Query psy3772
Match_columns 119
No_of_seqs 139 out of 1052
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:55:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_P 50S ribosomal protein L 100.0 9.2E-57 3.2E-61 323.2 10.5 112 2-116 2-113 (114)
2 2zjr_M 50S ribosomal protein L 100.0 9E-56 3.1E-60 334.7 8.0 117 1-117 5-122 (166)
3 3v2d_T 50S ribosomal protein L 100.0 1.7E-54 5.8E-59 322.1 9.8 112 2-116 5-118 (146)
4 2ftc_K 39S ribosomal protein L 100.0 1.2E-47 4.1E-52 269.7 12.0 94 19-113 1-94 (98)
5 3bbo_R Ribosomal protein L19; 100.0 9E-45 3.1E-49 285.6 -6.3 103 5-111 129-231 (233)
6 2vc8_A Enhancer of mRNA-decapp 82.1 2.5 8.5E-05 28.4 4.8 58 23-91 7-69 (84)
7 3p8d_A Medulloblastoma antigen 81.8 6.7 0.00023 25.0 6.6 46 19-77 4-49 (67)
8 4he6_A Peptidase family U32; u 72.6 4.5 0.00016 26.0 3.9 36 40-75 3-39 (89)
9 2e6z_A Transcription elongatio 72.5 2.6 8.7E-05 25.8 2.5 29 19-54 5-33 (59)
10 4a53_A EDC3; RNA binding prote 69.3 11 0.00039 26.9 5.6 52 24-91 11-64 (125)
11 2eif_A IF-5A, protein (eukaryo 66.1 5.4 0.00018 28.2 3.4 50 18-79 12-67 (136)
12 4fm4_B NitrIle hydratase beta 65.2 3.3 0.00011 31.6 2.3 35 20-55 117-155 (206)
13 3qii_A PHD finger protein 20; 64.9 22 0.00076 23.6 6.1 47 18-77 18-64 (85)
14 2rm4_A CG6311-PB, DM EDC3; enh 63.8 12 0.00042 25.8 4.7 58 23-92 10-73 (103)
15 1nz9_A Transcription antitermi 62.3 16 0.00054 21.6 4.6 29 20-55 3-31 (58)
16 1jb7_A Telomere-binding protei 61.4 4.4 0.00015 34.4 2.6 40 17-63 108-148 (495)
17 3m4w_A Sigma-E factor regulato 60.3 25 0.00084 27.7 6.6 51 39-93 14-65 (295)
18 1bkb_A Translation initiation 53.5 18 0.00063 25.3 4.4 61 19-87 11-77 (136)
19 3p8b_B Transcription antitermi 53.3 19 0.00066 25.1 4.5 47 19-74 89-137 (152)
20 2eqj_A Metal-response element- 51.5 44 0.0015 21.3 6.0 39 17-64 9-47 (66)
21 4b3f_X DNA-binding protein smu 50.4 39 0.0013 28.5 6.7 34 18-55 75-110 (646)
22 2ldm_A Uncharacterized protein 55.1 3.5 0.00012 27.3 0.0 71 21-104 6-78 (81)
23 3d6x_A (3R)-hydroxymyristoyl-[ 49.4 19 0.00064 24.2 3.8 28 22-50 101-128 (146)
24 1iz6_A Initiation factor 5A; S 48.8 13 0.00044 26.3 2.9 53 19-79 9-63 (138)
25 3cnr_A Type IV fimbriae assemb 48.3 43 0.0015 22.9 5.5 46 21-73 41-86 (117)
26 4h4g_A (3R)-hydroxymyristoyl-[ 46.4 22 0.00076 25.2 3.9 28 21-49 110-137 (160)
27 2gll_A FABZ, (3R)-hydroxymyris 46.2 24 0.00084 25.0 4.1 29 21-50 124-152 (171)
28 2kbn_A Conserved protein; nucl 45.8 21 0.00071 23.8 3.5 19 18-36 57-76 (109)
29 1ugp_B NitrIle hydratase beta 45.0 10 0.00034 29.3 2.0 35 19-54 136-174 (226)
30 1yby_A Translation elongation 44.5 39 0.0013 25.7 5.2 63 18-88 33-100 (215)
31 1y96_A Gemin6, SIP2, GEM-assoc 43.7 68 0.0023 21.2 7.8 60 24-93 16-75 (86)
32 3qyh_B CO-type nitrIle hydrata 42.2 12 0.00041 28.7 2.0 36 18-54 127-166 (219)
33 1qzg_A Protection of telomeres 41.3 24 0.00081 26.5 3.5 33 17-56 95-128 (187)
34 3hht_B NitrIle hydratase beta 40.4 13 0.00044 28.8 2.0 36 18-54 138-177 (229)
35 2zzd_A Thiocyanate hydrolase s 39.9 14 0.00047 26.4 1.9 36 18-54 33-72 (126)
36 2k52_A Uncharacterized protein 39.8 26 0.00089 21.7 3.0 21 21-41 45-65 (80)
37 1zq1_A Glutamyl-tRNA(Gln) amid 39.6 59 0.002 27.1 6.0 65 21-96 11-77 (438)
38 3cpf_A Eukaryotic translation 39.3 46 0.0016 23.3 4.6 50 21-78 11-62 (138)
39 2zou_A Spondin-1; beta-sandwic 39.2 30 0.001 24.4 3.6 30 21-55 34-63 (149)
40 2jvv_A Transcription antitermi 39.2 43 0.0015 23.8 4.5 28 21-55 127-154 (181)
41 2qcp_X Cation efflux system pr 39.0 32 0.0011 22.0 3.4 20 18-37 50-69 (80)
42 3dm3_A Replication factor A; p 37.9 43 0.0015 22.2 4.1 27 21-47 66-92 (105)
43 1tg0_A BBC1 protein, myosin ta 37.1 47 0.0016 19.5 3.8 24 21-50 25-48 (68)
44 1u1z_A (3R)-hydroxymyristoyl-[ 36.7 88 0.003 21.8 5.8 27 22-49 121-147 (168)
45 3cdd_A Prophage MUSO2, 43 kDa 36.6 49 0.0017 25.7 4.8 36 21-63 56-91 (361)
46 3er0_A Eukaryotic translation 36.5 44 0.0015 24.5 4.2 51 20-78 34-86 (167)
47 2vb2_X Copper protein, cation 36.4 36 0.0012 22.1 3.4 20 18-37 58-77 (88)
48 3v2d_O 50S ribosomal protein L 36.4 63 0.0021 22.7 4.9 34 21-54 32-67 (122)
49 2bm3_A Type 2 cohesin, scaffol 36.3 67 0.0023 23.9 5.2 31 18-53 14-44 (166)
50 3h8z_A FragIle X mental retard 36.3 38 0.0013 23.9 3.7 33 20-54 59-91 (128)
51 4i83_A 3-hydroxyacyl-[acyl-car 33.5 48 0.0017 22.8 3.9 28 22-50 107-134 (152)
52 1yn8_A NBP2, NAP1-binding prot 33.4 40 0.0014 19.0 3.0 14 21-34 19-32 (59)
53 2fpe_A C-JUN-amino-terminal ki 33.2 27 0.00092 20.2 2.2 13 21-33 21-33 (62)
54 1z6b_A Pffabz, fatty acid synt 33.1 48 0.0016 22.5 3.8 16 21-36 106-121 (154)
55 3e0e_A Replication protein A; 33.0 54 0.0018 21.2 3.9 17 21-37 63-79 (97)
56 3r8s_K 50S ribosomal protein L 32.5 75 0.0026 22.2 4.7 35 20-54 31-67 (122)
57 1vq8_K 50S ribosomal protein L 32.5 85 0.0029 22.3 5.1 36 17-53 42-77 (132)
58 1x6o_A Eukaryotic initiation f 31.8 51 0.0018 24.3 4.0 51 21-79 35-87 (174)
59 2gnc_A SLIT-ROBO RHO GTPase-ac 31.5 44 0.0015 19.1 3.0 16 21-36 24-39 (60)
60 3d37_A Tail protein, 43 kDa; s 31.5 60 0.002 25.7 4.6 37 21-64 52-90 (381)
61 1zuy_A Myosin-5 isoform; SH3 d 31.0 31 0.0011 19.4 2.2 14 21-34 19-32 (58)
62 2wnv_C C1Q chain C, complement 31.0 65 0.0022 21.8 4.2 31 21-51 96-129 (131)
63 3a8g_B NitrIle hydratase subun 30.7 23 0.00077 27.1 1.9 35 19-54 120-159 (212)
64 2xsk_A CSGC; chaperone; 1.70A 30.5 44 0.0015 23.3 3.2 21 21-41 70-90 (110)
65 2lkn_A AH receptor-interacting 30.4 28 0.00097 25.2 2.3 17 17-33 22-38 (165)
66 3hks_A EIF-5A-2, eukaryotic tr 30.3 99 0.0034 22.6 5.3 50 21-78 33-84 (167)
67 1wi5_A RRP5 protein homolog; S 30.3 40 0.0014 22.4 2.9 16 21-36 67-82 (119)
68 2equ_A PHD finger protein 20-l 30.2 1E+02 0.0035 19.5 4.7 36 20-65 8-43 (74)
69 1wru_A 43 kDa tail protein; ba 29.6 66 0.0023 25.3 4.5 36 21-63 47-84 (379)
70 2wnv_A C1Q chain A, complement 29.5 71 0.0024 21.6 4.2 30 21-51 97-131 (134)
71 1w70_A Neutrophil cytosol fact 29.4 36 0.0012 19.5 2.3 14 21-34 22-35 (60)
72 2lj0_A Sorbin and SH3 domain-c 29.1 34 0.0012 20.7 2.2 14 21-34 24-37 (65)
73 1zx6_A YPR154WP; SH3 domain, p 28.9 38 0.0013 19.2 2.3 14 21-34 20-33 (58)
74 1k4u_S Phagocyte NADPH oxidase 28.5 35 0.0012 19.7 2.1 14 21-34 23-36 (62)
75 2oaw_A Spectrin alpha chain, b 28.5 82 0.0028 17.9 3.8 13 21-33 19-31 (65)
76 3tre_A EF-P, elongation factor 28.4 58 0.002 24.2 3.8 54 18-79 8-62 (191)
77 2wnv_B C1Q chain B, complement 28.4 88 0.003 21.3 4.5 31 21-51 98-131 (136)
78 2eyx_A V-CRK sarcoma virus CT1 28.3 27 0.00093 20.7 1.6 14 21-34 26-39 (67)
79 2g6f_X RHO guanine nucleotide 28.3 37 0.0013 19.3 2.2 14 21-34 22-35 (59)
80 3i4o_A Translation initiation 27.5 25 0.00085 22.9 1.4 29 17-52 49-77 (79)
81 3j21_J 50S ribosomal protein L 27.4 1.5E+02 0.0053 21.2 5.8 37 17-54 51-87 (141)
82 1y43_B Aspergillopepsin II hea 27.1 1.4E+02 0.005 21.8 5.7 14 22-35 57-70 (173)
83 2bzy_A CRK-like protein, CRKL 27.0 41 0.0014 19.7 2.3 14 21-34 21-34 (67)
84 3u23_A CD2-associated protein; 27.0 59 0.002 18.5 3.0 15 21-35 25-39 (65)
85 2j05_A RAS GTPase-activating p 27.0 39 0.0013 19.7 2.2 13 21-33 24-36 (65)
86 2fpf_A C-JUN-amino-terminal ki 26.9 39 0.0013 20.0 2.2 13 21-33 24-36 (71)
87 2p26_A Integrin beta-2; hybrid 26.9 98 0.0034 24.2 5.0 14 22-35 85-98 (280)
88 2khi_A 30S ribosomal protein S 26.8 53 0.0018 21.7 3.0 16 21-36 75-90 (115)
89 1ueb_A EF-P, TT0860, elongatio 26.8 1E+02 0.0036 22.6 4.9 50 21-78 6-56 (184)
90 1d1n_A Initiation factor 2; be 26.7 35 0.0012 23.1 2.1 16 17-32 77-92 (99)
91 2f41_A Transcription factor FA 26.6 1E+02 0.0036 19.8 4.5 15 21-35 72-86 (121)
92 3k67_A Putative dehydratase AF 26.4 40 0.0014 23.8 2.5 16 21-36 115-130 (159)
93 2lcs_A NAP1-binding protein 2; 26.3 49 0.0017 20.0 2.6 14 21-34 23-36 (73)
94 3oyy_A EF-P, elongation factor 26.1 82 0.0028 23.4 4.2 52 19-78 7-59 (191)
95 2khj_A 30S ribosomal protein S 26.0 56 0.0019 21.3 3.0 16 21-36 75-90 (109)
96 2l55_A SILB,silver efflux prot 25.9 70 0.0024 20.5 3.4 19 18-36 44-62 (82)
97 2cuc_A SH3 domain containing r 25.7 63 0.0022 18.8 3.0 15 21-35 25-39 (70)
98 3kcp_B Cellulosome anchoring p 25.6 1.3E+02 0.0044 22.7 5.2 32 17-53 25-56 (187)
99 2a28_A BZZ1 protein; SH3 domai 25.6 39 0.0013 18.8 1.9 14 21-34 18-31 (54)
100 1jo8_A ABP1P, actin binding pr 25.4 36 0.0012 19.3 1.7 13 21-33 18-30 (58)
101 2xmf_A Myosin 1E SH3; motor pr 25.4 45 0.0015 19.0 2.2 14 21-34 23-36 (60)
102 1iq6_A (R)-hydratase, (R)-spec 25.3 1.1E+02 0.0038 19.4 4.4 15 22-36 88-102 (134)
103 2bz8_A SH3-domain kinase bindi 25.3 33 0.0011 19.5 1.6 13 21-33 19-31 (58)
104 3coo_A Spondin-1; reelin-N dom 25.2 37 0.0013 25.0 2.2 30 21-55 49-78 (180)
105 2o9s_A Ponsin; SH3 domain, sig 24.9 48 0.0016 19.3 2.3 13 21-33 24-36 (67)
106 3bbo_M Ribosomal protein L14; 24.8 1.3E+02 0.0044 21.0 4.8 32 22-53 33-66 (121)
107 2rde_A Uncharacterized protein 24.8 1.8E+02 0.0061 21.2 6.0 37 19-55 175-211 (251)
108 1g2b_A Spectrin alpha chain; c 24.6 37 0.0013 19.6 1.7 14 21-34 39-52 (62)
109 1gcq_C VAV proto-oncogene; SH3 24.5 41 0.0014 19.8 1.9 13 21-33 28-40 (70)
110 2xzm_Q Ribosomal protein S17 c 24.5 85 0.0029 23.0 4.0 22 40-64 65-86 (157)
111 2ifr_A Scytalidopepsin B; enzy 24.4 1.2E+02 0.0041 22.9 4.9 14 22-35 83-96 (206)
112 1uti_A GRB2-related adaptor pr 24.4 38 0.0013 19.1 1.7 13 21-33 19-31 (58)
113 2dl8_A SLIT-ROBO RHO GTPase-ac 24.4 68 0.0023 19.0 3.0 16 21-36 27-42 (72)
114 3rnj_A Brain-specific angiogen 24.4 37 0.0013 19.9 1.7 12 20-31 25-36 (67)
115 4e6r_A Cytoplasmic protein NCK 24.3 49 0.0017 18.5 2.2 15 20-34 18-32 (58)
116 2z1c_A Hydrogenase expression/ 24.2 45 0.0015 21.4 2.2 14 19-32 33-46 (75)
117 2p1g_A Putative xylanase; stru 24.0 2.1E+02 0.007 22.2 6.3 64 19-91 169-239 (249)
118 1cka_A C-CRK N-terminal SH3 do 23.6 38 0.0013 19.1 1.6 13 21-33 19-31 (57)
119 2d6f_A Glutamyl-tRNA(Gln) amid 23.4 88 0.003 26.1 4.3 58 20-93 14-73 (435)
120 1y0m_A 1-phosphatidylinositol- 23.2 41 0.0014 19.2 1.7 13 21-33 21-33 (61)
121 1sem_A SEM-5; SRC-homology 3 ( 23.1 39 0.0013 19.0 1.6 13 21-33 20-32 (58)
122 4a18_X RPL18A, 60S ribosomal p 22.9 23 0.00078 26.9 0.6 75 23-99 68-153 (189)
123 2v1q_A SLA1, cytoskeleton asse 22.9 47 0.0016 18.7 1.9 12 21-32 20-31 (60)
124 2ew3_A SH3-containing GRB2-lik 22.8 51 0.0018 19.6 2.2 14 21-34 21-34 (68)
125 1zlm_A Osteoclast stimulating 22.8 47 0.0016 18.8 1.9 13 21-33 21-33 (58)
126 2fhd_A RAD9 homolog, DNA repai 22.4 38 0.0013 24.9 1.7 12 20-31 62-73 (153)
127 2lkt_A Retinoic acid receptor 22.4 42 0.0014 22.5 1.9 15 17-31 3-17 (125)
128 4f14_A Nebulette; SH3 domain, 22.4 59 0.002 18.5 2.3 13 21-33 24-36 (64)
129 2x3w_D Syndapin I, protein kin 22.3 43 0.0015 19.0 1.7 12 21-32 21-32 (60)
130 2l0a_A STAM-1, signal transduc 22.1 79 0.0027 19.2 3.0 15 21-35 35-49 (72)
131 2do3_A Transcription elongatio 22.0 40 0.0014 21.5 1.6 28 21-55 17-44 (69)
132 1ue9_A Intersectin 2; beta bar 22.0 59 0.002 19.6 2.4 14 21-34 25-38 (80)
133 4ep8_B Urease subunit beta; al 22.0 19 0.00066 24.8 0.0 32 16-48 60-96 (101)
134 2kxc_A Brain-specific angiogen 22.0 44 0.0015 19.5 1.7 12 21-32 25-36 (67)
135 3a5z_B EF-P, elongation factor 22.0 1E+02 0.0035 22.8 4.1 51 20-78 10-61 (191)
136 3frn_A Flagellar protein FLGA; 22.0 88 0.003 24.8 3.9 52 17-74 205-256 (278)
137 3c0c_A Endophilin-A2; endocyto 21.9 58 0.002 19.4 2.3 14 21-34 31-44 (73)
138 2ebp_A SAM and SH3 domain-cont 21.9 43 0.0015 20.2 1.7 14 21-34 29-42 (73)
139 1ruw_A Myosin-3 isoform, MYO3; 21.9 56 0.0019 19.1 2.2 14 21-34 21-34 (69)
140 2jte_A CD2-associated protein; 21.8 50 0.0017 19.0 1.9 13 21-33 24-36 (64)
141 4fxt_A Uncharacterized protein 21.8 2.6E+02 0.0088 21.0 6.9 52 24-80 76-135 (202)
142 2j6f_A CD2-associated protein; 21.7 56 0.0019 18.7 2.1 13 21-33 19-31 (62)
143 2d7e_A Primosomal protein N'; 21.6 1.6E+02 0.0054 19.1 4.6 25 22-54 26-51 (105)
144 2drm_A Acanthamoeba myosin IB; 21.6 44 0.0015 18.8 1.6 13 21-33 21-33 (58)
145 2ecz_A Sorbin and SH3 domain-c 21.4 56 0.0019 19.1 2.1 15 21-35 25-39 (70)
