BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3773
(578 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0KD80|RIMM_CUPNH Ribosome maturation factor RimM OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=rimM PE=3 SV=1
Length = 222
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFS----------I 451
+ L+ +G + AYGI GWI + DD + +AR+ W P L + +
Sbjct: 41 EDLVEVGYIGAAYGIRGWIKVLPHADDASALLHARRWWLLAPPQAGLVAADASRAQPVCV 100
Query: 452 KILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVE 511
KI + H V+A G+ DRNLA L+G + I DFP D FYW +LI C V
Sbjct: 101 KIAQSREHSGTVVAQASGVADRNLAEALKGRRVWIRRADFPAP-EEDEFYWVDLIGCTVS 159
Query: 512 NIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKK 571
N G+LLG V+ +I N H IL ++ C K LIPF+ F+++VD K
Sbjct: 160 NEQGELLGEVSGLIDNGAHQIL-------QVACVLPDGKAGERLIPFVDAFLRSVDTAGK 212
Query: 572 KIIVDW 577
+I+VDW
Sbjct: 213 RIVVDW 218
>sp|B3R397|RIMM_CUPTR Ribosome maturation factor RimM OS=Cupriavidus taiwanensis (strain
R1 / LMG 19424) GN=rimM PE=3 SV=1
Length = 207
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFS----------I 451
+ L+ +G V AYGI GWI ++ DD + +AR+ W P L + +
Sbjct: 26 EDLVEVGYVGAAYGIRGWIKVQPHADDASALLHARRWWLLSPPQAGLVAADAARSQPVCV 85
Query: 452 KILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVE 511
KI + H V+A G+ DRNLA L+G + I DFP D FYW +LI C V
Sbjct: 86 KIAQSREHSGTVVAQAAGVADRNLAEALRGRRVWIRRADFPAP-DEDEFYWVDLIGCNVS 144
Query: 512 NIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKK 571
N G+LLG V+ +I N H IL ++ + K LIPF+ F++ VD K
Sbjct: 145 NEQGELLGEVSGLIDNGAHQIL-------QVAFVQPDGKAGERLIPFVDAFLREVDTAGK 197
Query: 572 KIIVDW 577
+I+VDW
Sbjct: 198 RIVVDW 203
>sp|Q46Y83|RIMM_CUPPJ Ribosome maturation factor RimM OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=rimM PE=3 SV=1
Length = 221
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 19/187 (10%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFS----------- 450
D L+ +G V AYGI GWI ++ +D + +AR+ W P L +
Sbjct: 39 DDLVEVGYVGAAYGIRGWIKVEPHANDASALLHARRWWLLTPPQAGLVATAEASRAQAVC 98
Query: 451 IKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIV 510
+++ + H V+A G++DRNLA L+G + I DFP + FYW +LI C V
Sbjct: 99 VRVAQSREHSGTVVAQATGVSDRNLAEALKGRRVWIRRADFPAP-EENEFYWVDLIGCAV 157
Query: 511 ENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIK 570
N G+LLG V+ +I N H IL++ + ++ L+PF+ F++ VD
Sbjct: 158 SNEQGELLGEVSGLIDNGAHQILQVAYALPDGKAGER-------LVPFVDAFLRTVDTAG 210
Query: 571 KKIIVDW 577
K+I+VDW
Sbjct: 211 KRIVVDW 217
>sp|B1YV58|RIMM_BURA4 Ribosome maturation factor RimM OS=Burkholderia ambifaria (strain
MC40-6) GN=rimM PE=3 SV=1
Length = 225
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 24/238 (10%)
Query: 349 LSATDSRNSRDGR-----FIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDH 403
+S DS N++ GR F+ + + +AS E + L W D
Sbjct: 1 MSGHDSGNAKRGRASFGAFVRKPVERDVVASAGEAAEQGSLEAVQAWP----------DD 50
Query: 404 LITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKILNKKNHG 460
+ +G V+ AYG+ GWI + D + AR+ W+ + +L S +IL K HG
Sbjct: 51 AVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARR-WWLERGGERL-SARILQSKTHG 108
Query: 461 NYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGT 520
+ V+A+ G++DR+ A L+G+ + + DFP+ L++D FYW +LI V N LGT
Sbjct: 109 DTVVAHAAGVSDRDAALALRGFRVFVRREDFPE-LAADEFYWVDLIGLEVVNEQSVALGT 167
Query: 521 VTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
V+ +I N VHSI+R+ + ++ LIPF+ +++K VD ++I+VDW+
