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHH
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDN 162 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~ 162 (974)
..++||+|++..+|+.+.+.+|.+ +... .+. + +|.... +.+..+.+.|.
T Consensus 194 -----------~~vlvEefI~~~~EisV~v~r~~~-G~i~-~~p----~-~E~~~~---~~~~~~~~~Pa---------- 242 (577)
T PLN02948 194 -----------RGLYAEKWAPFVKELAVMVARSRD-GSTR-CYP----V-VETIHK---DNICHVVEAPA---------- 242 (577)
T ss_pred -----------CcEEEEecCCCCeEEEEEEEECCC-CCEE-Eec----C-cccEEE---CCeeEEEEECC----------
Confidence 257999999988999999998753 3222 221 1 233221 22333333441
Q ss_pred HHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 163 ISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 163 ~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
.++++..+++.++..++++.+...++.-+| ++++++|++++...
T Consensus 243 -----~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vE---ffv~~dG~v~v~EI 286 (577)
T PLN02948 243 -----NVPWKVAKLATDVAEKAVGSLEGAGVFGVE---LFLLKDGQILLNEV 286 (577)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHhCCCeEEEEE---EEEcCCCcEEEEEE
Confidence 245566677888888888888766777888 88888886655444
No 70
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.88 E-value=4.5e-08 Score=114.73 Aligned_cols=101 Identities=22% Similarity=0.294 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+.+..|++|+++|||+|++..+++.+++.++++++| ||+|+||....|++ ||.+++|++|+.+++++++....
T Consensus 102 dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~P~VvKP~~~~gs~----Gv~~v~~~~el~~~~~~~~~~~~-- 174 (420)
T PRK00885 102 SKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKG-APIVVKADGLAAGK----GVVVAMTLEEAKAAVDDMLAGNK-- 174 (420)
T ss_pred CHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC-CCEEEEeCCCCCCC----cEEEeCCHHHHHHHHHHHhhccc--
Confidence 346679999999999999999999999999999999 89999997555555 89999999999999998865321
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
.+..-..++|||+++ +.|+.+.+..|..
T Consensus 175 -----~~~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 175 -----FGDAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred -----ccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 122224799999998 6999999998854
No 71
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.88 E-value=4.9e-08 Score=114.44 Aligned_cols=100 Identities=23% Similarity=0.363 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCc-EEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNS-WVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~P-vVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~ 82 (974)
+-+..|++|+++|||+|++..+++.+|+.++++++| +| +|+||+...||| ||.+++|.+|+.++++++++...
T Consensus 104 dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g-~P~~VvKp~~~~gg~----Gv~~v~~~~el~~~~~~~~~~~~- 177 (423)
T TIGR00877 104 SKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKG-APAIVVKADGLAAGK----GVIVAKTNEEAIKAVEEILEQKF- 177 (423)
T ss_pred CHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcC-CCeEEEEECCCCCCC----CEEEECCHHHHHHHHHHHHHHhc-
Confidence 356789999999999999999999999999999999 89 999997666655 89999999999999998875431
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
|.....++|||+++ +.|+.+.+..|..
T Consensus 178 -------g~~~~~~lvEe~i~-G~E~sv~~~~dg~ 204 (423)
T TIGR00877 178 -------GDAGERVVIEEFLD-GEEVSLLAFVDGK 204 (423)
T ss_pred -------CCCCCeEEEEECcc-CceEEEEEEEcCC
Confidence 12235799999999 5899999998863
No 72
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.87 E-value=3.3e-08 Score=112.24 Aligned_cols=171 Identities=14% Similarity=0.142 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHH----HHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEA----IKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGM 79 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea----~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~ 79 (974)
+.+.+|++|+++|||+|++..+.+.++. .++.++++ +|+||||.-.. - +-||.++++++|+.+++++.+..
T Consensus 123 DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~~~-~P~vVKP~~~g--s--S~Gv~~v~~~~el~~a~~~~~~~ 197 (333)
T PRK01966 123 DKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKLG-LPVFVKPANLG--S--SVGISKVKNEEELAAALDLAFEY 197 (333)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEeccccchhhHHHHHHhcC-CCEEEEeCCCC--C--ccCEEEECCHHHHHHHHHHHHhc
Confidence 4577899999999999999998766542 44566788 99999994322 2 23899999999999998887532
Q ss_pred cccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHH
Q psy3769 80 QLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNN 159 (974)
Q Consensus 80 ~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~ 159 (974)
. ..++|||+++ ++|+.+++..|. +.. .. .| |..... ..+.+.-....+-
T Consensus 198 ~-------------~~vlvEefI~-G~E~~v~vl~~~--~~~-~~---~~----ei~~~~---~~~d~~~ky~~~~---- 246 (333)
T PRK01966 198 D-------------RKVLVEQGIK-GREIECAVLGND--PKA-SV---PG----EIVKPD---DFYDYEAKYLDGS---- 246 (333)
T ss_pred C-------------CcEEEEcCcC-CEEEEEEEECCC--CeE-cc---cE----EEecCC---ceEcHHHccCCCC----
Confidence 1 4689999999 799999999862 111 00 11 111100 0000000000000
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 160 IDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 160 a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
.....+..++++..+++.+++.++++.+...++..+| ++++++|+++.++.
T Consensus 247 -~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvD---f~~~~~g~~~vlEi 297 (333)
T PRK01966 247 -AELIIPADLSEELTEKIRELAIKAFKALGCSGLARVD---FFLTEDGEIYLNEI 297 (333)
T ss_pred -ceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEE---EEEcCCCCEEEEEe
Confidence 0111123467778889999999999998777888899 88888888877664
No 73
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.86 E-value=1.3e-07 Score=109.96 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=113.8
Q ss_pred HHHHHHHH-HHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 5 EYQGKEIL-RKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 5 E~~ak~lL-~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
.+..|++| +++|||+|++..+++.+|+.++++++| ||+|+||.-..+++ ||.+++|.+|++++++.+.....
T Consensus 114 K~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g-~P~VvKP~~g~~s~----Gv~~v~~~~el~~~~~~~~~~~~-- 186 (395)
T PRK09288 114 REGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIG-YPCVVKPVMSSSGK----GQSVVRSPEDIEKAWEYAQEGGR-- 186 (395)
T ss_pred HHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcC-CCEEEEeCCCcCCC----CeEEECCHHHHHHHHHHHHhhcc--
Confidence 45567888 479999999999999999999999999 99999996444444 89999999999999988754211
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
. .-..++||||++.+.|+.+.+..|... .+.+... .+ ... .+........|
T Consensus 187 -----~--~~~~~lvEefi~~~~E~sv~~~~~~~~-~~~~~~~-~~-----~~~---~~~~~~~~~~p------------ 237 (395)
T PRK09288 187 -----G--GAGRVIVEEFIDFDYEITLLTVRAVDG-GTHFCAP-IG-----HRQ---EDGDYRESWQP------------ 237 (395)
T ss_pred -----c--cCCCEEEEEecCCCEEEEEEEEEcCCC-CEEEecC-cc-----cEE---ECCEEEEEECC------------
Confidence 0 014689999999889999988888542 2322211 11 000 00111112223
Q ss_pred HHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEee
Q psy3769 164 SKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNF 218 (974)
Q Consensus 164 ~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~l 218 (974)
..++++..+++.+++.++.+.+...++.-+| +++++++ +++++.--++
T Consensus 238 ---~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve---~~~~~~~-~~viEinpR~ 285 (395)
T PRK09288 238 ---QPMSPAALEEAQEIAKKVTDALGGRGLFGVE---LFVKGDE-VYFSEVSPRP 285 (395)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHcCCeeEEEEE---EEEeCCe-EEEEEecCCC
Confidence 1234455566777777777777655677777 6776664 6666554333
No 74
>PRK05586 biotin carboxylase; Validated
Probab=98.85 E-value=9.3e-08 Score=112.94 Aligned_cols=173 Identities=20% Similarity=0.239 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKG--ILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~--~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+-+..|++|+++|||+|++ ..+.+.+|+.++++++| ||+||||.-..||| ||.+++|++|+++++++......
T Consensus 115 DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~ig-yPvvvKP~~gggg~----Gv~~v~~~~el~~a~~~~~~~~~ 189 (447)
T PRK05586 115 NKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIG-YPVMVKASAGGGGR----GIRIVRSEEELIKAFNTAKSEAK 189 (447)
T ss_pred CHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcC-CCEEEEECCCCCCC----eeEEECCHHHHHHHHHHHHHHHH
Confidence 3467899999999999997 46789999999999999 99999994433444 99999999999998876654221
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
.+ .+ -..++|||+++..+|+.+.+..|.. +.++ .++ -.+. .....+ .++ ....|..
T Consensus 190 --~~---~~--~~~vivEe~i~g~~ei~v~v~~d~~-G~~~-~~~---~~~~-~~~~~~-~~~--~~~~p~~-------- 245 (447)
T PRK05586 190 --AA---FG--DDSMYIEKFIENPKHIEFQILGDNY-GNVV-HLG---ERDC-SLQRRN-QKV--LEEAPSP-------- 245 (447)
T ss_pred --Hh---cC--CCeEEEEecCCCCeEEEEEEEECCC-CCEE-EEe---ceec-ceEecc-cce--EEEcCCC--------
Confidence 00 11 1368999999977998899998853 3332 221 1110 011111 112 2223321
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
.+++...+++.+.+.++.+.+.-.++.-+| ++++++|+++.++.
T Consensus 246 ------~l~~~~~~~l~~~a~~i~~aLg~~g~~~vE---f~~~~~g~~~~iEv 289 (447)
T PRK05586 246 ------VMTEELRKKMGEIAVKAAKAVNYKNAGTIE---FLLDKDGNFYFMEM 289 (447)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCcceeEEE---EEEcCCCCEEEEEE
Confidence 234455667888888888887766676788 77887777666554
No 75
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=98.85 E-value=1.8e-09 Score=129.24 Aligned_cols=124 Identities=23% Similarity=0.461 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 2 NIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 2 ~L~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
.+.|+|+++++++|||++|++ ++++++|+..+++.++ + ..=+++.| |++.|||.+..+..++++++..++.+
T Consensus 470 ~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~~-K--l~s~~i~h--ksev~gv~l~~~~~~v~~a~~~~~~~-- 541 (598)
T COG1042 470 TLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESIG-K--LRSPDIDH--KSEVGGVMLNRTADAVEKAADDILAR-- 541 (598)
T ss_pred ccCchhhhhHHHHhcCccccc-ccCCHHHHHHHHHHhh-h--ccCCccch--hhhccceeecCcHHHHHHHHHhHhcc--
Confidence 478999999999999999999 9999999999999986 1 12247777 99999999999999999999998765
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCC
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDP 151 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p 151 (974)
. ..+.+++||+|.. .|+++++..|+.|+ |+++++ .||+.+|.+.|.. +.++|
T Consensus 542 -------p-a~i~g~lvq~m~~--~E~~vgv~~dp~fg-p~i~~G-~Gg~~ve~l~d~~------~~~~P 593 (598)
T COG1042 542 -------P-ARIAGVLVQTMAK--LELIVGVKNDPTFG-PLILFG-EGGIEVEVLKDVV------VALPP 593 (598)
T ss_pred -------c-chhhhhhhHhhhh--ccceeeccCCCcch-hHHHhc-CCceEEEeeccee------eccCC
Confidence 2 6688999999998 99999999999886 778888 9999999999976 77777
No 76
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=98.85 E-value=2.3e-09 Score=106.91 Aligned_cols=59 Identities=51% Similarity=0.714 Sum_probs=57.2
Q ss_pred EecCcchhhHHHHHHHhc--------------CCCCceeeecCCCCC----------HHHHHHHHHHHhhcCCeEEEEEc
Q psy3769 267 LVNGAGLAMATMDTIKLF--------------GGEPANFLDIGGGAT----------IKTITEAFKIMMQQNNLKTILVN 322 (974)
Q Consensus 267 ~~nGaGlam~t~D~i~~~--------------gg~panfld~GG~a~----------~~~v~~a~~~il~~~~~~~i~vn 322 (974)
|.|||||+|.|||++..+ |+.++||+|+||.+. .+++.++++.+++||++++||+|
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 579999999999999999 999999999999999 79999999999999999999999
Q ss_pred ccc
Q psy3769 323 IFG 325 (974)
Q Consensus 323 i~G 325 (974)
+++
T Consensus 81 ~~~ 83 (153)
T PF00549_consen 81 IVG 83 (153)
T ss_dssp EES
T ss_pred ecc
Confidence 997
No 77
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.84 E-value=7.8e-08 Score=109.83 Aligned_cols=168 Identities=11% Similarity=0.038 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHcCCCCCCceeeC------CHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHH
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCM------NVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKIL 77 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~------s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l 77 (974)
+-+.+|++|+++|||||++..++ +.+++.+..++++ ||+||||. .||.+ =||.+++|.+|+++++++++
T Consensus 130 DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~-~PvvVKP~--~ggsS--~GV~~v~~~~el~~a~~~~~ 204 (347)
T PRK14572 130 DKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLLKLESLG-FPQFLKPV--EGGSS--VSTYKITNAEQLMTLLALIF 204 (347)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEccccccChHHHHHHHHhcC-CCEEEecC--CCCCC--CCEEEECCHHHHHHHHHHHH
Confidence 45778999999999999998874 3445545556788 99999993 23333 38999999999999988875
Q ss_pred hccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCc--eeeeccCCCCcceeeccccCCcceEEEEeCCCCCC
Q psy3769 78 GMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQN--IIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGL 155 (974)
Q Consensus 78 ~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~--pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl 155 (974)
... ..++||||++ ++|+.+++..|...+. ++.+.. .|... ..++
T Consensus 205 ~~~-------------~~vlVEefI~-G~E~sv~vi~~~~~g~~~~~~l~~------~ei~~--------------~~~~ 250 (347)
T PRK14572 205 ESD-------------SKVMSQSFLS-GTEVSCGVLERYRGGKRNPIALPA------TEIVP--------------GGEF 250 (347)
T ss_pred hcC-------------CCEEEEcCcc-cEEEEEEEEeCccCCCCCceeccc------EEEec--------------CCCc
Confidence 321 2589999998 7999999986532221 211111 01111 0001
Q ss_pred CHHHHHHH------HHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 156 TKNNIDNI------SKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 156 ~~~~a~~~------~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
.++++... ..+..++++..+++.+++.++++.+...+...+| ++++ +|++++++.
T Consensus 251 ~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD---~~~~-~~~~~vlEi 311 (347)
T PRK14572 251 FDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTD---FIIV-DGEPHILET 311 (347)
T ss_pred cCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEE---EEEE-CCcEEEEee
Confidence 11111110 0112356677788999999999998877888888 7776 455776553
No 78
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=98.81 E-value=8.4e-08 Score=109.40 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+-..+|++|+++|||+|++..+++.++.. .++++ ||+||||.- +|.+ -||.+++|.+|+.++.++.....
T Consensus 132 DK~~~k~~l~~~GIp~p~~~~~~~~~~~~--~~~l~-~P~iVKP~~--~gsS--~Gv~~v~~~~eL~~a~~~a~~~~--- 201 (343)
T PRK14568 132 DKSLAYIVAKNAGIATPAFWTVTADERPD--AATLT-YPVFVKPAR--SGSS--FGVSKVNSADELDYAIESARQYD--- 201 (343)
T ss_pred CHHHHHHHHHHcCcCcCCEEEEECCchhh--hhhcC-CCEEEEeCC--CCCC--CCEEEeCCHHHHHHHHHHHHhcC---
Confidence 45678999999999999999987765432 35688 999999943 2222 39999999999999988764321
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH--
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID-- 161 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~-- 161 (974)
..++|||+++ ++|+.+++..|+.. .++ + .+ .|.. +..++.++...
T Consensus 202 ----------~~vlVEe~I~-G~E~sv~vl~~~~~-~~~---~---~~-~~i~--------------~~~~~~~~~~k~~ 248 (343)
T PRK14568 202 ----------SKVLIEEAVV-GSEVGCAVLGNGAD-LVV---G---EV-DQIR--------------LSHGFFRIHQENE 248 (343)
T ss_pred ----------CcEEEECCcC-CEEEEEEEEcCCCC-cce---e---cc-eEEe--------------cCCCccchhhhhc
Confidence 3689999998 79999999876431 111 1 00 0000 00001111110
Q ss_pred --------HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 162 --------NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 162 --------~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
....+..++++..+++.+++.++++.+...++..+| ++++++|+++.++.
T Consensus 249 ~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD---f~l~~~g~~~llEI 306 (343)
T PRK14568 249 PEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVD---MFLQEDGTVVLNEV 306 (343)
T ss_pred cccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEE---EEEeCCCCEEEEEe
Confidence 011123466777888999999999999888888899 88888887766554
No 79
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.81 E-value=2.2e-07 Score=95.45 Aligned_cols=97 Identities=26% Similarity=0.335 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+-+..+++++++|+|+|++..+.+.+++.+.++.++ +|+||||....|++ ||.+++|++++.+.++++.....
T Consensus 4 dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~~-~p~vvKp~~g~gs~----gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 4 DKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDLG-FPFVVKPVDGSGSR----GVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp CHHHHHHHHHHHTS----EEEECSHHHHHHHHHHSS-SSEEEEESS-STTT----T-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcC-CCEEEEcCccccCC----CEEEeCCHHHHHHHHHHHHHhcc--
Confidence 356789999999999999999999999999999999 89999996555444 99999999999999888754321
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEe
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTD 115 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~D 115 (974)
.....++|||+++ +.|+.+-+..+
T Consensus 77 -------~~~~~~ivqe~i~-g~e~~~~~~~~ 100 (184)
T PF13535_consen 77 -------LGNGPVIVQEYIP-GDEYSVDGVVD 100 (184)
T ss_dssp --------HSSSEEEEE----SEEEEEEEEEE
T ss_pred -------cCCccEEEEEeee-eeeEEEEEEEE
Confidence 1224689999999 79999998888
No 80
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.81 E-value=2e-07 Score=110.24 Aligned_cols=174 Identities=19% Similarity=0.217 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKG--ILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~--~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+-+..|++|+++|||+|++ ..+++.+|+.++++++| ||+|+||.-..||+ ||.+++|.+|+++++++......
T Consensus 115 DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g-~PvvvKP~~g~gs~----Gv~iv~~~~el~~~~~~~~~~~~ 189 (451)
T PRK08591 115 DKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIG-YPVIIKATAGGGGR----GMRVVRTEAELEKAFSMARAEAK 189 (451)
T ss_pred CHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcC-CCEEEEECCCCCCc----eEEEECCHHHHHHHHHHHHHHHH
Confidence 3567899999999999987 47789999999999999 99999995434444 99999999999999888654211
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
.. .+ ...++|||+++..+|+.+.+..|... .. +.+ |..+.. ....+ .......|..
T Consensus 190 --~~---~~--~~~vlvEe~i~g~~e~~v~v~~d~~g-~~-~~~---~~~~~~-~~~~~---~~~~~~~p~~-------- 245 (451)
T PRK08591 190 --AA---FG--NPGVYMEKYLENPRHIEIQVLADGHG-NA-IHL---GERDCS-LQRRH---QKVLEEAPSP-------- 245 (451)
T ss_pred --Hh---cC--CCCEEEEeCCCCCcEEEEEEEEcCCC-CE-EEE---eccccc-ceecc---eeEEEECCCC--------
Confidence 00 01 13689999998778999999998643 23 222 211111 11111 1112223311
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
.+++...+++.+.+.++.+.+.-.++.-+| ++++++|+++.++.-
T Consensus 246 ------~l~~~~~~~l~~~a~~~~~~lg~~G~~~vE---f~~~~~g~~~viEIN 290 (451)
T PRK08591 246 ------AITEELRRKIGEAAVKAAKAIGYRGAGTIE---FLYEKNGEFYFIEMN 290 (451)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCceEEEE---EEEcCCCCEEEEEEE
Confidence 234455677788888888877655676778 777767767666554
No 81
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.80 E-value=1.7e-07 Score=111.39 Aligned_cols=173 Identities=18% Similarity=0.265 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGIL--CMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~--~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+.+.+|++|+++|||+|++.. +++.+|+.++++++| ||+|+||.-..||| ||.+++|++|+++++++......
T Consensus 114 DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~ig-yPvvvKp~~ggGg~----Gv~~v~~~~eL~~a~~~~~~~~~ 188 (472)
T PRK07178 114 DKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIG-YPVMLKATSGGGGR----GIRRCNSREELEQNFPRVISEAT 188 (472)
T ss_pred CHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCC----CceEeCCHHHHHHHHHHHHHHHH
Confidence 356789999999999988764 789999999999999 99999995444444 89999999999998887654321
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
++ .+ ...+++|++++..+|+.+.+..|.. +..+.++- ... .....++ ++ ....|..
T Consensus 189 --~~---~~--~~~v~iE~~i~~~~eiev~v~~d~~-G~~v~~~e--r~~---s~~~~~~-~~--~e~~P~~-------- 244 (472)
T PRK07178 189 --KA---FG--SAEVFLEKCIVNPKHIEVQILADSH-GNVVHLFE--RDC---SIQRRNQ-KL--IEIAPSP-------- 244 (472)
T ss_pred --Hh---cC--CCCEEEEEcCCCCeEEEEEEEEECC-CCEEEEEc--ccc---ceEecCc-ce--EEECCCC--------
Confidence 01 11 1358999999888999999999853 33433221 101 1111121 11 2233421
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
.++++..+++.+.+.++.+.+.-.++.-+| ++++++|+++.++.
T Consensus 245 ------~l~~~~~~~i~~~a~~~~~aLg~~g~~~vE---f~~d~~g~~y~iEi 288 (472)
T PRK07178 245 ------QLTPEQRAYIGDLAVRAAKAVGYENAGTVE---FLLDADGEVYFMEM 288 (472)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCceeEEE---EEEeCCCCEEEEEE
Confidence 234556677777888888776554555577 67766666665554
No 82
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.80 E-value=2.1e-07 Score=110.44 Aligned_cols=172 Identities=16% Similarity=0.225 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGI--LCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~--~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+.+.+|++|+++|||+|++. .+++.+|+.++++++| ||+|+||.-..||| ||.+++|++|+.++++.......
T Consensus 118 DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~ig-yPvvvKp~~gggg~----Gv~~v~~~~eL~~a~~~~~~~~~ 192 (467)
T PRK12833 118 DKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIG-YPLMIKAAAGGGGR----GIRVAHDAAQLAAELPLAQREAQ 192 (467)
T ss_pred CHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhC-CCEEEEECCCCCCC----eEEEECCHHHHHHHHHHHHHHHH
Confidence 45678999999999999885 7899999999999999 99999995444444 99999999999998876543211
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
.. .+ ...++||++++.++|+.+.+..|.. ..+.++-. + ..+..++ +++. ...|..
T Consensus 193 --~~---~~--~~~vlvEefi~~~~ei~v~v~~dg~--~~~~~~~~----~-~~~~r~~-~ki~--e~~p~~-------- 247 (467)
T PRK12833 193 --AA---FG--DGGVYLERFIARARHIEVQILGDGE--RVVHLFER----E-CSLQRRR-QKIL--EEAPSP-------- 247 (467)
T ss_pred --Hh---cC--CCcEEEEecCCCCEEEEEEEEeCCC--cEEEEEEe----e-cccccCC-ccEE--EECCCC--------
Confidence 00 11 2368999999888999999988864 23222210 0 1111111 2222 223321
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEc-cCCcEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVIN-SKNKIISLDI 214 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~-~~g~~~alDa 214 (974)
.+++...+++.+.+.++.+.+.-.++.-+| ++++ .+|+++.++.
T Consensus 248 ------~l~~~~~~~l~~~a~~~~~alg~~G~~~vE---f~~~~~~g~~~~iEv 292 (467)
T PRK12833 248 ------SLTPAQRDALCASAVRLARQVGYRGAGTLE---YLFDDARGEFYFIEM 292 (467)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCcCcceEE---EEEecCCCCEEEEEE
Confidence 233445567777788888776555666677 6665 3565665554
No 83
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.79 E-value=1.6e-07 Score=107.76 Aligned_cols=167 Identities=19% Similarity=0.242 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHcCCCCCCceeeC------CHHHHHHH-HHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHH
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCM------NVDEAIKA-AKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKI 76 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~------s~eea~~~-a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~ 76 (974)
+-+.+|++|+++|||||++..++ +.+++.+. .+++| +|++|||. .+|. +-||.+++|.+|+.++.++.
T Consensus 129 DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg-~PviVKP~--~~Gs--S~Gv~~v~~~~el~~al~~a 203 (364)
T PRK14570 129 NKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLG-YPVIVKPA--VLGS--SIGINVAYNENQIEKCIEEA 203 (364)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHHHHHhcC-CCEEEEeC--CCCC--CCcEEEeCCHHHHHHHHHHH
Confidence 45779999999999999987664 34555433 46788 99999994 2222 23899999999999998887
Q ss_pred HhccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCC
Q psy3769 77 LGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLT 156 (974)
Q Consensus 77 l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~ 156 (974)
+... ..++|||+++ ++|+.+++.-|.. +.++. . .|.... ...+.
T Consensus 204 ~~~~-------------~~vlVEefI~-GrEi~v~Vlg~~~---~~v~~--~----~Ei~~~-------------~~~f~ 247 (364)
T PRK14570 204 FKYD-------------LTVVIEKFIE-AREIECSVIGNEQ---IKIFT--P----GEIVVQ-------------DFIFY 247 (364)
T ss_pred HhCC-------------CCEEEECCcC-CEEEEEEEECCCC---ceEee--e----EEEEeC-------------CCCcc
Confidence 6321 3589999998 8999999986632 21111 1 111100 00011
Q ss_pred HHHHHH---------HHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEcc-CCcEEEEEE
Q psy3769 157 KNNIDN---------ISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINS-KNKIISLDI 214 (974)
Q Consensus 157 ~~~a~~---------~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~-~g~~~alDa 214 (974)
++++.. ...+..++++..+++.+++.++++.+...++..+| +++++ +|+++.++.
T Consensus 248 dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvD---f~l~~~~g~~yvlEi 312 (364)
T PRK14570 248 DYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARID---FLIEKDTGLIYLNEI 312 (364)
T ss_pred CHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEE---EEEECCCCcEEEEEe
Confidence 111111 01122466778889999999999999999999999 88875 477776554
No 84
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.78 E-value=1.2e-07 Score=105.93 Aligned_cols=164 Identities=15% Similarity=0.222 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+.+.+|++|+++|||||++..+++.. ...+.++ ||+||||- .||.|. ||.+++|++|+.++.++...
T Consensus 98 DK~~~k~~l~~~gIptp~~~~~~~~~---~~~~~~~-~P~vVKP~--~ggss~--Gv~~v~~~~eL~~a~~~~~~----- 164 (296)
T PRK14569 98 DKMISKEILMHHRMPTPMAKFLTDKL---VAEDEIS-FPVAVKPS--SGGSSI--ATFKVKSIQELKHAYEEASK----- 164 (296)
T ss_pred CHHHHHHHHHHCCCCCCCeEEEchhh---hhHhhcC-CCEEEEeC--CCCCCc--CeEEcCCHHHHHHHHHHHHh-----
Confidence 45778999999999999998876532 2346788 99999994 333332 79999999999998877521
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
. ..++|||+++ ++|+.+++..|.... .+.+.. .... ...-.+...+.. ...|
T Consensus 165 -----~----~~~lvEefI~-G~E~tv~vl~~~~~~-~~~i~~-~~~~-~~~~~k~~~~~~---~~~P------------ 216 (296)
T PRK14569 165 -----Y----GEVMIEQWVT-GKEITVAIVNDEVYS-SVWIEP-QNEF-YDYESKYSGKSI---YHSP------------ 216 (296)
T ss_pred -----c----CCEEEEcccc-cEEEEEEEECCcCcc-eEEEec-CCCc-CChhhccCCCcE---EEeC------------
Confidence 1 2589999998 799999998664322 211111 1100 000000000110 1111
Q ss_pred HHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 164 SKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 164 ~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
..+++...+++.++..++++.+...+...+| ++++++|+++.++.
T Consensus 217 ---~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD---~~~~~~g~~~vlEI 261 (296)
T PRK14569 217 ---SGLCEQKELEVRQLAKKAYDLLGCSGHARVD---FIYDDRGNFYIMEI 261 (296)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHhCCceEEEEE---EEEcCCCCEEEEEe
Confidence 1234455678889999999998877888888 78877787766554
No 85
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.77 E-value=4.6e-07 Score=104.70 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=109.2
Q ss_pred CHHHHHHHH-HHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccc
Q psy3769 4 YEYQGKEIL-RKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 4 ~E~~ak~lL-~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~ 82 (974)
+-+..|+++ +++|||+|++..+++.+++.++++++| ||+|+||--..+++ ||.+++|++|++++++.+.....
T Consensus 100 dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~g-~P~VvKP~~g~~s~----gv~~v~~~~el~~~~~~~~~~~~- 173 (380)
T TIGR01142 100 NREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIG-YPCVVKPVMSSSGK----GQSVVRGPEDIEKAWEYAQEGAR- 173 (380)
T ss_pred CHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcC-CCEEEEECCCcCCC----CeEEECCHHHHHHHHHHHHhhcc-
Confidence 345567765 899999999999999999999899999 99999995333333 89999999999999888753211
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHH
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDN 162 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~ 162 (974)
..-..++||||++.+.|+.+.+..+.+ +...+ ....+ .... +......+.|.
T Consensus 174 --------~~~~~~ivEe~i~~~~E~sv~~~~~~~-g~~~~-~~~~~-----~~~~---~~~~~~~~~p~---------- 225 (380)
T TIGR01142 174 --------GGAGRVIVEEFIDFDYEITLLTVRHVD-GNTTF-CAPIG-----HRQI---DGDYHESWQPQ---------- 225 (380)
T ss_pred --------CCCCCEEEEEecCCCEEEEEEEEEcCC-CCEEE-ecCcc-----eEEe---CCeeEEEECCC----------
Confidence 011368999999977898887776542 22221 11111 1110 11112223331
Q ss_pred HHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 163 ISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 163 ~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
.+++...+++.+++.++.+.+...++.-+| +++++++ ++..+.-
T Consensus 226 -----~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie---~~~~~~~-~~viEin 269 (380)
T TIGR01142 226 -----EMSEKALEEAQRIAKRITDALGGYGLFGVE---LFVKGDE-VIFSEVS 269 (380)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCcceEEEE---EEEECCc-EEEEEee
Confidence 234455566777777777776655666667 6666543 5555443
No 86
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.76 E-value=4e-07 Score=102.43 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHcCCCCCCceeeC-CHHHH-----HHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHH
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCM-NVDEA-----IKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKIL 77 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~-s~eea-----~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l 77 (974)
+.+..|++|+++|||+|++.+++ +.++. .++.+.++ +|+|+||....+++ ||.+++|.+|+++++++.+
T Consensus 105 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~-~P~vvKP~~~~~s~----Gv~~v~~~~el~~~~~~~~ 179 (315)
T TIGR01205 105 DKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPLG-FPVIVKPAREGSSV----GVSKVKSEEELQAALDEAF 179 (315)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHHHHhcC-CCEEEEeCCCCCcc----CEEEECCHHHHHHHHHHHH
Confidence 45678999999999999999887 54432 23446788 89999995433333 7999999999999888765
Q ss_pred hccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeecccc-CCcceEEEEeCCCCCCC
Q psy3769 78 GMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKN-SPELLYKTIIDPLIGLT 156 (974)
Q Consensus 78 ~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~-~p~~i~~~~i~p~~gl~ 156 (974)
... ..++|||+++ ++|+.+++..+.... +++........ +.....+ .+.. . ....|
T Consensus 180 ~~~-------------~~~lvEe~i~-G~e~~v~vi~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~p----- 236 (315)
T TIGR01205 180 EYD-------------EEVLVEQFIK-GRELEVSILGNEEAL-PIIEIVPEIEG-FYDYEAKYLDGS-T-EYVIP----- 236 (315)
T ss_pred hcC-------------CcEEEEcCCC-CEEEEEEEECCCCcc-ceEEecCCCCC-eeCcccccCCCC-e-eEEeC-----
Confidence 321 3589999998 899999998854222 32221111110 0000000 0000 0 00111
Q ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 157 KNNIDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 157 ~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
..++++..+++.+.+.++++.+.-.++.-+| ++++++|+++.++.
T Consensus 237 ----------~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD---~~~~~~g~~~viEv 281 (315)
T TIGR01205 237 ----------APLDEELEEKIKELALKAYKALGCRGLARVD---FFLDEEGEIYLNEI 281 (315)
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHhCCCceEEEE---EEEeCCCCEEEEEe
Confidence 1345567778899999999988766788888 88887777776664
No 87
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.75 E-value=3e-07 Score=109.67 Aligned_cols=172 Identities=21% Similarity=0.289 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGIL--CMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~--~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+-+.+|++++++|||+|++.. +++.+|+.++++++| ||+++||..-.||| |+++++|++|+++++++......
T Consensus 115 DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~ig-yPvvIKp~~GgGG~----Gv~iv~~~~eL~~a~~~~~~~a~ 189 (499)
T PRK08654 115 SKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIG-YPVIIKASAGGGGI----GMRVVYSEEELEDAIESTQSIAQ 189 (499)
T ss_pred CHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----eEEEeCCHHHHHHHHHHHHHHHH
Confidence 356789999999999988865 689999999999999 99999995444444 99999999999999887643211
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
.. .+ -..++||++++..+|+.+.+..|.. +..+.++. .+- .+..+++ ++. ...|...
T Consensus 190 --~~---f~--~~~v~vE~~I~~~r~ieVqvl~d~~-G~vv~l~~----rec-siqrr~q-k~i--e~~Pa~~------- 246 (499)
T PRK08654 190 --SA---FG--DSTVFIEKYLEKPRHIEIQILADKH-GNVIHLGD----REC-SIQRRHQ-KLI--EEAPSPI------- 246 (499)
T ss_pred --Hh---CC--CCeEEEEeCCCCCcEEEEEEEEcCC-CCEEEEee----ecc-ccccCcc-ceE--EECCCCC-------
Confidence 00 11 1368999999988999999999963 33432221 110 1122222 222 2233211
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
++++..+++.+.+.++.+.+.-.++.-+| ++++ +|+++.++.
T Consensus 247 -------l~~~~~~~l~~~A~~l~~algy~g~gtVE---fl~~-~g~~yflEi 288 (499)
T PRK08654 247 -------MTPELRERMGEAAVKAAKAINYENAGTVE---FLYS-NGNFYFLEM 288 (499)
T ss_pred -------CCHHHHHHHHHHHHHHHHHcCCCCceEEE---EEEE-CCcEEEEEE
Confidence 33445566777777777776655555567 5553 455665554
No 88
>PLN02735 carbamoyl-phosphate synthase
Probab=98.74 E-value=1.3e-07 Score=121.88 Aligned_cols=100 Identities=24% Similarity=0.269 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITS 84 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~ 84 (974)
-...|++|+++|+|+|++..+++.+|+.++++++|.||+||||....||+ |+.+++|.+|+++++++.+...
T Consensus 145 K~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~~iG~yPvVVKP~~~~GG~----Gv~iv~n~eEL~~a~~~a~~~s---- 216 (1102)
T PLN02735 145 RELFKQAMEKIGLKTPPSGIATTLDECFEIAEDIGEFPLIIRPAFTLGGT----GGGIAYNKEEFETICKAGLAAS---- 216 (1102)
T ss_pred HHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHHHhCCCCEEEEeCCCCCCC----ceEEECCHHHHHHHHHHHHhcC----
Confidence 45679999999999999999999999999999997689999996555665 7789999999999988765321
Q ss_pred ccCCCCCceeEEEEEEEeccceeEEEEEEEeccCC
Q psy3769 85 QTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQ 119 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~ 119 (974)
....++|||++..++|+.+.+.+|....
T Consensus 217 -------~~~~VLVEe~I~G~kE~ev~Vl~D~~g~ 244 (1102)
T PLN02735 217 -------ITSQVLVEKSLLGWKEYELEVMRDLADN 244 (1102)
T ss_pred -------CCCeEEEEEecCCCeEEEEEEEEcCCCC
Confidence 2357999999997799999999996433
No 89
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.74 E-value=2e-07 Score=117.80 Aligned_cols=169 Identities=12% Similarity=0.074 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCC------HHH-HHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHH
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMN------VDE-AIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKI 76 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s------~ee-a~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~ 76 (974)
+-+.+|++|+++|||||++..++. .++ ..++.+++| ||++|||-- +|- +-||.++++.+|+.+++++.
T Consensus 568 DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg-~P~iVKP~~--~Gs--S~Gv~~v~~~~el~~a~~~a 642 (809)
T PRK14573 568 DKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFS-FPMFVKTAH--LGS--SIGVFEVHNVEELRDKISEA 642 (809)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHHHHHHhcC-CCEEEeeCC--CCC--CCCEEEECCHHHHHHHHHHH
Confidence 456789999999999999988763 222 345667898 999999942 223 34999999999999999887
Q ss_pred HhccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCC
Q psy3769 77 LGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLT 156 (974)
Q Consensus 77 l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~ 156 (974)
+... ..++|||++..++|+.+++..|... ..++.. . +|...+ .. +.
T Consensus 643 ~~~~-------------~~vlVEe~i~~grEi~v~vl~~~~~--~~~~~~-~----~e~~~~---~~-----------f~ 688 (809)
T PRK14573 643 FLYD-------------TDVFVEESRLGSREIEVSCLGDGSS--AYVIAG-P----HERRGS---GG-----------FI 688 (809)
T ss_pred HhcC-------------CcEEEEeccCCCEEEEEEEEeCCCC--ceEecc-c----eEEccC---CC-----------ee
Confidence 5321 3589999998789999999988542 111111 1 122110 00 11
Q ss_pred HHHHHH---------HHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 157 KNNIDN---------ISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 157 ~~~a~~---------~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
++++.. ...+..++++..+++.++..++++.+...+...+| ++++++|+++.++.
T Consensus 689 dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riD---f~v~~~g~~yv~Ei 752 (809)
T PRK14573 689 DYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRID---FFLDEEGNFWLSEM 752 (809)
T ss_pred CchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEE---EEEcCCCCEEEEEe
Confidence 111110 11123567788899999999999999988988899 88888887776554
No 90
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.74 E-value=3.4e-07 Score=108.22 Aligned_cols=174 Identities=17% Similarity=0.244 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKG--ILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~--~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+.+..|++|+++|||+|++ ..+++.+|+.++++++| ||+|+||....||+ ||.+++|.+|+.+++++......
T Consensus 115 dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~-~P~VvKP~~g~gs~----Gv~iv~~~~el~~a~~~~~~~~~ 189 (450)
T PRK06111 115 SKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIG-YPVMLKASAGGGGI----GMQLVETEQELTKAFESNKKRAA 189 (450)
T ss_pred CHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhC-CCEEEEeCCCCCCc----eEEEECCHHHHHHHHHHHHHHHH
Confidence 4567899999999999986 55689999999999999 99999996555555 99999999999999887643211
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
... + -..++|||+++..+|+.+.+..|.. +..+.++.. + ....+.++. +. ...|..
T Consensus 190 --~~~---~--~~~~lvEe~i~g~~e~~v~v~~~~~-g~~~~~~~~----~-~~~~~~~~~-~~--~~~p~~-------- 245 (450)
T PRK06111 190 --NFF---G--NGEMYIEKYIEDPRHIEIQLLADTH-GNTVYLWER----E-CSVQRRHQK-VI--EEAPSP-------- 245 (450)
T ss_pred --Hhc---C--CCcEEEEcccCCCcEEEEEEEEcCC-CCEEEEEee----c-ccccccccc-eE--EecCCC--------
Confidence 000 1 1268999999977888898888864 333222210 0 001111111 11 111211
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
.+++...+++.+.+.++.+.+.-.++.-+| ++++++|+++.++.-
T Consensus 246 ------~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve---~~~~~~g~~~viEiN 290 (450)
T PRK06111 246 ------FLDEETRKAMGERAVQAAKAIGYTNAGTIE---FLVDEQKNFYFLEMN 290 (450)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCCceeEE---EEEcCCCCEEEEEEE
Confidence 123445667777777777776555666678 778877766665554
No 91
>PLN02735 carbamoyl-phosphate synthase
Probab=98.72 E-value=4.7e-07 Score=116.91 Aligned_cols=168 Identities=18% Similarity=0.305 Sum_probs=119.0
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITS 84 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~ 84 (974)
-+..|++|+++|||+|++..+++.+|+.++++++| ||++|||....||| |+.+++|.+|+++++++......
T Consensus 703 K~~~k~~l~~~GIp~p~~~~v~s~eea~~~a~~iG-yPvvVKP~~g~gG~----G~~iV~~~eeL~~al~~a~~~~~--- 774 (1102)
T PLN02735 703 RERFNAILNELKIEQPKGGIARSEADALAIAKRIG-YPVVVRPSYVLGGR----AMEIVYSDDKLKTYLETAVEVDP--- 774 (1102)
T ss_pred HHHHHHHHHHcCCCCCCeeEeCCHHHHHHHHHhcC-CCeEEEeCCCCCCC----cEEEECCHHHHHHHHHHHHHhcC---
Confidence 45679999999999999999999999999999999 99999996555555 89999999999999888754211
Q ss_pred ccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeecccc--C-CcceEEEEeCCCCCCCHHHHH
Q psy3769 85 QTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKN--S-PELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~--~-p~~i~~~~i~p~~gl~~~~a~ 161 (974)
-..++||++++.++|+.+.+..|.+ +.++ +.+ - .|...+. + -+.. ...|.
T Consensus 775 --------~~~vlVEefI~~g~Ei~V~vl~D~~-G~vv-~~~---i--~e~~~~~gvhsGds~---~~~P~--------- 827 (1102)
T PLN02735 775 --------ERPVLVDKYLSDATEIDVDALADSE-GNVV-IGG---I--MEHIEQAGVHSGDSA---CSLPT--------- 827 (1102)
T ss_pred --------CCCEEEEEecCCcEEEEEEEEECCC-CCEE-Eec---c--eEeeeccCccCCCcc---EEecC---------
Confidence 1358999999888999999999864 2232 221 1 1211110 0 0111 11121
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
-.++++..+++.+...++.+.+.-.++.-+| ++++++|++++++.-
T Consensus 828 -----~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vq---f~v~~dg~~yviEiN 873 (1102)
T PLN02735 828 -----QTIPSSCLATIRDWTTKLAKRLNVCGLMNCQ---YAITPSGEVYIIEAN 873 (1102)
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHcCCcceeeEE---EEEcCCCcEEEEEEe
Confidence 1244556677788888888877766777777 777777777766654
No 92
>PRK08462 biotin carboxylase; Validated
Probab=98.72 E-value=4.1e-07 Score=107.42 Aligned_cols=173 Identities=19% Similarity=0.291 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGI--LCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~--~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+.+..|++|+++|||+|++. .+++.+|+.++++++| ||+|+||....||+ ||.+++|++|+.+++++......
T Consensus 117 dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g-~PvvvKP~~g~gs~----Gv~~v~~~~eL~~~~~~~~~~~~ 191 (445)
T PRK08462 117 DKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIG-YPVILKAAAGGGGR----GMRVVEDESDLENLYLAAESEAL 191 (445)
T ss_pred CHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHHHHHHHHH
Confidence 35678999999999999864 5789999999999999 99999995544545 99999999999998766433211
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
.+ .+ -..++|||+++.++|+.+.+..|.. +.++.+ + ..+.. ....++. . +...|..
T Consensus 192 --~~---~~--~~~vlvEe~i~g~~e~~v~v~~~~~-g~~~~~-g---~~~~~-~~~~~~~-~--~~~~p~~-------- 247 (445)
T PRK08462 192 --SA---FG--DGTMYMEKFINNPRHIEVQILGDKH-GNVIHV-G---ERDCS-LQRRHQK-L--IEESPAV-------- 247 (445)
T ss_pred --hc---cC--CCcEEEeccCCCCeEEEEEEEECCC-CCEEEE-E---ecccc-ceecccc-e--EEEcCCC--------
Confidence 00 11 1268999999878898898888853 434322 1 11100 1111111 1 1122311
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
.+++...+++.+.+.++.+.+.-.+..-+| ++++++|+++.++.
T Consensus 248 ------~l~~~~~~~i~~~a~~~~~alg~~G~~~ve---~~~~~~g~~~viEi 291 (445)
T PRK08462 248 ------VLDEKTRERLHETAIKAAKAIGYEGAGTFE---FLLDSNLDFYFMEM 291 (445)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCCcceEE---EEEeCCCCEEEEEE
Confidence 134445567777777777766544555566 66666655655544
No 93
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.68 E-value=6.7e-07 Score=106.47 Aligned_cols=173 Identities=19% Similarity=0.226 Sum_probs=113.4
Q ss_pred HHHHHHHHHHcCCCCCCceee---CCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILC---MNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~---~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
-+.+|++++++|||+|++... .+.+|+.++++++| ||+++||..-.||| ||++++|++|++++++.......
T Consensus 115 K~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~ig-yPvvvKP~~ggGg~----Gv~iv~~~~eL~~a~~~~~~~a~ 189 (478)
T PRK08463 115 KNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIG-YPVILKASGGGGGR----GIRVVHKEEDLENAFESCKREAL 189 (478)
T ss_pred HHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----ceEEeCCHHHHHHHHHHHHHHHH
Confidence 467899999999999885442 57899999999999 99999995444444 99999999999998876432211
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHH
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNID 161 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~ 161 (974)
.. .+ -..++||++++..+|+.+.+..|. .+.. +..... ... ..+.++ ++ +...|...
T Consensus 190 --~~---~~--~~~vlvEefI~~~~~iev~v~~d~-~g~v-~~~~er-~~s---~~~~~~-~~--ie~~P~~~------- 246 (478)
T PRK08463 190 --AY---FN--NDEVFMEKYVVNPRHIEFQILGDN-YGNI-IHLCER-DCS---IQRRHQ-KV--IEIAPCPS------- 246 (478)
T ss_pred --Hh---cC--CCcEEEEecCCCCeEEEEEEEEcC-CCCE-EEEecc-CCc---cccccC-ce--EEECCCCC-------
Confidence 00 01 136899999987788888888885 3333 222211 011 111222 12 23344222
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 162 NISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 162 ~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
+++...+++.+...++.+.+.-.++.-+| ++++++|+++.+..-
T Consensus 247 -------l~~~~~~~i~~~a~~~~~alg~~g~~~vE---f~~~~~~~~y~iEiN 290 (478)
T PRK08463 247 -------ISDNLRKTMGVTAVAAAKAVGYTNAGTIE---FLLDDYNRFYFMEMN 290 (478)
T ss_pred -------CCHHHHHHHHHHHHHHHHHcCCCCceeEE---EEEcCCCCEEEEEEE
Confidence 34455667778888888777655666778 777776777766554
No 94
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.67 E-value=2.2e-07 Score=120.45 Aligned_cols=99 Identities=27% Similarity=0.371 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITS 84 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~ 84 (974)
-+..|++|+++|||+|++..+++.+|+.++++++| ||+||||....||+ |+.+++|++|+.+++++.+...
T Consensus 129 K~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig-~PvVVKP~~g~gg~----Gv~iv~~~eeL~~a~~~~~~~s---- 199 (1066)
T PRK05294 129 RELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEIG-YPVIIRPSFTLGGT----GGGIAYNEEELEEIVERGLDLS---- 199 (1066)
T ss_pred HHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHcC-CCeEEEcCCCCCCC----CeEEECCHHHHHHHHHHHHhhC----
Confidence 35568999999999999999999999999999999 99999996444444 7889999999999888765321
Q ss_pred ccCCCCCceeEEEEEEEeccceeEEEEEEEeccCC
Q psy3769 85 QTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQ 119 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~ 119 (974)
+...++|||++++.+|+.+.+.+|....
T Consensus 200 -------~~~~vlvEe~I~G~~Eisv~v~rd~~g~ 227 (1066)
T PRK05294 200 -------PVTEVLIEESLLGWKEYEYEVMRDKNDN 227 (1066)
T ss_pred -------CCCeEEEEEcccCceEEEEEEEEcCCCC
Confidence 1246899999998899999999996443
No 95
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.67 E-value=6.2e-07 Score=116.00 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITS 84 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~ 84 (974)
-+..|++|+++|+|+|++..+++.+|+.++++++| ||+||||....||+ |+.+++|++|+.+++++.++..
T Consensus 128 K~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig-yPvIVKP~~g~gg~----Gv~iv~~~eeL~~~~~~~~~~s---- 198 (1050)
T TIGR01369 128 RELFREAMKEIGEPVPESEIAHSVEEALAAAKEIG-YPVIVRPAFTLGGT----GGGIAYNREELKEIAERALSAS---- 198 (1050)
T ss_pred HHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhC-CCeEEECCCCCCCC----CeEEECCHHHHHHHHHHHHhcC----
Confidence 45678999999999999999999999999999999 99999996544444 7889999999999888776432
Q ss_pred ccCCCCCceeEEEEEEEeccceeEEEEEEEeccCC
Q psy3769 85 QTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQ 119 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~ 119 (974)
+...++|||++++.+|+.+.+.+|....
T Consensus 199 -------~~~~vlVEe~I~G~~Eiev~v~rd~~g~ 226 (1050)
T TIGR01369 199 -------PINQVLVEKSLAGWKEIEYEVMRDSNDN 226 (1050)
T ss_pred -------CCCcEEEEEcccCceEEEEEEEEeCCCC
Confidence 1246899999998899999999996443
No 96
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.66 E-value=4.5e-08 Score=90.61 Aligned_cols=72 Identities=25% Similarity=0.378 Sum_probs=61.3
Q ss_pred ccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCC
Q psy3769 340 NYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEG 412 (974)
Q Consensus 340 ~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G 412 (974)
..||.-. .++.+||+..|+++.|+|+|.+++++.+..++|.+++++|++.+.+++++|++.|+|.++.+++|
T Consensus 25 ~~g~~i~-~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 25 MRGFGIV-AVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHCECEE-EEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESSS
T ss_pred HcCCCCE-EEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3455432 58999999889999999999999999874459999999999999999999999999999999875
No 97
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.65 E-value=6.9e-07 Score=104.90 Aligned_cols=180 Identities=14% Similarity=0.193 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCCCC-CceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeC----CHHHHHHHHHHHHhc
Q psy3769 5 EYQGKEILRKFNVTIP-KGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQ----SLEQVEKYTKKILGM 79 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp-~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~----s~ee~~~a~~~~l~~ 79 (974)
.+.+|++|+++|||+| .+..+.+.+|+.+++.+++ +|+||||.-..||| ||.++. +.+++.+++.++...
T Consensus 106 K~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~~-~PvVVKP~~~sggk----GV~v~~~~~~~~~ea~~~~~~~~~~ 180 (435)
T PRK06395 106 KMFMRYLMERHNIPGNINFNACFSEKDAARDYITSM-KDVAVKPIGLTGGK----GVKVTGEQLNSVDEAIRYAIEILDR 180 (435)
T ss_pred HHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhhC-CCEEEEeCCCCCCC----CeEEecCchhhHHHHHHHHHHHhCC
Confidence 4567999999999997 4457777888888888888 89999998778777 999984 345555554544311
Q ss_pred cccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCC-CCHH
Q psy3769 80 QLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIG-LTKN 158 (974)
Q Consensus 80 ~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~g-l~~~ 158 (974)
...++||||+. |.|+.+-+..|...-.+ +.. ++..++.. .-...|..| +-.+
T Consensus 181 -------------~~~viIEEfl~-G~E~Svd~~~dg~~~~~--l~~------~~d~~r~~-----~~d~gp~tGgmG~~ 233 (435)
T PRK06395 181 -------------DGVVLIEKKMT-GEEFSLQAFSDGKHLSF--MPI------VQDYKRAY-----EGDHGPNTGGMGSI 233 (435)
T ss_pred -------------CCcEEEEeecC-CceEEEEEEEcCCeEEE--ecc------cceeeecc-----cCCCCCccCCCccc
Confidence 13589999998 78999999998644322 211 11111000 000011110 0000
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHhhcccC-----CeeEEeeceeEEccCCcEEEEEEEEeeeCc
Q psy3769 159 NIDNISKKISIPKNSLINFYEEIQNIYKSYWET-----DSLLLEINPLVINSKNKIISLDIKFNFDTN 221 (974)
Q Consensus 159 ~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~-----d~~~lEINPL~v~~~g~~~alDaki~ldd~ 221 (974)
.-..+..+ -++++..+++.+++.++.+.+... ++.-+| +++|++| +.++..-.++.|.
T Consensus 234 s~~~~~~p-~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~---~~lt~~g-p~ViE~n~R~gdp 296 (435)
T PRK06395 234 SDRDFSLP-FLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQ---FMDTPNG-VKVIEINARFADP 296 (435)
T ss_pred cCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEE---EEEeCCC-cEEEEEeCCCCCc
Confidence 00000000 144556666677777777666542 234577 7888777 8888877776664
No 98
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.64 E-value=9.9e-07 Score=98.15 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=114.2
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccc
Q psy3769 6 YQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQ 85 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q 85 (974)
+.=|++|++.|+|||++.++++.+|+.++++++| +|+|+|.-- .| -++-|..++++++++.+.+......
T Consensus 101 ~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g-~p~VlKtr~-gG--YDGkGQ~~i~~~~~~~~~~~~~~~~------ 170 (375)
T COG0026 101 LVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLG-FPAVLKTRR-GG--YDGKGQWRIRSDADLELRAAGLAEG------ 170 (375)
T ss_pred HHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC-CceEEEecc-cc--ccCCCeEEeeCcccchhhHhhhhcc------
Confidence 3448999999999999999999999999999999 999999932 22 2333888899888888765543221
Q ss_pred cCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHHHH
Q psy3769 86 TNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNISK 165 (974)
Q Consensus 86 ~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~~~ 165 (974)
. ..++|+|+++.+|+.+=+.+++ .+-+..+- -+|.+. .+.|.+..+.|.
T Consensus 171 -----~---~~vlE~fV~F~~EiSvi~aR~~--~G~~~~yP-----~~eN~h---~~gIl~~siaPa------------- 219 (375)
T COG0026 171 -----G---VPVLEEFVPFEREISVIVARSN--DGEVAFYP-----VAENVH---RNGILRTSIAPA------------- 219 (375)
T ss_pred -----C---ceeEEeecccceEEEEEEEEcC--CCCEEEec-----ccceee---ecCEEEEEEecC-------------
Confidence 1 1289999999999777766664 33333332 234443 456888888883
Q ss_pred HCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEE
Q psy3769 166 KISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIIS 211 (974)
Q Consensus 166 ~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~a 211 (974)
.++....++..+++.++.+-+.=.++.-+| ++++.||++++
T Consensus 220 --~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE---~Fv~~dg~llv 260 (375)
T COG0026 220 --RIPDDLQAQAEEMAKKIAEELDYVGVLAVE---FFVTPDGELLV 260 (375)
T ss_pred --cCCHHHHHHHHHHHHHHHHHcCceEEEEEE---EEEECCCcEEE
Confidence 234444556677777777766666788899 89999985543
No 99
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=98.64 E-value=2.1e-07 Score=104.59 Aligned_cols=99 Identities=29% Similarity=0.318 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccc
Q psy3769 6 YQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQ 85 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q 85 (974)
.-.|+.|++.|+|+| +.++++.+|+.+.++++| +||+|||-...||. |..++.|.+|+.+.....+..
T Consensus 118 ~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig-~PvIVrP~~~lGG~----G~~i~~n~eel~~~~~~~l~~------ 185 (400)
T COG0458 118 KLFKEAMREIGIPVP-SRIAHSVEEADEIADEIG-YPVIVKPSFGLGGS----GGGIAYNEEELEEIIEEGLRA------ 185 (400)
T ss_pred HHHHHHHHHcCCCCC-ccccccHHHHhhhHhhcC-CCEEEecCcCCCCC----ceeEEeCHHHHHHHHHhcccc------
Confidence 357899999999999 779999999999999999 99999996655444 666789999999987776543
Q ss_pred cCCCCCceeEEEEEEEeccceeEEEEEEEeccCCce
Q psy3769 86 TNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNI 121 (974)
Q Consensus 86 ~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~p 121 (974)
.+++.+|+||++..++|+...+.+|.+..+.
T Consensus 186 -----s~~~~vl~eesi~G~ke~e~ev~rd~~~n~i 216 (400)
T COG0458 186 -----SPVEEVLIEESIIGWKEFEYEVVRDGKDNCI 216 (400)
T ss_pred -----CccccceeeeeecCceEEEEEEEEeCCCCEE
Confidence 4467999999999999999999999876644
No 100
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.63 E-value=5.9e-07 Score=106.50 Aligned_cols=101 Identities=24% Similarity=0.265 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHcCCCCC-CceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHH-----HH----HHH
Q psy3769 4 YEYQGKEILRKFNVTIP-KGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQ-----VE----KYT 73 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp-~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee-----~~----~a~ 73 (974)
+...+|++|+++|||+| ++..+++.+|+.++++.. +|+||||.-..||| ||.+++|+++ ++ +++
T Consensus 109 dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~--~PvVVKP~~~aggk----GV~iv~~~~e~~~~~~~ea~~~a~ 182 (486)
T PRK05784 109 SKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG--GSVAIKPARQAGGK----GVKVIADLQAYLSQEKREALTKSV 182 (486)
T ss_pred CHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc--CCEEEeeCCCCCCC----CEEEECChhHhcchhHHHHHHHHH
Confidence 34678999999999997 788889999999888665 49999998777777 9999999873 33 334
Q ss_pred HHHHhccccccccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 74 KKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 74 ~~~l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
++++.... + .+..-..|+|||++. |.|+.+.+..|..
T Consensus 183 ~~~~~~~~---~---~g~~~~~VlIEEfL~-G~E~SV~al~dG~ 219 (486)
T PRK05784 183 NDIKEGSA---Y---YKDVEPKILVEEKVD-GVEYTLQVLTDGE 219 (486)
T ss_pred HHHHHhHh---h---ccCCCCeEEEEEccC-CeEEEEEEEECCC
Confidence 45543211 1 223335799999999 7899999998753
No 101
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=98.63 E-value=9.9e-07 Score=102.46 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=114.9
Q ss_pred HHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccc
Q psy3769 5 EYQGKEILRKFNVTIPKGIL--CMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~--~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~ 82 (974)
...+|+++++.|+|+|++.- ..+.+|+.+.++++| |||+|||..-.||| |++++++.+|+.+++..+.+....
T Consensus 116 K~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iG-yPVivKa~~GgGg~----G~r~v~~~~el~~a~~~~~~ea~~ 190 (449)
T COG0439 116 KITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIG-YPVIVKAAAGGGGR----GMRVVRNEEELEAAFEAARGEAEA 190 (449)
T ss_pred HHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcC-CCEEEEECCCCCcc----cEEEECCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999873 466789999999999 99999997656666 999999999999999988765320
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHH
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDN 162 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~ 162 (974)
. .+. ..+++|+++...+-.-+-+.-|.. +.. +-. |.-+. .+..++.+. ....|..
T Consensus 191 --~---fg~--~~v~iEk~i~~~rhievqv~gD~~-g~~-i~l---~eRdc-siqrr~qkv---ieeapsp--------- 245 (449)
T COG0439 191 --A---FGN--PRVYLEKFIEGPRHIEVQVLGDGH-GNV-IHL---GERDC-SIQRRHQKV---IEEAPSP--------- 245 (449)
T ss_pred --h---cCC--CcEEeeeeccCCceEEEEEEEcCc-ccE-EEE---EeccC-CCcCCccce---eeecCCC---------
Confidence 0 122 249999999866555577777753 222 211 11111 112222222 2233321
Q ss_pred HHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 163 ISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 163 ~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
.++++..+.+.+..+++.+...-..+..+| ++.+.+|+++.+..-
T Consensus 246 -----~~~~e~r~~i~~~a~~a~~~~gY~gagtvE---fl~~~~~~~yfiEmN 290 (449)
T COG0439 246 -----LLTEELREKIGEAAVRAAKLIGYRGAGTVE---FLYDSNGEFYFIEMN 290 (449)
T ss_pred -----CCCHHHHHHHHHHHHHHHHhcCCCCCceEE---EEEeCCCCEEEEEEe
Confidence 133455667777778888776666677777 666655667665543
No 102
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.61 E-value=1e-06 Score=114.44 Aligned_cols=102 Identities=21% Similarity=0.300 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccc
Q psy3769 4 YEYQGKEILRKFNVTIPK-GILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~-~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~ 82 (974)
+.+.+|++|+++|||+|+ +.++++.+|+.++++++| ||+|+||.-..||+ ||.+++|.+|+++++++......
T Consensus 114 DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~ig-yPvVVKP~~ggGG~----GV~iv~~~eEL~~a~~~~~~~~~- 187 (1201)
T TIGR02712 114 LKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEIG-YPVMLKSTAGGGGI----GMQKCDSAAELAEAFETVKRLGE- 187 (1201)
T ss_pred CHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhcC-CeEEEEECCCCCCC----CEEEECCHHHHHHHHHHHHHHHH-
Confidence 456789999999999866 667899999999999999 99999996545544 99999999999998887643211
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
.. .+ -.+++||||++.++|+.+.+..|..
T Consensus 188 -~~---f~--~~~vlVEefI~g~~eveV~v~~Dg~ 216 (1201)
T TIGR02712 188 -SF---FG--DAGVFLERFVENARHVEVQIFGDGK 216 (1201)
T ss_pred -Hh---cC--CCcEEEEecCCCCEEEEEEEEECCC
Confidence 00 11 1358999999988999999999864
No 103
>PRK07206 hypothetical protein; Provisional
Probab=98.55 E-value=1.9e-06 Score=100.81 Aligned_cols=100 Identities=21% Similarity=0.200 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCC---cEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGN---SWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQ 80 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~---PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~ 80 (974)
+.+..|++|+++|||+|++..+++.+|+.++++++| + |+||||--..|++ ||.+++|++|++++++++++..
T Consensus 108 dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~g-~~~~P~VvKP~~g~gs~----gv~~v~~~~el~~~~~~~~~~~ 182 (416)
T PRK07206 108 NKAEMINALAEAGLPAARQINTADWEEAEAWLRENG-LIDRPVVIKPLESAGSD----GVFICPAKGDWKHAFNAILGKA 182 (416)
T ss_pred CHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHhcC-CCCCCEEEeCCCCCCCC----CEEEeCCHHHHHHHHHHHHhcc
Confidence 356678999999999999999999999999999988 7 9999995444444 9999999999999999886532
Q ss_pred ccccccCCCCCceeEEEEEEEeccceeEEEEEEEe
Q psy3769 81 LITSQTNQEGENVFCVLIEEYIDIKKELYISFMTD 115 (974)
Q Consensus 81 ~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~D 115 (974)
. + .+..-..++|||+++ +.|+.+....+
T Consensus 183 ~---~---~~~~~~~~lvEe~i~-G~E~sv~~~~~ 210 (416)
T PRK07206 183 N---K---LGLVNETVLVQEYLI-GTEYVVNFVSL 210 (416)
T ss_pred c---c---CCCCCCeEEEEEccc-cEEEEEEEEEE
Confidence 1 1 122235799999998 78999887754
No 104
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.53 E-value=2.7e-06 Score=109.55 Aligned_cols=102 Identities=21% Similarity=0.284 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGI--LCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~--~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+-+.+|++++++|||+|++. .+.+.+|+.++++++| ||+++||..-.||| |++++++++|+++++++......
T Consensus 115 DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iG-yPvIVKP~~GGGGr----G~riV~~~eEL~~a~~~a~~ea~ 189 (1143)
T TIGR01235 115 DKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIG-YPVIIKASWGGGGR----GMRVVRSEADVADAFQRAKSEAK 189 (1143)
T ss_pred CHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcC-CCEEEEECCCCCCC----ccEEeCCHHHHHHHHHHHHHHHH
Confidence 35678999999999999875 5689999999999999 99999994433444 89999999999999887654321
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
. ..+ ...++||++++..+|+.+.+..|..
T Consensus 190 ---~--~fg--~~~vlIEefI~g~reIeVqVlgD~~ 218 (1143)
T TIGR01235 190 ---A--AFG--NDEVYVEKLIERPRHIEVQLLGDKH 218 (1143)
T ss_pred ---H--hcC--CCcEEEEEcCCCCeEEEEEEEEeCC
Confidence 0 011 1368999999888999999999963
No 105
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.51 E-value=1.8e-06 Score=96.54 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+.+.+|++|+ .|||+|++..+++.. .++.++ ||+|+||..-.+++ ||.+++|.+|+.+++++.+...
T Consensus 95 DK~~~k~~l~-~~ip~p~~~~~~~~~----~~~~l~-~P~vvKP~~g~~s~----Gv~~v~~~~el~~~~~~~~~~~--- 161 (299)
T PRK14571 95 DKLLTYRFLK-GTVEIPDFVEIKEFM----KTSPLG-YPCVVKPRREGSSI----GVFICESDEEFQHALKEDLPRY--- 161 (299)
T ss_pred CHHHHHHHHh-cCCCCCCEEEEechh----hhhhcC-CCEEEecCCCCCcC----CEEEECCHHHHHHHHHHHHhhC---
Confidence 4566788898 489999999886543 235688 99999995333323 8999999999999887765321
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
..++||||++ ++|+.+++..+.. .+.++.. +|.... +.+..+......+.+. .
T Consensus 162 ----------~~vlVEeyI~-G~E~sv~vl~~~~--~~~vl~~------~e~~~~---~~~~~~~~k~~~g~~~-----~ 214 (299)
T PRK14571 162 ----------GSVIVQEYIP-GREMTVSILETEK--GFEVLPI------LELRPK---RRFYDYVAKYTKGETE-----F 214 (299)
T ss_pred ----------CcEEEEcccc-ceEEEEEEEcCCC--Ceeeece------EEEecC---CCccccccccCCCCee-----E
Confidence 3689999998 8999999998742 2211111 111100 0000000000000000 0
Q ss_pred HHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 164 SKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 164 ~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
..+..++++..+++.+++.++++.+...+..-+| ++++ +|++++++.
T Consensus 215 ~~p~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD---~~~~-~~~~~viEi 261 (299)
T PRK14571 215 ILPAPLNPEEERLVKETALKAFVEAGCRGFGRVD---GIFS-DGRFYFLEI 261 (299)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEE---EEEE-CCcEEEEEe
Confidence 0122356667788899999999988777787888 6665 455776654
No 106
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.51 E-value=3.3e-06 Score=109.17 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGI--LCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQL 81 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~--~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~ 81 (974)
+-+.+|++++++|||+|++. .+.+.+|+.++++++| ||+++||-.-.||| ||+++++++|+++++++......
T Consensus 119 DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iG-yPvVVKP~~GgGGr----Gv~vV~~~eEL~~a~~~a~~ea~ 193 (1146)
T PRK12999 119 DKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIG-YPIMLKASAGGGGR----GMRIVRSEEELEEAFERAKREAK 193 (1146)
T ss_pred CHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhC-CCEEEEECCCCCCC----CeEEeCCHHHHHHHHHHHHHHHH
Confidence 35678999999999998766 4899999999999999 99999995444444 99999999999999887654321
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
. ..+ -..++||++++..+|+.+.+..|..
T Consensus 194 ---~--~fg--~~~vlVEefI~g~~~ieVqvl~D~~ 222 (1146)
T PRK12999 194 ---A--AFG--NDEVYLEKYVENPRHIEVQILGDKH 222 (1146)
T ss_pred ---h--hcC--CCcEEEecCCCCCeEEEEEEEEECC
Confidence 0 011 1368999999977888888888853
No 107
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.50 E-value=3.6e-06 Score=108.97 Aligned_cols=95 Identities=22% Similarity=0.389 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccc
Q psy3769 6 YQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQ 85 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q 85 (974)
+..+++|+++|||+|++..+++.+|+.++++++| ||+++||....||+ ||.++.|++|+++++++......
T Consensus 671 ~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~ig-yPvIVKP~~~~Gg~----gv~iv~~~eeL~~~l~~a~~~s~---- 741 (1050)
T TIGR01369 671 EKFSELLDELGIPQPKWKTATSVEEAVEFASEIG-YPVLVRPSYVLGGR----AMEIVYNEEELRRYLEEAVEVSP---- 741 (1050)
T ss_pred HHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcC-CCEEEEECCCCCCC----CeEEECCHHHHHHHHHHHHHhCC----
Confidence 4568999999999999999999999999999999 99999996555555 89999999999999988754211
Q ss_pred cCCCCCceeEEEEEEEeccceeEEEEEEEec
Q psy3769 86 TNQEGENVFCVLIEEYIDIKKELYISFMTDR 116 (974)
Q Consensus 86 ~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr 116 (974)
-..++||||++.++|+.+.+..|.
T Consensus 742 -------~~~vlVeefI~~G~E~~Vd~l~d~ 765 (1050)
T TIGR01369 742 -------EHPVLIDKYLEDAVEVDVDAVSDG 765 (1050)
T ss_pred -------CCCEEEeecCCCCeEEEEEEEEeC
Confidence 135899999998999999999985
No 108
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.46 E-value=1.9e-06 Score=100.60 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHH--cCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhc
Q psy3769 4 YEYQGKEILRKFNVTIPKGIL--CMNVDEAIKAAKK--IGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGM 79 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~--~~s~eea~~~a~~--ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~ 79 (974)
+-+.+|++++++|||||++.. +.+.+++.+.+++ +| +|+||||. .||.| -|+.++++.+|++++++++++.
T Consensus 142 DK~~tK~l~~~aGIPtpp~~~~~~~~~eel~~~~~~~~IG-yPvVVKP~--~GGSS--~GV~~Vkn~eELe~a~~~~~~~ 216 (493)
T PRK06524 142 SKIVTTRLANEAGVPSVPHVLGRVDSYDELSALAHGAGLG-DDLVVQTP--YGDSG--STTFFVRGQRDWDKYAGGIVGQ 216 (493)
T ss_pred CHHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHhccCC-CcEEEEEC--CCCCC--cCEEEeCCHHHHHHHHHHhcCC
Confidence 456789999999999999988 4677777777765 99 99999995 33232 3899999999999988776431
Q ss_pred cccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeee--ccCCCCcceeeccccCCcceEEEEeCCCCCCCH
Q psy3769 80 QLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFM--GSNKGGMDIEIISKNSPELLYKTIIDPLIGLTK 157 (974)
Q Consensus 80 ~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii--~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~ 157 (974)
..++||++++ ++|+.+.+.+|.. +..+.. ....|-..+.... .......+.|
T Consensus 217 --------------~~viVEe~I~-GrEitVev~vd~d-G~Vv~~~~~e~vg~~Ei~~yr----~G~~~~~i~P------ 270 (493)
T PRK06524 217 --------------PEIKVMKRIR-NVEVCIEACVTRH-GTVIGPAMTSLVGYPELTPYR----GGWCGNDIWP------ 270 (493)
T ss_pred --------------CCEEEEeccC-cEEEEEEEEEeCC-CCEEeccccccccceEEEEcc----CCeEEEEEcc------
Confidence 3579999997 8999998888853 322110 0101111111000 0111011222
Q ss_pred HHHHHHHHHCCCChhhHHHHHHHHHHHHhhcc---cCCeeEEeeceeEEcc-CCcEEEEEEEEeeeC
Q psy3769 158 NNIDNISKKISIPKNSLINFYEEIQNIYKSYW---ETDSLLLEINPLVINS-KNKIISLDIKFNFDT 220 (974)
Q Consensus 158 ~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~---~~d~~~lEINPL~v~~-~g~~~alDaki~ldd 220 (974)
..++++..+++.+++.++++.+. ..++..+| +++++ +|+++.++.--++.+
T Consensus 271 ---------A~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVD---Ffvd~ddgevYfnEINPR~~G 325 (493)
T PRK06524 271 ---------GALPPAQTRKAREMVRKLGDVLSREGYRGYFEVD---LLHDLDADELYLGEVNPRLSG 325 (493)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEE---EEEECCCCeEEEEEEeCCccc
Confidence 23556667778888888888762 23455566 55553 345555554444433
No 109
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.45 E-value=2.8e-06 Score=108.42 Aligned_cols=165 Identities=12% Similarity=0.147 Sum_probs=109.6
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITS 84 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~ 84 (974)
.+..|++|+++|||+|++..+++.+|+.+++++++ ||+||||---.|++ ||.+++|++|+.++++++....