146 1k1z_A VAV; SH3, proto-oncogen 21.3 50 0.0017 19.9 1.9 13 21-33 36-48 (78)
147 3u5c_L RP41, S18, YS12, 40S ri 21.2 1.1E+02 0.0038 22.4 4.0 21 41-64 67-87 (156)
148 2vwf_A Growth factor receptor- 21.2 49 0.0017 18.6 1.7 13 21-33 20-32 (58)
149 1uj0_A Signal transducing adap 21.1 48 0.0016 19.1 1.7 13 21-33 23-35 (62)
150 1oot_A Hypothetical 40.4 kDa p 21.0 54 0.0018 18.6 1.9 14 21-34 21-34 (60)
151 1i07_A Epidermal growth factor 21.0 48 0.0016 18.9 1.7 12 21-32 19-30 (60)
152 2f3x_A Transcription factor FA 20.9 1.4E+02 0.0048 20.7 4.5 15 21-35 108-122 (157)
153 1w1f_A Tyrosine-protein kinase 20.8 54 0.0019 18.8 1.9 14 21-34 25-38 (65)
154 2zkq_q 40S ribosomal protein S 20.8 90 0.0031 22.9 3.5 23 39-64 67-89 (158)
155 3u5e_S L18A, 60S ribosomal pro 20.7 25 0.00085 26.3 0.4 75 23-99 54-140 (172)
156 4hcz_A PHD finger protein 1; p 20.7 1.6E+02 0.0055 18.2 4.8 36 20-64 2-37 (58)
157 2ak5_A RHO guanine nucleotide 20.5 47 0.0016 19.1 1.6 13 21-33 24-36 (64)
158 1tuc_A Alpha-spectrin; capping 20.5 50 0.0017 19.2 1.7 14 21-34 7-20 (63)
159 1whi_A Ribosomal protein L14; 20.5 1.7E+02 0.0058 20.4 4.7 32 22-53 33-66 (122)
160 2iim_A Proto-oncogene tyrosine 20.4 56 0.0019 18.7 1.9 13 21-33 24-36 (62)
161 4glm_A Dynamin-binding protein 20.3 66 0.0023 18.7 2.3 14 21-34 31-44 (72)
162 3kd4_A Putative protease; stru 20.3 76 0.0026 26.3 3.3 20 17-36 101-120 (506)
163 3tee_A Flagella basal BODY P-r 20.2 2.2E+02 0.0074 21.2 5.6 43 18-66 137-179 (219)
164 2wkd_A ORF34P2; SSB, single-st 20.2 93 0.0032 21.8 3.3 17 19-35 50-67 (119)
165 2c2i_A RV0130; hotdog, hydrata 20.2 75 0.0026 21.1 2.8 16 21-36 99-114 (151)
166 2dbk_A CRK-like protein; struc 20.2 61 0.0021 20.1 2.2 14 21-34 36-49 (88)
167 2k4k_A GSP13, general stress p 20.1 83 0.0029 21.3 3.0 16 21-36 51-66 (130)
No 1
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=100.00 E-value=9.2e-57 Score=323.23 Aligned_cols=112 Identities=59% Similarity=0.984 Sum_probs=110.2
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCC
Q psy3772 2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP 81 (119)
Q Consensus 2 ~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP 81 (119)
|||+.+|++|| +.|+|+|+|||||+|++++.||+++|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||
T Consensus 2 ~~i~~~e~~~~---~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP 78 (114)
T 3r8s_P 2 NIIKQLEQEQM---KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSP 78 (114)
T ss_dssp CHHHHHHGGGC---CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCT
T ss_pred hHHHHHHHHHh---ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCC
Confidence 79999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEeccccccceeeecCCCCcceeeeeec
Q psy3772 82 IISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116 (119)
Q Consensus 82 ~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~~ 116 (119)
.|++|||+++|++||||||||||+.||||||||+.
T Consensus 79 ~I~~IeV~r~gkvRRAKLyYLR~~~GKaarike~~ 113 (114)
T 3r8s_P 79 VVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL 113 (114)
T ss_dssp TEEEEEEEECEECCSSCCGGGTTCCHHHHCCEECC
T ss_pred ccceEEEEEccccchhheeeecCCcchHHhhhhhh
Confidence 99999999999999999999999999999999975
No 2
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=100.00 E-value=9e-56 Score=334.75 Aligned_cols=117 Identities=44% Similarity=0.719 Sum_probs=100.1
Q ss_pred CchHHHHHHHHHHHh-cCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeec
Q psy3772 1 MNLIQKIEQEEIIRL-KKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLY 79 (119)
Q Consensus 1 m~li~~~e~~~~~~~-~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~ 79 (119)
||+|+.||++|+.++ +.++|+|+|||||+|++++.||+++|+|.|+|+||+++|+|+++||||||+++|+|||++||||
T Consensus 5 M~li~~le~eqlk~l~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fplh 84 (166)
T 2zjr_M 5 IKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA 84 (166)
T ss_dssp CCCCHHHHHHHTTGGGCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHHHHHhhccccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecC
Confidence 789999999999322 2799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEEEEEeccccccceeeecCCCCcceeeeeecc
Q psy3772 80 SPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLL 117 (119)
Q Consensus 80 SP~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~~~ 117 (119)
||.|++|||+++|||||||||||||+.||+|||||+..
T Consensus 85 SP~I~kIEVvrrGKVRRAKLYYLRd~~GKaARIke~~~ 122 (166)
T 2zjr_M 85 SPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDRS 122 (166)
T ss_dssp CTTEEEEEEEECCCCSSSCCGGGCC-------------
T ss_pred CCccceEEEEeccccchhheeeccCCCCchhheehhhc
Confidence 99999999999999999999999999999999999753
No 3
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=100.00 E-value=1.7e-54 Score=322.12 Aligned_cols=112 Identities=45% Similarity=0.797 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCC
Q psy3772 2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP 81 (119)
Q Consensus 2 ~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP 81 (119)
+||+.+|++|+ +.++|+|+|||||+|++++.||+++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||
T Consensus 5 ~li~~ie~~~~---~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl~SP 81 (146)
T 3v2d_T 5 ALIKLVESRYV---RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSP 81 (146)
T ss_dssp HHHHHHHHTTC---CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCT
T ss_pred HHHHHHHHHHh---hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCC
Confidence 48999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEeccccccceeeecCCCCccee--eeeec
Q psy3772 82 IISSIIVKRRGDVRRAKLYYLRKCSGKSAR--IKEKL 116 (119)
Q Consensus 82 ~I~~IeVl~~~kvrRakLyYLR~~~gK~ar--ike~~ 116 (119)
.|++|||+++|+|||||||||||+.||+|| |||+.
T Consensus 82 ~I~~IeVvrrgkVRRAKLYYLR~~~GKaar~~ike~~ 118 (146)
T 3v2d_T 82 LIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADR 118 (146)
T ss_dssp TEEEEEEEECEECSSSCCGGGGGCCHHHHHHHSEECH
T ss_pred ccceEEEEecCccchhheeeccCCcchhHHHHHHHHH
Confidence 999999999999999999999999999999 99975
No 4
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.2e-47 Score=269.71 Aligned_cols=94 Identities=29% Similarity=0.503 Sum_probs=91.5
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCCccceEEEEEeccccccc
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAK 98 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP~I~~IeVl~~~kvrRak 98 (119)
+|+|+|||||+|++++. |+++|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||.|++|||+++||+||||
T Consensus 1 iP~f~~GDtv~V~~~i~-g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaK 79 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADP-YASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDS 79 (98)
T ss_pred CCccCCCCEEEEEEEEC-CCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCccccee
Confidence 69999999999999999 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCcceeee
Q psy3772 99 LYYLRKCSGKSARIK 113 (119)
Q Consensus 99 LyYLR~~~gK~arik 113 (119)
||||||+++|.+.+.
T Consensus 80 LyYLR~~~~~~st~~ 94 (98)
T 2ftc_K 80 LLYLRDALPEYSTFD 94 (98)
T ss_pred EEEeccCCcccceec
Confidence 999999999988764
No 5
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9e-45 Score=285.64 Aligned_cols=103 Identities=37% Similarity=0.643 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCCccc
Q psy3772 5 QKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIIS 84 (119)
Q Consensus 5 ~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP~I~ 84 (119)
+.+|++|+ ++++|+|+|||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|+
T Consensus 129 e~ie~~q~---kkdiPeFr~GDtV~V~vkI~E-~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLhSP~I~ 204 (233)
T 3bbo_R 129 KAVHAAEE---LRPVPGIRTGDIVQIRLEVPE-NKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIK 204 (233)
T ss_dssp THHHHTTC---CSCCSSSCCCSCCCCCCCBCC-CSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCBSSSSS
T ss_pred HHHHHHhh---ccCCCccCCCCEEEEEEEecc-CcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecCCCccc
Confidence 45666665 789999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeccccccceeeecCCCCccee
Q psy3772 85 SIIVKRRGDVRRAKLYYLRKCSGKSAR 111 (119)
Q Consensus 85 ~IeVl~~~kvrRakLyYLR~~~gK~ar 111 (119)
+|||+++|||||||||||||+.+....
T Consensus 205 kIEVvRrgKVRRAKLYYLRd~lp~~ST 231 (233)
T 3bbo_R 205 EIKVVSHRKVRKARLYYLRDKLPRLST 231 (233)
T ss_dssp CCCCCCCSCCCCSCSSCCCCSSTTCSS
T ss_pred eEEEEeccccchhhhhhhhcCCccccc
Confidence 999999999999999999999987543
No 6
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=82.11 E-value=2.5 Score=28.42 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=40.2
Q ss_pred CCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeE-----EEEEeecCCccceEEEEEe
Q psy3772 23 VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGI-----ERTFQLYSPIISSIIVKRR 91 (119)
Q Consensus 23 ~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGV-----Er~f~l~SP~I~~IeVl~~ 91 (119)
..|+.|.++-... +-.|+|.+..+.- .+.|+||+|.+ ..|+ |.+| -.--|++++++.-
T Consensus 7 ~iGs~VSi~c~d~------lGvYQG~i~~vd~--~~~tItL~~~f-~NG~~~~s~eVtl--s~~DI~~L~ii~~ 69 (84)
T 2vc8_A 7 WLGSIVSINCGDS------LGVYQGRVSAVDQ--VSQTISLTRPF-HNGVKCLVPEVTF--RAGDITELKILEI 69 (84)
T ss_dssp TTTCEEEEECCTT------TCEEEEEEEEEET--TTTEEEEEEEE-ETTEECSSSEEEE--EGGGCSEEEEEEC
T ss_pred ccCCEEEEEECCC------ceEEEEEEEEecc--CCCeEEEehhh-hCCCCCCCcEEEE--EecChhheEEEec
Confidence 5689998886432 3499999999875 35789999986 3344 3333 2335788888765
No 7
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=81.82 E-value=6.7 Score=25.01 Aligned_cols=46 Identities=17% Similarity=0.424 Sum_probs=34.6
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEe
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQ 77 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~ 77 (119)
.|.|.+||.|.-.+ ..+ +.|.+.|.++.+.+ +++|. +.+ |.+.+-.
T Consensus 4 ~~~~~vGd~vmArW--~D~-----~yYpA~I~si~~~~---~Y~V~--F~d-G~~etvk 49 (67)
T 3p8d_A 4 SSEFQINEQVLACW--SDC-----RFYPAKVTAVNKDG---TYTVK--FYD-GVVQTVK 49 (67)
T ss_dssp -CCCCTTCEEEEEC--TTS-----CEEEEEEEEECTTS---EEEEE--ETT-SCEEEEE
T ss_pred CcccccCCEEEEEc--CCC-----CEeeEEEEEECCCC---eEEEE--EeC-CceEEEe
Confidence 68899999999997 333 69999999999874 58873 455 7665543
No 8
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=72.59 E-value=4.5 Score=26.02 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=27.7
Q ss_pred cccceEEEEEEEEecCCCceeEEEEEeec-CeeEEEE
Q psy3772 40 KRIQAYEGIVISRRNKGLNSNFIVRKISY-NEGIERT 75 (119)
Q Consensus 40 ~r~q~f~GvvI~~r~~g~~~tftlR~i~~-gvGVEr~ 75 (119)
.|.+.|.|.|.+.....-..++.+||-+. |-++|..
T Consensus 3 ~~~~~fvG~V~~~~~~~g~~~ie~rN~f~~GD~iEi~ 39 (89)
T 4he6_A 3 KTTREFAGLVLGYDPETGIATVQQRNHFRPGDEVEFF 39 (89)
T ss_dssp CSGGGCSEEEEEEETTTTEEEEEESSCBCTTCEEEEE
T ss_pred ccccEEEEEEEEEeCCCCEEEEEEcCCcCCCCEEEEE
Confidence 36789999999976553357899999765 8999954
No 9
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.53 E-value=2.6 Score=25.80 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=23.2
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEec
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN 54 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~ 54 (119)
-..|.+||+|+|. +|. ..-|+|+|....+
T Consensus 5 ~~~f~~GD~V~V~----~Gp---f~g~~G~V~evd~ 33 (59)
T 2e6z_A 5 SSGFQPGDNVEVC----EGE---LINLQGKILSVDG 33 (59)
T ss_dssp CSSCCTTSEEEEC----SST---TTTCEEEECCCBT
T ss_pred cccCCCCCEEEEe----ecC---CCCCEEEEEEEeC
Confidence 3569999999985 565 4589999999885
No 10
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=69.33 E-value=11 Score=26.86 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=41.2
Q ss_pred CCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEE--EEeecCeeEEEEEeecCCccceEEEEEe
Q psy3772 24 TGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV--RKISYNEGIERTFQLYSPIISSIIVKRR 91 (119)
Q Consensus 24 ~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftl--R~i~~gvGVEr~f~l~SP~I~~IeVl~~ 91 (119)
.|..|.|++. .| ..++|++...-+.+ +|| +++..... .+-++.|..++|+..
