RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3769
(974 letters)
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 193 bits (491), Expect = 1e-56
Identities = 87/233 (37%), Positives = 137/233 (58%)
Query: 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGI 60
MN++EYQ K++ ++ + P G C EA +AA KIG WV+K Q+HAGGRGK GG+
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60
Query: 61 KLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQN 120
K+ S E + + + LG +L+T QT+ G+ V +L+E DI KELY+ + DR +
Sbjct: 61 KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRR 120
Query: 121 IIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNISKKISIPKNSLINFYEE 180
++FM S +GG++IE +++ +P L++K +DPL G ++ K+ + + F +
Sbjct: 121 VVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKI 180
Query: 181 IQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQ 233
+ + E D L+EINPLVI + +I LD K D NALFR P++ +
Sbjct: 181 FMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMR 233
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 171 bits (433), Expect = 9e-49
Identities = 72/240 (30%), Positives = 132/240 (55%), Gaps = 7/240 (2%)
Query: 1 MNIYEYQGKEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGG- 59
+N+ EYQ K+++ V + + + +EA++AAK++ V+KAQI AGGRGK
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 61
Query: 60 ------IKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFM 113
+ L + E V + K+++G L T QT +EG V V++ E +DI +E Y++ +
Sbjct: 62 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 121
Query: 114 TDRVQQNIIFMGSNKGGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNISKKISIPKNS 173
DR + +GS +GG+DIE ++ ++PEL++K ID + G+ + +++ +
Sbjct: 122 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 181
Query: 174 LINFYEEIQNIYKSYWETDSLLLEINPLVINSKNKIISLDIKFNFDTNALFRHPEIISYQ 233
++I+ +Y + + D+ +E+NP + +++ D K NFD NA FR +I +
Sbjct: 182 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 241
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 130
Score = 128 bits (324), Expect = 2e-35
Identities = 59/130 (45%), Positives = 81/130 (62%), Gaps = 10/130 (7%)
Query: 314 NNLKTILVN------IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIF 367
+ K + V+ G TGK G FH+ L YG V G P K G+ +P+F
Sbjct: 5 ASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTN---LVGGTTPGKGGKTHLGLPVF 61
Query: 368 DTVKNAKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKK 427
+TVK AK +TGAT SVIYVP FA +AI EAI++E+ LV+CITEGIP +DM+ +K+++ +
Sbjct: 62 NTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLR 121
Query: 428 NNSKTLLLGP 437
KT L+GP
Sbjct: 122 -QGKTRLIGP 130
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Thermus thermophilus
[TaxId: 274]}
Length = 121
Score = 121 bits (304), Expect = 7e-33
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 9/119 (7%)
Query: 319 ILVN------IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKN 372
ILVN + GITG+ G+FHT L YG VAGV P K G + +P++DTVK
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGT---KIVAGVTPGKGGMEVLGVPVYDTVKE 58
Query: 373 AKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSK 431
A S+I+VPA A A EA + + L++ ITEGIP DM+ ++K S+
Sbjct: 59 AVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR 117
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 119
Score = 120 bits (302), Expect = 1e-32
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 11/124 (8%)
Query: 319 ILVN------IFGITGKTGRFHTNLCLNYGNGKKAFVAGVNPKKNGQKFEEIPIFDTVKN 372
IL++ G TG G FH+ + YG V GV P K G +P+F+TV+
Sbjct: 1 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTK---MVGGVTPGKGGTTHLGLPVFNTVRE 57
Query: 373 AKNETGATVSVIYVPAIFATSAIWEAIESELELVICITEGIPVRDMLILKNKMKKNNSKT 432
A TGAT SVIYVPA F +I EAI++ ++L+I ITEGIP DML +K K+ + +
Sbjct: 58 AVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDE--AGV 115
Query: 433 LLLG 436
++G
Sbjct: 116 RMIG 119
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 166
Score = 110 bits (275), Expect = 2e-28
Identities = 84/131 (64%), Positives = 106/131 (80%)
Query: 438 NCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDP 497