T Consensus 108 K~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~~-~PvVVKP~~g~gS~----GV~~v~~~~el~~a~~~~~~~~---- 178 (887)
T PRK02186 108 KKRLARTLRDHGIDVPRTHALALRAVALDALDGLT-YPVVVKPRMGSGSV----GVRLCASVAEAAAHCAALRRAG---- 178 (887)
T ss_pred HHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhCC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHHHHHhcC----
Confidence 46678999999999999999999999999999998 99999995434444 8999999999999988875421
Q ss_pred ccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHHH
Q psy3769 85 QTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNIS 164 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~~ 164 (974)
...++||||++ |.|+.+.+..+.. +..++..+ +......|.-+..-...|
T Consensus 179 --------~~~~lvEEfI~-G~E~sVe~i~~~g-~~~i~~i~-------~k~~~~~~~~ve~g~~~P------------- 228 (887)
T PRK02186 179 --------TRAALVQAYVE-GDEYSVETLTVAR-GHQVLGIT-------RKHLGPPPHFVEIGHDFP------------- 228 (887)
T ss_pred --------CCcEEEeeccc-CCcEEEEEEEECC-cEEEEEEE-------eeecCCCCCeEEeccccC-------------
Confidence 14689999998 6899999887742 22222111 000001111000001111
Q ss_pred HHCCCChhhHHHHHHHHHHHHhhccc-CCeeEEeeceeEEccCCcEEEEEE
Q psy3769 165 KKISIPKNSLINFYEEIQNIYKSYWE-TDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 165 ~~lg~~~~~~~~l~~~l~~L~~l~~~-~d~~~lEINPL~v~~~g~~~alDa 214 (974)
..+++...+++.+.+.++.+.+.- .++.-+| ++++++| ++.++.
T Consensus 229 --~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE---~~~t~~g-~~liEI 273 (887)
T PRK02186 229 --APLSAPQRERIVRTVLRALDAVGYAFGPAHTE---LRVRGDT-VVIIEI 273 (887)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHcCCCcCceEEE---EEEECCC-EEEEEE
Confidence 123445566777777777776654 3566677 6666655 655544
No 110
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.44 E-value=6.6e-06 Score=106.91 Aligned_cols=97 Identities=21% Similarity=0.377 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITS 84 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~ 84 (974)
-+..+++|+++|||+|++..+++.+|+.++++++| ||+|+||....||+ ||.+++|++|+++++++......
T Consensus 670 K~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~ig-yPvvVKP~~~~Gg~----Gv~iv~~~eeL~~~~~~a~~~s~--- 741 (1066)
T PRK05294 670 RERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIG-YPVLVRPSYVLGGR----AMEIVYDEEELERYMREAVKVSP--- 741 (1066)
T ss_pred HHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcC-CCeEEEeCCCCCCC----cEEEECCHHHHHHHHHHHHhhCC---
Confidence 34568999999999999999999999999999999 99999996555555 89999999999999888654211
Q ss_pred ccCCCCCceeEEEEEEEeccceeEEEEEEEecc
Q psy3769 85 QTNQEGENVFCVLIEEYIDIKKELYISFMTDRV 117 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~ 117 (974)
-..++|||+++..+|+.+.+..|..
T Consensus 742 --------~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 742 --------DHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred --------CCcEEEEecCCCCEEEEEEEEecCC
Confidence 1358999999966799999988853
No 111
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.43 E-value=4e-06 Score=93.85 Aligned_cols=96 Identities=19% Similarity=0.326 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+-+.++++|+++|||+|++.++.+++++.+++++++++|+|+||-.-.+|+ ||.++++.+++..+.+.+....
T Consensus 99 dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~----GV~~v~~~~~~~~~~~~~~~~~--- 171 (300)
T PRK10446 99 DKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGI----GVVLAETRQAAESVIDAFRGLN--- 171 (300)
T ss_pred cHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHhCCCCEEEEECCCCCcc----cEEEEcCHHHHHHHHHHHHhcC---
Confidence 346789999999999999999999999888888873389999994433333 8999999998887666542211
Q ss_pred cccCCCCCceeEEEEEEEec--cceeEEEEEEEec
Q psy3769 84 SQTNQEGENVFCVLIEEYID--IKKELYISFMTDR 116 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~--~~~E~ylgi~~Dr 116 (974)
..++||||++ .++|+.+.+.-++
T Consensus 172 ----------~~~lvQe~I~~~~g~d~rv~vig~~ 196 (300)
T PRK10446 172 ----------AHILVQEYIKEAQGCDIRCLVVGDE 196 (300)
T ss_pred ----------CCEEEEeeeccCCCceEEEEEECCE
Confidence 2589999996 4799999987543
No 112
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.42 E-value=4e-06 Score=90.39 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=105.9
Q ss_pred HcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccCCCCCce
Q psy3769 14 KFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENV 93 (974)
Q Consensus 14 ~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~~~ 93 (974)
+.|+||.++.++.|.+|..++++++| ||+|+||-..+.|||. .+++++++++++|+....... ..-
T Consensus 124 eLglpTs~Y~fa~s~~e~~~a~~~iG-fPcvvKPvMSSSGkGq----svv~~~e~ve~AW~~A~~g~R---------~~~ 189 (394)
T COG0027 124 ELGLPTSKYRFADSLEELRAAVEKIG-FPCVVKPVMSSSGKGQ----SVVRSPEDVEKAWEYAQQGGR---------GGS 189 (394)
T ss_pred HhCCCCccccccccHHHHHHHHHHcC-CCeecccccccCCCCc----eeecCHHHHHHHHHHHHhcCC---------CCC
Confidence 35999999999999999999999999 9999999777766744 589999999999998653321 223
Q ss_pred eEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHHHHHCCCChhh
Q psy3769 94 FCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNISKKISIPKNS 173 (974)
Q Consensus 94 ~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~~~~lg~~~~~ 173 (974)
..|+||+++++..|+.+=..+. ..+.-.++.+-| .++++. +-++-.++...+...
T Consensus 190 ~RVIVE~fv~fd~EiTlLtvr~--~~~~~~Fc~PIG--------Hrq~dg---------------dY~ESWQP~~mS~~a 244 (394)
T COG0027 190 GRVIVEEFVKFDFEITLLTVRA--VDGTGSFCAPIG--------HRQEDG---------------DYRESWQPQEMSEAA 244 (394)
T ss_pred CcEEEEEEecceEEEEEEEEEE--ecCCCCcCCCcc--------cccCCC---------------ChhcccCccccCHHH
Confidence 5899999999988866644433 222211111111 111111 011112223455667
Q ss_pred HHHHHHHHHHHHhhcccCCeeEEeeceeEEccCC
Q psy3769 174 LINFYEEIQNIYKSYWETDSLLLEINPLVINSKN 207 (974)
Q Consensus 174 ~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g 207 (974)
+++...+..++-+.+..+++.-+| |+++.|.
T Consensus 245 l~~A~~IA~~vt~aLGG~GiFGVE---lfv~gDe 275 (394)
T COG0027 245 LEEAQSIAKRVTDALGGRGLFGVE---LFVKGDE 275 (394)
T ss_pred HHHHHHHHHHHHHhhcCccceeEE---EEEeCCE
Confidence 788888888888888888999999 8887764
No 113
>KOG0237|consensus
Probab=98.37 E-value=1.4e-06 Score=100.09 Aligned_cols=103 Identities=24% Similarity=0.255 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccccc
Q psy3769 7 QGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQT 86 (974)
Q Consensus 7 ~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~ 86 (974)
=+|++|.+|||||.++..++++++|..+.+..+.+++|+|++-++.|| ||.+.++.+|+-+|.++|+....
T Consensus 111 fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAGK----GViv~~~~~EA~eAv~sIl~~~~----- 181 (788)
T KOG0237|consen 111 FSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGK----GVIVAKSKEEAFEAVDSILVKKV----- 181 (788)
T ss_pred HHHHHHHhcCCCcceeeeeCCHHHHHHHHHhCCCcceEEeecccccCC----ceEeeccHHHHHHHHHHHHhhhh-----
Confidence 379999999999999999999999999999988778999999999888 99999999999999999987654
Q ss_pred CCCCCceeEEEEEEEeccceeEEEEEEEeccCCce
Q psy3769 87 NQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNI 121 (974)
Q Consensus 87 ~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~p 121 (974)
.|..-+.|.|||+++ +.|+.+=...|...-.|
T Consensus 182 --fg~AG~tvViEE~LE-GeEvS~laftDG~s~~~ 213 (788)
T KOG0237|consen 182 --FGSAGKTVVIEELLE-GEEVSFLAFTDGYSVRP 213 (788)
T ss_pred --hccccceEehhhhcC-cceEEEEEEecCccccc
Confidence 444456889999999 88988877888655545
No 114
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.35 E-value=2.1e-06 Score=106.94 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEE-eCCHHHHHHHHHHHHhcccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKL-AQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l-~~s~ee~~~a~~~~l~~~~~ 82 (974)
+...+|++|+++|||||++..+.+.+++.++++++| ||+|+||..-.+| .||.+ ++|++|++++++.+....
T Consensus 214 DK~~tk~lL~~~GIPvP~~~~v~s~~~a~~~a~~iG-~PvVVKP~~G~~G----~GV~~~v~~~~el~~a~~~a~~~~-- 286 (727)
T PRK14016 214 DKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIG-YPVVVKPLDGNHG----RGVTVNITTREEIEAAYAVASKES-- 286 (727)
T ss_pred CHHHHHHHHHHCCcCCCCeeEeCCHHHHHHHHHHcC-CCEEEEECCCCCC----CceEEecCCHHHHHHHHHHHHHhC--
Confidence 346789999999999999999999999999999999 9999999532222 38998 899999999988764321
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEE
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMT 114 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~ 114 (974)
..++||||++ ++|+.+.+.-
T Consensus 287 -----------~~viVEe~I~-G~d~Rv~Vvg 306 (727)
T PRK14016 287 -----------SDVIVERYIP-GKDHRLLVVG 306 (727)
T ss_pred -----------CeEEEEEecC-CceEEEEEEC
Confidence 4689999998 7898876643
No 115
>KOG1254|consensus
Probab=98.34 E-value=1e-07 Score=107.14 Aligned_cols=256 Identities=17% Similarity=0.109 Sum_probs=173.5
Q ss_pred CcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccCCCCCceeEEEEEEEecc------ceeEEEEEEE
Q psy3769 41 NSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDI------KKELYISFMT 114 (974)
Q Consensus 41 ~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~~~~~vLVee~v~~------~~E~ylgi~~ 114 (974)
...|.|++.+.+.|++.|-|.+..+-.+..+.-+.+.+... ..+ +. -.+.+-+.||+++++ -.|.|+.+..
T Consensus 80 ~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~-k~~-~i-iGPaTvggVePg~fkignt~g~~dnil~~kl 156 (600)
T KOG1254|consen 80 TRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEV-KGV-GI-IGPATVGGVEPGVFKIGNTGGMMDNILNSKL 156 (600)
T ss_pred hhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhcccc-ccc-eE-EeeeeeccccCCccccCCCCcchhhhhhhcc
Confidence 34688998888889999999996555555555555544332 001 11 134577889999876 4899999999
Q ss_pred eccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCC----CHHHHHHHHHHCCCChhhHHHHHHHHHHHHhhccc
Q psy3769 115 DRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGL----TKNNIDNISKKISIPKNSLINFYEEIQNIYKSYWE 190 (974)
Q Consensus 115 Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl----~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~ 190 (974)
+|. + -++.+|..|||++|+..+.+ +...-|.+++ +.+-+..++..+ +....+.+.++++.|+.++.+
T Consensus 157 yR~-G-sv~~vS~sGGmsnE~nn~is-----rtt~g~~egiaiggd~~pgSTl~dhi--~r~q~~~~vk~Iv~Lgevgg~ 227 (600)
T KOG1254|consen 157 YRP-G-SVIYVSRSGGMSNELNNIIS-----RTTDGPYEGIAIGGDRYPGSTLIDHI--PREQHDPLVKFIVVLGEVGGD 227 (600)
T ss_pred cCC-c-cEEEEecCCCcchhhhhhhh-----heeccceeeeeccCCCccCchHhhhh--hhhhccChhheEEeehhhccc
Confidence 983 3 46899999999999986644 2222232221 112233444443 345566789999999999999
Q ss_pred CCeeEEeec-------eeEEccCCc---EEEEEEEEeeeCccccCCcc-ccc----c-------c---------------
Q psy3769 191 TDSLLLEIN-------PLVINSKNK---IISLDIKFNFDTNALFRHPE-IIS----Y-------Q--------------- 233 (974)
Q Consensus 191 ~d~~~lEIN-------PL~v~~~g~---~~alDaki~ldd~a~~r~~~-~~~----~-------~--------------- 233 (974)
.+.+.+|+| |+++-.-|. ++-+|.....|+.+.|..-+ |.. + +
T Consensus 228 ~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e 307 (600)
T KOG1254|consen 228 EEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADIQETYE 307 (600)
T ss_pred ceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhhhhccchh
Confidence 999999999 998855442 67789999999987763321 210 0 0
Q ss_pred --------cchhh-hcccCChhhhhhccCCCeEeecCCeEEEEecCc-chhhHHHHHHHhcC--CCCceeeecCCCCCHH
Q psy3769 234 --------YAHKK-YINKIDLMEIEASKFDLTYIPLNGNIGCLVNGA-GLAMATMDTIKLFG--GEPANFLDIGGGATIK 301 (974)
Q Consensus 234 --------~~~~~-~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGa-Glam~t~D~i~~~g--g~panfld~GG~a~~~ 301 (974)
-|.+| ++--++.+---| ..|..++-.|+|||++.|. |..+.+.|+....| -+-+|+-.+||-....
T Consensus 308 ~lv~~Grvvp~~Ev~pp~lp~d~saa--lklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~ 385 (600)
T KOG1254|consen 308 FLVPFGRVVPKTEVPPPGLPEDTSAA--LKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSLLWFQR 385 (600)
T ss_pred cccccceecCcccCCCCCCChhhhhH--hhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEccccccc
Confidence 01111 222223332223 3455699999999999999 99999999987766 4689999999999988
Q ss_pred HHHHHHHHH
Q psy3769 302 TITEAFKIM 310 (974)
Q Consensus 302 ~v~~a~~~i 310 (974)
++.+..+..
T Consensus 386 ~lp~Ya~kf 394 (600)
T KOG1254|consen 386 RLPQYARKF 394 (600)
T ss_pred cchHHHHHH
Confidence 876654443
No 116
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.34 E-value=1.6e-05 Score=103.22 Aligned_cols=92 Identities=23% Similarity=0.400 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccc
Q psy3769 6 YQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQ 85 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q 85 (974)
+.-+++|+++|||+|++..+++.+|+.++++++| ||+|+||....||| |+.++.|++|+++++++....
T Consensus 672 ~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~ig-yPvVVKP~~~~Gg~----gv~iv~~~eeL~~~l~~~~s~------ 740 (1068)
T PRK12815 672 DRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIG-YPVLIRPSYVIGGQ----GMAVVYDEPALEAYLAENASQ------ 740 (1068)
T ss_pred HHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHHhhcC------
Confidence 4568999999999999999999999999999999 99999996555555 899999999999988876110
Q ss_pred cCCCCCceeEEEEEEEeccceeEEEEEEEec
Q psy3769 86 TNQEGENVFCVLIEEYIDIKKELYISFMTDR 116 (974)
Q Consensus 86 ~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr 116 (974)
...++|||+++ +.|+.+.+..|.
T Consensus 741 -------~~~vlIeefI~-G~E~~Vd~i~dg 763 (1068)
T PRK12815 741 -------LYPILIDQFID-GKEYEVDAISDG 763 (1068)
T ss_pred -------CCCEEEEEeec-CceEEEEEEEcC
Confidence 13589999996 789999998885
No 117
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.34 E-value=1.3e-06 Score=91.12 Aligned_cols=93 Identities=20% Similarity=0.339 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHc-CCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccc
Q psy3769 6 YQGKEILRKFNVTIPKGILCMNVDEAIKAAKKI-GGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITS 84 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~i-g~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~ 84 (974)
.-..++|+++|||+|++.++.+++++.++.+++ + +|+|+||..-+.|+ ||.++++++++.+..+......
T Consensus 5 ~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~~~-~p~ViKp~~g~~G~----gV~~i~~~~~~~~~l~~~~~~~---- 75 (190)
T PF08443_consen 5 LLTLQLLAKAGIPVPETRVTNSPEEAKEFIEELGG-FPVVIKPLRGSSGR----GVFLINSPDELESLLDAFKRLE---- 75 (190)
T ss_dssp HHHHHHHHHTT-----EEEESSHHHHHHHHHHH---SSEEEE-SB-----------EEEESHCHHHHHHH-----T----
T ss_pred HHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcC-CCEEEeeCCCCCCC----EEEEecCHHHHHHHHHHHHhcc----
Confidence 346789999999999999999999999999999 6 89999995444333 8999999999988755432111
Q ss_pred ccCCCCCceeEEEEEEEeccc--eeEEEEEEEec
Q psy3769 85 QTNQEGENVFCVLIEEYIDIK--KELYISFMTDR 116 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~~--~E~ylgi~~Dr 116 (974)
..+++|+|++.. +|+.+-+.-++
T Consensus 76 ---------~~~~~Q~fI~~~~g~d~Rv~Vig~~ 100 (190)
T PF08443_consen 76 ---------NPILVQEFIPKDGGRDLRVYVIGGK 100 (190)
T ss_dssp ---------TT-EEEE----SS---EEEEEETTE
T ss_pred ---------CcceEeccccCCCCcEEEEEEECCE
Confidence 235999999754 47776665443
No 118
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.33 E-value=2.2e-06 Score=108.65 Aligned_cols=93 Identities=22% Similarity=0.333 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEE-eCCHHHHHHHHHHHHhcccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKL-AQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l-~~s~ee~~~a~~~~l~~~~~ 82 (974)
+.+.+|++|+++|||||++..+++.+|+.++++++| +|+|+||....+| .||.+ ++|++|++++++.+....
T Consensus 213 DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~ig-~PvVVKP~~g~~G----~GV~l~v~s~~el~~a~~~a~~~~-- 285 (864)
T TIGR02068 213 DKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLG-YPVVIKPYDGNHG----RGVTINILTRDEIESAYEAAVEES-- 285 (864)
T ss_pred CHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcC-CCEEEEECCCCCc----cCEEEEeCCHHHHHHHHHHHHhhC--
Confidence 356789999999999999999999999999999999 9999999643333 38998 899999999988764321
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEEe
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMTD 115 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~D 115 (974)
..++||+|++ ++|+.+.+.-+
T Consensus 286 -----------~~vlVEefI~-G~e~rvlVv~~ 306 (864)
T TIGR02068 286 -----------SGVIVERFIT-GRDHRLLVVGG 306 (864)
T ss_pred -----------CcEEEEEecc-CCEEEEEEECC
Confidence 4689999998 79998866533
No 119
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.32 E-value=1.5e-05 Score=88.03 Aligned_cols=95 Identities=23% Similarity=0.308 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITS 84 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~ 84 (974)
....+++|+++|||+|++..+.+.+++.++.+++| +|+|+||..-++|+ ||.++++.+++.++.+.... .
T Consensus 88 K~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~-~P~vvKP~~g~~g~----gv~~v~~~~~l~~~~~~~~~--~--- 157 (280)
T TIGR02144 88 KIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALG-YPVVLKPVIGSWGR----LVALIRDKDELESLLEHKEV--L--- 157 (280)
T ss_pred HHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcC-CCEEEEECcCCCcC----CEEEECCHHHHHHHHHHHHh--h---
Confidence 45578899999999999999999999988888898 89999996544444 79999999998876543211 1
Q ss_pred ccCCCCCceeEEEEEEEecc-ceeEEEEEE
Q psy3769 85 QTNQEGENVFCVLIEEYIDI-KKELYISFM 113 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~-~~E~ylgi~ 113 (974)
.+..-..+++||+++. ++|+.+.+.
T Consensus 158 ----~~~~~~~~ivQefI~~~~~d~~v~vi 183 (280)
T TIGR02144 158 ----GGSQHKLFYIQEYINKPGRDIRVFVI 183 (280)
T ss_pred ----cCCcCCeEEEEcccCCCCCceEEEEE
Confidence 0011235899999974 677766664
No 120
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.28 E-value=2.4e-05 Score=86.00 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+.+..+++|+++|||+|++..+.+.+++.+..++++ +|+|+||..-++|+ ||.++++.+++.++++.+....
T Consensus 88 dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~-~p~vvKP~~g~~g~----gv~~i~~~~~l~~~~~~~~~~~--- 159 (277)
T TIGR00768 88 DKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIG-FPVVLKPVFGSWGR----LVSLARDKQAAETLLEHFEQLN--- 159 (277)
T ss_pred hHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcC-CCEEEEECcCCCCC----ceEEEcCHHHHHHHHHHHHHhc---
Confidence 345678999999999999999999999999999998 89999996544444 8999999999988766542211
Q ss_pred cccCCCCCceeEEEEEEEeccc
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIK 105 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~ 105 (974)
..-+.+++||+++..
T Consensus 160 -------~~~~~~lvQe~I~~~ 174 (277)
T TIGR00768 160 -------GPQNLFYVQEYIKKP 174 (277)
T ss_pred -------ccCCcEEEEeeecCC
Confidence 011468999999843
No 121
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.28 E-value=2.2e-05 Score=90.77 Aligned_cols=172 Identities=19% Similarity=0.290 Sum_probs=122.9
Q ss_pred HHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 6 YQGKEILRKFNVTIPKGIL--CMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~--~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
-.||.++.+.|+|+.+++. ..+.+++...|+++| |||.+|+. +||-|| |.+++.+++|+.++++.......
T Consensus 117 ~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiG-yPVlIKAs--aGGGGK--GMRvv~~~~e~~e~l~sarrEA~-- 189 (645)
T COG4770 117 IAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIG-YPVLIKAS--AGGGGK--GMRVVETPEEFAEALESARREAK-- 189 (645)
T ss_pred HHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcC-CcEEEEec--cCCCCC--ceEeecCHHHHHHHHHHHHHHHH--
Confidence 4799999999999988765 678999999999999 99999995 444444 99999999999998877654322
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
...| -..++||+|+..-+-+-+-+.-|+ ++..|.++- =-+. +.+++ +|+... .|.-
T Consensus 190 ---asFG--ddrv~iEkyl~~PRHIEiQV~aD~-HGNvv~LgE--RdCS---lQRRh-QKVIEE--APaP---------- 245 (645)
T COG4770 190 ---ASFG--DDRVFIEKYLDKPRHIEIQVFADQ-HGNVVHLGE--RDCS---LQRRH-QKVIEE--APAP---------- 245 (645)
T ss_pred ---hhcC--CceEehhhhcCCCceEEEEEEecC-CCCEEEeec--cccc---hhhhc-chhhhc--CCCC----------
Confidence 1122 257899999977776668888896 565544442 0111 11222 222111 1211
Q ss_pred HHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEE
Q psy3769 164 SKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIK 215 (974)
Q Consensus 164 ~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDak 215 (974)
+++++..+++.+..+++++...=..+-.+| ++++.|+.++.+..-
T Consensus 246 ----~l~~~~R~amg~aAv~~a~avgY~gAGTVE---Fivd~~~~f~FlEMN 290 (645)
T COG4770 246 ----FLTEETREAMGEAAVAAAKAVGYVGAGTVE---FIVDADGNFYFLEMN 290 (645)
T ss_pred ----CCCHHHHHHHHHHHHHHHHhcCCCcCceEE---EEEcCCCcEEEEEee
Confidence 456677888899999999987777788899 899999888777654
No 122
>KOG0238|consensus
Probab=98.25 E-value=2.6e-05 Score=88.62 Aligned_cols=170 Identities=22% Similarity=0.278 Sum_probs=121.9
Q ss_pred HHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 6 YQGKEILRKFNVTIPKG--ILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~--~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
..||+++++.|+|+.++ ....|.+++.+.|.++| |||.+|+. +||-|| |.+++.+++|.++.++..-....
T Consensus 113 ~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIg-yPvMiKa~--~GGGGk--GMria~~~~ef~~~~~~ak~Ea~-- 185 (670)
T KOG0238|consen 113 STSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIG-YPVMIKAT--AGGGGK--GMRIAWSEEEFEEGLESAKQEAA-- 185 (670)
T ss_pred HHHHHHHHhcCCccccCcccccccHHHHHHHHHhcC-CcEEEEec--cCCCCc--ceEeecChHHHHHHHHHHHHHHH--
Confidence 57899999999998776 45688999999999999 99999995 444444 89999999999987765433221
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
+..-..++|+|+|++..+-+-+-+.-|. ++..+ -+. + +|.+ +. .. -+++
T Consensus 186 -----~sFGdd~~llEkfi~npRHiEvQv~gD~-hGnav-~l~-E--------RdCS---vQ----------RR--nQKi 234 (670)
T KOG0238|consen 186 -----KSFGDDGMLLEKFIDNPRHIEVQVFGDK-HGNAV-HLG-E--------RDCS---VQ----------RR--NQKI 234 (670)
T ss_pred -----hhcCcchhhHHHhccCCceEEEEEEecC-CCcEE-Eec-c--------cccc---hh----------hh--hhhh
Confidence 2233468999999987777778888885 55443 222 1 1111 00 00 1234
Q ss_pred HHHC---CCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEE
Q psy3769 164 SKKI---SIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKF 216 (974)
Q Consensus 164 ~~~l---g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki 216 (974)
+.+. +++++...++.+..+++.+...=..+-.+| ++++++++++.+..--
T Consensus 235 iEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVE---Fi~D~~~~FyFmEmNT 287 (670)
T KOG0238|consen 235 IEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVE---FIVDSKDNFYFMEMNT 287 (670)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEE---EEEcCCCcEEEEEeec
Confidence 4444 567788889999999999987766778888 8888888887776543
No 123
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.23 E-value=2.6e-05 Score=88.17 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHH--HHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIK--AAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~--~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~ 82 (974)
-+..+++|+++|||+|++..+++.+|+.+ ..++++ +|+|+||..-.|++ ||.+++|.+|+.+++++.
T Consensus 112 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~-~P~viKP~~g~~s~----gv~~v~~~~el~~~~~~~------ 180 (326)
T PRK12767 112 KWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQ-FPLFVKPRDGSASI----GVFKVNDKEELEFLLEYV------ 180 (326)
T ss_pred HHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccCC-CCEEEEeCCCCCcc----CeEEeCCHHHHHHHHHhC------
Confidence 35678999999999999999999999887 456788 89999995434333 899999999998876542
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeee
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFM 124 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii 124 (974)
..++|||+++ +.|+.+.+..|. .+.++..
T Consensus 181 -----------~~~lvqeyi~-G~e~~v~~~~~~-~G~~~~~ 209 (326)
T PRK12767 181 -----------PNLIIQEFIE-GQEYTVDVLCDL-NGEVISI 209 (326)
T ss_pred -----------CCeEEEeccC-CceEEEEEEEcC-CCCEEEE
Confidence 2679999996 899999999885 3445433
No 124
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.22 E-value=2.7e-05 Score=88.72 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccc
Q psy3769 6 YQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQ 85 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q 85 (974)
+.-|++|+++|||+|+. ++++++ ++ +|+||||.-..||| ||.+++|++|+.+++++++++..
T Consensus 125 ~~~k~~L~~aGIp~p~~--~~~~~~-------i~-~PvIVKp~~g~ggk----Gv~i~~s~~El~~~~~~l~~~~~---- 186 (358)
T PRK13278 125 DKERKLLEEAGIRIPRK--YESPED-------ID-RPVIVKLPGAKGGR----GYFIAKSPEEFKEKIDKLIERGL---- 186 (358)
T ss_pred HHHHHHHHHcCCCCCCE--eCCHHH-------cC-CCEEEEeCCCCCCC----CeEEeCCHHHHHHHHHHHHhccc----
Confidence 45689999999999985 566553 55 89999995444444 99999999999999999876433
Q ss_pred cCCCCCceeEEEEEEEeccceeEEEEEEEec
Q psy3769 86 TNQEGENVFCVLIEEYIDIKKELYISFMTDR 116 (974)
Q Consensus 86 ~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr 116 (974)
.+. .+.++||||+. |.|+++-+...+
T Consensus 187 ---~~~-~~~~iIEEfI~-G~e~sv~~f~s~ 212 (358)
T PRK13278 187 ---ITE-VEEAIIQEYVV-GVPYYFHYFYSP 212 (358)
T ss_pred ---cCC-CCeEEEEecCC-CcEEEEEEEEec
Confidence 112 46799999998 889999988754
No 125
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=98.21 E-value=6.8e-06 Score=100.78 Aligned_cols=94 Identities=20% Similarity=0.259 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCC---HHHHHHHHHHHHhccc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQS---LEQVEKYTKKILGMQL 81 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s---~ee~~~a~~~~l~~~~ 81 (974)
-..+|++|+++|||||++.++++.+++.+....++.+|+||||.-...|+ ||.++++ .+++.++++..+..
T Consensus 476 K~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~----GVsi~~~~~~~eel~~Al~~A~~~-- 549 (737)
T TIGR01435 476 KVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTNYGL----GITIFKNGFTLEDFQEALNIAFSE-- 549 (737)
T ss_pred HHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCcC----CeEEecCcCCHHHHHHHHHHHHhc--
Confidence 45689999999999999999999988887777774389999995433333 8888654 78888887765422
Q ss_pred cccccCCCCCceeEEEEEEEeccceeEEEEEEEec
Q psy3769 82 ITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDR 116 (974)
Q Consensus 82 ~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr 116 (974)
-+.|+|||+++ |+|+.+.+..++
T Consensus 550 -----------~~~VLVEefI~-G~EyRv~VIg~k 572 (737)
T TIGR01435 550 -----------DSSVIIEEFLP-GTEYRFFVLNDK 572 (737)
T ss_pred -----------CCeEEEEeccc-CCEEEEEEECCe
Confidence 14699999998 899999887653
No 126
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.10 E-value=1.3e-05 Score=99.62 Aligned_cols=92 Identities=25% Similarity=0.292 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHc-CCCcEEEEeeeecCcccccCeEEEe---CCHHHHHHHHHHHHhc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKI-GGNSWVIKAQIHAGGRGKCGGIKLA---QSLEQVEKYTKKILGM 79 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~i-g~~PvVvK~qi~~ggrgk~GGV~l~---~s~ee~~~a~~~~l~~ 79 (974)
+-+.+|++|+++|||||++.++.+.+++.+.++++ | +|+||||....+|+ ||.++ .+.+++.++++..+..
T Consensus 488 DK~~tk~lL~~~GIpvP~~~~~~~~e~a~~~~~~~~g-~PvVVKP~~g~~G~----GV~~~~~~~~~eel~~A~~~a~~~ 562 (752)
T PRK02471 488 NKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFAD-KAIVVKPKSTNFGL----GISIFKEPASLEDYEKALEIAFRE 562 (752)
T ss_pred CHHHHHHHHHHCCcCCCCEEEEcCHHHHHHHHHHhcC-CCEEEEECCCCCcC----CeEEecCcCCHHHHHHHHHHHHhc
Confidence 35678999999999999999999999998887775 6 89999996544444 88774 5788888888776432
Q ss_pred cccccccCCCCCceeEEEEEEEeccceeEEEEEEE
Q psy3769 80 QLITSQTNQEGENVFCVLIEEYIDIKKELYISFMT 114 (974)
Q Consensus 80 ~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~ 114 (974)
. ..++|||+++ |+|+.+.+.-
T Consensus 563 ~-------------~~vlVEEfI~-G~E~Rv~Vig 583 (752)
T PRK02471 563 D-------------SSVLVEEFIV-GTEYRFFVLD 583 (752)
T ss_pred C-------------CcEEEEeccc-CCEEEEEEEC
Confidence 1 3689999997 8999987763
No 127
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=98.05 E-value=1.5e-05 Score=79.89 Aligned_cols=102 Identities=30% Similarity=0.408 Sum_probs=85.0
Q ss_pred EeCChhhHHHHHHHHHHc--------------CCceEEEeecCCCCCC---------CCCHHHHHHHhhhCCCccEEEEE
Q psy3769 466 VSRSGTLTYEVVCQLTEL--------------GFGQSSAVGIGGDPIN---------GLKYIDILKLFNEDQNTDAVIMI 522 (974)
Q Consensus 466 vSQSG~~~~~~~~~~~~~--------------g~g~s~~vs~Gn~a~~---------dv~~~d~l~~l~~Dp~t~~I~ly 522 (974)
++.||+++.+.++.+++. +-+.+.++-+|.+++. .....|.++-+.+||+|++|++-
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 578999999999999999 9999999999999854 67899999999999999999999
Q ss_pred EccC-CCchHHHHHHHHh----c---CCCCEEEEecccCCCCCCCccCccccc
Q psy3769 523 GEIG-GLDEIYAANWIKK----N---MKKPVIGFIAGITAPPGKRMGHAGALI 567 (974)
Q Consensus 523 ~E~~-g~~~~~~~~f~~~----~---~~KPVv~lk~Grs~~~g~~~sHTgala 567 (974)
+|.. |..+..+..++++ . +.||||+.-.|+.++.+.++.|-+.|.
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~~~~L~ 133 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQAGALE 133 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHHHHHHH
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHHHHHHH
Confidence 9976 6656666777777 2 578999999999865555566666554
No 128
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.91 E-value=5.4e-05 Score=91.49 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEE-eCCHHHHHHHHHHHHhcccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKL-AQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l-~~s~ee~~~a~~~~l~~~~~ 82 (974)
+-..+|++|++.|||||++..+.+.+++.++++++| |+|+||..-.+|+ ||.+ +++++++.++++......
T Consensus 297 DK~~tk~lL~~aGIpVP~~~~~~~~~~~~~~~~~~G--~vVVKP~~G~~G~----Gv~v~v~~~~eL~~a~~~a~~~~-- 368 (547)
T TIGR03103 297 DKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHG--AVVVKPVRGEQGK----GISVDVRTPDDLEAAIAKARQFC-- 368 (547)
T ss_pred CHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhC--CEEEEECCCCCCc----CeEEecCCHHHHHHHHHHHHhcC--
Confidence 356789999999999999999999999999999998 6999994333333 8887 899999999887764321
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEEe
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMTD 115 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~D 115 (974)
..++||++++ +.|+.+.+.-+
T Consensus 369 -----------~~vlvEe~i~-G~d~Rv~Vigg 389 (547)
T TIGR03103 369 -----------DRVLLERYVP-GEDLRLVVIDF 389 (547)
T ss_pred -----------CcEEEEEecc-CCeEEEEEECC
Confidence 3689999997 78888866544
No 129
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=7.7e-05 Score=83.95 Aligned_cols=92 Identities=20% Similarity=0.305 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCCCceeeCCHHHHHHHHHH-cCCCcEEEEeeeecCcccccCeEEEeCCHH-HHHHHHHHHHhcccccc
Q psy3769 7 QGKEILRKFNVTIPKGILCMNVDEAIKAAKK-IGGNSWVIKAQIHAGGRGKCGGIKLAQSLE-QVEKYTKKILGMQLITS 84 (974)
Q Consensus 7 ~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~-ig~~PvVvK~qi~~ggrgk~GGV~l~~s~e-e~~~a~~~~l~~~~~t~ 84 (974)
.+-++|++.|+|+|++.++.+++|+...+++ +| +|+|+||-.-++|+ ||.++++.+ ++.+..+.+.+...
T Consensus 122 ~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g-~pvVlKp~~Gs~G~----gV~~v~~~d~~l~~~~e~~~~~~~--- 193 (318)
T COG0189 122 YTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLG-FPVVLKPLDGSGGR----GVFLVEDADPELLSLLETLTQEGR--- 193 (318)
T ss_pred HHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhcC-CCEEEeeCCCCCcc----ceEEecCCChhHHHHHHHHhcccc---
Confidence 4678999999999999999998777665554 56 89999996555566 999999999 88887776644321
Q ss_pred ccCCCCCceeEEEEEEEeccceeEEEEEEEe
Q psy3769 85 QTNQEGENVFCVLIEEYIDIKKELYISFMTD 115 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~~~E~ylgi~~D 115 (974)
+.+++|||++....-+..+.+.
T Consensus 194 ---------~~~ivQeyi~~~~~~~rrivv~ 215 (318)
T COG0189 194 ---------KLIIVQEYIPKAKRDDRRVLVG 215 (318)
T ss_pred ---------ceEehhhhcCcccCCcEEEEEe
Confidence 3689999998777656665555
No 130
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=0.00022 Score=80.23 Aligned_cols=166 Identities=11% Similarity=0.068 Sum_probs=115.0
Q ss_pred HHHHHHHHHHcCCCCCCceeeCC----HHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcc
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMN----VDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQ 80 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s----~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~ 80 (974)
-..+|.+++..|+|++++...+. ....++..+.++ ||++|||.- -|.+=|+..+++.++.+.+.+..+...
T Consensus 104 k~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~-~p~~Vkp~~----~gSSvg~~~v~~~~d~~~~~e~a~~~d 178 (317)
T COG1181 104 KIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLG-FPLFVKPAR----EGSSVGRSPVNVEGDLQSALELAFKYD 178 (317)
T ss_pred HHHHHHHHHHCCCCccceeeeecccchhHHHHHhhcccC-CCEEEEcCC----ccceeeEEEeeeccchHHHHHHHHHhC
Confidence 45689999999999999988764 233345666788 999999932 233447788899999998766665443
Q ss_pred ccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHH
Q psy3769 81 LITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNI 160 (974)
Q Consensus 81 ~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a 160 (974)
+.+++|+++. ++|+-+++..+.. . +..+. -.|...+ ...+.++++
T Consensus 179 -------------~~vl~e~~~~-~rei~v~vl~~~~-~-~~~l~------~~eI~~~-------------~~~fydye~ 223 (317)
T COG1181 179 -------------RDVLREQGIT-GREIEVGVLGNDY-E-EQALP------LGEIPPK-------------GEEFYDYEA 223 (317)
T ss_pred -------------CceeeccCCC-cceEEEEecCCcc-c-ceecC------ceEEecC-------------CCeEEeeec
Confidence 4789999999 9999999998865 2 21111 1122211 022344443
Q ss_pred HHHH-------HHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEcc-CCcEEEEE
Q psy3769 161 DNIS-------KKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINS-KNKIISLD 213 (974)
Q Consensus 161 ~~~~-------~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~-~g~~~alD 213 (974)
..+. ...+++++..+++.+++.+.++.+.+.++..+| ++++. +|+++.+.
T Consensus 224 Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvD---f~~~~~~g~~~l~E 281 (317)
T COG1181 224 KYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVD---FFVDDDEGEFVLLE 281 (317)
T ss_pred cccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEE---EEEECCCCCEEEEE
Confidence 3333 233688889999999999999999988888888 67765 56666544
No 131
>PRK06849 hypothetical protein; Provisional
Probab=97.75 E-value=0.00076 Score=78.41 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHc-CCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhcccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKI-GGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLI 82 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~i-g~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~ 82 (974)
+-++.++++++.|||+|++..+++.+++.+++.+. + +|+|+||....++ .||.++.+.+++. ++ ..
T Consensus 116 DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~~-~P~vlKP~~~~~~----~~v~~~~~~~~l~----~~---~~- 182 (389)
T PRK06849 116 NKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTPH-TPYVLKPIYSRFV----RRVDLLPKEAALK----EL---PI- 182 (389)
T ss_pred CHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCCC-CcEEEEeCcccCC----CeEEEecCHHHhc----cc---cc-
Confidence 34667899999999999999999999998887776 6 8999999543322 3777776733221 11 10
Q ss_pred ccccCCCCCceeEEEEEEEeccceeEEEEEEE
Q psy3769 83 TSQTNQEGENVFCVLIEEYIDIKKELYISFMT 114 (974)
Q Consensus 83 t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~ 114 (974)
...+.++|||+++ |.|+.+-...
T Consensus 183 --------~~~~~~ivQe~I~-G~e~~~~~~~ 205 (389)
T PRK06849 183 --------SKDNPWVMQEFIQ-GKEYCSYSIV 205 (389)
T ss_pred --------CCCCCeEEEEEec-CCeEEEEEEE
Confidence 0113589999999 5676554443
No 132
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=97.67 E-value=0.001 Score=79.60 Aligned_cols=163 Identities=16% Similarity=0.258 Sum_probs=110.8
Q ss_pred HHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 6 YQGKEILRKFNVTIPKGI--LCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~--~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
-.|+.+-.+.|+||-++. ...+.+|+.+.+++.| ||+.+|+..--||| |.+++++++++.+++++.-....
T Consensus 123 v~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~g-yPvmiKA~~GGGGR----GMR~vr~~~~l~~~~~~AksEAk-- 195 (1149)
T COG1038 123 VKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYG-YPVMIKAAAGGGGR----GMRVVRSEADLAEAFERAKSEAK-- 195 (1149)
T ss_pred HHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcC-CcEEEEEccCCCcc----ceeeecCHHHHHHHHHHHHHHHH--
Confidence 457888899999986543 4577999999999999 99999997656666 89999999999998887654432
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
...| -..|+||+++...+-+-+-+.-|. .+..|=++- =...| .++| +++ +.++|...+++
T Consensus 196 ---aAFG--~~eVyvEk~ve~pkHIEVQiLgD~-~GnvvHLfE--RDCSv---QRRh-QKV--VE~APa~~L~~------ 255 (1149)
T COG1038 196 ---AAFG--NDEVYVEKLVENPKHIEVQILGDT-HGNVVHLFE--RDCSV---QRRH-QKV--VEVAPAPYLSP------ 255 (1149)
T ss_pred ---HhcC--CCcEEhhhhhcCcceeEEEEeecC-CCCEEEEee--cccch---hhcc-cee--EEecCCCCCCH------
Confidence 0122 247899999987777778888884 565654442 12222 2222 333 56777555554
Q ss_pred HHHCCCChhhHHHHHHHHHHHHhhc-----------ccC--CeeEEeeceeEE
Q psy3769 164 SKKISIPKNSLINFYEEIQNIYKSY-----------WET--DSLLLEINPLVI 203 (974)
Q Consensus 164 ~~~lg~~~~~~~~l~~~l~~L~~l~-----------~~~--d~~~lEINPL~v 203 (974)
+..+++++-.+++.+-. .+. ....+|+||=+.
T Consensus 256 --------~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQ 300 (1149)
T COG1038 256 --------ELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQ 300 (1149)
T ss_pred --------HHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCcee
Confidence 44555666666665432 222 377889999654
No 133
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.59 E-value=0.0017 Score=73.50 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecC--cccccCeEEEeCCHHHHHHHHHHHHhcccccc
Q psy3769 7 QGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAG--GRGKCGGIKLAQSLEQVEKYTKKILGMQLITS 84 (974)
Q Consensus 7 ~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~g--grgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~ 84 (974)
...++|+++|||+|+... +++ ++. +||+|||.-..| +| |+.+++|++|+.+.++++.....++.
T Consensus 129 ~~yk~L~~aGI~~Pk~~~--~p~-------eId-~PVIVKp~~asG~~sr----G~f~a~s~eEl~~~a~~l~~~g~I~~ 194 (366)
T PRK13277 129 NYYWLLEKAGIPYPKLFK--DPE-------EID-RPVIVKLPEAKRRLER----GFFTASSYEDFYEKSEELIKAGVIDR 194 (366)
T ss_pred HHHHHHHHcCCCCceeec--Ccc-------ccC-ccEEEEECCCCCcccc----CeEeeCCHHHHHHHHHhhhhcCcccc
Confidence 344699999999998665 443 566 899999965554 44 99999999999998887765333221
Q ss_pred ccCCCCCceeEEEEEEEeccceeEEEEEEEeccCC
Q psy3769 85 QTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQ 119 (974)
Q Consensus 85 q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~ 119 (974)
...+..+|||++. |.|+++-+..|+-.+
T Consensus 195 ------~~~~~~iIQEyI~-G~ey~~d~F~s~l~g 222 (366)
T PRK13277 195 ------EDLKNARIEEYVI-GAHFNFNYFYSPIRD 222 (366)
T ss_pred ------cccccceeEeccC-CCEEEEEEEEeccCC
Confidence 2235778999998 889999999986444
No 134
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=97.55 E-value=0.0011 Score=74.69 Aligned_cols=103 Identities=19% Similarity=0.314 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCC--CcEEEEeeeecCcccccCeEEEeC-CHHHHHHHHH-------
Q psy3769 5 EYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGG--NSWVIKAQIHAGGRGKCGGIKLAQ-SLEQVEKYTK------- 74 (974)
Q Consensus 5 E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~--~PvVvK~qi~~ggrgk~GGV~l~~-s~ee~~~a~~------- 74 (974)
.+...+.+++.|+|+|++..++|.+|.+++.++++. .|+.|||..-.||+ |.++++ +.+++....+
T Consensus 108 K~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~----GFr~l~~~~~~l~~l~~~~~~~i~ 183 (329)
T PF15632_consen 108 KAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGIGGR----GFRVLDESRDELDALFEPDSRRIS 183 (329)
T ss_pred HHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCCCcc----eEEEEccCcchHHHhcCCCcceeC
Confidence 355678899999999999999999999999998751 35999997666666 888876 5555554333
Q ss_pred --HHHhccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCce
Q psy3769 75 --KILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNI 121 (974)
Q Consensus 75 --~~l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~p 121 (974)
+++. .+ .........+|.||++ |.|+.|=+..++ |..
T Consensus 184 ~~~~~~-~l------~~~~~~~~llvMeyL~-G~EySVD~l~~~--G~v 222 (329)
T PF15632_consen 184 LDELLA-AL------QRSEEFPPLLVMEYLP-GPEYSVDCLADE--GRV 222 (329)
T ss_pred HHHHHH-HH------hccCCCCCcEEecCCC-CCeEEEEEEecC--CEE
Confidence 1110 00 0123456789999999 899999998886 444
No 135
>KOG0369|consensus
Probab=97.52 E-value=0.0017 Score=76.13 Aligned_cols=148 Identities=19% Similarity=0.333 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 6 YQGKEILRKFNVTIPKGI--LCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~--~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
-.|+.+--+.|+|+.++. -+++.+||.+++++-| +|+++|+..--||| |.+++++.|++++++++.......
T Consensus 149 v~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG-~PvI~KAAyGGGGR----GmRvVr~~e~vee~f~Ra~SEA~a- 222 (1176)
T KOG0369|consen 149 VAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYG-LPVIIKAAYGGGGR----GMRVVRSGEDVEEAFQRAYSEALA- 222 (1176)
T ss_pred HHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcC-CcEEEeecccCCCc----ceEEeechhhHHHHHHHHHHHHHH-
Confidence 357788888999987764 4689999999999999 99999997766777 899999999999998887655431
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHH
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNI 163 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~ 163 (974)
..|. -.+.||+|++.-+-+-+-+.-|. .+.++=++- -...+ .+++ +++ +.++|..
T Consensus 223 ----aFGn--G~~FvEkF~ekPrHIEvQllgD~-~GNvvHLyE--RDCSv---QRRH-QKV--VEiAPA~---------- 277 (1176)
T KOG0369|consen 223 ----AFGN--GTLFVEKFLEKPRHIEVQLLGDK-HGNVVHLYE--RDCSV---QRRH-QKV--VEIAPAK---------- 277 (1176)
T ss_pred ----hcCC--ceeeHHhhhcCcceeEEEEeccc-CCCEEEEee--cccch---hhhh-cce--eEecccc----------
Confidence 0121 25688999987777778888884 454533332 11211 1222 333 4566632
Q ss_pred HHHCCCChhhHHHHHHHHHHHHhhc
Q psy3769 164 SKKISIPKNSLINFYEEIQNIYKSY 188 (974)
Q Consensus 164 ~~~lg~~~~~~~~l~~~l~~L~~l~ 188 (974)
.+|++..+++.+-.++|.+-.
T Consensus 278 ----~Lp~~vR~~~~~davklAk~v 298 (1176)
T KOG0369|consen 278 ----TLPPEVRDAILTDAVKLAKHV 298 (1176)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHh
Confidence 245666777777777777654
No 136
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.51 E-value=0.00036 Score=76.81 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=85.8
Q ss_pred cccccCcccccchhhhhc-cCCCCceEEEEec-CCC--CCc---cc-----cccccccchhhhcccCCCcEEEEEecchh
Q psy3769 323 IFGITGKTGRFHTNLCLN-YGNGKKAFVAGVN-PKK--NGQ---KF-----EEIPIFDTVKNAKNETGATVSVIYVPAIF 390 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~-~g~~g~~~V~pVn-P~~--~g~---~i-----~G~~~y~sl~dip~~~~vDlavi~vp~~~ 390 (974)
++|..|++|..+.+.+.+ -+++ .+..+. +.. .++ ++ .|++.|.+++++. ..+|+++.++|++.
T Consensus 6 IiGa~G~MG~~i~~~i~~~~~~e---lvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~--~~~DvVIdfT~p~~ 80 (266)
T TIGR00036 6 VAGAAGRMGRELIKAALAAEGLQ---LVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVE--TDPDVLIDFTTPEG 80 (266)
T ss_pred EECCCCHHHHHHHHHHHhCCCCE---EEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhc--CCCCEEEECCChHH
Confidence 467778899999888874 3566 455555 221 011 11 3688899999983 37999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCce-EEccC-Cccccc
Q psy3769 391 ATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTL-LLGPN-CPGLIV 444 (974)
Q Consensus 391 v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~-viGPn-c~G~~~ 444 (974)
..+.++.|++.|+. +++-+.|+.+++.++|.+.|+ ++|+. +++|| ++|+..
T Consensus 81 ~~~~~~~al~~g~~-vVigttg~~~e~~~~l~~aA~--~~g~~v~~a~NfSlGv~l 133 (266)
T TIGR00036 81 VLNHLKFALEHGVR-LVVGTTGFSEEDKQELADLAE--KAGIAAVIAPNFSIGVNL 133 (266)
T ss_pred HHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHh--cCCccEEEECcccHHHHH
Confidence 99999999999977 577788998888889999999 88876 44677 556543
No 137
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=97.45 E-value=0.00046 Score=71.00 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q psy3769 680 IKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSGNMIF 759 (974)
Q Consensus 680 v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~ig~~l~~ 759 (974)
+.||.+.|++.|.||+....-+|++.|++.+-.+...|.+.+......+...-..+++ +|++++++..+|.|+|.+|+.
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~ml~ 80 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKLLL 80 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999998888888889999999888777777776666666 899999999999999999987
Q ss_pred cc
Q psy3769 760 SD 761 (974)
Q Consensus 760 ~~ 761 (974)
+.
T Consensus 81 ~~ 82 (176)
T TIGR03717 81 EE 82 (176)
T ss_pred cc
Confidence 54
No 138
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.41 E-value=0.00041 Score=67.37 Aligned_cols=106 Identities=23% Similarity=0.289 Sum_probs=77.9
Q ss_pred cccccCcccccchhhhhc-cCCCCceEEEEecCCC---CCc--------cccccccccchhhhcccCCCcEEEEEecchh
Q psy3769 323 IFGITGKTGRFHTNLCLN-YGNGKKAFVAGVNPKK---NGQ--------KFEEIPIFDTVKNAKNETGATVSVIYVPAIF 390 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~-~g~~g~~~V~pVnP~~---~g~--------~i~G~~~y~sl~dip~~~~vDlavi~vp~~~ 390 (974)
+.|.++|.|+.+.+.+.+ .+++ .+..+.++. .|+ .-.|++.+.+++++.+ .+|+++-++.++.
T Consensus 5 i~G~~GrMG~~i~~~i~~~~~~~---lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~--~~DVvIDfT~p~~ 79 (124)
T PF01113_consen 5 IVGASGRMGRAIAEAILESPGFE---LVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE--EADVVIDFTNPDA 79 (124)
T ss_dssp EETTTSHHHHHHHHHHHHSTTEE---EEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT--H-SEEEEES-HHH
T ss_pred EECCCCHHHHHHHHHHHhcCCcE---EEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc--cCCEEEEcCChHH
Confidence 578888999999999886 5666 455555553 111 2458899999999987 6999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCce-EEccC
Q psy3769 391 ATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTL-LLGPN 438 (974)
Q Consensus 391 v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~-viGPn 438 (974)
+.+.++.|.+.|++. |+-+.|+.+++.++|.+.++ + +. +.-||
T Consensus 80 ~~~~~~~~~~~g~~~-ViGTTG~~~~~~~~l~~~a~--~--~~vl~a~N 123 (124)
T PF01113_consen 80 VYDNLEYALKHGVPL-VIGTTGFSDEQIDELEELAK--K--IPVLIAPN 123 (124)
T ss_dssp HHHHHHHHHHHT-EE-EEE-SSSHHHHHHHHHHHTT--T--SEEEE-SS
T ss_pred hHHHHHHHHhCCCCE-EEECCCCCHHHHHHHHHHhc--c--CCEEEeCC
Confidence 999999999999885 78899998877788888787 4 44 44666
No 139
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=97.25 E-value=0.0009 Score=69.37 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=69.3
Q ss_pred HHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHhhhc
Q psy3769 682 TIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLV-LILIEKFSSIIILCSILLGYLSGNMIFS 760 (974)
Q Consensus 682 ~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~-~~~~~~~~~l~~~~~~~l~~ig~~l~~~ 760 (974)
++.+.|.+.|+||+....-+++..|++.+......|...++ ++|...-.+ +.+++.+|++++++.++|.|+|+|++.+
T Consensus 2 tl~~lE~~Ls~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~-~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~~~ 80 (183)
T PF03741_consen 2 TLVLLEIVLSIDNAFVIAMIFRKLPPEQRRKALFWGIIGAI-VLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLLHE 80 (183)
T ss_pred chhhhhHHHHhhHHHHHHHHHhCCCHHHhhhhHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57789999999999999999998998889999999999998 555555544 5667777999999999999999999997
Q ss_pred cc
Q psy3769 761 DQ 762 (974)
Q Consensus 761 ~~ 762 (974)
..
T Consensus 81 ~~ 82 (183)
T PF03741_consen 81 ER 82 (183)
T ss_pred cc
Confidence 64
No 140
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.02 E-value=0.0012 Score=78.07 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=59.6
Q ss_pred CCeEEEEecCcchhhHHHHHHHhcCCCCc---------------------eeeecCCCCCHHHHHHHHHHHhhcCCeEEE
Q psy3769 261 NGNIGCLVNGAGLAMATMDTIKLFGGEPA---------------------NFLDIGGGATIKTITEAFKIMMQQNNLKTI 319 (974)
Q Consensus 261 ~G~Ig~~~nGaGlam~t~D~i~~~gg~pa---------------------nfld~GG~a~~~~v~~a~~~il~~~~~~~i 319 (974)
..+|+++.|++|+++.+.|.+..+|.+.+ |.+|++|.++++.+.++++.++.||++.++
T Consensus 295 g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~V 374 (447)
T TIGR02717 295 GNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGV 374 (447)
T ss_pred CCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEE
Confidence 56899999999999999999999998766 999999999999999999999999999999
Q ss_pred EEccc
Q psy3769 320 LVNIF 324 (974)
Q Consensus 320 ~vni~ 324 (974)
++++.
T Consensus 375 lv~~~ 379 (447)
T TIGR02717 375 VVVLT 379 (447)
T ss_pred EEEcc
Confidence 87665
No 141
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=97.00 E-value=0.0082 Score=63.40 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=57.8
Q ss_pred hHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccc
Q psy3769 597 TDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNL-----KYIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 597 Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~-----~~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
.|+.++.-.+++.++++|++.....+.-+.+.=.+|.+++.+++++ +-+++.||++|+.+|++|+..+
T Consensus 19 g~ip~f~~lt~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~ 91 (203)
T PF01914_consen 19 GNIPIFLSLTKGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGS 91 (203)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555666677788888888888888888888889999999999965 4699999999999999999764
No 142
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=96.93 E-value=0.002 Score=65.50 Aligned_cols=81 Identities=23% Similarity=0.550 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccc
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLIT 83 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t 83 (974)
+-+..++.|++.|||+|........+ ... +|+|+||.--.||. ||.+.++.+++.......
T Consensus 3 dK~~~~~~L~~~gi~~P~~~~~~~~~-------~~~-~~~viKp~~G~Gg~----~i~~~~~~~~~~~~~~~~------- 63 (161)
T PF02655_consen 3 DKLKTYKFLKELGIPVPTTLRDSEPE-------PID-GPWVIKPRDGAGGE----GIRIVDSEDELEEFLNKL------- 63 (161)
T ss_dssp SHHHHHHHHTTT-S--------EESS---------S-SSEEEEESS-----------B--SS--TTE-------------
T ss_pred CHHHHHHHHHccCCCCCCcccccccc-------ccC-CcEEEEeCCCCCCC----CeEEECCchhhccccccc-------
Confidence 34678899999999999322222111 123 79999994323333 666788887666532221
Q ss_pred cccCCCCCceeEEEEEEEeccceeEEEEEEEec
Q psy3769 84 SQTNQEGENVFCVLIEEYIDIKKELYISFMTDR 116 (974)
Q Consensus 84 ~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr 116 (974)
-++||+++ |.++.+.+..+.
T Consensus 64 ------------~i~Qe~i~-G~~~Sv~~l~~~ 83 (161)
T PF02655_consen 64 ------------RIVQEFIE-GEPYSVSFLASG 83 (161)
T ss_dssp -------------EEEE----SEEEEEEEEE-S
T ss_pred ------------eEEeeeeC-CEEeEEEEEEeC
Confidence 18999998 899999998885
No 143
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.88 E-value=0.0037 Score=68.54 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=80.3
Q ss_pred cccccCcccccchhhhhcc-CCCCceEEEEecCCCCCc---cccccccccchhhhcccCCCcEEEEEecchhHHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNY-GNGKKAFVAGVNPKKNGQ---KFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEA 398 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~-g~~g~~~V~pVnP~~~g~---~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~ 398 (974)
++|.+++.|..+.+.+.+. +++ .+..+.+..... .-.|++.|.+++++.+ .+|+++.++|++...+.++.|
T Consensus 6 IiG~~G~mG~~i~~~l~~~~~~e---lvav~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~~~~~~~~~a 80 (257)
T PRK00048 6 VAGASGRMGRELIEAVEAAEDLE---LVAAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPEATLENLEFA 80 (257)
T ss_pred EECCCCHHHHHHHHHHHhCCCCE---EEEEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHHHHHHHHHHH
Confidence 4687788899888777753 455 344444332001 2246778999999875 799999999999999999999
Q ss_pred HHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccC-Ccccc
Q psy3769 399 IESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPN-CPGLI 443 (974)
Q Consensus 399 ~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPn-c~G~~ 443 (974)
+++|+.. ++-+.|+.+++.++|.+.++ +.++ ++.|| ++|+.
T Consensus 81 l~~G~~v-vigttG~s~~~~~~l~~aa~--~~~v-~~s~n~s~g~~ 122 (257)
T PRK00048 81 LEHGKPL-VIGTTGFTEEQLAELEEAAK--KIPV-VIAPNFSIGVN 122 (257)
T ss_pred HHcCCCE-EEECCCCCHHHHHHHHHHhc--CCCE-EEECcchHHHH
Confidence 9999885 56688999888888888555 5554 44566 44443
No 144
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=96.75 E-value=0.0012 Score=58.56 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=32.1
Q ss_pred CCceeeccccCeEEEecCCcEeEEEEEe-ecCCCcceE
Q psy3769 936 SDTFYWFNLIDCIVENIHGKLLGTVTEI-IQNKLTGIK 972 (974)
Q Consensus 936 e~e~y~~DLiG~~V~d~~g~~lG~V~~v-~~~ga~dv~ 972 (974)
+++||++||+|++|+|++|+.+|+|.|+ ++...+.+.
T Consensus 1 ~~~~~~s~l~g~~V~~~~G~~iG~V~di~id~~~~~i~ 38 (79)
T PF05239_consen 1 MDEFRLSELIGKEVIDRDGEKIGKVKDIVIDPKTGKIV 38 (79)
T ss_dssp -CHGCHHHHTTSEEEETTSCEEEEEEEEEEETTTTEEE
T ss_pred CCeEEhHHccCCEEEcCCCCEEEEEEEEEEeCCCCCEE
Confidence 5899999999999999999999999999 776666654
No 145
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=96.70 E-value=0.057 Score=60.73 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHc--CCCcEEEEeeeecCcccccCeEEEeCCH
Q psy3769 6 YQGKEILRKFNVTIPKGILCMNVDEAIKAAKKI--GGNSWVIKAQIHAGGRGKCGGIKLAQSL 66 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~i--g~~PvVvK~qi~~ggrgk~GGV~l~~s~ 66 (974)
+.+..+|+++|||||++.++.+.+.+.+...++ +..|+|+||..-++|| ||.++++.
T Consensus 39 ~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~Gr----GI~~i~~~ 97 (317)
T TIGR02291 39 LKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGK----GILVITSR 97 (317)
T ss_pred HHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECCCCCcc----CeEEEEec
Confidence 467899999999999999988877555445444 3137999996545455 78776544
No 146
>PRK10739 putative antibiotic transporter; Provisional
Probab=96.65 E-value=0.028 Score=59.01 Aligned_cols=68 Identities=22% Similarity=0.391 Sum_probs=56.6
Q ss_pred hHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccc
Q psy3769 597 TDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNL-----KYIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 597 Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~-----~~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
.|+-++.-.+++.++++|++.....+.-+.+.=++|.+++.+++++ +-+++.||++|+.+|++|+.++
T Consensus 19 g~ipiflslt~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 19 GNLPIFMSVLKHLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555666677788888888888888888888888999999999964 4699999999999999999765
No 147
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=96.63 E-value=0.007 Score=68.34 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=58.7
Q ss_pred HHHHHHHHHcC-------CCCCCceeeCCHHHHH---HHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHH
Q psy3769 6 YQGKEILRKFN-------VTIPKGILCMNVDEAI---KAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKK 75 (974)
Q Consensus 6 ~~ak~lL~~~G-------Ipvp~~~~~~s~eea~---~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~ 75 (974)
....++|++.| ||+|++.++.+.+.+. ...+++| ||+|+||.+-+ |.+++-++.++.+++.+..
T Consensus 109 ~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~-~P~V~KPl~g~-Gss~gh~m~lv~~~~~L~~---- 182 (328)
T PLN02941 109 QSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLK-FPLVAKPLVAD-GSAKSHKMSLAYDQEGLSK---- 182 (328)
T ss_pred HHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCC-CCEEEeecccC-CCccccceEEecCHHHHHh----
Confidence 34567888888 9999999999987654 3345788 99999997654 4555569999999877765
Q ss_pred HHhccccccccCCCCCceeEEEEEEEeccc
Q psy3769 76 ILGMQLITSQTNQEGENVFCVLIEEYIDIK 105 (974)
Q Consensus 76 ~l~~~~~t~q~~~~g~~~~~vLVee~v~~~ 105 (974)
+ . ..+++|||++++
T Consensus 183 -----l-------~----~p~~lQEfVnh~ 196 (328)
T PLN02941 183 -----L-------E----PPLVLQEFVNHG 196 (328)
T ss_pred -----c-------C----CcEEEEEecCCC
Confidence 1 1 027999999764
No 148
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=96.58 E-value=0.033 Score=58.74 Aligned_cols=69 Identities=25% Similarity=0.370 Sum_probs=58.1
Q ss_pred hhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccc
Q psy3769 596 STDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNL-----KYIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 596 ~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~-----~~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
..|+-++.-..++.++++|++.......-+.++=++|.+++.+++++ +-+++.||++|+.+|++|+..+
T Consensus 21 ig~ipvfl~lt~~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 21 IGNIPIFISLTEYYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35666667777888888888888888888888888999999999964 4699999999999999999653
No 149
>KOG0370|consensus
Probab=96.52 E-value=0.0016 Score=78.89 Aligned_cols=120 Identities=21% Similarity=0.334 Sum_probs=91.5
Q ss_pred HHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccCCCCC
Q psy3769 12 LRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGE 91 (974)
Q Consensus 12 L~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~ 91 (974)
|.+-+.++.++..+.+.|||.++++++| |||++.+....||-|. .++.+.+|+.+.+.+.+...
T Consensus 506 m~ei~e~ia~s~a~~sie~al~aae~l~-ypvivRaayalgglgS----gfa~n~eeL~~l~~~a~a~s----------- 569 (1435)
T KOG0370|consen 506 LNEINEKIAPSEAVSTIEEALEAAERLG-YPVIVRAAYALGGLGS----GFANNEEELQDLAAQALALS----------- 569 (1435)
T ss_pred HHhhcccccchhhHhHHHHHHHHHHhcC-cHHHHHHHHHhcCccc----cccccHHHHHHHHhhccccC-----------
Confidence 4566899999999999999999999999 9999998666666644 37899999998777765443
Q ss_pred ceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEE---EEeCCCCCCCHHH
Q psy3769 92 NVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYK---TIIDPLIGLTKNN 159 (974)
Q Consensus 92 ~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~---~~i~p~~gl~~~~ 159 (974)
.++|||+.+.+++|.-.-+.+|....|. .++ +.|.++ |-.|++ +-++|..-+++.+
T Consensus 570 --~QilvekSlkGwkevEyevvrDa~~nci--Tvc-----nmen~D---plgihtGdSiVvapsqtlsd~e 628 (1435)
T KOG0370|consen 570 --PQILVEKSLKGWKEVEYEVVRDAYDNCI--TVC-----NMENFD---PLGIHTGDSIVVAPSQTLSDEE 628 (1435)
T ss_pred --ceeeehhhhccccceEEEEEeccccchh--hhc-----CCcccC---cceeeccceEEEeeccccChHH
Confidence 4799999999999999999999866655 444 234443 555554 5677766666543
No 150
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=96.52 E-value=0.033 Score=58.63 Aligned_cols=69 Identities=20% Similarity=0.396 Sum_probs=59.3
Q ss_pred hhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhccc
Q psy3769 596 STDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNLK-----YIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 596 ~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~~-----~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
..|+-++....++++++.|++.....+.-|...=.+|.+++.++++++ -++..||++|+++|++|+..+
T Consensus 21 ~G~ipvf~slt~~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~ 94 (203)
T COG2095 21 IGNLPVFISLTKGLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGP 94 (203)
T ss_pred CchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCC
Confidence 356666667778899899999999999999998899999999999754 589999999999999999865
No 151
>PRK11111 hypothetical protein; Provisional
Probab=96.32 E-value=0.057 Score=57.44 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=55.5
Q ss_pred hHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhcc
Q psy3769 597 TDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNL-----KYIKIIGGFLLFWISIKLLSN 663 (974)
Q Consensus 597 Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~-----~~~~~~gg~~Ll~~~~~~~~~ 663 (974)
.|+-++....++.++++|++.......-+.++=++|.+++.+++++ +-+++.||++|+.+|++|+..
T Consensus 25 g~ipiflslt~~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 25 GILPVFISMTSHQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555556667778888888888888888888888999999999965 469999999999999999964
No 152
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.31 E-value=0.017 Score=63.59 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=86.0
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCcccc------ccccc--cchhhhcccC---CCc-EEEEEecchh
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFE------EIPIF--DTVKNAKNET---GAT-VSVIYVPAIF 390 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~------G~~~y--~sl~dip~~~---~vD-lavi~vp~~~ 390 (974)
+.|.++|.|..+.+.+.+.++. -|..+.++..|+.+. +++.| .+++++.... .+| ++|=++.|+.
T Consensus 16 V~Ga~G~MG~~~~~av~~~~~~---Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a 92 (286)
T PLN02775 16 VNGCTGKMGHAVAEAAVSAGLQ---LVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDA 92 (286)
T ss_pred EECCCChHHHHHHHHHhcCCCE---EEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCChHH
Confidence 4688999999999988887787 466677665444322 68888 8888887433 589 7888999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCce-EEccC-Ccccccc
Q psy3769 391 ATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTL-LLGPN-CPGLIVP 445 (974)
Q Consensus 391 v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~-viGPn-c~G~~~~ 445 (974)
+.+.++.|.+.|++. |+-|.|+.+++.+ +.++ +.++. ++-|| ++|+...
T Consensus 93 ~~~~~~~~~~~g~~~-VvGTTG~~~e~l~---~~~~--~~~i~vv~apNfSiGv~ll 143 (286)
T PLN02775 93 VNDNAELYCKNGLPF-VMGTTGGDRDRLL---KDVE--ESGVYAVIAPQMGKQVVAF 143 (286)
T ss_pred HHHHHHHHHHCCCCE-EEECCCCCHHHHH---HHHh--cCCccEEEECcccHHHHHH
Confidence 999999999999985 8889999876444 4455 44554 66788 6676543
No 153
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=96.15 E-value=0.013 Score=62.17 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=63.6
Q ss_pred HHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcc
Q psy3769 685 FADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSGNMIFSD 761 (974)
Q Consensus 685 ~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~ig~~l~~~~ 761 (974)
+.|++.|+||+...+-+++..|++.+--....|...++ ++|...-++...+=++|++++++.++|.|+|+||+.++
T Consensus 2 ~lE~vLS~DN~~via~~~~~LP~~~r~~al~~Gi~gAi-vlR~i~i~~~~~Ll~~~~l~~iGG~~Ll~~~~k~l~~~ 77 (215)
T TIGR03716 2 ILEGLLSADNALVLAVMVKHLPEKQRKKALFYGLIGAY-VFRFIALFLASFLIKFWWIKAIGALYLLYLAIKHFRKK 77 (215)
T ss_pred chhHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999998888777777888877665 56766666666666688999999999999999999864
No 154
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=96.14 E-value=0.025 Score=62.76 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHhc--ccccccccchhhHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHH
Q psy3769 676 LIHAIKTIIFADLIMSIDNVLAIAGTA--SQISNKYQMLLVIIGILFSIPIIIFGSKLV-LILIEKFSSIIILCSILLGY 752 (974)
Q Consensus 676 ~~~~v~~I~~~D~~fs~Dsv~a~~~~t--~~~~~~~~~~li~~g~~~~i~~l~~~~~~~-~~~~~~~~~l~~~~~~~l~~ 752 (974)
.+....+.-+.|.+.|+||+...+.+. ...|++.+--.++.|++.++ +||...-.+ +.++++|+++.+++.++|.|
T Consensus 61 ~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAl-vlR~i~i~~g~~Li~~f~wi~~ifG~fLi~ 139 (302)
T TIGR03718 61 AALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGAL-VLRAIFIALGAALIEQFHWVLYIFGAFLLY 139 (302)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456678888999999999999877764 25677777788888887775 455555544 67888999999999999999
Q ss_pred HHHHhhhcc
Q psy3769 753 LSGNMIFSD 761 (974)
Q Consensus 753 ig~~l~~~~ 761 (974)
+|+||+.++
T Consensus 140 ~a~k~~~~~ 148 (302)
T TIGR03718 140 TGIKMLFEG 148 (302)
T ss_pred HHHHHHhhc
Confidence 999999854
No 155
>PRK10995 inner membrane protein; Provisional
Probab=96.12 E-value=0.1 Score=56.02 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=56.0
Q ss_pred hHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccc
Q psy3769 597 TDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNL-----KYIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 597 Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~-----~~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
-|+-++.-.+++.++++|++.......-+.++=+++.+.+.+++++ +.+++.||++|+|+|++|+..+
T Consensus 23 g~~pif~~lt~~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 23 TTVALFLGLSGNMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555566667778888888888888888888888999999999964 5799999999999999999653
No 156
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.026 Score=60.97 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=84.5
Q ss_pred cccccCcccccchhhhhccC-CCCceEEEEecCCCC-----------CccccccccccchhhhcccCCCcEEEEEecchh
Q psy3769 323 IFGITGKTGRFHTNLCLNYG-NGKKAFVAGVNPKKN-----------GQKFEEIPIFDTVKNAKNETGATVSVIYVPAIF 390 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g-~~g~~~V~pVnP~~~-----------g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~ 390 (974)
+.|..+++|..+++.+.+.+ ++ .+..+..... |..-.|+|+.+++..... .+|++|=++.|+.