T Consensus 11 lGy~V~v~Lk--Dg-----s~~qG~I~~vd~k~----LtL~~~~a~~s~~-----~I~asdI~DLkVl~~ 64 (125)
T 4a53_A 11 YGSNVEVLLN--ND-----SKARGVITNFDSSN----SILQLRLANDSTK-----SIVTKDIKDLRILPK 64 (125)
T ss_dssp TTCEEEEEET--TS-----CEEEEEEEEEETTT----TEEEEEETTTEEE-----EEEGGGEEEEEECCS
T ss_pred cCceEEEEEC--CC-----CEeeEEEEeecCCe----eEEeccccccccc-----eeecccccceeeeec
Confidence 4889999986 45 38999999997654 555 99865544 889999999999976
No 11
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=66.13 E-value=5.4 Score=28.18 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=33.8
Q ss_pred CCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEe----cC-C-CceeEEEEEeecCeeEEEEEeec
Q psy3772 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRR----NK-G-LNSNFIVRKISYNEGIERTFQLY 79 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r----~~-g-~~~tftlR~i~~gvGVEr~f~l~ 79 (119)
..++|++|++|.+ +|. +|. |+... |+ | .-..+.+||+..|.-+|.+|+-.
T Consensus 12 ~~~~lr~G~~I~~-----~g~-----p~~--V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 67 (136)
T 2eif_A 12 NVGSLKVGQYVMI-----DGV-----PCE--IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 67 (136)
T ss_dssp EGGGCCTTSEEEE-----TTE-----EEE--EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETT
T ss_pred EHHHCcCCCEEEE-----CCE-----EEE--EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCC
Confidence 4678999999865 342 444 33332 22 3 22456799999999999999753
No 12
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=65.23 E-value=3.3 Score=31.59 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=27.1
Q ss_pred CCCCCCCEEEEEEEEecCCccccceE----EEEEEEEecC
Q psy3772 20 PDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRNK 55 (119)
Q Consensus 20 P~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvI~~r~~ 55 (119)
|.|.+||.|+|.-..+.| -+|...| +|+|++..+.
T Consensus 117 ~~F~vGd~Vrv~~~~~~g-HtRlP~Y~rg~~G~I~~~~g~ 155 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPG-HTRFPAYIRGKAGVVVGISPA 155 (206)
T ss_dssp TCCCTTCEEEECCCCCSS-CCSSCGGGTTCEEEEEEECCC
T ss_pred CCCcCCCEEEeCCCCCCC-cccccHhhcCCeeEEEEEecC
Confidence 569999999998765544 6777766 7999988753
No 13
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=64.90 E-value=22 Score=23.64 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=34.1
Q ss_pred CCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEe
Q psy3772 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQ 77 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~ 77 (119)
..+.|.+||.|.-.+ ..+ +.|.+.|.++.+.| ++|| .+.+ |+..+-.
T Consensus 18 ~~~~f~vGd~VlArW--~D~-----~yYPAkI~sV~~~~---~YtV--~F~D-G~~etvk 64 (85)
T 3qii_A 18 GSSEFQINEQVLACW--SDC-----RFYPAKVTAVNKDG---TYTV--KFYD-GVVQTVK 64 (85)
T ss_dssp ---CCCTTCEEEEEC--TTS-----CEEEEEEEEECTTS---EEEE--EETT-SCEEEEE
T ss_pred CCcccccCCEEEEEe--CCC-----CEeeEEEEEECCCC---eEEE--EEeC-CCeEEec
Confidence 356899999999998 333 69999999999875 6888 3455 7655543
No 14
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=63.76 E-value=12 Score=25.81 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=42.0
Q ss_pred CCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeec-Ce-----eEEEEEeecCCccceEEEEEec
Q psy3772 23 VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISY-NE-----GIERTFQLYSPIISSIIVKRRG 92 (119)
Q Consensus 23 ~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~-gv-----GVEr~f~l~SP~I~~IeVl~~~ 92 (119)
..|+.|.|+--.. +-.|+|.++.+. .+++||++.+. |+ -.|-+|.- --|.+++++...
T Consensus 10 wiG~~VSI~C~d~------LGVyQG~I~~V~----~~~ItL~kaFrNGiplk~~~~EVtLsa--~DI~~L~IIe~~ 73 (103)
T 2rm4_A 10 WIGCAVSIACDEV------LGVFQGLIKQIS----AEEITIVRAFRNGVPLRKQNAEVVLKC--TDIRSIDLIEPA 73 (103)
T ss_dssp GTTCEEEEEECTT------TCEEEEEEEEEE----TTEEEEEEEEETTEECSCSSSCEEEET--TTEEEEEEEECC
T ss_pred eeceEEEEeeCCc------ceEeeEEEEEcc----cceeEEhhhhhcCcCcCCCCceEEEEe--cchhheeeeccc
Confidence 4699999987433 349999999998 35699999763 55 35777744 348888887653
No 15
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=62.31 E-value=16 Score=21.61 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=22.2
Q ss_pred CCCCCCCEEEEEEEEecCCccccceEEEEEEEEecC
Q psy3772 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (119)
Q Consensus 20 P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~ 55 (119)
..|.+||.|+|. +|. ..-|+|.|......
T Consensus 3 ~~~~~Gd~V~V~----~Gp---f~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 3 VAFREGDQVRVV----SGP---FADFTGTVTEINPE 31 (58)
T ss_dssp CSCCTTCEEEEC----SGG---GTTCEEEEEEEETT
T ss_pred cccCCCCEEEEe----ecC---CCCcEEEEEEEcCC
Confidence 358999998875 464 45799999998754
No 16
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=61.38 E-value=4.4 Score=34.44 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=31.2
Q ss_pred CCCCCC-CCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEE
Q psy3772 17 KNIPDF-VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV 63 (119)
Q Consensus 17 ~~~P~f-~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftl 63 (119)
.++|.+ .+||+|.++=. ++|.|.|-+.+.-+.+.+++|-|
T Consensus 108 e~LP~V~~~GDII~Lhrv-------kIq~~ng~~~~v~~~~~~Sswav 148 (495)
T 1jb7_A 108 EDLPIIHRAGDIIRVHRA-------TLRLYNGQRQFNANVFYSSSWAL 148 (495)
T ss_dssp GGSCCCCEETCEEEEEEE-------EEEEETTEEEEEEETTTTCEEEE
T ss_pred HHCCCCCCCCCEEEEEEE-------EEEEECCcEEEEecCCCceEEEE
Confidence 579999 79999999643 25678888887777777788765
No 17
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=60.35 E-value=25 Score=27.66 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=38.9
Q ss_pred ccccceEEEEEEEEecCCCceeEEEEEe-ecCeeEEEEEeecCCccceEEEEEecc
Q psy3772 39 RKRIQAYEGIVISRRNKGLNSNFIVRKI-SYNEGIERTFQLYSPIISSIIVKRRGD 93 (119)
Q Consensus 39 k~r~q~f~GvvI~~r~~g~~~tftlR~i-~~gvGVEr~f~l~SP~I~~IeVl~~~k 93 (119)
..+.+.|+|..|-.++.++. |+.++.. .+|.-.|+.-.|..|.- ||+|++.
T Consensus 14 A~~~lnY~g~fV~~~~~~i~-s~ri~H~~~~~~~~e~L~~LdG~~r---eviR~~~ 65 (295)
T 3m4w_A 14 ASQSLNYELSFISINKQGVE-SLRYRHARLDNRPLAQLLQMDGPRR---EVVQRGN 65 (295)
T ss_dssp HHHHSEEEEEEEEEETTEEE-EEEEEEEECSSSEEEEEEECSSSCC---EEEEETT
T ss_pred HHhhCCeEEEEEEEeCCeEE-EEEEEEEeeCCEEEEEEEEcCCCcE---EEEEECC
Confidence 34568999999999987765 4555544 55666999999999874 8888864
No 18
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=53.49 E-value=18 Score=25.27 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=36.9
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCC--CceeEEEEEeecCeeEEEEEee----cCCccceEE
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG--LNSNFIVRKISYNEGIERTFQL----YSPIISSII 87 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g--~~~tftlR~i~~gvGVEr~f~l----~SP~I~~Ie 87 (119)
..+|+.|.+|.+ +|..-.+..|+ -.+-|+| .-..+.+||+..|.-+|.+|+- ..|.|+.-+
T Consensus 11 ~~~lrkG~~i~~-----~g~p~~Vve~~---~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~ 77 (136)
T 1bkb_A 11 AGELKEGSYVVI-----DGEPCRVVEIE---KSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFT 77 (136)
T ss_dssp GGGCCTTCEEEE-----TTEEEEEEEEE---EECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEE
T ss_pred HHHccCCCEEEE-----CCEEEEEEEEE---EecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEE
Confidence 457999999865 35322222221 1112332 2346779999999999999984 345555444
No 19
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=53.30 E-value=19 Score=25.09 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecC--eeEEE
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYN--EGIER 74 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~g--vGVEr 74 (119)
...|.+||.|+|. +|. ..-|+|.|.......- ..+|.=...| +.||.
T Consensus 89 ~~~~~~Gd~VrI~----~Gp---f~g~~g~V~~vd~~k~--~v~V~v~~~gr~tpvel 137 (152)
T 3p8b_B 89 VSGLEPGDLVEVI----AGP---FKGQKAKVVKIDESKD--EVVVQFIDAIVPIPVTI 137 (152)
T ss_dssp TTTCCTTCEEEEC----SST---TTTCEEEEEEEETTTT--EEEEEESSCSSCCEEEE
T ss_pred cccCCCCCEEEEe----eec---CCCCEEEEEEEeCCCC--EEEEEEEecceeEEEEE
Confidence 3579999999985 464 5689999999987643 3444334444 34553
No 20
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=51.53 E-value=44 Score=21.27 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEE
Q psy3772 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVR 64 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR 64 (119)
.....|.+||-|..++ ..| ..|.|.|.++... ..+++|+
T Consensus 9 ~~~~~f~vGddVLA~w--tDG-----l~Y~gtI~~V~~~--~gtC~V~ 47 (66)
T 2eqj_A 9 KPACKFEEGQDVLARW--SDG-----LFYLGTIKKINIL--KQSCFII 47 (66)
T ss_dssp CCCCCSCTTCEEEEEC--TTS-----CEEEEEEEEEETT--TTEEEEE
T ss_pred cccccccCCCEEEEEE--ccC-----cEEEeEEEEEccC--CcEEEEE
Confidence 3445799999999998 456 4999999999863 2366664
No 21
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=50.44 E-value=39 Score=28.50 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=24.7
Q ss_pred CCC--CCCCCCEEEEEEEEecCCccccceEEEEEEEEecC
Q psy3772 18 NIP--DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (119)
Q Consensus 18 ~~P--~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~ 55 (119)
.+| .|++||.|.|.- .+....+.++|+|..+...
T Consensus 75 ~l~~~~~~~Gd~v~~~~----~~~~~~~~~~g~v~~~~~~ 110 (646)
T 4b3f_X 75 ALPSNSFTSGDIVGLYD----AANEGSQLATGILTRVTQK 110 (646)
T ss_dssp CCCCCCCCTTCEEEEEE----TTTTSCCCEEEEEEEEETT
T ss_pred CCccCCCCCCCEEEEEe----cCCCCCceEEEEEEEEeCC
Confidence 466 599999998863 2233346899999998754
No 22
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=55.10 E-value=3.5 Score=27.28 Aligned_cols=71 Identities=15% Similarity=0.297 Sum_probs=48.6
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecC--CccceEEEEEeccccccc
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS--PIISSIIVKRRGDVRRAK 98 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~S--P~I~~IeVl~~~kvrRak 98 (119)
.|++||.+.-.+. .| +-|.+.|.++...+ +++|. +.. |-+.+.+... |+-++=++....+-.||.
T Consensus 6 ~~kvGd~clAkws--Dg-----~wY~A~I~~v~~~~---~y~V~--F~D-Gn~E~V~~s~LrPl~~~~~~~~~~~~~~~~ 72 (81)
T 2ldm_A 6 EFQINEQVLASWS--DS-----RFYPAKVTAVNKDG---TYTVK--FYD-GVVQTVKHIHVKAFSKDQNIVGNARGSRAH 72 (81)
Confidence 5999999999876 34 59999999987544 67773 334 7666666654 666666666666666666
Q ss_pred eeeecC
Q psy3772 99 LYYLRK 104 (119)
Q Consensus 99 LyYLR~ 104 (119)
-.-|..
T Consensus 73 ~~~~~~ 78 (81)
T 2ldm_A 73 SSHLXS 78 (81)
Confidence 554443
No 23
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=49.44 E-value=19 Score=24.24 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=19.6
Q ss_pred CCCCCEEEEEEEEecCCccccceEEEEEE
Q psy3772 22 FVTGDTIIVNLNVIEGTRKRIQAYEGIVI 50 (119)
Q Consensus 22 f~~GD~v~V~~~i~eg~k~r~q~f~GvvI 50 (119)
+.|||++.++..+.+ .+..+-.|++.+.
T Consensus 101 V~pGd~l~~~~~v~~-~~~~~~~~~~~~~ 128 (146)
T 3d6x_A 101 VRPGDRLDYEMSVVK-NRGNMWIFKGQAF 128 (146)
T ss_dssp CCTTCEEEEEEEEEE-EETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEE-eeCCEEEEEEEEE
Confidence 689999999998865 2344555666554
No 24
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=48.78 E-value=13 Score=26.31 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=32.1
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecC-C-CceeEEEEEeecCeeEEEEEeec
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK-G-LNSNFIVRKISYNEGIERTFQLY 79 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~-g-~~~tftlR~i~~gvGVEr~f~l~ 79 (119)
..+|++|.+|.+ +|..-++..|+= .+-|+ | .-..+.+||+..|.-+|.+|+-.
T Consensus 9 a~~lkkG~~i~~-----~g~p~~Vve~~~---~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 63 (138)
T 1iz6_A 9 VSKLKPGRYIII-----DDEPCRIVNITV---SSPGKHGSAKARIEAVGIFDGKVRSIVKPTS 63 (138)
T ss_dssp GGGCCTTSEEEE-----TTEEEEEEEEEE---CCCCTTSCCEEEEEEEETTTCCEEEEEEETT
T ss_pred HHHccCCCEEEE-----CCEEEEEEEEEe---ecCCCCCceEEEEEEEECCCCCEEEEEecCC
Confidence 457999998865 353222211111 01122 2 23467799999999999999753
No 25
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=48.33 E-value=43 Score=22.93 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEE
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIE 73 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVE 73 (119)
.+.+||.|.+.+.+++. .++ -...|.|+-+.-.|-.. +.-.|+||+
T Consensus 41 ~~~~G~~V~l~l~Lp~~-~~~-i~~~GkVvWi~p~~~~~-----~~p~G~GVq 86 (117)
T 3cnr_A 41 RYMLGDEVFLLLTLPDS-SER-LPVAGKVIWTTPAGAQG-----NRAAGIGVQ 86 (117)
T ss_dssp CCCTTCEEEEEEECTTC-SCE-EEEEEEEEEEECC-----------CCEEEEE
T ss_pred ccCCCCEEEEEEEcCCC-Cce-EEEEEEEEEecCCCCCC-----CCCCceEEE
Confidence 48999999999998753 333 35779999998665432 236788887
No 26
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=46.40 E-value=22 Score=25.18 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=19.3
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEE
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIV 49 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~Gvv 49 (119)
.+.|||++.+++.+.. .+..+-.|+|.+
T Consensus 110 ~V~PGd~L~i~v~~~~-~~~~~~~~~~~~ 137 (160)
T 4h4g_A 110 VVEPGDQLILNVTFER-YIRGIWKFKAVA 137 (160)
T ss_dssp CCCTTCEEEEEEEEEE-EETTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE-eeCCEEEEEEEE
Confidence 3689999999988753 344455666654
No 27
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=46.15 E-value=24 Score=24.99 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=20.8
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEE
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVI 50 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI 50 (119)
.+.|||++.+++.+.+ .+..+-.|+|.+.