N PG+I P E KIGI PG+IHK G++G+VSRSGTLTYE V Q T+ GFGQS+ VGIGGDP
Sbjct: 1 NSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDP 60
Query: 498 INGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPG 557
I G +IDIL++F +D T+A++MIGEIGG E AA +IK+++ KPV+G+IAG+TAP G
Sbjct: 61 IPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKG 120
Query: 558 KRMGHAGALIT 568
KRMGHAGA+I
Sbjct: 121 KRMGHAGAIIA 131
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 167
Score = 109 bits (272), Expect = 5e-28
Identities = 81/130 (62%), Positives = 103/130 (79%)
Query: 438 NCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDP 497
NCPG+I EE KIGIMPG++ K+GR+G++SRSGTLTYE L++ G G ++ VGIGGDP
Sbjct: 1 NCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDP 60
Query: 498 INGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPG 557
+ G + D+L LFNED T+AV++IGEIGG DE AA W+K +MKKPV+GFI G +AP G
Sbjct: 61 VIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRSAPKG 120
Query: 558 KRMGHAGALI 567
KRMGHAGA+I
Sbjct: 121 KRMGHAGAII 130
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 102 bits (255), Expect = 6e-26
Identities = 47/84 (55%), Positives = 60/84 (71%)
Query: 244 DLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTI 303
+ +E EA+K+DL YI L+GNI C VNGAGLAMAT D I L GG+PANFLD+GGG +
Sbjct: 1 EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQV 60
Query: 304 TEAFKIMMQQNNLKTILVNIFGIT 327
+AFK++ ++ ILVNIFG
Sbjct: 61 YQAFKLLTADPKVEAILVNIFGGI 84
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 176
Score = 102 bits (256), Expect = 7e-26
Identities = 84/134 (62%), Positives = 103/134 (76%), Gaps = 4/134 (2%)
Query: 438 NCPGLIVPEEIKIGIMPGNIHKKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDP 497
NCPG+I P E KIGIMPG+IHKKGRIG+VSRSGTLTYE V Q T++G GQS VGIGGDP
Sbjct: 1 NCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDP 60
Query: 498 INGLKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNM----KKPVIGFIAGIT 553
NG + D L++F D T+ +I+IGEIGG E AA ++K++ KPV+ FIAG+T
Sbjct: 61 FNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLT 120
Query: 554 APPGKRMGHAGALI 567
APPG+RMGHAGA+I
Sbjct: 121 APPGRRMGHAGAII 134
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 98.0 bits (244), Expect = 2e-24
Identities = 51/84 (60%), Positives = 68/84 (80%)
Query: 244 DLMEIEASKFDLTYIPLNGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDIGGGATIKTI 303
D E +A++++L Y+ L+GNIGC+VNGAGLAM TMD +KL GGEPANFLD+GGGAT + +
Sbjct: 1 DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERV 60
Query: 304 TEAFKIMMQQNNLKTILVNIFGIT 327
TEAFKI++ + +K +LVNIFG
Sbjct: 61 TEAFKIILSDDKVKAVLVNIFGGI 84
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 161
Score = 87.0 bits (215), Expect = 2e-20
Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 11/129 (8%)
Query: 450 IGIMPGNIH---------KKGRIGVVSRSGTLTYEVVCQLTELGFGQSSAVGIGGDPING 500
+GIM ++ KKG + +S+SG L +V + + G S + +G
Sbjct: 1 VGIMNTHVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVD 60
Query: 501 LKYIDILKLFNEDQNTDAVIMIGEIGGLDEIYAANWIKKNMKKPVIGFIAGITAPPGKRM 560
++++ + + A+ + E + + + KKP+I AG + +
Sbjct: 61 F--AELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIALKAGKSESGARAA 118
Query: 561 GHAGALITE 569
+
Sbjct: 119 SSHTGSLAG 127
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 69.7 bits (171), Expect = 2e-15
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 790 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
DSRN+R+GRFIER+GF+NP+AS+KE+ ++ L+R +W GA S V LI
Sbjct: 21 VADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALI 75
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus
thermophilus [TaxId: 274]}
Length = 83
Score = 62.4 bits (152), Expect = 9e-13
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 790 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
TD+R RDG++IE+IG+Y+P K+ + R YW VGA+ + T L+
Sbjct: 21 VTDARRKRDGKYIEKIGYYDPR-KTTPDWLKVDVERARYWLSVGAQPTDTARRLL 74
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 61.0 bits (148), Expect = 4e-12