T Consensus 7 V~Ga~GRMG~~ii~~v~~~~~~~---L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~--~~DV~IDFT~P~~ 81 (266)
T COG0289 7 VAGASGRMGRTLIRAVLEAPDLE---LVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA--DADVLIDFTTPEA 81 (266)
T ss_pred EEcCCChHHHHHHHHHhcCCCce---EEEEEecCCccccccchhhhccccccCceeecchhhccc--CCCEEEECCCchh
Confidence 57888999999999888554 44 3333322210 124568999998666644 8999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccC-Ccccc
Q psy3769 391 ATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPN-CPGLI 443 (974)
Q Consensus 391 v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPn-c~G~~ 443 (974)
+.+.++.|.+.|++. |+=|.||.+++.++|.++++ +.++ ++.|| ++|+.
T Consensus 82 ~~~~l~~~~~~~~~l-VIGTTGf~~e~~~~l~~~a~--~v~v-v~a~NfSiGvn 131 (266)
T COG0289 82 TLENLEFALEHGKPL-VIGTTGFTEEQLEKLREAAE--KVPV-VIAPNFSLGVN 131 (266)
T ss_pred hHHHHHHHHHcCCCe-EEECCCCCHHHHHHHHHHHh--hCCE-EEeccchHHHH
Confidence 999999999999885 88999999999888999888 5332 55677 56654
No 157
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.032 Score=60.72 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy3769 675 NLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLS 754 (974)
Q Consensus 675 ~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~ig 754 (974)
..|.++.++.+.|.+.|+||+..++-+++..|+.++-=..+.|+..++..=..+-...+-+++...++.++.+..|.|++
T Consensus 15 ~~~~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~l~~~fg~~L~~~~ 94 (254)
T COG0861 15 AAWVALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQPLLYIFGLYLLWRD 94 (254)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999889888888889998887665555555666777777779999999999999
Q ss_pred HHhhhcccch
Q psy3769 755 GNMIFSDQSL 764 (974)
Q Consensus 755 ~~l~~~~~~~ 764 (974)
+||+.++...
T Consensus 95 ~~ll~~~~~~ 104 (254)
T COG0861 95 IKLLLGGLFL 104 (254)
T ss_pred HHHHhcchhH
Confidence 9999976543
No 158
>COG1971 Predicted membrane protein [Function unknown]
Probab=95.99 E-value=0.12 Score=53.34 Aligned_cols=112 Identities=22% Similarity=0.289 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhhccc---CCcc-cccCCCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhH--HH
Q psy3769 644 YIKIIGGFLLFWISIKLLSND---HNYT-TIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVI--IG 717 (974)
Q Consensus 644 ~~~~~gg~~Ll~~~~~~~~~~---~~~~-~~~~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~--~g 717 (974)
|=..+|+++|++++.+|+.+. ++++ ..++.+.... .....+.=++-|+|+...-++++.- +-|++... +|
T Consensus 68 ~~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~~-~~~~~~laiatSidal~vG~~~a~l---gv~i~~~av~iG 143 (190)
T COG1971 68 WAHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDLN-FKELILLAIATSIDALAVGVGLAFL---GVNILLAAVAIG 143 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchhh-HHHHHHHHHHHHHHHHHHhhhHHHh---cchHHHHHHHHH
Confidence 667899999999999999863 1111 1111222211 2333445677899999988888752 11222222 22
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhccc
Q psy3769 718 ---ILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSGNMIFSDQ 762 (974)
Q Consensus 718 ---~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~ig~~l~~~~~ 762 (974)
.+++.+++..+ ..+.++..+ |-+.++..+|..+|.++++++-
T Consensus 144 ~~T~il~~~G~~IG-~~~g~~~g~--~ae~lgGiiLI~~G~~iL~~~~ 188 (190)
T COG1971 144 LITLILSALGAIIG-RKLGKFLGK--YAEILGGIILIGIGVKILLEHL 188 (190)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhc
Confidence 22333333333 334444444 5678899999999999998653
No 159
>KOG0368|consensus
Probab=95.97 E-value=0.07 Score=68.08 Aligned_cols=137 Identities=23% Similarity=0.373 Sum_probs=95.2
Q ss_pred eeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccCCCCCceeEEEEEEEec
Q psy3769 24 LCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYID 103 (974)
Q Consensus 24 ~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~~~~~vLVee~v~ 103 (974)
.+++++|+.++|+.+| ||+.+|+.= ||-|| |++-+++.|+.+..+++..+.. .|.+ +.+-+-.+
T Consensus 224 cv~~~eegLeaae~IG-fPvMIKASE--GGGGK--GIRkv~n~ddF~~lf~qv~~Ev--------PGSP---IFlMK~a~ 287 (2196)
T KOG0368|consen 224 CVRNVEEGLEAAEKIG-FPVMIKASE--GGGGK--GIRKVENEDDFKALFKQVQNEV--------PGSP---IFLMKLAD 287 (2196)
T ss_pred hcCCHHHHHHHHHhcC-CceEEEecc--CCCCc--ceeeccchHHHHHHHHHHHhhC--------CCCc---eeeeeccc
Confidence 3678999999999999 999999953 44444 8999999999999888875542 3333 46666677
Q ss_pred cceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHHHHHCC---CChhhHHHHHHH
Q psy3769 104 IKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNISKKIS---IPKNSLINFYEE 180 (974)
Q Consensus 104 ~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~~~~lg---~~~~~~~~l~~~ 180 (974)
..+-+-+-+.-|. .+..+-++| +|.+ + --..++++.+.. -|++..+.+.+.
T Consensus 288 ~ARHlEVQlLaDq-YGn~IsLfg----------RDCS--------------i-QRRhQKIIEEAPatIap~etf~~Me~~ 341 (2196)
T KOG0368|consen 288 QARHLEVQLLADQ-YGNVISLFG----------RDCS--------------I-QRRHQKIIEEAPATIAPPETFKKMEQA 341 (2196)
T ss_pred Ccceeeeehhhhh-cCCEeEeec----------ccch--------------H-HHHHHHHHhhCCcccCCHHHHHHHHHH
Confidence 7777778888885 555555555 2211 1 012445555553 256788889999
Q ss_pred HHHHHhhcc--------------cCCeeEEeeceeE
Q psy3769 181 IQNIYKSYW--------------ETDSLLLEINPLV 202 (974)
Q Consensus 181 l~~L~~l~~--------------~~d~~~lEINPL~ 202 (974)
+++|.++.. +.....+|+||=.
T Consensus 342 AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRL 377 (2196)
T KOG0368|consen 342 AVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRL 377 (2196)
T ss_pred HHHHHHhhcceecceEEEEEecCCCcEEEEecCccc
Confidence 999988752 2236778888843
No 160
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.86 E-value=0.018 Score=63.37 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=74.9
Q ss_pred cccccCcccccchhhhhccC--CCCceEEEEecCCCCC-c---cccccccccchhhhcccCCCcEEEEEecchhHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYG--NGKKAFVAGVNPKKNG-Q---KFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g--~~g~~~V~pVnP~~~g-~---~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
|+| .|..|..+.+.+.+.+ ++ .++.++++... + +-.|.+.|.+++++.. .+|++++++|++...+..+
T Consensus 6 IIG-~G~iG~~ia~~l~~~~~~~e---lv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~~~ 79 (265)
T PRK13304 6 IVG-CGAIASLITKAILSGRINAE---LYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEVVP 79 (265)
T ss_pred EEC-ccHHHHHHHHHHHcCCCCeE---EEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHHHH
Confidence 456 3567888888877643 43 45556665300 0 1236788999999874 7999999999999999999
Q ss_pred HHHHcCCcEEEEEcCCC--ChHHHHHHHHHHhcCCCCceEE
Q psy3769 397 EAIESELELVICITEGI--PVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 397 e~~~~gv~~~vi~s~G~--~e~~~~~l~~~a~~~~~gi~vi 435 (974)
++.++|.. +++++.|. ..+..++|.+.|+ ++|.++.
T Consensus 80 ~al~~Gk~-Vvv~s~gAl~d~~~~~~L~~aA~--~~g~~l~ 117 (265)
T PRK13304 80 KSLENGKD-VIIMSVGALADKELFLKLYKLAK--ENNCKIY 117 (265)
T ss_pred HHHHcCCC-EEEEchHHhcCHHHHHHHHHHHH--HcCCEEE
Confidence 99999855 57777653 2334568899999 8898874
No 161
>PRK12458 glutathione synthetase; Provisional
Probab=95.80 E-value=0.06 Score=61.50 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=52.3
Q ss_pred CCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHH--HHHHHHHHHhccccccccCCCCCcee
Q psy3769 17 VTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQ--VEKYTKKILGMQLITSQTNQEGENVF 94 (974)
Q Consensus 17 Ipvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee--~~~a~~~~l~~~~~t~q~~~~g~~~~ 94 (974)
+++|++.+..+.+++.++.++.+++|+|+||..-+||+ ||.++++.++ +....+.+.. -.
T Consensus 139 ~~vP~T~v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~----gV~~v~~~~~~~~~~ile~~~~--------------~~ 200 (338)
T PRK12458 139 EVRPTTHISRNKEYIREFLEESPGDKMILKPLQGSGGQ----GVFLIEKSAQSNLNQILEFYSG--------------DG 200 (338)
T ss_pred CCCCCEEEeCCHHHHHHHHHHcCCCeEEEEECCCCCcc----CeEEEecCChhhHHHHHHHHhh--------------CC
Confidence 68999999999999999988887345999996555555 8888765543 3333332211 02
Q ss_pred EEEEEEEecc--ceeEEEE
Q psy3769 95 CVLIEEYIDI--KKELYIS 111 (974)
Q Consensus 95 ~vLVee~v~~--~~E~ylg 111 (974)
.+++|||++. +.|+.+-
T Consensus 201 ~~ivQeyI~~~~~gDiRv~ 219 (338)
T PRK12458 201 YVIAQEYLPGAEEGDVRIL 219 (338)
T ss_pred CEEEEEcccCCCCCCEEEE
Confidence 5799999974 2444444
No 162
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.78 E-value=0.026 Score=61.88 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=82.7
Q ss_pred cccccCcccccchhhhhccCCCCceEEEE-ecCCCCCc---ccc--cccc------ccchhhhcccCCCc-EEEEEecch
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAG-VNPKKNGQ---KFE--EIPI------FDTVKNAKNETGAT-VSVIYVPAI 389 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~p-VnP~~~g~---~i~--G~~~------y~sl~dip~~~~vD-lavi~vp~~ 389 (974)
+-|.++|+|..+.+.+.+.++. .|-. +.++..++ ++. ++|. |.+++++.+ ..+| ++|=++.|+
T Consensus 5 V~Ga~GkMG~~v~~av~~~~~~---Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~-~~~d~VvIDFT~P~ 80 (275)
T TIGR02130 5 VNGCPGKMGKAVAEAADAAGLE---IVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFA-KYPELICIDYTHPS 80 (275)
T ss_pred EeCCCChHHHHHHHHHhcCCCE---EEeeEccccccccchhhhcccceeeeccccccccHHHHHh-hcCCEEEEECCChH
Confidence 3588899999999988877776 3332 55554222 122 6777 899999874 2388 889999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCc-eEEccC-Cccccc
Q psy3769 390 FATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKT-LLLGPN-CPGLIV 444 (974)
Q Consensus 390 ~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi-~viGPn-c~G~~~ 444 (974)
.+.+.++.|.+.|++. |+-|.|+.+++.+++.+. .++ -++-|| ++|+..
T Consensus 81 ~~~~n~~~~~~~gv~~-ViGTTG~~~~~~~~l~~~-----~~i~~l~apNfSiGv~l 131 (275)
T TIGR02130 81 AVNDNAAFYGKHGIPF-VMGTTGGDREALAKLVAD-----AKHPAVIAPNMAKQIVA 131 (275)
T ss_pred HHHHHHHHHHHCCCCE-EEcCCCCCHHHHHHHHHh-----cCCCEEEECcccHHHHH
Confidence 9999999999999985 788999998776655432 234 466788 677664
No 163
>PRK11469 hypothetical protein; Provisional
Probab=95.68 E-value=0.092 Score=54.78 Aligned_cols=107 Identities=12% Similarity=0.158 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHhhccc---CCcc-cc-cCCCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHH
Q psy3769 644 YIKIIGGFLLFWISIKLLSND---HNYT-TI-ASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGI 718 (974)
Q Consensus 644 ~~~~~gg~~Ll~~~~~~~~~~---~~~~-~~-~~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~ 718 (974)
+-..+|+.+|++++.+|+.+. ++++ +. ....+.| ...+.=++.|+|+.-+-++.+-- +..++.+..
T Consensus 68 ~~~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~----~~l~LaiAtSiDAlavGi~~~~~-----g~~~~~~~~ 138 (188)
T PRK11469 68 WNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFW----LLVTTAIATSLDAMAVGVGLAFL-----QVNIIATAL 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHH----HHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHH
Confidence 556889999999999999864 2111 11 1122333 33345567899999887776642 233333333
Q ss_pred HHHHHHH--HHHHH----HHHHHHHhhhhHHHHHHHHHHHHHHHhhhcc
Q psy3769 719 LFSIPII--IFGSK----LVLILIEKFSSIIILCSILLGYLSGNMIFSD 761 (974)
Q Consensus 719 ~~~i~~l--~~~~~----~~~~~~~~~~~l~~~~~~~l~~ig~~l~~~~ 761 (974)
++++..+ .+.-. .+.+.+.| +.++++..+|..+|+|++++.
T Consensus 139 ~ig~~s~~~~~~G~~lG~~~g~~~g~--~a~~lgG~iLI~iGi~il~~h 185 (188)
T PRK11469 139 AIGCATLIMSTLGMMVGRFIGSIIGK--KAEILGGLVLIGIGVQILWTH 185 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3333222 22222 33345554 467799999999999999864
No 164
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.66 E-value=0.024 Score=54.04 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=69.8
Q ss_pred cccccchhhhhcc--CCCCceEEEEecCCCCC----ccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcC
Q psy3769 329 KTGRFHTNLCLNY--GNGKKAFVAGVNPKKNG----QKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESE 402 (974)
Q Consensus 329 k~G~~v~~~l~~~--g~~g~~~V~pVnP~~~g----~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~g 402 (974)
..|...+..+.+. +++ .+.-++|.... .+-.|.++|.|++++.+...+|+++|++|...-.+.+++|+++|
T Consensus 10 ~~g~~~~~~~~~~~~~~~---v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g 86 (120)
T PF01408_consen 10 SIGRRHLRALLRSSPDFE---VVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAG 86 (120)
T ss_dssp HHHHHHHHHHHHTTTTEE---EEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCcE---EEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcC
Confidence 3455555555544 233 34455554300 12358899999999987668999999999999999999999999
Q ss_pred CcEEEEEcC-CCChHHHHHHHHHHhcCCCCceE
Q psy3769 403 LELVICITE-GIPVRDMLILKNKMKKNNSKTLL 434 (974)
Q Consensus 403 v~~~vi~s~-G~~e~~~~~l~~~a~~~~~gi~v 434 (974)
. .+++=-. ....++.++|.+.++ ++|..+
T Consensus 87 ~-~v~~EKP~~~~~~~~~~l~~~a~--~~~~~~ 116 (120)
T PF01408_consen 87 K-HVLVEKPLALTLEEAEELVEAAK--EKGVKV 116 (120)
T ss_dssp S-EEEEESSSSSSHHHHHHHHHHHH--HHTSCE
T ss_pred C-EEEEEcCCcCCHHHHHHHHHHHH--HhCCEE
Confidence 8 4333222 234556788999999 777664
No 165
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=95.61 E-value=0.31 Score=50.70 Aligned_cols=115 Identities=15% Similarity=0.255 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCcc-----ccc---CCCcHHHHHHHHHH--HHHhhhhchHHHHHHhcccccccccchh
Q psy3769 644 YIKIIGGFLLFWISIKLLSNDHNYT-----TIA---SGKNLIHAIKTIIF--ADLIMSIDNVLAIAGTASQISNKYQMLL 713 (974)
Q Consensus 644 ~~~~~gg~~Ll~~~~~~~~~~~~~~-----~~~---~~~~~~~~v~~I~~--~D~~fs~Dsv~a~~~~t~~~~~~~~~~l 713 (974)
+++++|++||+|+++++++...+.. +.+ ...+++..+..=.+ --++|-+==.+..... + .+..+..+
T Consensus 61 ~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~-~--~~~~~~~~ 137 (191)
T PF01810_consen 61 ILKLLGALYLLYLGYKLLRSKFSSKSSTQSEAKKQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISP-E--YSSTQFLV 137 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcchhhhhhhccccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCc-c--ccHHHHHH
Confidence 6889999999999999998643211 111 11223333221111 1122211111111110 1 11223444
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHh--hhhHHHHHHHHHHHHHHHhhhcc
Q psy3769 714 VIIGILFSIPIIIFGSKLVL----ILIEK--FSSIIILCSILLGYLSGNMIFSD 761 (974)
Q Consensus 714 i~~g~~~~i~~l~~~~~~~~----~~~~~--~~~l~~~~~~~l~~ig~~l~~~~ 761 (974)
..+|.+++...-....-.+. +.+.+ +.++..+...++...|+.++.++
T Consensus 138 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 138 FILGIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555444333333322 22222 34788899999999999998864
No 166
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=95.56 E-value=0.03 Score=60.67 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=65.5
Q ss_pred HHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeee----ecCcccccCeEEEeCCHHHHHHHHHHHHhccccccc
Q psy3769 10 EILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQI----HAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQ 85 (974)
Q Consensus 10 ~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi----~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q 85 (974)
....++|+|+|+.+.++|..++. +.++- +|+++||.. +.-+|.| +..+.|.||.+.++....+.-
T Consensus 120 ~ra~elgl~~P~Ty~v~S~~d~~--~~el~-FPvILKP~mgg~~~~~araK---a~~a~d~ee~k~a~~~a~eei----- 188 (415)
T COG3919 120 NRAEELGLPYPKTYLVNSEIDTL--VDELT-FPVILKPGMGGSVHFEARAK---AFTAADNEEMKLALHRAYEEI----- 188 (415)
T ss_pred HHHHHhCCCCcceEEecchhhhh--hhhee-eeEEecCCCCCcceeehhhh---eeeccCHHHHHHHHHHHHHhc-----
Confidence 34466899999999999866653 45776 899999932 2222333 234778888888777654431
Q ss_pred cCCCCCceeEEEEEEEecccee--EEEEEEEeccCCceeeecc
Q psy3769 86 TNQEGENVFCVLIEEYIDIKKE--LYISFMTDRVQQNIIFMGS 126 (974)
Q Consensus 86 ~~~~g~~~~~vLVee~v~~~~E--~ylgi~~Dr~~~~pvii~s 126 (974)
+| ..++||||++.+.| +......|. +.||..|.
T Consensus 189 -gp-----DnvvvQe~IPGGgE~qfsyaAlw~~--g~pvaeft 223 (415)
T COG3919 189 -GP-----DNVVVQEFIPGGGENQFSYAALWDK--GHPVAEFT 223 (415)
T ss_pred -CC-----CceEEEEecCCCCcccchHHHHHhC--CCchhhhh
Confidence 22 58899999998865 444455663 56766665
No 167
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.47 E-value=0.05 Score=55.66 Aligned_cols=112 Identities=21% Similarity=0.413 Sum_probs=79.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCeEEEEEccccccCcccccchh--hhhccCCCCceEEEEecCCCCCccccccccccchhh
Q psy3769 295 GGGATIKTITEAFKIMMQQNNLKTILVNIFGITGKTGRFHTN--LCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKN 372 (974)
Q Consensus 295 GG~a~~~~v~~a~~~il~~~~~~~i~vni~G~~~k~G~~v~~--~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~d 372 (974)
|=+-+.+.....|..+|.+.+..-+. ++|. +..|+.++. ...+.|++-. -++=++|+.-|.++.++|+|. +++
T Consensus 63 G~GYnV~~L~~ff~~~Lg~~~~tnvi--iVG~-GnlG~All~Y~f~~~~~~~iv-~~FDv~~~~VG~~~~~v~V~~-~d~ 137 (211)
T COG2344 63 GYGYNVKYLRDFFDDLLGQDKTTNVI--IVGV-GNLGRALLNYNFSKKNGMKIV-AAFDVDPDKVGTKIGDVPVYD-LDD 137 (211)
T ss_pred CCCccHHHHHHHHHHHhCCCcceeEE--EEcc-ChHHHHHhcCcchhhcCceEE-EEecCCHHHhCcccCCeeeec-hHH
Confidence 34567788888888888866554432 2341 234444332 3335566621 347899988789999999884 555
Q ss_pred h---cccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcC
Q psy3769 373 A---KNETGATVSVIYVPAIFATSAIWEAIESELELVICITE 411 (974)
Q Consensus 373 i---p~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~ 411 (974)
+ ..++.+|+++++||++++-++.+...++|||+++=+++
T Consensus 138 le~~v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 138 LEKFVKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred HHHHHHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccc
Confidence 5 33458999999999999999999999999999776664
No 168
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.089 Score=57.85 Aligned_cols=86 Identities=28% Similarity=0.416 Sum_probs=65.3
Q ss_pred HHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccCC
Q psy3769 9 KEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQ 88 (974)
Q Consensus 9 k~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~~ 88 (974)
++||++.||+.|+ ..++|+| +. .||.||.+-..||| |-.++.|++|..+.+++++....+|.
T Consensus 129 ~~lLekAgi~~P~--~~~~Pee-------Id-r~VIVK~pgAkggR----GyFiA~s~eef~ek~e~l~~~gvi~~---- 190 (361)
T COG1759 129 YKLLEKAGLRIPK--KYKSPEE-------ID-RPVIVKLPGAKGGR----GYFIASSPEEFYEKAERLLKRGVITE---- 190 (361)
T ss_pred HHHHHHcCCCCCc--ccCChHH-------cC-CceEEecCCccCCc----eEEEEcCHHHHHHHHHHHHHcCCcch----
Confidence 5799999999997 6678886 44 69999997666666 88899999999999999998765432
Q ss_pred CCCceeEEEEEEEeccceeEEEEEEEe
Q psy3769 89 EGENVFCVLIEEYIDIKKELYISFMTD 115 (974)
Q Consensus 89 ~g~~~~~vLVee~v~~~~E~ylgi~~D 115 (974)
+..+...|||++- |.-+|+-....
T Consensus 191 --edlkna~IeEYv~-G~~f~~~yFyS 214 (361)
T COG1759 191 --EDLKNARIEEYVV-GAPFYFHYFYS 214 (361)
T ss_pred --hhhhhceeeEEee-ccceeeeeeec
Confidence 3356778888885 44455544433
No 169
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=95.07 E-value=0.32 Score=54.99 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=53.1
Q ss_pred HHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCC-HHHHHHHHHHHHhccccccccCCCCC
Q psy3769 13 RKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQS-LEQVEKYTKKILGMQLITSQTNQEGE 91 (974)
Q Consensus 13 ~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s-~ee~~~a~~~~l~~~~~t~q~~~~g~ 91 (974)
..+..++|++.++.+++++.++.++.| |+|+||-.-++|+ ||..+++ ..++... .+.+... +
T Consensus 128 ~~~~~~vP~T~v~~~~~~~~~~~~~~g--~vVvKPl~G~~G~----gv~~v~~~~~~~~~~-~~~~~~~---------~- 190 (312)
T TIGR01380 128 LQFPKVIPPTLVTRDKAEIRAFLAEHG--DIVLKPLDGMGGE----GIFRLDPGDPNFNSI-LETMTQR---------G- 190 (312)
T ss_pred hhCcCCCCCEEEeCCHHHHHHHHHHcC--CEEEEECCCCCCc----eEEEEcCCCccHHHH-HHHHHhc---------c-
Confidence 344458999999999999999998887 8999996555555 7877654 2223222 2222111 1
Q ss_pred ceeEEEEEEEecc--ceeEEEEE
Q psy3769 92 NVFCVLIEEYIDI--KKELYISF 112 (974)
Q Consensus 92 ~~~~vLVee~v~~--~~E~ylgi 112 (974)
-..+++|||++. +.|+.+-+
T Consensus 191 -~~~~~vQ~yI~~~~~~D~Rv~v 212 (312)
T TIGR01380 191 -REPVMAQRYLPEIKEGDKRILL 212 (312)
T ss_pred -CCcEEEEeccccccCCCEEEEE
Confidence 136899999973 35655544
No 170
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.05 E-value=0.067 Score=58.97 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=72.0
Q ss_pred cccccCcccccchhhhhcc-CCCCceEEEEecCCCCCc---c-c-cccccccchhhhcccCCCcEEEEEecchhHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNY-GNGKKAFVAGVNPKKNGQ---K-F-EEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~-g~~g~~~V~pVnP~~~g~---~-i-~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
|+|. |+.|..+++.+.+. +++ .+..+.+....+ + . .+.++|.+++++ . ..+|+++.+.|+....+...
T Consensus 6 IiG~-G~iG~~~~~~l~~~~~~~---l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~DvVve~t~~~~~~e~~~ 79 (265)
T PRK13303 6 MIGF-GAIGAAVLELLEHDPDLR---VDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-P-QRPDLVVECAGHAALKEHVV 79 (265)
T ss_pred EECC-CHHHHHHHHHHhhCCCce---EEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-c-cCCCEEEECCCHHHHHHHHH
Confidence 4564 67888888888764 333 233322221011 1 1 267889999998 2 47999999999999999999
Q ss_pred HHHHcCCcEEEEEcCC-CChHH-HHHHHHHHhcCCCCceEE
Q psy3769 397 EAIESELELVICITEG-IPVRD-MLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 397 e~~~~gv~~~vi~s~G-~~e~~-~~~l~~~a~~~~~gi~vi 435 (974)
+|+++|.. +++.+.| +...+ ..+|.+.|+ ++|.++.
T Consensus 80 ~aL~aGk~-Vvi~s~~Al~d~~~~~~L~~~A~--~~g~~l~ 117 (265)
T PRK13303 80 PILKAGID-CAVISVGALADEALRERLEQAAE--AGGARLH 117 (265)
T ss_pred HHHHcCCC-EEEeChHHhcCHHHHHHHHHHHH--HCCCEEE
Confidence 99999966 5677766 44333 467889999 8876643
No 171
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.87 E-value=0.051 Score=60.08 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=71.5
Q ss_pred ccccccCcccccchhhhhcc--CCCCceEEEEecCCCCCc-c---ccc-cccccchhhhcccCCCcEEEEEecchhHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNY--GNGKKAFVAGVNPKKNGQ-K---FEE-IPIFDTVKNAKNETGATVSVIYVPAIFATSA 394 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~--g~~g~~~V~pVnP~~~g~-~---i~G-~~~y~sl~dip~~~~vDlavi~vp~~~v~~~ 394 (974)
.++| .+..|..+.+++.+. +++ .++-.++..... + -.| .+.|.+++++.. .+|++++++|.+...+.
T Consensus 10 GIIG-~G~IG~~~a~~L~~~~~~~e---l~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~~~h~e~ 83 (271)
T PRK13302 10 AIAG-LGAIGKAIAQALDRGLPGLT---LSAVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPASVLRAI 83 (271)
T ss_pred EEEC-ccHHHHHHHHHHHhcCCCeE---EEEEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCcHHHHHH
Confidence 3456 356777788887753 444 333344432001 1 124 467899999975 79999999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 395 IWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 395 v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
..+|+++|. .+++.+.|-. .+.++|.+.|+ ++|.++.
T Consensus 84 ~~~aL~aGk-~Vi~~s~gal-~~~~~L~~~A~--~~g~~l~ 120 (271)
T PRK13302 84 VEPVLAAGK-KAIVLSVGAL-LRNEDLIDLAR--QNGGQII 120 (271)
T ss_pred HHHHHHcCC-cEEEecchhH-HhHHHHHHHHH--HcCCEEE
Confidence 999999995 4566665522 24578899999 8888873
No 172
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=94.82 E-value=0.34 Score=50.54 Aligned_cols=162 Identities=19% Similarity=0.310 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHhhcccCC--ccc
Q psy3769 595 GSTDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLN-L--KYIKIIGGFLLFWISIKLLSNDHN--YTT 669 (974)
Q Consensus 595 s~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~-~--~~~~~~gg~~Ll~~~~~~~~~~~~--~~~ 669 (974)
..|+.++..+.+.+.+.+.|++-++.|-.-+...=+..-+++...++ + .|+.=+-|++=+++++|.+...++ +++
T Consensus 5 niDd~~iL~~~F~~~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~~~~~~e~~ 84 (191)
T PF03596_consen 5 NIDDIVILLLFFAQVKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFSGEDDDEEE 84 (191)
T ss_pred cHHHHHHHHHHHhcccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 46888888888887776667778888843333322222222223332 2 477555689999999997764322 111
Q ss_pred c------cCCCcHHHHHHHHHHHHHhhhhchH----HHHHHhcccccccccchhhHHHHHHHHHHHHH--HH------HH
Q psy3769 670 I------ASGKNLIHAIKTIIFADLIMSIDNV----LAIAGTASQISNKYQMLLVIIGILFSIPIIIF--GS------KL 731 (974)
Q Consensus 670 ~------~~~~~~~~~v~~I~~~D~~fs~Dsv----~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~--~~------~~ 731 (974)
. ++.++.+..+..|-++. +=||+ |-=+..+- .-++++-.+|.+++..| ++ ..
T Consensus 85 ~~~~~~~~~~~~~i~~Va~iTiAn---GgDNigIYiP~Fa~~s~-------~~l~v~l~vF~ilv~v~c~la~~l~~~p~ 154 (191)
T PF03596_consen 85 AEEKLNSPKSNSLILTVAAITIAN---GGDNIGIYIPLFASLSL-------AELIVILIVFLILVGVWCFLAYKLARIPI 154 (191)
T ss_pred cccccccccccchhHHhhhhhhhc---CCCeEEEeehhhhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 1 12235555555555554 66764 11111111 22333333333333222 22 23
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhcccchhhHh
Q psy3769 732 VLILIEKFSSIIILCSILLGYLSGNMIFSDQSLTQLQ 768 (974)
Q Consensus 732 ~~~~~~~~~~l~~~~~~~l~~ig~~l~~~~~~~~~~~ 768 (974)
+.++++||-. ++.-.++..+|+-.+.|...+.+++
T Consensus 155 i~~~leryg~--~l~p~v~I~LGi~Il~esgti~~li 189 (191)
T PF03596_consen 155 IAEFLERYGR--WLVPIVYIGLGIYILIESGTIQHLI 189 (191)
T ss_pred HHHHHHHhcc--cHHHHHHHHhCceeeEeCCHHHHHH
Confidence 4556777654 3445566677887788877776654
No 173
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=94.34 E-value=0.94 Score=50.54 Aligned_cols=184 Identities=15% Similarity=0.208 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCCCCCcee-----------eCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHH------H
Q psy3769 6 YQGKEILRKFNVTIPKGIL-----------CMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLE------Q 68 (974)
Q Consensus 6 ~~ak~lL~~~GIpvp~~~~-----------~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~e------e 68 (974)
...+++++++|||||+... ..+.++..+..+.....++|+||..-.+|+ ||.++...+ .
T Consensus 28 ~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~----Gi~~i~~~~~~~~~~~ 103 (285)
T PF14397_consen 28 LLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGK----GILVIDRRDGSEINRD 103 (285)
T ss_pred HHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCcc----CEEEEEeecCcccccc
Confidence 4678999999999999322 135667777777752258999996444444 777743322 1
Q ss_pred HHHHHHHHHhccccccccCCCCCceeEEEEEEEeccc-----------eeEEEEEEEeccCCceee----eccCCCCcce
Q psy3769 69 VEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIK-----------KELYISFMTDRVQQNIIF----MGSNKGGMDI 133 (974)
Q Consensus 69 ~~~a~~~~l~~~~~t~q~~~~g~~~~~vLVee~v~~~-----------~E~ylgi~~Dr~~~~pvi----i~s~~GGv~i 133 (974)
.......+. .. .+. .++|||++... .-+.+-..+|. ....++ =++ .+|..+
T Consensus 104 ~~~~~~~~~-~~--------~~~---~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg-~~~~~~ 169 (285)
T PF14397_consen 104 ISALYAGLE-SL--------GGK---DYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLG-RGGSGV 169 (285)
T ss_pred hhHHHHHHH-hc--------CCc---cEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeC-CCCCcc
Confidence 111111111 10 001 67777766321 12223333443 111111 112 333333
Q ss_pred eeccccCCcceEEEEeCCCCCCCHHHH-----HHHH-------HHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeecee
Q psy3769 134 EIISKNSPELLYKTIIDPLIGLTKNNI-----DNIS-------KKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPL 201 (974)
Q Consensus 134 E~~~d~~p~~i~~~~i~p~~gl~~~~a-----~~~~-------~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL 201 (974)
..+.. -. .-..+|...|+..... ..+- .-.|+.=...+++.+++.+..+.|......--| +
T Consensus 170 DN~~~---Gg-i~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWD---v 242 (285)
T PF14397_consen 170 DNFHQ---GG-IGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWD---V 242 (285)
T ss_pred cccCC---CC-EEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEE---E
Confidence 33321 11 2245555444333210 0000 000333356889999999999888877777778 7
Q ss_pred EEccCCcEEEEEEE
Q psy3769 202 VINSKNKIISLDIK 215 (974)
Q Consensus 202 ~v~~~g~~~alDak 215 (974)
++|++| ++.+.+-
T Consensus 243 ait~~G-p~llE~N 255 (285)
T PF14397_consen 243 AITEDG-PVLLEGN 255 (285)
T ss_pred EEcCCC-cEEEEee
Confidence 888888 7666553
No 174
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=93.98 E-value=0.17 Score=54.50 Aligned_cols=70 Identities=7% Similarity=-0.009 Sum_probs=57.6
Q ss_pred cccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCC-Ch-HHHHHHHHHHhcCCCCceEE
Q psy3769 362 EEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGI-PV-RDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 362 ~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~-~e-~~~~~l~~~a~~~~~gi~vi 435 (974)
.|.++|.+++++.. ..+|++++++|.....+...+|+++|.. +++++.|- .. ++.++|.+.|+ ++|.++.
T Consensus 22 ~g~~~~~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkh-Vl~~s~gAlad~e~~~~l~~aA~--~~g~~l~ 93 (229)
T TIGR03855 22 CGAKIVSDFDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKD-LLIMSVGALADRELRERLREVAR--SSGRKVY 93 (229)
T ss_pred hCCceECCHHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCC-EEEECCcccCCHHHHHHHHHHHH--hcCCEEE
Confidence 46789999999853 3799999999999999999999999965 67788763 33 44678999999 8888765
No 175
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.45 E-value=0.069 Score=54.30 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=69.3
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCC-Ccc--ccccccccchhhhcccCCCcEEEEEecc-hhHHHHHHH--
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKN-GQK--FEEIPIFDTVKNAKNETGATVSVIYVPA-IFATSAIWE-- 397 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~-g~~--i~G~~~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~e-- 397 (974)
+| .+..|..+.++|.+.||+ |+..|+... -++ -.|.....|.+|+.+ ..|++++++|. +.+.+++.+
T Consensus 7 IG-lG~mG~~~a~~L~~~g~~----v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~--~~dvvi~~v~~~~~v~~v~~~~~ 79 (163)
T PF03446_consen 7 IG-LGNMGSAMARNLAKAGYE----VTVYDRSPEKAEALAEAGAEVADSPAEAAE--QADVVILCVPDDDAVEAVLFGEN 79 (163)
T ss_dssp E---SHHHHHHHHHHHHTTTE----EEEEESSHHHHHHHHHTTEEEESSHHHHHH--HBSEEEE-SSSHHHHHHHHHCTT
T ss_pred Ec-hHHHHHHHHHHHHhcCCe----EEeeccchhhhhhhHHhhhhhhhhhhhHhh--cccceEeecccchhhhhhhhhhH
Confidence 45 367889999999999997 555555420 011 148889999999987 78999999998 556777776
Q ss_pred HHH-cCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEc
Q psy3769 398 AIE-SELELVICITEGIPVRDMLILKNKMKKNNSKTLLLG 436 (974)
Q Consensus 398 ~~~-~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viG 436 (974)
... ..-..+++-.+-...+..+++.+.++ ++|++++-
T Consensus 80 i~~~l~~g~iiid~sT~~p~~~~~~~~~~~--~~g~~~vd 117 (163)
T PF03446_consen 80 ILAGLRPGKIIIDMSTISPETSRELAERLA--AKGVRYVD 117 (163)
T ss_dssp HGGGS-TTEEEEE-SS--HHHHHHHHHHHH--HTTEEEEE
T ss_pred HhhccccceEEEecCCcchhhhhhhhhhhh--hccceeee
Confidence 444 33455556555555555677778887 88888773
No 176
>COG2119 Predicted membrane protein [Function unknown]
Probab=93.40 E-value=2.8 Score=43.11 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=101.8
Q ss_pred hhHHHHHHHHcccCCccccceEEEehhHHHHH-HHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHhhcccCCcccc-
Q psy3769 596 STDAIIIALACRNLQPNIRTKGIIFGTFGAIA-IRIILVIFSINLLNL-K--YIKIIGGFLLFWISIKLLSNDHNYTTI- 670 (974)
Q Consensus 596 ~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~-~R~~~~~~~~~ll~~-~--~~~~~gg~~Ll~~~~~~~~~~~~~~~~- 670 (974)
.|.-..+++... -+.|++-++.|+.+|.. +-++...++.+...+ | ++..+.|..-+..|++++.+++++++.
T Consensus 17 GDKT~lia~llA---~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~~e~ 93 (190)
T COG2119 17 GDKTQLIAMLLA---MRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDDEEA 93 (190)
T ss_pred ccHHHHHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 466666666544 34568889999998887 777777888888766 4 677788887778899999876433222
Q ss_pred ---cCCCcHHHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-hh--hHHH
Q psy3769 671 ---ASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEK-FS--SIII 744 (974)
Q Consensus 671 ---~~~~~~~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~-~~--~l~~ 744 (974)
++...|..+++++-++.+ .=-+=+|.++++.+ ++.++.|++|..++...--...-++-+++.+ +| .+..
T Consensus 94 ~~~~~~~~f~~tfi~~FlaE~--GDKTQiATIaLaA~---~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~ 168 (190)
T COG2119 94 QAASPRGVFVTTFITFFLAEL--GDKTQIATIALAAD---YHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRF 168 (190)
T ss_pred cccccccHHHHHHHHHHHHHh--ccHHHHHHHHHhhc---CCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 222345566665555432 22356677777763 4456999999888877766666666555443 22 3445
Q ss_pred HHHHHHHHHHHHhhhc
Q psy3769 745 LCSILLGYLSGNMIFS 760 (974)
Q Consensus 745 ~~~~~l~~ig~~l~~~ 760 (974)
+++.+....|..++.+
T Consensus 169 ~aallFl~fal~~~~~ 184 (190)
T COG2119 169 IAALLFLIFALVLLWQ 184 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555566666655553
No 177
>PRK10958 leucine export protein LeuE; Provisional
Probab=93.19 E-value=2 Score=45.75 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=38.3
Q ss_pred cChhHHHHHHHHcccCCccccceEEEehhHHHHH--HHHHHHHH-HHHHH-HHH----HHHHHHHHHHHHHHHHhhccc
Q psy3769 594 LGSTDAIIIALACRNLQPNIRTKGIIFGTFGAIA--IRIILVIF-SINLL-NLK----YIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 594 Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~--~R~~~~~~-~~~ll-~~~----~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
-+-+|++++....+ +++++++..+.+-+.. +=+.+..+ ...++ ..| .++++|++||+|.|+|.+++.
T Consensus 24 PGP~~~~v~~~~~~----~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~ 98 (212)
T PRK10958 24 PGPNSLYVLSTAAR----RGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAA 98 (212)
T ss_pred CchHHHHHHHHHHh----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566655555433 3455555444433322 22222222 22344 334 588999999999999999764
No 178
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=92.94 E-value=3.3 Score=43.46 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=37.2
Q ss_pred ChhHHHHHHHHcccCCccccceEE--EehhHHHHHHHHHHHHHHH-HHH-HHH----HHHHHHHHHHHHHHHHhhccc
Q psy3769 595 GSTDAIIIALACRNLQPNIRTKGI--IFGTFGAIAIRIILVIFSI-NLL-NLK----YIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 595 s~Dn~~vial~~~~lp~~~r~~ai--~~g~~ga~~~R~~~~~~~~-~ll-~~~----~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
+-+|++++....+ .++++++ ..|...+..+=+.+...+. .++ +.| .++++|++||+|.|+|+++..
T Consensus 21 GP~~~~v~~~~~~----~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 21 GPNNILALSSATS----HGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP 94 (195)
T ss_pred ChHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567665555443 2344443 2333333333233232333 444 444 488999999999999999864
No 179
>KOG0370|consensus
Probab=92.93 E-value=0.41 Score=59.15 Aligned_cols=170 Identities=15% Similarity=0.240 Sum_probs=102.5
Q ss_pred HHHHHHcCCCCCCceeeCCHHHHHHHHHHcCCCcEEEEee-eecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccC
Q psy3769 9 KEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQ-IHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTN 87 (974)
Q Consensus 9 k~lL~~~GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~q-i~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~ 87 (974)
-++|.+.|+..|+|.-.++.+||.++|++.| |||.+.|. ++.| - ..-++.+.++++...++.-.-
T Consensus 1038 S~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~Vg-YP~lvRPSYVLSG-a----AMnv~~~~~dl~~~L~~A~~v-------- 1103 (1435)
T KOG0370|consen 1038 SRMLDSIGVDQPAWKELTSLEEAKKFAEKVG-YPVLVRPSYVLSG-A----AMNVVYSESDLKSYLEQASAV-------- 1103 (1435)
T ss_pred HHHHHHcCCCchhhhhhccHHHHHHHHHhcC-CceEecccceecc-h----hhhhhhcHHHHHHHHHHHhhc--------
Confidence 3789999999999999999999999999999 99999994 4441 1 233478889988876664221
Q ss_pred CCCCceeEEEEEEEeccceeEEEEEEEeccCCceeeeccCCCCcceeeccccCCcceEEEEeCCCCCCCHHHHHHHHHHC
Q psy3769 88 QEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNISKKI 167 (974)
Q Consensus 88 ~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~pvii~s~~GGv~iE~~~d~~p~~i~~~~i~p~~gl~~~~a~~~~~~l 167 (974)
.+-+.|.+.+|+...+|+-+-..- ++..-.+...| -++|.-.-.+-|+ ++.++| .
T Consensus 1104 ---s~dhPVVisKfie~AkEidvDAVa-~~G~~~~haiS----EHvEnAGVHSGDA--tlv~Pp-q-------------- 1158 (1435)
T KOG0370|consen 1104 ---SPDHPVVISKFIEGAKEIDVDAVA-SDGKVLVHAIS----EHVENAGVHSGDA--TLVLPP-Q-------------- 1158 (1435)
T ss_pred ---CCCCCEEhHHhhcccceechhhhc-cCCeEEEEehh----hhhhcccccCCce--eEeCCc-h--------------
Confidence 112467899999989996654321 12222233334 1233322111111 234444 1
Q ss_pred CCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEeeeCc
Q psy3769 168 SIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTN 221 (974)
Q Consensus 168 g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ldd~ 221 (974)
.+++..++++.++..++.+.|.=.+-.-+- ++. ++.++-+..+-++....
T Consensus 1159 ~l~~~t~~rik~i~~ki~~a~~itGPfN~Q---~i~-k~n~lkVIECN~RaSRS 1208 (1435)
T KOG0370|consen 1159 DLSADTLERIKDIAAKVAKALKITGPFNMQ---IIA-KDNELKVIECNVRASRS 1208 (1435)
T ss_pred hcCHHHHHHHHHHHHHHHHHhcccCCceEE---EEe-cCCeEEEEEeeeeeecc
Confidence 234556777888888888776443211111 122 33346666666555443
No 180
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=92.64 E-value=3 Score=44.28 Aligned_cols=159 Identities=14% Similarity=0.201 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHcccCCccccceEEEehhHHHH--HHHHHHHHHH-HHHH-HHH----HHHHHHHHHHHHHHHHhhcccCC
Q psy3769 595 GSTDAIIIALACRNLQPNIRTKGIIFGTFGAI--AIRIILVIFS-INLL-NLK----YIKIIGGFLLFWISIKLLSNDHN 666 (974)
Q Consensus 595 s~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~--~~R~~~~~~~-~~ll-~~~----~~~~~gg~~Ll~~~~~~~~~~~~ 666 (974)
+-||+.+++...+ ++++.++....+-+. ..=+++..++ +.++ ..+ .++++|++||+|.++|+++...+
T Consensus 21 GP~~~~v~~~~~~----~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~~~ 96 (208)
T COG1280 21 GPDNLLVLARSLS----RGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAGGA 96 (208)
T ss_pred CccHHHHHHHHHH----hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4466555555443 344444444433222 2222222332 2334 333 68999999999999999986432
Q ss_pred c---cccc--CCC---cHHHHHHHHHHH---HHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHH------
Q psy3769 667 Y---TTIA--SGK---NLIHAIKTIIFA---DLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGS------ 729 (974)
Q Consensus 667 ~---~~~~--~~~---~~~~~v~~I~~~---D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~------ 729 (974)
. ++.. ... .+...+. +.+. -++|=+--.+..+..+.+ ......++.+.++.+....+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~f~~G~~-~~l~NPK~~lf~la~~pqfv~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (208)
T COG1280 97 ALAEEAAGAPSSSRRKAFRRGLL-VNLLNPKAILFFLAFLPQFVDPGAG---LVLLQALILGLVFILVGFVVLALYALLA 172 (208)
T ss_pred cccccccccccchhHHHHHHHHH-HHhhCcHHHHHHHHHHhhhcCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 111 1222222 1221 122222222222222221 0011233333333333322222
Q ss_pred HHHHHHHH---hhhhHHHHHHHHHHHHHHHhhhcc
Q psy3769 730 KLVLILIE---KFSSIIILCSILLGYLSGNMIFSD 761 (974)
Q Consensus 730 ~~~~~~~~---~~~~l~~~~~~~l~~ig~~l~~~~ 761 (974)
....+++. ...++..+...++...|++++.+.
T Consensus 173 ~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 173 ARLRRLLRRPRASRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445666 477888899999999999998753
No 181
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=92.64 E-value=0.36 Score=55.12 Aligned_cols=97 Identities=9% Similarity=0.079 Sum_probs=66.4
Q ss_pred ccccchhhhhcc--CCCCceEEEEecCCCC-C---ccccccccccchhhhcccCCCcEEEEEecc----hhHHHHHHHHH
Q psy3769 330 TGRFHTNLCLNY--GNGKKAFVAGVNPKKN-G---QKFEEIPIFDTVKNAKNETGATVSVIYVPA----IFATSAIWEAI 399 (974)
Q Consensus 330 ~G~~v~~~l~~~--g~~g~~~V~pVnP~~~-g---~~i~G~~~y~sl~dip~~~~vDlavi~vp~----~~v~~~v~e~~ 399 (974)
+|...++.+.+. +++ .+.-+.++.. . .+-.|++.|.|++|+++ .+|+++|++|. ..-.+...+|+
T Consensus 13 ~G~~h~~al~~~~~~~e---LvaV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~~~H~e~a~~aL 87 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFE---LAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQGSALARALL 87 (343)
T ss_pred HHHHHHHHHHhCCCCcE---EEEEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCCccHHHHHHHHH
Confidence 566666666543 344 3444444320 0 12348899999999986 78888888753 45678999999
Q ss_pred HcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 400 ESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 400 ~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
++|. + |+.---+..++.++|++.|+ ++|+.+.
T Consensus 88 ~aGk-H-VL~EKPla~~Ea~el~~~A~--~~g~~l~ 119 (343)
T TIGR01761 88 ARGI-H-VLQEHPLHPRDIQDLLRLAE--RQGRRYL 119 (343)
T ss_pred hCCC-e-EEEcCCCCHHHHHHHHHHHH--HcCCEEE
Confidence 9994 4 34444455667789999999 9998866
No 182
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=92.57 E-value=0.41 Score=50.95 Aligned_cols=107 Identities=21% Similarity=0.362 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHhhcCC-eEEEEEccccccCcccccchhhh--hccCCCCceEE--EEecCCCCCcccccccccc--c
Q psy3769 297 GATIKTITEAFKIMMQQNN-LKTILVNIFGITGKTGRFHTNLC--LNYGNGKKAFV--AGVNPKKNGQKFEEIPIFD--T 369 (974)
Q Consensus 297 ~a~~~~v~~a~~~il~~~~-~~~i~vni~G~~~k~G~~v~~~l--~~~g~~g~~~V--~pVnP~~~g~~i~G~~~y~--s 369 (974)
+-+...+.+-++.++.... .+++ |+| .+..|..+.+.+ ...||+ .+ +-.+|...+..+.|.++++ +
T Consensus 65 gy~v~~l~~~~~~~l~~~~~~rV~---IIG-aG~iG~~l~~~~~~~~~g~~---ivgv~D~d~~~~~~~i~g~~v~~~~~ 137 (213)
T PRK05472 65 GYNVEELLEFIEKILGLDRTWNVA---LVG-AGNLGRALLNYNGFEKRGFK---IVAAFDVDPEKIGTKIGGIPVYHIDE 137 (213)
T ss_pred CeeHHHHHHHHHHHhCCCCCcEEE---EEC-CCHHHHHHHHhhhcccCCcE---EEEEEECChhhcCCEeCCeEEcCHHH
Confidence 3444555556666664333 2333 456 234454444432 245666 33 3335655455677777753 4
Q ss_pred hhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEc
Q psy3769 370 VKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICIT 410 (974)
Q Consensus 370 l~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s 410 (974)
+.++..++.+|.+++++|.....++.+.|.++|+++++.++
T Consensus 138 l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~ 178 (213)
T PRK05472 138 LEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFA 178 (213)
T ss_pred HHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecC
Confidence 55554445799999999999999999999999999976655
No 183
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=91.75 E-value=0.46 Score=53.82 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=55.4
Q ss_pred ccc-ccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCC--ChHHHHHHHHHHhcCCCCceE-Ecc
Q psy3769 362 EEI-PIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGI--PVRDMLILKNKMKKNNSKTLL-LGP 437 (974)
Q Consensus 362 ~G~-~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~--~e~~~~~l~~~a~~~~~gi~v-iGP 437 (974)
.|+ ++|.|++++-+..++|+++|++|...-.+.+.+|+++|. +| ++---+ ..++.++|.++|+ ++|+.+ +|-
T Consensus 50 ~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hV-l~EKPla~t~~ea~~l~~~a~--~~~~~l~v~~ 125 (342)
T COG0673 50 FGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGK-HV-LCEKPLALTLEEAEELVELAR--KAGVKLMVGF 125 (342)
T ss_pred cCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EE-EEcCCCCCCHHHHHHHHHHHH--HcCCceeeeh
Confidence 466 499999999876569999999999999999999999995 43 333222 3445678999999 877654 343
Q ss_pred C
Q psy3769 438 N 438 (974)
Q Consensus 438 n 438 (974)
|
T Consensus 126 ~ 126 (342)
T COG0673 126 N 126 (342)
T ss_pred h
Confidence 3
No 184
>PRK09304 arginine exporter protein; Provisional
Probab=91.71 E-value=6.6 Score=41.54 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q psy3769 644 YIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 644 ~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
.++++|++||+|.|||+++..
T Consensus 71 ~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 71 LVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999753
No 185
>PRK10206 putative oxidoreductase; Provisional
Probab=90.46 E-value=0.74 Score=52.73 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=55.2
Q ss_pred ccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcC-CCChHHHHHHHHHHhcCCCCceEE
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITE-GIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~-G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
+.+.|.|++|+-+...+|+++|++|...-.+.+.+|+++| |++++=-. ....++.++|.+.|+ ++|+.+.
T Consensus 49 ~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPla~~~~ea~~l~~~a~--~~~~~l~ 119 (344)
T PRK10206 49 HIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPFTPTLAEAKELFALAK--SKGLTVT 119 (344)
T ss_pred CCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCCcCCHHHHHHHHHHHH--HhCCEEE
Confidence 4788999999986568999999999999999999999999 55444211 223455678999999 8888753
No 186
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.25 E-value=0.5 Score=46.14 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=53.2
Q ss_pred ccccccCcccccchhhhhccCCCCceEEEEecCCCC-C-----ccccccccccchhhhcccCCCcEEEEEecchhHHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKN-G-----QKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAI 395 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~-g-----~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v 395 (974)
+|+| .+|.|..+-+.+.+.||. |..|.-+.. . ..+.+ ..+.++.|+.+ +.|+.+|++|.+.+.++.
T Consensus 14 ~iIG-aGrVG~~La~aL~~ag~~----v~~v~srs~~sa~~a~~~~~~-~~~~~~~~~~~--~aDlv~iavpDdaI~~va 85 (127)
T PF10727_consen 14 GIIG-AGRVGTALARALARAGHE----VVGVYSRSPASAERAAAFIGA-GAILDLEEILR--DADLVFIAVPDDAIAEVA 85 (127)
T ss_dssp EEEC-TSCCCCHHHHHHHHTTSE----EEEESSCHH-HHHHHHC--TT------TTGGGC--C-SEEEE-S-CCHHHHHH
T ss_pred EEEC-CCHHHHHHHHHHHHCCCe----EEEEEeCCccccccccccccc-ccccccccccc--cCCEEEEEechHHHHHHH
Confidence 4677 478888888888888886 555543320 0 11233 34557778765 899999999999999999
Q ss_pred HHHHHc---CCcEEEEEcCCCChH
Q psy3769 396 WEAIES---ELELVICITEGIPVR 416 (974)
Q Consensus 396 ~e~~~~---gv~~~vi~s~G~~e~ 416 (974)
++..+. .-..+|+.++|--..
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--G
T ss_pred HHHHHhccCCCCcEEEECCCCChH
Confidence 999876 345689999986443
No 187
>PRK11579 putative oxidoreductase; Provisional
Probab=90.24 E-value=0.76 Score=52.59 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=54.3
Q ss_pred ccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcC-CCChHHHHHHHHHHhcCCCCceE
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITE-GIPVRDMLILKNKMKKNNSKTLL 434 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~-G~~e~~~~~l~~~a~~~~~gi~v 434 (974)
+.++|.|++++-+..++|+++|++|...-.+.+.+|+++| |++++=-+ ....++.++|.+.|+ ++|+.+
T Consensus 49 ~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPla~t~~ea~~l~~~a~--~~g~~l 118 (346)
T PRK11579 49 TVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPFTVTLSQARELDALAK--SAGRVL 118 (346)
T ss_pred CCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCCCCCHHHHHHHHHHHH--HhCCEE
Confidence 5678999999986568999999999999999999999999 55444211 233455678999999 888775
No 188
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.19 E-value=0.61 Score=52.32 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=68.9
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCC-cc--ccccccccchhhhccc-CCCcEEEEEecch-hHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG-QK--FEEIPIFDTVKNAKNE-TGATVSVIYVPAI-FATSAIWE 397 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g-~~--i~G~~~y~sl~dip~~-~~vDlavi~vp~~-~v~~~v~e 397 (974)
++| .+..|..+.+++.+.|++ |...|++... ++ -.|..++.|.+++.+. ...|++++++|.+ .+.+++++
T Consensus 5 ~IG-lG~mG~~mA~~L~~~g~~----v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 5 LIG-LGKMGGNMAERLREDGHE----VVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred EEc-ccHHHHHHHHHHHhCCCE----EEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence 345 456788888999988887 4445554200 11 1377888999988652 1269999999997 78888877
Q ss_pred HHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 398 AIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 398 ~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
.... .-+.+++-.+........++.+.++ ++|++.+
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~--~~g~~~v 116 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELA--ERGIHYV 116 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHH--HcCCeEE
Confidence 6543 2334555555554455566677777 7777544
No 189
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=90.07 E-value=3.9 Score=42.22 Aligned_cols=20 Identities=40% Similarity=0.748 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy3769 644 YIKIIGGFLLFWISIKLLSN 663 (974)
Q Consensus 644 ~~~~~gg~~Ll~~~~~~~~~ 663 (974)
.++++|++||+|.|+++++.
T Consensus 56 ~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 56 VIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 58899999999999999974
No 190
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=90.04 E-value=1.2 Score=51.87 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=63.7
Q ss_pred CCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEcc-CCCchHHHHHHHHh
Q psy3769 461 GRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEI-GGLDEIYAANWIKK 539 (974)
Q Consensus 461 G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~-~g~~~~~~~~f~~~ 539 (974)
|+|++|+.+|+++...++.+...|....-.+-+|..+ ..-.+.+.++.+.+||++++|++.+=+ ....+.-++.+.++
T Consensus 257 ~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~-~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~~ 335 (388)
T PRK00696 257 GNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-TAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAA 335 (388)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999999988666666655543 345577899999999999999976432 11111222333333
Q ss_pred --c--CCCCEEEEecc
Q psy3769 540 --N--MKKPVIGFIAG 551 (974)
Q Consensus 540 --~--~~KPVv~lk~G 551 (974)
. .+|||++.-.|
T Consensus 336 ~~~~~~~kPvv~~~~g 351 (388)
T PRK00696 336 VKEVGVTVPLVVRLEG 351 (388)
T ss_pred HHhcCCCCcEEEEeCC
Confidence 3 57999776555
No 191
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=89.88 E-value=1.2 Score=52.01 Aligned_cols=91 Identities=19% Similarity=0.305 Sum_probs=67.2
Q ss_pred CCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCc--hHHHHHHH
Q psy3769 460 KGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLD--EIYAANWI 537 (974)
Q Consensus 460 ~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~--~~~~~~f~ 537 (974)
.|+|++++.+|+++...++.+...|....-.+-+|..+ ..-.+.+.++-+.+||++++|++++-+ |.. +.-++...
T Consensus 256 ~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a-~~~~~~~al~~l~~dp~vd~ilv~i~g-g~~~~~~va~~i~ 333 (386)
T TIGR01016 256 DGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-SAERVREALKLVLSDKSVKVVFINIFG-GITRCDLVAKGLV 333 (386)
T ss_pred CCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEECCC-CCCCHHHHHHHHH
Confidence 49999999999999999999999888877777776654 355678899999999999999986552 221 12223333
Q ss_pred Hh--cC--CCCEEEEeccc
Q psy3769 538 KK--NM--KKPVIGFIAGI 552 (974)
Q Consensus 538 ~~--~~--~KPVv~lk~Gr 552 (974)
++ .. +|||++.-.|.
T Consensus 334 ~a~~~~~~~kPvvv~~~g~ 352 (386)
T TIGR01016 334 EALKEVGVNVPVVVRLEGT 352 (386)
T ss_pred HHHHhcCCCCcEEEEeCCc
Confidence 33 22 39997766663
No 192
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.84 E-value=0.77 Score=51.54 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=68.0
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCcc-----ccccccccchhhhcccC-CCcEEEEEecch-hHHHHHH
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK-----FEEIPIFDTVKNAKNET-GATVSVIYVPAI-FATSAIW 396 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~-----i~G~~~y~sl~dip~~~-~vDlavi~vp~~-~v~~~v~ 396 (974)
+| .+..|..+.++|.+.|++ |+..|+.. +. -.|...+.|.+|+.+.. .+|++++++|.. .+.++++
T Consensus 6 IG-lG~MG~~mA~~L~~~g~~----v~v~dr~~--~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~ 78 (301)
T PRK09599 6 IG-LGRMGGNMARRLLRGGHE----VVGYDRNP--EAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID 78 (301)
T ss_pred Ec-ccHHHHHHHHHHHHCCCe----EEEEECCH--HHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH
Confidence 45 456788889999988887 55566653 21 14778888998886521 379999999987 6777777
Q ss_pred HHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 397 EAIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 397 e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
.+... .-+.+++-.+........++.+.++ ++|++.+
T Consensus 79 ~l~~~l~~g~ivid~st~~~~~~~~~~~~~~--~~g~~~~ 116 (301)
T PRK09599 79 ELAPLLSPGDIVIDGGNSYYKDDIRRAELLA--EKGIHFV 116 (301)
T ss_pred HHHhhCCCCCEEEeCCCCChhHHHHHHHHHH--HcCCEEE
Confidence 66543 2233333333333344556677788 8888877
No 193
>PRK05246 glutathione synthetase; Provisional
Probab=89.72 E-value=1.4 Score=49.87 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=51.6
Q ss_pred CCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeC-CHHHHHHHHHHHHhccccccccCCCCCceeEE
Q psy3769 18 TIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQ-SLEQVEKYTKKILGMQLITSQTNQEGENVFCV 96 (974)
Q Consensus 18 pvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~-s~ee~~~a~~~~l~~~~~t~q~~~~g~~~~~v 96 (974)
++|++.+.++.+++.+..++.| |+|+||..-++|+ ||..++ +..++....+ .+... .-..+
T Consensus 134 ~vP~T~~~~~~~~~~~~~~~~~--~vVlKP~~G~~G~----gV~~i~~~~~~~~~~~~-~l~~~-----------~~~~~ 195 (316)
T PRK05246 134 LMPPTLVTRDKAEIRAFRAEHG--DIILKPLDGMGGA----GIFRVKADDPNLGSILE-TLTEH-----------GREPV 195 (316)
T ss_pred cCCCEEEeCCHHHHHHHHHHCC--CEEEEECCCCCcc----ceEEEeCCCccHHHHHH-HHHHc-----------cCCeE
Confidence 7999999999999999998886 8999996655555 888863 3333333222 22211 01368
Q ss_pred EEEEEecc--ceeEEEEEE
Q psy3769 97 LIEEYIDI--KKELYISFM 113 (974)
Q Consensus 97 LVee~v~~--~~E~ylgi~ 113 (974)
++||+++. +.++.+-+.
T Consensus 196 lvQ~~I~~~~~~D~Rv~vv 214 (316)
T PRK05246 196 MAQRYLPEIKEGDKRILLV 214 (316)
T ss_pred EEEeccccCCCCCEEEEEE
Confidence 99999964 345544443
No 194
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=89.51 E-value=14 Score=39.01 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q psy3769 644 YIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 644 ~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
.++++|++||+|.++|+++..
T Consensus 74 ~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 74 VLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999999863
No 195
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=89.38 E-value=0.57 Score=53.13 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=69.9
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCc---cccccccccchhhhcccCCCcEEEEEecchhHHHHH-HHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQ---KFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAI-WEA 398 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~---~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v-~e~ 398 (974)
|+| .+..|..+.++|++.|++ ++....+..... +-.|..+. |++++.+ ..|++++++|+....+++ ++.
T Consensus 22 IIG-~GsmG~AlA~~L~~sG~~---Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~--~ADVVvLaVPd~~~~~V~~~~I 94 (330)
T PRK05479 22 IIG-YGSQGHAHALNLRDSGVD---VVVGLREGSKSWKKAEADGFEVL-TVAEAAK--WADVIMILLPDEVQAEVYEEEI 94 (330)
T ss_pred EEe-eHHHHHHHHHHHHHCCCE---EEEEECCchhhHHHHHHCCCeeC-CHHHHHh--cCCEEEEcCCHHHHHHHHHHHH
Confidence 345 346888899999999987 444333321001 12476655 8888876 789999999999888888 444
Q ss_pred HHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcccc
Q psy3769 399 IES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLI 443 (974)
Q Consensus 399 ~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~ 443 (974)
... .-..+++++.||+-.... ..... ..++-.+.||++|-.
T Consensus 95 ~~~Lk~g~iL~~a~G~~i~~~~--~~p~~--~~~Vi~vaPn~Pg~~ 136 (330)
T PRK05479 95 EPNLKEGAALAFAHGFNIHFGQ--IVPPA--DVDVIMVAPKGPGHL 136 (330)
T ss_pred HhcCCCCCEEEECCCCChhhce--eccCC--CCcEEEeCCCCCchh
Confidence 432 234577999999855322 01111 234555679998853
No 196
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.90 E-value=1 Score=50.57 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=65.8
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----cccccccchhhhccc-CCCcEEEEEecchhHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIPIFDTVKNAKNE-TGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~~y~sl~dip~~-~~vDlavi~vp~~~v~~~v~ 396 (974)
++| .+.+|..+.+++.+.|++ |...|++. +.. .|...+.|++++.+. ...|++++++|+..+.++++
T Consensus 5 ~IG-lG~mG~~la~~L~~~g~~----V~~~dr~~--~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~ 77 (298)
T TIGR00872 5 LIG-LGRMGANIVRRLAKRGHD----CVGYDHDQ--DAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLE 77 (298)
T ss_pred EEc-chHHHHHHHHHHHHCCCE----EEEEECCH--HHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHH
Confidence 455 356788888899988887 44455553 221 256667787776431 25799999999998888888
Q ss_pred HHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEc
Q psy3769 397 EAIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLG 436 (974)
Q Consensus 397 e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viG 436 (974)
+.... .-..+++-.+.....+..++.+.++ ++|++.+.
T Consensus 78 ~l~~~l~~g~ivid~st~~~~~t~~~~~~~~--~~g~~~vd 116 (298)
T TIGR00872 78 ELAPTLEKGDIVIDGGNSYYKDSLRRYKLLK--EKGIHLLD 116 (298)
T ss_pred HHHhhCCCCCEEEECCCCCcccHHHHHHHHH--hcCCeEEe
Confidence 77653 1223333333332234444556666 77877554
No 197
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=88.89 E-value=1.1 Score=49.79 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=69.5
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCccc-----cccccccchhhhcccCCCcEEEEEecc-hhHHHHH---HHH
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIPIFDTVKNAKNETGATVSVIYVPA-IFATSAI---WEA 398 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~~y~sl~dip~~~~vDlavi~vp~-~~v~~~v---~e~ 398 (974)
+.+|..+.+++.+.|++ |+..|+.. +.. .|.....|.+++.+ ..|++++++|+ ..+.+++ +..
T Consensus 5 G~mG~~mA~~L~~~G~~----V~v~dr~~--~~~~~l~~~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v~~g~~~l 76 (288)
T TIGR01692 5 GNMGGPMAANLLKAGHP----VRVFDLFP--DAVEEAVAAGAQAAASPAEAAE--GADRVITMLPAGQHVISVYSGDEGI 76 (288)
T ss_pred cHhHHHHHHHHHhCCCe----EEEEeCCH--HHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCcchH
Confidence 45777788899988886 55566653 222 36667788888876 78999999998 5566666 344
Q ss_pred HHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEc
Q psy3769 399 IES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLG 436 (974)
Q Consensus 399 ~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viG 436 (974)
.+. .-+.+++-.++...+..+++.+.++ ++|++++.
T Consensus 77 ~~~~~~g~~vid~st~~p~~~~~~~~~~~--~~g~~~vd 113 (288)
T TIGR01692 77 LPKVAKGSLLIDCSTIDPDSARKLAELAA--AHGAVFMD 113 (288)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHH--HcCCcEEE
Confidence 432 2334566667777666777888888 88988775
No 198
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=88.58 E-value=0.82 Score=51.67 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=69.0
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCC-cc--ccccccccchhhhcccCCCcEEEEEecch-hHHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG-QK--FEEIPIFDTVKNAKNETGATVSVIYVPAI-FATSAIWEA 398 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g-~~--i~G~~~y~sl~dip~~~~vDlavi~vp~~-~v~~~v~e~ 398 (974)
++| .++.|..+.++|++.|++ .++..++.... +. -.|+.+. +..++.+ ..|++++++|++ ....+.++.
T Consensus 8 iIG-~G~mG~AiA~~L~~sG~~---Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~--~ADiVvLaVpp~~~~~~v~~ei 80 (314)
T TIGR00465 8 IIG-YGSQGHAQALNLRDSGLN---VIVGLRKGGASWKKATEDGFKVG-TVEEAIP--QADLIMNLLPDEVQHEVYEAEI 80 (314)
T ss_pred EEe-EcHHHHHHHHHHHHCCCe---EEEEECcChhhHHHHHHCCCEEC-CHHHHHh--cCCEEEEeCCcHhHHHHHHHHH
Confidence 345 457888899999998886 45555554200 11 2366654 5777655 789999999998 555445545
Q ss_pred HHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccc
Q psy3769 399 IES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGL 442 (974)
Q Consensus 399 ~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~ 442 (974)
... .-+.++.++.||+-+..+ .... ....+-.+.||++|.
T Consensus 81 ~~~l~~g~iVs~aaG~~i~~~~---~~~~-~~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 81 QPLLKEGKTLGFSHGFNIHFVQ---IVPP-KDVDVVMVAPKGPGT 121 (314)
T ss_pred HhhCCCCcEEEEeCCccHhhcc---ccCC-CCCcEEEECCCCCcH
Confidence 432 223578999999865433 2222 023566678999885
No 199
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=88.54 E-value=4.9 Score=42.67 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy3769 644 YIKIIGGFLLFWISIKLLSN 663 (974)
Q Consensus 644 ~~~~~gg~~Ll~~~~~~~~~ 663 (974)
+-.++|+++|++++.+|+.+
T Consensus 62 ~~~~ig~~iLi~iG~~mi~~ 81 (206)
T TIGR02840 62 VTEILGAFILIAIGIWIIYN 81 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999965
No 200
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=87.89 E-value=1.5 Score=48.87 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=64.6
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----cccccccchhhhcccCCCcEEEEEecchh-HHHHH-
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAI- 395 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v- 395 (974)
++| .+..|..+.+++.+.|++ |+..|++. +.. .|.....+.+++.+ ..|++++++|... +..++
T Consensus 7 viG-~G~mG~~~a~~l~~~g~~----v~~~d~~~--~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp~~~~~~~v~~ 77 (296)
T PRK11559 7 FIG-LGIMGKPMSKNLLKAGYS----LVVYDRNP--EAVAEVIAAGAETASTAKAVAE--QCDVIITMLPNSPHVKEVAL 77 (296)
T ss_pred EEc-cCHHHHHHHHHHHHCCCe----EEEEcCCH--HHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHc
Confidence 456 456788888899888876 55566653 221 36667788888876 7999999999644 44444
Q ss_pred --HHHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 396 --WEAIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 396 --~e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
++.... .-..+++-.+.......+++.+.++ ++|++++
T Consensus 78 ~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~--~~g~~~~ 118 (296)
T PRK11559 78 GENGIIEGAKPGTVVIDMSSIAPLASREIAAALK--AKGIEML 118 (296)
T ss_pred CcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHH--HcCCcEE
Confidence 223332 2234455445555555566777777 6666654
No 201
>PRK07680 late competence protein ComER; Validated
Probab=86.99 E-value=1.5 Score=48.51 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=67.5
Q ss_pred ccccccCcccccchhhhhccCCCCceEEEEecCCCCCcc-------ccccccccchhhhcccCCCcEEEEEecchhHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK-------FEEIPIFDTVKNAKNETGATVSVIYVPAIFATSA 394 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~-------i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~ 394 (974)
.|+| .|..|..+.+.+.+.|+-.+..|+..+++. +. ..|.+.+.+..++.. ..|++++++|+..+.++
T Consensus 4 ~iIG-~G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~~~~g~~~~~~~~~~~~--~aDiVilav~p~~~~~v 78 (273)
T PRK07680 4 GFIG-TGNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKERYPGIHVAKTIEEVIS--QSDLIFICVKPLDIYPL 78 (273)
T ss_pred EEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHHHcCCeEEECCHHHHHH--hCCEEEEecCHHHHHHH
Confidence 4567 567888888888887741111466666653 21 126777778887755 78999999999999999
Q ss_pred HHHHHHc--CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccC
Q psy3769 395 IWEAIES--ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPN 438 (974)
Q Consensus 395 v~e~~~~--gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPn 438 (974)
++++... .-+.++-+++|..- ++|.+... .+.+|++ ||
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~~---~~L~~~~~--~~~~r~~-p~ 118 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPISV---EQLETLVP--CQVARII-PS 118 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCCH---HHHHHHcC--CCEEEEC-CC
Confidence 9887542 12345666677753 23333333 3445555 54
No 202
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=86.96 E-value=1.7 Score=48.44 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=66.3
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----cccccccchhhhcccCCCcEEEEEecchh-HHHHH-
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAI- 395 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v- 395 (974)
++| .+..|..+.+++.+.|++ |+.+|++. +.. .|.....|..++.+ ..|++++++|... +.+++
T Consensus 4 vIG-~G~mG~~iA~~l~~~G~~----V~~~dr~~--~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~v~~ 74 (291)
T TIGR01505 4 FIG-LGIMGSPMSINLAKAGYQ----LHVTTIGP--EVADELLAAGAVTAETARQVTE--QADVIFTMVPDSPQVEEVAF 74 (291)
T ss_pred EEE-ecHHHHHHHHHHHHCCCe----EEEEcCCH--HHHHHHHHCCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHc
Confidence 455 357888888899988987 55666653 221 35556678877765 7899999999753 34443
Q ss_pred --HHHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEcc
Q psy3769 396 --WEAIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGP 437 (974)
Q Consensus 396 --~e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGP 437 (974)
+.+.+. .-..+++-.+.......+++.+.++ +.|++++.+
T Consensus 75 ~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~--~~g~~~~~~ 117 (291)
T TIGR01505 75 GENGIIEGAKPGKTLVDMSSISPIESKRFAKAVK--EKGIDYLDA 117 (291)
T ss_pred CcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHH--HcCCCEEec
Confidence 223332 2223444445555455567788888 778887763
No 203
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=86.63 E-value=1.5 Score=45.18 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=40.3
Q ss_pred CCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCC-HHHHHHHHHHHHhccccccccCCCCCceeEEE
Q psy3769 19 IPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQS-LEQVEKYTKKILGMQLITSQTNQEGENVFCVL 97 (974)
Q Consensus 19 vp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s-~ee~~~a~~~~l~~~~~t~q~~~~g~~~~~vL 97 (974)
+|++.+.++.+++.++.++.+ . +|+||-.-.||+ ||..++. .....+..+.+.... -+.++
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~-~-~VlKPl~g~gG~----gV~~i~~~~~n~~~i~e~~~~~~------------~~~~m 73 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHG-D-IVLKPLDGMGGR----GVFRISRDDPNLNSILETLTKNG------------ERPVM 73 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHS-S-EEEEESS--TTT----T-EEE-TT-TTHHHHHHHHTTTT------------TS-EE
T ss_pred CcCEEEECCHHHHHHHHHHCC-C-EEEEECCCCCCc----CEEEEcCCCCCHHHHHHHHHhcC------------CccEE
Confidence 589999999999999999988 4 999997777777 7777544 333444333332211 15789
Q ss_pred EEEEecc
Q psy3769 98 IEEYIDI 104 (974)
Q Consensus 98 Vee~v~~ 104 (974)
+|+|++.