T Consensus 124 pV~PGD~L~i~v~v~~-~~~~~~~~~~~~~ 152 (171)
T 2gll_A 124 PVTPGDRLEYHLEVLK-HKGMIWQVGGTAQ 152 (171)
T ss_dssp CCCTTCEEEEEEEEEE-ESSSEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE-EeCCEEEEEEEEE
Confidence 3679999999998875 3445566666654
No 28
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=45.76 E-value=21 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.5
Q ss_pred CCCCCCCCCEEEEE-EEEec
Q psy3772 18 NIPDFVTGDTIIVN-LNVIE 36 (119)
Q Consensus 18 ~~P~f~~GD~v~V~-~~i~e 36 (119)
+.+.|.+||+|+|. -++.+
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~ 76 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGE 76 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEE
T ss_pred cccccCCCCEEEEEEEEEEE
Confidence 67899999999998 55544
No 29
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=44.98 E-value=10 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=26.3
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceE----EEEEEEEec
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRN 54 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvI~~r~ 54 (119)
-|.|.+||.|+|.-..+ ..-+|+..| .|+|....+
T Consensus 136 ~~~F~vGd~Vrv~~~~~-~~HtR~P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASP-KGHARRARYVRGKTGTVVKHHG 174 (226)
T ss_dssp CCSCCTTCEEEECCCCC-SSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCC-CCcccccHHhCCCeEEEEEEec
Confidence 56799999999986554 346777766 688887764
No 30
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=44.46 E-value=39 Score=25.71 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=39.0
Q ss_pred CCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCC-CceeEEEEEeecCeeEEEEEe----ecCCccceEEE
Q psy3772 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG-LNSNFIVRKISYNEGIERTFQ----LYSPIISSIIV 88 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g-~~~tftlR~i~~gvGVEr~f~----l~SP~I~~IeV 88 (119)
...+|+.|.+|.+ +|+--++..|+= .+-|+| .-..+.+||+..|.-+|.+|+ +.-|.|++-+.
T Consensus 33 ~a~dlKkG~~I~i-----dG~p~~Vve~~h---vKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~ 100 (215)
T 1yby_A 33 SAGDFKNGVTFEL-----DGQIFQVIEFQH---VKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDM 100 (215)
T ss_dssp EGGGCCTTCEEEE-----TTEEEEEEEEEE---ECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEE
T ss_pred EhhhccCCCEEEE-----CCEEEEEEEEEE---EcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEE
Confidence 4568999999865 353322222221 112333 234567999999999999998 56677765543
No 31
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=43.70 E-value=68 Score=21.17 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=44.4
Q ss_pred CCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCCccceEEEEEecc
Q psy3772 24 TGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93 (119)
Q Consensus 24 ~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP~I~~IeVl~~~k 93 (119)
.|=.|.|+. .+| +.|+|++.+..-.. -++.|-|...+...=+.+ +....|++|+|+....
T Consensus 16 i~KeV~V~l--~dg-----~~y~G~l~tvDp~s--~sIvL~n~~~~~~~~~~i-I~G~aI~eI~v~~~~~ 75 (86)
T 1y96_A 16 IYKEVRVTA--SEK-----NEYKGWVLTTDPVS--ANIVLVNFLEDGSMSVTG-IMGHAVQTVETMNEGD 75 (86)
T ss_dssp TTCEEEEEE--TTT-----EEEEEEEEEECTTT--CCEEEEEECTTSCEEEEE-ECGGGEEEEEEEECCC
T ss_pred cCCEEEEEE--cCC-----CEEEEEEEEECCCc--eEEEEeecccCCeEEEEE-EecceEEEEEEecchh
Confidence 466677766 455 59999999998654 478888876666665444 6788999999998653
No 32
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=42.16 E-value=12 Score=28.74 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=26.2
Q ss_pred CCCCCCCCCEEEEEEEEecCCccccceE----EEEEEEEec
Q psy3772 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRN 54 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvI~~r~ 54 (119)
.-|.|.+||.|+|.-..+ ..-+|+..| .|+|....+
T Consensus 127 ~~~~F~vGd~Vrv~~~~~-~~HtR~P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 127 ARARFAVGDKVRVLNKNP-VGHTRMPRYTRGKVGTVVIDHG 166 (219)
T ss_dssp SCCCCCTTCEEEECCCCC-SSCCCSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCC-CCcccccHHHCCCeeEEEEEec
Confidence 347899999999976544 346777766 688877764
No 33
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=41.30 E-value=24 Score=26.49 Aligned_cols=33 Identities=9% Similarity=0.298 Sum_probs=24.6
Q ss_pred CCCCCC-CCCCEEEEEEEEecCCccccceEEEEEEEEecCC
Q psy3772 17 KNIPDF-VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG 56 (119)
Q Consensus 17 ~~~P~f-~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g 56 (119)
..+|.+ .+||+|.++=. ++|.|.|-+.+.-+.+
T Consensus 95 e~LP~V~~~GDIIlL~rv-------kiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 95 NDLPVIKQVGQPLLLHQI-------TLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp SCSCCCCSTTCEEEEEEE-------EEEEETTEEEEEEEEE
T ss_pred hhCCCCCCCCCEEEEEEE-------EEEEECCeEEEEEcCc
Confidence 589998 99999999753 2467777777766554
No 34
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=40.39 E-value=13 Score=28.77 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=26.3
Q ss_pred CCCCCCCCCEEEEEEEEecCCccccceE----EEEEEEEec
Q psy3772 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRN 54 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvI~~r~ 54 (119)
.-|.|.+||.|+|.-..+ ..-+|+..| .|+|....+
T Consensus 138 ~~~~F~vGd~Vrv~~~~~-~~HtR~P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 138 ASPRFKVGERIKTKNIHP-TGHTRFPRYARDKYGVIDEVYG 177 (229)
T ss_dssp SCCSCCTTCEEEECCCCC-SSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCC-CCcccCcHHHCCCeeEEEEEec
Confidence 347899999999976544 346777666 688877764
No 35
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=39.86 E-value=14 Score=26.39 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=26.5
Q ss_pred CCCCCCCCCEEEEEEEEecCCccccceE----EEEEEEEec
Q psy3772 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRN 54 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvI~~r~ 54 (119)
.-|.|.+||.|+|.-..+. .-.|+..| .|+|....+
T Consensus 33 ~~prF~vGDrVrvr~~~p~-gHtRlP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 33 GKSKFNVGDRVRIKDLPDL-FYTRTMTYTRGATGTIVRLVY 72 (126)
T ss_dssp CSCSSCTTCEEEECCCCCS-SCCSSCGGGTTCEEEEEEEEE
T ss_pred CCCccCCCCEEEEccCCCC-CceeccHHhCCCEEEEEEEec
Confidence 4578999999999865543 46777766 688877664
No 36
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=39.78 E-value=26 Score=21.66 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=14.9
Q ss_pred CCCCCCEEEEEEEEecCCccc
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKR 41 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r 41 (119)
.|++||.|.|.+.-.+.++.|
T Consensus 45 ~~~~Gd~V~v~V~~vd~~~~~ 65 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVRPEKRE 65 (80)
T ss_dssp GCCTTCEEEEEEEEEETTTTE
T ss_pred eeCCCCEEEEEEEEEECCCCE
Confidence 499999999988754433333
No 37
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=39.62 E-value=59 Score=27.13 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=40.6
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecC--eeEEEEEeecCCccceEEEEEeccccc
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYN--EGIERTFQLYSPIISSIIVKRRGDVRR 96 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~g--vGVEr~f~l~SP~I~~IeVl~~~kvrR 96 (119)
.+.+||.|+|... +..+ .+.|+|++|-....+ +..+.+=|+-+| +|+.. -.+++|+++.++....
T Consensus 11 ~~~~gd~v~~~~~---~~~~-~~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~------~~~~~~~~~~~~~~~~ 77 (438)
T 1zq1_A 11 NINVGDFVRITKE---EDGE-EVTYEGYIMPPYELS-AGDTLVLKLENGYNIGIAL------EKIRRIEVLERAKVKP 77 (438)
T ss_dssp TCCTTCEEEEEEE---SSSS-EEECCEEECCCCTTC-CCSEEEEEETTSCEEEEEG------GGEEEEEEEECCCCCC
T ss_pred CCCCCCEEEEEEC---CCcc-eeEEEEEEecCcccC-CCCeEEEEccCCceeeech------hhcceEEEeccCCCCc
Confidence 4778999999874 2222 248999999654433 334444466654 66642 2356788888765433
No 38
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=39.29 E-value=46 Score=23.32 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=31.4
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecC--CCceeEEEEEeecCeeEEEEEee
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK--GLNSNFIVRKISYNEGIERTFQL 78 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~--g~~~tftlR~i~~gvGVEr~f~l 78 (119)
+|+.|.+|.+ +|..-++-.|+=+ +-|+ +.-..+.+||+..|--+|.+||-
T Consensus 11 ~lrkG~~i~~-----~g~p~~Vve~~~~---KpGKgG~A~vr~k~knl~TG~~~e~tf~s 62 (138)
T 3cpf_A 11 ALRKNGFVVL-----KGRPCKIVEMSTS---KTGKHGHAKVHLVGIDIFTGKKYEDICPS 62 (138)
T ss_dssp GCCTTSEEEE-----TTEEEEEEEEEEE---CC----CCEEEEEEEETTTCCEEEEEEET
T ss_pred HCcCCCEEEE-----CCEEEEEEEEEec---cCCCCccEEEEEEEEECCCCCEEEEEeCC
Confidence 6899988865 3543333333211 1233 22345779999999999999965
No 39
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=39.20 E-value=30 Score=24.42 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=23.5
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecC
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~ 55 (119)
.+.||+.+.|++.-.. .+.|.|..|.-+..
T Consensus 34 ~y~pG~~~~VtL~~~~-----~~~F~GFllqAr~~ 63 (149)
T 2zou_A 34 FYKPGTSYRVTLSAAP-----PSYFRGFTLIALRE 63 (149)
T ss_dssp SBCTTCEEEEEEEECT-----TCCBSEEEEEEEET
T ss_pred eEcCCCcEEEEEeccC-----CCceEEEEEEEEec
Confidence 4899999999997322 25899999988753
No 40
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=39.19 E-value=43 Score=23.85 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=22.6
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecC
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~ 55 (119)
.|.+||.|+|. +|. ..-|+|+|..+.+.
T Consensus 127 ~~~~Gd~V~V~----~GP---f~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 127 LFEPGEMVRVN----DGP---FADFNGVVEEVDYE 154 (181)
T ss_dssp CCCTTEEEEEC----SST---TTTEEEEEEEEETT
T ss_pred cCCCCCEEEEe----ccC---CCCcEEEEEEEeCC
Confidence 68999999885 564 56899999998754
No 41
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=39.00 E-value=32 Score=21.97 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=15.8
Q ss_pred CCCCCCCCCEEEEEEEEecC
Q psy3772 18 NIPDFVTGDTIIVNLNVIEG 37 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg 37 (119)
++..|++||.|.+.+...+|
T Consensus 50 ~l~~lk~Gd~V~F~~~~~~~ 69 (80)
T 2qcp_X 50 KMSEIKTGDKVAFNFVQQGN 69 (80)
T ss_dssp EECCCCTTCEEEEEEEEETT
T ss_pred hhhcCCCCCEEEEEEEEeCC
Confidence 46679999999999976543
No 42
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=37.93 E-value=43 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=18.9
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEE
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEG 47 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~G 47 (119)
.+.|||+|.+.=++.++.....+...|
T Consensus 66 ~l~~Gdvv~i~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 66 DVGRGDYVRVRGYIREGYYGGLECTAN 92 (105)
T ss_dssp CCCTTCEEEEEEEEEECTTSSEEEEEE
T ss_pred ccCCCCEEEEEEEEEEccCCCEEEEeC
Confidence 799999999977777764434454444
No 43
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=37.08 E-value=47 Score=19.49 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=16.3
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEE
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVI 50 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI 50 (119)
.|+.||+|.|.-...+| -+.|.+.
T Consensus 25 sf~~Gd~i~v~~~~~~~------Ww~g~~~ 48 (68)
T 1tg0_A 25 NFEKDQEIIVTSVEDAE------WYFGEYQ 48 (68)
T ss_dssp CBCTTCEEEEEEECSSS------EEEEEEE
T ss_pred CCCCCCEEEEEEecCCC------eEEEEEC
Confidence 49999999998653322 5666553
No 44
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=36.67 E-value=88 Score=21.77 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=17.9
Q ss_pred CCCCCEEEEEEEEecCCccccceEEEEE
Q psy3772 22 FVTGDTIIVNLNVIEGTRKRIQAYEGIV 49 (119)
Q Consensus 22 f~~GD~v~V~~~i~eg~k~r~q~f~Gvv 49 (119)
+.|||+|.+++.+.+. +..+-.|++.+
T Consensus 121 V~pGD~L~~~v~v~~~-~~g~~~~~~~~ 147 (168)
T 1u1z_A 121 VLPGDQLQLHAKFISV-KRSIWKFDCHA 147 (168)
T ss_dssp CCTTCEEEEEEEEEEE-ETTEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEE-eCCEEEEEEEE
Confidence 5699999999888652 33344555544
No 45
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1, structural genomics, PSI- protein structure initiative; HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1 b.106.1.1
Probab=36.61 E-value=49 Score=25.73 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=25.5
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEE
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV 63 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftl 63 (119)
.|.+||.|.|.+ |.. ..|.|.|-.+..++-..+.+|
T Consensus 56 ~~~~G~~v~v~i----G~~---~v~~G~Vd~v~~~~~~~~~~i 91 (361)
T 3cdd_A 56 PIKQGQACTVDI----GGE---RVITGYVDDWVPSYDESTITI 91 (361)
T ss_dssp CCCTTCEEEEEE----TTE---EEEEEEEEEEEEEECSSEEEE
T ss_pred ccCCCCEEEEEE----CCe---EEEEEEEeeEEccCCCCceEE
Confidence 578999999987 432 689999988886653333333
No 46
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=36.49 E-value=44 Score=24.48 Aligned_cols=51 Identities=12% Similarity=0.177 Sum_probs=32.1
Q ss_pred CCCCCCCEEEEEEEEecCCccccceEEEEEEEEecC-C-CceeEEEEEeecCeeEEEEEee
Q psy3772 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK-G-LNSNFIVRKISYNEGIERTFQL 78 (119)
Q Consensus 20 P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~-g-~~~tftlR~i~~gvGVEr~f~l 78 (119)
-+|++|..|.+ +|..-++..|+= .+-|+ | .-..+.++|+..|.-+|.+||-
T Consensus 34 ~dlrkG~~I~i-----dG~p~~Vve~~~---~KpGKHG~A~vr~k~knl~TG~k~E~tf~s 86 (167)
T 3er0_A 34 SALRKNGFVVI-----KSRPCKIVDMST---SKTGKHGHAKVHLVAIDIFTGKKLEDLSPS 86 (167)
T ss_dssp TTCCTTCEEEE-----TTEEEEEEEEEE---ECCSSSSCCEEEEEEEESSSCCCEEEEEES
T ss_pred HHccCCCEEEE-----CCEEEEEEEEEE---eCCCCcCceEEEEEEEEcCCCCEEEEEEcC
Confidence 36999998875 353333322221 12233 3 2346779999999999999964
No 47
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=36.41 E-value=36 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=15.7
Q ss_pred CCCCCCCCCEEEEEEEEecC
Q psy3772 18 NIPDFVTGDTIIVNLNVIEG 37 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg 37 (119)
.+..|++||.|.+.+...+|
T Consensus 58 ~l~~lk~Gd~V~F~~~~~~~ 77 (88)
T 2vb2_X 58 KMSEIKTGDKVAFNFVQQGN 77 (88)
T ss_dssp EECCCCTTCEEEEEEEEETT
T ss_pred hhhcCCCCCEEEEEEEEeCC
Confidence 45679999999999976543
No 48
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=36.40 E-value=63 Score=22.66 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=26.6
Q ss_pred CCCCCCEEEEEEEE--ecCCccccceEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNV--IEGTRKRIQAYEGIVISRRN 54 (119)
Q Consensus 21 ~f~~GD~v~V~~~i--~eg~k~r~q~f~GvvI~~r~ 54 (119)
.-..||+|.|.++- +++..++-|.+.++|+..+.