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 790 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 844
D+++ R+G++I+ +G Y+P K++ + + W G + S ++
Sbjct: 21 VMDAKSPREGKYIDILGTYDP---KRKVLINVYPEKVKEWVLKGVELSHRAKAIL 72
>d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM,
N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 89
Score = 60.3 bits (146), Expect = 7e-12
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 843 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYV 902
L+ IG ++ YGI G + + F D + R+ ++ +++ + HG +
Sbjct: 2 LVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIR--QAELVRGRLHGKVL 59
Query: 903 LANLYGITDRNLATKLQGYYLKISINDFP 931
A L G+ DR A GY + I ++ P
Sbjct: 60 AAKLKGLDDREEARTFTGYEICIPRSELP 88
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 163
Score = 52.4 bits (125), Expect = 2e-08
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 34/148 (22%)
Query: 259 PLNGNIGCLVNGAGLAMATMDTIKLFGGEPA---------------------NFLDIGGG 297
P + + N G + T D + G + A N +D+
Sbjct: 1 PRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIAS 60
Query: 298 ATIKTITEAFKIMMQQNNLKTILVNIFGITGKTGRFHTNLCLNYGNGKKA---------- 347
A + K+++Q N+ ++ + G T K
Sbjct: 61 ARGEDYYRTAKLLLQDPNVDMLIAICV-VPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAM 119
Query: 348 FVAGVNPKKNGQKFEE--IPIFDTVKNA 373
F+AG +K + E+ IP ++ ++
Sbjct: 120 FMAGYVSEKAKELLEKNGIPTYERPEDV 147
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 46.1 bits (109), Expect = 9e-06
Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 24/150 (16%)
Query: 9 KEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQ 68
++K + + + ++EA+ A + G +I+ GG G +A + E+
Sbjct: 6 DVAMKKIGLETARSGIAHTMEEALAVAADV-GFPCIIRPSFTMGGS----GGGIAYNREE 60
Query: 69 VEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIF----- 123
E+ + + +LI+E + KE + + D+ II
Sbjct: 61 FEEICARG-----------LDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIEN 109
Query: 124 ---MGSNKGGMDIEIISKNSPELLYKTIID 150
MG + G ++ + Y+ + +
Sbjct: 110 FDAMGIHTGDSITVAPAQTLTDKEYQIMRN 139
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 38.9 bits (90), Expect = 0.002
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 9 KEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRG-----------KC 57
+ + + + P ++ A++ AK+IG V++A GGR +
Sbjct: 3 QHAVERLKLKQPANATVTAIEMAVEKAKEIGY-PLVVRASYVLGGRAMEIVYDEADLRRY 61
Query: 58 GGIKLAQSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYID 103
++ S + + + +GE V I E+I+
Sbjct: 62 FQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIE 107
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 35.4 bits (82), Expect = 0.003
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 939 FYWFNLIDCIVENIHGKLLGTVTEIIQN 966
+YW L V + +LLG + +++
Sbjct: 1 YYWHQLEGLKVIDQGRQLLGVIDHLLET 28
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide
synthetase (GAR-syn), domain 2 {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 36.4 bits (83), Expect = 0.010
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 9 KEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQ 68
K+ L + + + V+ A+ ++ G VIKA A G+G + L ++
Sbjct: 6 KDFLARHKIPTAEYQNFTEVEPALAYLREKGAP-IVIKADGLAAGKGVIVAMTLEEAEAA 64
Query: 69 VEKY 72
V
Sbjct: 65 VHDM 68
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 35.7 bits (81), Expect = 0.013
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 9 KEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRG 55
L K + PK L + +EA++ + G V+K I + GR
Sbjct: 5 SVALAKAGLPQPKTALATDREEALRLMEAFGY-PVVLKPVIGSWGRL 50
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
Length = 220
Score = 33.9 bits (76), Expect = 0.056
Identities = 26/192 (13%), Positives = 52/192 (27%), Gaps = 14/192 (7%)
Query: 9 KEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSLEQ 68
K ++K+ + + + +E + KK +VIKA G + L E
Sbjct: 6 KRFMKKYGIRTARFEVAETPEELREKIKKFSPP-YVIKADGL---ARGKGVLILDSKEET 61
Query: 69 VEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIFMGSNK 128
+EK +K I+G + + + + + + + G
Sbjct: 62 IEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRG 121