T Consensus 74 vQ~flp~ 80 (173)
T PF02955_consen 74 VQPFLPE 80 (173)
T ss_dssp EEE--GG
T ss_pred EEecccc
Confidence 9999973
No 204
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=86.54 E-value=1.2 Score=49.75 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=69.7
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc--cccccccchhhhcccCCCcEEEEEecch-hHHHHHHH--
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF--EEIPIFDTVKNAKNETGATVSVIYVPAI-FATSAIWE-- 397 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i--~G~~~y~sl~dip~~~~vDlavi~vp~~-~v~~~v~e-- 397 (974)
++| .+..|..+.+++++.||+- .+|-.+|+. +.. .|.....|..|+.+ ..|++++++|.+ .+.+++..
T Consensus 5 ~IG-lG~MG~~ma~~L~~~G~~v--~v~~~~~~~--~~~~~~g~~~~~s~~~~~~--~advVi~~v~~~~~v~~v~~~~~ 77 (292)
T PRK15059 5 FIG-LGIMGTPMAINLARAGHQL--HVTTIGPVA--DELLSLGAVSVETARQVTE--ASDIIFIMVPDTPQVEEVLFGEN 77 (292)
T ss_pred EEc-cCHHHHHHHHHHHHCCCeE--EEEeCCHhH--HHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCc
Confidence 345 4567888889999999873 345455543 322 47777888888876 789999999976 44555422
Q ss_pred -HHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEc
Q psy3769 398 -AIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLG 436 (974)
Q Consensus 398 -~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viG 436 (974)
+... .-..+++-.+.......+++.+.++ ++|++++.
T Consensus 78 g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~--~~G~~~vd 116 (292)
T PRK15059 78 GCTKASLKGKTIVDMSSISPIETKRFARQVN--ELGGDYLD 116 (292)
T ss_pred chhccCCCCCEEEECCCCCHHHHHHHHHHHH--HcCCCEEE
Confidence 1221 1234566666666666777888888 88887664
No 205
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=85.92 E-value=1.7 Score=50.71 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCc-hHHHHHHHHh
Q psy3769 461 GRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLD-EIYAANWIKK 539 (974)
Q Consensus 461 G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~-~~~~~~f~~~ 539 (974)
|+|++++-.++++.+.++.+...|-...-++-+|..+ ..-.+.+.++.+.+||++++|++.+-+.-.. ..-++.+.++
T Consensus 257 G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a-~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~a 335 (392)
T PRK14046 257 GDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGA-SPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQA 335 (392)
T ss_pred CcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999999988777777776654 3566788999999999999999765421111 1223333333
Q ss_pred --c--CCCCEEEEeccc
Q psy3769 540 --N--MKKPVIGFIAGI 552 (974)
Q Consensus 540 --~--~~KPVv~lk~Gr 552 (974)
. .+|||++.-.|.
T Consensus 336 ~~~~~~~kPvvv~l~G~ 352 (392)
T PRK14046 336 AREVGIDVPLVVRLAGT 352 (392)
T ss_pred HHhcCCCCcEEEEcCCC
Confidence 2 579997765553
No 206
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.82 E-value=2.2 Score=46.10 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=68.0
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCC-CC-Ccc---ccccccccchhhhcccCCCcEEEEEecchhHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPK-KN-GQK---FEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWE 397 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~-~~-g~~---i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e 397 (974)
++| .|.+|..+.+.+.+.|......++.+++. .. .+. -.|.+.+.+.+++.+ ..|++++++|+....+++++
T Consensus 9 iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DiViiavp~~~~~~v~~~ 85 (245)
T PRK07634 9 FIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVT--SVDTIVLAMPPSAHEELLAE 85 (245)
T ss_pred EEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHh--cCCEEEEecCHHHHHHHHHH
Confidence 456 46677777777776653221136666643 10 111 136777888888765 79999999999999999988
Q ss_pred HHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCC
Q psy3769 398 AIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNC 439 (974)
Q Consensus 398 ~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc 439 (974)
+... .=+.+|.++.|+..+..+ +... ....+-..+||.
T Consensus 86 l~~~~~~~~vis~~~gi~~~~l~---~~~~-~~~~v~r~~Pn~ 124 (245)
T PRK07634 86 LSPLLSNQLVVTVAAGIGPSYLE---ERLP-KGTPVAWIMPNT 124 (245)
T ss_pred HHhhccCCEEEEECCCCCHHHHH---HHcC-CCCeEEEECCcH
Confidence 7642 225667777888755432 3322 012344567864
No 207
>PRK10229 threonine efflux system; Provisional
Probab=85.48 E-value=25 Score=36.98 Aligned_cols=21 Identities=29% Similarity=0.691 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q psy3769 644 YIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 644 ~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
.++++|++||+|.|+++++..
T Consensus 73 ~l~~~Ga~yLlylg~~~~~~~ 93 (206)
T PRK10229 73 IIMVGGGLYLCWMGYQMLRGA 93 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 588999999999999999854
No 208
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=84.02 E-value=1.7 Score=39.43 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=25.9
Q ss_pred eCCEEEEEecCCCCHHHHHhhcCCEEEEe
Q psy3769 898 HGNYVLANLYGITDRNLATKLQGYYLKIS 926 (974)
Q Consensus 898 ~~~~~lvkf~gi~~re~Ae~L~g~~l~v~ 926 (974)
|.+..|+|++|+||+++|..+.|..++..
T Consensus 24 ~P~~~liKi~gv~s~~eA~~y~gk~v~yk 52 (100)
T COG2451 24 HPNVSLIKIEGVDSPEEAQFYLGKRVCYK 52 (100)
T ss_pred CCceEEEEEecCCCHHHHHhhhccEEEEE
Confidence 56788999999999999999999988764
No 209
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=83.93 E-value=1.1 Score=45.41 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=68.9
Q ss_pred cccccchhhhhccCCCCceEEEEecCCCCC---ccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHH--cCC
Q psy3769 329 KTGRFHTNLCLNYGNGKKAFVAGVNPKKNG---QKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIE--SEL 403 (974)
Q Consensus 329 k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g---~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~--~gv 403 (974)
+.|+....||++.|++ +++...+.... .+-.|..++ +++|+.. .-|++++.+|.+.-+++.++-++ ...
T Consensus 14 sQG~a~AlNLrDSG~~---V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~--~aDvV~~L~PD~~q~~vy~~~I~p~l~~ 87 (165)
T PF07991_consen 14 SQGHAHALNLRDSGVN---VIVGLREGSASWEKAKADGFEVM-SVAEAVK--KADVVMLLLPDEVQPEVYEEEIAPNLKP 87 (165)
T ss_dssp HHHHHHHHHHHHCC-E---EEEEE-TTCHHHHHHHHTT-ECC-EHHHHHH--C-SEEEE-S-HHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHhCCCC---EEEEecCCCcCHHHHHHCCCeec-cHHHHHh--hCCEEEEeCChHHHHHHHHHHHHhhCCC
Confidence 5688889999999998 77888776400 134688887 6777766 79999999999999998866665 345
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccc
Q psy3769 404 ELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIV 444 (974)
Q Consensus 404 ~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~ 444 (974)
..+++++.||.-.-.. ..--. .-++-++-|.++|-..
T Consensus 88 G~~L~fahGfni~~~~--i~pp~--~vdV~mvAPKgpG~~v 124 (165)
T PF07991_consen 88 GATLVFAHGFNIHYGL--IKPPK--DVDVIMVAPKGPGHLV 124 (165)
T ss_dssp T-EEEESSSHHHHCTT--S---T--TSEEEEEEESSSCHHH
T ss_pred CCEEEeCCcchhhcCc--ccCCC--CCeEEEEecCCCChHH
Confidence 6789999998743211 11112 4456778888888554
No 210
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=83.66 E-value=3.2 Score=45.51 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=62.4
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc-
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES- 401 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~- 401 (974)
|+| .|..|..+.+.+.+.+.-.+..++..+|+. +. .+.....+..++.. ..|++++++|+..+.+++++....
T Consensus 8 iIG-~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~--~~D~Vilavkp~~~~~vl~~i~~~l 81 (260)
T PTZ00431 8 FIG-LGKMGSALAYGIENSNIIGKENIYYHTPSK--KN-TPFVYLQSNEELAK--TCDIIVLAVKPDLAGKVLLEIKPYL 81 (260)
T ss_pred EEC-ccHHHHHHHHHHHhCCCCCcceEEEECCCh--hc-CCeEEeCChHHHHH--hCCEEEEEeCHHHHHHHHHHHHhhc
Confidence 456 456788888888877631111588888875 33 34444456566654 689999999999999999998742
Q ss_pred CCcEEEEEcCCCChHHHH
Q psy3769 402 ELELVICITEGIPVRDML 419 (974)
Q Consensus 402 gv~~~vi~s~G~~e~~~~ 419 (974)
.-+.+|.+..|+..+..+
T Consensus 82 ~~~~iIS~~aGi~~~~l~ 99 (260)
T PTZ00431 82 GSKLLISICGGLNLKTLE 99 (260)
T ss_pred cCCEEEEEeCCccHHHHH
Confidence 335677888898854433
No 211
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=83.38 E-value=2.6 Score=47.15 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=65.9
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----cccccccchhhhcccCCCcEEEEEecchh-HHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~ 396 (974)
++| .+.+|..+.+++.+.|++ |+.+|++. +.. .|.....|..++.+ ..|++++++|... +..++.
T Consensus 6 ~IG-lG~mG~~mA~~l~~~G~~----V~v~d~~~--~~~~~~~~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 6 FIG-LGQMGSPMASNLLKQGHQ----LQVFDVNP--QAVDALVDKGATPAASPAQAAA--GAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred EEe-eCHHHHHHHHHHHHCCCe----EEEEcCCH--HHHHHHHHcCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHc
Confidence 455 456788888899988886 66667664 222 36667788888876 7899999999975 555553
Q ss_pred H---HHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 397 E---AIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 397 e---~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
. +... .-..+++-.+-......+++.+.++ ++|++++
T Consensus 77 ~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~--~~g~~~l 117 (296)
T PRK15461 77 GENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQ--AKGFSMM 117 (296)
T ss_pred CcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHH--HcCCcEE
Confidence 2 2221 1223334334344445566777787 8888866
No 212
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=83.03 E-value=3.2 Score=49.81 Aligned_cols=109 Identities=16% Similarity=-0.004 Sum_probs=68.9
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCcccc---------ccc---cccchhhhccc-CCCcEEEEEecchh
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFE---------EIP---IFDTVKNAKNE-TGATVSVIYVPAIF 390 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~---------G~~---~y~sl~dip~~-~~vDlavi~vp~~~ 390 (974)
+| .+.+|..+.+||.+.||+ |+..|... +... |.. .+.|++|+.+. ..+|++++++|...
T Consensus 12 IG-LG~MG~~mA~nL~~~G~~----V~V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~ 84 (493)
T PLN02350 12 AG-LAVMGQNLALNIAEKGFP----ISVYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA 84 (493)
T ss_pred Ee-eHHHHHHHHHHHHhCCCe----EEEECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence 45 346788899999999997 55557654 2111 432 67899998752 13999999999876
Q ss_pred H-HHHHHHHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcc
Q psy3769 391 A-TSAIWEAIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPG 441 (974)
Q Consensus 391 v-~~~v~e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G 441 (974)
. .++++..... ....++|=.+-..-++.+++.+.++ ++|++.++---.|
T Consensus 85 aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~--~~Gi~fldapVSG 135 (493)
T PLN02350 85 PVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA--EKGLLYLGMGVSG 135 (493)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH--HcCCeEEeCCCcC
Confidence 5 4454554443 2233333333333345566677788 8899998744433
No 213
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=82.74 E-value=2.5 Score=48.44 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=54.8
Q ss_pred cccccCcccccchhhhhccC-CCCceEEEEecCCCCCcccc---c-cc-----cccchhhhcccCCCcEEEEEecchhHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYG-NGKKAFVAGVNPKKNGQKFE---E-IP-----IFDTVKNAKNETGATVSVIYVPAIFAT 392 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g-~~g~~~V~pVnP~~~g~~i~---G-~~-----~y~sl~dip~~~~vDlavi~vp~~~v~ 392 (974)
|+|.++..|..+++.+.++. ++ .+.-+.++..++.+. + ++ .|.++++.. ..++|++++++|.....
T Consensus 7 IiGAtG~vG~~l~~~L~~~p~~e---lv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~-~~~vD~Vf~alP~~~~~ 82 (343)
T PRK00436 7 IVGASGYTGGELLRLLLNHPEVE---IVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEI-LAGADVVFLALPHGVSM 82 (343)
T ss_pred EECCCCHHHHHHHHHHHcCCCce---EEEEECccccCcchHHhCcccccccCceeecCCHHH-hcCCCEEEECCCcHHHH
Confidence 46777777777777776552 33 334444322122211 0 11 344444321 23699999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCh
Q psy3769 393 SAIWEAIESELELVICITEGIPV 415 (974)
Q Consensus 393 ~~v~e~~~~gv~~~vi~s~G~~e 415 (974)
+.+.+|.++|+. +|=.|+.|.-
T Consensus 83 ~~v~~a~~aG~~-VID~S~~fR~ 104 (343)
T PRK00436 83 DLAPQLLEAGVK-VIDLSADFRL 104 (343)
T ss_pred HHHHHHHhCCCE-EEECCcccCC
Confidence 999999998854 5677776654
No 214
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=82.59 E-value=3.2 Score=47.71 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=70.6
Q ss_pred ccccccCcccccchhhhh-ccCCCCceEEEEecCC-CCCccc--cccccccchhhhcc---cCCCcEEEEEecchhHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCL-NYGNGKKAFVAGVNPK-KNGQKF--EEIPIFDTVKNAKN---ETGATVSVIYVPAIFATSA 394 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~-~~g~~g~~~V~pVnP~-~~g~~i--~G~~~y~sl~dip~---~~~vDlavi~vp~~~v~~~ 394 (974)
.++|.|+-.|..+++.|. +..|.-. .+++.... .+|+.+ .|.+ + .+.++.+ -..+|+++.+.+.+...+.
T Consensus 4 avvGATG~VG~~ll~~L~~e~~fp~~-~~~~~ss~~s~g~~~~f~~~~-~-~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 4 GLVGWRGMVGSVLMQRMQEERDFDAI-RPVFFSTSQLGQAAPSFGGTT-G-TLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred EEEcCcCHHHHHHHHHHHhCCCCccc-cEEEEEchhhCCCcCCCCCCc-c-eEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 457999999999998888 6677621 56666553 222222 1222 1 2333311 1278999999999999999
Q ss_pred HHHHHHcCCcEEEEEcCC-CChH----------HHHHHHHHHhcCCCCce-EEccCCcccc
Q psy3769 395 IWEAIESELELVICITEG-IPVR----------DMLILKNKMKKNNSKTL-LLGPNCPGLI 443 (974)
Q Consensus 395 v~e~~~~gv~~~vi~s~G-~~e~----------~~~~l~~~a~~~~~gi~-viGPnc~G~~ 443 (974)
...+.++|..++||=.++ |.-+ -.+.+.. .+ ++|+. +..|||.-+.
T Consensus 81 ~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~-~~--~~gi~~ianPNCst~~ 138 (366)
T TIGR01745 81 YPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITD-GL--NNGIRTFVGGNCTVSL 138 (366)
T ss_pred HHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHh-HH--hCCcCeEECcCHHHHH
Confidence 999999997754443332 3211 1122222 23 46775 8899997543
No 215
>PRK14013 hypothetical protein; Provisional
Probab=82.47 E-value=5.9 Score=44.61 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHH-----------------------
Q psy3769 677 IHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVL----------------------- 733 (974)
Q Consensus 677 ~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~----------------------- 733 (974)
...+.+..+..++.|+||.+-.+.+.+..|+.-+-.-...|+.+++.+||...-+..
T Consensus 29 ~~~~~~L~vLEisLsfDNaIvnA~vl~~m~~~wq~~fl~~Gi~iAvFgmRlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y 108 (338)
T PRK14013 29 LFIVAILAVLEISLSFDNAVVNATVLKRMSPKWQKRFLTWGILIAVFGMRLVFPLLIVAVAAGLGPIEALKLALNDPDEY 108 (338)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHcCCchhH
Confidence 334566667899999999999999988777666667788999999999998876654
Q ss_pred --HHHHhhhhHHHHHHHHHHHHHHHhhhccc
Q psy3769 734 --ILIEKFSSIIILCSILLGYLSGNMIFSDQ 762 (974)
Q Consensus 734 --~~~~~~~~l~~~~~~~l~~ig~~l~~~~~ 762 (974)
.+.+.+|.+-..+..+|.+++.+-++++.
T Consensus 109 ~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~e 139 (338)
T PRK14013 109 AEILTDAHPQIAAFGGTFLLMVFLNFFFDEE 139 (338)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhcCcC
Confidence 24556778889999999999999999443
No 216
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=82.34 E-value=3.3 Score=45.93 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=72.5
Q ss_pred cccccchhhhhccCCCCceEEEEecCCCCC---ccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc--CC
Q psy3769 329 KTGRFHTNLCLNYGNGKKAFVAGVNPKKNG---QKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES--EL 403 (974)
Q Consensus 329 k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g---~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~--gv 403 (974)
+.|+....||++.|.+ +++++.+.... .+-.|..+| +++|+.. ..|++.+.+|.+.-+++.++-++- .-
T Consensus 28 sQG~ahalNLRDSGln---ViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k--~ADvim~L~PDe~q~~vy~~~I~p~Lk~ 101 (338)
T COG0059 28 SQGHAQALNLRDSGLN---VIIGLRKGSSSWKKAKEDGFKVY-TVEEAAK--RADVVMILLPDEQQKEVYEKEIAPNLKE 101 (338)
T ss_pred hHHHHHHhhhhhcCCc---EEEEecCCchhHHHHHhcCCEee-cHHHHhh--cCCEEEEeCchhhHHHHHHHHhhhhhcC
Confidence 5678888899999999 78998776410 134688877 6788765 799999999999999999877763 23
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcc
Q psy3769 404 ELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPG 441 (974)
Q Consensus 404 ~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G 441 (974)
+.++.++-||.-.-.. ..--+ .-++-++-|.|+|
T Consensus 102 G~aL~FaHGfNihf~~--i~ppk--dvdV~MVAPKgPG 135 (338)
T COG0059 102 GAALGFAHGFNIHFGL--IVPPK--DVDVIMVAPKGPG 135 (338)
T ss_pred CceEEeccccceecce--ecCCc--cCcEEEEcCCCCc
Confidence 3578888888644311 11112 3355667777776
No 217
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=82.12 E-value=3.6 Score=49.12 Aligned_cols=109 Identities=18% Similarity=0.125 Sum_probs=67.7
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----c-----ccccccchhhhccc-CCCcEEEEEecc-hh
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----E-----EIPIFDTVKNAKNE-TGATVSVIYVPA-IF 390 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~-----G~~~y~sl~dip~~-~~vDlavi~vp~-~~ 390 (974)
++| .+.+|..+.++|.+.||+ |+..|++. +.. . +...+.|++|+.+. ..+|++++++|+ +.
T Consensus 4 ~IG-LG~MG~~mA~nL~~~G~~----V~v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 4 VIG-LAVMGSNLALNMADHGFT----VSVYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred EEe-eHHHHHHHHHHHHhcCCe----EEEEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 345 356788899999999987 55556543 211 1 25677888887632 258999999999 66
Q ss_pred HHHHHHHHHHc-CCcEEEEEcCC-CChHHHHHHHHHHhcCCCCceEEccCCcc
Q psy3769 391 ATSAIWEAIES-ELELVICITEG-IPVRDMLILKNKMKKNNSKTLLLGPNCPG 441 (974)
Q Consensus 391 v~~~v~e~~~~-gv~~~vi~s~G-~~e~~~~~l~~~a~~~~~gi~viGPnc~G 441 (974)
+.+++++.... .-.. +++..| ....+..+..+.++ ++|++.++---.|
T Consensus 77 v~~Vi~~l~~~L~~g~-iIID~gns~~~~t~~~~~~l~--~~gi~fvdapVsG 126 (467)
T TIGR00873 77 VDAVINQLLPLLEKGD-IIIDGGNSHYPDTERRYKELK--AKGILFVGSGVSG 126 (467)
T ss_pred HHHHHHHHHhhCCCCC-EEEECCCcCHHHHHHHHHHHH--hcCCEEEcCCCCC
Confidence 77777776543 2223 344433 22233334455566 7899988654444
No 218
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=81.71 E-value=2 Score=48.45 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=36.4
Q ss_pred ccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc-CC-cEEEEEcCCCChH
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES-EL-ELVICITEGIPVR 416 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~-gv-~~~vi~s~G~~e~ 416 (974)
+.....+.+++.+ ..|++++++|+..+.++++++... .- ..++.++.|+..+
T Consensus 58 ~~~~~~~~~~~~~--~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~ 111 (325)
T PRK00094 58 NLRATTDLAEALA--DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPG 111 (325)
T ss_pred CeEEeCCHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCC
Confidence 3455667777765 789999999999999998887653 22 2345566687643
No 219
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=81.37 E-value=1.7 Score=49.04 Aligned_cols=110 Identities=20% Similarity=0.274 Sum_probs=70.5
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCC--ccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHH-H
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG--QKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI-E 400 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g--~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~-~ 400 (974)
+| .+..|..+.++|++.|++ ++....|.... .+..|..++ |++|+.. ..|++++++|.+...+++.+-. .
T Consensus 22 IG-~GsIG~amA~nL~d~G~~---ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak--~ADVV~llLPd~~t~~V~~~eil~ 94 (335)
T PRK13403 22 IG-YGSQGHAQAQNLRDSGVE---VVVGVRPGKSFEVAKADGFEVM-SVSEAVR--TAQVVQMLLPDEQQAHVYKAEVEE 94 (335)
T ss_pred Ee-EcHHHHHHHHHHHHCcCE---EEEEECcchhhHHHHHcCCEEC-CHHHHHh--cCCEEEEeCCChHHHHHHHHHHHh
Confidence 45 257888999999999998 33332332100 113476654 8999876 8999999999877777775433 2
Q ss_pred -cCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccc
Q psy3769 401 -SELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIV 444 (974)
Q Consensus 401 -~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~ 444 (974)
..-..+++++-||.-.--. ..--+ .-++-++-|.++|-..
T Consensus 95 ~MK~GaiL~f~hgfni~~~~--i~pp~--~vdv~mvaPKgpG~~v 135 (335)
T PRK13403 95 NLREGQMLLFSHGFNIHFGQ--INPPS--YVDVAMVAPKSPGHLV 135 (335)
T ss_pred cCCCCCEEEECCCcceecCc--eeCCC--CCeEEEECCCCCChHH
Confidence 2445778999998753211 11112 4456677888888543
No 220
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=81.35 E-value=2 Score=39.13 Aligned_cols=69 Identities=20% Similarity=0.119 Sum_probs=48.8
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEe-cCCCCCcc------cccccccc-chhhhcccCCCcEEEEEecchhHHHHH
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGV-NPKKNGQK------FEEIPIFD-TVKNAKNETGATVSVIYVPAIFATSAI 395 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pV-nP~~~g~~------i~G~~~y~-sl~dip~~~~vDlavi~vp~~~v~~~v 395 (974)
+| .|+.|..+.+.+.+.|+ .+..|+-+ +++. +. -.+..++. +..|+-+ ..|++++++|+..+++++
T Consensus 5 IG-~G~mg~al~~~l~~~g~-~~~~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~--~advvilav~p~~~~~v~ 78 (96)
T PF03807_consen 5 IG-AGNMGSALARGLLASGI-KPHEVIIVSSRSP--EKAAELAKEYGVQATADDNEEAAQ--EADVVILAVKPQQLPEVL 78 (96)
T ss_dssp ES-TSHHHHHHHHHHHHTTS--GGEEEEEEESSH--HHHHHHHHHCTTEEESEEHHHHHH--HTSEEEE-S-GGGHHHHH
T ss_pred EC-CCHHHHHHHHHHHHCCC-CceeEEeeccCcH--HHHHHHHHhhccccccCChHHhhc--cCCEEEEEECHHHHHHHH
Confidence 44 46788888999998886 33467755 5553 22 23555566 7777766 789999999999999999
Q ss_pred HHH
Q psy3769 396 WEA 398 (974)
Q Consensus 396 ~e~ 398 (974)
++.
T Consensus 79 ~~i 81 (96)
T PF03807_consen 79 SEI 81 (96)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
No 221
>COG1279 Lysine efflux permease [General function prediction only]
Probab=81.10 E-value=33 Score=36.11 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=72.5
Q ss_pred hcChhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHH----HHH-HHHH----HHHHHHHHHHHHHHHhhcc
Q psy3769 593 LLGSTDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSI----NLL-NLKY----IKIIGGFLLFWISIKLLSN 663 (974)
Q Consensus 593 ~Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~----~ll-~~~~----~~~~gg~~Ll~~~~~~~~~ 663 (974)
-++..|++++---.+ |+.++.... -..+.-++++..++ .|+ +.|+ +.+.|.+||+|.+++-++.
T Consensus 18 pIGaQNaFVl~QGi~------r~~~l~~~~-~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~yg~~a~~~ 90 (202)
T COG1279 18 PIGAQNAFVLNQGIR------REYVLPIAL-LCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLYYGLLALKS 90 (202)
T ss_pred hccchhHHHHHHHHh------hccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677665422211 233333333 23334444444433 333 4554 6688999999999998875
Q ss_pred c-C-Ccc-cc--cCCCcHHHHHHHHHHHHHhhh-------hchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHH-H
Q psy3769 664 D-H-NYT-TI--ASGKNLIHAIKTIIFADLIMS-------IDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGS-K 730 (974)
Q Consensus 664 ~-~-~~~-~~--~~~~~~~~~v~~I~~~D~~fs-------~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~-~ 730 (974)
. + ++. +. ....++|.++.+= ++++ +|-|.-+=+++.+.++..+. .++...++.-.+.|++ .
T Consensus 91 a~~~~~~~~~~~~~~~~~~~~l~~a----lavT~LNPhvyLDtvvliGs~~~~~~~~~k~--~F~~Ga~~aS~~WF~~L~ 164 (202)
T COG1279 91 APRGPSQLQVAEFTKLKLKKVLLFA----LAVTLLNPHVYLDTVVLIGSLAAQLSDEAKW--FFALGAISASFLWFFLLA 164 (202)
T ss_pred hccchhhccccccccccHHHHHHHH----HHHHHhCchhhhhhHhhhhhhhhhcCcchhh--HHHHHHHHHHHHHHHHHH
Confidence 3 1 111 11 1112333333221 1222 23333333333222222222 2333333332222222 2
Q ss_pred HHHHHHHh-------hhhHHHHHHHHHHHHHHHhhhc
Q psy3769 731 LVLILIEK-------FSSIIILCSILLGYLSGNMIFS 760 (974)
Q Consensus 731 ~~~~~~~~-------~~~l~~~~~~~l~~ig~~l~~~ 760 (974)
+..+.+++ .+.+....+.++..+|++|...
T Consensus 165 ~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~ 201 (202)
T COG1279 165 LGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201 (202)
T ss_pred HHHHHHchhccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444443 3566777888888899988764
No 222
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.53 E-value=4 Score=45.25 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=70.5
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCcc----ccccccccchhhhcccCCCcEEEEEecchhHHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK----FEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEA 398 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~----i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~ 398 (974)
++| .|..|..+.+.+++.|+..+..|+..|++...-+ -.|...+.+..++.. ..|++++++|+..+.+++++.
T Consensus 7 fIG-~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLavkP~~~~~vl~~l 83 (272)
T PRK12491 7 FIG-CGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVAN--SADILILSIKPDLYSSVINQI 83 (272)
T ss_pred EEC-ccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHh--hCCEEEEEeChHHHHHHHHHH
Confidence 456 4678888889998888621125888887641111 136666777777765 789999999999999999887
Q ss_pred HHc--CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCc
Q psy3769 399 IES--ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCP 440 (974)
Q Consensus 399 ~~~--gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~ 440 (974)
... +=+.+|=+.+|++-+..+ +... ....+-=+.||..
T Consensus 84 ~~~~~~~~lvISi~AGi~i~~l~---~~l~-~~~~vvR~MPN~~ 123 (272)
T PRK12491 84 KDQIKNDVIVVTIAAGKSIKSTE---NEFD-RKLKVIRVMPNTP 123 (272)
T ss_pred HHhhcCCcEEEEeCCCCcHHHHH---HhcC-CCCcEEEECCChH
Confidence 642 112344455888765544 3332 0123444458764
No 223
>PLN02256 arogenate dehydrogenase
Probab=80.17 E-value=4.4 Score=45.67 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=50.3
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCc--cccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQ--KFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI 399 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~--~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~ 399 (974)
|+| .|..|..+.+.+.+.|++ |+.+++..... .-.|...+.+.+++.. ...|++++++|+..+.+++++..
T Consensus 41 IIG-~G~mG~slA~~L~~~G~~----V~~~d~~~~~~~a~~~gv~~~~~~~e~~~-~~aDvVilavp~~~~~~vl~~l~ 113 (304)
T PLN02256 41 IVG-FGNFGQFLAKTFVKQGHT----VLATSRSDYSDIAAELGVSFFRDPDDFCE-EHPDVVLLCTSILSTEAVLRSLP 113 (304)
T ss_pred EEe-eCHHHHHHHHHHHhCCCE----EEEEECccHHHHHHHcCCeeeCCHHHHhh-CCCCEEEEecCHHHHHHHHHhhh
Confidence 456 466788788888777754 66676663100 1246777888888742 25899999999999999999873
No 224
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.82 E-value=7.7 Score=42.97 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=60.2
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCC--cc---ccccccccchhhhcccCCCcEEEEEecchhHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG--QK---FEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWE 397 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g--~~---i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e 397 (974)
++| .|.+|..+.+.+++.|...+..|+..|+.... +. -.|.....+..++.+ ..|++++++|+..+.+++++
T Consensus 8 ~IG-~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~--~aDvVilav~p~~~~~vl~~ 84 (279)
T PRK07679 8 FLG-AGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLT--DANILFLAMKPKDVAEALIP 84 (279)
T ss_pred EEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHh--cCCEEEEEeCHHHHHHHHHH
Confidence 456 56788888888888772111256777764300 11 136767778777765 78999999999999999988
Q ss_pred HHHc-CC-cEEEEEcCCCChHH
Q psy3769 398 AIES-EL-ELVICITEGIPVRD 417 (974)
Q Consensus 398 ~~~~-gv-~~~vi~s~G~~e~~ 417 (974)
.... .- +.+|-+.+|+..+.
T Consensus 85 l~~~~~~~~liIs~~aGi~~~~ 106 (279)
T PRK07679 85 FKEYIHNNQLIISLLAGVSTHS 106 (279)
T ss_pred HHhhcCCCCEEEEECCCCCHHH
Confidence 7642 11 23344458887543
No 225
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.75 E-value=3.7 Score=44.85 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=58.9
Q ss_pred ccccccCcccccchhhhhccCCCCceEEEEecCCCCC-cc----ccccccccchhhhcccCCCcEEEEEecchhHHHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG-QK----FEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g-~~----i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
.|+| .|..|..+.+.+.+.|+.. ..+...|+.... ++ ..|...+.+..++.+ ..|++++++|++.+.++++
T Consensus 4 giIG-~G~mG~aia~~L~~~g~~~-~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~--~aDvVilav~p~~~~~vl~ 79 (258)
T PRK06476 4 GFIG-TGAITEAMVTGLLTSPADV-SEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVD--RSDVVFLAVRPQIAEEVLR 79 (258)
T ss_pred EEEC-cCHHHHHHHHHHHhCCCCh-heEEEECCCHHHHHHHHHHcCCceEeCCHHHHHH--hCCEEEEEeCHHHHHHHHH
Confidence 3456 5678888888888777642 134555554310 11 225667788888765 6899999999999999988
Q ss_pred HHHHcCCcEEEEEcCCCChHH
Q psy3769 397 EAIESELELVICITEGIPVRD 417 (974)
Q Consensus 397 e~~~~gv~~~vi~s~G~~e~~ 417 (974)
+..-..=+.++-+.+|...+.
T Consensus 80 ~l~~~~~~~vis~~ag~~~~~ 100 (258)
T PRK06476 80 ALRFRPGQTVISVIAATDRAA 100 (258)
T ss_pred HhccCCCCEEEEECCCCCHHH
Confidence 763222234455556666444
No 226
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=79.47 E-value=5.1 Score=47.77 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=66.1
Q ss_pred cccchhhhhccCCCCceEEEEecCCCCCc-c-c------cccccccchhhhcccC-CCcEEEEEecchh-HHHHHHHHHH
Q psy3769 331 GRFHTNLCLNYGNGKKAFVAGVNPKKNGQ-K-F------EEIPIFDTVKNAKNET-GATVSVIYVPAIF-ATSAIWEAIE 400 (974)
Q Consensus 331 G~~v~~~l~~~g~~g~~~V~pVnP~~~g~-~-i------~G~~~y~sl~dip~~~-~vDlavi~vp~~~-v~~~v~e~~~ 400 (974)
|..+.+||.+.||+ |..-|...... + + .|...+.|++|+.+.. .+|++++++|... +.+++++...
T Consensus 2 G~~mA~nL~~~G~~----V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 2 GKNLALNIASHGYT----VAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred cHHHHHHHHhCCCe----EEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 56677899999998 44555543101 1 1 1477889999987532 4899999999864 5556666654
Q ss_pred cCCcEEEEEcCC-CChHHHHHHHHHHhcCCCCceEEccCCcc
Q psy3769 401 SELELVICITEG-IPVRDMLILKNKMKKNNSKTLLLGPNCPG 441 (974)
Q Consensus 401 ~gv~~~vi~s~G-~~e~~~~~l~~~a~~~~~gi~viGPnc~G 441 (974)
.--+.-+|+-.| ..-.+..+..+.++ ++|++.++---.|
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~--~~Gi~fvdapVSG 117 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELA--EKGIHFIGMGVSG 117 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHH--hcCCeEEecCCCC
Confidence 322222444443 23334455567777 8899998755444
No 227
>PRK08655 prephenate dehydrogenase; Provisional
Probab=79.21 E-value=5.2 Score=47.45 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=50.3
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCcc---ccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK---FEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI 399 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~---i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~ 399 (974)
|+|..|..|..+.+.+.+.|++- .++..+|.. ..+ -.|..+..+..+..+ ..|++++++|.+.+.++++++.
T Consensus 5 IIGG~G~mG~slA~~L~~~G~~V--~v~~r~~~~-~~~~a~~~gv~~~~~~~e~~~--~aDvVIlavp~~~~~~vl~~l~ 79 (437)
T PRK08655 5 IIGGTGGLGKWFARFLKEKGFEV--IVTGRDPKK-GKEVAKELGVEYANDNIDAAK--DADIVIISVPINVTEDVIKEVA 79 (437)
T ss_pred EEecCCHHHHHHHHHHHHCCCEE--EEEECChHH-HHHHHHHcCCeeccCHHHHhc--cCCEEEEecCHHHHHHHHHHHH
Confidence 45655678888888888888762 233333332 001 136665667766655 7899999999999999998887
Q ss_pred Hc
Q psy3769 400 ES 401 (974)
Q Consensus 400 ~~ 401 (974)
..
T Consensus 80 ~~ 81 (437)
T PRK08655 80 PH 81 (437)
T ss_pred hh
Confidence 53
No 228
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.95 E-value=2.7 Score=47.69 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=56.0
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCC-ccc----------cc------cccccchhhhcccCCCcEEEEEe
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG-QKF----------EE------IPIFDTVKNAKNETGATVSVIYV 386 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g-~~i----------~G------~~~y~sl~dip~~~~vDlavi~v 386 (974)
+| .|.+|..+...|.+.|++ |..+++.... +.+ .| +....+++++.+ ..|++++++
T Consensus 10 IG-~G~mG~~ia~~L~~~G~~----V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~--~aD~Vi~~v 82 (328)
T PRK14618 10 LG-AGAWGTALAVLAASKGVP----VRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA--GADFAVVAV 82 (328)
T ss_pred EC-cCHHHHHHHHHHHHCCCe----EEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--CCCEEEEEC
Confidence 45 356777777777777765 5555554200 001 13 334557776654 789999999
Q ss_pred cchhHHHHHHHHHHcCCcEEEEEcCCCChHH--HHHHHHHHh
Q psy3769 387 PAIFATSAIWEAIESELELVICITEGIPVRD--MLILKNKMK 426 (974)
Q Consensus 387 p~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~--~~~l~~~a~ 426 (974)
|+..+.++++.+. .+. .++.++.|+...+ .+++.+...
T Consensus 83 ~~~~~~~v~~~l~-~~~-~vi~~~~Gi~~~~~~~~~l~~~l~ 122 (328)
T PRK14618 83 PSKALRETLAGLP-RAL-GYVSCAKGLAPDGGRLSELARVLE 122 (328)
T ss_pred chHHHHHHHHhcC-cCC-EEEEEeeccccCCCccchHHHHHH
Confidence 9998888776543 333 4566677765332 334444444
No 229
>PRK06091 membrane protein FdrA; Validated
Probab=78.92 E-value=1.5 Score=52.62 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=75.0
Q ss_pred CCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCC-----CCHHHHHHHHHHHhhcCCeEEEEEccccccC--ccccc
Q psy3769 261 NGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGG-----ATIKTITEAFKIMMQQNNLKTILVNIFGITG--KTGRF 333 (974)
Q Consensus 261 ~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~-----a~~~~v~~a~~~il~~~~~~~i~vni~G~~~--k~G~~ 333 (974)
.|+||++.-.++++...++.+...|.--..+.-+||. +.--.+.++++.+..||++++|.+ +..+. .....
T Consensus 193 ~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvl--y~kppaE~v~~~ 270 (555)
T PRK06091 193 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAF--VSKPPAEAVRLK 270 (555)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEE--EEecCchHHHHH
Confidence 8999999999999999999999999999999999988 212357788999999999999852 33221 12234
Q ss_pred chhhhhccCCCCceEE-EEecCCCCCccccccccccchhhhc
Q psy3769 334 HTNLCLNYGNGKKAFV-AGVNPKKNGQKFEEIPIFDTVKNAK 374 (974)
Q Consensus 334 v~~~l~~~g~~g~~~V-~pVnP~~~g~~i~G~~~y~sl~dip 374 (974)
.++.+.+. ..| +| +-+.....|..-.|+-...|++|+-
T Consensus 271 fl~aar~~--~KP-VVvlk~Grs~~g~~q~GVi~a~tleEl~ 309 (555)
T PRK06091 271 IINAMKAT--GKP-VVALFLGYTPAVARDENVWFASTLDEAA 309 (555)
T ss_pred HHHHHhhC--CCC-EEEEEecCCchhhhcCCeEEeCCHHHHH
Confidence 44444443 333 33 3333222223446777777888774
No 230
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=78.91 E-value=3.5 Score=46.55 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=46.4
Q ss_pred ccccccchhhhcccCCCcEEEEEecchhHHHHHHHHH---HcCCcEEEEEcCCCChHHHHHHHHHHh
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI---ESELELVICITEGIPVRDMLILKNKMK 426 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~---~~gv~~~vi~s~G~~e~~~~~l~~~a~ 426 (974)
++.+.++++++-+ ..|++++++|...+.+++++.. ..+.+ +++.+-|+.....+.+-+.++
T Consensus 58 ~l~at~Dl~~a~~--~ad~iv~avPs~~~r~v~~~l~~~l~~~~~-iv~~sKGie~~t~~l~seii~ 121 (329)
T COG0240 58 NLKATTDLAEALD--GADIIVIAVPSQALREVLRQLKPLLLKDAI-IVSATKGLEPETGRLLSEIIE 121 (329)
T ss_pred ccccccCHHHHHh--cCCEEEEECChHHHHHHHHHHhhhccCCCe-EEEEeccccCCCcchHHHHHH
Confidence 5777888999876 7999999999999999999864 45555 578888986544444455554
No 231
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=78.55 E-value=8.7 Score=42.24 Aligned_cols=101 Identities=8% Similarity=-0.004 Sum_probs=68.9
Q ss_pred cccccchhhhhccCCCCceEEEEecCCCC--Cccc-cccccccchhhh-cccCCCcEEEEEecchhHHHHHHHHHHcCCc
Q psy3769 329 KTGRFHTNLCLNYGNGKKAFVAGVNPKKN--GQKF-EEIPIFDTVKNA-KNETGATVSVIYVPAIFATSAIWEAIESELE 404 (974)
Q Consensus 329 k~G~~v~~~l~~~g~~g~~~V~pVnP~~~--g~~i-~G~~~y~sl~di-p~~~~vDlavi~vp~~~v~~~v~e~~~~gv~ 404 (974)
..|..+.+.+.+.+-.+. .+..|+.+.. -+.. ...+++.|++++ .+ .+|++|=|-+++.+.+....++++|..
T Consensus 12 aIG~~va~~l~~~~~~~~-~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~DlVVE~A~~~av~e~~~~iL~~g~d 88 (267)
T PRK13301 12 AIASDVAAGLLADAAQPC-QLAALTRNAADLPPALAGRVALLDGLPGLLAW--RPDLVVEAAGQQAIAEHAEGCLTAGLD 88 (267)
T ss_pred HHHHHHHHHHhcCCCCce-EEEEEecCCHHHHHHhhccCcccCCHHHHhhc--CCCEEEECCCHHHHHHHHHHHHhcCCC
Confidence 467777777654322111 3455544320 0111 237789999996 44 899999999999999999999999988
Q ss_pred EEEEEcCC-CChHH-HHHHHHHHhcCCCCceEE
Q psy3769 405 LVICITEG-IPVRD-MLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 405 ~~vi~s~G-~~e~~-~~~l~~~a~~~~~gi~vi 435 (974)
. +++|-| ++..+ .++|.+.|+ ++|-++.
T Consensus 89 l-vv~SvGALaD~~~~~~l~~~A~--~~g~~i~ 118 (267)
T PRK13301 89 M-IICSAGALADDALRARLIAAAE--AGGARIR 118 (267)
T ss_pred E-EEEChhHhcCHHHHHHHHHHHH--hCCCEEE
Confidence 5 677744 66554 467889999 7776554
No 232
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.30 E-value=7.3 Score=43.19 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=60.2
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCC--cc----ccccccccchhhhcccCCCcEEEEEecchhHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG--QK----FEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g--~~----i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
++| .|.+|..+.+.+.+.|.-.+..|+.++++... .. ..+.....+..++.. +.|++++++|+..+.++++
T Consensus 6 iIG-~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~--~aDvVilavpp~~~~~vl~ 82 (277)
T PRK06928 6 FIG-YGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFT--KCDHSFICVPPLAVLPLLK 82 (277)
T ss_pred EEC-ccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHh--hCCEEEEecCHHHHHHHHH
Confidence 355 45677777788877662111147777665300 00 113444567777655 7899999999999999999
Q ss_pred HHHH---cCCcEEEEEcCCCChHHHH
Q psy3769 397 EAIE---SELELVICITEGIPVRDML 419 (974)
Q Consensus 397 e~~~---~gv~~~vi~s~G~~e~~~~ 419 (974)
++.. .+ +.++.++.|+..++.+
T Consensus 83 ~l~~~l~~~-~~ivS~~aGi~~~~l~ 107 (277)
T PRK06928 83 DCAPVLTPD-RHVVSIAAGVSLDDLL 107 (277)
T ss_pred HHHhhcCCC-CEEEEECCCCCHHHHH
Confidence 8864 23 3567788998866544
No 233
>PRK06545 prephenate dehydrogenase; Validated
Probab=78.20 E-value=6.8 Score=45.18 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=65.2
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc---ccccc----ccchhhhcccCCCcEEEEEecchhHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF---EEIPI----FDTVKNAKNETGATVSVIYVPAIFATSAI 395 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i---~G~~~----y~sl~dip~~~~vDlavi~vp~~~v~~~v 395 (974)
|+| .|.+|..+.+.+.+.|++- .++..+|+. .+. .|... ..++.++.. ..|++++++|+..+.+++
T Consensus 5 iIG-~GliG~siA~~L~~~G~~v--~i~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~--~aDlVilavP~~~~~~vl 77 (359)
T PRK06545 5 IVG-LGLIGGSLALAIKAAGPDV--FIIGYDPSA--AQLARALGFGVIDELAADLQRAAA--EADLIVLAVPVDATAALL 77 (359)
T ss_pred EEE-eCHHHHHHHHHHHhcCCCe--EEEEeCCCH--HHHHHHhcCCCCcccccCHHHHhc--CCCEEEEeCCHHHHHHHH
Confidence 345 3567888888998888875 677777764 221 12222 234555544 789999999999999999
Q ss_pred HHHHH--cCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEcc
Q psy3769 396 WEAIE--SELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGP 437 (974)
Q Consensus 396 ~e~~~--~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGP 437 (974)
++... ..-+.++.-.++....-.+++.+. . ..+.+++|-
T Consensus 78 ~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~--~~~~~~ig~ 118 (359)
T PRK06545 78 AELADLELKPGVIVTDVGSVKGAILAEAEAL-L--GDLIRFVGG 118 (359)
T ss_pred HHHhhcCCCCCcEEEeCccccHHHHHHHHHh-c--CCCCeEEee
Confidence 88875 233344444455554333333322 2 356677763
No 234
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=78.04 E-value=2.3 Score=43.27 Aligned_cols=81 Identities=25% Similarity=0.244 Sum_probs=56.2
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc---cc-------cccccchhhhcccCCCcEEEEEec-----
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF---EE-------IPIFDTVKNAKNETGATVSVIYVP----- 387 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i---~G-------~~~y~sl~dip~~~~vDlavi~vp----- 387 (974)
|+|.++..|..+++.|++.|++ |+.+..+. +.. .+ ..-..++.++.. +.|.++.+++
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~----V~~~~R~~--~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~ 74 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHE----VTALVRSP--SKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKD 74 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSE----EEEEESSG--GGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTH
T ss_pred EECCCChHHHHHHHHHHHCCCE----EEEEecCc--hhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhccc
Confidence 5899999999999999999966 55554443 211 12 222234555554 7899988887
Q ss_pred chhHHHHHHHHHHcCCcEEEEEcC
Q psy3769 388 AIFATSAIWEAIESELELVICITE 411 (974)
Q Consensus 388 ~~~v~~~v~e~~~~gv~~~vi~s~ 411 (974)
.+.+..+++.|.+.|++.++++|+
T Consensus 75 ~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 75 VDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ccccccccccccccccccceeeec
Confidence 455667777777889998888774
No 235
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.15 E-value=5 Score=43.99 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=60.1
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc------cccccccchhhhcccCCCcEEEEEecchhHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF------EEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i------~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
|+| .|..|..+.+.+.+.|+. +..|+.++++. +.. .|+.+..+..++.. ..|++++++|+..+.++++
T Consensus 7 iIG-~G~mG~~la~~l~~~g~~-~~~v~v~~r~~--~~~~~~~~~~g~~~~~~~~~~~~--~advVil~v~~~~~~~v~~ 80 (267)
T PRK11880 7 FIG-GGNMASAIIGGLLASGVP-AKDIIVSDPSP--EKRAALAEEYGVRAATDNQEAAQ--EADVVVLAVKPQVMEEVLS 80 (267)
T ss_pred EEe-chHHHHHHHHHHHhCCCC-cceEEEEcCCH--HHHHHHHHhcCCeecCChHHHHh--cCCEEEEEcCHHHHHHHHH
Confidence 356 356777788888877732 11466677653 211 26667777777755 7899999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCChH
Q psy3769 397 EAIESELELVICITEGIPVR 416 (974)
Q Consensus 397 e~~~~gv~~~vi~s~G~~e~ 416 (974)
++...-=+.++-+++|.+.+
T Consensus 81 ~l~~~~~~~vvs~~~gi~~~ 100 (267)
T PRK11880 81 ELKGQLDKLVVSIAAGVTLA 100 (267)
T ss_pred HHHhhcCCEEEEecCCCCHH
Confidence 98764214556667788643
No 236
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.89 E-value=11 Score=43.65 Aligned_cols=116 Identities=12% Similarity=0.036 Sum_probs=84.4
Q ss_pred eeeecCCCCCHHHHHHHHHHHhhcCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccc----cc
Q psy3769 290 NFLDIGGGATIKTITEAFKIMMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEE----IP 365 (974)
Q Consensus 290 nfld~GG~a~~~~v~~a~~~il~~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G----~~ 365 (974)
|-|-+|-||.+=|++.-++.-.+. =|.+.|.+.+.+...++.+.+.+..- .+--=|+.+ ....| -.
T Consensus 3 ~VLI~GtGPvAiQLAv~lk~~~~~------~vGi~~R~S~rSq~f~~aL~~~~~~~--~v~vqn~~h--~~l~G~~~id~ 72 (429)
T PF10100_consen 3 NVLIVGTGPVAIQLAVILKKHGNC------RVGIVGRESVRSQRFFEALARSDGLF--EVSVQNEQH--QALSGECTIDH 72 (429)
T ss_pred ceEEEcCCHHHHHHHHHHHhccCc------eeeeecCcchhHHHHHHHHHhCCCEE--EEeecchhh--hhhcCeEEhhH
Confidence 667888888888877766654321 12446776677778888888754331 344447776 55555 35
Q ss_pred cccchhhhcccCCCcEEEEEecchhHHHHHHHHHH---cCCcEEEEEcCCCChHH
Q psy3769 366 IFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIE---SELELVICITEGIPVRD 417 (974)
Q Consensus 366 ~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~---~gv~~~vi~s~G~~e~~ 417 (974)
+|...+++.. .=|..|+++|+++..+++++.-. .++|.+|.+|+.|...-
T Consensus 73 ~~~~~~~i~g--~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~ 125 (429)
T PF10100_consen 73 VFQDYEEIEG--EWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHL 125 (429)
T ss_pred hhcCHHHhcc--cccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHH
Confidence 6888899965 89999999999999999887654 48999999999987654
No 237
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=76.89 E-value=9 Score=42.67 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=76.7
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCc--cccccccccchhhhcccCCCcEEEEEecchh-HHHHHH---HHHH-
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQ--KFEEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAIW---EAIE- 400 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~--~i~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~---e~~~- 400 (974)
+..|.-+.++|++.||.- .||-.+|...-+ .-.|...+.|..|+-. ..|+++.++|... +.+++. ...+
T Consensus 9 G~MG~pmA~~L~~aG~~v--~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~V~~V~~g~~g~~~~ 84 (286)
T COG2084 9 GIMGSPMAANLLKAGHEV--TVYNRTPEKAAELLAAAGATVAASPAEAAA--EADVVITMLPDDAAVRAVLFGENGLLEG 84 (286)
T ss_pred chhhHHHHHHHHHCCCEE--EEEeCChhhhhHHHHHcCCcccCCHHHHHH--hCCEEEEecCCHHHHHHHHhCccchhhc
Confidence 467888899999999984 455555543101 1238999999988876 8999999998754 455553 2332
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE-ccCCccccccC
Q psy3769 401 SELELVICITEGIPVRDMLILKNKMKKNNSKTLLL-GPNCPGLIVPE 446 (974)
Q Consensus 401 ~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi-GPnc~G~~~~~ 446 (974)
.....++|-.+-+..+..+++.+.++ ++|++.+ .|=+-|.....
T Consensus 85 ~~~G~i~IDmSTisp~~a~~~a~~~~--~~G~~~lDAPVsGg~~~A~ 129 (286)
T COG2084 85 LKPGAIVIDMSTISPETARELAAALA--AKGLEFLDAPVSGGVPGAA 129 (286)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHH--hcCCcEEecCccCCchhhh
Confidence 22345556556677677788888898 9998876 66665555443
No 238
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=75.69 E-value=6.7 Score=46.21 Aligned_cols=97 Identities=20% Similarity=0.404 Sum_probs=75.2
Q ss_pred CCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEE--EEccCCCchHHHHHHHH
Q psy3769 461 GRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIM--IGEIGGLDEIYAANWIK 538 (974)
Q Consensus 461 G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~l--y~E~~g~~~~~~~~f~~ 538 (974)
|+|+.+.--++++.+.++.....|-...-|.-+|+.+ ..-.+...++-+..||+.|+|++ +.-.. +-..-+...++
T Consensus 292 G~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a-~~~~v~~a~~ii~~d~~vk~iliNIfGGI~-~cd~iA~gii~ 369 (422)
T PLN00124 292 GEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNA-SEQQVVEAFKILTSDDKVKAILVNIFGGIM-KCDVIASGIVN 369 (422)
T ss_pred CcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCC-CHHHHHHHHHHHhcCCCCcEEEEEecCCcc-chHHHHHHHHH
Confidence 8999999999999999999999999999999999987 46778889999999999999998 42221 11122333444
Q ss_pred h----cCCCCEEEEecccCCCCCCC
Q psy3769 539 K----NMKKPVIGFIAGITAPPGKR 559 (974)
Q Consensus 539 ~----~~~KPVv~lk~Grs~~~g~~ 559 (974)
+ ..++|||+=-.|..++.|.+
T Consensus 370 a~~~~~~~~pivvRl~Gtn~~~g~~ 394 (422)
T PLN00124 370 AAKQVGLKVPLVVRLEGTNVDQGKR 394 (422)
T ss_pred HHHhcCCCCcEEEEcCCCCHHHHHH
Confidence 4 45799999778877655555
No 239
>PLN02688 pyrroline-5-carboxylate reductase
Probab=75.21 E-value=9.4 Score=41.77 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=60.5
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEe-cCCCCCcc-----ccccccccchhhhcccCCCcEEEEEecchhHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGV-NPKKNGQK-----FEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pV-nP~~~g~~-----i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
++| .+..|..+.++|++.|+..+..|+.. |+.. +. -.|+....+..++.+ ..|++++++|++.+.++++
T Consensus 5 ~IG-~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~--~~~~~~~~~g~~~~~~~~e~~~--~aDvVil~v~~~~~~~vl~ 79 (266)
T PLN02688 5 FIG-AGKMAEAIARGLVASGVVPPSRISTADDSNP--ARRDVFQSLGVKTAASNTEVVK--SSDVIILAVKPQVVKDVLT 79 (266)
T ss_pred EEC-CcHHHHHHHHHHHHCCCCCcceEEEEeCCCH--HHHHHHHHcCCEEeCChHHHHh--cCCEEEEEECcHHHHHHHH
Confidence 355 56788888899998887111146666 6653 21 137777888888765 7899999999999999998
Q ss_pred HHHHc-CC-cEEEEEcCCCChHH
Q psy3769 397 EAIES-EL-ELVICITEGIPVRD 417 (974)
Q Consensus 397 e~~~~-gv-~~~vi~s~G~~e~~ 417 (974)
++... .- +.+|-+++|.+.+.
T Consensus 80 ~l~~~~~~~~~iIs~~~g~~~~~ 102 (266)
T PLN02688 80 ELRPLLSKDKLLVSVAAGITLAD 102 (266)
T ss_pred HHHhhcCCCCEEEEecCCCcHHH
Confidence 87542 22 23344457775443
No 240
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=75.04 E-value=6.6 Score=43.30 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=74.0
Q ss_pred cCcccccchhhhhccC-CCCceEEEEecCCCCCccc------cccccccchhhhcccCCCcEEEEEecchhHHHHHHHHH
Q psy3769 327 TGKTGRFHTNLCLNYG-NGKKAFVAGVNPKKNGQKF------EEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI 399 (974)
Q Consensus 327 ~~k~G~~v~~~l~~~g-~~g~~~V~pVnP~~~g~~i------~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~ 399 (974)
.|+.|..++..+++.| ++. ..|+-.||.. +.. .|+....+-.++.+ ..|+++++|+|...++++.++.
T Consensus 9 ~G~Mg~Ai~~gl~~~g~~~~-~~I~v~~~~~--e~~~~l~~~~g~~~~~~~~~~~~--~advv~LavKPq~~~~vl~~l~ 83 (266)
T COG0345 9 AGNMGEAILSGLLKSGALPP-EEIIVTNRSE--EKRAALAAEYGVVTTTDNQEAVE--EADVVFLAVKPQDLEEVLSKLK 83 (266)
T ss_pred cCHHHHHHHHHHHhcCCCCc-ceEEEeCCCH--HHHHHHHHHcCCcccCcHHHHHh--hCCEEEEEeChHhHHHHHHHhh
Confidence 3567888888899888 553 2789999986 333 25554555556654 7899999999999999999997
Q ss_pred H-cCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcccccc
Q psy3769 400 E-SELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVP 445 (974)
Q Consensus 400 ~-~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~ 445 (974)
. ..=+.+|=+.+|.+-+..++... ...+-=+.||..-.+..
T Consensus 84 ~~~~~~lvISiaAGv~~~~l~~~l~-----~~~vvR~MPNt~a~vg~ 125 (266)
T COG0345 84 PLTKDKLVISIAAGVSIETLERLLG-----GLRVVRVMPNTPALVGA 125 (266)
T ss_pred cccCCCEEEEEeCCCCHHHHHHHcC-----CCceEEeCCChHHHHcC
Confidence 4 23355677779998665543332 12333335998765544
No 241
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=74.83 E-value=8.3 Score=46.16 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=67.0
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCcc---c------cc--cccccchhhhccc-CCCcEEEEEecc-hh
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK---F------EE--IPIFDTVKNAKNE-TGATVSVIYVPA-IF 390 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~---i------~G--~~~y~sl~dip~~-~~vDlavi~vp~-~~ 390 (974)
+| .+.+|..+..+|.+.||+ |+..|.+. +. . .| +.++.|++|+.+. ..+|++++++|+ +.
T Consensus 7 IG-LG~MG~~lA~nL~~~G~~----V~v~dr~~--~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 7 IG-LAVMGQNLALNIASRGFK----ISVYNRTY--EKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred Ee-EhHHHHHHHHHHHHCCCe----EEEEeCCH--HHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 45 356788889999999987 55556553 22 1 14 3467888888642 148988888665 56
Q ss_pred HHHHHHHHHHcCCcEEEEEcCC-CChHHHHHHHHHHhcCCCCceEEccCCcc
Q psy3769 391 ATSAIWEAIESELELVICITEG-IPVRDMLILKNKMKKNNSKTLLLGPNCPG 441 (974)
Q Consensus 391 v~~~v~e~~~~gv~~~vi~s~G-~~e~~~~~l~~~a~~~~~gi~viGPnc~G 441 (974)
+.+++++....--+.-+|+..| ....+..++.+.++ ++|++.++---.|
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~--~~Gi~fldapVSG 129 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE--EKGILYLGMGVSG 129 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH--HcCCeEEcCCCCC
Confidence 6777777664311222334333 22334445556677 8899998755444
No 242
>PLN02712 arogenate dehydrogenase
Probab=74.76 E-value=6.1 Score=49.40 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=53.0
Q ss_pred ccccccCcccccchhhhhccCCCCceEEEEecCCCCCc--cccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQ--KFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI 399 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~--~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~ 399 (974)
.|+| .|..|..+.+.+.+.|++ |+.+++....+ .-.|..++.+++++.+ ...|++++++|+..+.+++++..
T Consensus 373 gIIG-lG~mG~slA~~L~~~G~~----V~~~dr~~~~~~a~~~Gv~~~~~~~el~~-~~aDvVILavP~~~~~~vi~~l~ 446 (667)
T PLN02712 373 AIVG-FGNFGQFLAKTMVKQGHT----VLAYSRSDYSDEAQKLGVSYFSDADDLCE-EHPEVILLCTSILSTEKVLKSLP 446 (667)
T ss_pred EEEe-cCHHHHHHHHHHHHCcCE----EEEEECChHHHHHHHcCCeEeCCHHHHHh-cCCCEEEECCChHHHHHHHHHHH
Confidence 3467 567888888888887765 66777653101 1246777888888753 14799999999999999999876
Q ss_pred H
Q psy3769 400 E 400 (974)
Q Consensus 400 ~ 400 (974)
.
T Consensus 447 ~ 447 (667)
T PLN02712 447 F 447 (667)
T ss_pred H
Confidence 4
No 243
>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only]
Probab=74.36 E-value=2.6 Score=38.38 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=25.0
Q ss_pred CceeeccccCeEEEecCCcEeEEEEEee
Q psy3769 937 DTFYWFNLIDCIVENIHGKLLGTVTEII 964 (974)
Q Consensus 937 ~e~y~~DLiG~~V~d~~g~~lG~V~~v~ 964 (974)
..+++++|.|.+|+|.+|..+|+|.|+.
T Consensus 4 ~~~~~s~l~gk~V~~~~G~~vG~V~dv~ 31 (87)
T COG1873 4 EMMRLSELLGKEVITNDGKYVGTVSDVV 31 (87)
T ss_pred hhheHHHhcCcEEEcCCCeEEEEEEeEE
Confidence 3568899999999999999999999974
No 244
>KOG2741|consensus
Probab=73.72 E-value=9.1 Score=43.34 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=56.1
Q ss_pred ccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcC-CCChHHHHHHHHHHhcCCCCceEEccCCcccc
Q psy3769 365 PIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITE-GIPVRDMLILKNKMKKNNSKTLLLGPNCPGLI 443 (974)
Q Consensus 365 ~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~-G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~ 443 (974)
++|.|.+++-....+|++.|..|-..-.+++..|+++| |++.+=-. ....++.++|+++|+ +.|+-++ -...+-.
T Consensus 59 k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~-K~VL~EKPla~n~~e~~~iveaA~--~rgv~~m-eg~~~R~ 134 (351)
T KOG2741|consen 59 KAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKG-KHVLCEKPLAMNVAEAEEIVEAAE--ARGVFFM-EGLWWRF 134 (351)
T ss_pred ccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcC-CcEEecccccCCHHHHHHHHHHHH--HcCcEEE-eeeeeec
Confidence 47888888876667999999999888889999999988 65444221 344566789999999 8896554 3344444
Q ss_pred cc
Q psy3769 444 VP 445 (974)
Q Consensus 444 ~~ 445 (974)
.|
T Consensus 135 ~P 136 (351)
T KOG2741|consen 135 FP 136 (351)
T ss_pred Cc
Confidence 44
No 245
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=73.71 E-value=7.1 Score=44.29 Aligned_cols=102 Identities=10% Similarity=0.061 Sum_probs=59.8
Q ss_pred Ccccccchhhhhcc-CCCCceEEEEecCCCCCcccccccccc--chhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCc
Q psy3769 328 GKTGRFHTNLCLNY-GNGKKAFVAGVNPKKNGQKFEEIPIFD--TVKNAKNETGATVSVIYVPAIFATSAIWEAIESELE 404 (974)
Q Consensus 328 ~k~G~~v~~~l~~~-g~~g~~~V~pVnP~~~g~~i~G~~~y~--sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~ 404 (974)
|..|..+.+.+.+. ++. .+.-+.++.....-.+.+.|. +..++- .++|++++|+|...-.+.+..|+++|+.
T Consensus 12 GnIGr~~a~al~~~pd~E---LVgV~dr~~~~~~~~~~~v~~~~d~~e~l--~~iDVViIctPs~th~~~~~~~L~aG~N 86 (324)
T TIGR01921 12 GNLGRSVEKAIQQQPDME---LVGVFSRRGAETLDTETPVYAVADDEKHL--DDVDVLILCMGSATDIPEQAPYFAQFAN 86 (324)
T ss_pred cHHHHHHHHHHHhCCCcE---EEEEEcCCcHHHHhhcCCccccCCHHHhc--cCCCEEEEcCCCccCHHHHHHHHHcCCC
Confidence 45677777777654 454 232233331001112233343 444543 3799999999998889999999999988
Q ss_pred EEEEEcCCCC-hHHHHHHHHHHhcCC-CCceEEc
Q psy3769 405 LVICITEGIP-VRDMLILKNKMKKNN-SKTLLLG 436 (974)
Q Consensus 405 ~~vi~s~G~~-e~~~~~l~~~a~~~~-~gi~viG 436 (974)
.+--...... .+..+++-+.|+ + .++.+++
T Consensus 87 VV~s~~~h~~~p~~~~~ld~AAk--~~g~vsvi~ 118 (324)
T TIGR01921 87 TVDSFDNHRDIPRHRQVMDAAAK--AAGNVSVIS 118 (324)
T ss_pred EEECCCcccCCHHHHHHHHHHHH--HcCCEEEEE
Confidence 5322211111 122456677777 6 5788887
No 246
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=72.35 E-value=4.9 Score=36.38 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=24.8
Q ss_pred eCCEEEEEecCCCCHHHHHhhcCCEEEE
Q psy3769 898 HGNYVLANLYGITDRNLATKLQGYYLKI 925 (974)
Q Consensus 898 ~~~~~lvkf~gi~~re~Ae~L~g~~l~v 925 (974)
+.+..|+|+||++|+|+|+.+.|..+..
T Consensus 18 ~~~~aLlkiegv~~~~~a~fylGKrv~y 45 (87)
T PRK04337 18 YNRQVIIKPLGVDDREEAAKLIGRKVIW 45 (87)
T ss_pred CCceEEEEEcCcCCHHHHHhhcCceEEE
Confidence 4578899999999999999999998754
No 247
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=72.20 E-value=13 Score=39.67 Aligned_cols=68 Identities=6% Similarity=0.048 Sum_probs=53.2
Q ss_pred ccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcC-CCChHHH-HHHHHHHhcCCCCceEE
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITE-GIPVRDM-LILKNKMKKNNSKTLLL 435 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~-G~~e~~~-~~l~~~a~~~~~gi~vi 435 (974)
+.+|-.+++|..+ .+|++|=+..++.+.+.+.++.++|+.. +++|- .+++++. +++.+.|+ .+|-++-
T Consensus 47 ~~~~~s~ide~~~--~~DlvVEaAS~~Av~e~~~~~L~~g~d~-iV~SVGALad~~l~erl~~lak--~~~~rv~ 116 (255)
T COG1712 47 GRRCVSDIDELIA--EVDLVVEAASPEAVREYVPKILKAGIDV-IVMSVGALADEGLRERLRELAK--CGGARVY 116 (255)
T ss_pred CCCccccHHHHhh--ccceeeeeCCHHHHHHHhHHHHhcCCCE-EEEechhccChHHHHHHHHHHh--cCCcEEE
Confidence 5566688988865 8999999999999999999999999996 56664 4676664 56778888 6655543
No 248
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=71.96 E-value=14 Score=42.54 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=78.7
Q ss_pred CCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCch-HHHHHHHHh
Q psy3769 461 GRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDE-IYAANWIKK 539 (974)
Q Consensus 461 G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~-~~~~~f~~~ 539 (974)
|+|+.+.-.++++.+.++.....|--...|.-+|+-| ..=.+.+.++.+..||++|+|.+-+=+.-..+ .-++-..++
T Consensus 256 G~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA-~~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi~A 334 (387)
T COG0045 256 GNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGA-TAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAA 334 (387)
T ss_pred CcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCC-CHHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHHHH
Confidence 8999999999999999999998999999999999987 45558899999999999999998765432222 223334444
Q ss_pred ----cCCCCEEEEecccCCCCCCC
Q psy3769 540 ----NMKKPVIGFIAGITAPPGKR 559 (974)
Q Consensus 540 ----~~~KPVv~lk~Grs~~~g~~ 559 (974)
..++|+|+=-.|...+.|++
T Consensus 335 l~e~~~~vPlVVRL~GtN~e~Gk~ 358 (387)
T COG0045 335 LKEVGVNVPLVVRLEGTNVEEGKR 358 (387)
T ss_pred HHhcCCCCCEEEEcCCCCHHHHHH
Confidence 45799999999988767776
No 249
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=71.54 E-value=23 Score=39.63 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=74.7
Q ss_pred CCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCce--EEccCCccccccCccccccCCC
Q psy3769 378 GATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTL--LLGPNCPGLIVPEEIKIGIMPG 455 (974)
Q Consensus 378 ~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~--viGPnc~G~~~~~~~~~~~~~~ 455 (974)
+-|...-...+..+.+++.-|.+.|.+--|+++++.|.-+-..+.+..+ ++|++ ++=...+|.+.........-..
T Consensus 119 dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~--~~gI~~~~I~Dsa~~~~~~~vd~VivGad 196 (301)
T COG1184 119 DGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELR--QSGIPVTVIVDSAVGAFMSRVDKVLVGAD 196 (301)
T ss_pred CCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHH--HcCCceEEEechHHHHHHHhCCEEEECcc
Confidence 4566666678889999999999999887789999998776666677777 77765 6667777777644332111111
Q ss_pred CCCCCCCEEEEeCChhhHHHHHHHHHHcCCceEE
Q psy3769 456 NIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSS 489 (974)
Q Consensus 456 ~~~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~ 489 (974)
....-| ++++++|+...++. |++.+..|-.
T Consensus 197 ~I~~nG--~lvnkiGT~~lA~~--A~e~~~Pf~v 226 (301)
T COG1184 197 AILANG--ALVNKIGTSPLALA--ARELRVPFYV 226 (301)
T ss_pred ceecCC--cEEeccchHHHHHH--HHHhCCCEEE
Confidence 223335 99999999987775 5677777643
No 250
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=71.30 E-value=6.5 Score=38.98 Aligned_cols=90 Identities=16% Similarity=0.229 Sum_probs=56.1
Q ss_pred CCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCHHHHHHHHHHHhhcCCeEEEEEccccccCcccccchhhhhc
Q psy3769 261 NGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTITEAFKIMMQQNNLKTILVNIFGITGKTGRFHTNLCLN 340 (974)
Q Consensus 261 ~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~~~v~~a~~~il~~~~~~~i~vni~G~~~k~G~~v~~~l~~ 340 (974)
.|+|+++...++++.+.+|.....|=-..-|.-+|..++. .+.+.++.+..||++++|++=+=+. +-+...++.+.+
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv-~~~d~l~~~~~D~~t~~I~ly~E~~--~d~~~f~~~~~~ 77 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADV-DFADLLEYLAEDPDTRVIVLYLEGI--GDGRRFLEAARR 77 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS--HHHHHHHHCT-SS--EEEEEES----S-HHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccC-CHHHHHHHHhcCCCCCEEEEEccCC--CCHHHHHHHHHH
Confidence 3899999999999999999999998878888888888865 5788999999999999986433332 224444555554
Q ss_pred cCCCCceEEEEecCC
Q psy3769 341 YGNGKKAFVAGVNPK 355 (974)
Q Consensus 341 ~g~~g~~~V~pVnP~ 355 (974)
...+. +|....+.