T Consensus 32 ~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk 67 (122)
T 3v2d_O 32 YATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKK 67 (122)
T ss_dssp CBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSS
T ss_pred ccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC
Confidence 46799999999984 45555566899999998764
No 49
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=36.33 E-value=67 Score=23.86 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEe
Q psy3772 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRR 53 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r 53 (119)
|-....+||+|..++++.+ ++.|.|.=+-++
T Consensus 14 DKT~~~VGdII~Atv~vnn-----I~nfAGYQvNIK 44 (166)
T 2bm3_A 14 DRNKGEVGDILIGTVRINN-----IKNFAGFQVNIV 44 (166)
T ss_dssp SCSCCCTTCEEEEEEEEES-----CTTEEEEEEEEE
T ss_pred cCcceeeCCEEEEEEEEcc-----cccccceEEEEE
Confidence 4456899999999999974 689999888776
No 50
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=36.32 E-value=38 Score=23.85 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=22.8
Q ss_pred CCCCCCCEEEEEEEEecCCccccceEEEEEEEEec
Q psy3772 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN 54 (119)
Q Consensus 20 P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~ 54 (119)
++|..||.|.|.....+ .+=--=+.|.|+.++|
T Consensus 59 ~~f~~gd~VEV~~~~~d--~ep~gWw~a~I~~~kg 91 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANE--QEPCGWWLARVRMMKG 91 (128)
T ss_dssp -CCCTTCEEEEEECC-----CCCEEEEEEEEEEET
T ss_pred cCCCCCCEEEEEecCCC--CCcCccEEEEEEEeeC
Confidence 57999999999876432 2222378999999986
No 51
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=33.55 E-value=48 Score=22.77 Aligned_cols=28 Identities=14% Similarity=0.558 Sum_probs=19.1
Q ss_pred CCCCCEEEEEEEEecCCccccceEEEEEE
Q psy3772 22 FVTGDTIIVNLNVIEGTRKRIQAYEGIVI 50 (119)
Q Consensus 22 f~~GD~v~V~~~i~eg~k~r~q~f~GvvI 50 (119)
..|||++.++..+.+ .+..+-.|+|.+.
T Consensus 107 V~PGd~L~i~~~v~~-~~~~~~~~~~~~~ 134 (152)
T 4i83_A 107 VIPGDQLVFEVELLT-SRRGIGKFNAVAK 134 (152)
T ss_dssp CCTTCEEEEEEEEEE-EETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEE-eeCCEEEEEEEEE
Confidence 589999999988764 2344456666543
No 52
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=33.41 E-value=40 Score=18.98 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=11.4
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|+.||+|.|.-..
T Consensus 19 s~~~Gd~i~v~~~~ 32 (59)
T 1yn8_A 19 RLAEGDIVFISYKH 32 (59)
T ss_dssp CBCTTCEEEEEEEE
T ss_pred CCCCCCEEEEEEcC
Confidence 49999999996654
No 53
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=33.18 E-value=27 Score=20.16 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=10.7
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 21 ELEVDDPLLVELQ 33 (62)
T ss_dssp CBCTTCEEEEEEE
T ss_pred cCCCCCEEEEEEe
Confidence 5999999999643
No 54
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=33.06 E-value=48 Score=22.51 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=13.4
Q ss_pred CCCCCCEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNVIE 36 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (119)
...|||+|.++..+.+
T Consensus 106 pV~pGd~l~~~~~v~~ 121 (154)
T 1z6b_A 106 PVLPGDTLTMQANLIS 121 (154)
T ss_dssp CCCTTCEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE
Confidence 4788999999998864
No 55
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=32.97 E-value=54 Score=21.16 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=13.3
Q ss_pred CCCCCCEEEEEEEEecC
Q psy3772 21 DFVTGDTIIVNLNVIEG 37 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg 37 (119)
.|.|||+|.|.=++.+.
T Consensus 63 ~i~~Gdvv~i~g~v~~~ 79 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVKQG 79 (97)
T ss_dssp CCCTTCEEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEEEc
Confidence 79999999997666543
No 56
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=32.53 E-value=75 Score=22.24 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=26.4
Q ss_pred CCCCCCCEEEEEEEE--ecCCccccceEEEEEEEEec
Q psy3772 20 PDFVTGDTIIVNLNV--IEGTRKRIQAYEGIVISRRN 54 (119)
Q Consensus 20 P~f~~GD~v~V~~~i--~eg~k~r~q~f~GvvI~~r~ 54 (119)
+.-..||+|.|.++- +++..++-+.+.++|+..+.
T Consensus 31 ~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk 67 (122)
T 3r8s_K 31 RYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKK 67 (122)
T ss_dssp CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSS
T ss_pred CcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC
Confidence 346799999999984 34444455899999998764
No 57
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=32.45 E-value=85 Score=22.29 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=27.8
Q ss_pred CCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEe
Q psy3772 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRR 53 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r 53 (119)
..+|.-..||+|.|.++-.-.+ .|-+.+.++|+..+
T Consensus 42 ~r~p~a~iGD~IvvsVKk~~p~-~kg~v~~AVIVRtk 77 (132)
T 1vq8_K 42 NRLPKAGLGDKITVSVTKGTPE-MRRQVLEAVVVRQR 77 (132)
T ss_dssp TCCCEECTTCEEEEEEEEECTT-TTTCEEEEEEEECS
T ss_pred cccCCCccCcEEEEEEEecCCC-CCCcEEEEEEEEcC
Confidence 4578889999999999753222 26789999999876
No 58
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=31.84 E-value=51 Score=24.28 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=30.6
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCC--CceeEEEEEeecCeeEEEEEeec
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG--LNSNFIVRKISYNEGIERTFQLY 79 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g--~~~tftlR~i~~gvGVEr~f~l~ 79 (119)
+|+.|..|.+ +|..-++-.|+=+ +-|+| .-..+.++|+..|--+|.+||-.
T Consensus 35 dlrkG~~I~i-----dG~p~~Vve~~~~---KpGKgG~A~vr~k~kni~TG~k~E~tf~s~ 87 (174)
T 1x6o_A 35 ALKKGGYVCI-----NGRPCKVIDLSVS---KTGKHGHAKVSIVATDIFTGNRLEDQAPST 87 (174)
T ss_dssp GCCTTCEEEE-----TTEEEEEEEEEEC---CC----CCEEEEEEEETTTCCEEEEEEETT
T ss_pred HccCCCEEEE-----CCEEEEEEEEEec---CCCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence 6899988754 3533333222211 11332 23467899999999999999753
No 59
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=31.54 E-value=44 Score=19.09 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=12.8
Q ss_pred CCCCCCEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNVIE 36 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (119)
.|+.||+|.|.-...+
T Consensus 24 s~~~Gd~i~v~~~~~~ 39 (60)
T 2gnc_A 24 SFKKGASLLLYHRASE 39 (60)
T ss_dssp CBCTTCEEEEEEEEET
T ss_pred CCCCCCEEEEEEecCC
Confidence 5999999999876543
No 60
>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein struct initiative, midwest center for structural genomics, unknown; 2.10A {Neisseria meningitidis MC58} SCOP: b.106.1.1 b.106.1.1
Probab=31.48 E-value=60 Score=25.72 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=26.6
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCC--ceeEEEE
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGL--NSNFIVR 64 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~--~~tftlR 64 (119)
.|.+|+.|.|.+ |.. ..|.|+|-.+..++- ..+++++
T Consensus 52 ~~~~G~~i~v~i----G~~---~v~~G~Vd~v~~~~~~~~~ti~v~ 90 (381)
T 3d37_A 52 PDLSGESCEVVI----DGQ---IVMTGIIGSQRHGKSKGSRELSLS 90 (381)
T ss_dssp CCCTTCEEEEEE----TTE---EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred ccCCCCEEEEEE----CCe---EEEEEEEeEEEeeecCCCcEEEEE
Confidence 468999999986 432 589999998886643 3455555
No 61
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=31.04 E-value=31 Score=19.41 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=11.6
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|+.||+|.|.-..
T Consensus 19 s~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 19 PLKKGDVIYITREE 32 (58)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 49999999997654
No 62
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=31.00 E-value=65 Score=21.77 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=20.4
Q ss_pred CCCCCCEEEEEEEEec---CCccccceEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNVIE---GTRKRIQAYEGIVIS 51 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e---g~k~r~q~f~GvvI~ 51 (119)
.+..||.|.|....-+ ++...-..|.|..|.
T Consensus 96 ~L~~GD~V~v~~~~~~~~~~~~~~~stFsGfLl~ 129 (131)
T 2wnv_C 96 RLQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLF 129 (131)
T ss_dssp EECTTCEEEEEEEEEECCCCCTTCCCEEEEEEEE
T ss_pred EECCCCEEEEEEeCCceEecCCCCCEEEEEEEEe
Confidence 5789999999885322 122355678887764
No 63
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=30.74 E-value=23 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceE----EEEE-EEEec
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIV-ISRRN 54 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f----~Gvv-I~~r~ 54 (119)
-|.|.+||.|+|.-..+ ..-+|+..| .|+| ....+
T Consensus 120 ~~~F~vGd~Vrv~~~~~-~gHtR~P~YvRGk~G~I~~~~~g 159 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYV-PGHIRMPAYCRGRVGTISHRTTE 159 (212)
T ss_dssp CCCCCTTCEEEECCCCC-SSCCSCCGGGTTCEEEEEEECSS
T ss_pred CcccCCCCeEEEecCCC-CCcccccHHHCCCeEEEEEEecc
Confidence 56799999999986544 346666665 6888 55554
No 64
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=30.53 E-value=44 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=17.4
Q ss_pred CCCCCCEEEEEEEEecCCccc
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKR 41 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r 41 (119)
.+.|||.|++.+.+..|..-+
T Consensus 70 nI~~~D~vkIiVTVSDG~slh 90 (110)
T 2xsk_A 70 NISPDDRVKIVVTVSDGQSLH 90 (110)
T ss_dssp ECCTTCEEEEEEEEECSSSCE
T ss_pred EecCCCcEEEEEEEeCCCeEE
Confidence 378999999999999886543
No 65
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=30.45 E-value=28 Score=25.18 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.9
Q ss_pred CCCCCCCCCCEEEEEEE
Q psy3772 17 KNIPDFVTGDTIIVNLN 33 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~~~ 33 (119)
-+.|.+..||+|.|||.
T Consensus 22 G~~p~~~~G~~V~vhY~ 38 (165)
T 2lkn_A 22 GELPDFQDGTKATFHYR 38 (165)
T ss_dssp SCCCCCCTTCEEEEECE
T ss_pred CCCCCCCCCCEEEEEEE
Confidence 46788999999999997
No 66
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=30.33 E-value=99 Score=22.58 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecC-C-CceeEEEEEeecCeeEEEEEee
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK-G-LNSNFIVRKISYNEGIERTFQL 78 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~-g-~~~tftlR~i~~gvGVEr~f~l 78 (119)
+|+.|..|.+ +|..-++..|+ -.+-|+ | .-..+.+||+..|--+|.+||-
T Consensus 33 dlrkG~~I~i-----dG~P~~Vve~~---~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s 84 (167)
T 3hks_A 33 NIRKGGHIVI-----KNRPCKVVEVS---TSKTGKHGHAKCHFVAIDIFTAKKLEDIVPS 84 (167)
T ss_dssp GCCTTSEEEE-----TTEEEEEEEEE---EECSSTTCCCEEEEEEEETTTCCEEEEEEET
T ss_pred HccCCCEEEE-----CCEEEEEEEEE---EeCCCCCCceEEEEEEEEcCCCCEEEEEEcC
Confidence 5999998875 35433333332 113345 3 2336779999999999999974
No 67
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=30.29 E-value=40 Score=22.37 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=13.2
Q ss_pred CCCCCCEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNVIE 36 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (119)
.|++||.|.|.+.-.+
T Consensus 67 ~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 67 KLKVGQYLNCIVEKVK 82 (119)
T ss_dssp CCCTTCEEEEEEEECC
T ss_pred EeCCCCEEEEEEEEEe
Confidence 4999999999987543
No 68
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.18 E-value=1e+02 Score=19.46 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=28.3
Q ss_pred CCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEE
Q psy3772 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRK 65 (119)
Q Consensus 20 P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~ 65 (119)
..|++||.+.-.+. .| +-|.+.|.++...| +++|+=
T Consensus 8 ~~~kvGd~clA~ws--Dg-----~~Y~A~I~~v~~~~---~~~V~f 43 (74)
T 2equ_A 8 FDFKAGEEVLARWT--DC-----RYYPAKIEAINKEG---TFTVQF 43 (74)
T ss_dssp CCCCTTCEEEEECS--SS-----SEEEEEEEEESTTS---SEEEEE
T ss_pred CCCCCCCEEEEECC--CC-----CEEEEEEEEECCCC---EEEEEE
Confidence 46999999999985 45 69999999997653 577753
No 69
>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44, structural Pro; 2.10A {Enterobacteria phage MU} SCOP: b.106.1.1 b.106.1.1
Probab=29.56 E-value=66 Score=25.33 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=26.0
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCC--ceeEEE
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGL--NSNFIV 63 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~--~~tftl 63 (119)
.|.+|+.|.|.+ |.. ..|.|+|-.+..++- ..+++|
T Consensus 47 ~~~~G~~l~v~i----G~~---~v~~G~Vd~v~~~~~~~~~~i~i 84 (379)
T 1wru_A 47 GLAPGKKFTLEI----GGQ---IVCTGYIDSRRRQMTADSMKITV 84 (379)
T ss_dssp GGCTTCEEEEEE----TTE---EEEEEEEEEEEEEECSSCEEEEE
T ss_pred ccCCCCEEEEEE----CCe---eEEEEEEEEEEeeEcCCceEEEE
Confidence 478999999987 432 589999988886533 345556
No 70
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=29.51 E-value=71 Score=21.59 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=19.9
Q ss_pred CCCCCCEEEEEEEEec-----CCccccceEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNVIE-----GTRKRIQAYEGIVIS 51 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e-----g~k~r~q~f~GvvI~ 51 (119)
.+..||.|-|.....+ ++. .-..|.|..|.
T Consensus 97 ~L~~GD~V~l~~~~~~~~~~~~~~-~~stFsGfLl~ 131 (134)
T 2wnv_A 97 QLQQGDQVWVEKDPKKGHIYQGSE-ADSVFSGFLIF 131 (134)
T ss_dssp EECTTCEEEEEEEEEEECCCCSSS-SCCEEEEEEEE
T ss_pred EECCCCEEEEEEeCCCceEEcCCC-CCEEEEEEEee
Confidence 5789999999885322 222 55678887764
No 71
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=29.43 E-value=36 Score=19.49 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.8
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 22 s~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 22 NFKAGDVIFLLSRI 35 (60)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEeC
Confidence 49999999998764
No 72
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=29.05 E-value=34 Score=20.70 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=11.6
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 24 s~~~Gd~i~v~~~~ 37 (65)
T 2lj0_A 24 ELRDGDIVDVMEKC 37 (65)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEeEeC
Confidence 59999999997654
No 73
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=28.85 E-value=38 Score=19.20 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.6
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|+.||+|.|.-..
T Consensus 20 s~~~Gd~i~v~~~~ 33 (58)
T 1zx6_A 20 GLKPGDKVQLLEKL 33 (58)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEec
Confidence 49999999998653
No 74
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=28.49 E-value=35 Score=19.66 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=11.8
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 23 s~~~Gd~i~v~~~~ 36 (62)
T 1k4u_S 23 EFQEGDIILVLSKV 36 (62)
T ss_dssp CBCSSCEEEEEEES
T ss_pred cCCCCCEEEEEEeC
Confidence 49999999998763
No 75
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=28.46 E-value=82 Score=17.91 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (65)
T 2oaw_A 19 TMKKGDILTLLNS 31 (65)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 4999999999764
No 76
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=28.38 E-value=58 Score=24.17 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=34.1
Q ss_pred CCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCC-CceeEEEEEeecCeeEEEEEeec
Q psy3772 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG-LNSNFIVRKISYNEGIERTFQLY 79 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g-~~~tftlR~i~~gvGVEr~f~l~ 79 (119)
...+|+.|.+|.+ +|..-++..|+- .+-|+| .-..+.+||+..|--+|.+|+-.
T Consensus 8 ~a~dlkkG~~I~~-----dG~p~~Vve~~~---~KpGKG~A~vr~klknl~tG~~~e~tf~s~ 62 (191)
T 3tre_A 8 STNEFRGGLKVMV-----DGDPCSIIDNEF---VKPGKGQAFNRVKFRNLKTGRVLERTFKSG 62 (191)
T ss_dssp EGGGCCTTCEEEE-----TTEEEEEEEEEE---ECCSSSCCEEEEEEEETTTCCEEEEEEETT
T ss_pred EHHHCCCCCEEEE-----CCEEEEEEEEEE---eeCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence 4568999999865 353322222221 122333 23456799999999999999764
No 77
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=28.36 E-value=88 Score=21.25 Aligned_cols=31 Identities=10% Similarity=0.305 Sum_probs=20.7
Q ss_pred CCCCCCEEEEEEEEec---CCccccceEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNVIE---GTRKRIQAYEGIVIS 51 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e---g~k~r~q~f~GvvI~ 51 (119)
.+..||.|-|.....+ ++...-..|.|..|.