Sbjct: 168 VSGMIDNGVHSIMRVEYPAVGKDGQPTTDER---LIPFVGVYVKTVDQAARRIVVDWE 222
>sp|Q0BH68|RIMM_BURCM Ribosome maturation factor RimM OS=Burkholderia ambifaria (strain
ATCC BAA-244 / AMMD) GN=rimM PE=3 SV=2
Length = 226
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 24/238 (10%)
Query: 349 LSATDSRNSRDGR-----FIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDH 403
+S DS N++ GR F+ + + +AS E + L W D
Sbjct: 1 MSGHDSGNAKRGRASFGAFVRKPVERDVVASAGEAAEQGSLEAVQAWP----------DD 50
Query: 404 LITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKILNKKNHG 460
+ +G V+ AYG+ GWI + D + AR+ W+ + +L S +IL K HG
Sbjct: 51 AVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARR-WWLERGGERL-SARILQSKTHG 108
Query: 461 NYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGT 520
+ V+A+ G++DR+ A L+G+ + + DFP L++D FYW +LI V N LGT
Sbjct: 109 DTVVAHAAGVSDRDAALALRGFRVFVRREDFPA-LAADEFYWVDLIGLEVVNEQSVALGT 167
Query: 521 VTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
V+ +I N VHSI+R+ + ++ LIPF+ +++K VD ++I+VDW+
Sbjct: 168 VSGMIDNGVHSIMRVEYPAVGKDGQPTTDER---LIPFVGVYVKTVDQAARRIVVDWE 222
>sp|Q1LQE1|RIMM_RALME Ribosome maturation factor RimM OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=rimM PE=3 SV=1
Length = 220
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 397 TSLTVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFF----------DPNSL 446
T D L+ +G V AYGI GWI ++ DD + +AR+ W S
Sbjct: 34 TDTLPDDLVEVGYVGAAYGIRGWIKVQPHADDASALLHARRWWLLRAPPAGVVSAPAQSA 93
Query: 447 KLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLI 506
+ SIKI + H V+A G++DR++A L+G + + DFP + FYW +LI
Sbjct: 94 EAVSIKISQSREHSGTVVAQPAGVSDRSVAEMLKGRRVWVRRADFPAAEEGE-FYWVDLI 152
Query: 507 DCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNV 566
C V N G+ LG VT +I N H IL++ + ++ K ++ LIPF+ F++ V
Sbjct: 153 GCAVVNEQGEALGEVTGLIDNGAHQILQV---AYELPDGKAAER----LIPFVDAFLRTV 205
Query: 567 DIIKKKIIVDW 577
D ++I+VDW
Sbjct: 206 DTPARRIVVDW 216
>sp|Q58690|FUMA_METJA Putative fumarate hydratase subunit alpha OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1294 PE=3 SV=1
Length = 285
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 137/259 (52%), Gaps = 20/259 (7%)
Query: 7 AKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGY 66
+K+ + I+ N+++ + + P+CQDTG+ VFLKIG N+ I + I EGV++
Sbjct: 38 SKNTLKAIIENNKIAEETQVPLCQDTGVPIVFLKIGKNINSSEIMKIIEE-IKEGVKKAT 96
Query: 67 TN-PNNILRASIVSDPHFIRKNTQDNT---PAVINMELVPGNFLDIKIAS--KGGGSENK 120
P LR ++V R+N + N IN+E +I+I + KG GSEN
Sbjct: 97 EEVP---LRPNVVH--PLTRENFKTNVGLNSPFINIEFDESLDREIEIIAFPKGAGSENM 151
Query: 121 TKFAMLNPSDSLV---DWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDIN 177
+ ML PSD + +++++T+ G CPP ++GIGIGGT + A+ +AKK L++ I
Sbjct: 152 SALKMLKPSDGIEGIKNFVLETIANAGGKPCPPIVVGIGIGGTADVALKLAKKALLRKIG 211
Query: 178 MNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAII 237
K +I L EL KINSLGIGA G+GG T LDV I + H AS PV I
Sbjct: 212 ERHRDK-----EIANLEKELLEKINSLGIGAMGLGGDITALDVFIEIAGCHTASLPVGIC 266
Query: 238 PNCAATRHGFLLFWISIKL 256
C A R + KL
Sbjct: 267 IQCWADRRAIKRIKLDAKL 285
>sp|A9ADT0|RIMM_BURM1 Ribosome maturation factor RimM OS=Burkholderia multivorans (strain
ATCC 17616 / 249) GN=rimM PE=3 SV=1
Length = 223
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + D + AR+ W + FS +I+ K
Sbjct: 47 DDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLSARRWWL--EKGTQRFSARIVQSKT 104
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A G+ DR+ A L+G+ + + DFP L++D FYW +LI V N L