T Consensus 78 a~~~K--PVv~lk~G 90 (138)
T PF13607_consen 78 AARRK--PVVVLKAG 90 (138)
T ss_dssp HCCCS---EEEEE--
T ss_pred HhcCC--CEEEEeCC
Confidence 44444 35555444
No 251
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.17 E-value=9.3 Score=42.91 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=63.0
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----ccc--ccccchhhhcccCCCcEEEEEecchhHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEI--PIFDTVKNAKNETGATVSVIYVPAIFATSAI 395 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~--~~y~sl~dip~~~~vDlavi~vp~~~v~~~v 395 (974)
|+| .|..|..+...+.+.|+.- .|+.++++. +.. .|. ....+..+..+ ..|++++++|+....+++
T Consensus 11 IIG-~G~mG~sla~~l~~~g~~~--~V~~~dr~~--~~~~~a~~~g~~~~~~~~~~~~~~--~aDvViiavp~~~~~~v~ 83 (307)
T PRK07502 11 LIG-IGLIGSSLARAIRRLGLAG--EIVGADRSA--ETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGASGAVA 83 (307)
T ss_pred EEe-eCHHHHHHHHHHHhcCCCc--EEEEEECCH--HHHHHHHhCCCCceecCCHHHHhc--CCCEEEECCCHHHHHHHH
Confidence 456 5677888888888878632 577777653 211 232 23456666554 789999999999888888
Q ss_pred HHHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCC
Q psy3769 396 WEAIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNC 439 (974)
Q Consensus 396 ~e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc 439 (974)
++.... .-+.+++..++....-.+++.+.. ..++++++-.+
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~---~~~~~~v~~hP 125 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHL---PEGVHFIPGHP 125 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhC---CCCCeEEeCCC
Confidence 876542 333444444444332222222222 34667776444
No 252
>PRK08507 prephenate dehydrogenase; Validated
Probab=71.04 E-value=11 Score=41.64 Aligned_cols=82 Identities=15% Similarity=0.077 Sum_probs=55.4
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----cccc-cccchhhhcccCCCcEEEEEecchhHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIP-IFDTVKNAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~-~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
|+| .|..|..+...+.+.|+.. .|+.++++. +.. .|.. .+.+.+++. ..|++++++|+..+.++++
T Consensus 5 iIG-~G~mG~sla~~l~~~g~~~--~v~~~d~~~--~~~~~~~~~g~~~~~~~~~~~~---~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 5 IIG-LGLMGGSLGLALKEKGLIS--KVYGYDHNE--LHLKKALELGLVDEIVSFEELK---KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred EEc-cCHHHHHHHHHHHhcCCCC--EEEEEcCCH--HHHHHHHHCCCCcccCCHHHHh---cCCEEEEeCcHHHHHHHHH
Confidence 456 4678888888888888753 588787764 221 2432 344666763 4899999999999999999
Q ss_pred HHHHcCCcEEEEEcCCC
Q psy3769 397 EAIESELELVICITEGI 413 (974)
Q Consensus 397 e~~~~gv~~~vi~s~G~ 413 (974)
+.....-+. +++..|-
T Consensus 77 ~l~~l~~~~-iv~d~gs 92 (275)
T PRK08507 77 KLLDIKENT-TIIDLGS 92 (275)
T ss_pred HHhccCCCC-EEEECcc
Confidence 876522233 4555544
No 253
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=70.80 E-value=1.7e+02 Score=32.18 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHcC-CC--CCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCccc
Q psy3769 3 IYEYQGKEILRKFN-VT--IPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRG 55 (974)
Q Consensus 3 L~E~~ak~lL~~~G-Ip--vp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrg 55 (974)
+.-++..+.|.++. +. .|++...++.+++.+..++-+ .|.+||..-++|||
T Consensus 17 ~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y~--~vylKP~~Gs~G~g 70 (262)
T PF14398_consen 17 FDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKYK--SVYLKPDNGSKGKG 70 (262)
T ss_pred CCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHCC--EEEEEeCCCCCCcc
Confidence 34566777777763 43 799999999999999888875 69999965554443
No 254
>TIGR00948 2a75 L-lysine exporter.
Probab=70.40 E-value=5.9 Score=40.68 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q psy3769 644 YIKIIGGFLLFWISIKLLSND 664 (974)
Q Consensus 644 ~~~~~gg~~Ll~~~~~~~~~~ 664 (974)
.++++|++||+|.|+|+++..
T Consensus 57 ~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 57 VLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999853
No 255
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=70.06 E-value=8 Score=41.43 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=36.2
Q ss_pred CHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh-----cCCCCEEEEecc
Q psy3769 502 KYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK-----NMKKPVIGFIAG 551 (974)
Q Consensus 502 ~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~-----~~~KPVv~lk~G 551 (974)
++.+.|+.+.+||++++|++.+++.|....+...+.++ +.+|||+++-.|
T Consensus 33 ~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~ 87 (222)
T cd07018 33 DLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG 87 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 45566677788999999999999877654444444333 368999998665
No 256
>PRK05849 hypothetical protein; Provisional
Probab=69.99 E-value=1.8e+02 Score=37.22 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=99.7
Q ss_pred HHHHHH--cCCCCCCceeeCC------HHHHHHHHH-HcCCCcEEEEeeeec---CcccccCe--EEE-eC--CHHHHHH
Q psy3769 9 KEILRK--FNVTIPKGILCMN------VDEAIKAAK-KIGGNSWVIKAQIHA---GGRGKCGG--IKL-AQ--SLEQVEK 71 (974)
Q Consensus 9 k~lL~~--~GIpvp~~~~~~s------~eea~~~a~-~ig~~PvVvK~qi~~---ggrgk~GG--V~l-~~--s~ee~~~ 71 (974)
-+-|+. -|.++|+..+++. .++..+... .++..|++|+..... .+-+-+|- -.+ +. +.+++.+
T Consensus 15 L~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~ 94 (783)
T PRK05849 15 LANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLK 94 (783)
T ss_pred HHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHH
Confidence 345666 6889999888764 333333322 334468999973221 11222331 111 32 3348999
Q ss_pred HHHHHHhccccccccCCCCCceeEEEEEEEeccceeEEEEEEEeccCCce--eeeccCCCCcceeecccc-CCcceEEEE
Q psy3769 72 YTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNI--IFMGSNKGGMDIEIISKN-SPELLYKTI 148 (974)
Q Consensus 72 a~~~~l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E~ylgi~~Dr~~~~p--vii~s~~GGv~iE~~~d~-~p~~i~~~~ 148 (974)
+.++.+.+-. + .+-..|+||+|+....=-=|.+++|+..+.+ ++.+. ..|-.-..++-. .|+... +.
T Consensus 95 AI~~V~aS~~-~-------~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~~~iey~-~~G~ge~VVsG~~t~~~~~-~~ 164 (783)
T PRK05849 95 AIEKVIASYG-T-------SKDDEILVQPMLEDIVLSGVAMSRDPESGAPYYVINYD-ESGSTDSVTSGSGGSATTV-YH 164 (783)
T ss_pred HHHHHHHhhC-C-------CCCCeEEEEeCccCCCceEEEEECCCCCCCCceEEEEc-CCCCCcceecccCCCCcee-ee
Confidence 9888876632 0 1225799999996222223788888877644 22222 122221222211 111111 00
Q ss_pred eCCCCCCCHHHHHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEe
Q psy3769 149 IDPLIGLTKNNIDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFN 217 (974)
Q Consensus 149 i~p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ 217 (974)
... .--+++....++.++..+|-+.|.. +..-+| +.++.+|+++.|-+|-.
T Consensus 165 ~~~--------------~~~l~p~~~~~L~~la~~LE~~fg~-dpqDIE---faid~~g~L~lLQ~RPi 215 (783)
T PRK05849 165 YRD--------------ALVFKPPRLKKLIELIRELEALFGC-DFLDIE---FAIDEKEELYILQVRPI 215 (783)
T ss_pred ccc--------------cccCCHHHHHHHHHHHHHHHHHcCC-CCeeeE---EEEccCCEEEEEEccCC
Confidence 000 0124567788888888888888743 234567 78878899999998854
No 257
>PLN02858 fructose-bisphosphate aldolase
Probab=69.92 E-value=9.3 Score=51.67 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=71.8
Q ss_pred ccccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----cccccccchhhhcccCCCcEEEEEec-chhHHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIPIFDTVKNAKNETGATVSVIYVP-AIFATSAI 395 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~~y~sl~dip~~~~vDlavi~vp-~~~v~~~v 395 (974)
.++| .+.+|..+.++|++.||+ |+..|+.. +.. .|.....|..++.+ ..|++++++| ++.+.+++
T Consensus 328 GfIG-lG~MG~~mA~~L~~~G~~----V~v~dr~~--~~~~~l~~~Ga~~~~s~~e~~~--~aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 328 GFIG-LGAMGFGMASHLLKSNFS----VCGYDVYK--PTLVRFENAGGLAGNSPAEVAK--DVDVLVIMVANEVQAENVL 398 (1378)
T ss_pred EEEC-chHHHHHHHHHHHHCCCE----EEEEeCCH--HHHHHHHHcCCeecCCHHHHHh--cCCEEEEecCChHHHHHHH
Confidence 3455 456888899999999987 56666653 222 25556778888876 7999999999 66677776
Q ss_pred H---HHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCC--CCceEE-ccCCcccc
Q psy3769 396 W---EAIES-ELELVICITEGIPVRDMLILKNKMKKNN--SKTLLL-GPNCPGLI 443 (974)
Q Consensus 396 ~---e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~--~gi~vi-GPnc~G~~ 443 (974)
. .+.+. ....+++-.+-......+++.+.++ + +|++++ .|=+-|..
T Consensus 399 ~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~--~~g~g~~~lDAPVsGg~~ 451 (1378)
T PLN02858 399 FGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLE--NEGRDIKLVDAPVSGGVK 451 (1378)
T ss_pred hchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHH--hhCCCcEEEEccCCCChh
Confidence 2 23332 2234445444444455566777777 6 788866 56554443
No 258
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=69.79 E-value=30 Score=40.20 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=52.0
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcC
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESE 402 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~g 402 (974)
|+|-.|..|..+...+.+.|+. |+.++++. ..+.+++.. ..|++++++|.....+++++.....
T Consensus 103 IiGG~GlmG~slA~~l~~~G~~----V~~~d~~~----------~~~~~~~~~--~aDlVilavP~~~~~~~~~~l~~l~ 166 (374)
T PRK11199 103 IVGGKGQLGRLFAKMLTLSGYQ----VRILEQDD----------WDRAEDILA--DAGMVIVSVPIHLTEEVIARLPPLP 166 (374)
T ss_pred EEcCCChhhHHHHHHHHHCCCe----EEEeCCCc----------chhHHHHHh--cCCEEEEeCcHHHHHHHHHHHhCCC
Confidence 5676788999999999988876 77776542 135556554 6899999999999999998876633
Q ss_pred CcEEEEEc
Q psy3769 403 LELVICIT 410 (974)
Q Consensus 403 v~~~vi~s 410 (974)
-.. +++.
T Consensus 167 ~~~-iv~D 173 (374)
T PRK11199 167 EDC-ILVD 173 (374)
T ss_pred CCc-EEEE
Confidence 333 4444
No 259
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=69.71 E-value=4.8 Score=42.93 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=52.6
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----cccc----ccc---chhhhcccCCCcEEEEEec---
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIP----IFD---TVKNAKNETGATVSVIYVP--- 387 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~----~y~---sl~dip~~~~vDlavi~vp--- 387 (974)
|+|.+|+.|..+++.|++.+++ +...+++.. .+.. .|.. -|. +|.++-. .+|.+++++|
T Consensus 3 V~GatG~~G~~v~~~L~~~~~~---V~~l~R~~~-~~~~~~l~~~g~~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 3 VTGATGNQGRSVVRALLSAGFS---VRALVRDPS-SDRAQQLQALGAEVVEADYDDPESLVAALK--GVDAVFSVTPPSH 76 (233)
T ss_dssp EETTTSHHHHHHHHHHHHTTGC---EEEEESSSH-HHHHHHHHHTTTEEEES-TT-HHHHHHHHT--TCSEEEEESSCSC
T ss_pred EECCccHHHHHHHHHHHhCCCC---cEEEEeccc-hhhhhhhhcccceEeecccCCHHHHHHHHc--CCceEEeecCcch
Confidence 5899999999999999998887 556666532 0111 1221 132 3333333 7899988888
Q ss_pred ---chhHHHHHHHHHHcCCcEEEEEc
Q psy3769 388 ---AIFATSAIWEAIESELELVICIT 410 (974)
Q Consensus 388 ---~~~v~~~v~e~~~~gv~~~vi~s 410 (974)
.+....+++.|.++||+.++ ++
T Consensus 77 ~~~~~~~~~li~Aa~~agVk~~v-~s 101 (233)
T PF05368_consen 77 PSELEQQKNLIDAAKAAGVKHFV-PS 101 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT-SEEE-ES
T ss_pred hhhhhhhhhHHHhhhccccceEE-EE
Confidence 33566788888888999854 55
No 260
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=69.59 E-value=14 Score=46.83 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=65.5
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----cccc--cccchhhhcccCCCcEEEEEecchhHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIP--IFDTVKNAKNETGATVSVIYVPAIFATSAI 395 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~--~y~sl~dip~~~~vDlavi~vp~~~v~~~v 395 (974)
|+| .|..|..+.+.+.+.|+.- .|+.++++. +.. .|.. ...++.++.+ ..|++++++|+..+.+++
T Consensus 8 IIG-~G~mG~ala~~l~~~G~~~--~V~~~d~~~--~~~~~a~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~vl 80 (735)
T PRK14806 8 VIG-LGLIGGSFAKALRERGLAR--EVVAVDRRA--KSLELAVSLGVIDRGEEDLAEAVS--GADVIVLAVPVLAMEKVL 80 (735)
T ss_pred EEe-eCHHHHHHHHHHHhcCCCC--EEEEEECCh--hHHHHHHHCCCCCcccCCHHHHhc--CCCEEEECCCHHHHHHHH
Confidence 356 4568888888888888632 577787764 221 2432 3345666555 789999999999999999
Q ss_pred HHHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 396 WEAIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 396 ~e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
++..+. .-+.+++..++....-.+++.+... +..+|++
T Consensus 81 ~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~--~~~~r~~ 119 (735)
T PRK14806 81 ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFG--ELPAGFV 119 (735)
T ss_pred HHHHHhcCCCcEEEEcCCCchHHHHHHHHhcc--ccCCeEE
Confidence 887753 2234455456665443444444443 3356765
No 261
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=69.48 E-value=7.3 Score=43.19 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=51.6
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----cc-cccccchhhhcccCCCcEEEEEecchhHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EE-IPIFDTVKNAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G-~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
|+| .|..|..+...+.+.|++ |+.++++. +.. .| .....+-.+... ..|++++++|...+.++++
T Consensus 5 IIG-~G~mG~sla~~L~~~g~~----V~~~d~~~--~~~~~a~~~g~~~~~~~~~~~~~--~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 5 IVG-LGLIGGSLGLDLRSLGHT----VYGVSRRE--STCERAIERGLVDEASTDLSLLK--DCDLVILALPIGLLLPPSE 75 (279)
T ss_pred EEe-ecHHHHHHHHHHHHCCCE----EEEEECCH--HHHHHHHHCCCcccccCCHhHhc--CCCEEEEcCCHHHHHHHHH
Confidence 456 466788888888887765 66676653 211 12 222222223333 6899999999999999998
Q ss_pred HHHHc-CCcEEEEEcCCCC
Q psy3769 397 EAIES-ELELVICITEGIP 414 (974)
Q Consensus 397 e~~~~-gv~~~vi~s~G~~ 414 (974)
+.... .-+.++.-.++..
T Consensus 76 ~l~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 76 QLIPALPPEAIVTDVGSVK 94 (279)
T ss_pred HHHHhCCCCcEEEeCcchH
Confidence 88764 3344444344454
No 262
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=68.86 E-value=15 Score=42.58 Aligned_cols=114 Identities=7% Similarity=0.019 Sum_probs=64.6
Q ss_pred ccccccCcccccchhhhh-ccCCCCceEEEEecCCCCCccc---cc--ccccc--chhhhcccCCCcEEEEEecchhHHH
Q psy3769 322 NIFGITGKTGRFHTNLCL-NYGNGKKAFVAGVNPKKNGQKF---EE--IPIFD--TVKNAKNETGATVSVIYVPAIFATS 393 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~-~~g~~g~~~V~pVnP~~~g~~i---~G--~~~y~--sl~dip~~~~vDlavi~vp~~~v~~ 393 (974)
.|+|.|+-.|..+++.++ +..|.-. .+..+.....|... .| ..++. +..+. . .+|+++.+.|.+...+
T Consensus 5 AIVGATG~vG~ell~llL~~~~f~~~-~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~-~--~~Divf~a~~~~~s~~ 80 (369)
T PRK06598 5 GFVGWRGMVGSVLMQRMVEENDFDLI-EPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDAL-K--KLDIIITCQGGDYTNE 80 (369)
T ss_pred EEEeCCCHHHHHHHHHHHhCCCCCcC-cEEEecchhhCCcccccCCCcceEEecCChhHh-c--CCCEEEECCCHHHHHH
Confidence 346888888888887455 3345410 23334332222222 12 12221 12222 2 6899999999999999
Q ss_pred HHHHHHHcCCcEEEE-EcCCCC----------hHHHHHHHHHHhcCCCCc-eEEccCCccc
Q psy3769 394 AIWEAIESELELVIC-ITEGIP----------VRDMLILKNKMKKNNSKT-LLLGPNCPGL 442 (974)
Q Consensus 394 ~v~e~~~~gv~~~vi-~s~G~~----------e~~~~~l~~~a~~~~~gi-~viGPnc~G~ 442 (974)
...++.++|++++|| .|+-|. |--.+.+.. .. ++|+ .+..|||.-.
T Consensus 81 ~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~--~~g~~iIanPnC~tt 138 (369)
T PRK06598 81 VYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-AL--ANGVKTFVGGNCTVS 138 (369)
T ss_pred HHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hh--hcCCCEEEcCChHHH
Confidence 999999999874333 333332 222233433 33 4575 5779999743
No 263
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=68.84 E-value=19 Score=40.89 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=67.9
Q ss_pred ccccccCcccccchhhhhccCCCCc-eEEEEecCCCCCcc-c-ccc---ccccchhhhcccCCCcEEEEEecchhHHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKK-AFVAGVNPKKNGQK-F-EEI---PIFDTVKNAKNETGATVSVIYVPAIFATSAI 395 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~-~~V~pVnP~~~g~~-i-~G~---~~y~sl~dip~~~~vDlavi~vp~~~v~~~v 395 (974)
.+.|.|+-.|..+++.|.+..|.-. -.++.-.++. |++ + .+- +.-.+..|......+|+++.+.+.+...+..
T Consensus 5 avvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSa-G~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~~~ 83 (334)
T COG0136 5 AVLGATGAVGQVLLELLEERHFPFEELVLLASARSA-GKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKEVE 83 (334)
T ss_pred EEEeccchHHHHHHHHHHhcCCCcceEEEEeccccc-CCccccccCccccCccccccccccccCCEEEEeCchHHHHHHH
Confidence 4579999999999988887666531 0223333444 332 1 111 2222222333223699999999999999999
Q ss_pred HHHHHcCCcEEEEEc--CCCChH----------HHHHHHHHHhcCCCCceEEccCCccc
Q psy3769 396 WEAIESELELVICIT--EGIPVR----------DMLILKNKMKKNNSKTLLLGPNCPGL 442 (974)
Q Consensus 396 ~e~~~~gv~~~vi~s--~G~~e~----------~~~~l~~~a~~~~~gi~viGPnc~G~ 442 (974)
.++.++| ++|++ +-+.-+ -.+.|.+.- ++|--+.+|||.-.
T Consensus 84 p~~~~~G---~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~---~rg~IianpNCst~ 136 (334)
T COG0136 84 PKAAEAG---CVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQ---KRGFIIANPNCSTI 136 (334)
T ss_pred HHHHHcC---CEEEeCCcccccCCCCCEecCCcCHHHHHhhh---hCCCEEECCChHHH
Confidence 9999999 34444 333211 123344433 34556889999743
No 264
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=68.68 E-value=11 Score=40.07 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=38.6
Q ss_pred CCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh----cCCCCEEEEecccC
Q psy3769 501 LKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK----NMKKPVIGFIAGIT 553 (974)
Q Consensus 501 v~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~----~~~KPVv~lk~Grs 553 (974)
-++.+.++.+.+||++++|++.+++.|.......++.++ ..+||||++--|-.
T Consensus 28 ~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a 84 (214)
T cd07022 28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLA 84 (214)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 457778888889999999999999876433333344433 22799999988764
No 265
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=68.67 E-value=20 Score=38.29 Aligned_cols=108 Identities=15% Similarity=0.024 Sum_probs=68.9
Q ss_pred CcccccchhhhhccC-CCCceEEEEecCCCCCcc-ccccccccchhhhcccCCCcEEEE-EecchhHHHHHHHHHHcCCc
Q psy3769 328 GKTGRFHTNLCLNYG-NGKKAFVAGVNPKKNGQK-FEEIPIFDTVKNAKNETGATVSVI-YVPAIFATSAIWEAIESELE 404 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g-~~g~~~V~pVnP~~~g~~-i~G~~~y~sl~dip~~~~vDlavi-~vp~~~v~~~v~e~~~~gv~ 404 (974)
+++|.++.+++.+++ |.- .+.-++....-++ |.- | ..-|.++| +.|+++. .+.++-..++.+.|.+.|++
T Consensus 6 G~yGeR~~~~i~~~~~~~~--~v~~~~~p~~l~efId~-p-ee~Lp~i~---~~Dl~I~y~lHPDl~~~l~~~~~e~g~k 78 (217)
T PF02593_consen 6 GKYGERVIENIKNYFDFCR--SVIVYEIPEDLPEFIDD-P-EEYLPKIP---EADLLIAYGLHPDLTYELPEIAKEAGVK 78 (217)
T ss_pred CcchHHHHHHHHhcCCCCc--eEEEEeCCccccccccC-h-HHHccCCC---CCCEEEEeccCchhHHHHHHHHHHcCCC
Confidence 578899999998664 441 2322222110122 211 1 11233344 5799987 57999999999999999999
Q ss_pred EEEEEcCCCChHH-HHHHHHHHhcCCCCceEEccCCcccccc
Q psy3769 405 LVICITEGIPVRD-MLILKNKMKKNNSKTLLLGPNCPGLIVP 445 (974)
Q Consensus 405 ~~vi~s~G~~e~~-~~~l~~~a~~~~~gi~viGPnc~G~~~~ 445 (974)
++|+-+ ..+..+ ..++.+.++ +.|+.+.-|+-+--+.+
T Consensus 79 avIvp~-~~~~~g~~~~lk~~~e--~~gi~~~~P~~~CsL~~ 117 (217)
T PF02593_consen 79 AVIVPS-ESPKPGLRRQLKKQLE--EFGIEVEFPKPFCSLEE 117 (217)
T ss_pred EEEEec-CCCccchHHHHHHHHH--hcCceeecCccccccCC
Confidence 855544 333323 356788999 99999999996654443
No 266
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=68.21 E-value=31 Score=36.20 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHcccCCccccceEEEehhHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q psy3769 595 GSTDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRI-ILV--IFSINLLNLKYIKIIGGFLLFWISIKLLSNDH 665 (974)
Q Consensus 595 s~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~-~~~--~~~~~ll~~~~~~~~gg~~Ll~~~~~~~~~~~ 665 (974)
..|+.++..+.+.+.. +.|++-++.|-..+...=+ +.+ +++..++--.|+.=+-|++=+|+++|.+.+++
T Consensus 5 niDdi~vL~~fF~~~~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~iP~~wIlGlLGliPI~lGi~~l~~~~ 77 (193)
T TIGR00779 5 GVDLLVILLIFFARAK-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLIPEKWVLGLLGLIPIYLGIKVAIKGE 77 (193)
T ss_pred cHHHHHHHHHHHHHcc-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHhHHHHHHHHHHHhccc
Confidence 4588888877776666 7778888888665544332 222 22222222247755568888999998876654
No 267
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=67.93 E-value=9 Score=49.94 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=54.3
Q ss_pred ccchhhhccc-CCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcccccc
Q psy3769 367 FDTVKNAKNE-TGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVP 445 (974)
Q Consensus 367 y~sl~dip~~-~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~ 445 (974)
|.+.+++.+. ..+|++++++|+..-.++++.|++.|+. ++..+ +..++..+|.+.|+ ++|+.++ |.| | ++|
T Consensus 636 v~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkH-vv~ek--y~~~e~~~L~e~Ak--~AGV~~m-~e~-G-lDP 707 (1042)
T PLN02819 636 VSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKH-LVTAS--YVSEEMSALDSKAK--EAGITIL-CEM-G-LDP 707 (1042)
T ss_pred cCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCC-EEECc--CCHHHHHHHHHHHH--HcCCEEE-ECC-c-cCH
Confidence 5565655421 2699999999999999999999999975 34443 55666788999999 9998877 555 3 555
Q ss_pred C
Q psy3769 446 E 446 (974)
Q Consensus 446 ~ 446 (974)
+
T Consensus 708 G 708 (1042)
T PLN02819 708 G 708 (1042)
T ss_pred H
Confidence 4
No 268
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=67.64 E-value=12 Score=37.71 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=38.7
Q ss_pred CHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh--cCCCCEEEEecccC
Q psy3769 502 KYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK--NMKKPVIGFIAGIT 553 (974)
Q Consensus 502 ~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~--~~~KPVv~lk~Grs 553 (974)
++.+.|+.+.+||+++.|++++.+.|.....+..+.++ ..+|||+++--|..
T Consensus 15 ~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~ 68 (161)
T cd00394 15 QLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQA 68 (161)
T ss_pred HHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 35677788889999999999998776543444545444 45599999988775
No 269
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=67.61 E-value=11 Score=43.37 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=39.1
Q ss_pred ccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCC
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEG 412 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G 412 (974)
|++.+.+++++.+ .+|+++.++|+....+..+.|.++|.+ ++++++
T Consensus 65 ~i~V~~~~~el~~--~vDVVIdaT~~~~~~e~a~~~~~aGk~--VI~~~~ 110 (341)
T PRK04207 65 GIPVAGTIEDLLE--KADIVVDATPGGVGAKNKELYEKAGVK--AIFQGG 110 (341)
T ss_pred ceEEcCChhHhhc--cCCEEEECCCchhhHHHHHHHHHCCCE--EEEcCC
Confidence 6788888888876 799999999999999999999999944 466655
No 270
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=67.49 E-value=13 Score=38.31 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=36.2
Q ss_pred CHHHHHHHhhhCCCccEEEEEEccCCCchHHHHH---HHHh--cCCCCEEEEecccC
Q psy3769 502 KYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAAN---WIKK--NMKKPVIGFIAGIT 553 (974)
Q Consensus 502 ~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~---f~~~--~~~KPVv~lk~Grs 553 (974)
.+.+.++.+.+||++|+|++.+.+.|......+. .++. +.+||||++--|..
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a 82 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNA 82 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCch
Confidence 4555666667899999999999887654322222 2322 46899999988775
No 271
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=67.05 E-value=14 Score=38.98 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=37.9
Q ss_pred CHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh-----cCCCCEEEEecccC
Q psy3769 502 KYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK-----NMKKPVIGFIAGIT 553 (974)
Q Consensus 502 ~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~-----~~~KPVv~lk~Grs 553 (974)
.+.+.++.+.+||+.++|++++.+.|........+.++ ..+|||+++--|-+
T Consensus 21 ~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~ 77 (208)
T cd07023 21 SLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVA 77 (208)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcc
Confidence 46777888889999999999999876543333333222 45899999998865
No 272
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=67.04 E-value=15 Score=42.20 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=39.5
Q ss_pred ccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc--CCcEEEEEcCCCChH
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES--ELELVICITEGIPVR 416 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~--gv~~~vi~s~G~~e~ 416 (974)
.+.+..+++++.+ ..|++++++|+..+.+++++.... .-..+|.++-|+..+
T Consensus 69 ~i~at~dl~eal~--~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 69 NLVAVPDLVEAAK--GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred CeEEECCHHHHHh--cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 4556778888765 789999999999999998887643 113467888898654
No 273
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=66.80 E-value=9.2 Score=43.92 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=55.8
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCC-CCcccc-------cc--cccc--chhhhcccCCCcEEEEEecchh
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKK-NGQKFE-------EI--PIFD--TVKNAKNETGATVSVIYVPAIF 390 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~-~g~~i~-------G~--~~y~--sl~dip~~~~vDlavi~vp~~~ 390 (974)
|+|.||-.|..+++.|.++..-. .++.+.++. .|+.+. +. ..+. +.+++.. .+|++++++|...
T Consensus 5 IiGATG~vG~ellr~L~~hP~~e--l~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~~~ 80 (346)
T TIGR01850 5 IVGASGYTGGELLRLLLNHPEVE--ITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPHGV 80 (346)
T ss_pred EECCCCHHHHHHHHHHHcCCCce--EEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCchH
Confidence 46888888888888887663221 333433321 222221 11 1122 2334432 6999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCh
Q psy3769 391 ATSAIWEAIESELELVICITEGIPV 415 (974)
Q Consensus 391 v~~~v~e~~~~gv~~~vi~s~G~~e 415 (974)
..+.+.++.++|++ +|-+|+.|.-
T Consensus 81 s~~~~~~~~~~G~~-VIDlS~~fR~ 104 (346)
T TIGR01850 81 SAELAPELLAAGVK-VIDLSADFRL 104 (346)
T ss_pred HHHHHHHHHhCCCE-EEeCChhhhc
Confidence 99999999999955 6778877753
No 274
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=66.57 E-value=13 Score=39.50 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=38.7
Q ss_pred CCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHH---HHh--cCCCCEEEEecccC
Q psy3769 501 LKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANW---IKK--NMKKPVIGFIAGIT 553 (974)
Q Consensus 501 v~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f---~~~--~~~KPVv~lk~Grs 553 (974)
-++.+.++.+.+||++++|++.+.+.|.......++ ++. ..+||||++-.|.+
T Consensus 24 ~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a 81 (211)
T cd07019 24 DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAA 81 (211)
T ss_pred HHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 346778888899999999999988776543332222 222 46899999988875
No 275
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=65.32 E-value=9.3 Score=36.64 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=29.5
Q ss_pred CCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCC
Q psy3769 378 GATVSVIYVPAIFATSAIWEAIESELELVICITEGIP 414 (974)
Q Consensus 378 ~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~ 414 (974)
.+|+++.|+|.....+...++.++|++ +|=+|+.|.
T Consensus 66 ~~Dvvf~a~~~~~~~~~~~~~~~~g~~-ViD~s~~~R 101 (121)
T PF01118_consen 66 DVDVVFLALPHGASKELAPKLLKAGIK-VIDLSGDFR 101 (121)
T ss_dssp TESEEEE-SCHHHHHHHHHHHHHTTSE-EEESSSTTT
T ss_pred cCCEEEecCchhHHHHHHHHHhhCCcE-EEeCCHHHh
Confidence 799999999999999999999999995 455555553
No 276
>PRK08818 prephenate dehydrogenase; Provisional
Probab=64.83 E-value=23 Score=41.06 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=47.8
Q ss_pred cccccCcccccchhhhhcc-CCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc
Q psy3769 323 IFGITGKTGRFHTNLCLNY-GNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES 401 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~-g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~ 401 (974)
|+|.+|..|....+.+.+. |+ .|+.+.+.. + ...+..+... ..|++++|+|.+.+.+++++....
T Consensus 9 IIGl~GliGgslA~alk~~~~~----~V~g~D~~d---~-----~~~~~~~~v~--~aDlVilavPv~~~~~~l~~l~~~ 74 (370)
T PRK08818 9 IVGSAGAYGRWLARFLRTRMQL----EVIGHDPAD---P-----GSLDPATLLQ--RADVLIFSAPIRHTAALIEEYVAL 74 (370)
T ss_pred EECCCCHHHHHHHHHHHhcCCC----EEEEEcCCc---c-----ccCCHHHHhc--CCCEEEEeCCHHHHHHHHHHHhhh
Confidence 4677778888888888754 33 588887752 1 1224555544 789999999999999999999864
No 277
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=64.72 E-value=11 Score=42.60 Aligned_cols=61 Identities=16% Similarity=0.343 Sum_probs=54.3
Q ss_pred cCCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCC-CHHHHHHHHHHHhhcCCeEEEE
Q psy3769 260 LNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGA-TIKTITEAFKIMMQQNNLKTIL 320 (974)
Q Consensus 260 l~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a-~~~~v~~a~~~il~~~~~~~i~ 320 (974)
..|+||++.-.++|+...+|.+...|---..+.-+||.+ .--+..+.++.+.+||++++|+
T Consensus 168 ~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Iv 229 (317)
T PTZ00187 168 KKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGII 229 (317)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEE
Confidence 379999999999999999999999998889999999997 2345778899999999999985
No 278
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=64.59 E-value=11 Score=42.06 Aligned_cols=61 Identities=15% Similarity=0.317 Sum_probs=53.8
Q ss_pred CCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCC-HHHHHHHHHHHhhcCCeEEEEE
Q psy3769 261 NGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGAT-IKTITEAFKIMMQQNNLKTILV 321 (974)
Q Consensus 261 ~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~-~~~v~~a~~~il~~~~~~~i~v 321 (974)
+|+|+.+.-.++++++.+|.....|---.-|.-+|..+. .-.+.+.++.+.+||++++|++
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~l 204 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVM 204 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEE
Confidence 799999999999999999999999988889999999964 2356788999999999999853
No 279
>PLN02712 arogenate dehydrogenase
Probab=64.41 E-value=16 Score=45.79 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=52.1
Q ss_pred ccccccCcccccchhhhhccCCCCceEEEEecCCCCC--ccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG--QKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI 399 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g--~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~ 399 (974)
.|+| .|..|..+.+.+.+.|++ |+.+++.... ..-.|+..+.+.+++.. ...|++++++|+..+.+++++..
T Consensus 56 gIIG-~G~mG~slA~~L~~~G~~----V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~-~~aDvViLavP~~~~~~vl~~l~ 129 (667)
T PLN02712 56 AIIG-FGNYGQFLAKTLISQGHT----VLAHSRSDHSLAARSLGVSFFLDPHDLCE-RHPDVILLCTSIISTENVLKSLP 129 (667)
T ss_pred EEEc-cCHHHHHHHHHHHHCCCE----EEEEeCCHHHHHHHHcCCEEeCCHHHHhh-cCCCEEEEcCCHHHHHHHHHhhh
Confidence 4567 578888888888888865 6666664200 11247777888888542 25899999999999999998875
No 280
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=64.10 E-value=14 Score=34.08 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=23.2
Q ss_pred CCEEEEEecCCCCHHHHHhhcCCEE-EEeCC
Q psy3769 899 GNYVLANLYGITDRNLATKLQGYYL-KISIN 928 (974)
Q Consensus 899 ~~~~lvkf~gi~~re~Ae~L~g~~l-~v~~~ 928 (974)
.+..|+|+||++|+++|+.+.|..+ |+.+.
T Consensus 19 ~~~aLlKiegV~~~~~a~fylGKrv~yvyk~ 49 (95)
T PF01247_consen 19 PNTALLKIEGVNTKEDAQFYLGKRVAYVYKA 49 (95)
T ss_dssp EEEEEEEESS-STCHHHHTTTT-EEEEEECE
T ss_pred CCeeEEeecCccCHHHHHhhcCcEEEEEEec
Confidence 4578999999999999999999876 44554
No 281
>PRK06270 homoserine dehydrogenase; Provisional
Probab=63.43 E-value=14 Score=42.33 Aligned_cols=64 Identities=20% Similarity=0.103 Sum_probs=44.2
Q ss_pred chhhhcccCCCcEEEEEecchh-----HHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 369 TVKNAKNETGATVSVIYVPAIF-----ATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 369 sl~dip~~~~vDlavi~vp~~~-----v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
++.++.....+|+++.++|+.. ..+.+++|+++|.. +|+-+.+--.....+|.+.|+ ++|..+.
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gkh-VVtaNK~pla~~~~eL~~~A~--~~g~~~~ 148 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKH-VVTSNKGPLALAYKELKELAK--KNGVRFR 148 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCE-EEcCCcHHHHhhHHHHHHHHH--HcCCEEE
Confidence 7777765457999999998633 47788999999964 344222211122357899999 8888776
No 282
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=63.38 E-value=19 Score=41.36 Aligned_cols=114 Identities=14% Similarity=0.213 Sum_probs=65.9
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEe-cCCCCCcccc--cc-ccccchh-hhcccCCCcEEEEEecchhHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGV-NPKKNGQKFE--EI-PIFDTVK-NAKNETGATVSVIYVPAIFATSAIWE 397 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pV-nP~~~g~~i~--G~-~~y~sl~-dip~~~~vDlavi~vp~~~v~~~v~e 397 (974)
|+|.++..|..+++.|.+.++.-. .+..+ ..+..|+.+. |. ..+..++ +... .+|++++++|.+...+.+.+
T Consensus 12 VvGAtG~vG~eLlrlL~~~~hP~~-~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~--~~D~vf~a~p~~~s~~~~~~ 88 (344)
T PLN02383 12 IVGVTGAVGQEFLSVLTDRDFPYS-SLKMLASARSAGKKVTFEGRDYTVEELTEDSFD--GVDIALFSAGGSISKKFGPI 88 (344)
T ss_pred EEcCCChHHHHHHHHHHhCCCCcc-eEEEEEccCCCCCeeeecCceeEEEeCCHHHHc--CCCEEEECCCcHHHHHHHHH
Confidence 579999999999988887555421 23322 2222233321 11 1122222 1112 69999999999999999999
Q ss_pred HHHcCCcEEEEEcCCCChH----------HHHHHHHHHhcC-CCCceEEccCCcc
Q psy3769 398 AIESELELVICITEGIPVR----------DMLILKNKMKKN-NSKTLLLGPNCPG 441 (974)
Q Consensus 398 ~~~~gv~~~vi~s~G~~e~----------~~~~l~~~a~~~-~~gi~viGPnc~G 441 (974)
+.++|++ +|=+|+-|.-+ -.+.|.. ++.. +++=.|-.|||.-
T Consensus 89 ~~~~g~~-VIDlS~~fR~~~~~p~~vPEvn~~~i~~-~~~~~~~~~iIanPgC~~ 141 (344)
T PLN02383 89 AVDKGAV-VVDNSSAFRMEEGVPLVIPEVNPEAMKH-IKLGKGKGALIANPNCST 141 (344)
T ss_pred HHhCCCE-EEECCchhhcCCCCceECCCcCHHHHHh-hhhcccCCcEEECCCcHH
Confidence 9998876 45566555322 1233333 2200 1244788999974
No 283
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=63.37 E-value=16 Score=41.18 Aligned_cols=60 Identities=15% Similarity=0.305 Sum_probs=53.9
Q ss_pred CCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCC--CCHHHHHHHHHHHhhcCCeEEEEE
Q psy3769 261 NGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGG--ATIKTITEAFKIMMQQNNLKTILV 321 (974)
Q Consensus 261 ~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~--a~~~~v~~a~~~il~~~~~~~i~v 321 (974)
.|+|+++.-.++++++.+|.....|---.-+.-+|+. ++. .+.+.++.+.+||++++|++
T Consensus 150 ~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv-~~~d~L~yl~~Dp~T~~I~l 211 (300)
T PLN00125 150 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGT-NFVDCLEKFVKDPQTEGIIL 211 (300)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCC-CHHHHHHHHhhCCCCcEEEE
Confidence 7999999999999999999999999888889999998 764 46788999999999999864
No 284
>PLN02522 ATP citrate (pro-S)-lyase
Probab=62.63 E-value=13 Score=45.62 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=67.2
Q ss_pred CCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCH-HHHHHHHHHHhhcCCeEEEEEccccc-cCcccccchhhh
Q psy3769 261 NGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATI-KTITEAFKIMMQQNNLKTILVNIFGI-TGKTGRFHTNLC 338 (974)
Q Consensus 261 ~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~-~~v~~a~~~il~~~~~~~i~vni~G~-~~k~G~~v~~~l 338 (974)
.|+||++.-.++|+...+|.+...|=--.-+.-+||.+.. .++.+.++.+..||++++|+ ++|. ..+.+...++.+
T Consensus 167 pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~Iv--lygEiGg~~e~~f~ea~ 244 (608)
T PLN02522 167 PGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIV--VLGELGGRDEYSLVEAL 244 (608)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEE--EEEecCchhHHHHHHHH
Confidence 7999999999999999999999999778888999998752 44677899999999999985 4553 456666777777
Q ss_pred hccCCCCc
Q psy3769 339 LNYGNGKK 346 (974)
Q Consensus 339 ~~~g~~g~ 346 (974)
.+...+.|
T Consensus 245 ~~a~~~KP 252 (608)
T PLN02522 245 KQGKVSKP 252 (608)
T ss_pred HHhcCCCC
Confidence 66455554
No 285
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=62.54 E-value=16 Score=27.66 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHH
Q psy3769 4 YEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKK 37 (974)
Q Consensus 4 ~E~~ak~lL~~~GIpvp~~~~~~s~eea~~~a~~ 37 (974)
++.+-|+.|.+|||++|+.. .+-+|..+.+++
T Consensus 5 s~~~L~~wL~~~gi~~~~~~--~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA--KTRDELLKLAKK 36 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHH
Confidence 56788999999999999877 678888877764
No 286
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=62.33 E-value=28 Score=34.26 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=59.8
Q ss_pred eEEEEEccccccCcccccchhhhh-ccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEec----chh
Q psy3769 316 LKTILVNIFGITGKTGRFHTNLCL-NYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVP----AIF 390 (974)
Q Consensus 316 ~~~i~vni~G~~~k~G~~v~~~l~-~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp----~~~ 390 (974)
.|+++-|+-|.-...|..++..++ ..||+ +++. .... +.=..++.+. ++.+|++.++.- .+.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~Gfe---Vi~l-g~~~--------s~e~~v~aa~-e~~adii~iSsl~~~~~~~ 69 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFD---VDVG-PLFQ--------TPEEIARQAV-EADVHVVGVSSLAGGHLTL 69 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcE---EEEC-CCCC--------CHHHHHHHHH-HcCCCEEEEcCchhhhHHH
Confidence 455544554444456666666655 66887 2321 1110 0111233333 358999998863 345
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCC-ChHHHHHHHHHHhcCCCCc-eEEccCC
Q psy3769 391 ATSAIWEAIESELELVICITEGI-PVRDMLILKNKMKKNNSKT-LLLGPNC 439 (974)
Q Consensus 391 v~~~v~e~~~~gv~~~vi~s~G~-~e~~~~~l~~~a~~~~~gi-~viGPnc 439 (974)
++++++++.++|.+.+.++.+|. +.++.++ .+ +.|+ ++++|.+
T Consensus 70 ~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~----l~--~~Gvd~~~~~gt 114 (132)
T TIGR00640 70 VPALRKELDKLGRPDILVVVGGVIPPQDFDE----LK--EMGVAEIFGPGT 114 (132)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCChHhHHH----HH--HCCCCEEECCCC
Confidence 67777888777875556666764 4433332 44 6787 6888876
No 287
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=62.12 E-value=26 Score=39.30 Aligned_cols=124 Identities=22% Similarity=0.225 Sum_probs=67.2
Q ss_pred cccccccchhhhcccCCCcEEEEEecc------hhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 362 EEIPIFDTVKNAKNETGATVSVIYVPA------IFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 362 ~G~~~y~sl~dip~~~~vDlavi~vp~------~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
.|+|.|.|++++.. .+|..++-+.+ +...+.+.+|+++|..- +-.-.....+..++.+.|+ ++|.++.
T Consensus 18 ~~iPi~~~~~~a~~--~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~I--vsGLH~~L~ddpel~~~A~--~~g~~i~ 91 (301)
T PF07755_consen 18 RGIPIVASLEEAAA--GADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDI--VSGLHDFLSDDPELAAAAK--KNGVRII 91 (301)
T ss_dssp S--BEESSHHHHHC--T-SEEEE---STTHCCHCCHHHHHHHHHHTT-EE--EE-SSS-HCCHHHHHCCHH--CCT--EE
T ss_pred CCCCccCCHHHHhc--CCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCE--EecChhhhccCHHHHHHHH--HcCCeEe
Confidence 78999999999943 89999887633 33558999999999773 3222233344567889999 9999888
Q ss_pred ccCCccccccCccccccCCCCCCCCCCEEEEeCChhhH-----HHHHHHHHHcCCceEEEeecCCC
Q psy3769 436 GPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSGTLT-----YEVVCQLTELGFGQSSAVGIGGD 496 (974)
Q Consensus 436 GPnc~G~~~~~~~~~~~~~~~~~~~G~va~vSQSG~~~-----~~~~~~~~~~g~g~s~~vs~Gn~ 496 (974)
--... +.....++-.......=.|..+..+-+++ .++...++++|+. +.|++||..
T Consensus 92 DvR~p----~~~~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~-a~fvaTGQT 152 (301)
T PF07755_consen 92 DVRKP----PKDLPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGIN-AGFVATGQT 152 (301)
T ss_dssp ETTS------SS-----SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EEEEE-SHH
T ss_pred eccCC----CcccccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCC-ceEEecCCc
Confidence 65544 00000010000111222477777665554 3455677788885 567888864
No 288
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=62.11 E-value=16 Score=41.37 Aligned_cols=80 Identities=18% Similarity=0.086 Sum_probs=55.1
Q ss_pred ccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES 401 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~ 401 (974)
.|+|.++-.|..+++-|.++..- .+.-+..+. +..+ ...++... .+|++++++|.....+.+.++.+.
T Consensus 6 aIvGAtGy~G~eLlrlL~~hp~~---~l~~~~s~~-~~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~ 73 (313)
T PRK11863 6 FIDGEAGTTGLQIRERLAGRSDI---ELLSIPEAK-RKDA------AARRELLN--AADVAILCLPDDAAREAVALIDNP 73 (313)
T ss_pred EEECCCCHHHHHHHHHHhcCCCe---EEEEEecCC-CCcc------cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhC
Confidence 35799998999999888877643 344444332 1221 22223323 689999999999999999999998
Q ss_pred CCcEEEEEcCCCC
Q psy3769 402 ELELVICITEGIP 414 (974)
Q Consensus 402 gv~~~vi~s~G~~ 414 (974)
|++ +|=+|+.|.
T Consensus 74 g~~-VIDlSadfR 85 (313)
T PRK11863 74 ATR-VIDASTAHR 85 (313)
T ss_pred CCE-EEECChhhh
Confidence 887 455666553
No 289
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=61.86 E-value=24 Score=34.01 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=54.4
Q ss_pred Ccccccchhhhh-ccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecc----hhHHHHHHHHHHcC
Q psy3769 328 GKTGRFHTNLCL-NYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPA----IFATSAIWEAIESE 402 (974)
Q Consensus 328 ~k~G~~v~~~l~-~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~----~~v~~~v~e~~~~g 402 (974)
...|..++..++ ..||+ .++ ..+. +|.-..++.+- +..+|++.++... +.+++.++++.+.|
T Consensus 12 H~lG~~~~~~~l~~~G~~---vi~-lG~~--------vp~e~~~~~a~-~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 12 HDRGAKVIARALRDAGFE---VIY-TGLR--------QTPEEIVEAAI-QEDVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred hHHHHHHHHHHHHHCCCE---EEE-CCCC--------CCHHHHHHHHH-HcCCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 346666666555 67887 232 2222 22323333333 3589999999744 34555666666777
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhcCCCCc-eEEccCCc
Q psy3769 403 LELVICITEGIPVRDMLILKNKMKKNNSKT-LLLGPNCP 440 (974)
Q Consensus 403 v~~~vi~s~G~~e~~~~~l~~~a~~~~~gi-~viGPnc~ 440 (974)
.+.+.++.+|-...+.. +..+ +.|+ .+++|+|.
T Consensus 79 ~~~i~i~~GG~~~~~~~---~~~~--~~G~d~~~~~~~~ 112 (122)
T cd02071 79 AGDILVVGGGIIPPEDY---ELLK--EMGVAEIFGPGTS 112 (122)
T ss_pred CCCCEEEEECCCCHHHH---HHHH--HCCCCEEECCCCC
Confidence 75556666664333222 4445 6787 68888874
No 290
>KOG0887|consensus
Probab=61.77 E-value=12 Score=34.77 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=29.6
Q ss_pred EEeCCEEEEEecCCCCHHHHHhhcCCE-EEEeCCC
Q psy3769 896 KNHGNYVLANLYGITDRNLATKLQGYY-LKISIND 929 (974)
Q Consensus 896 r~~~~~~lvkf~gi~~re~Ae~L~g~~-l~v~~~~ 929 (974)
+.+.+..++|+||++++|+|+-+.|.. +|+-++.
T Consensus 26 ~~~~~t~llkIEGv~skeEa~fYlGkR~~yvYKa~ 60 (111)
T KOG0887|consen 26 NQHPNTSLLKIEGVYSKEEASFYLGKRCVYVYKAK 60 (111)
T ss_pred ccCCCcEEEEEecccchhhhheeecCcEEEEEecC
Confidence 345677899999999999999999998 7888877
No 291
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=61.54 E-value=10 Score=42.66 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=58.6
Q ss_pred cccccCcccccchhhhhcc-CCCCceEEEEecCCCCC---cccccccc-ccchhhhccc---CCCcEEEEEecchhHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNY-GNGKKAFVAGVNPKKNG---QKFEEIPI-FDTVKNAKNE---TGATVSVIYVPAIFATSA 394 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~-g~~g~~~V~pVnP~~~g---~~i~G~~~-y~sl~dip~~---~~vDlavi~vp~~~v~~~ 394 (974)
|+| ++..|..++..+.+. +++- .-++..+|...+ .+-.|++. |.+++++.+. .++|++++++|+....+.
T Consensus 9 IIG-tG~IGt~hm~~l~~~~~vel-vAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~ 86 (302)
T PRK08300 9 IIG-SGNIGTDLMIKILRSEHLEP-GAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHVRH 86 (302)
T ss_pred EEc-CcHHHHHHHHHHhcCCCcEE-EEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHHHH
Confidence 467 667777767666653 2331 012334554211 13358886 5889988754 479999999999999999
Q ss_pred HHHHHHcCCcEEEEEcCC
Q psy3769 395 IWEAIESELELVICITEG 412 (974)
Q Consensus 395 v~e~~~~gv~~~vi~s~G 412 (974)
...|.++|+. ++..++-
T Consensus 87 a~~a~eaGk~-VID~sPA 103 (302)
T PRK08300 87 AAKLREAGIR-AIDLTPA 103 (302)
T ss_pred HHHHHHcCCe-EEECCcc
Confidence 9999999965 4665543
No 292
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=61.48 E-value=9 Score=36.37 Aligned_cols=71 Identities=10% Similarity=0.089 Sum_probs=49.9
Q ss_pred cccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCC-CC-hHHHHHHHHHHhcCCCCceEE
Q psy3769 362 EEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEG-IP-VRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 362 ~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G-~~-e~~~~~l~~~a~~~~~gi~vi 435 (974)
.+...+.+++++.+..++|++|=+.+++.+.+.+.+++++|+. +|..+-+ ++ .....+|.+.|+ ++|.++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~-VVt~nk~ala~~~~~~~L~~~A~--~~g~~~~ 115 (117)
T PF03447_consen 43 PDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKH-VVTANKGALADEALYEELREAAR--KNGVRIY 115 (117)
T ss_dssp THSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCE-EEES-HHHHHSHHHHHHHHHHHH--HHT-EEE
T ss_pred ccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCe-EEEECHHHhhhHHHHHHHHHHHH--HcCCEEE
Confidence 3556778888886544799999999999999999999999977 3444432 22 123467899999 8888764
No 293
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=61.05 E-value=12 Score=41.65 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=56.9
Q ss_pred cccccCcccccchhhhhcc-CCCCceEEEEecCCCCC---cccccccc-ccchhhhcccCCCcEEEEEecchhHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNY-GNGKKAFVAGVNPKKNG---QKFEEIPI-FDTVKNAKNETGATVSVIYVPAIFATSAIWE 397 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~-g~~g~~~V~pVnP~~~g---~~i~G~~~-y~sl~dip~~~~vDlavi~vp~~~v~~~v~e 397 (974)
|+| ++..|..++.++++. +++- ..++..+|...+ .+-.|++. |.+.+++.+..++|++++++|...-.+...+
T Consensus 6 IIG-~G~IG~~h~~~ll~~~~~el-vaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a~~ 83 (285)
T TIGR03215 6 IIG-SGNIGTDLMYKLLRSEHLEM-VAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHARL 83 (285)
T ss_pred EEe-CcHHHHHHHHHHHhCCCcEE-EEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHHHH
Confidence 456 366777776666643 3441 123444665312 22357775 5588887654579999999999999999999
Q ss_pred HHHcCCcEEEEEcC
Q psy3769 398 AIESELELVICITE 411 (974)
Q Consensus 398 ~~~~gv~~~vi~s~ 411 (974)
|.++|.. ++..++
T Consensus 84 al~aGk~-VIdekP 96 (285)
T TIGR03215 84 LAELGKI-VIDLTP 96 (285)
T ss_pred HHHcCCE-EEECCc
Confidence 9999965 455443
No 294
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=60.92 E-value=9.6 Score=36.53 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=26.0
Q ss_pred eCCEEEEEecCCCCHHHHHhhcCCEEEE-eCC
Q psy3769 898 HGNYVLANLYGITDRNLATKLQGYYLKI-SIN 928 (974)
Q Consensus 898 ~~~~~lvkf~gi~~re~Ae~L~g~~l~v-~~~ 928 (974)
+.+..|+|+||++|+|+|+-+.|..+.. .+.
T Consensus 37 ~~~~aLlKieGV~~~~~a~fYlGKrvayvyka 68 (120)
T PTZ00041 37 YPNVALLKIEGVNTREDARFYLGKRVAYVYKA 68 (120)
T ss_pred CCceEEEEecCcCChhhhHhhccceEEEEEcC
Confidence 4578899999999999999999998754 443
No 295
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=60.30 E-value=27 Score=35.90 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=86.2
Q ss_pred hhhcChhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcccCCc
Q psy3769 591 DILLGSTDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLLNL---KYIKIIGGFLLFWISIKLLSNDHNY 667 (974)
Q Consensus 591 e~~Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll~~---~~~~~~gg~~Ll~~~~~~~~~~~~~ 667 (974)
-..-+.|.++...+.+.+...+.++.-+..|-.-.-+.=++.-.+..+.+++ .|+.=+.|++=+|+++|.+...+++
T Consensus 12 y~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~d~d 91 (205)
T COG4300 12 YIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLILGDDD 91 (205)
T ss_pred HHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHHHHHHHhhCcHHHHHHHHhHHHHHHhhHHhhcccCc
Confidence 3444568888888888877767777777777554433333333333334433 3766456889999999988643322
Q ss_pred cc--------ccCCCcHHHHHHHHHHHHHhhhhchH----HHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHH--
Q psy3769 668 TT--------IASGKNLIHAIKTIIFADLIMSIDNV----LAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVL-- 733 (974)
Q Consensus 668 ~~--------~~~~~~~~~~v~~I~~~D~~fs~Dsv----~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~-- 733 (974)
++ .+..+++...|..+-+|. -.=||| |-=+..+ -.|..+.+.-..+-|.++.+.++.++
T Consensus 92 ~e~~~~e~L~~~~~k~lv~tV~~vT~As--cG~DNIgvyvP~F~tl~-----~~~llv~l~vF~v~I~iL~~~a~~la~i 164 (205)
T COG4300 92 GEEEAKEELAFKKNKNLVGTVAIVTFAS--CGADNIGVFVPYFATLN-----LANLLVALLVFLVMIYILVFLAQKLAQI 164 (205)
T ss_pred CchhhhHHHHhccccceEEEEEEEEEec--cCCcceEEEeeeeeccc-----HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 112233322222221111 011222 0000111 11344444445555666667777665
Q ss_pred ----HHHHhhhhHHHHHHHHHHHHHHHhhhcccchhh
Q psy3769 734 ----ILIEKFSSIIILCSILLGYLSGNMIFSDQSLTQ 766 (974)
Q Consensus 734 ----~~~~~~~~l~~~~~~~l~~ig~~l~~~~~~~~~ 766 (974)
+.+|||.. +....++.-.|.-.+.|...++.
T Consensus 165 p~I~evlEk~sr--~i~~~V~I~LGlfIl~E~gtf~~ 199 (205)
T COG4300 165 PPIGEVLEKYSR--WIVAFVYIGLGLFILYENGTFSL 199 (205)
T ss_pred CcHHHHHHHHHH--HHHHHHHHHhhheeEEeCCchhh
Confidence 47777764 34445555566666666655543
No 296
>PRK06349 homoserine dehydrogenase; Provisional
Probab=59.84 E-value=16 Score=43.11 Aligned_cols=70 Identities=14% Similarity=0.074 Sum_probs=49.4
Q ss_pred ccccccchhhhcccCCCcEEEEEecc-hhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPA-IFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
+...|.+.+++....++|+++.+++. +...+.+++|+++| |+++.-....--....+|.+.|+ ++|+.+.
T Consensus 57 ~~~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~G-khVVtaNK~~~a~~~~eL~~lA~--~~gv~l~ 127 (426)
T PRK06349 57 GILLTTDPEELVNDPDIDIVVELMGGIEPARELILKALEAG-KHVVTANKALLAVHGAELFAAAE--EKGVDLY 127 (426)
T ss_pred ccceeCCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCC-CeEEEcCHHHHHHHHHHHHHHHH--HcCCcEE
Confidence 45577888888754579999999865 45578999999999 45443222211123478999999 8998766
No 297
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=59.44 E-value=9.2 Score=44.40 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=45.7
Q ss_pred ccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 367 FDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 367 y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
..+++++-+ ..|++|-++|+.....+++.|++.|+..+= ..+..+...++.+.|+ ++|+.++
T Consensus 58 ~~~l~~~~~--~~dvVin~~gp~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~--~~g~~~l 119 (386)
T PF03435_consen 58 PESLAELLR--GCDVVINCAGPFFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAK--EAGVTAL 119 (386)
T ss_dssp HHHHHHHHT--TSSEEEE-SSGGGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHH--HTTSEEE
T ss_pred HHHHHHHHh--cCCEEEECCccchhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHH--hhCCEEE
Confidence 355777765 679999999999999999999999998733 3333344566778888 8898877
No 298
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=58.92 E-value=18 Score=40.76 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=47.0
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIE 400 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~ 400 (974)
|+| .+.+|..+.+++.+.|++ |..+|+.. . .+++++.+ ..|++++++|...+.+++++...
T Consensus 9 iiG-~G~~G~~lA~~l~~~G~~----V~~~~r~~--~--------~~~~~~~~--~advvi~~vp~~~~~~v~~~l~~ 69 (308)
T PRK14619 9 ILG-AGAWGSTLAGLASANGHR----VRVWSRRS--G--------LSLAAVLA--DADVIVSAVSMKGVRPVAEQVQA 69 (308)
T ss_pred EEC-ccHHHHHHHHHHHHCCCE----EEEEeCCC--C--------CCHHHHHh--cCCEEEEECChHHHHHHHHHHHH
Confidence 456 467888888899888876 66777664 1 46777765 78999999999988888877654
No 299
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=58.71 E-value=20 Score=40.53 Aligned_cols=206 Identities=13% Similarity=0.082 Sum_probs=107.7
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcC
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESE 402 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~g 402 (974)
|.|.+|-.|..+++.|..+..- .+.-+..+. . . .. .+.+++.+ .+|++++++|.+...+.+.++.++|
T Consensus 6 IvGasGy~G~el~rlL~~HP~~---el~~l~s~~--~-~---~~-~~~~~~~~--~~D~vFlalp~~~s~~~~~~~~~~g 73 (310)
T TIGR01851 6 IDGEAGTTGLQIRERLSGRDDI---ELLSIAPDR--R-K---DA-AERAKLLN--AADVAILCLPDDAAREAVSLVDNPN 73 (310)
T ss_pred EECCCChhHHHHHHHHhCCCCe---EEEEEeccc--c-c---Cc-CCHhHhhc--CCCEEEECCCHHHHHHHHHHHHhCC
Confidence 5788888899999888877643 355554442 1 1 01 13344433 6999999999999999999998888
Q ss_pred CcEEEEEcCCCChHH-----HHHH----HHHHhcCCCCceEEccCCccccccCccccccCCCCCC-CCCCEEEEeCCh--
Q psy3769 403 LELVICITEGIPVRD-----MLIL----KNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIH-KKGRIGVVSRSG-- 470 (974)
Q Consensus 403 v~~~vi~s~G~~e~~-----~~~l----~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~-~~G~va~vSQSG-- 470 (974)
++ +|=+|+.|.-.+ .-|+ ++..+ +. -.|--|+|.-....- .+......... +...+.+-+-||
T Consensus 74 ~~-VIDlSadfRl~~~~~yglPEln~~~~~~i~--~a-~lIAnPgC~aTa~~L-aL~PL~~~~li~~~~~~~~~a~SG~S 148 (310)
T TIGR01851 74 TC-IIDASTAYRTADDWAYGFPELAPGQREKIR--NS-KRIANPGCYPTGFIA-LMRPLVEAGILPADFPITINAVSGYS 148 (310)
T ss_pred CE-EEECChHHhCCCCCeEEccccCHHHHHhhc--cC-CEEECCCCHHHHHHH-HHHHHHHcCCccccceEEEEeccccC
Confidence 87 455665443221 0011 12222 22 267789996322110 00000000111 122477777776
Q ss_pred hhHHHHHHHHHHcCCc------eEEEeecCCCCCCCCCHHHHHHHhhhC----------CCccEEE--EEEcc---C-CC
Q psy3769 471 TLTYEVVCQLTELGFG------QSSAVGIGGDPINGLKYIDILKLFNED----------QNTDAVI--MIGEI---G-GL 528 (974)
Q Consensus 471 ~~~~~~~~~~~~~g~g------~s~~vs~Gn~a~~dv~~~d~l~~l~~D----------p~t~~I~--ly~E~---~-g~ 528 (974)
+-+......... ..+ =-+.-++|.. .--.+|+.+++... |-+|.|+ +|++. - +.
T Consensus 149 GAGr~~~~~l~~-q~~~~e~~~~~~~Y~~~~~---HrH~pEi~q~l~~~~~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~ 224 (310)
T TIGR01851 149 GGGKAMIADYEQ-GSADNPSLQPFRIYGLALT---HKHLPEMRVHSGLALPPIFTPAVGNFAQGMAVTIPLHLQTLASKV 224 (310)
T ss_pred ccChhhhHHhhh-cccchhhccCceeccCCCC---CCcHHHHHHHhCCCCCEEEEeEEccccCcEEEEEEEEeccCCCCC
Confidence 123332222221 111 1224444411 23477888888542 3334443 56553 1 11
Q ss_pred chHHHHHHHHh-cCCCCEEEEe
Q psy3769 529 DEIYAANWIKK-NMKKPVIGFI 549 (974)
Q Consensus 529 ~~~~~~~f~~~-~~~KPVv~lk 549 (974)
.+.+..+.++. -++.|-|=+.
T Consensus 225 ~~~~~~~~~~~~Y~~epfVrv~ 246 (310)
T TIGR01851 225 SPADIHAALADYYQGEQFVRVA 246 (310)
T ss_pred CHHHHHHHHHHHHCCCCcEEEe
Confidence 22455555554 6778888665
No 300
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=58.58 E-value=20 Score=39.37 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=51.5
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEe-cCCCCC-ccccccc-cccchh---hhcc---c-CC-CcEEEEEecc---
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGV-NPKKNG-QKFEEIP-IFDTVK---NAKN---E-TG-ATVSVIYVPA--- 388 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pV-nP~~~g-~~i~G~~-~y~sl~---dip~---~-~~-vDlavi~vp~--- 388 (974)
|.|.|+..|..+++.|++.|++ +...+ +|.... ..+..++ -|.+.+ ++-. . .. +|.++.+.|.
T Consensus 4 VtGatG~iG~~vv~~L~~~g~~---V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~ 80 (285)
T TIGR03649 4 LTGGTGKTASRIARLLQAASVP---FLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD 80 (285)
T ss_pred EEcCCChHHHHHHHHHHhCCCc---EEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCC
Confidence 5799999999999999998987 33333 332100 1111111 122222 2220 0 14 7887777663
Q ss_pred --hhHHHHHHHHHHcCCcEEEEEcC
Q psy3769 389 --IFATSAIWEAIESELELVICITE 411 (974)
Q Consensus 389 --~~v~~~v~e~~~~gv~~~vi~s~ 411 (974)
.....+++.|.+.|++.+|.+|+
T Consensus 81 ~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 81 LAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEeec
Confidence 34556788888899999777764
No 301
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=58.28 E-value=10 Score=43.39 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=50.7
Q ss_pred ccccccCcccccchhhhhccCCCCceEEEEe-cCCCCCcccc--cc-ccccchh--hhcccCCCcEEEEEecchhHHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKKAFVAGV-NPKKNGQKFE--EI-PIFDTVK--NAKNETGATVSVIYVPAIFATSAI 395 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~~~V~pV-nP~~~g~~i~--G~-~~y~sl~--dip~~~~vDlavi~vp~~~v~~~v 395 (974)
.|+|.++..|..+++.|.+.+++-- .+..+ ..+..|+.+. |. ..+.+++ ++ . .+|++++++|.....+.+
T Consensus 3 aIvGAtG~vG~eLi~lL~~~~hp~~-~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~-~--~~D~v~~a~g~~~s~~~a 78 (339)
T TIGR01296 3 AIVGATGAVGQEMLKILEERNFPID-KLVLLASDRSAGRKVTFKGKELEVNEAKIESF-E--GIDIALFSAGGSVSKEFA 78 (339)
T ss_pred EEEcCCCHHHHHHHHHHHhCCCChh-hEEEEeccccCCCeeeeCCeeEEEEeCChHHh-c--CCCEEEECCCHHHHHHHH
Confidence 3579999999999998888666521 22222 2222233332 21 1122222 22 2 789999999999999999
Q ss_pred HHHHHcCCc
Q psy3769 396 WEAIESELE 404 (974)
Q Consensus 396 ~e~~~~gv~ 404 (974)
.++.++|++
T Consensus 79 ~~~~~~G~~ 87 (339)
T TIGR01296 79 PKAAKCGAI 87 (339)
T ss_pred HHHHHCCCE
Confidence 999999974
No 302
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=57.83 E-value=54 Score=36.05 Aligned_cols=97 Identities=16% Similarity=0.068 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCeEEEEEcccccc--------CcccccchhhhhccCCCCceEEEEecCCCCCccccccccc
Q psy3769 296 GGATIKTITEAFKIMMQQNNLKTILVNIFGIT--------GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIF 367 (974)
Q Consensus 296 G~a~~~~v~~a~~~il~~~~~~~i~vni~G~~--------~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y 367 (974)
...-..++..|++.+.+..+.++.|+.-.|.. ...+...+.+.++..|+ |.++|+.
T Consensus 127 ~~~~E~~lt~aI~~v~~~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~y~----V~~~~l~------------ 190 (271)
T PF09822_consen 127 EFNLEYELTSAIRRVTSDEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKNYD----VEELNLA------------ 190 (271)
T ss_pred cccHHHHHHHHHHHHhcccCceEEEEccccccccccccccCcchHHHHHHHHHhcCc----eeecCCc------------
Confidence 44556789999999999878888877666633 33555666666654576 6677665
Q ss_pred cchhhhcccCCCcEEEEEecch-h---HHHHHHHHHHcCCcEEEEEcCC
Q psy3769 368 DTVKNAKNETGATVSVIYVPAI-F---ATSAIWEAIESELELVICITEG 412 (974)
Q Consensus 368 ~sl~dip~~~~vDlavi~vp~~-~---v~~~v~e~~~~gv~~~vi~s~G 412 (974)
..++|+ .+|+++|+-|.. . -..++++-+.+|=+..+++...
T Consensus 191 --~~~IP~--~~d~Lvi~~P~~~ls~~e~~~l~~yl~~GG~ll~~~d~~ 235 (271)
T PF09822_consen 191 --NEEIPD--DADVLVIAGPKTDLSEEELYALDQYLMNGGKLLILLDPF 235 (271)
T ss_pred --ccccCC--CCCEEEEECCCCCCCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 235676 899999998887 2 3457888888998865554444
No 303
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=57.67 E-value=22 Score=40.12 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=56.2
Q ss_pred CCCceeeCCHHHHHHHHHHc-CCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccCCCCCceeEEE
Q psy3769 19 IPKGILCMNVDEAIKAAKKI-GGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVL 97 (974)
Q Consensus 19 vp~~~~~~s~eea~~~a~~i-g~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~~~~~vL 97 (974)
|-++..+.|.++|..+++.+ ...||=+|+--..||||. .++.|.+++..+...+-...+ .-.++.