T Consensus 98 ~L~~GD~V~v~~~~~~~~~~~~~~~stFsGfLl~ 131 (136)
T 2wnv_B 98 KLEQGENVFLQATDKNSLLGMEGANSIFSGFLLF 131 (136)
T ss_dssp EECTTCEEEEEEEEEECCBCBTTBCCEEEEEEEE
T ss_pred EECCCCEEEEEEeCCceEEcCCCCCEEEEEEEec
Confidence 5789999999885322 222355778887765
No 78
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=28.29 E-value=27 Score=20.65 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=11.6
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 26 s~~~Gd~i~v~~~~ 39 (67)
T 2eyx_A 26 ALEVGELVKVTKIN 39 (67)
T ss_dssp CBCSSEEEEEEEEC
T ss_pred ccCCCCEEEEEEec
Confidence 49999999998654
No 79
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=28.28 E-value=37 Score=19.33 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=11.5
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 22 s~~~Gd~i~v~~~~ 35 (59)
T 2g6f_X 22 SFSKGDVIHVTRVE 35 (59)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997653
No 80
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=27.53 E-value=25 Score=22.86 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=19.6
Q ss_pred CCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEE
Q psy3772 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISR 52 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~ 52 (119)
++.-.+.|||.|.|....- |.-.|-+|-+
T Consensus 49 k~~I~Il~GD~V~ve~~~y-------d~~kgrIi~R 77 (79)
T 3i4o_A 49 QHYIRILPEDRVVVELSPY-------DLSRGRIVYR 77 (79)
T ss_dssp HTTCCCCTTCEEEEEEETT-------EEEEEEEEEE
T ss_pred cCCccCCCCCEEEEEECcc-------CCCcEEEEEE
Confidence 4444689999999987522 3445777655
No 81
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.39 E-value=1.5e+02 Score=21.17 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=28.3
Q ss_pred CCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEec
Q psy3772 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN 54 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~ 54 (119)
+.+|.-.+||+|.|.++-.-. ..+-+.+.++|+..+.
T Consensus 51 ~r~~~A~iGD~IvvsVKk~~p-~~kg~V~kAVIVRtkk 87 (141)
T 3j21_J 51 RRLASAGVGDMVVATVKKGRP-DMRHQVVRAVIIRQRK 87 (141)
T ss_dssp TCCCCBCSSCEEEEEEEEECT-TTTTCEEEEEEEECSS
T ss_pred cccccCCcCCEEEEEEEecCC-CCcCceEEEEEEEeCC
Confidence 356788999999999985432 2356899999998764
No 82
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=27.10 E-value=1.4e+02 Score=21.76 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.0
Q ss_pred CCCCCEEEEEEEEe
Q psy3772 22 FVTGDTIIVNLNVI 35 (119)
Q Consensus 22 f~~GD~v~V~~~i~ 35 (119)
+.|||.|.|++.-.
T Consensus 57 v~~GD~i~~tV~~~ 70 (173)
T 1y43_B 57 ISEGDSIKVTVEAT 70 (173)
T ss_dssp CCTTCEEEEEEEEE
T ss_pred eCCCCEEEEEEEEc
Confidence 88999999998654
No 83
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=27.03 E-value=41 Score=19.74 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.7
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|+.||+|.|.-..
T Consensus 21 sf~~Gd~i~v~~~~ 34 (67)
T 2bzy_A 21 ALEVGDIVKVTRMN 34 (67)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred ccCCCCEEEEEEec
Confidence 59999999997654
No 84
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=27.03 E-value=59 Score=18.50 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.2
Q ss_pred CCCCCCEEEEEEEEe
Q psy3772 21 DFVTGDTIIVNLNVI 35 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (119)
.|..||+|.|.-...
T Consensus 25 s~~~Gd~i~v~~~~~ 39 (65)
T 3u23_A 25 ELKVGDIIDINEEVE 39 (65)
T ss_dssp CBCTTCEEEEEEEEE
T ss_pred CCCCCCEEEEEEecC
Confidence 599999999986543
No 85
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=27.02 E-value=39 Score=19.66 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (65)
T 2j05_A 24 SFLKGDMFIVHNE 36 (65)
T ss_dssp CBCTTCEEEEEEE
T ss_pred cCCCCCEEEEeEe
Confidence 4999999999764
No 86
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=26.93 E-value=39 Score=20.04 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=10.7
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (71)
T 2fpf_A 24 ELEVDDPLLVELQ 36 (71)
T ss_dssp CBCTTCEEEEEEE
T ss_pred cCcCCcEEEEeEe
Confidence 4999999999643
No 87
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=26.85 E-value=98 Score=24.16 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=11.3
Q ss_pred CCCCCEEEEEEEEe
Q psy3772 22 FVTGDTIIVNLNVI 35 (119)
Q Consensus 22 f~~GD~v~V~~~i~ 35 (119)
++|||.+.+.+.+.
T Consensus 85 LRpGd~vsF~V~vr 98 (280)
T 2p26_A 85 LRPGQAAAFNVTFR 98 (280)
T ss_dssp ECTTCCEEEEEEEC
T ss_pred ecCCCeEEEEEEEE
Confidence 78888888888775
No 88
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=26.84 E-value=53 Score=21.72 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=13.0
Q ss_pred CCCCCCEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNVIE 36 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (119)
.|++||.|.|.+.-..
T Consensus 75 ~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 75 VVNVGDVVEVMVLDID 90 (115)
T ss_dssp TCCTTCEEEEEEEEEE
T ss_pred EECCCCEEEEEEEEEE
Confidence 4999999999987543
No 89
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=26.81 E-value=1e+02 Score=22.58 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCC-ceeEEEEEeecCeeEEEEEee
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGL-NSNFIVRKISYNEGIERTFQL 78 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~-~~tftlR~i~~gvGVEr~f~l 78 (119)
+|+.|.+|.+ +|..-++..|+ -.+-|+|- -..+.+||+..|--+|.+|+-
T Consensus 6 dlkkG~~i~~-----dg~p~~Vve~~---~~KpGKG~A~vr~klknl~TG~~~e~tf~s 56 (184)
T 1ueb_A 6 DLRPGTKVKM-----DGGLWECVEYQ---HQKLGRGGAKVVAKFKNLETGATVERTFNS 56 (184)
T ss_dssp GCCTTCEEEE-----TTEEEEEEEEE---EEEETTSCCEEEEEEEESSSSCEEEEEEET
T ss_pred hcCCCCEEEE-----CCEEEEEEEEE---EeeCCCCceEEEEEEEECCCCCEEEEEECC
Confidence 6889988755 35433333333 22234442 335679999999999999975
No 90
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=26.69 E-value=35 Score=23.12 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=13.4
Q ss_pred CCCCCCCCCCEEEEEE
Q psy3772 17 KNIPDFVTGDTIIVNL 32 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~~ 32 (119)
.++.+|++||+|...-
T Consensus 77 ~~~~dik~GD~Ie~ye 92 (99)
T 1d1n_A 77 KNFNDIKEGDVIEAYV 92 (99)
T ss_dssp TTCSSCSSCSEEEEEC
T ss_pred cCcCCCCCCCEEEEEE
Confidence 5788999999998754
No 91
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=26.61 E-value=1e+02 Score=19.81 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=12.4
Q ss_pred CCCCCCEEEEEEEEe
Q psy3772 21 DFVTGDTIIVNLNVI 35 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (119)
..+|||+|.++..+.
T Consensus 72 Pv~~Gd~l~~~a~v~ 86 (121)
T 2f41_A 72 QVKQGERVVAKAKVT 86 (121)
T ss_dssp CCBTTCEEEEEEEEE
T ss_pred CcCCCCEEEEEEEEE
Confidence 367999999998886
No 92
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=26.38 E-value=40 Score=23.77 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.3
Q ss_pred CCCCCCEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNVIE 36 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (119)
.+.|||+|.+...+.+
T Consensus 115 PV~~GDtl~~~~~V~~ 130 (159)
T 3k67_A 115 PVRIGDVVRVEGVVSG 130 (159)
T ss_dssp CCCTTCEEEEEEEEEE
T ss_pred CcCCCCEEEEEEEEEE
Confidence 4789999999988764
No 93
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=26.28 E-value=49 Score=20.02 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=11.4
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|+.||+|.|.-..
T Consensus 23 s~~~Gd~i~v~~~~ 36 (73)
T 2lcs_A 23 RLAEGDIVFISYKH 36 (73)
T ss_dssp CBCTTCEEEEEEEE
T ss_pred CCcCCCEEEEEEEc
Confidence 49999999997653
No 94
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=26.11 E-value=82 Score=23.37 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCC-CceeEEEEEeecCeeEEEEEee
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG-LNSNFIVRKISYNEGIERTFQL 78 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g-~~~tftlR~i~~gvGVEr~f~l 78 (119)
..+|+.|.+|.+ +|..-++..|+ -.+-|+| .-..+.+||+..|.-+|.+|+-
T Consensus 7 a~dlk~G~~I~~-----dg~p~~Vve~~---~~KpGKG~A~vr~klknl~tG~~~e~tf~s 59 (191)
T 3oyy_A 7 AQEFRAGQVANI-----NGAPWVIQKAE---FNKSGRNAAVVKMKLKNLLTGAGTETVFKA 59 (191)
T ss_dssp GGGCCTTCEEEE-----TTEEEEEEEEE---EECCTTSCCEEEEEEEETTTCCEEEEEEET
T ss_pred HHhCCCCCEEEE-----CCEEEEEEEEE---eeeCCCCcEEEEEEEEECCCCCEEEEEeCC
Confidence 467999999865 35322222222 1122444 2334669999999999999975
No 95
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=26.04 E-value=56 Score=21.26 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=12.8
Q ss_pred CCCCCCEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNVIE 36 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (119)
.|++||.|.|.+.-.+
T Consensus 75 ~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 75 VLSVGDEVEAKFTGVD 90 (109)
T ss_dssp SCCTTCEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE
Confidence 3999999999886543
No 96
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=25.95 E-value=70 Score=20.47 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=15.6
Q ss_pred CCCCCCCCCEEEEEEEEec
Q psy3772 18 NIPDFVTGDTIIVNLNVIE 36 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~e 36 (119)
++..+++||.|.+.+...+
T Consensus 44 ~l~~lk~Gd~V~F~~~~~~ 62 (82)
T 2l55_A 44 LPQGLKAGDRVAFSFRLDP 62 (82)
T ss_dssp CCSSCSTTCEEEEEEEEET
T ss_pred HhhcCCCCCEEEEEEEECC
Confidence 4667999999999997654
No 97
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=25.65 E-value=63 Score=18.83 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=12.1
Q ss_pred CCCCCCEEEEEEEEe
Q psy3772 21 DFVTGDTIIVNLNVI 35 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (119)
.|..||+|.|.-...
T Consensus 25 s~~~Gd~i~v~~~~~ 39 (70)
T 2cuc_A 25 DLQKGEGIRVLGKYQ 39 (70)
T ss_dssp CBCTTCEEEEEEEEE
T ss_pred CCCCCCEEEEEEecC
Confidence 499999999986543
No 98
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=25.61 E-value=1.3e+02 Score=22.72 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEe
Q psy3772 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRR 53 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r 53 (119)
-|-....+||++.-++++.+ ++.|.|.=+-++
T Consensus 25 lDKt~a~VGdII~ATIkinn-----I~nfAGYQvNIK 56 (187)
T 3kcp_B 25 FDRNKGEVGDILIGTVRINN-----IKNFAGFQVNIV 56 (187)
T ss_dssp ESCSCCCTTCEEEEEEEEES-----CTTEEEEEEEEE
T ss_pred EcccceeeccEEEEEEEEcc-----cccccceEEeee
Confidence 35566899999999999975 689999988776
No 99
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=25.59 E-value=39 Score=18.84 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=11.4
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|+.||+|.|.-..
T Consensus 18 s~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 18 SIDPGDIITVIRGD 31 (54)
T ss_dssp CBCTTCEEEEEECC
T ss_pred cCCCCCEEEEEEec
Confidence 59999999997643
No 100
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=25.42 E-value=36 Score=19.33 Aligned_cols=13 Identities=38% Similarity=0.325 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|+.||+|.|.-.
T Consensus 18 s~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 18 TFVENDKIINIEF 30 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred ccCCCCEEEEEEe
Confidence 5999999999764
No 101
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=25.37 E-value=45 Score=19.02 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=11.6
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 23 s~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 23 SFNANDIIDIIKED 36 (60)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997653
No 102
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=25.34 E-value=1.1e+02 Score=19.44 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=12.2
Q ss_pred CCCCCEEEEEEEEec
Q psy3772 22 FVTGDTIIVNLNVIE 36 (119)
Q Consensus 22 f~~GD~v~V~~~i~e 36 (119)
..|||+|.++..+.+
T Consensus 88 v~~Gd~l~~~~~v~~ 102 (134)
T 1iq6_A 88 VFVGDEVTAEVEVTA 102 (134)
T ss_dssp CBTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEE
Confidence 578999999888754
No 103
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=25.33 E-value=33 Score=19.46 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (58)
T 2bz8_A 19 TISVGEIITNIRK 31 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred eECCCCEEEEEEe
Confidence 5999999999764
No 104
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=25.24 E-value=37 Score=25.00 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=23.3
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecC
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~ 55 (119)
.+.||+.+.|++.-.. .+.|.|..|.-+..
T Consensus 49 ~y~pG~~~~VtL~g~~-----~~~F~GFlLqAr~~ 78 (180)
T 3coo_A 49 FYKPGTSYRVTLSAAP-----PSYFRGFTLIALRE 78 (180)
T ss_dssp EECTTCEEEEEEEECT-----TCCBSCCEEEEEET
T ss_pred eecCCCcEEEEEeccC-----CCceeEEEEEEEcC
Confidence 3889999999997322 25899999987764
No 105
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=24.90 E-value=48 Score=19.33 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=11.2
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|+.||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (67)
T 2o9s_A 24 SFRKGERITLLRQ 36 (67)
T ss_dssp CBCTTCEEEEEEE
T ss_pred CCCCCCEEEEEEe
Confidence 4999999999865
No 106
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.81 E-value=1.3e+02 Score=20.97 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=24.6
Q ss_pred CCCCCEEEEEEEE--ecCCccccceEEEEEEEEe
Q psy3772 22 FVTGDTIIVNLNV--IEGTRKRIQAYEGIVISRR 53 (119)
Q Consensus 22 f~~GD~v~V~~~i--~eg~k~r~q~f~GvvI~~r 53 (119)
-..||+|.|.++- +++.=+|-+.+.++|+..+
T Consensus 33 a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtk 66 (121)
T 3bbo_M 33 ARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTC 66 (121)
T ss_dssp CCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECS
T ss_pred cccCcEEEEEEEEccCCCccccCcEEEEEEEEec
Confidence 6789999999984 3333346689999999876
No 107
>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI protein structure initiative, northeast structural genomics consortium, NESG; HET: C2E; 1.92A {Vibrio cholerae} SCOP: b.45.2.1 b.45.2.2 PDB: 1yln_A* 3kyg_A*
Probab=24.81 E-value=1.8e+02 Score=21.19 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=25.3
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecC
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~ 55 (119)
-+.+.+||.|.+.+....+.......+.|.|......
T Consensus 175 ~~~~~~g~~v~l~~~l~~~~~~~~~~~~~~V~~~~~~ 211 (251)
T 2rde_A 175 GKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRS 211 (251)
T ss_dssp SCCCCTTCEEEEEEBSSTTSSCBCSCEEEEEEEEEEC
T ss_pred CCCcCCCCEEEEEEEcCCCCcccceeEEEEEEEeEec
Confidence 3579999999998876422112234789999887643
No 108
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=24.65 E-value=37 Score=19.64 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.5
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|+.||+|.|.-..
T Consensus 39 sf~~Gd~i~v~~~~ 52 (62)
T 1g2b_A 39 TMKKGDILTLLNST 52 (62)
T ss_dssp CBCTTCEEEEEECC
T ss_pred CCCCCCEEEEEEec
Confidence 49999999997653
No 109
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=24.53 E-value=41 Score=19.79 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|+.||+|.|.-.