Query: 129 GGMDIEIISKNSPELLYKTIIDPLIGLTKNNIDNISKKISIPKNSLINFYEEIQNIYKSY 188
+ T I+ + K Y +
Sbjct: 122 PNTGGM----------GSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLML 171
Query: 189 WETDSLLLEINP 200
+ D +LE N
Sbjct: 172 HDGDPYILEYNV 183
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 32.4 bits (72), Expect = 0.16
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 9 KEILRKFNVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHA 51
K++ K ++ L E ++G + V +
Sbjct: 6 KQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGY 48
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
transformylase PurT, domain 2 {Escherichia coli [TaxId:
562]}
Length = 206
Score = 31.2 bits (69), Expect = 0.46
Identities = 15/136 (11%), Positives = 37/136 (27%), Gaps = 7/136 (5%)
Query: 9 KEILRKF-----NVTIPKGILCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLA 63
+E +R+ + + +A IG I + + I+ A
Sbjct: 2 REGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYP--CIVKPVMSSSGKGQTFIRSA 59
Query: 64 QSLEQVEKYTKKILGMQLITSQTNQEGENVFCVLIEEYIDIKKELYISFMTDRVQQNIIF 123
+ L Q KY ++ + F + + + + + + R +
Sbjct: 60 EQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYR 119
Query: 124 MGSNKGGMDIEIISKN 139
M + +
Sbjct: 120 ESWQPQQMSPLALERA 135
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2
{Aquifex aeolicus [TaxId: 63363]}
Length = 214
Score = 30.6 bits (68), Expect = 0.72
Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 21/122 (17%)
Query: 9 KEILRKFNVTIPKGI--LCMNVDEAIKAAKKIGGNSWVIKAQIHAGGRGKCGGIKLAQSL 66
KE+++K V + G + +++EA A++IG + G +
Sbjct: 5 KEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRI--------- 55
Query: 67 EQVEKYTKKILGMQLITSQTNQEGENVF---CVLIEEYIDIKKELYISFMTDRVQQNIIF 123
+ + Q ++E E F +L+E++I+ K + + D+ N+I
Sbjct: 56 ------CRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDK-HGNVIH 108
Query: 124 MG 125
+G
Sbjct: 109 LG 110
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313,
C-terminal domain {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 132
Score = 27.4 bits (61), Expect = 4.4
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 148 IIDPLIGLTKNNIDNISKKI 167
+ PLI L + I ++ +++
Sbjct: 111 VYYPLIALPEEYIKSVKERL 130
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId:
1245]}
Length = 228
Score = 27.7 bits (60), Expect = 6.2
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 9 KEILRKFNVTIPKGILCMNVDEAIKAAKKIG---GNSWVIKAQIHAGGR 54
KE+L + K I+ + KI GN +KA
Sbjct: 6 KELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSV 54
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 216
Score = 27.5 bits (60), Expect = 6.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 9 KEILRKFNV-TIP--KGILCMNVDEAIKAAKKIG 39
++K V +P G L ++D+ AK+IG
Sbjct: 6 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG 39
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 27.5 bits (60), Expect = 7.1
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 682 TIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSK--LVLILIEKF 739
T+ ++ D++L IA A Q++ ++ + G L + S IL E
Sbjct: 155 TVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPH 214
Query: 740 SSIIILCSILLGYLSGNMIFSDQSLTQLQINKLLIKN 776
+S+ L+ N+ F+ ++ ++ +
Sbjct: 215 ASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 251
>d1hn0a4 b.30.5.2 (A:619-899) Chondroitin ABC lyase I {Proteus
vulgaris [TaxId: 585]}
Length = 281
Score = 27.2 bits (60), Expect = 8.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 853 YGIFGWILIKLFLDDK-NIFFYARKIWFFDPNSL 885
YG+ + LI ++ + F A+K N L
Sbjct: 114 YGMMAFNLIYPANLERFDPNFTAKKSVLAADNHL 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.409
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,720,059
Number of extensions: 187409
Number of successful extensions: 546
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 38
Length of query: 974
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 880
Effective length of database: 1,116,976
Effective search space: 982938880
Effective search space used: 982938880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)