T Consensus 114 vL~G~tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ----~vv~~~~~Ld~~L~~~~~~~l----------~~~GlV 179 (355)
T PF11379_consen 114 VLPGYTVFSREDARRAARRLLRDGPVRLKPVHATGGRGQ----QVVADADELDAALAALDDAEL----------ARHGLV 179 (355)
T ss_pred ccCCccccCHHHHHHHHHHHhccCCeeeccCcccCCCCc----eEecCHHHHHHHHHcCCHHHH----------HhCCEE
Confidence 55777888999999998876 225999999767788854 578999999998877654433 124667
Q ss_pred EEEEeccceeEEEE
Q psy3769 98 IEEYIDIKKELYIS 111 (974)
Q Consensus 98 Vee~v~~~~E~ylg 111 (974)
+|+-+..-.-+.||
T Consensus 180 LE~~L~~~~T~SVG 193 (355)
T PF11379_consen 180 LEEDLEEVVTYSVG 193 (355)
T ss_pred EecccCCCceeeEE
Confidence 77766544444444
No 304
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=57.63 E-value=26 Score=38.44 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=50.4
Q ss_pred hhhhccCCCCceEEEEecCCCCCccc-----ccc--ccccchhhhcccCCCcEEEEEecchhHHHHHHHHHH-cCCcEEE
Q psy3769 336 NLCLNYGNGKKAFVAGVNPKKNGQKF-----EEI--PIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIE-SELELVI 407 (974)
Q Consensus 336 ~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~--~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~-~gv~~~v 407 (974)
+.|.+.|+.. .|+.++++. ... .|+ ..+.+.+.+ . ..|++|+|+|.+.+.+++++... ..-..+|
T Consensus 3 ~aL~~~g~~~--~v~g~d~~~--~~~~~a~~~g~~~~~~~~~~~~-~--~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv 75 (258)
T PF02153_consen 3 LALRKAGPDV--EVYGYDRDP--ETLEAALELGIIDEASTDIEAV-E--DADLVVLAVPVSAIEDVLEEIAPYLKPGAIV 75 (258)
T ss_dssp HHHHHTTTTS--EEEEE-SSH--HHHHHHHHTTSSSEEESHHHHG-G--CCSEEEE-S-HHHHHHHHHHHHCGS-TTSEE
T ss_pred HHHHhCCCCe--EEEEEeCCH--HHHHHHHHCCCeeeccCCHhHh-c--CCCEEEEcCCHHHHHHHHHHhhhhcCCCcEE
Confidence 3566777665 788888875 321 232 233333344 3 68999999999999999999987 4445544
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCCceEEc
Q psy3769 408 CITEGIPVRDMLILKNKMKKNNSKTLLLG 436 (974)
Q Consensus 408 i~s~G~~e~~~~~l~~~a~~~~~gi~viG 436 (974)
.=.++....-.+.+.+.. ..+.+++|
T Consensus 76 ~Dv~SvK~~~~~~~~~~~---~~~~~~v~ 101 (258)
T PF02153_consen 76 TDVGSVKAPIVEAMERLL---PEGVRFVG 101 (258)
T ss_dssp EE--S-CHHHHHHHHHHH---TSSGEEEE
T ss_pred EEeCCCCHHHHHHHHHhc---Ccccceee
Confidence 444555543333333322 34556553
No 305
>PLN02858 fructose-bisphosphate aldolase
Probab=56.43 E-value=25 Score=47.71 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=67.8
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCcc---ccccccccchhhhcccCCCcEEEEEecchhH-HHHH---H
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK---FEEIPIFDTVKNAKNETGATVSVIYVPAIFA-TSAI---W 396 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~---i~G~~~y~sl~dip~~~~vDlavi~vp~~~v-~~~v---~ 396 (974)
+| .+.+|..+.++|++.||+ |+..|......+ -.|.....|.+|+.+ ..|++++++|.... .+++ +
T Consensus 10 IG-LG~MG~~mA~~L~~~G~~----v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~--~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 10 VG-LDSLSFELASSLLRSGFK----VQAFEISTPLMEKFCELGGHRCDSPAEAAK--DAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred Ec-hhHHHHHHHHHHHHCCCe----EEEEcCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEEcCChHHHHHHHhchh
Confidence 44 356788889999999998 444454430011 137788899999977 89999999987544 4444 2
Q ss_pred HHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCC--ceEE-ccCCcc
Q psy3769 397 EAIES-ELELVICITEGIPVRDMLILKNKMKKNNSK--TLLL-GPNCPG 441 (974)
Q Consensus 397 e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~g--i~vi-GPnc~G 441 (974)
.+.+. .-+.+++-.+-...+..+++.+.++ ++| ++++ .|=+-|
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~--~~g~~~~~lDaPVsGg 129 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLT--ERKEQIFLVDAYVSKG 129 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHH--hcCCceEEEEccCcCC
Confidence 23332 1223445444455455667777777 777 7755 444333
No 306
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=56.05 E-value=26 Score=40.02 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=53.8
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCcccc--cc-ccccchhhhcccCCCcEEEEEecchhHHHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFE--EI-PIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI 399 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~--G~-~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~ 399 (974)
|+|.++..|..+++.|.+.+++--...+.+..+..|+++. |. ..+.++++..- ..+|+++.++|.....+.+....
T Consensus 6 IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~-~~vDvVf~A~g~g~s~~~~~~~~ 84 (334)
T PRK14874 6 VVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDF-SGVDIALFSAGGSVSKKYAPKAA 84 (334)
T ss_pred EECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHH-cCCCEEEECCChHHHHHHHHHHH
Confidence 5799999999999988886665210233333333234332 21 11122221110 26999999999999999999999
Q ss_pred HcCCcEEEEEcCCC
Q psy3769 400 ESELELVICITEGI 413 (974)
Q Consensus 400 ~~gv~~~vi~s~G~ 413 (974)
++|++ +|=+|+.|
T Consensus 85 ~~G~~-VIDlS~~~ 97 (334)
T PRK14874 85 AAGAV-VIDNSSAF 97 (334)
T ss_pred hCCCE-EEECCchh
Confidence 98872 23234444
No 307
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=56.00 E-value=23 Score=41.66 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=52.4
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc------------------------cc-cccccchhhhcccC
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF------------------------EE-IPIFDTVKNAKNET 377 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i------------------------~G-~~~y~sl~dip~~~ 377 (974)
++| .|..|..+...+.+.|++ |+.++++. +.+ .| +....+.+++.+
T Consensus 5 vIG-lG~~G~~lA~~La~~G~~----V~~~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~-- 75 (411)
T TIGR03026 5 VIG-LGYVGLPLAALLADLGHE----VTGVDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR-- 75 (411)
T ss_pred EEC-CCchhHHHHHHHHhcCCe----EEEEECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--
Confidence 345 345666666677777776 44454432 111 13 445566776554
Q ss_pred CCcEEEEEecch----------hHHHHHHHHHHc-CCcEEEEEcCCCChHHHHHHH
Q psy3769 378 GATVSVIYVPAI----------FATSAIWEAIES-ELELVICITEGIPVRDMLILK 422 (974)
Q Consensus 378 ~vDlavi~vp~~----------~v~~~v~e~~~~-gv~~~vi~s~G~~e~~~~~l~ 422 (974)
..|++++++|.. .+.+++++..+. .-+.+++..+..+....+++.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 789999999965 366666665542 223456666666544334443
No 308
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=55.34 E-value=31 Score=39.04 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=36.4
Q ss_pred cccccchhhhcccCCCcEEEEEecchhHHHHHHHHHH-c-C-CcEEEEEcCCCCh
Q psy3769 364 IPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIE-S-E-LELVICITEGIPV 415 (974)
Q Consensus 364 ~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~-~-g-v~~~vi~s~G~~e 415 (974)
++.+.+.++... .+.|++++++|+..+.+++++... . + -..+++++.|+..
T Consensus 58 i~~~~~~~~~~~-~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 58 ISVKSAIDEVLS-DNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred eEEeCCHHHHHh-CCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 345556665531 268999999999999999999875 3 2 2246778888854
No 309
>PRK07574 formate dehydrogenase; Provisional
Probab=55.32 E-value=90 Score=36.49 Aligned_cols=97 Identities=6% Similarity=-0.033 Sum_probs=60.3
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCcc---ccccccccchhhhcccCCCcEEEEEecchh-HHHHHHH-HHH-c
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK---FEEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAIWE-AIE-S 401 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~---i~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~e-~~~-~ 401 (974)
+..|..+.+.+..+|++ |+.++|.....+ -.|...|.+++++-. ..|++++++|-.. +...+.+ ..+ .
T Consensus 201 G~IG~~vA~~l~~fG~~----V~~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~~~l~~m 274 (385)
T PRK07574 201 GRIGLAVLRRLKPFDVK----LHYTDRHRLPEEVEQELGLTYHVSFDSLVS--VCDVVTIHCPLHPETEHLFDADVLSRM 274 (385)
T ss_pred CHHHHHHHHHHHhCCCE----EEEECCCCCchhhHhhcCceecCCHHHHhh--cCCEEEEcCCCCHHHHHHhCHHHHhcC
Confidence 56888889999888876 777887531111 246666889999976 7899999999533 3444432 222 2
Q ss_pred CCcEEEEEcCC-CChHHHHHHHHHHhcCCCCce
Q psy3769 402 ELELVICITEG-IPVRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 402 gv~~~vi~s~G-~~e~~~~~l~~~a~~~~~gi~ 433 (974)
.-.+ +++..+ -..-++..|.+..+ +..++
T Consensus 275 k~ga-~lIN~aRG~iVDe~AL~~AL~--sG~i~ 304 (385)
T PRK07574 275 KRGS-YLVNTARGKIVDRDAVVRALE--SGHLA 304 (385)
T ss_pred CCCc-EEEECCCCchhhHHHHHHHHH--hCCcc
Confidence 2233 444433 22335566777777 55444
No 310
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=55.21 E-value=21 Score=40.06 Aligned_cols=61 Identities=13% Similarity=0.324 Sum_probs=53.1
Q ss_pred CCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCH-HHHHHHHHHHhhcCCeEEEEE
Q psy3769 261 NGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATI-KTITEAFKIMMQQNNLKTILV 321 (974)
Q Consensus 261 ~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~-~~v~~a~~~il~~~~~~~i~v 321 (974)
.|+|+++.-.++++.+.+|.....|---..|.-+|..+.. -...+.++.+..||++++|.+
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~l 206 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVM 206 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEE
Confidence 7999999999999999999999999888899999988541 345677899999999999854
No 311
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=54.84 E-value=25 Score=37.21 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=38.1
Q ss_pred HHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh----cCCCCEEEEecccC
Q psy3769 503 YIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK----NMKKPVIGFIAGIT 553 (974)
Q Consensus 503 ~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~----~~~KPVv~lk~Grs 553 (974)
+.+.++-+.+||++++|++++.+.|.......++.++ ..+|||+++-.|.+
T Consensus 18 l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a 72 (207)
T TIGR00706 18 FDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVA 72 (207)
T ss_pred HHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence 4566777788999999999999876544444555554 23699999998875
No 312
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=54.49 E-value=3.4e+02 Score=34.93 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEcc-CCcEEEEEEE
Q psy3769 168 SIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINS-KNKIISLDIK 215 (974)
Q Consensus 168 g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~-~g~~~alDak 215 (974)
-++++.+.++.++..++-+.|... .-+| +.+.. +|+++.|.+|
T Consensus 288 ~L~~~~l~~La~l~~~lE~~fg~p--qDIE---Wai~~~~g~l~ILQaR 331 (795)
T PRK06464 288 SLTDEEVLELAKQAVIIEKHYGRP--MDIE---WAKDGDDGKLYIVQAR 331 (795)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC--ceeE---EEEECCCCcEEEEEee
Confidence 467788999999999999998763 2345 56654 5789999998
No 313
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=53.97 E-value=20 Score=38.23 Aligned_cols=85 Identities=18% Similarity=0.077 Sum_probs=51.7
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-------------cccc---cccchhhhcccCCCcEEEEEe
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-------------EEIP---IFDTVKNAKNETGATVSVIYV 386 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-------------~G~~---~y~sl~dip~~~~vDlavi~v 386 (974)
|+|-++.+|..+.+.+.+.|++ |..++++. +.. .|.. ...+..+..+ ..|++++++
T Consensus 5 IIGG~G~mG~ala~~L~~~G~~----V~v~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~--~aDvVilav 76 (219)
T TIGR01915 5 VLGGTGDQGKGLALRLAKAGNK----IIIGSRDL--EKAEEAAAKALEELGHGGSDIKVTGADNAEAAK--RADVVILAV 76 (219)
T ss_pred EEcCCCHHHHHHHHHHHhCCCE----EEEEEcCH--HHHHHHHHHHHhhccccCCCceEEEeChHHHHh--cCCEEEEEC
Confidence 4565567777777888777765 33334332 111 0111 1124455544 689999999
Q ss_pred cchhHHHHHHHHHHc-CCcEEEEEcCCCCh
Q psy3769 387 PAIFATSAIWEAIES-ELELVICITEGIPV 415 (974)
Q Consensus 387 p~~~v~~~v~e~~~~-gv~~~vi~s~G~~e 415 (974)
|+....+++++.... .-+.++-++.|+..
T Consensus 77 p~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 77 PWDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 999999998887542 22555556667653
No 314
>PRK06436 glycerate dehydrogenase; Provisional
Probab=53.81 E-value=31 Score=38.84 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=54.2
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCccccccc-cccchhhhcccCCCcEEEEEecchh-HHHHHH-HHHHcCCc
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIP-IFDTVKNAKNETGATVSVIYVPAIF-ATSAIW-EAIESELE 404 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~-~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~-e~~~~gv~ 404 (974)
|..|..+.+.+..+|++ |+.++|.. .. .|.. .|.+++++-+ ..|++++++|... +...+. +..++=-+
T Consensus 131 G~IG~~vA~~l~afG~~----V~~~~r~~--~~-~~~~~~~~~l~ell~--~aDiv~~~lp~t~~T~~li~~~~l~~mk~ 201 (303)
T PRK06436 131 GGIGRRVALLAKAFGMN----IYAYTRSY--VN-DGISSIYMEPEDIMK--KSDFVLISLPLTDETRGMINSKMLSLFRK 201 (303)
T ss_pred CHHHHHHHHHHHHCCCE----EEEECCCC--cc-cCcccccCCHHHHHh--hCCEEEECCCCCchhhcCcCHHHHhcCCC
Confidence 56788888877777775 78888864 22 3443 4789999976 7899999999643 222222 22222112
Q ss_pred EEEEEcCCC-ChHHHHHHHHHHh
Q psy3769 405 LVICITEGI-PVRDMLILKNKMK 426 (974)
Q Consensus 405 ~~vi~s~G~-~e~~~~~l~~~a~ 426 (974)
.++++.-+- +-.++..|.+..+
T Consensus 202 ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 202 GLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred CeEEEECCCccccCHHHHHHHHH
Confidence 334444332 2234556667776
No 315
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=53.80 E-value=34 Score=38.68 Aligned_cols=99 Identities=10% Similarity=0.036 Sum_probs=58.6
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCcccccccc---ccchhhhcccCCCcEEEEEecchh-HHHHHHH-H
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPI---FDTVKNAKNETGATVSVIYVPAIF-ATSAIWE-A 398 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~---y~sl~dip~~~~vDlavi~vp~~~-v~~~v~e-~ 398 (974)
+| .|+.|..+.+.+..+|++ |+.++|.. +...+... +.+++++.. ..|++++++|... +...+.+ .
T Consensus 142 vG-~G~IG~~vA~~l~afG~~----V~~~~~~~--~~~~~~~~~~~~~~l~e~l~--~aDvvv~~lPlt~~T~~li~~~~ 212 (312)
T PRK15469 142 LG-AGVLGSKVAQSLQTWGFP----LRCWSRSR--KSWPGVQSFAGREELSAFLS--QTRVLINLLPNTPETVGIINQQL 212 (312)
T ss_pred EC-CCHHHHHHHHHHHHCCCE----EEEEeCCC--CCCCCceeecccccHHHHHh--cCCEEEECCCCCHHHHHHhHHHH
Confidence 45 356788889999988886 77788764 33333322 457777766 7899999999643 3444432 2
Q ss_pred HHcCCcEEEEEcCCCC-hHHHHHHHHHHhcCCCCce
Q psy3769 399 IESELELVICITEGIP-VRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 399 ~~~gv~~~vi~s~G~~-e~~~~~l~~~a~~~~~gi~ 433 (974)
.++=-+.++++.-|-. --++..|.+..+ +..++
T Consensus 213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~--~g~i~ 246 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVEDDLLAALD--SGKVK 246 (312)
T ss_pred HhcCCCCcEEEECCCccccCHHHHHHHHh--cCCee
Confidence 2221123455554432 224556667676 55443
No 316
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=52.17 E-value=62 Score=36.77 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=62.0
Q ss_pred ccccchhhhhccCCCCceEEEEecCCCCCc--------cccccccccchhhhcccCCCcEEEEEecchh-HHHHHHHHHH
Q psy3769 330 TGRFHTNLCLNYGNGKKAFVAGVNPKKNGQ--------KFEEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAIWEAIE 400 (974)
Q Consensus 330 ~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~--------~i~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~e~~~ 400 (974)
-|.-+.++|++.||+ |+..|++.... .-.|.+..+|..++.+ ..|++++++|... +.++++...+
T Consensus 31 gGspMArnLlkAGhe----V~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa--~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 31 GGSRMAIEFAMAGHD----VVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK--HGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred CHHHHHHHHHHCCCE----EEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh--CCCEEEEecCCHHHHHHHHHHHHh
Confidence 455677899999997 55554432000 1238888899999976 7999999999876 5566655444
Q ss_pred c-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccC
Q psy3769 401 S-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPE 446 (974)
Q Consensus 401 ~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~ 446 (974)
. .-..++|-++-.+.+...++.+- .+| +|+.-+|+.+.|
T Consensus 105 ~L~~GaIVID~STIsP~t~~~~~e~------~l~-~~r~d~~v~s~H 144 (341)
T TIGR01724 105 HVPENAVICNTCTVSPVVLYYSLEK------ILR-LKRTDVGISSMH 144 (341)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHH------Hhh-cCccccCeeccC
Confidence 3 23345554554443333322221 111 346667776665
No 317
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=51.90 E-value=28 Score=39.87 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=66.7
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCC-CCCcccc--c--cccccchhhhcccCCCcEEEEEecchhHHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPK-KNGQKFE--E--IPIFDTVKNAKNETGATVSVIYVPAIFATSAIWE 397 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~-~~g~~i~--G--~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e 397 (974)
|+|.|+-.|..+++-|.++.+..- .+..+..+ ..|+.+. | +++. ++++..- ..+|++++++|.+...+.+.+
T Consensus 9 IvGATG~vG~ellrlL~~~~hP~~-~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~-~~~Dvvf~a~p~~~s~~~~~~ 85 (336)
T PRK08040 9 LLGATGAVGEALLELLAERQFPVG-ELYALASEESAGETLRFGGKSVTVQ-DAAEFDW-SQAQLAFFVAGREASAAYAEE 85 (336)
T ss_pred EEccCCHHHHHHHHHHhcCCCCce-EEEEEEccCcCCceEEECCcceEEE-eCchhhc-cCCCEEEECCCHHHHHHHHHH
Confidence 478888888888887777433321 45555432 2233331 1 2222 3443320 268999999999999999999
Q ss_pred HHHcCCcEEEEEcCCCChHH---------HHHHHHHHhcCCCCceEEccCCcc
Q psy3769 398 AIESELELVICITEGIPVRD---------MLILKNKMKKNNSKTLLLGPNCPG 441 (974)
Q Consensus 398 ~~~~gv~~~vi~s~G~~e~~---------~~~l~~~a~~~~~gi~viGPnc~G 441 (974)
+.++|++ +|=+|+.|..++ -.+.++..+ +.+ .|--|||.-
T Consensus 86 ~~~~g~~-VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~--~~~-iIAnPgC~~ 134 (336)
T PRK08040 86 ATNAGCL-VIDSSGLFALEPDVPLVVPEVNPFVLADYR--NRN-IIAVADSLT 134 (336)
T ss_pred HHHCCCE-EEECChHhcCCCCCceEccccCHHHHhhhc--cCC-EEECCCHHH
Confidence 9999987 466666554221 011122233 333 577899974
No 318
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=50.99 E-value=4.8e+02 Score=33.59 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=33.5
Q ss_pred CCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEcc-CCcEEEEEEE
Q psy3769 168 SIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINS-KNKIISLDIK 215 (974)
Q Consensus 168 g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~-~g~~~alDak 215 (974)
-++++.+.++.++..++-+.|... .-+| +.++. +|+++.|.+|
T Consensus 286 ~L~~~~l~~La~l~~~lE~~fg~p--qDIE---Wa~~~~~g~l~iLQaR 329 (782)
T TIGR01418 286 SLSDEEILELAKLAVLIEKHYGRP--MDIE---WAKDGFDGEIFIVQAR 329 (782)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC--ceeE---EEEECCCCeEEEEEee
Confidence 467788899999999999998763 2445 56653 7789999998
No 319
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=50.74 E-value=46 Score=35.29 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=63.1
Q ss_pred hhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhhcccc
Q psy3769 691 SIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIE----KFSSIIILCSILLGYLSGNMIFSDQS 763 (974)
Q Consensus 691 s~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~----~~~~l~~~~~~~l~~ig~~l~~~~~~ 763 (974)
.+.|+|--.++|.+.+.+.+--++.-..+++..++..++..=..+++ .-+.++.++..+|.++|++|+.....
T Consensus 20 P~G~ipvf~slt~~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~~~ 96 (203)
T COG2095 20 PIGNLPVFISLTKGLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGPTS 96 (203)
T ss_pred CCchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCCcC
Confidence 57889999999998777777789999999999999888888888887 45789999999999999999997654
No 320
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=49.86 E-value=33 Score=39.96 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=51.0
Q ss_pred cccccCcccccchhhhhccC-CCCceEEEEecCCCCCcccc-------c--cccccchhhhcccCCCcEEEEEecchhHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYG-NGKKAFVAGVNPKKNGQKFE-------E--IPIFDTVKNAKNETGATVSVIYVPAIFAT 392 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g-~~g~~~V~pVnP~~~g~~i~-------G--~~~y~sl~dip~~~~vDlavi~vp~~~v~ 392 (974)
|+|.|+..|..+++.|.++. ++ ..+....+..|+.+. + .+.+.+++... -..+|++++++|.+...
T Consensus 43 IvGATG~vG~eLlrlL~~hP~~e---l~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~-~~~~DvVf~Alp~~~s~ 118 (381)
T PLN02968 43 VLGASGYTGAEVRRLLANHPDFE---ITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDAD-FSDVDAVFCCLPHGTTQ 118 (381)
T ss_pred EECCCChHHHHHHHHHHhCCCCe---EEEEEChhhcCCCchhhCccccCccccceecCCHHH-hcCCCEEEEcCCHHHHH
Confidence 47888888888888777763 33 222232222232221 0 11122222110 02689999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCC
Q psy3769 393 SAIWEAIESELELVICITEGIP 414 (974)
Q Consensus 393 ~~v~e~~~~gv~~~vi~s~G~~ 414 (974)
+.+.+. ++|++ +|-+|+.|.
T Consensus 119 ~i~~~~-~~g~~-VIDlSs~fR 138 (381)
T PLN02968 119 EIIKAL-PKDLK-IVDLSADFR 138 (381)
T ss_pred HHHHHH-hCCCE-EEEcCchhc
Confidence 988885 67855 677777664
No 321
>COG1971 Predicted membrane protein [Function unknown]
Probab=49.56 E-value=1e+02 Score=32.28 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhchHHHHHHh--cccccccccchhhHHHHHHHHH--HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHH
Q psy3769 680 IKTIIFADLIMSIDNVLAIAGT--ASQISNKYQMLLVIIGILFSIP--IIIFGSKLVLILIEKFS--SIIILCSILLGYL 753 (974)
Q Consensus 680 v~~I~~~D~~fs~Dsv~a~~~~--t~~~~~~~~~~li~~g~~~~i~--~l~~~~~~~~~~~~~~~--~l~~~~~~~l~~i 753 (974)
+.++.+.=+.+|+|+.-..++- +...+.=. -...++.++++. +|-..-.++.+++.+|+ +=.|++..+|.++
T Consensus 3 ~~sllllA~alsmDAFav~l~~G~~~~k~~~~--~~L~ia~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~l 80 (190)
T COG1971 3 IISLLLLAIALSMDAFAVSLGKGLAKHKIRFK--EALVIALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIIL 80 (190)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhhhhccccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777789999998766543 22111101 123344444332 22222223334444433 2356899999999
Q ss_pred HHHhhhccc
Q psy3769 754 SGNMIFSDQ 762 (974)
Q Consensus 754 g~~l~~~~~ 762 (974)
|.+|+.+..
T Consensus 81 G~~mI~e~f 89 (190)
T COG1971 81 GLKMIIEGF 89 (190)
T ss_pred HHHHHHHHh
Confidence 999999753
No 322
>PRK10995 inner membrane protein; Provisional
Probab=48.84 E-value=62 Score=34.69 Aligned_cols=71 Identities=10% Similarity=0.264 Sum_probs=47.4
Q ss_pred hchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHhhhccc
Q psy3769 692 IDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILI----EKFSSIIILCSILLGYLSGNMIFSDQ 762 (974)
Q Consensus 692 ~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~----~~~~~l~~~~~~~l~~ig~~l~~~~~ 762 (974)
+-|+|.-.++|++.+++.+--+..-+.+.+..++..++..-.-++ -..+.++.++..+|.++|++|+...+
T Consensus 22 ~g~~pif~~lt~~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~~ 96 (221)
T PRK10995 22 LTTVALFLGLSGNMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQQ 96 (221)
T ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 457788888888665444444555555555444444444433333 35589999999999999999987543
No 323
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=48.72 E-value=31 Score=34.68 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=34.6
Q ss_pred ccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc--CCcEEEEEcCCC
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES--ELELVICITEGI 413 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~--gv~~~vi~s~G~ 413 (974)
.+.+..+++++.+ ..|+.++++|+....+++++.... .-..+++.+.||
T Consensus 56 ~i~~t~dl~~a~~--~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 56 NIKATTDLEEALE--DADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp TEEEESSHHHHHT--T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred ccccccCHHHHhC--cccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 4567788888876 789999999999999999998762 223456777788
No 324
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=48.48 E-value=21 Score=42.29 Aligned_cols=107 Identities=13% Similarity=0.241 Sum_probs=66.3
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCC-----CCCccc---cccccccchhhhcccCCCcEEEEEecchhHHHHH
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPK-----KNGQKF---EEIPIFDTVKNAKNETGATVSVIYVPAIFATSAI 395 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~-----~~g~~i---~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v 395 (974)
+| .++.|+...-||...|.+ +++++.+. ..+.+. .|.+. .+++|+.. ..|++++.+|...-..+-
T Consensus 42 IG-yGSqG~AqAlNLrdSGvn---Vvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~--~ADvVviLlPDt~q~~v~ 114 (487)
T PRK05225 42 VG-CGAQGLNQGLNMRDSGLD---ISYALRKEAIAEKRASWRKATENGFKV-GTYEELIP--QADLVINLTPDKQHSDVV 114 (487)
T ss_pred Ec-cCHHHHHHhCCCccccce---eEEeccccccccccchHHHHHhcCCcc-CCHHHHHH--hCCEEEEcCChHHHHHHH
Confidence 45 345677777788888887 67777663 111222 57755 57888765 799999999998633333
Q ss_pred HHHHH--cCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccc
Q psy3769 396 WEAIE--SELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGL 442 (974)
Q Consensus 396 ~e~~~--~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~ 442 (974)
+-+. ..-.+++.+|-||...... ...-. .-++-++-|.|+|-
T Consensus 115 -~~i~p~LK~Ga~L~fsHGFni~~~~--i~~~~--dvdVimvAPKgpG~ 158 (487)
T PRK05225 115 -RAVQPLMKQGAALGYSHGFNIVEVG--EQIRK--DITVVMVAPKCPGT 158 (487)
T ss_pred -HHHHhhCCCCCEEEecCCceeeeCc--eeCCC--CCcEEEECCCCCCc
Confidence 4333 2345678899998744211 11112 34556678888773
No 325
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.43 E-value=53 Score=36.05 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=60.1
Q ss_pred HHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHH-------------------------HHHH
Q psy3769 683 IIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVL-------------------------ILIE 737 (974)
Q Consensus 683 I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~-------------------------~~~~ 737 (974)
..+..+..|+||-+-=+++-++-++-=+--..-.|.++++.+||...-++. -+.+
T Consensus 42 LavLEiSLSFDNAIvNA~iLk~MS~~Wqk~FLT~GIlIAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~ 121 (346)
T COG2899 42 LAVLEISLSFDNAIVNAAILKDMSPFWQKRFLTWGILIAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITD 121 (346)
T ss_pred HHHhhhheechHHHhhHHHHHhccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHh
Confidence 345688999999988888877543222223556799999999999887664 2456
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcc
Q psy3769 738 KFSSIIILCSILLGYLSGNMIFSD 761 (974)
Q Consensus 738 ~~~~l~~~~~~~l~~ig~~l~~~~ 761 (974)
.||-+.-.+..+|.+++.+-+++.
T Consensus 122 aH~~IAAFGG~FLlMv~L~fffd~ 145 (346)
T COG2899 122 AHPQIAAFGGTFLLMVFLDFFFDH 145 (346)
T ss_pred cCchhhhhhhHHHHHHHHHHhcCc
Confidence 788888888999999999999873
No 326
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=48.19 E-value=84 Score=34.18 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=39.7
Q ss_pred CCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCC------------ccccccccccchhhhcccCCCcE
Q psy3769 314 NNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG------------QKFEEIPIFDTVKNAKNETGATV 381 (974)
Q Consensus 314 ~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g------------~~i~G~~~y~sl~dip~~~~vDl 381 (974)
.++++|||+-.+ ++..| .+.+.|+.+|+. .++-|||+.+- +-+.+-+.|+|++|+.. +.|+
T Consensus 3 ~~i~iVLVep~~-~gNIG-~vARaMKNfGl~---eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~--d~~~ 75 (242)
T COG0565 3 ENIRIVLVEPSH-PGNIG-SVARAMKNFGLS---ELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALA--DCDL 75 (242)
T ss_pred CccEEEEEcCCC-CccHH-HHHHHHHhCCcc---eEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhc--CCCE
Confidence 356778775543 22333 256677788999 79999999720 12345666666666654 5555
Q ss_pred EEEE
Q psy3769 382 SVIY 385 (974)
Q Consensus 382 avi~ 385 (974)
++-.
T Consensus 76 v~aT 79 (242)
T COG0565 76 VVAT 79 (242)
T ss_pred EEEe
Confidence 4433
No 327
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.88 E-value=29 Score=38.16 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=51.3
Q ss_pred ccccccccchhhhcccCCCcEEEEEecchhH----HHHHHHHHHcCCcEEEEEcCC-CChHHHHHHHHHHhcCCCCceEE
Q psy3769 361 FEEIPIFDTVKNAKNETGATVSVIYVPAIFA----TSAIWEAIESELELVICITEG-IPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 361 i~G~~~y~sl~dip~~~~vDlavi~vp~~~v----~~~v~e~~~~gv~~~vi~s~G-~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
-.|+|.|-+.+++|+ .+|+|.+.|....+ .+..+...++|+. ++++. .-.++-.++++.|+ +.|-|..
T Consensus 48 ~~GVply~~~eelpd--~idiACVvVrsai~Gg~Gs~larall~RGi~---VlqEHPl~p~di~~l~rlA~--rqG~~y~ 120 (361)
T COG4693 48 RLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQGSALARALLARGIH---VLQEHPLHPRDIQDLLRLAE--RQGRRYL 120 (361)
T ss_pred HhCCccccCHhhCCC--CCCeEEEEEeeeeecCCcHHHHHHHHHcccH---HHHhCCCCHHHHHHHHHHHH--HhCcEEE
Confidence 469999999999998 99999998876543 5677777888876 45554 22345577889999 8886654
No 328
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=47.53 E-value=31 Score=42.56 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=52.0
Q ss_pred CCCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHH
Q psy3769 459 KKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIK 538 (974)
Q Consensus 459 ~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~ 538 (974)
.++.||+|.-+|.+... .+- .-.+|.+ ++.+.++.+.+||++|+|++.+.+.|..-.......+
T Consensus 306 ~~~~vavI~~~G~I~~~-------~~~----~~~~~~~-----~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~ 369 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADG-------RDT----EGNTGGD-----TVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRR 369 (584)
T ss_pred CCCeEEEEEEEEEEcCC-------CCc----ccccCHH-----HHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHH
Confidence 46789999999988421 110 0012222 4678889999999999999999987653222222222
Q ss_pred h-----cCCCCEEEEecccC
Q psy3769 539 K-----NMKKPVIGFIAGIT 553 (974)
Q Consensus 539 ~-----~~~KPVv~lk~Grs 553 (974)
+ +.+||||+.-.|-.
T Consensus 370 ~i~~~~~~gKPVva~~~g~a 389 (584)
T TIGR00705 370 ELARAQARGKPVIVSMGAMA 389 (584)
T ss_pred HHHHHHhCCCcEEEEECCcc
Confidence 1 45799999987754
No 329
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=46.89 E-value=35 Score=39.25 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=30.1
Q ss_pred CCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCC
Q psy3769 378 GATVSVIYVPAIFATSAIWEAIESELELVICITEGIP 414 (974)
Q Consensus 378 ~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~ 414 (974)
.+|+++.++|.....+.++++.+.|++ +|.+++.|.
T Consensus 76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~-vIDls~~fR 111 (349)
T PRK08664 76 DVDIVFSALPSDVAGEVEEEFAKAGKP-VFSNASAHR 111 (349)
T ss_pred CCCEEEEeCChhHHHHHHHHHHHCCCE-EEECCchhc
Confidence 689999999999999999888899988 467776553
No 330
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.81 E-value=31 Score=39.48 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=37.9
Q ss_pred cccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc-CCc-EEEEEcCCCChH
Q psy3769 364 IPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES-ELE-LVICITEGIPVR 416 (974)
Q Consensus 364 ~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~-gv~-~~vi~s~G~~e~ 416 (974)
+.+..+++++.+ ..|++++++|+..+.+++++.... .-+ .++.++.|+...
T Consensus 65 i~~t~d~~~a~~--~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 65 LRATTDFAEAAN--CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred eEEECCHHHHHh--cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 345567776655 789999999999999999998753 222 467888898753
No 331
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=46.80 E-value=20 Score=35.47 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=54.2
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCccc------ccc----ccccchhhhcccCCCcEEEEEecchhH--
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF------EEI----PIFDTVKNAKNETGATVSVIYVPAIFA-- 391 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i------~G~----~~y~sl~dip~~~~vDlavi~vp~~~v-- 391 (974)
+|. +..|..+.+.+.+.|.. .|+.++++. +.. .+. ..+.+.+++.+ ..|+++.++|+...
T Consensus 25 iG~-G~~g~~~a~~l~~~g~~---~v~v~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 25 LGA-GGAARAVAYALAELGAA---KIVIVNRTL--EKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGMKPG 96 (155)
T ss_pred ECC-cHHHHHHHHHHHHCCCC---EEEEEcCCH--HHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCCCCC
Confidence 453 45677777777766533 466666543 211 121 13445555544 79999999999764
Q ss_pred HH--HHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEc
Q psy3769 392 TS--AIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLG 436 (974)
Q Consensus 392 ~~--~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viG 436 (974)
.+ ..+.+.+.|. .++-++ -.+... ++.+.++ +.|++++.
T Consensus 97 ~~~~~~~~~~~~~~-~v~D~~-~~~~~~--~l~~~~~--~~g~~~v~ 137 (155)
T cd01065 97 DELPLPPSLLKPGG-VVYDVV-YNPLET--PLLKEAR--ALGAKTID 137 (155)
T ss_pred CCCCCCHHHcCCCC-EEEEcC-cCCCCC--HHHHHHH--HCCCceeC
Confidence 11 2234444442 222222 223322 6678888 88887764
No 332
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.55 E-value=75 Score=33.92 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=67.2
Q ss_pred CcccccchhhhhccCCCCceEEEEec--CCCCCccccccccccchhhhcccCCCcEEEEE-ecchhHHHHHHHHHHcCCc
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVN--PKKNGQKFEEIPIFDTVKNAKNETGATVSVIY-VPAIFATSAIWEAIESELE 404 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVn--P~~~g~~i~G~~~y~sl~dip~~~~vDlavi~-vp~~~v~~~v~e~~~~gv~ 404 (974)
+.+|.++.+|+...||.- .+..|. |..-...|.- ...-|..+ .+.|++|-+ ..++-.....+++...|++
T Consensus 10 g~yG~R~~~nl~~~~f~~--~~v~v~~~Pe~~~~fie~--P~~~Lp~~---~e~Di~va~~lHPDl~~~L~e~~~~~~~~ 82 (224)
T COG1810 10 GEYGKRAVNNLACKGFKN--QFVAVKEYPEELPDFIEE--PEDLLPKL---PEADIVVAYGLHPDLLLALPEKAAEGGVK 82 (224)
T ss_pred ccchHHHHHhHhhhcccc--ceEEEEeccccccchhhC--HHHhcCCC---CCCCEEEEeccCccHHHHHHHHHHhCCcc
Confidence 468889999999777763 232221 2210000100 00112222 368999877 7999999999999889999
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcccccc
Q psy3769 405 LVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVP 445 (974)
Q Consensus 405 ~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~ 445 (974)
++ |+.++-++--..+|.+.+. +.|+.+.-|.-+--..+
T Consensus 83 al-Ivp~~~~~g~rkqL~~~~~--~~g~e~~~p~p~C~Le~ 120 (224)
T COG1810 83 AL-IVPAEPPEGLRKQLKEFCE--ELGVEFEAPEPFCSLEP 120 (224)
T ss_pred EE-EEecCCChhHHHHHHHHhh--hcceeeecCCccccCCC
Confidence 74 5554444323467888888 99999987776544444
No 333
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=46.42 E-value=55 Score=36.44 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=51.7
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----ccc-ccc-cch-hhhcccCCCcEEEEEecchhHHHHH
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEI-PIF-DTV-KNAKNETGATVSVIYVPAIFATSAI 395 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~-~~y-~sl-~dip~~~~vDlavi~vp~~~v~~~v 395 (974)
.| .|..|..+.+.+.+.|+.. .+++..+.. .+. .|+ ..+ .+. .+.. ...|+++++||...+.+++
T Consensus 9 vG-~GliG~s~a~~l~~~g~~v--~i~g~d~~~--~~~~~a~~lgv~d~~~~~~~~~~~--~~aD~VivavPi~~~~~~l 81 (279)
T COG0287 9 VG-LGLMGGSLARALKEAGLVV--RIIGRDRSA--ATLKAALELGVIDELTVAGLAEAA--AEADLVIVAVPIEATEEVL 81 (279)
T ss_pred EC-CchHHHHHHHHHHHcCCeE--EEEeecCcH--HHHHHHhhcCcccccccchhhhhc--ccCCEEEEeccHHHHHHHH
Confidence 45 5678899999999999885 689998875 221 232 222 222 2221 2579999999999999999
Q ss_pred HHHHH-cCCcE
Q psy3769 396 WEAIE-SELEL 405 (974)
Q Consensus 396 ~e~~~-~gv~~ 405 (974)
++... .....
T Consensus 82 ~~l~~~l~~g~ 92 (279)
T COG0287 82 KELAPHLKKGA 92 (279)
T ss_pred HHhcccCCCCC
Confidence 99985 34344
No 334
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=46.21 E-value=16 Score=41.11 Aligned_cols=69 Identities=9% Similarity=0.169 Sum_probs=38.6
Q ss_pred cCCCCCCceeeCC-HHHHHHHH--HHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccCCCCC
Q psy3769 15 FNVTIPKGILCMN-VDEAIKAA--KKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGE 91 (974)
Q Consensus 15 ~GIpvp~~~~~~s-~eea~~~a--~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~ 91 (974)
..+.+|+..++.+ .++..+.. ..+. +|+++||.+.+| ..++--..++-+++.+.+. . .
T Consensus 111 ~~i~~P~~v~i~~~~~~~~~~l~~agL~-fPlI~KPlvA~G-sa~SH~Maivf~~~gL~~L-----~------------~ 171 (307)
T PF05770_consen 111 GRIRVPKFVVINSDAESLPELLKEAGLK-FPLICKPLVACG-SADSHKMAIVFNEEGLKDL-----K------------P 171 (307)
T ss_dssp TTEE-S-EEEESSSHCCHHHHHHCTTS--SSEEEEESB-SS-TSCCCEEEEE-SGGGGTT-------------------S
T ss_pred CcccCCceEEEcCCHHHHHHHHHHCCCc-ccEEeeehhhcC-CccceEEEEEECHHHHhhc-----C------------C
Confidence 4788999999873 33333322 2466 899999988774 3355577788888776541 0 1
Q ss_pred ceeEEEEEEEeccc
Q psy3769 92 NVFCVLIEEYIDIK 105 (974)
Q Consensus 92 ~~~~vLVee~v~~~ 105 (974)
.+++|||++++
T Consensus 172 ---P~VlQeFVNHg 182 (307)
T PF05770_consen 172 ---PCVLQEFVNHG 182 (307)
T ss_dssp ---SEEEEE----T
T ss_pred ---CEEEEEeecCC
Confidence 24899999886
No 335
>cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase. Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.
Probab=46.08 E-value=20 Score=38.78 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=22.0
Q ss_pred ccccCeEEEecCCcEeEEEEEeec
Q psy3769 942 FNLIDCIVENIHGKLLGTVTEIIQ 965 (974)
Q Consensus 942 ~DLiG~~V~d~~g~~lG~V~~v~~ 965 (974)
.|++|+.|++.+|+.+|+|+|++-
T Consensus 146 ~DprGl~V~g~DGevvGtV~Dv~v 169 (246)
T cd00226 146 VDPRGLPVVGADGEVAGKVTDLWV 169 (246)
T ss_pred CCCCCCEeEcCCCcEeEEEEEEEE
Confidence 589999999999999999999965
No 336
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=46.07 E-value=35 Score=39.07 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=54.9
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEe-cCCCCCcccc--cc-ccccchh--hhcccCCCcEEEEEecchhHHHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGV-NPKKNGQKFE--EI-PIFDTVK--NAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pV-nP~~~g~~i~--G~-~~y~sl~--dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
|.|.|+-.|..+++-|.+.+++.. .+..+ +++..|+.+. |. -.+..++ ++ . .+|++++++|.....+.+.
T Consensus 9 IvGATG~vG~eLlrlL~~~~hP~~-~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~-~--~vD~vFla~p~~~s~~~v~ 84 (336)
T PRK05671 9 VVGATGTVGEALVQILEERDFPVG-TLHLLASSESAGHSVPFAGKNLRVREVDSFDF-S--QVQLAFFAAGAAVSRSFAE 84 (336)
T ss_pred EEccCCHHHHHHHHHHhhCCCCce-EEEEEECcccCCCeeccCCcceEEeeCChHHh-c--CCCEEEEcCCHHHHHHHHH
Confidence 578888888888888886555421 33333 3333233222 20 0111111 22 2 6899999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCC
Q psy3769 397 EAIESELELVICITEGIP 414 (974)
Q Consensus 397 e~~~~gv~~~vi~s~G~~ 414 (974)
++.++|++ +|=+|+.|.
T Consensus 85 ~~~~~G~~-VIDlS~~fR 101 (336)
T PRK05671 85 KARAAGCS-VIDLSGALP 101 (336)
T ss_pred HHHHCCCe-EEECchhhc
Confidence 99999987 466676664
No 337
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=45.62 E-value=63 Score=37.06 Aligned_cols=55 Identities=33% Similarity=0.309 Sum_probs=36.8
Q ss_pred EEEEeeeecCcccccC-eEEEeCCHHHHHHHHHHHHhccccccccCCCCCceeEEEEEEEecccee
Q psy3769 43 WVIKAQIHAGGRGKCG-GIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKE 107 (974)
Q Consensus 43 vVvK~qi~~ggrgk~G-GV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~~~~~vLVee~v~~~~E 107 (974)
|+||++. |--| ||..++|.+|+..--++-.++-. +.+.|.+++.|+|||-+. ..|
T Consensus 260 ViVKADa-----GTYGMGImtv~~~~ev~~LNrK~RnKM~----~~Keg~~V~~VIiQEGV~-T~E 315 (403)
T TIGR02049 260 VIVKADA-----GTYGMGIMTATSGEEVLGLNRKERNKMA----KVKEGLEVSEVIIQEGVY-TFE 315 (403)
T ss_pred EEEEcCC-----CCCCceEEEecCHHHHHHhhhhhhhhcc----cccCCCccceEEEecCcc-eee
Confidence 5788864 2233 89899999999875443322211 234688999999999775 344
No 338
>COG4280 Predicted membrane protein [Function unknown]
Probab=45.28 E-value=1.5e+02 Score=31.19 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=88.9
Q ss_pred hhcChhHHHHHHHHcccCCccccceEEEehhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhccc----
Q psy3769 592 ILLGSTDAIIIALACRNLQPNIRTKGIIFGTFGAIAIRIILVIFSINLL---NLKYIKIIGGFLLFWISIKLLSND---- 664 (974)
Q Consensus 592 ~~Ls~Dn~~vial~~~~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll---~~~~~~~~gg~~Ll~~~~~~~~~~---- 664 (974)
++++..+++.++.+..+.- .-+--++|++-++++-.+..+...-++ -...++++-|.+|+|-++|.++..
T Consensus 13 SlvElvEa~aIa~avg~~~---~wr~al~ga~lglalvl~l~lvlGk~L~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ 89 (236)
T COG4280 13 SLVELVEAGAIAAAVGNIY---KWRLALIGAVLGLALVLILTLVLGKLLYLVPLNYLQIVSGVLLLLFGYRWIRSAVRRF 89 (236)
T ss_pred HHHHHHHHHHHHHhhhhhc---cccHHHHHHHHHHHHHHHHHHHHccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777776543 223335666655555555444444343 456899999999999999888541
Q ss_pred -------CCcc-c-----ccCCCcH-HHHHHHHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHH
Q psy3769 665 -------HNYT-T-----IASGKNL-IHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSK 730 (974)
Q Consensus 665 -------~~~~-~-----~~~~~~~-~~~v~~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~ 730 (974)
.+++ + .+..+.+ |.++...-- +-.+|++-.++.+-.=++-+++..-.+.|..++......+..
T Consensus 90 ag~rkg~~ee~leE~~~ldq~e~g~~~la~l~~fk---~v~LeglEv~~iVialgaa~sqwleAi~gagfA~vlvlvl~~ 166 (236)
T COG4280 90 AGIRKGGGEEKLEEGIVLDQEEEGFSKLALLVVFK---VVALEGLEVSLIVIALGAASSQWLEAIMGAGFASVLVLVLTA 166 (236)
T ss_pred hchhccCchhhHhhhhhcccccccchhhhHHHHhH---HHHHhhheeeeeeeeechhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 0 0111111 111111111 112333222111110001112577778888888888888888
Q ss_pred HHHHHHHhhh--hHHHHHHHHHHHHHHHhhhccc
Q psy3769 731 LVLILIEKFS--SIIILCSILLGYLSGNMIFSDQ 762 (974)
Q Consensus 731 ~~~~~~~~~~--~l~~~~~~~l~~ig~~l~~~~~ 762 (974)
++-.-+.|.| .+|..+..+|.-.|.--+-++-
T Consensus 167 ~lh~plarvpe~~lKfvag~lL~sfGtfWlgegv 200 (236)
T COG4280 167 ILHSPLARVPEPHLKFVAGALLFSFGTFWLGEGV 200 (236)
T ss_pred HhccHHhhCCchhHHHHHHHHHHHhhHHHhcccc
Confidence 8877777765 6788887777666654444433
No 339
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=44.85 E-value=5.8e+02 Score=33.33 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=32.9
Q ss_pred CCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEEEEe
Q psy3769 168 SIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFN 217 (974)
Q Consensus 168 g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDaki~ 217 (974)
.+++..+.++.++..++-+.|.... -+| ..+ .+|+++.|.||=+
T Consensus 268 ~L~~~~~~~L~~l~~~ie~~~g~pq--DIE---w~~-~~~~l~ilQaRPi 311 (871)
T PRK06241 268 TLTDEQILELARLGRKIEAHFGCPQ--DIE---WCL-ADGTFYILQSRPI 311 (871)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCc--ceE---EEE-ECCEEEEEEcCCc
Confidence 4677888999999999998887642 334 555 4678999999844
No 340
>PRK08605 D-lactate dehydrogenase; Validated
Probab=44.53 E-value=44 Score=38.18 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=55.9
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHH--HHHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAI--WEAIE 400 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v--~e~~~ 400 (974)
|+| .|..|..+.+.+.+ +|.- .|+..+|......-.+.....+++++.+ ..|++++++|.......+ ++..+
T Consensus 151 IIG-~G~IG~~vA~~L~~-~~g~--~V~~~d~~~~~~~~~~~~~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~~~l~ 224 (332)
T PRK08605 151 VIG-TGRIGLAVAKIFAK-GYGS--DVVAYDPFPNAKAATYVDYKDTIEEAVE--GADIVTLHMPATKYNHYLFNADLFK 224 (332)
T ss_pred EEC-CCHHHHHHHHHHHh-cCCC--EEEEECCCccHhHHhhccccCCHHHHHH--hCCEEEEeCCCCcchhhhcCHHHHh
Confidence 345 35677777778732 3432 4788887641111123444458888876 789999999986544443 12222
Q ss_pred -cCCcEEEEE-cCCCChHHHHHHHHHHhcCCCCce
Q psy3769 401 -SELELVICI-TEGIPVRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 401 -~gv~~~vi~-s~G~~e~~~~~l~~~a~~~~~gi~ 433 (974)
..-..+++- +.|. ..++..|.+..+ +..++
T Consensus 225 ~mk~gailIN~sRG~-~vd~~aL~~aL~--~g~i~ 256 (332)
T PRK08605 225 HFKKGAVFVNCARGS-LVDTKALLDALD--NGLIK 256 (332)
T ss_pred cCCCCcEEEECCCCc-ccCHHHHHHHHH--hCCee
Confidence 222333332 3343 334555666666 55443
No 341
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=44.42 E-value=44 Score=38.94 Aligned_cols=65 Identities=9% Similarity=0.113 Sum_probs=48.2
Q ss_pred ccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCC
Q psy3769 367 FDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNC 439 (974)
Q Consensus 367 y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc 439 (974)
.+.+.++.. ..|+++.+.|+.....+++.|++.|+.. +=.|-. .+. ..++.+.|+ ++|+..+ |+|
T Consensus 59 ~~al~~li~--~~d~VIn~~p~~~~~~i~ka~i~~gv~y-vDts~~-~~~-~~~~~~~a~--~Agit~v-~~~ 123 (389)
T COG1748 59 VDALVALIK--DFDLVINAAPPFVDLTILKACIKTGVDY-VDTSYY-EEP-PWKLDEEAK--KAGITAV-LGC 123 (389)
T ss_pred hHHHHHHHh--cCCEEEEeCCchhhHHHHHHHHHhCCCE-EEcccC-Cch-hhhhhHHHH--HcCeEEE-ccc
Confidence 345556655 5599999999999999999999999996 333322 222 366778888 8898877 665
No 342
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=43.85 E-value=50 Score=37.82 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=31.0
Q ss_pred CCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCC
Q psy3769 378 GATVSVIYVPAIFATSAIWEAIESELELVICITEGIP 414 (974)
Q Consensus 378 ~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~ 414 (974)
.+|+++.++|.....+..+++.++|++ +|.+++-|.
T Consensus 73 ~~DvVf~a~p~~~s~~~~~~~~~~G~~-VIDlsg~fR 108 (341)
T TIGR00978 73 DVDIVFSALPSEVAEEVEPKLAEAGKP-VFSNASNHR 108 (341)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHCCCE-EEECChhhc
Confidence 799999999999999999999999988 477776654
No 343
>PLN03139 formate dehydrogenase; Provisional
Probab=43.52 E-value=74 Score=37.18 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=61.6
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCc---cccccccccchhhhcccCCCcEEEEEecc-hhHHHHHHH-H
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQ---KFEEIPIFDTVKNAKNETGATVSVIYVPA-IFATSAIWE-A 398 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~---~i~G~~~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~e-~ 398 (974)
+| .|..|..+.+.+..+|++ |..++|..... .-.|...+.+++++.. ..|++++++|- +.+...+.+ .
T Consensus 205 VG-~G~IG~~vA~~L~afG~~----V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~~~~ 277 (386)
T PLN03139 205 VG-AGRIGRLLLQRLKPFNCN----LLYHDRLKMDPELEKETGAKFEEDLDAMLP--KCDVVVINTPLTEKTRGMFNKER 277 (386)
T ss_pred Ee-ecHHHHHHHHHHHHCCCE----EEEECCCCcchhhHhhcCceecCCHHHHHh--hCCEEEEeCCCCHHHHHHhCHHH
Confidence 44 356888899999888876 55566652111 2346677789999976 79999999995 334444422 2
Q ss_pred HH-cCCcEEEEEcCCC-ChHHHHHHHHHHhcCCCCce
Q psy3769 399 IE-SELELVICITEGI-PVRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 399 ~~-~gv~~~vi~s~G~-~e~~~~~l~~~a~~~~~gi~ 433 (974)
.+ ..-.+ +++..+- +--+++.|.+..+ +..++
T Consensus 278 l~~mk~ga-~lIN~aRG~iVDe~AL~~AL~--sG~l~ 311 (386)
T PLN03139 278 IAKMKKGV-LIVNNARGAIMDTQAVADACS--SGHIG 311 (386)
T ss_pred HhhCCCCe-EEEECCCCchhhHHHHHHHHH--cCCce
Confidence 22 23334 4444432 3345666777777 55554
No 344
>PRK10949 protease 4; Provisional
Probab=43.47 E-value=44 Score=41.45 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=51.8
Q ss_pred CCCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHH
Q psy3769 459 KKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIK 538 (974)
Q Consensus 459 ~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~ 538 (974)
..+.||+|.-+|++... ...-| ++|. -++.+.|+-..+||++|+|++.+.+.|..........+
T Consensus 324 ~~~~Iavi~~~G~I~~g------~~~~g-----~~~~-----~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~ 387 (618)
T PRK10949 324 TGGSIAVIFANGAIMDG------EETPG-----NVGG-----DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA 387 (618)
T ss_pred CCCeEEEEEEEEEEcCC------CCcCC-----CcCH-----HHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHH
Confidence 35789999999998421 00111 1222 24678899999999999999999988765322222222
Q ss_pred h-----cCCCCEEEEeccc
Q psy3769 539 K-----NMKKPVIGFIAGI 552 (974)
Q Consensus 539 ~-----~~~KPVv~lk~Gr 552 (974)
+ +.+||||+.-.+-
T Consensus 388 ~i~~~r~~gKPVvas~~~~ 406 (618)
T PRK10949 388 ELAAARAAGKPVVVSMGGM 406 (618)
T ss_pred HHHHHHhcCCcEEEEECCC
Confidence 2 4579999986554
No 345
>PRK06444 prephenate dehydrogenase; Provisional
Probab=43.16 E-value=24 Score=37.26 Aligned_cols=50 Identities=26% Similarity=0.215 Sum_probs=40.1
Q ss_pred EccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHH
Q psy3769 321 VNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAI 399 (974)
Q Consensus 321 vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~ 399 (974)
+.|+|..|+.|....+.+.+.||. |+ + . ..|++++++|...+.+++++..
T Consensus 3 ~~iiG~~G~mG~~~~~~~~~~g~~----v~----------------------~-~--~~DlVilavPv~~~~~~i~~~~ 52 (197)
T PRK06444 3 EIIIGKNGRLGRVLCSILDDNGLG----VY----------------------I-K--KADHAFLSVPIDAALNYIESYD 52 (197)
T ss_pred EEEEecCCcHHHHHHHHHHhCCCE----EE----------------------E-C--CCCEEEEeCCHHHHHHHHHHhC
Confidence 346788889999988888888876 32 1 2 5799999999999999998864
No 346
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=42.78 E-value=37 Score=38.65 Aligned_cols=46 Identities=7% Similarity=-0.090 Sum_probs=35.9
Q ss_pred cchhhhc-ccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCC
Q psy3769 368 DTVKNAK-NETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIP 414 (974)
Q Consensus 368 ~sl~dip-~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~ 414 (974)
++.+++| .+..+|+++.+++.....+....++++|++. |++|+-+.
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~-V~~SaP~~ 124 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKR-VLFSHPGA 124 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeE-EEecCCCc
Confidence 3566665 2248999999999999999999999999986 56665443
No 347
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=42.05 E-value=35 Score=41.50 Aligned_cols=98 Identities=13% Similarity=0.139 Sum_probs=59.1
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCc--cccccccccchhhhcccCCCcEEEEEecch-hHHHHH--HHHHHcC
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQ--KFEEIPIFDTVKNAKNETGATVSVIYVPAI-FATSAI--WEAIESE 402 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~--~i~G~~~y~sl~dip~~~~vDlavi~vp~~-~v~~~v--~e~~~~g 402 (974)
|..|..+.+.+..+|++ |+.++|....+ .-.|.+.+.+++++-. ..|++++++|.. .+...+ +......
T Consensus 147 G~IG~~vA~~l~~fG~~----V~~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~~~l~~mk 220 (525)
T TIGR01327 147 GRIGSIVAKRAKAFGMK----VLAYDPYISPERAEQLGVELVDDLDELLA--RADFITVHTPLTPETRGLIGAEELAKMK 220 (525)
T ss_pred CHHHHHHHHHHHhCCCE----EEEECCCCChhHHHhcCCEEcCCHHHHHh--hCCEEEEccCCChhhccCcCHHHHhcCC
Confidence 56788888899887775 77788742111 2246666678999976 799999999964 334444 2222233
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhcCCCCce
Q psy3769 403 LELVICITEGIPVRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 403 v~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~ 433 (974)
-.++++-.+--+--++..|.+..+ +..++
T Consensus 221 ~ga~lIN~aRG~~vde~aL~~aL~--~g~i~ 249 (525)
T TIGR01327 221 KGVIIVNCARGGIIDEAALYEALE--EGHVR 249 (525)
T ss_pred CCeEEEEcCCCceeCHHHHHHHHH--cCCee
Confidence 334333333222234556677777 55554
No 348
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=41.71 E-value=70 Score=34.73 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=47.7
Q ss_pred EEEEecCCCCC-ccc---cccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHH--cCCcEEEEEcCCCChHHHH
Q psy3769 348 FVAGVNPKKNG-QKF---EEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIE--SELELVICITEGIPVRDML 419 (974)
Q Consensus 348 ~V~pVnP~~~g-~~i---~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~--~gv~~~vi~s~G~~e~~~~ 419 (974)
.|.-.|++... +.. .|...+.+..++.+ ..|++++++++..+.+++++... .+=+.+|=+.+|++-+..+
T Consensus 11 ~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~ 86 (245)
T TIGR00112 11 DIIVINRSPEKLAALAKELGIVASSDAQEAVK--EADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLS 86 (245)
T ss_pred eEEEEcCCHHHHHHHHHHcCcEEeCChHHHHh--hCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHH
Confidence 46666665310 111 36667778888765 78999999999999999988863 2225566677898865544
No 349
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.20 E-value=1e+02 Score=30.77 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=59.3
Q ss_pred Ecccc-ccCcccccchhhhh-ccCCCCceEEEEecCCCCCccccccccccchhhhc---ccCCCcEEEEEecc----hhH
Q psy3769 321 VNIFG-ITGKTGRFHTNLCL-NYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAK---NETGATVSVIYVPA----IFA 391 (974)
Q Consensus 321 vni~G-~~~k~G~~v~~~l~-~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip---~~~~vDlavi~vp~----~~v 391 (974)
+.-.| .....|..++.+++ +.||+ ++++ .. +.|-+|+. -++.+|.++++.-. +.+
T Consensus 17 vak~GlDgHd~gakvia~~l~d~Gfe---Vi~~---g~----------~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~ 80 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALADAGFE---VINL---GL----------FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLV 80 (143)
T ss_pred EeccCccccccchHHHHHHHHhCCce---EEec---CC----------cCCHHHHHHHHHhcCCCEEEEEeccchHHHHH
Confidence 44445 22347777887776 77898 4433 21 12222221 12489999988643 457
Q ss_pred HHHHHHHHHcCCcEEEEEcCCC-ChHHHHHHHHHHhcCCCCc-eEEccCC
Q psy3769 392 TSAIWEAIESELELVICITEGI-PVRDMLILKNKMKKNNSKT-LLLGPNC 439 (974)
Q Consensus 392 ~~~v~e~~~~gv~~~vi~s~G~-~e~~~~~l~~~a~~~~~gi-~viGPnc 439 (974)
+++++.|.++|+..+.++.+|. +.++..++ + ++|+ ++.+|.+
T Consensus 81 ~~lve~lre~G~~~i~v~~GGvip~~d~~~l----~--~~G~~~if~pgt 124 (143)
T COG2185 81 PGLVEALREAGVEDILVVVGGVIPPGDYQEL----K--EMGVDRIFGPGT 124 (143)
T ss_pred HHHHHHHHHhCCcceEEeecCccCchhHHHH----H--HhCcceeeCCCC
Confidence 8899999999999987677774 44443333 2 4555 5777754
No 350
>CHL00194 ycf39 Ycf39; Provisional
Probab=41.02 E-value=33 Score=38.52 Aligned_cols=83 Identities=18% Similarity=0.105 Sum_probs=50.0
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEec-CCCCCcc--cccccc-------ccchhhhcccCCCcEEEEEecch---
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVN-PKKNGQK--FEEIPI-------FDTVKNAKNETGATVSVIYVPAI--- 389 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVn-P~~~g~~--i~G~~~-------y~sl~dip~~~~vDlavi~vp~~--- 389 (974)
|.|.+|..|..+++.|++.|++ +...+. +.. ... -.|+.. ..++.++.+ .+|.++-+++..
T Consensus 5 VtGatG~iG~~lv~~Ll~~g~~---V~~l~R~~~~-~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~~ 78 (317)
T CHL00194 5 VIGATGTLGRQIVRQALDEGYQ---VRCLVRNLRK-ASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPSD 78 (317)
T ss_pred EECCCcHHHHHHHHHHHHCCCe---EEEEEcChHH-hhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCCC
Confidence 5799999999999999998987 333332 211 011 112222 233444444 688776654321
Q ss_pred ----------hHHHHHHHHHHcCCcEEEEEcC
Q psy3769 390 ----------FATSAIWEAIESELELVICITE 411 (974)
Q Consensus 390 ----------~v~~~v~e~~~~gv~~~vi~s~ 411 (974)
....+++.|.+.|++.+|.+|+
T Consensus 79 ~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 79 LYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred ccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 1245677777889988776665
No 351
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=40.92 E-value=90 Score=35.87 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=48.8
Q ss_pred cccchhhhhccCCCCceEEEEecCCCCC--------ccccccccccchhhhcccCCCcEEEEEecchh-HHHHHHHHHHc
Q psy3769 331 GRFHTNLCLNYGNGKKAFVAGVNPKKNG--------QKFEEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAIWEAIES 401 (974)
Q Consensus 331 G~~v~~~l~~~g~~g~~~V~pVnP~~~g--------~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~e~~~~ 401 (974)
|..+..+|.+.|++ |+.++++... -.-.|+.+..+..++.. ..|++++++|... +.++++++...
T Consensus 32 G~~MA~~La~aG~~----V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~--~ADvVIlaVP~~~~v~~Vl~~L~~~ 105 (342)
T PRK12557 32 GSRMAIEFAEAGHD----VVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK--HGEIHILFTPFGKKTVEIAKNILPH 105 (342)
T ss_pred HHHHHHHHHhCCCe----EEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh--CCCEEEEECCCcHHHHHHHHHHHhh
Confidence 34455567777765 6666665310 01247777778777755 7899999999988 78888776653
Q ss_pred -CCcEEEEEcCCCC
Q psy3769 402 -ELELVICITEGIP 414 (974)
Q Consensus 402 -gv~~~vi~s~G~~ 414 (974)
.-+.+|+-.+...
T Consensus 106 L~~g~IVId~ST~~ 119 (342)
T PRK12557 106 LPENAVICNTCTVS 119 (342)
T ss_pred CCCCCEEEEecCCC
Confidence 2233444444444
No 352
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=40.85 E-value=1.3e+02 Score=32.06 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=44.9
Q ss_pred HHHHHHHhhhhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhh
Q psy3769 682 TIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFS---SIIILCSILLGYLSGNMI 758 (974)
Q Consensus 682 ~I~~~D~~fs~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~~~---~l~~~~~~~l~~ig~~l~ 758 (974)
.+.+.=++.|+|+.-+.++..-..-.-.-...+.+|.+-+ +|-+...++.+.+.++- +-++++..+|.++|++|+
T Consensus 2 ~i~llaials~Daf~vgi~~G~~~~~~~~~~~l~ig~~~~--~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi 79 (206)
T TIGR02840 2 SLLLLAFAVSLDSFGVGIAYGLRKIKIPFLSNLIIAVISG--LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWII 79 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 3455567889998877766543100000112223333222 34444444555554433 457899999999999999
Q ss_pred hcc
Q psy3769 759 FSD 761 (974)
Q Consensus 759 ~~~ 761 (974)
.+.
T Consensus 80 ~~~ 82 (206)
T TIGR02840 80 YNA 82 (206)
T ss_pred HHH
Confidence 965
No 353
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=40.64 E-value=63 Score=36.91 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=57.1
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCcccc-ccccccchhhhcccCCCcEEEEEecchh-HHHHHH-HHH
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFE-EIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAIW-EAI 399 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~-G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~-e~~ 399 (974)
|+| .|..|..+.+.+...|++ |+..+|.. +... ......+++++.+ ..|++++++|... +...+. +..
T Consensus 151 IIG-~G~IG~~vA~~L~~~G~~----V~~~d~~~--~~~~~~~~~~~~l~ell~--~aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 151 IIG-TGRIGAATAKIYAGFGAT----ITAYDAYP--NKDLDFLTYKDSVKEAIK--DADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred EEC-CCHHHHHHHHHHHhCCCE----EEEEeCCh--hHhhhhhhccCCHHHHHh--cCCEEEEeCCCcHHHHHHHhHHHH
Confidence 445 356788888888888876 66666654 2222 2333358888876 8999999999754 333332 333
Q ss_pred HcCCcEEEEEcCCCC-hHHHHHHHHHHhcCCCCce
Q psy3769 400 ESELELVICITEGIP-VRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 400 ~~gv~~~vi~s~G~~-e~~~~~l~~~a~~~~~gi~ 433 (974)
+.=-+.++++..+-. .-++..|.+..+ +..+.
T Consensus 222 ~~mk~gavlIN~aRG~~vd~~aL~~aL~--~g~i~ 254 (330)
T PRK12480 222 DHVKKGAILVNAARGAVINTPDLIAAVN--DGTLL 254 (330)
T ss_pred hcCCCCcEEEEcCCccccCHHHHHHHHH--cCCee
Confidence 321123344444322 224555667666 55443
No 354
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=40.42 E-value=68 Score=32.32 Aligned_cols=73 Identities=8% Similarity=0.088 Sum_probs=50.4
Q ss_pred ceEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCEEEEeCCCCCCCCCCCceeeccccCeEEEe-cCCcEeEEEEEee
Q psy3769 886 KLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVEN-IHGKLLGTVTEII 964 (974)
Q Consensus 886 ~~~~~~v~~~r~~~~~~lvkf~gi~~re~Ae~L~g~~l~v~~~~lp~ll~e~e~y~~DLiG~~V~d-~~g~~lG~V~~v~ 964 (974)
...-+.+++-.++.....+.+..|.+.-+ ++--+++|.+..-.. .+. +..++.-+++.. ++|+.||.|+||+
T Consensus 35 rvl~flvnkggwfh~h~~lp~~~i~Sig~----k~Imi~vp~~~~~~~-~ns--~~ye~m~mk~~lt~dG~iLGmveDVy 107 (176)
T COG3881 35 RVLGFLVNKGGWFHKHCCLPVKNIVSIGS----KMIMIYVPYKGSFIR-FNS--FTYEIMNMKVILTYDGTILGMVEDVY 107 (176)
T ss_pred eEEEEEEecCcEEeeeeeeeecceeeecc----ceEEEeccccceecc-cCc--hhhHhhcCceEeccCCcEeeeeeEEE
Confidence 34456666666666667788888877765 445678887765543 344 444666677765 7899999999997
Q ss_pred c
Q psy3769 965 Q 965 (974)
Q Consensus 965 ~ 965 (974)
-
T Consensus 108 F 108 (176)
T COG3881 108 F 108 (176)
T ss_pred E
Confidence 4
No 355
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=40.36 E-value=82 Score=36.26 Aligned_cols=110 Identities=20% Similarity=0.239 Sum_probs=64.0
Q ss_pred ccccccCcccccchhhhhc-cCCCCceEEE-EecCCCCCcccc--c--ccccc-chhhhcccCCCcEEEEEecchhHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLN-YGNGKKAFVA-GVNPKKNGQKFE--E--IPIFD-TVKNAKNETGATVSVIYVPAIFATSA 394 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~-~g~~g~~~V~-pVnP~~~g~~i~--G--~~~y~-sl~dip~~~~vDlavi~vp~~~v~~~ 394 (974)
.|+|.|+-.|..+++-|.+ ..|.- +.+. ...++..|+.+. | +.+.+ +..+. . .+|+++.++|.+...+.
T Consensus 9 aIvGATG~vG~ell~lL~~h~~f~v-~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~-~--~~Divf~a~~~~~s~~~ 84 (347)
T PRK06728 9 AVVGATGAVGQKIIELLEKETKFNI-AEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF-E--GVDIAFFSAGGEVSRQF 84 (347)
T ss_pred EEEeCCCHHHHHHHHHHHHCCCCCc-ccEEEEECcccCCCCeeeCCcceEEEeCCHHHh-c--CCCEEEECCChHHHHHH
Confidence 3578888888888877773 44552 1233 233333344431 1 11111 11222 2 68999999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCChHH----------HHHHHHHHhcCCCCceEEccCCccc
Q psy3769 395 IWEAIESELELVICITEGIPVRD----------MLILKNKMKKNNSKTLLLGPNCPGL 442 (974)
Q Consensus 395 v~e~~~~gv~~~vi~s~G~~e~~----------~~~l~~~a~~~~~gi~viGPnc~G~ 442 (974)
..++.++|++ +|=.|+-|..+. .+.+. . .++ -+-.|||.-.
T Consensus 85 ~~~~~~~G~~-VID~Ss~fR~~~~vplvvPEvN~e~i~---~--~~~-iIanPnC~tt 135 (347)
T PRK06728 85 VNQAVSSGAI-VIDNTSEYRMAHDVPLVVPEVNAHTLK---E--HKG-IIAVPNCSAL 135 (347)
T ss_pred HHHHHHCCCE-EEECchhhcCCCCCCeEeCCcCHHHHh---c--cCC-EEECCCCHHH
Confidence 9999999865 344555554221 12222 2 235 5889999743
No 356
>PLN02235 ATP citrate (pro-S)-lyase
Probab=40.29 E-value=73 Score=37.52 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=70.0
Q ss_pred CCEEEEeCChhhHHHHHHHHHHcC--CceEEEeecCCCCCCCCCHHHHHHHhh----hCCCccEEEEEEccCCCchHH-H
Q psy3769 461 GRIGVVSRSGTLTYEVVCQLTELG--FGQSSAVGIGGDPINGLKYIDILKLFN----EDQNTDAVIMIGEIGGLDEIY-A 533 (974)
Q Consensus 461 G~va~vSQSG~~~~~~~~~~~~~g--~g~s~~vs~Gn~a~~dv~~~d~l~~l~----~Dp~t~~I~ly~E~~g~~~~~-~ 533 (974)
|+|+.+.--|+++.+.++.....| =-..-|.-+|+.+ ..-.+.++++-+. .||+.++|++-+=+.=.+..+ +
T Consensus 270 G~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA 348 (423)
T PLN02235 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVA 348 (423)
T ss_pred CeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhh
Confidence 999999999999999999998888 4588889999876 4666777777776 799999997765432111122 2
Q ss_pred ---HHHHHh----c-----CCCCEEEEecccCCCCCCC
Q psy3769 534 ---ANWIKK----N-----MKKPVIGFIAGITAPPGKR 559 (974)
Q Consensus 534 ---~~f~~~----~-----~~KPVv~lk~Grs~~~g~~ 559 (974)
+-.+++ . .++|||+=..|...+.|.+
T Consensus 349 ~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~ 386 (423)
T PLN02235 349 ATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLA 386 (423)
T ss_pred hhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHH
Confidence 233343 1 3689999777776545554
No 357
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=39.95 E-value=63 Score=33.57 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=38.3
Q ss_pred HHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh--cCCCCEEEEec---ccC
Q psy3769 503 YIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK--NMKKPVIGFIA---GIT 553 (974)
Q Consensus 503 ~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~--~~~KPVv~lk~---Grs 553 (974)
+...++.+.+|+ .+.|++++.+-|.....+.+++.+ ...||||+.-. |..
T Consensus 18 l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~A 72 (187)
T cd07020 18 LERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARA 72 (187)
T ss_pred HHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCc
Confidence 566777777766 899999999887765666776665 67899999876 654
No 358
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=39.80 E-value=86 Score=33.40 Aligned_cols=99 Identities=11% Similarity=0.140 Sum_probs=62.2
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCC
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESEL 403 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv 403 (974)
-+..-..+..+.+.|.+.|++- .=.+.|-.. .+.++.++-+..+ + ++|-.--=--++.++++.++|.
T Consensus 20 r~~~~e~a~~~a~Ali~gGi~~--IEITl~sp~---------a~e~I~~l~~~~p-~-~lIGAGTVL~~~q~~~a~~aGa 86 (211)
T COG0800 20 RGDDVEEALPLAKALIEGGIPA--IEITLRTPA---------ALEAIRALAKEFP-E-ALIGAGTVLNPEQARQAIAAGA 86 (211)
T ss_pred EeCCHHHHHHHHHHHHHcCCCe--EEEecCCCC---------HHHHHHHHHHhCc-c-cEEccccccCHHHHHHHHHcCC
Confidence 3433334555677888999984 224444332 4456666654222 3 3333222233678999999999
Q ss_pred cEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccCc
Q psy3769 404 ELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPEE 447 (974)
Q Consensus 404 ~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~ 447 (974)
+. ++|.|+. .++.+.|+ ++|+.+ |+|+++|..