T Consensus 28 sf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 28 RLNPGDIVELTKA 40 (70)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CcCCCCEEEEEeC
Confidence 4999999999764
No 110
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=24.48 E-value=85 Score=22.98 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=17.8
Q ss_pred cccceEEEEEEEEecCCCceeEEEE
Q psy3772 40 KRIQAYEGIVISRRNKGLNSNFIVR 64 (119)
Q Consensus 40 ~r~q~f~GvvI~~r~~g~~~tftlR 64 (119)
-|-+.++|+|++-+ .+.|++|+
T Consensus 65 vRgr~l~G~VVS~K---MdKTIvV~ 86 (157)
T 2xzm_Q 65 IRGKIIKGLVISTK---MNRTVIIR 86 (157)
T ss_dssp CCSCEEEEEEEECC---STTEEEEE
T ss_pred eeeEEEEEEEEEec---CCccEEEE
Confidence 35579999999964 67899987
No 111
>2ifr_A Scytalidopepsin B; enzyme-transition state analog complex, hydrolase-hydrolase complex; HET: TA2; 1.95A {Scytalidium lignicola} SCOP: b.29.1.20 PDB: 1s2b_A* 1s2k_A* 2ifw_A*
Probab=24.42 E-value=1.2e+02 Score=22.88 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=12.0
Q ss_pred CCCCCEEEEEEEEe
Q psy3772 22 FVTGDTIIVNLNVI 35 (119)
Q Consensus 22 f~~GD~v~V~~~i~ 35 (119)
+.|||.|.|++.-.
T Consensus 83 vs~GD~i~~tV~~~ 96 (206)
T 2ifr_A 83 ISEGDSIQMSVTAT 96 (206)
T ss_dssp CCTTCEEEEEEEEE
T ss_pred eCCCCEEEEEEEEc
Confidence 88999999998754
No 112
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=24.42 E-value=38 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (58)
T 1uti_A 19 GFRSGEVVEVLDS 31 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEE
Confidence 5999999999764
No 113
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.38 E-value=68 Score=19.02 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=12.8
Q ss_pred CCCCCCEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNVIE 36 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (119)
.|+.||+|.|.-...+
T Consensus 27 s~~~Gd~i~v~~~~~~ 42 (72)
T 2dl8_A 27 SFKKGASLLLYQRASD 42 (72)
T ss_dssp CBCTTCEEEEEEEEET
T ss_pred ccCCCCEEEEEeecCC
Confidence 5999999999876543
No 114
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=24.38 E-value=37 Score=19.87 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=10.1
Q ss_pred CCCCCCCEEEEE
Q psy3772 20 PDFVTGDTIIVN 31 (119)
Q Consensus 20 P~f~~GD~v~V~ 31 (119)
-.|..||+|.|.
T Consensus 25 Lsf~~Gd~i~v~ 36 (67)
T 3rnj_A 25 LSFKEGDLITLL 36 (67)
T ss_dssp CCBCTTCEEEEC
T ss_pred ccCCCCCEEEEe
Confidence 359999999985
No 115
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=24.34 E-value=49 Score=18.47 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=11.9
Q ss_pred CCCCCCCEEEEEEEE
Q psy3772 20 PDFVTGDTIIVNLNV 34 (119)
Q Consensus 20 P~f~~GD~v~V~~~i 34 (119)
-.|..||+|.|.-..
T Consensus 18 Ls~~~Gd~i~v~~~~ 32 (58)
T 4e6r_A 18 LSLVXGSRVTVMEXC 32 (58)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred eeEeCCCEEEEeEcC
Confidence 359999999997654
No 116
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=24.16 E-value=45 Score=21.37 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=12.3
Q ss_pred CCCCCCCCEEEEEE
Q psy3772 19 IPDFVTGDTIIVNL 32 (119)
Q Consensus 19 ~P~f~~GD~v~V~~ 32 (119)
+|+..+||.|-||.
T Consensus 33 v~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 33 MPDTKPGDWVIVHT 46 (75)
T ss_dssp STTCCTTCEEEEET
T ss_pred eCCCCCCCEEEEec
Confidence 57899999999985
No 117
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=24.01 E-value=2.1e+02 Score=22.24 Aligned_cols=64 Identities=25% Similarity=0.268 Sum_probs=43.5
Q ss_pred CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCee-EEEE-Eee-----cCCccceEEEEEe
Q psy3772 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEG-IERT-FQL-----YSPIISSIIVKRR 91 (119)
Q Consensus 19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvG-VEr~-f~l-----~SP~I~~IeVl~~ 91 (119)
++.+++||+|.+..... |-. -+-.|++|...+ ...+|+.|..-| |--. .|+ ..|....|-|+|-
T Consensus 169 l~~l~~GDiI~i~t~~~-GLD---VsHvGi~i~~~~-----~l~f~hASs~~~kVv~s~~~l~~Y~~~~~~~~GI~V~R~ 239 (249)
T 2p1g_A 169 LPWIKNGDIIALTTNTP-GLD---VSHMGIAIYIKG-----QLHLLHASSKEGKVVVGKTALSQMLKDRKSLTGIRVLRM 239 (249)
T ss_dssp CTTSCTTCEEEEEECST-TCS---EEEEEEEEEETT-----EEEEEEEETTTTEEEECSSCHHHHHHTCTTEEEEEEEEC
T ss_pred HhcCCCCCEEEEEeCCC-CCc---eeEEEEEEEECC-----eEEEEEcCCCCCeEEECCcCHHHHHhcCCCCccEEEEee
Confidence 47899999999987542 311 367899998742 688999988764 3221 122 3477778888864
No 118
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=23.61 E-value=38 Score=19.09 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=10.8
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (57)
T 1cka_A 19 PFKKGDILRIRDK 31 (57)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 4999999999754
No 119
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=23.37 E-value=88 Score=26.07 Aligned_cols=58 Identities=26% Similarity=0.456 Sum_probs=36.1
Q ss_pred CCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecC--eeEEEEEeecCCccceEEEEEecc
Q psy3772 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYN--EGIERTFQLYSPIISSIIVKRRGD 93 (119)
Q Consensus 20 P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~g--vGVEr~f~l~SP~I~~IeVl~~~k 93 (119)
-.+.+||.|+|.. ++ +.|+|++|-....+ +..+.+=|+-+| +|+.. -.++ |+++.++.
T Consensus 14 ~~~~~gd~~~~~~---~~-----~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~------~~~~-~~~~~~~~ 73 (435)
T 2d6f_A 14 ASIDVGDMVLVEK---PD-----VTYEGMVLDRADDA-DDRHIVLKLENGYNIGVEI------SDAR-IELLEKGS 73 (435)
T ss_dssp TTCCTTCEEEEEC---SS-----CEEEEEECCCCTTS-CSSEEEEECTTSCEEEEEC------TTCC-CCEEECCC
T ss_pred cCCCCCCEEEEEE---CC-----eEEEEEEecCcccC-CCCeEEEEccCceeeeecc------cccE-EEEeccCC
Confidence 3578999999875 22 69999999654433 334444466654 66652 1233 66666654
No 120
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=23.23 E-value=41 Score=19.25 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=11.2
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|+.||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (61)
T 1y0m_A 21 TFTKSAIIQNVEK 33 (61)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCcCCCEEEEEEe
Confidence 5999999999765
No 121
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=23.15 E-value=39 Score=19.04 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 20 s~~~Gd~i~v~~~ 32 (58)
T 1sem_A 20 AFKRGDVITLINK 32 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 5999999999765
No 122
>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X
Probab=22.90 E-value=23 Score=26.89 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=53.3
Q ss_pred CCCCEEEEEEEEecCCccccceEEEEEEEEe-cCCCceeE-EEEEeecCeeEEEEEe---------ecCCccceEEEEEe
Q psy3772 23 VTGDTIIVNLNVIEGTRKRIQAYEGIVISRR-NKGLNSNF-IVRKISYNEGIERTFQ---------LYSPIISSIIVKRR 91 (119)
Q Consensus 23 ~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r-~~g~~~tf-tlR~i~~gvGVEr~f~---------l~SP~I~~IeVl~~ 91 (119)
..|.||.+.- |.|.+..++..| ||.+.=. ++|..--. -.|-+...-.||+.|. -+|=.|.+|+.+..
T Consensus 68 s~GeIv~~~~-i~Ek~p~~VKNf-GIwlrYdSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~ 145 (189)
T 4a18_X 68 SQGRILSVNE-IYEKSLNTVKTY-GIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEP 145 (189)
T ss_dssp TTEEEEEEEE-ECCSCTTSCEEE-EEEEEEECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCG
T ss_pred ccceEEEEEE-EccCCCceeEEe-eEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECH
Confidence 4799999985 678888999999 9888755 45643222 3777777777888873 36666777777766
Q ss_pred ccccccce
Q psy3772 92 GDVRRAKL 99 (119)
Q Consensus 92 ~kvrRakL 99 (119)
++++|..+
T Consensus 146 ~~~rrp~v 153 (189)
T 4a18_X 146 KDIKRPAT 153 (189)
T ss_dssp GGCCCHHH
T ss_pred HHccCHHH
Confidence 77766543
No 123
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=22.87 E-value=47 Score=18.74 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=10.4
Q ss_pred CCCCCCEEEEEE
Q psy3772 21 DFVTGDTIIVNL 32 (119)
Q Consensus 21 ~f~~GD~v~V~~ 32 (119)
.|..||+|.|.-
T Consensus 20 s~~~Gd~i~v~~ 31 (60)
T 2v1q_A 20 TIKSGDKVYILD 31 (60)
T ss_dssp CBCTTCEEEEEE
T ss_pred cCCCCCEEEEEe
Confidence 499999999975
No 124
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=22.81 E-value=51 Score=19.64 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.8
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 21 sf~~Gd~i~v~~~~ 34 (68)
T 2ew3_A 21 GFKEGDIITLTNQI 34 (68)
T ss_dssp CBCTTCEEEEEEES
T ss_pred CCCCCCEEEEEEec
Confidence 59999999998754
No 125
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=22.78 E-value=47 Score=18.76 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 21 YFEEGDIIYITDM 33 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred cCCCCCEEEEEEe
Confidence 4999999999764
No 126
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=22.41 E-value=38 Score=24.86 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=10.6
Q ss_pred CCCCCCCEEEEE
Q psy3772 20 PDFVTGDTIIVN 31 (119)
Q Consensus 20 P~f~~GD~v~V~ 31 (119)
-+++.||+|+|.
T Consensus 62 LeLRiGD~VKVd 73 (153)
T 2fhd_A 62 FFLKKGDVVQST 73 (153)
T ss_dssp SCCCTTCEEEET
T ss_pred eeeecCCEEEEC
Confidence 479999999997
No 127
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=22.39 E-value=42 Score=22.46 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=12.0
Q ss_pred CCCCCCCCCCEEEEE
Q psy3772 17 KNIPDFVTGDTIIVN 31 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~ 31 (119)
...|+.+|||.|.+.
T Consensus 3 ~~~~ep~pGDlI~~~ 17 (125)
T 2lkt_A 3 SPHQEPKPGDLIEIF 17 (125)
T ss_dssp SSSCCCCTTCEEEEE
T ss_pred CCCCCCCCCCEEEEe
Confidence 456789999999873
No 128
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=22.39 E-value=59 Score=18.45 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=10.8
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (64)
T 4f14_A 24 SFRDGDYIVNVQP 36 (64)
T ss_dssp CBCTTCEEEEEEE
T ss_pred CCCCCCEEEEEEe
Confidence 5999999998654
No 129
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=22.31 E-value=43 Score=18.96 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=10.1
Q ss_pred CCCCCCEEEEEE
Q psy3772 21 DFVTGDTIIVNL 32 (119)
Q Consensus 21 ~f~~GD~v~V~~ 32 (119)
.|+.||+|.|.-
T Consensus 21 s~~~Gd~i~v~~ 32 (60)
T 2x3w_D 21 SFKAGDELTKLG 32 (60)
T ss_dssp CBCTTCEEEECS
T ss_pred cCCCCCEEEEEE
Confidence 499999999854
No 130
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=22.11 E-value=79 Score=19.23 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=12.2
Q ss_pred CCCCCCEEEEEEEEe
Q psy3772 21 DFVTGDTIIVNLNVI 35 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (119)
.|+.||+|.|.-...
T Consensus 35 sf~~Gd~i~Vl~~~~ 49 (72)
T 2l0a_A 35 TFKAGEIITVLDDSD 49 (72)
T ss_dssp CBCTTCEEEEEEEEE
T ss_pred CCCCCCEEEEEEecC
Confidence 499999999987543
No 131
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=22.03 E-value=40 Score=21.52 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=21.0
Q ss_pred CCCCCCEEEEEEEEecCCccccceEEEEEEEEecC
Q psy3772 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~ 55 (119)
.|++||-|+|- .| +-+--.|+|+++.+.
T Consensus 17 ~F~~GDHVkVi----~G---~~~getGlVV~v~~d 44 (69)
T 2do3_A 17 YFKMGDHVKVI----AG---RFEGDTGLIVRVEEN 44 (69)
T ss_dssp SCCTTCEEEES----SS---TTTTCEEEEEEECSS
T ss_pred eccCCCeEEEe----cc---EEcCceEEEEEEeCC
Confidence 39999998884 35 345668999999853
No 132
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.01 E-value=59 Score=19.63 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=11.7
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 25 s~~~Gd~i~v~~~~ 38 (80)
T 1ue9_A 25 SLAPGQLILILKKN 38 (80)
T ss_dssp CCCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 49999999998754
No 133
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=21.99 E-value=19 Score=24.79 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=22.2
Q ss_pred cCCCCC-----CCCCCEEEEEEEEecCCccccceEEEE
Q psy3772 16 KKNIPD-----FVTGDTIIVNLNVIEGTRKRIQAYEGI 48 (119)
Q Consensus 16 ~~~~P~-----f~~GD~v~V~~~i~eg~k~r~q~f~Gv 48 (119)
+-|+|. |.|||+-.|++---.| +.++.-|.|.
T Consensus 60 RLdIpAGTavRFEPG~~r~V~LV~~~G-~r~v~Gf~g~ 96 (101)
T 4ep8_B 60 RLNIPAGTAVRFEPGQKREVELVAFAG-HRAVFGFRGE 96 (101)
T ss_dssp EECSSTTCEEEECTTCEEEEEEEECCT-TCEECSTTSS
T ss_pred eecccCCCeEeeCCCCeEEEEEEEccC-ceEEEcCCcc
Confidence 468886 9999999999865444 5555544443
No 134
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=21.98 E-value=44 Score=19.52 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.1
Q ss_pred CCCCCCEEEEEE
Q psy3772 21 DFVTGDTIIVNL 32 (119)
Q Consensus 21 ~f~~GD~v~V~~ 32 (119)
.|..||+|.|.-
T Consensus 25 s~~~Gd~i~v~~ 36 (67)
T 2kxc_A 25 SFAQGDVITLLI 36 (67)
T ss_dssp CBCTTCEEEESS
T ss_pred cCCCCCEEEEeE
Confidence 499999999854
No 135
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=21.96 E-value=1e+02 Score=22.82 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=31.9
Q ss_pred CCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCC-ceeEEEEEeecCeeEEEEEee
Q psy3772 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGL-NSNFIVRKISYNEGIERTFQL 78 (119)
Q Consensus 20 P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~-~~tftlR~i~~gvGVEr~f~l 78 (119)
-+|+.|.+|.+ +|.--++..|+ -.+-|+|- -....+||+..|--+|.+|+-
T Consensus 10 ~dlk~G~~I~~-----dg~p~~Vve~~---~~KpGKG~A~vr~klknl~TG~~~e~tf~s 61 (191)
T 3a5z_B 10 NDFRAGLKIML-----DGEPYAVEASE---FVKPGKGQAFARVKLRRLLTGTRVEKTFKS 61 (191)
T ss_dssp TTCCTTCEEEE-----TTEEEEEEEEE---EECCTTCCCEEEEEEEEGGGTEEEEEEEET
T ss_pred HHCCCCCEEEE-----CCEEEEEEEEE---EEcCCCCcEEEEEEEEECCCCCEEEEEECC
Confidence 38999988865 35332222222 12224432 234568999999999999975
No 136
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=21.95 E-value=88 Score=24.80 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=32.4
Q ss_pred CCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEE
Q psy3772 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr 74 (119)
...|-++.||.|.|.+.-. |- . =..+| .|..+.+.+..+.|||...|-=|.-
T Consensus 205 ~~p~lVkrGq~V~Iva~~g-G~--~-Ist~G--~ALenGa~Gd~IRVrNl~SgkiV~G 256 (278)
T 3frn_A 205 KDPPDVVKGQVVPAYVDMG-SI--K-VTTFV--EVLENGYLGETVRAMNVESRKYVFG 256 (278)
T ss_dssp ECCCSBCTTCEEEEEC-----------CEEE--EESSCBCTTCEEEEEC--CCCEEEE
T ss_pred CcceEEeCCCEEEEEEEeC-CE--E-EEEEE--EEcccCCCCCEEEEEECCCCCEEEE
Confidence 3556799999999988532 21 1 12233 6677888999999999877655543
No 137
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=21.93 E-value=58 Score=19.38 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=11.8
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|+.||+|.|.-..
T Consensus 31 s~~~Gd~i~v~~~~ 44 (73)
T 3c0c_A 31 GFREGDLITLTNQI 44 (73)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCcCCCEEEEEEec
Confidence 49999999998754
No 138
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=21.91 E-value=43 Score=20.24 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=11.8
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 29 s~~~Gd~i~v~~~~ 42 (73)
T 2ebp_A 29 KLKKGDIIDIISKP 42 (73)
T ss_dssp CBCSSCEEEEEECC
T ss_pred CCCCCCEEEEEEeC
Confidence 49999999998764
No 139
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=21.90 E-value=56 Score=19.13 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=11.5
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 21 s~~~Gd~i~v~~~~ 34 (69)
T 1ruw_A 21 PLKKGDIVFISRDE 34 (69)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEec
Confidence 49999999997653
No 140
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=21.79 E-value=50 Score=18.99 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.9
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (64)
T 2jte_A 24 TFREGEIIHLISK 36 (64)
T ss_dssp CBCTTCEEEEEES
T ss_pred CCCCCCEEEEEEC
Confidence 5999999999754
No 141
>4fxt_A Uncharacterized protein; PF12866 family, DUF3823, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.77A {Bacteroides ovatus}
Probab=21.78 E-value=2.6e+02 Score=20.97 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=37.8
Q ss_pred CCCEEEEEEEEecCCccccceEE--------EEEEEEecCCCceeEEEEEeecCeeEEEEEeecC
Q psy3772 24 TGDTIIVNLNVIEGTRKRIQAYE--------GIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS 80 (119)
Q Consensus 24 ~GD~v~V~~~i~eg~k~r~q~f~--------GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~S 80 (119)
|-|++.|++. |+ ..+.|+ =--+...+.-+..+|+|-++..|-.||.++...|
T Consensus 76 ~~dti~v~i~---G~--t~~dfeV~PY~~I~~~~~~~~g~~v~asf~v~~~~~~~~i~~v~l~~~ 135 (202)
T 4fxt_A 76 SNDTIYITVR---GN--TVQDIPVTPYFFVRNVSFAKNGNKITARFTINKVVANANMENVGIYLG 135 (202)
T ss_dssp SSCEEEEEES---SS--EECCEECCBSEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEEE
T ss_pred CCceEEEEEC---CC--eEEeEEEeeeEEEecceEEccCCEEEEEEEEEeccCCCCeeEEEEEEE
Confidence 8899999872 53 234454 2235556777899999999998888998887644
No 142
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=21.67 E-value=56 Score=18.74 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=11.3
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 19 TIRVGEIIRNVKK 31 (62)
T ss_dssp CBCTTCEEEEEEE
T ss_pred CCcCCCEEEEEEe
Confidence 5999999999865
No 143
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A {Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A 2dwn_A*
Probab=21.58 E-value=1.6e+02 Score=19.06 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=20.0
Q ss_pred CCCCCEEEEEEEEecCCccccce-EEEEEEEEec
Q psy3772 22 FVTGDTIIVNLNVIEGTRKRIQA-YEGIVISRRN 54 (119)
Q Consensus 22 f~~GD~v~V~~~i~eg~k~r~q~-f~GvvI~~r~ 54 (119)
+.+|+.|.|-+ |+ +. ..|+|++...
T Consensus 26 ~~~G~rV~VPf----g~----r~~~~G~V~~~~~ 51 (105)
T 2d7e_A 26 VKAGCRVRVPF----GK----QQERIGIVVSVSD 51 (105)
T ss_dssp CCTTCEEEEEE----TT----TEEEEEEEEEEES
T ss_pred CCCCcEEEEeC----CC----ccEEEEEEEEeec
Confidence 78999999987 54 34 6899999864
No 144
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=21.57 E-value=44 Score=18.78 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=10.9
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (58)
T 2drm_A 21 TFKEGDTIIVHQK 33 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 5999999998764
No 145
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=21.41 E-value=56 Score=19.14 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=12.2
Q ss_pred CCCCCCEEEEEEEEe
Q psy3772 21 DFVTGDTIIVNLNVI 35 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (119)
.|+.||+|.|.-...
T Consensus 25 s~~~Gd~i~v~~~~~ 39 (70)
T 2ecz_A 25 SFRKGERITLLRQVD 39 (70)
T ss_dssp CCCTTCBCEEEEEEE
T ss_pred CCCCCCEEEEEEecC
Confidence 599999999987643
No 146
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=21.32 E-value=50 Score=19.90 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=11.1
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 36 sf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 36 RLNPGDIVELTKA 48 (78)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 4999999999765
No 147
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=21.21 E-value=1.1e+02 Score=22.38 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=16.5
Q ss_pred ccceEEEEEEEEecCCCceeEEEE
Q psy3772 41 RIQAYEGIVISRRNKGLNSNFIVR 64 (119)
Q Consensus 41 r~q~f~GvvI~~r~~g~~~tftlR 64 (119)
|-+.+.|+|++-+ ++.|++|+
T Consensus 67 Rgr~l~G~VVS~K---MdKTIvV~ 87 (156)
T 3u5c_L 67 RGKILTGTVVSTK---MHRTIVIR 87 (156)
T ss_dssp EEEEEEEEEEECC---STTEEEEE
T ss_pred eeEEEEEEEEeec---CCCeEEEE
Confidence 4468999999864 67888875
No 148
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=21.17 E-value=49 Score=18.60 Aligned_cols=13 Identities=46% Similarity=0.432 Sum_probs=11.0
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 20 s~~~Gd~i~v~~~ 32 (58)
T 2vwf_A 20 GFRRGDFIHVMDN 32 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 4999999999764
No 149
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=21.10 E-value=48 Score=19.06 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.9
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|+.||+|.|.-.
T Consensus 23 s~~~Gd~i~v~~~ 35 (62)
T 1uj0_A 23 TFKHGELITVLDD 35 (62)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 4999999999764
No 150
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=21.04 E-value=54 Score=18.59 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=11.4
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 21 s~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 21 PFRKGDVITILKKS 34 (60)
T ss_dssp CBCTTCEEEEEECC
T ss_pred eEcCCCEEEEEEeC
Confidence 49999999997653
No 151
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=21.00 E-value=48 Score=18.89 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=10.1
Q ss_pred CCCCCCEEEEEE
Q psy3772 21 DFVTGDTIIVNL 32 (119)
Q Consensus 21 ~f~~GD~v~V~~ 32 (119)
.|..||+|.|.-
T Consensus 19 s~~~Gd~i~v~~ 30 (60)
T 1i07_A 19 SVMKDDVLEILD 30 (60)
T ss_dssp CBCTTCEEEECG
T ss_pred cCCCCCEEEEEE
Confidence 499999999864
No 152
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=20.87 E-value=1.4e+02 Score=20.67 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=12.5
Q ss_pred CCCCCCEEEEEEEEe
Q psy3772 21 DFVTGDTIIVNLNVI 35 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (119)
...|||+|.+...+.
T Consensus 108 PV~~GD~L~a~a~v~ 122 (157)
T 2f3x_A 108 QVKQGERVVAKAKVT 122 (157)
T ss_dssp CCBTTCEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEE
Confidence 367999999998886
No 153
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=20.81 E-value=54 Score=18.85 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.5
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 25 s~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 25 SFKKGEKMKVLEEH 38 (65)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEcC
Confidence 49999999997653
No 154
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=20.78 E-value=90 Score=22.88 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=16.0
Q ss_pred ccccceEEEEEEEEecCCCceeEEEE
Q psy3772 39 RKRIQAYEGIVISRRNKGLNSNFIVR 64 (119)
Q Consensus 39 k~r~q~f~GvvI~~r~~g~~~tftlR 64 (119)
.-|-+.++|+|++-+ .+.|++|+
T Consensus 67 svRGr~l~G~VVS~K---MdKTIvV~ 89 (158)
T 2zkq_q 67 SIRGRILSGVVTKMK---MQRTIVIR 89 (158)
T ss_dssp ----CEEEEEEEECS---SSCEEEEE
T ss_pred ceeeEEEEEEEEEcc---CCccEEEE
Confidence 344579999999954 68899987
No 155
>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S
Probab=20.73 E-value=25 Score=26.27 Aligned_cols=75 Identities=19% Similarity=0.389 Sum_probs=52.2
Q ss_pred CCCCEEEEEEEEecCCccccceEEEEEEEEe-cCCCceeE-EEEEeecCeeEEEEEe---------ecCCccceEEEE-E
Q psy3772 23 VTGDTIIVNLNVIEGTRKRIQAYEGIVISRR-NKGLNSNF-IVRKISYNEGIERTFQ---------LYSPIISSIIVK-R 90 (119)
Q Consensus 23 ~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r-~~g~~~tf-tlR~i~~gvGVEr~f~---------l~SP~I~~IeVl-~ 90 (119)
..|.||.+.- |.|.+..++..| ||.+.=. ++|..--. -.|-+...-.||+.|. -+|=.|.+|+.+ .
T Consensus 54 s~GeIv~~~~-i~Ek~p~~VKNf-GIwlrYdSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~ 131 (172)
T 3u5e_S 54 ASGEIVSINQ-INEAHPTKVKNF-GVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEK 131 (172)
T ss_dssp GGCCEEEEEE-CCCSSTTSCEEE-EEEEEEECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCS
T ss_pred ccceEEEEEE-EccCCCceeEEe-eEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcc
Confidence 4799999985 778888999999 8888755 45643222 3677777777888773 355566667666 5
Q ss_pred eccccccce
Q psy3772 91 RGDVRRAKL 99 (119)
Q Consensus 91 ~~kvrRakL 99 (119)
.++.+|..+
T Consensus 132 ~~~~rrp~v 140 (172)
T 3u5e_S 132 TADVKRQYV 140 (172)
T ss_dssp TTSCCCHHH
T ss_pred hhcCCChhh
Confidence 566666543
No 156
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.68 E-value=1.6e+02 Score=18.19 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=28.0
Q ss_pred CCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEE
Q psy3772 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVR 64 (119)
Q Consensus 20 P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR 64 (119)
|.|.+|+-|.++.. .| .-|=|.|+++...+ .+++|+
T Consensus 2 ~~f~~GedVLarws--DG-----~fYlGtI~~V~~~~--~~clV~ 37 (58)
T 4hcz_A 2 PRLWEGQDVLARWT--DG-----LLYLGTIKKVDSAR--EVCLVQ 37 (58)
T ss_dssp CSCCTTCEEEEECT--TS-----CEEEEEEEEEETTT--TEEEEE
T ss_pred CccccCCEEEEEec--CC-----CEEeEEEEEEecCC--CEEEEE
Confidence 78999999999875 46 58999999987653 356654
No 157
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=20.55 E-value=47 Score=19.11 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=10.8
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|..||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (64)
T 2ak5_A 24 SFSKGDVIHVTRV 36 (64)
T ss_dssp CBCTTCEEEEEEC
T ss_pred cCCCCCEEEEeEe
Confidence 4999999998754
No 158
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=20.54 E-value=50 Score=19.22 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.6
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|+.||+|.|.-..
T Consensus 7 s~~~Gd~i~v~~~~ 20 (63)
T 1tuc_A 7 TMKKGDILTLLNST 20 (63)
T ss_dssp CBCTTCEEEEEECC
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997653
No 159
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=20.54 E-value=1.7e+02 Score=20.36 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCCCCEEEEEEEE--ecCCccccceEEEEEEEEe
Q psy3772 22 FVTGDTIIVNLNV--IEGTRKRIQAYEGIVISRR 53 (119)
Q Consensus 22 f~~GD~v~V~~~i--~eg~k~r~q~f~GvvI~~r 53 (119)
-..||+|.|.++- +++.=++-+.+.++|+..+
T Consensus 33 a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtk 66 (122)
T 1whi_A 33 ANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTK 66 (122)
T ss_dssp BCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECS
T ss_pred cccCeEEEEEEEEecCCCccccccEEEEEEEEec
Confidence 6789999999984 3332234589999999876
No 160
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=20.44 E-value=56 Score=18.70 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=10.8
Q ss_pred CCCCCCEEEEEEE
Q psy3772 21 DFVTGDTIIVNLN 33 (119)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (119)
.|+.||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (62)
T 2iim_A 24 GFEKGEQLRILEQ 36 (62)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 4999999999753
No 161
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=20.32 E-value=66 Score=18.74 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.6
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 31 s~~~Gd~i~v~~~~ 44 (72)
T 4glm_A 31 DFEVGDKIRILATL 44 (72)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEcc
Confidence 59999999997654
No 162
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=20.31 E-value=76 Score=26.33 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.9
Q ss_pred CCCCCCCCCCEEEEEEEEec
Q psy3772 17 KNIPDFVTGDTIIVNLNVIE 36 (119)
Q Consensus 17 ~~~P~f~~GD~v~V~~~i~e 36 (119)
-.+|++++||+|...+.+..
T Consensus 101 ~~~p~v~~G~iIey~Y~i~~ 120 (506)
T 3kd4_A 101 VVHTGLELGATIYLDYSIIT 120 (506)
T ss_dssp EECCSCCTTCEEEEEEEEEE
T ss_pred EEcCCCCCCcEEEEEEEEEe
Confidence 57999999999999998863
No 163
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=20.21 E-value=2.2e+02 Score=21.18 Aligned_cols=43 Identities=19% Similarity=0.059 Sum_probs=30.8
Q ss_pred CCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEe
Q psy3772 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKI 66 (119)
Q Consensus 18 ~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i 66 (119)
.-|-++-||.|.|.+... | =...---+|..+..++..+.||+-
T Consensus 137 ~~~lV~rG~~V~i~~~~~-g-----~~i~~~G~AL~~G~~Gd~IrVr~~ 179 (219)
T 3tee_A 137 QAWRVKAGQRVQVIANGE-G-----FSVNAEGQAMNNAAVAQNARVRMT 179 (219)
T ss_dssp ECCSBCTTCEEEEEEECS-S-----CEEEEEEEECSCBCTTSEEEEEET
T ss_pred cccEEcCCCEEEEEEecC-C-----EEEEEEEEEccccCCCCEEEEECC
Confidence 446799999999988631 2 123344477778889999999873
No 164
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=20.20 E-value=93 Score=21.76 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=13.2
Q ss_pred CCC-CCCCCEEEEEEEEe
Q psy3772 19 IPD-FVTGDTIIVNLNVI 35 (119)
Q Consensus 19 ~P~-f~~GD~v~V~~~i~ 35 (119)
+|+ +.+||||.|.=.|.
T Consensus 50 ~pd~v~~GDivTvsgri~ 67 (119)
T 2wkd_A 50 MPDFIQMGDTVTVSGRVQ 67 (119)
T ss_dssp CCTTCCTTCEEEEEEEEE
T ss_pred ccccccCCcEEEEeceee
Confidence 565 78999999966554
No 165
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe, spine, structural genomics; 1.8A {Mycobacterium tuberculosis} SCOP: d.38.1.4
Probab=20.19 E-value=75 Score=21.06 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=13.4
Q ss_pred CCCCCCEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNVIE 36 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (119)
.+.|||+|.++..+.+
T Consensus 99 PV~~Gd~l~~~~~v~~ 114 (151)
T 2c2i_A 99 PVPVGSRVRATSSLVG 114 (151)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred CcCCCCEEEEEEEEEE
Confidence 3789999999998864
No 166
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.17 E-value=61 Score=20.14 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.8
Q ss_pred CCCCCCEEEEEEEE
Q psy3772 21 DFVTGDTIIVNLNV 34 (119)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (119)
.|..||+|.|.-..
T Consensus 36 sf~~Gd~i~v~~~~ 49 (88)
T 2dbk_A 36 ALEVGDIVKVTRMN 49 (88)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEec
Confidence 49999999998764
No 167
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=20.10 E-value=83 Score=21.31 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=12.7
Q ss_pred CCCCCCEEEEEEEEec
Q psy3772 21 DFVTGDTIIVNLNVIE 36 (119)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (119)
.|++||.|.|.+.-..
T Consensus 51 ~~~vGd~V~vkV~~vd 66 (130)
T 2k4k_A 51 HLSVGDEVQVKVLAVD 66 (130)
T ss_dssp TCCTTCEEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEe
Confidence 3999999999886543
Done!