T Consensus 87 ~f--iVsP~~~----~ev~~~a~--~~~ip~----~PG~~TptE 118 (211)
T COG0800 87 QF--IVSPGLN----PEVAKAAN--RYGIPY----IPGVATPTE 118 (211)
T ss_pred CE--EECCCCC----HHHHHHHH--hCCCcc----cCCCCCHHH
Confidence 85 8899986 35678898 899865 567777754
No 359
>PRK11469 hypothetical protein; Provisional
Probab=39.57 E-value=1.9e+02 Score=30.33 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhchHHHHHHhc--ccccccccch--hhHHHHHHH-HHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy3769 680 IKTIIFADLIMSIDNVLAIAGTA--SQISNKYQML--LVIIGILFS-IPIII-FGSKLVLILIEKFSSIIILCSILLGYL 753 (974)
Q Consensus 680 v~~I~~~D~~fs~Dsv~a~~~~t--~~~~~~~~~~--li~~g~~~~-i~~l~-~~~~~~~~~~~~~~~l~~~~~~~l~~i 753 (974)
+.++.+.=+..|+|+.-+.++.- ....+-.+++ ..++|.+=+ .|.+- .+...+.+++..+. .+++..+|.++
T Consensus 3 ~~~i~llaialsmDaF~v~ia~G~~~~~~~~~~~~~~~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~--~~i~~~lL~~l 80 (188)
T PRK11469 3 ITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFVLEWN--HWIAFVLLIFL 80 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 34666777889999988777654 1100000111 112222222 12221 23334556666644 79999999999
Q ss_pred HHHhhhcc
Q psy3769 754 SGNMIFSD 761 (974)
Q Consensus 754 g~~l~~~~ 761 (974)
|.+|+.|.
T Consensus 81 G~~mi~e~ 88 (188)
T PRK11469 81 GGRMIIEG 88 (188)
T ss_pred HHHHHHHH
Confidence 99999965
No 360
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=39.14 E-value=87 Score=39.64 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=60.2
Q ss_pred CeEEEEEccccccCcccccchhhhh-ccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEe----cch
Q psy3769 315 NLKTILVNIFGITGKTGRFHTNLCL-NYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYV----PAI 389 (974)
Q Consensus 315 ~~~~i~vni~G~~~k~G~~v~~~l~-~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~v----p~~ 389 (974)
+.++++.++-+...+.|..+.++++ ..||. ++++. .. .... ..++.+. +..+|+++||. ..+
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~Gfe---V~~~~--~~--~s~e-----~~v~aa~-~~~a~ivvlcs~d~~~~e 648 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFD---VDIGP--LF--QTPE-----EAARQAV-ENDVHVVGVSSLAAGHKT 648 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCee---EecCC--CC--CCHH-----HHHHHHH-HcCCCEEEEeccchhhHH
Confidence 3455554554444456666777776 56787 32221 10 0000 1122222 34899999995 445
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCC-ChHHHHHHHHHHhcCCCCc-eEEccCC
Q psy3769 390 FATSAIWEAIESELELVICITEGI-PVRDMLILKNKMKKNNSKT-LLLGPNC 439 (974)
Q Consensus 390 ~v~~~v~e~~~~gv~~~vi~s~G~-~e~~~~~l~~~a~~~~~gi-~viGPnc 439 (974)
.++++++++-++|.+.+.|+.+|. +.++. +..+ +.|+ .++.|.|
T Consensus 649 ~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~----~~l~--~aGvD~~i~~g~ 694 (714)
T PRK09426 649 LVPALIEALKKLGREDIMVVVGGVIPPQDY----DFLY--EAGVAAIFGPGT 694 (714)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCCChhhH----HHHH--hCCCCEEECCCC
Confidence 677888888888977676777776 43332 3345 6677 3666665
No 361
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=39.12 E-value=67 Score=33.74 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=37.6
Q ss_pred CCCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeCCHHHHHHHHHHHHhccccccccCCCCCceeE
Q psy3769 16 NVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFC 95 (974)
Q Consensus 16 GIpvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~~~~~ 95 (974)
.+|.-+-....+..|-. .. ..+|+|+|.--.|+|-||. .++|.++.++.+.-+ ...- .-
T Consensus 30 ~FPLieQt~ypnh~em~---s~-~~fPvVvKvG~~h~G~GKv----kv~n~~~~qDi~sll-~~~~------------~Y 88 (203)
T PF02750_consen 30 KFPLIEQTYYPNHREML---SA-PRFPVVVKVGHAHAGMGKV----KVDNQQDFQDIASLL-AITK------------DY 88 (203)
T ss_dssp TS-B---EEESSGGGGC---S--SSSSEEEEESS-STTTTEE----EE-SHHHHHHHHHHH-HHHT------------S-
T ss_pred ccccceeeecCChhhhc---cC-CCCCEEEEEccccCceeEE----EEccHHHHHHHHHHH-HhcC------------ce
Confidence 45554444444544322 11 2389999997667666553 678988888765543 2211 25
Q ss_pred EEEEEEeccceeEEE
Q psy3769 96 VLIEEYIDIKKELYI 110 (974)
Q Consensus 96 vLVee~v~~~~E~yl 110 (974)
+.+|++++...++.+
T Consensus 89 ~T~EPfId~kyDirv 103 (203)
T PF02750_consen 89 ATTEPFIDAKYDIRV 103 (203)
T ss_dssp EEEEE---EEEEEEE
T ss_pred EEeeccccceeEEEE
Confidence 678999876555444
No 362
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=38.97 E-value=61 Score=31.94 Aligned_cols=49 Identities=10% Similarity=0.094 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCChHH-------HHHHHHHHhcCCCC-ceEEccCCc
Q psy3769 390 FATSAIWEAIESELELVICITEGIPVRD-------MLILKNKMKKNNSK-TLLLGPNCP 440 (974)
Q Consensus 390 ~v~~~v~e~~~~gv~~~vi~s~G~~e~~-------~~~l~~~a~~~~~g-i~viGPnc~ 440 (974)
.+.++++++.+.|++.++++.-||.-+. ..+.++.++ ++| ..+.-..|+
T Consensus 78 ~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~--~~G~~~~~rvp~l 134 (135)
T cd00419 78 STDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAE--EAGGENYRRVPCL 134 (135)
T ss_pred CHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHH--HcCCceEEEcCCC
Confidence 5789999999999999999999986432 245677788 777 666655564
No 363
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=38.79 E-value=58 Score=37.18 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=32.1
Q ss_pred CCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCCh
Q psy3769 378 GATVSVIYVPAIFATSAIWEAIESELELVICITEGIPV 415 (974)
Q Consensus 378 ~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e 415 (974)
.+|++++++|.....+.+.+..+.|++ +|=+|+.|.-
T Consensus 70 ~~DvvFlalPhg~s~~~v~~l~~~g~~-VIDLSadfR~ 106 (349)
T COG0002 70 ECDVVFLALPHGVSAELVPELLEAGCK-VIDLSADFRL 106 (349)
T ss_pred cCCEEEEecCchhHHHHHHHHHhCCCe-EEECCccccc
Confidence 589999999999999999999999999 6777766543
No 364
>PRK05568 flavodoxin; Provisional
Probab=38.78 E-value=1.9e+02 Score=28.12 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=56.3
Q ss_pred eEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecch------
Q psy3769 316 LKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAI------ 389 (974)
Q Consensus 316 ~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~------ 389 (974)
+..++..-.|.|.+....+.+.+.+.|..- .++.++-. ...++. .-|..++..|--
T Consensus 4 ~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v--~~~~~~~~-------------~~~~~~---~~d~iilgsp~y~~~~~~ 65 (142)
T PRK05568 4 INIIYWSGTGNTEAMANLIAEGAKENGAEV--KLLNVSEA-------------SVDDVK---GADVVALGSPAMGDEVLE 65 (142)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHCCCeE--EEEECCCC-------------CHHHHH---hCCEEEEECCccCccccc
Confidence 344444445566666666666665556542 23333211 112443 468888887742
Q ss_pred --hHHHHHHHHHH--cCCcEEEEEcCCCC-hHHHHHHHHHHhcCCCCceEEcc
Q psy3769 390 --FATSAIWEAIE--SELELVICITEGIP-VRDMLILKNKMKKNNSKTLLLGP 437 (974)
Q Consensus 390 --~v~~~v~e~~~--~gv~~~vi~s~G~~-e~~~~~l~~~a~~~~~gi~viGP 437 (974)
.+.+.+++... .|-+.+++-+.|.+ ......+.+..+ +.|.+++++
T Consensus 66 ~~~~~~f~~~~~~~~~~k~~~~f~t~G~~~~~~~~~~~~~l~--~~g~~~~~~ 116 (142)
T PRK05568 66 EGEMEPFVESISSLVKGKKLVLFGSYGWGDGEWMRDWVERME--GYGANLVNE 116 (142)
T ss_pred chhHHHHHHHhhhhhCCCEEEEEEccCCCCChHHHHHHHHHH--HCCCEEeCC
Confidence 34455555432 35455555555654 223455667777 889999988
No 365
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=38.73 E-value=98 Score=36.11 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=57.2
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchh-----HHHHHH-
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIF-----ATSAIW- 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~-----v~~~v~- 396 (974)
|+| .|..|..+.+.+...|++ |...+|.. ....+...|.+++++.+ ..|++++.+|-.. +...+.
T Consensus 121 IIG-~G~IG~~va~~l~a~G~~----V~~~Dp~~--~~~~~~~~~~~l~ell~--~aDiV~lh~Plt~~g~~~T~~li~~ 191 (381)
T PRK00257 121 VVG-AGHVGGRLVRVLRGLGWK----VLVCDPPR--QEAEGDGDFVSLERILE--ECDVISLHTPLTKEGEHPTRHLLDE 191 (381)
T ss_pred EEC-CCHHHHHHHHHHHHCCCE----EEEECCcc--cccccCccccCHHHHHh--hCCEEEEeCcCCCCccccccccCCH
Confidence 345 356788888999888886 77778864 33334345779999976 7999999999632 223332
Q ss_pred HHHH-cCCcEEEEEcCCCC-hHHHHHHHHHHh
Q psy3769 397 EAIE-SELELVICITEGIP-VRDMLILKNKMK 426 (974)
Q Consensus 397 e~~~-~gv~~~vi~s~G~~-e~~~~~l~~~a~ 426 (974)
+..+ ..-. ++++..+-. --+++.|.+..+
T Consensus 192 ~~l~~mk~g-ailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 192 AFLASLRPG-AWLINASRGAVVDNQALREALL 222 (381)
T ss_pred HHHhcCCCC-eEEEECCCCcccCHHHHHHHHH
Confidence 2222 2333 455554432 224455666665
No 366
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.68 E-value=1.7e+02 Score=29.00 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=41.3
Q ss_pred CCCcEEEEEe----cchhHHHHHHHHHHcCCcEEEEEcCC---CChHHHHHHHHHHhcCCCCce-EEccCC
Q psy3769 377 TGATVSVIYV----PAIFATSAIWEAIESELELVICITEG---IPVRDMLILKNKMKKNNSKTL-LLGPNC 439 (974)
Q Consensus 377 ~~vDlavi~v----p~~~v~~~v~e~~~~gv~~~vi~s~G---~~e~~~~~l~~~a~~~~~gi~-viGPnc 439 (974)
+.+|++-+.. .-...+++++++.++|.+...|+-+| +++++..+..+.++ +.|+. +.||..
T Consensus 51 ~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~--~~Gv~~vF~pgt 119 (134)
T TIGR01501 51 TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFK--EMGFDRVFAPGT 119 (134)
T ss_pred cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHH--HcCCCEEECcCC
Confidence 4788766553 33456778888888888776677777 46666554556677 77864 777765
No 367
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=38.48 E-value=65 Score=34.99 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=69.4
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCcc--ccccccccchhhhcccC-CCcEEEEEecch-hHHHHHHHHHHcCC
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK--FEEIPIFDTVKNAKNET-GATVSVIYVPAI-FATSAIWEAIESEL 403 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~--i~G~~~y~sl~dip~~~-~vDlavi~vp~~-~v~~~v~e~~~~gv 403 (974)
++.|..+.+++++.|-+- +.|-+||.. -++ -.|.+.-.|+.++.... +|-.+=+.+|+. -+..++++....==
T Consensus 9 GrMG~n~v~rl~~~ghdv--V~yD~n~~a-v~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~ 85 (300)
T COG1023 9 GRMGANLVRRLLDGGHDV--VGYDVNQTA-VEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLS 85 (300)
T ss_pred chhhHHHHHHHHhCCCeE--EEEcCCHHH-HHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcC
Confidence 578999999999999885 568899964 111 23666667777665432 577888999998 67778888876422
Q ss_pred cEEEEEcCCCCh-HHHHHHHHHHhcCCCCceEEccCC
Q psy3769 404 ELVICITEGIPV-RDMLILKNKMKKNNSKTLLLGPNC 439 (974)
Q Consensus 404 ~~~vi~s~G~~e-~~~~~l~~~a~~~~~gi~viGPnc 439 (974)
+.=+++-.|-+. .+..+-.+... ++|+.++--.+
T Consensus 86 ~GDivIDGGNS~y~Ds~rr~~~l~--~kgi~flD~GT 120 (300)
T COG1023 86 AGDIVIDGGNSNYKDSLRRAKLLA--EKGIHFLDVGT 120 (300)
T ss_pred CCCEEEECCccchHHHHHHHHHHH--hcCCeEEeccC
Confidence 223666666432 12222233445 78888875443
No 368
>PRK10263 DNA translocase FtsK; Provisional
Probab=38.18 E-value=4e+02 Score=36.01 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=16.1
Q ss_pred eEEEehhHHHHHHHHHHHHHHH
Q psy3769 616 KGIIFGTFGAIAIRIILVIFSI 637 (974)
Q Consensus 616 ~ai~~g~~ga~~~R~~~~~~~~ 637 (974)
..-+.|..||.+-.+++-++|.
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFGl 81 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFGV 81 (1355)
T ss_pred cccccchHHHHHHHHHHHHHhH
Confidence 3456799999988877776664
No 369
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.72 E-value=59 Score=37.71 Aligned_cols=51 Identities=25% Similarity=0.327 Sum_probs=38.6
Q ss_pred ccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHH--cCC-c-EEEEEcCCCCh
Q psy3769 363 EIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIE--SEL-E-LVICITEGIPV 415 (974)
Q Consensus 363 G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~--~gv-~-~~vi~s~G~~e 415 (974)
.+.+..++.++.+ ..|++++++|+..+.+++++... .-- + .+|.++.|+..
T Consensus 80 ni~~tsdl~eav~--~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 80 NIVAVSDLKEAVE--DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred ceEEecCHHHHHh--cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 4666677877765 78999999999999999999875 211 2 45678889863
No 370
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=37.45 E-value=27 Score=35.88 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=56.6
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCcc---ccccccccchhhhcccCCCcEEEEEecchh-HHHHHH-H-
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK---FEEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAIW-E- 397 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~---i~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~-e- 397 (974)
+| .|+.|..+.+.+..+|++ |+.++|...... -.+. .|.+++|+.+ ..|++++.+|... +...+. +
T Consensus 42 iG-~G~IG~~vA~~l~~fG~~----V~~~d~~~~~~~~~~~~~~-~~~~l~ell~--~aDiv~~~~plt~~T~~li~~~~ 113 (178)
T PF02826_consen 42 IG-YGRIGRAVARRLKAFGMR----VIGYDRSPKPEEGADEFGV-EYVSLDELLA--QADIVSLHLPLTPETRGLINAEF 113 (178)
T ss_dssp ES-TSHHHHHHHHHHHHTT-E----EEEEESSCHHHHHHHHTTE-EESSHHHHHH--H-SEEEE-SSSSTTTTTSBSHHH
T ss_pred EE-EcCCcCeEeeeeecCCce----eEEecccCChhhhcccccc-eeeehhhhcc--hhhhhhhhhccccccceeeeeee
Confidence 45 357888899999988875 888888862111 2244 5779999977 7999999999522 111111 1
Q ss_pred HHHcCCcEEEEEcCCCCh-HHHHHHHHHHhcCCCCce
Q psy3769 398 AIESELELVICITEGIPV-RDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 398 ~~~~gv~~~vi~s~G~~e-~~~~~l~~~a~~~~~gi~ 433 (974)
..+..-.+ +++.-+-.+ -+++.|.+..+ +..+.
T Consensus 114 l~~mk~ga-~lvN~aRG~~vde~aL~~aL~--~g~i~ 147 (178)
T PF02826_consen 114 LAKMKPGA-VLVNVARGELVDEDALLDALE--SGKIA 147 (178)
T ss_dssp HHTSTTTE-EEEESSSGGGB-HHHHHHHHH--TTSEE
T ss_pred eeccccce-EEEeccchhhhhhhHHHHHHh--hccCc
Confidence 11223233 444443322 24556777777 55544
No 371
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=37.32 E-value=1e+02 Score=34.08 Aligned_cols=169 Identities=14% Similarity=0.164 Sum_probs=82.1
Q ss_pred CCceeeecCCCCCHHHHHHHHHHHhh---cCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccc
Q psy3769 287 EPANFLDIGGGATIKTITEAFKIMMQ---QNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEE 363 (974)
Q Consensus 287 ~panfld~GG~a~~~~v~~a~~~il~---~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G 363 (974)
-|.||.+ ++...+..+.+ ||++|+|+||= +.+|.. ..++...+.-=+ .+.-..+-.
T Consensus 39 yPdnf~~--------e~EttIskI~~lAdDp~mKaIVv~q-~vpGt~--~af~kIkekRpD---Il~ia~~~~------- 97 (275)
T PF12683_consen 39 YPDNFMS--------EQETTISKIVSLADDPDMKAIVVSQ-AVPGTA--EAFRKIKEKRPD---ILLIAGEPH------- 97 (275)
T ss_dssp --TTGGG--------CHHHHHHHHHGGGG-TTEEEEEEE--SS---H--HHHHHHHHH-TT---SEEEESS---------
T ss_pred CCCcccc--------hHHHHHHHHHHhccCCCccEEEEeC-CCcchH--HHHHHHHhcCCC---eEEEcCCCc-------
Confidence 4888875 24445666666 99999997762 233322 133455543212 222222221
Q ss_pred cccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcC--CCChHH----HHHHHHHHhcCCCCceEEc-
Q psy3769 364 IPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITE--GIPVRD----MLILKNKMKKNNSKTLLLG- 436 (974)
Q Consensus 364 ~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~--G~~e~~----~~~l~~~a~~~~~gi~viG- 436 (974)
.+...+-+ ..|+++-.-....-..+++.|-+.|++..|-+|- ..+.+. .+.+.+.|+ +.|+..+-
T Consensus 98 ----EDp~~i~~--~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~--~lGi~fv~~ 169 (275)
T PF12683_consen 98 ----EDPEVISS--AADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACK--DLGIKFVEV 169 (275)
T ss_dssp ----S-HHHHHH--HSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHH--HCT--EEEE
T ss_pred ----CCHHHHhh--ccCeEeccchhhccHHHHHHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHH--HcCCeEEEE
Confidence 24445544 6899988888888888999999999999887762 122111 134678899 89987653
Q ss_pred --cCCc---cccccCccccccCCCCCCCCC-CEEEEeCChhhHHHHHHHHHHcC
Q psy3769 437 --PNCP---GLIVPEEIKIGIMPGNIHKKG-RIGVVSRSGTLTYEVVCQLTELG 484 (974)
Q Consensus 437 --Pnc~---G~~~~~~~~~~~~~~~~~~~G-~va~vSQSG~~~~~~~~~~~~~g 484 (974)
|+=. |+....+.+.--.|...-+-| +++|.+-..++---++..+.+.|
T Consensus 170 taPDP~sd~gv~gaqqfIlE~vp~~i~kYGkdtaff~TN~a~~epllk~~~~~g 223 (275)
T PF12683_consen 170 TAPDPTSDVGVAGAQQFILEDVPKWIKKYGKDTAFFCTNDAMTEPLLKQALEYG 223 (275)
T ss_dssp EE---SSTCHHHHHHHHHHHHHHHHHHHH-S--EEEESSHHHHHHHHHHHHHH-
T ss_pred eCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCceeEEecCccccHHHHHHHHHcC
Confidence 3311 111110000000000000113 58888888888877777666554
No 372
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=37.27 E-value=76 Score=35.48 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=60.7
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEecCCCCCccc-----ccccc--ccchhhhcccCCCcEEEEEecchhHHHHHH
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF-----EEIPI--FDTVKNAKNETGATVSVIYVPAIFATSAIW 396 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i-----~G~~~--y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 396 (974)
+|. +..|..+.+.|...|++ |+-+|++. +.. .|... +.++.+.-. ..|+++.++|...+....-
T Consensus 157 iG~-G~iG~avA~~L~~~G~~----V~v~~R~~--~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P~~ii~~~~l 227 (287)
T TIGR02853 157 LGF-GRTGMTIARTFSALGAR----VFVGARSS--ADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIPALVLTADVL 227 (287)
T ss_pred EcC-hHHHHHHHHHHHHCCCE----EEEEeCCH--HHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCChHHhCHHHH
Confidence 553 45788888899888865 66667664 221 24333 234555544 7899999999764432222
Q ss_pred HHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE-ccCCccccccC
Q psy3769 397 EAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL-GPNCPGLIVPE 446 (974)
Q Consensus 397 e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi-GPnc~G~~~~~ 446 (974)
+..+. .++++--+....+.. + +.|+ +.|++.+ -|+-+|.+-|.
T Consensus 228 ~~~k~---~aliIDlas~Pg~td-f-~~Ak--~~G~~a~~~~glPg~~ap~ 271 (287)
T TIGR02853 228 SKLPK---HAVIIDLASKPGGTD-F-EYAK--KRGIKALLAPGLPGIVAPK 271 (287)
T ss_pred hcCCC---CeEEEEeCcCCCCCC-H-HHHH--HCCCEEEEeCCCCcccCch
Confidence 22222 234443222211111 2 5678 8898755 47777766553
No 373
>KOG2927|consensus
Probab=37.05 E-value=43 Score=37.97 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=32.3
Q ss_pred HHHHHHHHcc-cCCccccceEEEehhHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3769 598 DAIIIALACR-NLQPNIRTKGIIFGTFGAIAIRIILVIFSINLL--NLKYIKII 648 (974)
Q Consensus 598 n~~vial~~~-~lp~~~r~~ai~~g~~ga~~~R~~~~~~~~~ll--~~~~~~~~ 648 (974)
-++++++.+. -.|...|+.+..+.+++++++-+++.++++.++ .+.|+.+-
T Consensus 198 vl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 198 VLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred HHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555444 457777877777777676777777777777666 34455443
No 374
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.93 E-value=88 Score=33.16 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=59.1
Q ss_pred cccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCc
Q psy3769 325 GITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELE 404 (974)
Q Consensus 325 G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~ 404 (974)
+.+......+.+.|.+.|++- + =|.-+. -.++..++++-++. +|+ .|-.--=..++.+++|.+.|.+
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~---i-Eit~~t-------p~a~~~I~~l~~~~-~~~-~vGAGTVl~~e~a~~ai~aGA~ 78 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPA---I-EITLRT-------PAALDAIRAVAAEV-EEA-IVGAGTILNAKQFEDAAKAGSR 78 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCE---E-EEeCCC-------ccHHHHHHHHHHHC-CCC-EEeeEeCcCHHHHHHHHHcCCC
Confidence 333334556778888999883 2 121111 12445566664322 353 3333333346678999999999
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccC
Q psy3769 405 LVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPE 446 (974)
Q Consensus 405 ~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~ 446 (974)
. ++|.++. .++.+.|+ ++|+..+ |.| ++|.
T Consensus 79 F--ivSP~~~----~~vi~~a~--~~~i~~i-PG~---~Tpt 108 (201)
T PRK06015 79 F--IVSPGTT----QELLAAAN--DSDVPLL-PGA---ATPS 108 (201)
T ss_pred E--EECCCCC----HHHHHHHH--HcCCCEe-CCC---CCHH
Confidence 5 7888876 35678899 9999887 444 4554
No 375
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=36.39 E-value=34 Score=31.91 Aligned_cols=70 Identities=11% Similarity=0.090 Sum_probs=39.3
Q ss_pred cccccccccc-hhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEc
Q psy3769 360 KFEEIPIFDT-VKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLG 436 (974)
Q Consensus 360 ~i~G~~~y~s-l~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viG 436 (974)
.+..+.+... +++..+....+-. +.+|.++ .+++..|..+++++ +++++|...++ ++++.|+ +.++.++-
T Consensus 20 ~~~~v~v~a~~~~~~~~~~~~~~l-vIt~gdR-~di~~~a~~~~i~~-iIltg~~~~~~--~v~~la~--~~~i~vi~ 90 (105)
T PF07085_consen 20 RVGKVVVGAMSLSDFLEYLKPGDL-VITPGDR-EDIQLAAIEAGIAC-IILTGGLEPSE--EVLELAK--ELGIPVIS 90 (105)
T ss_dssp EESEEEE-SS-HHHHHHCHHTTEE-EEEETT--HHHHHHHCCTTECE-EEEETT----H--HHHHHHH--HHT-EEEE
T ss_pred EEeeEEEEECCHHHHHhhcCCCeE-EEEeCCc-HHHHHHHHHhCCCE-EEEeCCCCCCH--HHHHHHH--HCCCEEEE
Confidence 3444444433 4444322233444 4445555 78999999999997 77787765443 4578888 88877764
No 376
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed
Probab=36.23 E-value=36 Score=29.95 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.2
Q ss_pred CeEEEecCCcEeEEEEEeecC
Q psy3769 946 DCIVENIHGKLLGTVTEIIQN 966 (974)
Q Consensus 946 G~~V~d~~g~~lG~V~~v~~~ 966 (974)
|..|+|++.+.+|+|.||+=.
T Consensus 27 n~~V~~~~~~~IGkV~dIfGP 47 (73)
T PRK13149 27 GSVVYDKKLKKIGKVVDVFGP 47 (73)
T ss_pred CCEeECCCCCEeEEEEEEECC
Confidence 889999999999999999854
No 377
>PRK10949 protease 4; Provisional
Probab=36.10 E-value=53 Score=40.82 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=47.3
Q ss_pred CCCCCEEEEeCChhhHHHHHHHHHHcCCceEEE----eecCCCCCCCCC---HHHHHHHhhhCCCccEEEEEEccCCCch
Q psy3769 458 HKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSA----VGIGGDPINGLK---YIDILKLFNEDQNTDAVIMIGEIGGLDE 530 (974)
Q Consensus 458 ~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~----vs~Gn~a~~dv~---~~d~l~~l~~Dp~t~~I~ly~E~~g~~~ 530 (974)
.+.+.+.++.-||.+.-.- . ..-.++.+ .+.+......++ +.+.|+...+||++++|++.+.+.|...
T Consensus 53 ~~~~~vL~ldl~G~lve~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~ 127 (618)
T PRK10949 53 TASRGALLLDISGVIVDKP----S-SSNKLSQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGAD 127 (618)
T ss_pred CCCCeEEEEECCCcccCCC----C-CCCcHHHHhhhhcccCCCccccccHHHHHHHHHHHhcCCCceEEEEEeCCCCCcc
Confidence 4567888999998874210 0 01111111 111111001244 4555666678999999999999874321
Q ss_pred ----HHHHHHHHh--cCCCCEEEE
Q psy3769 531 ----IYAANWIKK--NMKKPVIGF 548 (974)
Q Consensus 531 ----~~~~~f~~~--~~~KPVv~l 548 (974)
.+-++-++. +.+|||+++
T Consensus 128 ~a~~~eI~~ai~~fk~sGKpVvA~ 151 (618)
T PRK10949 128 QPSMQYIGKALREFRDSGKPVYAV 151 (618)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEE
Confidence 122222222 568999997
No 378
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=35.65 E-value=1.6e+02 Score=35.18 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=51.8
Q ss_pred HHHHHHcCCCCCCceeeCC--------HHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEE--eCCHHHHHHHHHHHHh
Q psy3769 9 KEILRKFNVTIPKGILCMN--------VDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKL--AQSLEQVEKYTKKILG 78 (974)
Q Consensus 9 k~lL~~~GIpvp~~~~~~s--------~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l--~~s~ee~~~a~~~~l~ 78 (974)
+++.++| +|-++.++. .-+..+.+..-. ..+|+||.-..||+ ||.+ --++++-+++.++.++
T Consensus 303 ~~~I~~H---vP~T~~l~~~~~~~~g~~~dL~~~~~a~r-~~lVLKP~D~Ygg~----GV~~G~e~~~eeW~~~l~~a~~ 374 (445)
T PF14403_consen 303 RAFIRRH---VPWTRLLTAGRTTYQGEDVDLVEFAIANR-DRLVLKPNDEYGGK----GVYIGWETSPEEWEAALEEAAR 374 (445)
T ss_pred HHHHHHh---CCceEEEcCccccccccchhHHHHHHhch-hcEEeccccccCCC----CeEECCcCCHHHHHHHHHHHhc
Confidence 5566664 677777765 223333333322 57999996667777 8888 4488888888777654
Q ss_pred ccccccccCCCCCceeEEEEEEEeccceeEEE
Q psy3769 79 MQLITSQTNQEGENVFCVLIEEYIDIKKELYI 110 (974)
Q Consensus 79 ~~~~t~q~~~~g~~~~~vLVee~v~~~~E~yl 110 (974)
. +.++||++...+|-+.
T Consensus 375 ~---------------~yilQe~v~~~~~~~~ 391 (445)
T PF14403_consen 375 E---------------PYILQEYVRPPREPMP 391 (445)
T ss_pred C---------------CcEEEEEecCCccccc
Confidence 3 4588998876665555
No 379
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=35.35 E-value=79 Score=37.58 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=46.5
Q ss_pred ccccchhhhhc---cCCCCceEEEEe--cCCCCCccccccccccchhhhcc---cCCCcEEEEEecch---hHHHHHHHH
Q psy3769 330 TGRFHTNLCLN---YGNGKKAFVAGV--NPKKNGQKFEEIPIFDTVKNAKN---ETGATVSVIYVPAI---FATSAIWEA 398 (974)
Q Consensus 330 ~G~~v~~~l~~---~g~~g~~~V~pV--nP~~~g~~i~G~~~y~sl~dip~---~~~vDlavi~vp~~---~v~~~v~e~ 398 (974)
.|..+.+.+.+ .||+ .+.-+ +|...+.. .|+|++.+++|+++ ++.+|.++++.|.. ...+++++|
T Consensus 139 ~~~~l~~~L~~~~~~g~~---vvG~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~~~~~ll~~~ 214 (451)
T TIGR03023 139 LGRRLAERLARNPELGYR---VVGFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAEDRILELLDAL 214 (451)
T ss_pred HHHHHHHHHHhCccCCcE---EEEEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHHHHHHHHHHH
Confidence 34445555543 3455 34333 33332334 88999988887653 35899999999873 356788888
Q ss_pred HHcCCcE
Q psy3769 399 IESELEL 405 (974)
Q Consensus 399 ~~~gv~~ 405 (974)
-+.|++-
T Consensus 215 ~~~gv~V 221 (451)
T TIGR03023 215 EDLTVDV 221 (451)
T ss_pred HhcCCEE
Confidence 8888874
No 380
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=34.75 E-value=90 Score=31.91 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=51.0
Q ss_pred ccccCcccccchhhhhccCCCCceEEEEe--cCCCCCccccccccccchhhhccc-CCCcEEEEEecc-hhHHHHHHHHH
Q psy3769 324 FGITGKTGRFHTNLCLNYGNGKKAFVAGV--NPKKNGQKFEEIPIFDTVKNAKNE-TGATVSVIYVPA-IFATSAIWEAI 399 (974)
Q Consensus 324 ~G~~~k~G~~v~~~l~~~g~~g~~~V~pV--nP~~~g~~i~G~~~y~sl~dip~~-~~vDlavi~vp~-~~v~~~v~e~~ 399 (974)
+| .+..|..+++.|.+.||+ .+.-+ +|...++.+.|+|.+.+.+++.+. ...+.++++++. ..-.++++.+.
T Consensus 5 ~G-ag~~g~~~~~~l~~~g~~---vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l~ 80 (201)
T TIGR03570 5 IG-AGGHGRVVADIAEDSGWE---IVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKLK 80 (201)
T ss_pred Ec-CCHHHHHHHHHHHhCCCE---EEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHHH
Confidence 45 234566667777777776 44333 333335788999999888776531 145788888854 44456666676
Q ss_pred HcCCcEEEEE
Q psy3769 400 ESELELVICI 409 (974)
Q Consensus 400 ~~gv~~~vi~ 409 (974)
+.+++...++
T Consensus 81 ~~g~~~~~~i 90 (201)
T TIGR03570 81 AKGYRFATLI 90 (201)
T ss_pred hCCCcceEEe
Confidence 6776554343
No 381
>PRK10739 putative antibiotic transporter; Provisional
Probab=34.46 E-value=1.5e+02 Score=31.32 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=53.1
Q ss_pred hhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhcc
Q psy3769 691 SIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEK----FSSIIILCSILLGYLSGNMIFSD 761 (974)
Q Consensus 691 s~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~----~~~l~~~~~~~l~~ig~~l~~~~ 761 (974)
-+-|+|.-.++|++.+++.+--+..-+.+.+..++..++..=..+++- .|.++.++..+|..+|++|+...
T Consensus 17 Pig~ipiflslt~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 17 PLGNLPIFMSVLKHLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred HhhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356888889999877666666677777777766666555555555554 38899999999999999998654
No 382
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=34.45 E-value=63 Score=36.85 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=60.9
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCC--ccccccccccchhhhcccCCCcEEEEEecch-hHHHHHHHH--HHcC
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNG--QKFEEIPIFDTVKNAKNETGATVSVIYVPAI-FATSAIWEA--IESE 402 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g--~~i~G~~~y~sl~dip~~~~vDlavi~vp~~-~v~~~v~e~--~~~g 402 (974)
|..|..+.+.+..+|++ |..++|.... ....|.....|++++-. .-|++++.+|-- .+...+.+. .+..
T Consensus 151 G~IG~~va~~l~afgm~----v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~--~sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 151 GRIGRAVAKRLKAFGMK----VIGYDPYSPRERAGVDGVVGVDSLDELLA--EADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred CHHHHHHHHHHHhCCCe----EEEECCCCchhhhccccceecccHHHHHh--hCCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 56888999999999987 7888883211 23345666688999987 899999999963 344444332 2333
Q ss_pred CcEEEEEcCCCC-hHHHHHHHHHHhcCCCCce
Q psy3769 403 LELVICITEGIP-VRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 403 v~~~vi~s~G~~-e~~~~~l~~~a~~~~~gi~ 433 (974)
- .++++..+-. --++..|.+..+ +..++
T Consensus 225 ~-gailIN~aRG~vVde~aL~~AL~--~G~i~ 253 (324)
T COG0111 225 P-GAILINAARGGVVDEDALLAALD--SGKIA 253 (324)
T ss_pred C-CeEEEECCCcceecHHHHHHHHH--cCCcc
Confidence 2 3355554322 234556777776 54444
No 383
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=34.24 E-value=61 Score=40.05 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=31.7
Q ss_pred CHHHHHHHhhhCCCccEEEEEEccC-CCchHHHHHHHHh-----cCCCCEEEEec
Q psy3769 502 KYIDILKLFNEDQNTDAVIMIGEIG-GLDEIYAANWIKK-----NMKKPVIGFIA 550 (974)
Q Consensus 502 ~~~d~l~~l~~Dp~t~~I~ly~E~~-g~~~~~~~~f~~~-----~~~KPVv~lk~ 550 (974)
++.+.|+...+||++++|++.+.+. |.......+..++ +.+|||+++--
T Consensus 80 ~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~ 134 (584)
T TIGR00705 80 DIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGT 134 (584)
T ss_pred HHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4556667788899999999999854 2211112222222 46899999843
No 384
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=34.12 E-value=84 Score=37.80 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=50.7
Q ss_pred cccccCcccccchhhhhcc---CCCCceEEEEecCCCCCccccccccccchhhhc---ccCCCcEEEEEecch---hHHH
Q psy3769 323 IFGITGKTGRFHTNLCLNY---GNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAK---NETGATVSVIYVPAI---FATS 393 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~---g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip---~~~~vDlavi~vp~~---~v~~ 393 (974)
|+|. +..|..+.+.+.+. ||+ .+.-+.++....++.|+|++.+.+++. .++.+|. ++++|.. ...+
T Consensus 151 IIGa-G~~a~~l~~~L~~~~~~g~~---vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r~~ 225 (476)
T PRK15204 151 ILGS-GQNARGAYSALQSEEMMGFD---VIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKTHF 225 (476)
T ss_pred EEEC-CHHHHHHHHHHHhCccCCcE---EEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHHHH
Confidence 3552 23444555555543 565 455554433235688999998876552 1235674 7888843 4557
Q ss_pred HHHHHHHcCCcEEEEEc
Q psy3769 394 AIWEAIESELELVICIT 410 (974)
Q Consensus 394 ~v~e~~~~gv~~~vi~s 410 (974)
.+++|.+.|++.+.++.
T Consensus 226 il~~l~~~gv~~V~vIP 242 (476)
T PRK15204 226 WLRELSKHHCRSVTVVP 242 (476)
T ss_pred HHHHHhhcCCeEEEEeC
Confidence 88999888987655544
No 385
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=34.05 E-value=1.1e+02 Score=34.81 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=19.0
Q ss_pred eEEEEEEEeccceeEEEEEEEeccC
Q psy3769 94 FCVLIEEYIDIKKELYISFMTDRVQ 118 (974)
Q Consensus 94 ~~vLVee~v~~~~E~ylgi~~Dr~~ 118 (974)
.+++.|||+. |+-+.+++.-+.+.
T Consensus 176 ~~~i~Qefi~-G~p~Svs~is~g~~ 199 (389)
T COG2232 176 PGFIFQEFIE-GRPVSVSFISNGSD 199 (389)
T ss_pred cceehhhhcC-CceeEEEEEecCcc
Confidence 5789999998 77888888877544
No 386
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=33.56 E-value=1.6e+02 Score=31.23 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=50.3
Q ss_pred hchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhhcc
Q psy3769 692 IDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIE----KFSSIIILCSILLGYLSGNMIFSD 761 (974)
Q Consensus 692 ~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~----~~~~l~~~~~~~l~~ig~~l~~~~ 761 (974)
+.|+|.-.++|++.++..+--+..-+.+++..++..+...=..+++ ..|.++.++..+|..+|.+|+...
T Consensus 21 ig~ipvfl~lt~~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 21 IGNIPIFISLTEYYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5678888899987666555666666666666665544444344444 358999999999999999998653
No 387
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=33.10 E-value=82 Score=35.75 Aligned_cols=76 Identities=25% Similarity=0.283 Sum_probs=52.9
Q ss_pred CEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh--
Q psy3769 462 RIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK-- 539 (974)
Q Consensus 462 ~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~-- 539 (974)
.|++|.-+|++.. .+.+.+ .++++ +..+.++....||++++|+|.+++-|...-......++
T Consensus 60 ~Iavi~~~G~I~~--------~~~~~~---~~~~~-----~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~ 123 (317)
T COG0616 60 VIAVIHVEGAIVA--------GGGPLR---FIGGD-----DIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALK 123 (317)
T ss_pred EEEEEEeeeeeec--------CCCccc---cccHH-----HHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHH
Confidence 5999999998852 233333 44443 57889999999999999999999877653222222222
Q ss_pred --cCCCCEEEEecccC
Q psy3769 540 --NMKKPVIGFIAGIT 553 (974)
Q Consensus 540 --~~~KPVv~lk~Grs 553 (974)
...|||++.-++-.
T Consensus 124 ~l~~~~PV~v~v~~~A 139 (317)
T COG0616 124 RLRAKKPVVVSVGGYA 139 (317)
T ss_pred HHhhcCCEEEEECCee
Confidence 44459999988765
No 388
>PRK13243 glyoxylate reductase; Reviewed
Probab=32.88 E-value=1.9e+02 Score=32.99 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=54.7
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCc--cccccccccchhhhcccCCCcEEEEEecchh-HHHHH-HHHHHc-C
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQ--KFEEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAI-WEAIES-E 402 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~--~i~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v-~e~~~~-g 402 (974)
|..|..+.+.+..+|++ |+.++|..... +..|.+ +.+++++-. ..|++++++|... +...+ ++..++ .
T Consensus 159 G~IG~~vA~~l~~~G~~----V~~~d~~~~~~~~~~~~~~-~~~l~ell~--~aDiV~l~lP~t~~T~~~i~~~~~~~mk 231 (333)
T PRK13243 159 GRIGQAVARRAKGFGMR----ILYYSRTRKPEAEKELGAE-YRPLEELLR--ESDFVSLHVPLTKETYHMINEERLKLMK 231 (333)
T ss_pred CHHHHHHHHHHHHCCCE----EEEECCCCChhhHHHcCCE-ecCHHHHHh--hCCEEEEeCCCChHHhhccCHHHHhcCC
Confidence 56888888999888875 67777754111 122443 568888866 7899999999643 44444 233332 3
Q ss_pred CcEEEEEcCCC-ChHHHHHHHHHHh
Q psy3769 403 LELVICITEGI-PVRDMLILKNKMK 426 (974)
Q Consensus 403 v~~~vi~s~G~-~e~~~~~l~~~a~ 426 (974)
-.+ +++.-+- +--+++.|.+..+
T Consensus 232 ~ga-~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 232 PTA-ILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CCe-EEEECcCchhcCHHHHHHHHH
Confidence 334 4444332 2234556677776
No 389
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.58 E-value=1e+02 Score=32.78 Aligned_cols=107 Identities=10% Similarity=0.191 Sum_probs=65.5
Q ss_pred cCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHH
Q psy3769 313 QNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFAT 392 (974)
Q Consensus 313 ~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~ 392 (974)
+.++-.|+ -+.+......+.+.|.+.|++- .-...|-. .++..++++-++. +|+. +-.--=..+
T Consensus 7 ~~~liaVl---r~~~~e~a~~~~~al~~~Gi~~--iEit~~t~---------~a~~~i~~l~~~~-~~~~-vGAGTVl~~ 70 (204)
T TIGR01182 7 EAKIVPVI---RIDDVDDALPLAKALIEGGLRV--LEVTLRTP---------VALDAIRLLRKEV-PDAL-IGAGTVLNP 70 (204)
T ss_pred hCCEEEEE---ecCCHHHHHHHHHHHHHcCCCE--EEEeCCCc---------cHHHHHHHHHHHC-CCCE-EEEEeCCCH
Confidence 34455552 3433345566778888999883 11333221 2445566665422 3533 333333446
Q ss_pred HHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccCc
Q psy3769 393 SAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPEE 447 (974)
Q Consensus 393 ~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~ 447 (974)
+.+++|.++|.+. ++|.++. .++.+.|+ ++|+.++ | |..+|..
T Consensus 71 ~~a~~a~~aGA~F--ivsP~~~----~~v~~~~~--~~~i~~i-P---G~~TptE 113 (204)
T TIGR01182 71 EQLRQAVDAGAQF--IVSPGLT----PELAKHAQ--DHGIPII-P---GVATPSE 113 (204)
T ss_pred HHHHHHHHcCCCE--EECCCCC----HHHHHHHH--HcCCcEE-C---CCCCHHH
Confidence 7799999999996 6888885 35678899 9999877 4 6666653
No 390
>PF05661 DUF808: Protein of unknown function (DUF808); InterPro: IPR008526 This family consists of several bacterial proteins of unknown function.
Probab=32.55 E-value=7.3e+02 Score=27.79 Aligned_cols=24 Identities=4% Similarity=0.234 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHhhhcccch
Q psy3769 741 SIIILCSILLGYLSGNMIFSDQSL 764 (974)
Q Consensus 741 ~l~~~~~~~l~~ig~~l~~~~~~~ 764 (974)
.|..++-..+.|+|+-.+.++...
T Consensus 230 ~LsvVGT~AM~~VGGgIl~hgl~~ 253 (295)
T PF05661_consen 230 ALSVVGTAAMFWVGGGILVHGLPE 253 (295)
T ss_pred HHHHHHHHHHHHhCceeeeeCcHH
Confidence 455667778889999988887643
No 391
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.53 E-value=1.5e+02 Score=29.26 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=55.9
Q ss_pred ccCcccccchhhhh-ccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEec----chhHHHHHHHHHH
Q psy3769 326 ITGKTGRFHTNLCL-NYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVP----AIFATSAIWEAIE 400 (974)
Q Consensus 326 ~~~k~G~~v~~~l~-~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp----~~~v~~~v~e~~~ 400 (974)
...-.|..++..++ +.||+ .+|. -+.. ....+.+...+..+|++.++.- ...+.+.++++.+
T Consensus 14 D~H~lG~~iv~~~lr~~G~e---Vi~L-G~~v---------p~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 14 DCHAVGNKILDRALTEAGFE---VINL-GVMT---------SQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred ChhHHHHHHHHHHHHHCCCE---EEEC-CCCC---------CHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHh
Confidence 33346666666555 67887 3432 1111 1123334333458898888752 3346677777777
Q ss_pred cCCcEEEEEcCCCC---hHHHHHHHHHHhcCCCCc-eEEccCC
Q psy3769 401 SELELVICITEGIP---VRDMLILKNKMKKNNSKT-LLLGPNC 439 (974)
Q Consensus 401 ~gv~~~vi~s~G~~---e~~~~~l~~~a~~~~~gi-~viGPnc 439 (974)
.+.+.+.|+-+|-. +.+..+..+.++ +.|+ ++.+|+.
T Consensus 81 ~~~~~~~i~vGG~~~~~~~~~~~~~~~l~--~~G~~~vf~~~~ 121 (137)
T PRK02261 81 AGLGDILLYVGGNLVVGKHDFEEVEKKFK--EMGFDRVFPPGT 121 (137)
T ss_pred cCCCCCeEEEECCCCCCccChHHHHHHHH--HcCCCEEECcCC
Confidence 76655545555532 233455567777 7786 4667765
No 392
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=32.04 E-value=1.1e+02 Score=28.55 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.3
Q ss_pred CeEEEecCCcEeEEEEEeecC
Q psy3769 946 DCIVENIHGKLLGTVTEIIQN 966 (974)
Q Consensus 946 G~~V~d~~g~~lG~V~~v~~~ 966 (974)
|..|+|++++.+|+|.||+=.
T Consensus 28 ~~~V~~~~~k~IG~V~dVfGP 48 (98)
T COG3277 28 NAPVYDANLKRIGKVVDVFGP 48 (98)
T ss_pred CCeeEecCCCEEEEEEEEEcc
Confidence 899999999999999999853
No 393
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=31.51 E-value=93 Score=34.43 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=33.9
Q ss_pred ccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc-CCc-EEEEEcCCCChH
Q psy3769 367 FDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES-ELE-LVICITEGIPVR 416 (974)
Q Consensus 367 y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~-gv~-~~vi~s~G~~e~ 416 (974)
..+.+++ + +.|++++++|+..+.+++++.... +-+ .++.++.|+...
T Consensus 58 ~~~~~~~-~--~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~ 106 (304)
T PRK06522 58 ADDPAEL-G--PQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL 106 (304)
T ss_pred CCChhHc-C--CCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 3445554 3 789999999999999999888763 332 466777887633
No 394
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=30.53 E-value=1e+02 Score=36.49 Aligned_cols=47 Identities=6% Similarity=0.166 Sum_probs=35.7
Q ss_pred ccccccccccchhhhc---ccCCCcEEEEEecchh---HHHHHHHHHHcCCcE
Q psy3769 359 QKFEEIPIFDTVKNAK---NETGATVSVIYVPAIF---ATSAIWEAIESELEL 405 (974)
Q Consensus 359 ~~i~G~~~y~sl~dip---~~~~vDlavi~vp~~~---v~~~v~e~~~~gv~~ 405 (974)
..+.|+|++.+++|++ .++.+|.++++.|... ..+.+++|-+.|++-
T Consensus 166 ~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~~~~~ll~~~~~~gv~V 218 (445)
T TIGR03025 166 VEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEARILELLLQLRDLGVDV 218 (445)
T ss_pred cccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHHHHHHHHHHHHhcCCEE
Confidence 4678999998887765 2357999999987643 456888888888874
No 395
>COG2119 Predicted membrane protein [Function unknown]
Probab=30.20 E-value=1.9e+02 Score=30.18 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=46.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhh-h--hHHHHHHHHHHHHHHHhhhcccchh
Q psy3769 710 QMLLVIIGILFSIPIIIFGSKLVLILIEKF-S--SIIILCSILLGYLSGNMIFSDQSLT 765 (974)
Q Consensus 710 ~~~li~~g~~~~i~~l~~~~~~~~~~~~~~-~--~l~~~~~~~l~~ig~~l~~~~~~~~ 765 (974)
.++.|++|..++...|-.++.++....--+ | ++.+.....-.-.|++|+.+|....
T Consensus 32 ~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~ 90 (190)
T COG2119 32 RRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDD 90 (190)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccccccc
Confidence 589999999999999999999998876666 5 6777777777778999999987654
No 396
>PLN02591 tryptophan synthase
Probab=30.15 E-value=4.9e+02 Score=28.52 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 390 FATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 390 ~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
-....+++|.+.|+.++++. ..+-++..++.+.|+ ++|+..+
T Consensus 94 G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~--~~gl~~I 135 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAA--KNGIELV 135 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHH--HcCCeEE
Confidence 46778999999999996664 455566678899999 9998765
No 397
>KOG3432|consensus
Probab=29.74 E-value=71 Score=30.17 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=34.7
Q ss_pred CCceeeecCCCCCHHHHHHHHHHHhhcCCeEEEEEcccc
Q psy3769 287 EPANFLDIGGGATIKTITEAFKIMMQQNNLKTILVNIFG 325 (974)
Q Consensus 287 ~panfld~GG~a~~~~v~~a~~~il~~~~~~~i~vni~G 325 (974)
.--||+-+--..|.+++.++|+..++.+.+..||||=+-
T Consensus 34 r~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLInq~~ 72 (121)
T KOG3432|consen 34 REPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILINQFI 72 (121)
T ss_pred CCCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEhHHH
Confidence 456999999999999999999999999999999988653
No 398
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=29.69 E-value=86 Score=35.91 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=35.5
Q ss_pred chhhhcc-cCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCC
Q psy3769 369 TVKNAKN-ETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIP 414 (974)
Q Consensus 369 sl~dip~-~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~ 414 (974)
+.+++|= +..+|+++-++......+....++++|++. |++|+-+.
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~-V~iSap~~ 126 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKK-VLFSHPGS 126 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEE-EEecCCcc
Confidence 5666652 148999999999999999999999999986 66676543
No 399
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=29.48 E-value=1.5e+02 Score=30.70 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=37.3
Q ss_pred HHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh--cCCCCEEEEecccC
Q psy3769 504 IDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK--NMKKPVIGFIAGIT 553 (974)
Q Consensus 504 ~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~--~~~KPVv~lk~Grs 553 (974)
.+.++...+++ .+.|++++.+-|..-...++..+. ...|||+++-.|..
T Consensus 19 ~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~A 69 (178)
T cd07021 19 ERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRA 69 (178)
T ss_pred HHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCch
Confidence 34455556666 899999999988765666777666 56799999998875
No 400
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.42 E-value=4.4e+02 Score=32.35 Aligned_cols=192 Identities=16% Similarity=0.124 Sum_probs=108.5
Q ss_pred cccccchhhhhccC-CCCceEEEEecC--CCCCccccccccccchhhhc---ccCCCcEEEEEecc---hhHHHHHHHHH
Q psy3769 329 KTGRFHTNLCLNYG-NGKKAFVAGVNP--KKNGQKFEEIPIFDTVKNAK---NETGATVSVIYVPA---IFATSAIWEAI 399 (974)
Q Consensus 329 k~G~~v~~~l~~~g-~~g~~~V~pVnP--~~~g~~i~G~~~y~sl~dip---~~~~vDlavi~vp~---~~v~~~v~e~~ 399 (974)
..|...++.+++.+ |. .|..+.+ ..-|.++.|+|+|.+.+ ++ ++..+|.++++.|+ +...++++.|.
T Consensus 126 ~ag~~l~r~~~~~~~~~---pV~fiDdd~~~~g~~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~~~~~~~~i~~~l~ 201 (588)
T COG1086 126 SAGDLLLRALRRDPEYT---PVAFLDDDPDLTGMKIRGVPVLGRIE-IERVVEELGIQLILIAIPSASQEERRRILLRLA 201 (588)
T ss_pred hHHHHHHHHHHhCCCcc---eEEEECCChhhcCCEEeceeeechhH-HHHHHHHcCCceEEEecCCCCHHHHHHHHHHHH
Confidence 34555555555332 44 4555543 33357899999999887 54 44688999999887 45677899999
Q ss_pred HcCCcEEEEEcCCCChHHHHHHHHH---HhcCCCCc-eEEccCCccccccCccccccCCCCCCCCCCEEEEe-CChhhHH
Q psy3769 400 ESELELVICITEGIPVRDMLILKNK---MKKNNSKT-LLLGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVS-RSGTLTY 474 (974)
Q Consensus 400 ~~gv~~~vi~s~G~~e~~~~~l~~~---a~~~~~gi-~viGPnc~G~~~~~~~~~~~~~~~~~~~G~va~vS-QSG~~~~ 474 (974)
+.|++.-++ . .+ .++.+. .| +-.+ .++|=.-. .+...... ..-.|+.-+|+ --|++++
T Consensus 202 ~~~~~v~~l-P-~~-----~~l~~~~~~lr--eI~ieDLLgR~pV---~~d~~~i~-----~~~~gK~vLVTGagGSiGs 264 (588)
T COG1086 202 RTGIAVRIL-P-QL-----TDLKDLNGQLR--EIEIEDLLGRPPV---ALDTELIG-----AMLTGKTVLVTGGGGSIGS 264 (588)
T ss_pred hcCCcEEec-C-cH-----HHHHHhccccc--cCCHHHHhCCCCC---CCCHHHHH-----hHcCCCEEEEeCCCCcHHH
Confidence 999775333 1 11 111110 11 0001 01111100 00000000 11235555554 5678899
Q ss_pred HHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh-cCCCCEEEEec
Q psy3769 475 EVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK-NMKKPVIGFIA 550 (974)
Q Consensus 475 ~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~-~~~KPVv~lk~ 550 (974)
+++.+..+. +..+.+=.+.. ....-++-..+.+.-....+..|+-++ +|.++..++ ...||=+++.+
T Consensus 265 el~~qil~~--~p~~i~l~~~~---E~~~~~i~~el~~~~~~~~~~~~igdV----rD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 265 ELCRQILKF--NPKEIILFSRD---EYKLYLIDMELREKFPELKLRFYIGDV----RDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred HHHHHHHhc--CCCEEEEecCc---hHHHHHHHHHHHhhCCCcceEEEeccc----ccHHHHHHHHhcCCCceEEEh
Confidence 999887766 56666666665 344556656666642345566777777 666677666 66688888754
No 401
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.37 E-value=1.9e+02 Score=30.89 Aligned_cols=165 Identities=12% Similarity=0.118 Sum_probs=88.5
Q ss_pred hcCCeEEEEEccccccCcccccchhhhhccCCCCceEE-EEecCCCCCccccccccccchhhhcccCC--CcEEEEEecc
Q psy3769 312 QQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFV-AGVNPKKNGQKFEEIPIFDTVKNAKNETG--ATVSVIYVPA 388 (974)
Q Consensus 312 ~~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V-~pVnP~~~g~~i~G~~~y~sl~dip~~~~--vDlavi~vp~ 388 (974)
.+.++-.|+ -+.+......+.+.|.+.|++- + ...| .. .++..++++-++.+ +|+. +-.--
T Consensus 11 ~~~~vi~vi---r~~~~~~a~~~~~al~~~Gi~~---iEit~~-~~--------~a~~~i~~l~~~~~~~p~~~-vGaGT 74 (213)
T PRK06552 11 KANGVVAVV---RGESKEEALKISLAVIKGGIKA---IEVTYT-NP--------FASEVIKELVELYKDDPEVL-IGAGT 74 (213)
T ss_pred HHCCEEEEE---ECCCHHHHHHHHHHHHHCCCCE---EEEECC-Cc--------cHHHHHHHHHHHcCCCCCeE-Eeeee
Confidence 345555553 3444445666778888999882 3 2222 11 24455555543222 4644 43333
Q ss_pred hhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccCccccccCCCCCCCCCCEEEEeC
Q psy3769 389 IFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPEEIKIGIMPGNIHKKGRIGVVSR 468 (974)
Q Consensus 389 ~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~~~~~~~~~~~~~~G~va~vSQ 468 (974)
=..++-+++|.++|.+. ++|.++. .++.+.|+ ++|+.++ |.| .+|..-..+... ..--|.+..
T Consensus 75 V~~~~~~~~a~~aGA~F--ivsP~~~----~~v~~~~~--~~~i~~i-PG~---~T~~E~~~A~~~----Gad~vklFP- 137 (213)
T PRK06552 75 VLDAVTARLAILAGAQF--IVSPSFN----RETAKICN--LYQIPYL-PGC---MTVTEIVTALEA----GSEIVKLFP- 137 (213)
T ss_pred CCCHHHHHHHHHcCCCE--EECCCCC----HHHHHHHH--HcCCCEE-CCc---CCHHHHHHHHHc----CCCEEEECC-
Confidence 34467789999999986 6688876 35678899 9999988 544 444332211100 001122211
Q ss_pred ChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCC
Q psy3769 469 SGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQN 515 (974)
Q Consensus 469 SG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~ 515 (974)
++.++...+..++. -+.--.++.+|+ ++...+-+|+..-..
T Consensus 138 a~~~G~~~ik~l~~-~~p~ip~~atGG-----I~~~N~~~~l~aGa~ 178 (213)
T PRK06552 138 GSTLGPSFIKAIKG-PLPQVNVMVTGG-----VNLDNVKDWFAAGAD 178 (213)
T ss_pred cccCCHHHHHHHhh-hCCCCEEEEECC-----CCHHHHHHHHHCCCc
Confidence 22333444444433 233234566665 455666666665543
No 402
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=29.26 E-value=2.5e+02 Score=32.75 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=56.9
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchh-----HHHHHH-
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIF-----ATSAIW- 396 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~-----v~~~v~- 396 (974)
|+| .|..|..+.+.+...|++ |...+|.. .+......|.+++++-. ..|++++.+|-.. +...+.
T Consensus 121 IIG-~G~IG~~vA~~l~a~G~~----V~~~dp~~--~~~~~~~~~~~L~ell~--~sDiI~lh~PLt~~g~~~T~~li~~ 191 (378)
T PRK15438 121 IVG-VGNVGRRLQARLEALGIK----TLLCDPPR--ADRGDEGDFRSLDELVQ--EADILTFHTPLFKDGPYKTLHLADE 191 (378)
T ss_pred EEC-cCHHHHHHHHHHHHCCCE----EEEECCcc--cccccccccCCHHHHHh--hCCEEEEeCCCCCCcccccccccCH
Confidence 345 256888899999988876 77778864 22111124779999976 7899999998533 322332
Q ss_pred HHHH-cCCcEEEEEcCCCCh-HHHHHHHHHHh
Q psy3769 397 EAIE-SELELVICITEGIPV-RDMLILKNKMK 426 (974)
Q Consensus 397 e~~~-~gv~~~vi~s~G~~e-~~~~~l~~~a~ 426 (974)
+..+ ..- .++++..+-.+ -+++.|.+..+
T Consensus 192 ~~l~~mk~-gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 192 KLIRSLKP-GAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred HHHhcCCC-CcEEEECCCchhcCHHHHHHHHH
Confidence 2222 232 34566654332 24555666665
No 403
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=28.98 E-value=1.6e+02 Score=30.14 Aligned_cols=50 Identities=34% Similarity=0.317 Sum_probs=34.5
Q ss_pred chhhHHHHHHHHHHHHHHHHH-HHHHHHhhh----hHHHHHHHHHHHHHHHhhhc
Q psy3769 711 MLLVIIGILFSIPIIIFGSKL-VLILIEKFS----SIIILCSILLGYLSGNMIFS 760 (974)
Q Consensus 711 ~~li~~g~~~~i~~l~~~~~~-~~~~~~~~~----~l~~~~~~~l~~ig~~l~~~ 760 (974)
-+...+|..++......++-+ +..+++.+| .++++++++|.|+|.++.-+
T Consensus 21 ~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 21 GVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355666666666666444443 455666555 57889999999999998864
No 404
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=28.97 E-value=96 Score=34.51 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=49.6
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCcccc----------------------------c-cccccchhhh
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFE----------------------------E-IPIFDTVKNA 373 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~----------------------------G-~~~y~sl~di 373 (974)
++| .+..|..+...+...|++ |+.++++. +... + +.+..+.+++
T Consensus 9 vIG-~G~mG~~iA~~l~~~G~~----V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T PLN02545 9 VVG-AGQMGSGIAQLAAAAGMD----VWLLDSDP--AALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL 81 (295)
T ss_pred EEC-CCHHHHHHHHHHHhcCCe----EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence 356 356788888888888876 66666653 2211 1 2233344443
Q ss_pred cccCCCcEEEEEec--chhHHHHHHHHHHc-CCcEEEE-EcCCCChHH
Q psy3769 374 KNETGATVSVIYVP--AIFATSAIWEAIES-ELELVIC-ITEGIPVRD 417 (974)
Q Consensus 374 p~~~~vDlavi~vp--~~~v~~~v~e~~~~-gv~~~vi-~s~G~~e~~ 417 (974)
+ ..|+++.++| ++.-..++.+..+. .-..+++ .+++++.++
T Consensus 82 -~--~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~ 126 (295)
T PLN02545 82 -R--DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR 126 (295)
T ss_pred -C--CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 3 6899999999 65555566665542 2233343 467776443
No 405
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=28.93 E-value=98 Score=36.83 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=49.3
Q ss_pred cccccCcccccchhhhh---ccCCCCceEEEEec--CCCCCccccccccccchhhhc---ccCCCcEEEEEecc---hhH
Q psy3769 323 IFGITGKTGRFHTNLCL---NYGNGKKAFVAGVN--PKKNGQKFEEIPIFDTVKNAK---NETGATVSVIYVPA---IFA 391 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~---~~g~~g~~~V~pVn--P~~~g~~i~G~~~y~sl~dip---~~~~vDlavi~vp~---~~v 391 (974)
|+|. +..|..+.+.+. +.||+ .+.-+. |...+..+.|+|++.+ +|++ .++.+|.++++.|. +..
T Consensus 130 IiGa-g~~~~~l~~~l~~~~~~g~~---vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip~~~~~~~ 204 (456)
T TIGR03022 130 IIGA-GQNAAILYRALQSNPQLGLR---PLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMPGTQAEDM 204 (456)
T ss_pred EEeC-CHHHHHHHHHHhhCccCCcE---EEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecCCccHHHH
Confidence 3552 234444555554 23555 343343 3232457889999877 6553 23578999999883 446
Q ss_pred HHHHHHHHHcCCcEEEEE
Q psy3769 392 TSAIWEAIESELELVICI 409 (974)
Q Consensus 392 ~~~v~e~~~~gv~~~vi~ 409 (974)
.+.+++|.+.|++.+.++
T Consensus 205 ~~ll~~l~~~~v~~V~~v 222 (456)
T TIGR03022 205 ARLVRKLGALHFRNVLIV 222 (456)
T ss_pred HHHHHHHHhCCCeEEEEe
Confidence 678888888888554444
No 406
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=28.90 E-value=1.2e+02 Score=33.20 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=53.2
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecc-----------h--
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPA-----------I-- 389 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~-----------~-- 389 (974)
|.|.++-.|..+.+.|++.|+. ++ .+..+. -..+..+.+++++.....+|.++-+... .
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~~---v~-~~~~~~----~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~ 73 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGFT---NL-VLRTHK----ELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADF 73 (306)
T ss_pred cccCCCcccHHHHHHHHhCCCc---EE-Eeeccc----cCCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHH
Confidence 4677888999999999988877 34 333322 1234556677776554467887766411 0
Q ss_pred ------hHHHHHHHHHHcCCcEEEEEcC
Q psy3769 390 ------FATSAIWEAIESELELVICITE 411 (974)
Q Consensus 390 ------~v~~~v~e~~~~gv~~~vi~s~ 411 (974)
....+++.|.+.+++.+|.+|+
T Consensus 74 ~~~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 74 IRENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHHHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 1445778888888888777765
No 407
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=28.81 E-value=2.7e+02 Score=31.50 Aligned_cols=106 Identities=18% Similarity=0.125 Sum_probs=68.5
Q ss_pred cEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCC--ceEEccCCccccccCccccccCCCCC
Q psy3769 380 TVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSK--TLLLGPNCPGLIVPEEIKIGIMPGNI 457 (974)
Q Consensus 380 Dlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~g--i~viGPnc~G~~~~~~~~~~~~~~~~ 457 (974)
|.++....+..+...++++.+.|-+.-|++.++.|..+-..+.+... +.| +.++=.|++|.+-+...+...-....
T Consensus 122 ~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~--~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v 199 (310)
T PRK08535 122 DVIMTHCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELA--EYGIPVTLIVDSAVRYFMKDVDKVVVGADAI 199 (310)
T ss_pred CEEEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHH--HCCCCEEEEehhHHHHHHHhCCEEEECccEE
Confidence 55566667788999999999988777788888887644344555555 555 46777888876654432211111112
Q ss_pred CCCCCEEEEeCChhhHHHHHHHHHHcCCceEEEe
Q psy3769 458 HKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAV 491 (974)
Q Consensus 458 ~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~v 491 (974)
..-|+ +++.+|+...+++ |++.++.|--+.
T Consensus 200 ~~nG~--v~nkiGT~~~A~~--Ak~~~vPv~V~a 229 (310)
T PRK08535 200 TANGA--VINKIGTSQIALA--AHEARVPFMVAA 229 (310)
T ss_pred ecCCC--EEeHHhHHHHHHH--HHHhCCCEEEec
Confidence 23343 5699999988875 466787775443
No 408
>KOG0409|consensus
Probab=28.77 E-value=79 Score=35.48 Aligned_cols=174 Identities=16% Similarity=0.177 Sum_probs=106.6
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCcc--ccccccccchhhhcccCCCcEEEEEecch-hHHHHHHHHHHcCC-
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQK--FEEIPIFDTVKNAKNETGATVSVIYVPAI-FATSAIWEAIESEL- 403 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~--i~G~~~y~sl~dip~~~~vDlavi~vp~~-~v~~~v~e~~~~gv- 403 (974)
+-.|..+..||++.||+- .||-+++.. -++ -.|-.++.|-.|+.+ ..|+++.++|.. .+.+++-. +.|+
T Consensus 44 G~MG~~M~~nLik~G~kV--tV~dr~~~k-~~~f~~~Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~v~~g--~~Gvl 116 (327)
T KOG0409|consen 44 GNMGSAMVSNLIKAGYKV--TVYDRTKDK-CKEFQEAGARVANSPAEVAE--DSDVVITMVPNPKDVKDVLLG--KSGVL 116 (327)
T ss_pred ccchHHHHHHHHHcCCEE--EEEeCcHHH-HHHHHHhchhhhCCHHHHHh--hcCEEEEEcCChHhhHHHhcC--CCcce
Confidence 457888999999999995 678877754 122 248899999999987 899999999864 44555443 2221
Q ss_pred ------cEEEEEcCCCChHHHHHHHHHHhcCCCCceEE-ccCCccccccCccccccCCCC------C-----CCCC-CEE
Q psy3769 404 ------ELVICITEGIPVRDMLILKNKMKKNNSKTLLL-GPNCPGLIVPEEIKIGIMPGN------I-----HKKG-RIG 464 (974)
Q Consensus 404 ------~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi-GPnc~G~~~~~~~~~~~~~~~------~-----~~~G-~va 464 (974)
+...+-++-+...-..+|.+.++ ..|-+.+ .|=+-|.--...+...++... . -.=| ++=
T Consensus 117 ~g~~~g~~~~vDmSTidp~~s~ei~~~i~--~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~ 194 (327)
T KOG0409|consen 117 SGIRPGKKATVDMSTIDPDTSLEIAKAIS--NKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVV 194 (327)
T ss_pred eeccCCCceEEeccccCHHHHHHHHHHHH--hCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEE
Confidence 22223333333333467777777 6677755 777777666555433333220 0 0114 677
Q ss_pred EEeCChhhHHHHH-HH-H-HHcCCceEEEeecCCCCCCCCCHHHHHHHhhh
Q psy3769 465 VVSRSGTLTYEVV-CQ-L-TELGFGQSSAVGIGGDPINGLKYIDILKLFNE 512 (974)
Q Consensus 465 ~vSQSG~~~~~~~-~~-~-~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~ 512 (974)
+..++|+-..+-+ .. + ...=+|++....+|-+. ++|...+++-+..
T Consensus 195 ~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~--GLd~~~l~eiln~ 243 (327)
T KOG0409|consen 195 FLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRL--GLDAKKLLEILNT 243 (327)
T ss_pred EecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhc
Confidence 7788877554322 11 1 11225666666677773 7788888877665
No 409
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=28.75 E-value=1.6e+02 Score=33.81 Aligned_cols=46 Identities=11% Similarity=0.014 Sum_probs=38.0
Q ss_pred cccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEc
Q psy3769 362 EEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICIT 410 (974)
Q Consensus 362 ~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s 410 (974)
.|++.+.+++++++ .+|+++.++|...-..-.+...+.|.|. ++++
T Consensus 61 ~~l~v~g~~eeLl~--~vDiVve~Tp~~~~~~na~~~~~~Gaka-Vl~~ 106 (333)
T TIGR01546 61 AGIEVAGTLEDLLE--KVDIVVDATPGGIGAKNKPLYEKAGVKA-IFQG 106 (333)
T ss_pred CceEecCCHHHHhh--cCCEEEECCCCCCChhhHHHHHhCCcCE-EEEC
Confidence 47888999999986 8999999999877777777888889997 4444
No 410
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=28.67 E-value=4.2e+02 Score=32.43 Aligned_cols=125 Identities=9% Similarity=0.063 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcccc----cc--ccCCCCCceeEEEEEEEeccc---eeE-EEEEEEeccCCce--eeeccCCCCccee
Q psy3769 67 EQVEKYTKKILGMQLI----TS--QTNQEGENVFCVLIEEYIDIK---KEL-YISFMTDRVQQNI--IFMGSNKGGMDIE 134 (974)
Q Consensus 67 ee~~~a~~~~l~~~~~----t~--q~~~~g~~~~~vLVee~v~~~---~E~-ylgi~~Dr~~~~p--vii~s~~GGv~iE 134 (974)
+++.++.++.+.+... .. ..+-.......|+||+|+... ... =|.+++|+..+.+ +..+. ..|..-.
T Consensus 160 ~qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~-~~GlGe~ 238 (530)
T PRK05878 160 EQLRAAIEAVFASWNSPRAVAYRRHHGLDDDGGTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWL-PGGQGED 238 (530)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCCcccCcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEc-CCCCCHH
Confidence 7888888887765321 11 112122234789999999642 122 2677888766633 22222 2222222
Q ss_pred eccccCCcceEEEEeCCCCCCCHHHHHHHHHHCCCChhhHHHHHHHHHHHHhhcccCCeeEEeeceeEEccCCcEEEEEE
Q psy3769 135 IISKNSPELLYKTIIDPLIGLTKNNIDNISKKISIPKNSLINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDI 214 (974)
Q Consensus 135 ~~~d~~p~~i~~~~i~p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~~g~~~alDa 214 (974)
.+.- ...|. .+. ..+. ..+...++|.++..+|-+.|.+ ...+| +.+ .+|+++.|.+
T Consensus 239 vVsG---------~~~p~----~~~---~~~~--~~p~~~~eL~~~a~~LE~~fg~--pqDIE---fai-~~g~L~iLQa 294 (530)
T PRK05878 239 VVSG---------LVDVA----PIT---ALRD--EQPAVYDELMAAARTLERLGRD--VQDIE---FTV-ESGKLWLLQT 294 (530)
T ss_pred HhcC---------CcCCc----chh---hhcc--cCHHHHHHHHHHHHHHHHHcCC--ceeEE---EEE-ECCEEEEEEe
Confidence 2221 11120 000 0111 1245677888888888887774 45566 666 5788999999
Q ss_pred EE
Q psy3769 215 KF 216 (974)
Q Consensus 215 ki 216 (974)
|=
T Consensus 295 Rp 296 (530)
T PRK05878 295 RS 296 (530)
T ss_pred ec
Confidence 84
No 411
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=28.57 E-value=35 Score=30.30 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.2
Q ss_pred eccccCeEEEec-CCcEeEEE--EEee
Q psy3769 941 WFNLIDCIVENI-HGKLLGTV--TEII 964 (974)
Q Consensus 941 ~~DLiG~~V~d~-~g~~lG~V--~~v~ 964 (974)
.+||.|.+|+|. +|..||.| .|+.
T Consensus 2 ~seL~~keVIni~~G~~lG~v~~~Dl~ 28 (76)
T TIGR02888 2 LSDLRGKEIINVNDGERLGVIGNIDLE 28 (76)
T ss_pred HHHccCCCEEECCCCcEeeccccceEE
Confidence 579999999994 79999999 6654
No 412
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.37 E-value=2.1e+02 Score=32.24 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=22.5
Q ss_pred ecCCCCCHHHHHHHHHHHhhcCCeEEEEE
Q psy3769 293 DIGGGATIKTITEAFKIMMQQNNLKTILV 321 (974)
Q Consensus 293 d~GG~a~~~~v~~a~~~il~~~~~~~i~v 321 (974)
.+..+.|.+++.+.++.+-+||++.+|+|
T Consensus 69 ~l~~~~t~~~l~~~I~~lN~D~~V~GIlv 97 (301)
T PRK14194 69 RLPADTSQARLLALIAELNADPSVNGILL 97 (301)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCCCCeEEE
Confidence 44566688888888888888888888876
No 413
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=28.04 E-value=2.2e+02 Score=30.18 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=50.8
Q ss_pred hhchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhcccch
Q psy3769 691 SIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEK----FSSIIILCSILLGYLSGNMIFSDQSL 764 (974)
Q Consensus 691 s~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~~----~~~l~~~~~~~l~~ig~~l~~~~~~~ 764 (974)
-+.+++.-.++|++.++..+--+..-..+.+..++..+...=..+++- .+.++.++..+|..+|.+|+..++.-
T Consensus 17 P~g~ip~f~~lt~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~ 94 (203)
T PF01914_consen 17 PIGNIPIFLSLTKGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSPSS 94 (203)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 356788888999876655544555555555555555444444444443 48899999999999999999966544
No 414
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=27.47 E-value=7.5e+02 Score=27.23 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=16.7
Q ss_pred ceeeecCCCCCH----HHHHHHHHHHhh
Q psy3769 289 ANFLDIGGGATI----KTITEAFKIMMQ 312 (974)
Q Consensus 289 anfld~GG~a~~----~~v~~a~~~il~ 312 (974)
|.++|+|+..+. ++|...++.+..
T Consensus 39 AdiIDVg~~~~~~eE~~r~~~~v~~l~~ 66 (261)
T PRK07535 39 ADYLDVNAGTAVEEEPETMEWLVETVQE 66 (261)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHHHH
Confidence 788999998764 346666666643
No 415
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=27.41 E-value=1.3e+02 Score=30.62 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=39.6
Q ss_pred HHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh--cCCCCEEEEecccC
Q psy3769 503 YIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK--NMKKPVIGFIAGIT 553 (974)
Q Consensus 503 ~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~--~~~KPVv~lk~Grs 553 (974)
+.+-|.++..++.++.|.+|+.+-|..-.++....++ ..++||+++-.|..
T Consensus 17 ~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~a 69 (162)
T cd07013 17 FAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLA 69 (162)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeeh
Confidence 4566778889999999999999988765666666665 55678988887765
No 416
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=27.27 E-value=2.2e+02 Score=33.31 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=56.0
Q ss_pred CCCCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccE-EEEEEccC
Q psy3769 458 HKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDA-VIMIGEIG 526 (974)
Q Consensus 458 ~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~-I~ly~E~~ 526 (974)
.+||.=.++.+.|.++.-..+++++.|.-...+-.--++ .++..|+-+.|.+||+.++ .+.|.|+-
T Consensus 77 ~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~---~v~p~~v~~~L~~~~~~~~V~~vH~ETS 143 (383)
T COG0075 77 VEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE---AVDPEEVEEALDKDPDIKAVAVVHNETS 143 (383)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC---CCCHHHHHHHHhcCCCccEEEEEeccCc
Confidence 567999999999999999999999999988777766666 5899999999999988855 55679963
No 417
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=27.19 E-value=9.8e+02 Score=29.05 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=81.0
Q ss_pred EecchhHHHHHHHHHH-cCCcEEEEEcCCCChH---HHHHHHHHHhcCCCCceEEccCCccccccCc-cc-------cc-
Q psy3769 385 YVPAIFATSAIWEAIE-SELELVICITEGIPVR---DMLILKNKMKKNNSKTLLLGPNCPGLIVPEE-IK-------IG- 451 (974)
Q Consensus 385 ~vp~~~v~~~v~e~~~-~gv~~~vi~s~G~~e~---~~~~l~~~a~~~~~gi~viGPnc~G~~~~~~-~~-------~~- 451 (974)
+=-.+.+.++++++.+ ...+.++++++..++. +...+.+.++ ..+++++..+|.|+-.... +. ..
T Consensus 67 ~G~~~~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~~~~~~~--~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~ 144 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGNLAAAAG--LDKSKVIVADVNAYRRKENQAADRTLTQLVRR 144 (511)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHhc--cCCCcEEEecCCCcccchhHHHHHHHHHHHHH
Confidence 3345777777777775 3566667777665543 2333444444 3367788888887655421 11 00
Q ss_pred cCCC-C----CCCCCCEEEEeCCh------hhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccE-E
Q psy3769 452 IMPG-N----IHKKGRIGVVSRSG------TLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDA-V 519 (974)
Q Consensus 452 ~~~~-~----~~~~G~va~vSQSG------~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~-I 519 (974)
+..+ . ...++.|-++.-+- +=..++-..++..|+....+++.|.. +.|+-+. |+-.. |
T Consensus 145 ~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s------~~dl~~l----~~A~~NI 214 (511)
T TIGR01278 145 FAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGAS------IADLARL----PAAWLNI 214 (511)
T ss_pred HHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCC------HHHHHhc----ccCcEEE
Confidence 1111 0 12456677775431 22356667777777776666664443 4554443 33222 4
Q ss_pred EEEEccCCCchHHHHHHHHhcCCCCEEE
Q psy3769 520 IMIGEIGGLDEIYAANWIKKNMKKPVIG 547 (974)
Q Consensus 520 ~ly~E~~g~~~~~~~~f~~~~~~KPVv~ 547 (974)
++|-|.. ....++++..-+.|.+.
T Consensus 215 v~~~~~g----~~~A~~Le~~fGiP~i~ 238 (511)
T TIGR01278 215 CPYREIG----LMAAEYLKEKFGQPYIT 238 (511)
T ss_pred EechHHH----HHHHHHHHHHhCCCccc
Confidence 5566643 45677777667889753
No 418
>PRK11111 hypothetical protein; Provisional
Probab=26.78 E-value=2.3e+02 Score=30.26 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=47.1
Q ss_pred hchHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhhc
Q psy3769 692 IDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIE----KFSSIIILCSILLGYLSGNMIFS 760 (974)
Q Consensus 692 ~Dsv~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~~----~~~~l~~~~~~~l~~ig~~l~~~ 760 (974)
+-++|.-.++|++.++..+--+..-+.+.+..++..+...=..+++ ..|.++.++..+|..+|.+|+..
T Consensus 24 ig~ipiflslt~~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 24 VGILPVFISMTSHQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred chhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 4577888888886665555556666655555555544333333343 34899999999999999999864
No 419
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=26.74 E-value=1.2e+02 Score=33.32 Aligned_cols=88 Identities=13% Similarity=-0.007 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE---------------ccCCccccccCcc-c----cc
Q psy3769 392 TSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL---------------GPNCPGLIVPEEI-K----IG 451 (974)
Q Consensus 392 ~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi---------------GPnc~G~~~~~~~-~----~~ 451 (974)
+.-+.|+...|+.+++++..-...++..++.+.|+ +.||..+ |+.-+|+-|-.-. + ..
T Consensus 114 ~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~--~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~ 191 (247)
T PRK13957 114 EIQIREARAFGASAILLIVRILTPSQIKSFLKHAS--SLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNL 191 (247)
T ss_pred HHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHH--HcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHH
Confidence 34455555566666655555544444444555555 5554433 5555565554311 1 11
Q ss_pred cCCCCCCCCCCEEEEeCChhhHHHHHHHHH
Q psy3769 452 IMPGNIHKKGRIGVVSRSGTLTYEVVCQLT 481 (974)
Q Consensus 452 ~~~~~~~~~G~va~vSQSG~~~~~~~~~~~ 481 (974)
+.--.+.-|..+-+||-||=-..+=+.+++
T Consensus 192 ~~~L~~~ip~~~~~IsESGI~t~~d~~~l~ 221 (247)
T PRK13957 192 VEEVAAFLPPNIVKVGESGIESRSDLDKFR 221 (247)
T ss_pred HHHHHhhCCCCcEEEEcCCCCCHHHHHHHH
Confidence 100011234678899999987766444443
No 420
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.63 E-value=1.7e+02 Score=28.71 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=41.1
Q ss_pred CCCcEEEEEe----cchhHHHHHHHHHHcCCcEEEEEcCCC---ChHHHHHHHHHHhcCCCCc-eEEccCC
Q psy3769 377 TGATVSVIYV----PAIFATSAIWEAIESELELVICITEGI---PVRDMLILKNKMKKNNSKT-LLLGPNC 439 (974)
Q Consensus 377 ~~vDlavi~v----p~~~v~~~v~e~~~~gv~~~vi~s~G~---~e~~~~~l~~~a~~~~~gi-~viGPnc 439 (974)
+.+|++-++. .-...+++++++.++|.+.+.++-+|. ++++.++-.+..+ +.|+ ++.||.+
T Consensus 49 ~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~--~~Gv~~vf~pgt 117 (128)
T cd02072 49 TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFK--EMGFDRVFAPGT 117 (128)
T ss_pred cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHH--HcCCCEEECcCC
Confidence 5788876653 334567888888889986676666664 5555443445667 7787 4778765
No 421
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=26.33 E-value=75 Score=31.63 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=29.8
Q ss_pred ccccccccccchhhhcc---cCCCcEEEEEecch---hHHHHHHHHHHcCCcE
Q psy3769 359 QKFEEIPIFDTVKNAKN---ETGATVSVIYVPAI---FATSAIWEAIESELEL 405 (974)
Q Consensus 359 ~~i~G~~~y~sl~dip~---~~~vDlavi~vp~~---~v~~~v~e~~~~gv~~ 405 (974)
+++.|.|...+++|+++ ++.+|-++++.|.+ .+.+++++|-+.|++-
T Consensus 119 ~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 119 PEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp -EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EE
T ss_pred CcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEE
Confidence 45678999988888863 25899999998764 5677888888888874
No 422
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=26.22 E-value=5.3e+02 Score=26.81 Aligned_cols=147 Identities=12% Similarity=0.009 Sum_probs=67.4
Q ss_pred cchhhhcccCCCcEEEEEecch--hHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCcc----
Q psy3769 368 DTVKNAKNETGATVSVIYVPAI--FATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPG---- 441 (974)
Q Consensus 368 ~sl~dip~~~~vDlavi~vp~~--~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G---- 441 (974)
..+.+.-.....++.+.....+ ...+.++++...++.++++. ...+.. .. .+.++ +.|+.++..++.-
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~-~~~~~~-~~--~~~~~--~~~ipvv~~~~~~~~~~ 92 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILA-PSRLDD-EL--LEELA--ALGIPVVLVDRPLDGLG 92 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEe-cCCcch-HH--HHHHH--HcCCCEEEecccccCCC
Confidence 3444333223455544433221 24566777777777764443 222221 11 34455 6677777665431
Q ss_pred --ccccCccccccCC-C--CCCCCCCEEEEeCChh--hH----HHHHHHHHHcCCce--EEEeecCCCCCCCCCHHHHHH
Q psy3769 442 --LIVPEEIKIGIMP-G--NIHKKGRIGVVSRSGT--LT----YEVVCQLTELGFGQ--SSAVGIGGDPINGLKYIDILK 508 (974)
Q Consensus 442 --~~~~~~~~~~~~~-~--~~~~~G~va~vSQSG~--~~----~~~~~~~~~~g~g~--s~~vs~Gn~a~~dv~~~d~l~ 508 (974)
.+.......+... . .....++|++++.+.. .. ..+.+.+++.+.-+ ......... .+-....+-+
T Consensus 93 ~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 170 (264)
T cd06267 93 VDSVGIDNRAGAYLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFS--EESGYEAARE 170 (264)
T ss_pred CCEEeeccHHHHHHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccc--hhhHHHHHHH
Confidence 0111100000000 0 0113457888876544 21 22334445555322 223333322 1334555667
Q ss_pred HhhhCCCccEEEEE
Q psy3769 509 LFNEDQNTDAVIMI 522 (974)
Q Consensus 509 ~l~~Dp~t~~I~ly 522 (974)
++.+.|..++|+..
T Consensus 171 ~l~~~~~~~~i~~~ 184 (264)
T cd06267 171 LLASGERPTAIFAA 184 (264)
T ss_pred HHhcCCCCcEEEEc
Confidence 78888877777765
No 423
>PRK10433 putative RNA methyltransferase; Provisional
Probab=26.17 E-value=3.2e+02 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=26.5
Q ss_pred CeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCC
Q psy3769 315 NLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKK 356 (974)
Q Consensus 315 ~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~ 356 (974)
++++|||+... ++..|. +.+.+..+|+. .++-|||+.
T Consensus 2 ~i~vVLv~p~~-p~NiGa-iaRam~nfG~~---~L~lV~p~~ 38 (228)
T PRK10433 2 RLTIILVAPAR-AENVGA-AARAMKTMGFS---ELRIVDSQA 38 (228)
T ss_pred ceEEEEEcCCC-CccHHH-HHHHHHHCCCC---EEEEeCCCC
Confidence 46778877654 333443 56778888999 699999995
No 424
>KOG4039|consensus
Probab=26.02 E-value=1.4e+02 Score=30.97 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=57.3
Q ss_pred cccccCcccccchhhhhccC-CCCceEEEEecCCCC-----Ccc-ccccccccchhhhccc-CCCcEEEEE---------
Q psy3769 323 IFGITGKTGRFHTNLCLNYG-NGKKAFVAGVNPKKN-----GQK-FEEIPIFDTVKNAKNE-TGATVSVIY--------- 385 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g-~~g~~~V~pVnP~~~-----g~~-i~G~~~y~sl~dip~~-~~vDlavi~--------- 385 (974)
+.|.|+-.|...++.+++.+ |. .||.+-.+.- ++. +.-..-|.-+++..+. ..+|++..+
T Consensus 23 vlGAtG~~G~~llk~~~E~~~FS---KV~~i~RR~~~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTRgkaG 99 (238)
T KOG4039|consen 23 VLGATGLCGGGLLKHAQEAPQFS---KVYAILRRELPDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGTTRGKAG 99 (238)
T ss_pred EEeccccccHHHHHHHHhcccce---eEEEEEeccCCCccccceeeeEEechHHHHHHHhhhcCCceEEEeecccccccc
Confidence 36889999999999999877 66 5776644410 011 1112223444444322 378888766
Q ss_pred ------ecchhHHHHHHHHHHcCCcEEEEEcC
Q psy3769 386 ------VPAIFATSAIWEAIESELELVICITE 411 (974)
Q Consensus 386 ------vp~~~v~~~v~e~~~~gv~~~vi~s~ 411 (974)
+..+.+....+.|-+.|++..+++|+
T Consensus 100 adgfykvDhDyvl~~A~~AKe~Gck~fvLvSS 131 (238)
T KOG4039|consen 100 ADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSS 131 (238)
T ss_pred cCceEeechHHHHHHHHHHHhCCCeEEEEEec
Confidence 44567888888888999999998886
No 425
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=25.94 E-value=80 Score=35.48 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=45.4
Q ss_pred cccccCcccccchhhhhccCCCCceEEEEecCCCCCccc----------------cc-------------cccccchhhh
Q psy3769 323 IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKF----------------EE-------------IPIFDTVKNA 373 (974)
Q Consensus 323 i~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i----------------~G-------------~~~y~sl~di 373 (974)
|+| .|.+|..+..++.+.|++ |..+++.. +.. .| +....+++++
T Consensus 7 VIG-~G~mG~~iA~~la~~G~~----V~v~d~~~--~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 7 IIG-AGLIGRAWAIVFARAGHE----VRLWDADP--AAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred EEC-ccHHHHHHHHHHHHCCCe----eEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence 356 456777777777777876 55555542 111 12 2455677776
Q ss_pred cccCCCcEEEEEecch--hHHHHHHHHHHcCCcEEEEEc
Q psy3769 374 KNETGATVSVIYVPAI--FATSAIWEAIESELELVICIT 410 (974)
Q Consensus 374 p~~~~vDlavi~vp~~--~v~~~v~e~~~~gv~~~vi~s 410 (974)
.+ ..|+++.++|.+ .-..+++++.+..-+.+++.+
T Consensus 80 ~~--~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~s 116 (308)
T PRK06129 80 VA--DADYVQESAPENLELKRALFAELDALAPPHAILAS 116 (308)
T ss_pred hC--CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEE
Confidence 55 789999999875 233444554433333444443
No 426
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=25.77 E-value=1.2e+02 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy3769 711 MLLVIIGILFSIPIIIFGSKLVLILIEKFSSIII 744 (974)
Q Consensus 711 ~~li~~g~~~~i~~l~~~~~~~~~~~~~~~~l~~ 744 (974)
..+-++||++.+|.+.++...+.+++.|.|+++.
T Consensus 20 ~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~ 53 (121)
T PF06695_consen 20 FLLAFLGNILPVPFILLFLDKILKWLKRKPWLKK 53 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5667899999999999999999999888888774
No 427
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=25.63 E-value=1.5e+02 Score=33.09 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=52.9
Q ss_pred eEeecCCeEEEEecCcchhhHHHHHHHhcCCCCceeeecCCCCCH-HHHHHHHHHHhhcCCeEEEE
Q psy3769 256 TYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATI-KTITEAFKIMMQQNNLKTIL 320 (974)
Q Consensus 256 ~yv~l~G~Ig~~~nGaGlam~t~D~i~~~gg~panfld~GG~a~~-~~v~~a~~~il~~~~~~~i~ 320 (974)
.++-..|+||++.--+.|+-=..-.+...|.=-.--.-+||.+=. .+...+++....||++++|+
T Consensus 140 ~~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~iv 205 (293)
T COG0074 140 GNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIV 205 (293)
T ss_pred hhhccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEE
Confidence 456669999999999999999999999888666666777777433 55777899999999999974
No 428
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=25.24 E-value=1.4e+02 Score=35.17 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=30.9
Q ss_pred CCcEEEEEecc----------hhHHHHHHHHHHc-CCcEEEEEcCCCChHHHHHHHHHHh
Q psy3769 378 GATVSVIYVPA----------IFATSAIWEAIES-ELELVICITEGIPVRDMLILKNKMK 426 (974)
Q Consensus 378 ~vDlavi~vp~----------~~v~~~v~e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~ 426 (974)
..|++++++|. +.+.+++++..+. .-..+|+..+..+....+++.+..+
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~ 134 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLA 134 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 58999999997 4777777666653 2234566666555434444555454
No 429
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=25.12 E-value=1e+03 Score=27.04 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=39.0
Q ss_pred CCCCEEEEeCChhhHH----HHHHHHHHcCC----ceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccCCCch
Q psy3769 459 KKGRIGVVSRSGTLTY----EVVCQLTELGF----GQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIGGLDE 530 (974)
Q Consensus 459 ~~G~va~vSQSG~~~~----~~~~~~~~~g~----g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~ 530 (974)
..-.|++|.++...+. .+...++++|+ -+......-.. +.++...+.-+.. .+.++|+++...
T Consensus 153 ~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~---~~d~~~~l~~ik~-~~~~vIvl~~~~----- 223 (377)
T cd06379 153 KWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPG---EKNVTSLLQEAKE-LTSRVILLSASE----- 223 (377)
T ss_pred CCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCc---hhhHHHHHHHHhh-cCCeEEEEEcCH-----
Confidence 3456888877766433 33344445565 43443333222 3456666666543 466777766654
Q ss_pred HHHHHHHHh
Q psy3769 531 IYAANWIKK 539 (974)
Q Consensus 531 ~~~~~f~~~ 539 (974)
.++..+++.
T Consensus 224 ~~~~~l~~q 232 (377)
T cd06379 224 DDAAVIYRN 232 (377)
T ss_pred HHHHHHHHH
Confidence 456666665
No 430
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=24.52 E-value=78 Score=36.51 Aligned_cols=52 Identities=29% Similarity=0.289 Sum_probs=28.2
Q ss_pred EEEEeeeecCcccccC-eEEEeCCHHHHHHHHHHHHhccccccccCCCCCceeEEEEEEEec
Q psy3769 43 WVIKAQIHAGGRGKCG-GIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYID 103 (974)
Q Consensus 43 vVvK~qi~~ggrgk~G-GV~l~~s~ee~~~a~~~~l~~~~~t~q~~~~g~~~~~vLVee~v~ 103 (974)
|+||++- |--| ||..++|.+|+..--++-.++-. ..+.|.+++.|+|||-+.
T Consensus 263 V~VKAD~-----GTYGMGImtV~~~~ev~~LNrK~RnKM~----~~Keg~~v~~VIIQEGV~ 315 (404)
T PF08886_consen 263 VFVKADA-----GTYGMGIMTVKSGDEVLGLNRKQRNKMS----VIKEGLEVSEVIIQEGVY 315 (404)
T ss_dssp EEEEEE------GGG-EEEEEESSGGGGSS--HHHHHHHH-----SSSSS---EEEEEE---
T ss_pred EEEEcCC-----CCCCceEEEecCHHHHHHHhHHHhhhhh----hhcCCCccceeEEecCcc
Confidence 6889974 3333 89889999998653333222111 234688999999999764
No 431
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=24.47 E-value=3.3e+02 Score=30.79 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=57.6
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchh-HHHHHH--HHHHcCCc
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIF-ATSAIW--EAIESELE 404 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~--e~~~~gv~ 404 (974)
|+.|..+.+.+..+|.+ |..++|.. .....+.+ |.+++++-. .-|++++.+|... +...+. +....+-.
T Consensus 154 G~IG~~vA~~~~~fgm~----V~~~d~~~-~~~~~~~~-~~~l~ell~--~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~ 225 (311)
T PRK08410 154 GTIGKRVAKIAQAFGAK----VVYYSTSG-KNKNEEYE-RVSLEELLK--TSDIISIHAPLNEKTKNLIAYKELKLLKDG 225 (311)
T ss_pred CHHHHHHHHHHhhcCCE----EEEECCCc-cccccCce-eecHHHHhh--cCCEEEEeCCCCchhhcccCHHHHHhCCCC
Confidence 56788888888776665 77888863 12223443 679999976 7899999999542 222222 22223433
Q ss_pred EEEEEcCCCC-hHHHHHHHHHHhcCCCCce
Q psy3769 405 LVICITEGIP-VRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 405 ~~vi~s~G~~-e~~~~~l~~~a~~~~~gi~ 433 (974)
+ +++.-+-. --+++.|.+..+ +..++
T Consensus 226 a-~lIN~aRG~vVDe~AL~~AL~--~g~i~ 252 (311)
T PRK08410 226 A-ILINVGRGGIVNEKDLAKALD--EKDIY 252 (311)
T ss_pred e-EEEECCCccccCHHHHHHHHH--cCCeE
Confidence 4 44443322 234566777777 65555
No 432
>PRK12483 threonine dehydratase; Reviewed
Probab=24.43 E-value=1.1e+02 Score=37.12 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=68.8
Q ss_pred EEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCC--ceEEccCCccccccCccc---cc-cCCC
Q psy3769 382 SVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSK--TLLLGPNCPGLIVPEEIK---IG-IMPG 455 (974)
Q Consensus 382 avi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~g--i~viGPnc~G~~~~~~~~---~~-~~~~ 455 (974)
+|-+....+...+.-.|...|+++.|++..+.+.... +..| .+| +.+.|++.-.-+.....+ .+ .+.+
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv----~~~r--~~GAeVil~g~~~d~a~~~A~~la~e~g~~~v~ 161 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKV----DGVR--AHGGEVVLHGESFPDALAHALKLAEEEGLTFVP 161 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH----HHHH--HCCCEEEEECCCHHHHHHHHHHHHHhcCCeeeC
Confidence 3444455666667777777899998888888775442 3344 455 444465432221111111 01 1111
Q ss_pred CCCCCCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEccC
Q psy3769 456 NIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEIG 526 (974)
Q Consensus 456 ~~~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~~ 526 (974)
....|-.++ .| |+++.++++.+... +. .-++++|+-- .-.+++-++..+ .|++|+|++--|+-
T Consensus 162 pfdd~~via--Gq-gTig~EI~eQ~~~~-~D-~VvvpvGgGG-liaGia~~~K~~--~p~vkVIGVep~~a 224 (521)
T PRK12483 162 PFDDPDVIA--GQ-GTVAMEILRQHPGP-LD-AIFVPVGGGG-LIAGIAAYVKYV--RPEIKVIGVEPDDS 224 (521)
T ss_pred CCCChHHHH--HH-HHHHHHHHHHhCCC-CC-EEEEecCccH-HHHHHHHHHHHh--CCCCEEEEEEeCCC
Confidence 001122222 35 89999998765321 21 3456666641 112344444433 69999999988853
No 433
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=24.01 E-value=1.4e+02 Score=34.90 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCcEEEEEcCC------CChHHHHHHHHHHhcCCCCceEEccCCcccccc
Q psy3769 392 TSAIWEAIESELELVICITEG------IPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVP 445 (974)
Q Consensus 392 ~~~v~e~~~~gv~~~vi~s~G------~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~ 445 (974)
.+.+++++....|.+++.+.+ ++.++.++|++.|+ ++++-|+-..|--=+..
T Consensus 153 ~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~--~~~i~ii~DEiY~~l~y 210 (393)
T COG0436 153 LEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAR--EHDIIIISDEIYEELVY 210 (393)
T ss_pred HHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHH--HcCeEEEEehhhhhccc
Confidence 667888888889986666653 34555688999999 99999999888744433
No 434
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=23.69 E-value=3.8e+02 Score=23.84 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=36.0
Q ss_pred HHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH-Hhhh--hHHHHHHHHH
Q psy3769 696 LAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILI-EKFS--SIIILCSILL 750 (974)
Q Consensus 696 ~a~~~~t~~~~~~~~~~li~~g~~~~i~~l~~~~~~~~~~~-~~~~--~l~~~~~~~l 750 (974)
+++++++.. ++++++.++.|..++...+-..+-++.+++ ++.| ++++++..+.
T Consensus 19 l~t~~La~~--~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lF 74 (78)
T PF01169_consen 19 LATIALAAR--YPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALF 74 (78)
T ss_pred HHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 344445442 224799999999999999999999998877 4443 4444444433
No 435
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.68 E-value=3e+02 Score=29.40 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=61.5
Q ss_pred hcCCeEEEEEccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhH
Q psy3769 312 QQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFA 391 (974)
Q Consensus 312 ~~~~~~~i~vni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v 391 (974)
.+.++-+|+ -+.+......+.+.+.+.|++-- .|...+| . ....++++-+. -+|+. |-.---..
T Consensus 13 ~~~~~iaV~---r~~~~~~a~~i~~al~~~Gi~~i-Eitl~~~-------~---~~~~I~~l~~~-~p~~~-IGAGTVl~ 76 (212)
T PRK05718 13 RAGPVVPVI---VINKLEDAVPLAKALVAGGLPVL-EVTLRTP-------A---ALEAIRLIAKE-VPEAL-IGAGTVLN 76 (212)
T ss_pred HHCCEEEEE---EcCCHHHHHHHHHHHHHcCCCEE-EEecCCc-------c---HHHHHHHHHHH-CCCCE-EEEeeccC
Confidence 445566663 44444455667788889898831 1221222 1 23444444332 23533 33333334
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCc
Q psy3769 392 TSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCP 440 (974)
Q Consensus 392 ~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~ 440 (974)
++.++++.++|.+. ++|.++.. ++.+.|+ ++++.++ |.|+
T Consensus 77 ~~~a~~a~~aGA~F--ivsP~~~~----~vi~~a~--~~~i~~i-PG~~ 116 (212)
T PRK05718 77 PEQLAQAIEAGAQF--IVSPGLTP----PLLKAAQ--EGPIPLI-PGVS 116 (212)
T ss_pred HHHHHHHHHcCCCE--EECCCCCH----HHHHHHH--HcCCCEe-CCCC
Confidence 57899999999985 77888864 4568898 8898887 4443
No 436
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=23.65 E-value=2.2e+02 Score=25.67 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=32.5
Q ss_pred cEEEEEecchhHHHHHHHHHHcCCcEEEEEcCC--CChHHHHHHHHHHhcCCCCceEEc
Q psy3769 380 TVSVIYVPAIFATSAIWEAIESELELVICITEG--IPVRDMLILKNKMKKNNSKTLLLG 436 (974)
Q Consensus 380 Dlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G--~~e~~~~~l~~~a~~~~~gi~viG 436 (974)
|..++=.||-.-...+.-+-......++++|.. .+..+.++..+.++ +.+++++|
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~--~~~vpilG 58 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFR--KLNVPILG 58 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHH--CTT-EEEE
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHH--hcCCCcEE
Confidence 677888888665444444444446667777754 34556677889999 99999987
No 437
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=23.58 E-value=1.1e+02 Score=37.39 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=57.2
Q ss_pred CcccccchhhhhccCCCCceEEEEecCCCCCc--cccccccccchhhhcccCCCcEEEEEecch-hHHHHH-HHHHH-cC
Q psy3769 328 GKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQ--KFEEIPIFDTVKNAKNETGATVSVIYVPAI-FATSAI-WEAIE-SE 402 (974)
Q Consensus 328 ~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~--~i~G~~~y~sl~dip~~~~vDlavi~vp~~-~v~~~v-~e~~~-~g 402 (974)
|..|..+.+.+..+|++ |+.++|....+ .-.|.+.. +++|+-. ..|++++++|.. .+...+ ++..+ ..
T Consensus 149 G~IG~~vA~~l~~fG~~----V~~~d~~~~~~~~~~~g~~~~-~l~ell~--~aDiV~l~lP~t~~t~~li~~~~l~~mk 221 (526)
T PRK13581 149 GRIGSEVAKRAKAFGMK----VIAYDPYISPERAAQLGVELV-SLDELLA--RADFITLHTPLTPETRGLIGAEELAKMK 221 (526)
T ss_pred CHHHHHHHHHHHhCCCE----EEEECCCCChhHHHhcCCEEE-cHHHHHh--hCCEEEEccCCChHhhcCcCHHHHhcCC
Confidence 56788888899888876 78888743111 22455544 8999976 789999999974 344444 22332 23
Q ss_pred CcEEEEEcCCC-ChHHHHHHHHHHhcCCCCce
Q psy3769 403 LELVICITEGI-PVRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 403 v~~~vi~s~G~-~e~~~~~l~~~a~~~~~gi~ 433 (974)
-.+ +++.-+- +--++..|.+..+ +..++
T Consensus 222 ~ga-~lIN~aRG~~vde~aL~~aL~--~g~i~ 250 (526)
T PRK13581 222 PGV-RIINCARGGIIDEAALAEALK--SGKVA 250 (526)
T ss_pred CCe-EEEECCCCceeCHHHHHHHHh--cCCee
Confidence 334 3443322 2234556667676 44443
No 438
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=23.58 E-value=1.7e+02 Score=24.65 Aligned_cols=43 Identities=16% Similarity=0.055 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 390 FATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 390 ~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
...+.++.|.+.|.+. +.++....-.+..++.+.++ +.|++++
T Consensus 16 ~~~~~~~~a~~~g~~~-v~iTDh~~~~~~~~~~~~~~--~~gi~~i 58 (67)
T smart00481 16 SPEELVKRAKELGLKA-IAITDHGNLFGAVEFYKAAK--KAGIKPI 58 (67)
T ss_pred CHHHHHHHHHHcCCCE-EEEeeCCcccCHHHHHHHHH--HcCCeEE
Confidence 3568999999999997 77787654344456678888 7888765
No 439
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=23.53 E-value=1.1e+02 Score=29.19 Aligned_cols=94 Identities=12% Similarity=-0.021 Sum_probs=48.5
Q ss_pred EecchhHHHHHHHHHHcCCcEEEEEcCCCChH---HHHHHHHHHhcCCCCceEE-ccCCccccccCccccccCCCCCCCC
Q psy3769 385 YVPAIFATSAIWEAIESELELVICITEGIPVR---DMLILKNKMKKNNSKTLLL-GPNCPGLIVPEEIKIGIMPGNIHKK 460 (974)
Q Consensus 385 ~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~---~~~~l~~~a~~~~~gi~vi-GPnc~G~~~~~~~~~~~~~~~~~~~ 460 (974)
++.+.-.++-+++..+.|+|.+|.+...-.+. ...++.+.|+ +.||..+ =|=..+-++...- ..+...-.-.+
T Consensus 10 ~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~--~~Gl~y~~iPv~~~~~~~~~v-~~f~~~l~~~~ 86 (110)
T PF04273_consen 10 SVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAE--ALGLQYVHIPVDGGAITEEDV-EAFADALESLP 86 (110)
T ss_dssp EEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHH--HCT-EEEE----TTT--HHHH-HHHHHHHHTTT
T ss_pred EECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHH--HcCCeEEEeecCCCCCCHHHH-HHHHHHHHhCC
Confidence 34445567889999999999988886432111 1234568888 8999865 3333333333211 01100001135
Q ss_pred CCEEEEeCChhhHHHHHHHHH
Q psy3769 461 GRIGVVSRSGTLTYEVVCQLT 481 (974)
Q Consensus 461 G~va~vSQSG~~~~~~~~~~~ 481 (974)
|+|=+-..||+=+..+...++
T Consensus 87 ~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 87 KPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp TSEEEE-SCSHHHHHHHHHHH
T ss_pred CCEEEECCCChhHHHHHHHHh
Confidence 889999999999988876544
No 440
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=23.40 E-value=3.8e+02 Score=29.07 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcC---CCCCCceeeCCHHHHHHHHHHcCCCcEEEEeeeecCcccccCeEEEeC-----CHHHHHHHHHHH
Q psy3769 5 EYQGKEILRKFN---VTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQ-----SLEQVEKYTKKI 76 (974)
Q Consensus 5 E~~ak~lL~~~G---Ipvp~~~~~~s~eea~~~a~~ig~~PvVvK~qi~~ggrgk~GGV~l~~-----s~ee~~~a~~~~ 76 (974)
-|.+|+.+++.+ .-+|--.+.+++++..- ..+. .++|+|+. | .+|++.++. +.++++..+.++
T Consensus 21 K~~VR~yv~~~~g~~~l~pll~v~~~~~~i~~--~~Lp-~~fViK~n--h----gsg~~~i~~dk~~~d~~~~~~~~~~w 91 (239)
T PF14305_consen 21 KYAVREYVEEKIGEEYLPPLLGVYDNPDDIDF--DSLP-DKFVIKPN--H----GSGSNIIVRDKSKLDIEEAKKKLNRW 91 (239)
T ss_pred HHHHHHHHHHhCCCceECceeecCCChhhhhh--hcCC-CCEEEEEe--c----CCCcEEEEeCCcccCHHHHHHHHHHH
Confidence 467788888876 33454556677766532 2466 68999994 2 223444433 344555555555
Q ss_pred Hhccccc-cccCCCCCceeEEEEEEEec
Q psy3769 77 LGMQLIT-SQTNQEGENVFCVLIEEYID 103 (974)
Q Consensus 77 l~~~~~t-~q~~~~g~~~~~vLVee~v~ 103 (974)
+...... ...-+...--..++||+++.
T Consensus 92 l~~~~~~~~~E~~Y~~i~prIivE~~l~ 119 (239)
T PF14305_consen 92 LKKDYYYQSREWHYKNIKPRIIVEELLE 119 (239)
T ss_pred hhhccccccccccCcCCCceEEEEeccc
Confidence 5542210 00011223346899999884
No 441
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=23.14 E-value=2e+02 Score=33.67 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=34.6
Q ss_pred hhhhcccCCCcEEEEEecch-----------hHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCce
Q psy3769 370 VKNAKNETGATVSVIYVPAI-----------FATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTL 433 (974)
Q Consensus 370 l~dip~~~~vDlavi~vp~~-----------~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~ 433 (974)
.+++.. ..|++++++|.. .+.+++++..+..-..+++..+-.+....+++.+..+ +.++.
T Consensus 67 ~~~~~~--~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~--~~~v~ 137 (388)
T PRK15057 67 KNEAYR--DADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYR--TENII 137 (388)
T ss_pred hhhhhc--CCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhh--cCcEE
Confidence 344444 789999999954 5556666555533334555555444333455555555 55543
No 442
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=23.14 E-value=4e+02 Score=30.03 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=69.7
Q ss_pred CcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCC--ceEEccCCccccccCccccccCCCC
Q psy3769 379 ATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSK--TLLLGPNCPGLIVPEEIKIGIMPGN 456 (974)
Q Consensus 379 vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~g--i~viGPnc~G~~~~~~~~~~~~~~~ 456 (974)
=|.++....+..+...++++.+.|-+.-|++.++.|..+-..+.+... +.| +.++=.+++|.+-+...+...-...
T Consensus 116 g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~--~~gI~vtlI~Dsa~~~~m~~vd~VivGad~ 193 (301)
T TIGR00511 116 GDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELR--DYGIPVTLIVDSAVRYFMKEVDHVVVGADA 193 (301)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHH--HCCCCEEEEehhHHHHHHHhCCEEEECccE
Confidence 355666667788899999999888777788888877544355556666 555 4577777777655432221111111
Q ss_pred CCCCCCEEEEeCChhhHHHHHHHHHHcCCceEEEeec
Q psy3769 457 IHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGI 493 (974)
Q Consensus 457 ~~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~ 493 (974)
...-|. ++..+|+...+++ |++.++.|--+..+
T Consensus 194 v~~nG~--v~nkiGT~~lA~~--Ak~~~vPv~V~a~~ 226 (301)
T TIGR00511 194 ITANGA--LINKIGTSQLALA--AREARVPFMVAAET 226 (301)
T ss_pred EecCCC--EEEHHhHHHHHHH--HHHhCCCEEEEccc
Confidence 223343 5689999988875 56778877554443
No 443
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=22.75 E-value=3.4e+02 Score=33.31 Aligned_cols=96 Identities=7% Similarity=-0.065 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEccccccCccc-ccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhccc-C
Q psy3769 300 IKTITEAFKIMMQQNNLKTILVNIFGITGKTG-RFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNE-T 377 (974)
Q Consensus 300 ~~~v~~a~~~il~~~~~~~i~vni~G~~~k~G-~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~-~ 377 (974)
+.++..++..+.++.+.++.|+.-.|...-.+ ..+.+.|. .+|+ |.++|+.. .. ..-+++|+. .
T Consensus 168 Ey~lt~aI~~v~~~~~~~V~~l~ghGE~~~~~~~~l~~~L~-~~y~----v~~l~l~~--~~-------~~~~~ip~~l~ 233 (552)
T TIGR03521 168 EYEFADAISKLINPREKRIAVLKGNGELADLQIADLVSTLK-EYYF----IAPFTLDS--VA-------ANPAKTLADLK 233 (552)
T ss_pred HHHHHHHHHHHhCccCceEEEEeCCCCCChHHHHHHHHHHH-hcCc----eeeecchh--cc-------cCccccccccc
Confidence 45678888999888878877776666322111 22334444 6776 78898874 11 000233321 1
Q ss_pred CCcEEEEEecc----hhHHHHHHHHHHcCCcEEEEE
Q psy3769 378 GATVSVIYVPA----IFATSAIWEAIESELELVICI 409 (974)
Q Consensus 378 ~vDlavi~vp~----~~v~~~v~e~~~~gv~~~vi~ 409 (974)
+.|+.+|+-|. +.-...+++-+.+|=|.++++
T Consensus 234 d~d~LvI~~P~~~ls~~e~~~Ldqfl~~GG~ll~~~ 269 (552)
T TIGR03521 234 KFDLIVIAKPTEAFSEREKYILDQYIMNGGKALFLV 269 (552)
T ss_pred CcCEEEEeCCCccCCHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999997 445678899999998864444
No 444
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.39 E-value=1.7e+02 Score=32.36 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=26.5
Q ss_pred ccchhhhcccCCCcEEEEEecchhH--HHHHHHHHHc-CCcEEE-EEcCCCChH
Q psy3769 367 FDTVKNAKNETGATVSVIYVPAIFA--TSAIWEAIES-ELELVI-CITEGIPVR 416 (974)
Q Consensus 367 y~sl~dip~~~~vDlavi~vp~~~v--~~~v~e~~~~-gv~~~v-i~s~G~~e~ 416 (974)
..+.+++ + ..|++++++|.+.. .+++++..+. .-..++ -.++|.+.+
T Consensus 74 ~~~~~~~-~--~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 74 TTDLDDL-K--DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred eCCHHHh-c--cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 4455554 2 68999999987544 4566665442 223333 223565544
No 445
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=22.38 E-value=9.1e+02 Score=26.77 Aligned_cols=62 Identities=8% Similarity=0.004 Sum_probs=32.3
Q ss_pred chhhhcccCCCcEEEEEec--chhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEE
Q psy3769 369 TVKNAKNETGATVSVIYVP--AIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLL 435 (974)
Q Consensus 369 sl~dip~~~~vDlavi~vp--~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~vi 435 (974)
.+++.-.+...++.+.... ++...+.++.+.+.++.++++.... .. .....+.++ +.+++++
T Consensus 85 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~--~~~~~~~l~--~~~iPvV 148 (342)
T PRK10014 85 GLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA-GS--SDDLREMAE--EKGIPVV 148 (342)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-CC--cHHHHHHHh--hcCCCEE
Confidence 3444433345555544332 2234566777778888886665432 11 122345555 6676654
No 446
>PRK08374 homoserine dehydrogenase; Provisional
Probab=21.88 E-value=1.6e+02 Score=33.67 Aligned_cols=73 Identities=14% Similarity=-0.022 Sum_probs=50.6
Q ss_pred chhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHHHHHHhcCCCCceEEccCCcccccc
Q psy3769 369 TVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEG-IPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVP 445 (974)
Q Consensus 369 sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G-~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~ 445 (974)
+..|+-...++|++|=+++++.+.+..++|.+.|+.. |.-+-| .+ ...++|.+.|+ ++|.++.=+-+.|.-.|
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~V-VtanK~~la-~~~~el~~la~--~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSV-VTSNKPPIA-FHYDELLDLAN--ERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcE-EECCHHHHH-hCHHHHHHHHH--HcCCeEEEeccccccCC
Confidence 5556643347999999999999999999999999773 444433 22 12357888899 88988875554443333
No 447
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=21.78 E-value=1.6e+02 Score=32.59 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=33.1
Q ss_pred ccchhhhcccCCCcEEEEEecchhHHHHHHHHHHc-CCc-EEEEEcCCCCh
Q psy3769 367 FDTVKNAKNETGATVSVIYVPAIFATSAIWEAIES-ELE-LVICITEGIPV 415 (974)
Q Consensus 367 y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~-gv~-~~vi~s~G~~e 415 (974)
..+.+++.+ +.|++++++|+..+.++++++... .-+ .++.++-|+..
T Consensus 59 ~~~~~~~~~--~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~ 107 (305)
T PRK12921 59 ITDPEELTG--PFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ 107 (305)
T ss_pred ecCHHHccC--CCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence 345555544 789999999999999999888763 222 34456778753
No 448
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=21.73 E-value=1.4e+02 Score=28.37 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=47.2
Q ss_pred ccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEec-c------hhHHHHHHHHHHcC
Q psy3769 330 TGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVP-A------IFATSAIWEAIESE 402 (974)
Q Consensus 330 ~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp-~------~~v~~~v~e~~~~g 402 (974)
.+.++++.+++.|++ ...||... +.+ ..+.+ ..|-+ ++.| . -.+..+++-|.+.|
T Consensus 13 ia~r~~ra~r~~Gi~----tv~v~s~~--d~~---s~~~~--------~ad~~-~~~~~~~~~~~yl~~e~I~~ia~~~g 74 (110)
T PF00289_consen 13 IAVRIIRALRELGIE----TVAVNSNP--DTV---STHVD--------MADEA-YFEPPGPSPESYLNIEAIIDIARKEG 74 (110)
T ss_dssp HHHHHHHHHHHTTSE----EEEEEEGG--GTT---GHHHH--------HSSEE-EEEESSSGGGTTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCc----ceeccCch--hcc---ccccc--------ccccc-eecCcchhhhhhccHHHHhhHhhhhc
Confidence 466778888888987 44454442 221 11111 12333 3333 1 23455666666667
Q ss_pred CcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccC
Q psy3769 403 LELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPN 438 (974)
Q Consensus 403 v~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPn 438 (974)
+-. ++---||-. +..++.+.+. ++|+.++||+
T Consensus 75 ~~~-i~pGyg~ls-e~~~fa~~~~--~~gi~fiGp~ 106 (110)
T PF00289_consen 75 ADA-IHPGYGFLS-ENAEFAEACE--DAGIIFIGPS 106 (110)
T ss_dssp ESE-EESTSSTTT-THHHHHHHHH--HTT-EESSS-
T ss_pred Ccc-cccccchhH-HHHHHHHHHH--HCCCEEECcC
Confidence 664 343334432 2345677888 8999999997
No 449
>KOG3505|consensus
Probab=21.52 E-value=1.1e+02 Score=25.00 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=34.7
Q ss_pred HHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccEEEEEEcc
Q psy3769 476 VVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDAVIMIGEI 525 (974)
Q Consensus 476 ~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~I~ly~E~ 525 (974)
++......|-||+++.|.-.-+ +-+.+..-||.++-=+++.|.
T Consensus 10 lirlvStAgtGf~~~~s~~k~~-------~klt~~kYDPvVkr~VLF~E~ 52 (55)
T KOG3505|consen 10 LIRLVSTAGTGFFYVKSRKKLA-------EKLTFRKYDPVVKRHVLFTEQ 52 (55)
T ss_pred HHHHHHhcccceEEEEeccccc-------ccceeeecCchheeeeeeehh
Confidence 3445668899999999876553 778888999999998999885
No 450
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=21.48 E-value=2.9e+02 Score=28.32 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-H----hhhhHHHHHHHHHHHHHHHhhhcccch
Q psy3769 712 LLVIIGILFSIPIIIFGSKLVLILI-E----KFSSIIILCSILLGYLSGNMIFSDQSL 764 (974)
Q Consensus 712 ~li~~g~~~~i~~l~~~~~~~~~~~-~----~~~~l~~~~~~~l~~ig~~l~~~~~~~ 764 (974)
+.+..|..++-.+...++.+....+ + -...++++++.+|.|+|.+++.+.+..
T Consensus 27 ~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~ 84 (191)
T PF01810_consen 27 LPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSS 84 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 4555555555555555444443333 3 345678899999999999999876544
No 451
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.47 E-value=3.3e+02 Score=26.18 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=51.9
Q ss_pred CEEEEeCChhhHHHHHHHHHH-cCCceEEEeecCCCCCCCCCHHHH-------------HHHhhhCCCccEEEEEEccCC
Q psy3769 462 RIGVVSRSGTLTYEVVCQLTE-LGFGQSSAVGIGGDPINGLKYIDI-------------LKLFNEDQNTDAVIMIGEIGG 527 (974)
Q Consensus 462 ~va~vSQSG~~~~~~~~~~~~-~g~g~s~~vs~Gn~a~~dv~~~d~-------------l~~l~~Dp~t~~I~ly~E~~g 527 (974)
+|+++.-||-|+..+...+.+ .++-+...+...+++..+-+..|+ ++-+.++ ..+++-|- .
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvIDfT-~-- 76 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVIDFT-N-- 76 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEEEES----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEEEcC-C--
Confidence 488999999999999988887 788888888888832233333322 2233333 34555554 1
Q ss_pred CchHHHHHHHHh--cCCCCEEEEecccC
Q psy3769 528 LDEIYAANWIKK--NMKKPVIGFIAGIT 553 (974)
Q Consensus 528 ~~~~~~~~f~~~--~~~KPVv~lk~Grs 553 (974)
+......++. +.++|+|+-.+|-+
T Consensus 77 --p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 77 --PDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp --HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred --hHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 1333344443 56899999666654
No 452
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=20.99 E-value=6.9e+02 Score=29.68 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=30.2
Q ss_pred HHHHHHHHHcC----CcEEEEEc------CCCC--hHHHHHHHHHHhcCCCCceEEccCC
Q psy3769 392 TSAIWEAIESE----LELVICIT------EGIP--VRDMLILKNKMKKNNSKTLLLGPNC 439 (974)
Q Consensus 392 ~~~v~e~~~~g----v~~~vi~s------~G~~--e~~~~~l~~~a~~~~~gi~viGPnc 439 (974)
++.+++++... ++. |+++ .|.+ .+..+++.++|+ ++|+.++-..|
T Consensus 138 ~e~Le~~I~~~~~~~~~~-I~v~~p~N~~gG~~~s~~~l~~i~eia~--~~gi~li~DaA 194 (431)
T cd00617 138 VAKLEKLIDEVGAENIPY-IVLTITNNTAGGQPVSMANLREVRELAH--KYGIPVVLDAA 194 (431)
T ss_pred HHHHHHHhCcccCCCccE-EEEECCcCCCCCccCCHHHHHHHHHHHH--HcCCEEEEEch
Confidence 56677776532 554 4442 3543 334568899999 99999987777
No 453
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.86 E-value=1.4e+03 Score=26.88 Aligned_cols=151 Identities=14% Similarity=0.103 Sum_probs=91.5
Q ss_pred EEEecchhHHHHHHHHHHc-CCcEEEEEcCCCChH---HHHHHHHHHhcCCC-----CceEEccCCccccccCc-cc---
Q psy3769 383 VIYVPAIFATSAIWEAIES-ELELVICITEGIPVR---DMLILKNKMKKNNS-----KTLLLGPNCPGLIVPEE-IK--- 449 (974)
Q Consensus 383 vi~vp~~~v~~~v~e~~~~-gv~~~vi~s~G~~e~---~~~~l~~~a~~~~~-----gi~viGPnc~G~~~~~~-~~--- 449 (974)
+|+=-.+...+.++++.++ ..+.+.++++..++. |...+.+.++ +. +++++.-+|.|+..... +.
T Consensus 61 ~VfGg~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~--~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a 138 (417)
T cd01966 61 TILGGGENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFR--AEHPELADVPVVYVSTPDFEGSLEDGWAAA 138 (417)
T ss_pred EEECCHHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHH--hhccccCCCeEEEecCCCCCCcHHHHHHHH
Confidence 3666888999999999864 788889999876643 4455555554 33 89999999999875321 11
Q ss_pred -cc----cCCCC---CCCCCCEEEEe---CChhhHHHHHHHHHHcCCceEEE-----------------eecCCCCCCCC
Q psy3769 450 -IG----IMPGN---IHKKGRIGVVS---RSGTLTYEVVCQLTELGFGQSSA-----------------VGIGGDPINGL 501 (974)
Q Consensus 450 -~~----~~~~~---~~~~G~va~vS---QSG~~~~~~~~~~~~~g~g~s~~-----------------vs~Gn~a~~dv 501 (974)
.+ +..+. ...++.|-++. .+.+=..++-..++..|+-...+ +.+|+ .
T Consensus 139 ~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~gg-----t 213 (417)
T cd01966 139 VEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGG-----T 213 (417)
T ss_pred HHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCCC-----C
Confidence 01 11211 24578899995 33333356667776666665332 22333 3
Q ss_pred CHHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHhcCCCCEEEE
Q psy3769 502 KYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGF 548 (974)
Q Consensus 502 ~~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~~~~KPVv~l 548 (974)
++.|+- +=++-++-++..+.. ....++++..-+.|-+.+
T Consensus 214 ~leei~----~~~~A~lniv~~~~~----~~~a~~Lee~~GiP~~~~ 252 (417)
T cd01966 214 TLEDIR----QMGRSAATLAIGESM----RKAAEALEERTGVPYYVF 252 (417)
T ss_pred cHHHHH----hhccCeEEEEECHHH----HHHHHHHHHHHCCCeeec
Confidence 455544 344555555544433 455666666667887764
No 454
>KOG0135|consensus
Probab=20.81 E-value=1.6e+02 Score=35.54 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=57.5
Q ss_pred HHHHhhhcccchhhHhhh------ccccceeEEEEEeEEEEEEEecccCCCCCcceeeceeecCCCcCcccceEe---eH
Q psy3769 753 LSGNMIFSDQSLTQLQIN------KLLIKNIFIFNMELHISLPATDSRNSRDGRFIERIGFYNPLASKKEKKFKI---LL 823 (974)
Q Consensus 753 ig~~l~~~~~~~~~~~~~------~~~~k~~~~~~~~~~y~iv~~~~r~~rdg~~ie~~g~y~p~~~~~~~~~~~---~~ 823 (974)
+++||.++...+..-... +-|++.+.=|-+.=+|-+ .+-..-.+=|-|+..-+|||.++ +..+ |+
T Consensus 121 ls~K~~lh~~lfg~AV~~~GT~rH~~yi~~~~n~ev~gcfam--TEl~HGSNt~~I~TtatyDP~t~----EfVinTP~~ 194 (661)
T KOG0135|consen 121 LSAKLGLHFLLFGNAVKSMGTKRHHDYIQKTENYEVKGCFAM--TELGHGSNTKGIQTTATYDPTTE----EFVINTPDF 194 (661)
T ss_pred hhhhhhhhhhhhhHHHHhhccHHHHHHHhhhhcceeeeeEEE--eeecCCccccceeeeeeecCCCC----eeEecCCcH
Confidence 455555554443332221 335555555554444443 34445567788999999999886 3444 57
Q ss_pred HHHHHhHhcCcccCcc---hhhhhhhhhcccccccceeE
Q psy3769 824 NRFTYWKQVGAKTSLT---VDHLITIGVVLRAYGIFGWI 859 (974)
Q Consensus 824 ~~~~~wl~~ga~~s~t---v~~ll~ig~i~~~~Gl~Gev 859 (974)
+.++||+++-|.--.- -.+|. +. .+-||+.|.+
T Consensus 195 ~A~K~WiGn~a~~athavvfa~L~-~~--g~n~G~H~Fi 230 (661)
T KOG0135|consen 195 SAIKCWIGNAAKHATHAVVFAQLH-VP--GQNHGLHGFI 230 (661)
T ss_pred HHHHHHhccccccceEEEEEEEee-ec--CccCceeeEE
Confidence 9999999987765321 12222 11 5567777764
No 455
>PRK12435 ferrochelatase; Provisional
Probab=20.71 E-value=1.7e+02 Score=33.24 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHc-CCcEEEEEcCCCChHHH-------HHHHHHHhcCCCCceEEccCCcc
Q psy3769 390 FATSAIWEAIES-ELELVICITEGIPVRDM-------LILKNKMKKNNSKTLLLGPNCPG 441 (974)
Q Consensus 390 ~v~~~v~e~~~~-gv~~~vi~s~G~~e~~~-------~~l~~~a~~~~~gi~viGPnc~G 441 (974)
.+.+++++..+. |+|.++++.-||..+-. .|.++.|+ +.|+...=+.|++
T Consensus 233 ~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~--~~G~~~~r~~~lN 290 (311)
T PRK12435 233 DVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTD--EIGAKYYRPEMPN 290 (311)
T ss_pred CHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHH--HcCCcEEeccCCC
Confidence 456788888877 99999999999874321 34567888 8888877777763
No 456
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=20.69 E-value=9.1e+02 Score=24.61 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=91.8
Q ss_pred ccccchhhhccc--CCCcEEEEEecc--hhHHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCc
Q psy3769 365 PIFDTVKNAKNE--TGATVSVIYVPA--IFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCP 440 (974)
Q Consensus 365 ~~y~sl~dip~~--~~vDlavi~vp~--~~v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~ 440 (974)
..+..+.+.-.+ ..+++.+..... +...+.++++.+.++.+++.... ..... .+.+.++ +.++.++.+++.
T Consensus 17 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~--~~~~~-~~~~~~~--~~~ip~v~~~~~ 91 (269)
T cd01391 17 QLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPS--SSSAL-AVVELAA--AAGIPVVSLDAT 91 (269)
T ss_pred HHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCC--CHHHH-HHHHHHH--HcCCcEEEecCC
Confidence 333444444332 355555544433 25667788888888887544322 22222 1456677 788888877764
Q ss_pred cccc-cCccccccCCC------------CCCCCCCEEEEeCCh-hhH----HHHHHHHHHcCCceEEEeecCCCCCCCCC
Q psy3769 441 GLIV-PEEIKIGIMPG------------NIHKKGRIGVVSRSG-TLT----YEVVCQLTELGFGQSSAVGIGGDPINGLK 502 (974)
Q Consensus 441 G~~~-~~~~~~~~~~~------------~~~~~G~va~vSQSG-~~~----~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~ 502 (974)
.-.. .........+. .....++++++.... ... ..+.+..+++|.-+......... .+-+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 169 (269)
T cd01391 92 APDLTGYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLD--TEKG 169 (269)
T ss_pred CCccCCCceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCC--cccc
Confidence 2110 00111111110 012357899987766 332 22334444555444444443333 2357
Q ss_pred HHHHHHHhhhCCCccEEEEEEccCCCchHHHHHHHHh--cC---CCCEEEEecccC
Q psy3769 503 YIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKK--NM---KKPVIGFIAGIT 553 (974)
Q Consensus 503 ~~d~l~~l~~Dp~t~~I~ly~E~~g~~~~~~~~f~~~--~~---~KPVv~lk~Grs 553 (974)
...+.+.+.+.|+.++|++.... .+..++++ .. ++.+.++-.+.+
T Consensus 170 ~~~~~~~l~~~~~~~~i~~~~~~------~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 170 FQALLQLLKAAPKPDAIFACNDE------MAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred HHHHHHHHhcCCCCCEEEEcCch------HHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 78888888888888888887652 35566554 22 234555544443
No 457
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=20.61 E-value=1.3e+03 Score=26.74 Aligned_cols=230 Identities=16% Similarity=0.222 Sum_probs=129.5
Q ss_pred hhHHHHHHHhcCCCCceeeecCCCCCHHHHHHHHHHHhhcCCeEEEEEccccccCcc----cccchhhhhccCCC-CceE
Q psy3769 274 AMATMDTIKLFGGEPANFLDIGGGATIKTITEAFKIMMQQNNLKTILVNIFGITGKT----GRFHTNLCLNYGNG-KKAF 348 (974)
Q Consensus 274 am~t~D~i~~~gg~panfld~GG~a~~~~v~~a~~~il~~~~~~~i~vni~G~~~k~----G~~v~~~l~~~g~~-g~~~ 348 (974)
+....+.|+..-++|-+++++=|+=|..=++..++-+|. ++++-| .| |+++ -..-++.+++.-.+ + .
T Consensus 13 ~~~l~~~i~~~~~r~~~iMeVCGtHt~aI~r~Gir~lLP-~~ieli----sG-PGCPVCVtp~~~ID~ai~La~~~~--v 84 (364)
T PRK15062 13 ARALLEEIRKLATRPLRIMEVCGGHTHAIFRYGLRSLLP-ENIELI----HG-PGCPVCVTPMGRIDAAIELASRPG--V 84 (364)
T ss_pred HHHHHHHHHHhcCCCceEEEeCCCchHHHHHhChHhhCC-CCcEEe----cC-CCCCcEeCcHHHHHHHHHHhCCCC--e
Confidence 445567777777899999999999999999999999885 666655 55 4441 11122333322222 2 3
Q ss_pred EEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchhHHHHHHHHHHcCCcEEEEEcCCCChHH--HHHHHHHHh
Q psy3769 349 VAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRD--MLILKNKMK 426 (974)
Q Consensus 349 V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e~~~~gv~~~vi~s~G~~e~~--~~~l~~~a~ 426 (974)
+...--.. -.+.|- ..||.++-. ..-|+=+++-|- |+++-|.+.--|.+|.++-||.-+. ....+..|+
T Consensus 85 i~~TfGDm--lRVPGs--~~SL~~ara-~GadVriVYSpl----dAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~ 155 (364)
T PRK15062 85 ILCTFGDM--LRVPGS--KGSLLEAKA-EGADVRIVYSPL----DALKIARENPDKEVVFFAIGFETTAPATAATLLQAK 155 (364)
T ss_pred EEEecccc--ccCCCC--cCCHHHHHh-CCCCEEEEeCHH----HHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHH
Confidence 33322222 234453 579999864 478999999884 6777787777788999999995332 122233344
Q ss_pred cCCCCceEEccCCccccccCccc------cccCCC----CCCCCCCEEEEeCChhhHHHHHHHHHHcCCceEEEeecCCC
Q psy3769 427 KNNSKTLLLGPNCPGLIVPEEIK------IGIMPG----NIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGD 496 (974)
Q Consensus 427 ~~~~gi~viGPnc~G~~~~~~~~------~~~~~~----~~~~~G~va~vSQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~ 496 (974)
+.++ +=+-++..+... ....+. ....||+|+.|+-+...- -+ +++.++. .+| +|-+
T Consensus 156 --~~~~-----~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVstI~G~~~y~--~l--~~~y~~P--~VV-aGFE 221 (364)
T PRK15062 156 --AEGL-----KNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHVSTIIGTEPYE--FL--AEEYGIP--VVV-AGFE 221 (364)
T ss_pred --HcCC-----CCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEeEEEeccchhH--HH--HHHcCCC--eEE-eccC
Confidence 3332 222222222111 000010 124679999998665543 22 2344543 343 5776
Q ss_pred CCCCCCHHHHHHHhh---hCCCccEEEEEEccC---CCchHHHHHHHHh
Q psy3769 497 PINGLKYIDILKLFN---EDQNTDAVIMIGEIG---GLDEIYAANWIKK 539 (974)
Q Consensus 497 a~~dv~~~d~l~~l~---~Dp~t~~I~ly~E~~---g~~~~~~~~f~~~ 539 (974)
+ +|+-.-+..+. ++-+.++.-.|-..+ || ..+++.+..
T Consensus 222 p---~DiL~ai~~lv~q~~~g~~~v~N~Y~r~V~~eGN--~~A~~~i~~ 265 (364)
T PRK15062 222 P---LDILQSILMLVRQLEEGRAEVENQYTRVVKEEGN--LKAQELIAE 265 (364)
T ss_pred H---HHHHHHHHHHHHHHHCCCceEEEccceeeCcccC--HHHHHHHHH
Confidence 3 33333332222 356667777775443 33 456666665
No 458
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=20.55 E-value=1.5e+02 Score=28.54 Aligned_cols=34 Identities=26% Similarity=0.607 Sum_probs=30.7
Q ss_pred ceeeecCCCCCHHHHHHHHHHHhhcCCeEEEEEc
Q psy3769 289 ANFLDIGGGATIKTITEAFKIMMQQNNLKTILVN 322 (974)
Q Consensus 289 anfld~GG~a~~~~v~~a~~~il~~~~~~~i~vn 322 (974)
.||+-+....+.+++.++++.++.++++-.|+|+
T Consensus 34 ~nf~~v~~~t~~eei~~~~~~~l~~~digIIlIt 67 (115)
T TIGR01101 34 PNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILIN 67 (115)
T ss_pred cceeeecCCCCHHHHHHHHHHHhhcCCeEEEEEc
Confidence 6899999999999999999999999998888764
No 459
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=20.54 E-value=5e+02 Score=29.84 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=61.5
Q ss_pred cccchhhhcccCCCcEEEEEecch---hHHHHHHHHHHcCCcEEEEEcC-CCChHHHHHHHHHHhcCCCCceEEccCCcc
Q psy3769 366 IFDTVKNAKNETGATVSVIYVPAI---FATSAIWEAIESELELVICITE-GIPVRDMLILKNKMKKNNSKTLLLGPNCPG 441 (974)
Q Consensus 366 ~y~sl~dip~~~~vDlavi~vp~~---~v~~~v~e~~~~gv~~~vi~s~-G~~e~~~~~l~~~a~~~~~gi~viGPnc~G 441 (974)
+|++............+.+-+.++ .-++.+++++..+.|.+++... |.. .+..++.+.|+ ++|+.++=.+|-+
T Consensus 80 t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~~~G~~-~~~~~i~~la~--~~~i~vIeD~a~a 156 (375)
T PRK11706 80 TFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPVHYAGVA-CEMDTIMALAK--KHNLFVVEDAAQG 156 (375)
T ss_pred CcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEeCCCCCc-cCHHHHHHHHH--HcCCEEEEECccc
Confidence 444444433222344444433333 2256788887777887554332 432 34578899999 9999999998876
Q ss_pred ccccCcc--c-----cccC---CCCCCCCC-CEEEEeCChhhHHHHH
Q psy3769 442 LIVPEEI--K-----IGIM---PGNIHKKG-RIGVVSRSGTLTYEVV 477 (974)
Q Consensus 442 ~~~~~~~--~-----~~~~---~~~~~~~G-~va~vSQSG~~~~~~~ 477 (974)
+.....+ . .+.+ +.+...+| +.++++.+..+...+.
T Consensus 157 ~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~ 203 (375)
T PRK11706 157 VMSTYKGRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAE 203 (375)
T ss_pred cccccCCeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHH
Confidence 6543211 0 1111 22334444 5778888877765443
No 460
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.43 E-value=5.3e+02 Score=28.47 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHhcCCCCceE
Q psy3769 391 ATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKTLL 434 (974)
Q Consensus 391 v~~~v~e~~~~gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~v 434 (974)
...-+++|.+.|+.++++ ...+-++..++.+.|+ ++|+.+
T Consensus 104 ~e~F~~~~~~aGvdGlIi--pDLP~ee~~~~~~~~~--~~gl~~ 143 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLII--PDLPPEESEELREAAK--KHGLDL 143 (259)
T ss_dssp HHHHHHHHHHHTEEEEEE--TTSBGGGHHHHHHHHH--HTT-EE
T ss_pred hHHHHHHHHHcCCCEEEE--cCCChHHHHHHHHHHH--HcCCeE
Confidence 455777777778777544 3344444456677777 777653
No 461
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=20.23 E-value=5.2e+02 Score=31.48 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHc-CCcEEEEEcCCCChHHHHHHHHHHhcCCCCceEEccCCccccccC-ccc-------c-ccCC---
Q psy3769 388 AIFATSAIWEAIES-ELELVICITEGIPVRDMLILKNKMKKNNSKTLLLGPNCPGLIVPE-EIK-------I-GIMP--- 454 (974)
Q Consensus 388 ~~~v~~~v~e~~~~-gv~~~vi~s~G~~e~~~~~l~~~a~~~~~gi~viGPnc~G~~~~~-~~~-------~-~~~~--- 454 (974)
.+.+.++++++.++ ..+.++++++..++.-...+...+++.+.+++++.=+|.|+-... .+. . .+..
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC~seiIGdDi~~v~~~~~~~~~Vi~v~t~gf~~~~~~G~~~al~~lv~~~~~~~~ 149 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSCTAELLQEDLGGLAKHAGLPIPVLPLELNAYRVKENWAADETFYQLVRALAKKAA 149 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcHHHHhccCHHHHHHHhCCCCCEEEEecCCcccccchHHHHHHHHHHHHHhhhcc
Confidence 35677777777654 566667777665543221122222211345677776666665432 111 0 0111
Q ss_pred ---CCCCCCCCEEEEeC------ChhhHHHHHHHHHHcCCceEEEeecCCCCCCCCCHHHHHHHhhhCCCccE-EEEEEc
Q psy3769 455 ---GNIHKKGRIGVVSR------SGTLTYEVVCQLTELGFGQSSAVGIGGDPINGLKYIDILKLFNEDQNTDA-VIMIGE 524 (974)
Q Consensus 455 ---~~~~~~G~va~vSQ------SG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~~dv~~~d~l~~l~~Dp~t~~-I~ly~E 524 (974)
.....++.|-++.- +.+=..++-..++.-|+....+.+.|. ++.|+-+. |+-.+ |++|-|
T Consensus 150 ~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~------s~~di~~l----~~A~~nivl~~~ 219 (519)
T PRK02910 150 ELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGA------SPADLKRL----PAAWFNVVLYRE 219 (519)
T ss_pred cccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCC------CHHHHHhc----ccCcEEEEeCHH
Confidence 11223456777743 233345677777777888877776433 35555443 23222 555777
Q ss_pred cCCCchHHHHHHHHhcCCCCEEE
Q psy3769 525 IGGLDEIYAANWIKKNMKKPVIG 547 (974)
Q Consensus 525 ~~g~~~~~~~~f~~~~~~KPVv~ 547 (974)
.. ...+++++..-+.|.+.
T Consensus 220 ~g----~~~A~~Lee~fGiP~i~ 238 (519)
T PRK02910 220 IG----ESAARYLEREFGQPYVK 238 (519)
T ss_pred HH----HHHHHHHHHHhCCcccc
Confidence 54 56778887767889864
No 462
>PRK06756 flavodoxin; Provisional
Probab=20.01 E-value=4e+02 Score=26.10 Aligned_cols=97 Identities=7% Similarity=-0.055 Sum_probs=52.3
Q ss_pred ccccccCcccccchhhhhccCCCCceEEEEecCCCCCccccccccccchhhhcccCCCcEEEEEecchh---HHHHHHHH
Q psy3769 322 NIFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKNAKNETGATVSVIYVPAIF---ATSAIWEA 398 (974)
Q Consensus 322 ni~G~~~k~G~~v~~~l~~~g~~g~~~V~pVnP~~~g~~i~G~~~y~sl~dip~~~~vDlavi~vp~~~---v~~~v~e~ 398 (974)
.-.|.|.+....+.+.+.+.|..- .++.++.. +...++. .-|.+++..|... .++.+.+.
T Consensus 10 S~tGnTe~vA~~ia~~l~~~g~~v--~~~~~~~~------------~~~~~~~---~~d~vi~gspt~~~g~~p~~~~~f 72 (148)
T PRK06756 10 SMSGNTEEMADHIAGVIRETENEI--EVIDIMDS------------PEASILE---QYDGIILGAYTWGDGDLPDDFLDF 72 (148)
T ss_pred CCCchHHHHHHHHHHHHhhcCCeE--EEeehhcc------------CCHHHHh---cCCeEEEEeCCCCCCCCcHHHHHH
Confidence 344556566666666665555542 22333211 1234443 4688888877642 44434444
Q ss_pred HH-------cCCcEEEEEcCCCC-----hHHHHHHHHHHhcCCCCceEEccC
Q psy3769 399 IE-------SELELVICITEGIP-----VRDMLILKNKMKKNNSKTLLLGPN 438 (974)
Q Consensus 399 ~~-------~gv~~~vi~s~G~~-----e~~~~~l~~~a~~~~~gi~viGPn 438 (974)
++ +|.+ +.++.+|-. .....++.+..+ +.|.++++|.
T Consensus 73 l~~l~~~~l~~k~-~~~fgt~~~~y~~~~~a~~~l~~~l~--~~g~~~v~~~ 121 (148)
T PRK06756 73 YDAMDSIDLTGKK-AAVFGSCDSAYPKYGVAVDILIEKLQ--ERGAAVVLEG 121 (148)
T ss_pred HHHHhcCCCCCCE-EEEEeCCCCchHHHHHHHHHHHHHHH--HCCCEEcCCC
Confidence 32 2444 455554321 223456777888 8899999873
Done!