Sbjct: 105 HGDTVVAQPAGVGDRDAALALRGFRVFVRREDFP-ALAADEFYWVDLIGLDVVNEQSATL 163
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G V +I N HSI+R+ S ++ LIPF+ +++K VD ++I+VDW+
Sbjct: 164 GKVVGMIDNGAHSIMRVEYPSVGKDGRPAAAER---LIPFVGVYVKTVDQAARRIVVDWE 220
>sp|Q39ID5|RIMM_BURS3 Ribosome maturation factor RimM OS=Burkholderia sp. (strain 383)
GN=rimM PE=3 SV=1
Length = 225
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 24/238 (10%)
Query: 349 LSATDSRNSRDGR-----FIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDH 403
++ DS N+R GR F+ + + +A+ + + L W D
Sbjct: 1 MAGHDSGNARRGRASFGAFVRKPVERDAVANAGQAAEQGSLEEAQAWP----------DD 50
Query: 404 LITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKILNKKNHG 460
+ +G V+ AYG+ GW+ + D + AR W + S++I+ K H
Sbjct: 51 AVEVGAVVDAYGLKGWVKVATHADAGRGGDALLKARHWWL--ERGAERLSVRIMQSKAHS 108
Query: 461 NYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGT 520
+ V+A G++DR+ A ++G+ + + DFP L++D FYW +LI V N LG
Sbjct: 109 DTVVAQPAGVSDRDAAFAMRGFRVFVRREDFP-ALAADEFYWVDLIGLDVVNEQSVALGK 167
Query: 521 VTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
V+ +I N VHSI+R+ +T ++ LIPF+ +++K VD ++I+VDW+
Sbjct: 168 VSGMIDNGVHSIMRVEYPATGKDGQPTTDER---LIPFVGVYVKTVDQAARRIVVDWE 222
>sp|A4JCJ8|RIMM_BURVG Ribosome maturation factor RimM OS=Burkholderia vietnamiensis
(strain G4 / LMG 22486) GN=rimM PE=3 SV=1
Length = 225
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GWI + D + AR+ W + S++IL K
Sbjct: 49 DDAVEVGAVVDAYGLKGWIKVAAHADAGRGGDALLSARRWWL--ERGAERLSVRILQSKT 106
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A G+ DR+ A ++G+ + + DFP L++D FYW +LI V N L
Sbjct: 107 HGDTVVAQPAGVDDRDAALAMRGFRVFVRREDFP-ALAADEFYWVDLIGLEVVNEQSVSL 165
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G V+ +I N VHSILR+ + ++ LIPF+ +++K VD ++I+VDW+
Sbjct: 166 GKVSGMIDNGVHSILRVEYPTVGKDGAPATDER---LIPFVGVYVKTVDQAARRIVVDWE 222
>sp|B1JXU4|RIMM_BURCC Ribosome maturation factor RimM OS=Burkholderia cenocepacia (strain
MC0-3) GN=rimM PE=3 SV=1
Length = 225
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 397 TSLTVDHLITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKI 453
T D + +G V+ AYG+ GW+ + D + AR+ W + S++I
Sbjct: 44 TQAWPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWL--ERGAERLSVRI 101
Query: 454 LNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENI 513
+ K H + V+A G++DR+ A ++G+ + + DFP L++D FYW +LI V N
Sbjct: 102 MQSKTHSDTVVAQPAGVSDRDAALSMRGFRVFVRREDFP-ALAADEFYWVDLIGLEVVNE 160
Query: 514 HGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKI 573
LG V+ +I N VHSI+R+ +T ++ LIPF+ +++K VD ++I
Sbjct: 161 QSVALGKVSGMIDNGVHSIMRVEYPATGKDGQPTTDER---LIPFVGVYVKTVDQAARRI 217
Query: 574 IVDWD 578
+VDW+
Sbjct: 218 VVDWE 222
>sp|A0K5P6|RIMM_BURCH Ribosome maturation factor RimM OS=Burkholderia cenocepacia (strain
HI2424) GN=rimM PE=3 SV=1
Length = 225
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 397 TSLTVDHLITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKI 453
T D + +G V+ AYG+ GW+ + D + AR+ W + S++I
Sbjct: 44 TQAWPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWL--ERGAERLSVRI 101
Query: 454 LNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENI 513
+ K H + V+A G++DR+ A ++G+ + + DFP L++D FYW +LI V N
Sbjct: 102 MQSKTHSDTVVAQPAGVSDRDAALSMRGFRVFVRREDFP-ALAADEFYWVDLIGLEVVNE 160
Query: 514 HGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKI 573
LG V+ +I N VHSI+R+ +T ++ LIPF+ +++K VD ++I
Sbjct: 161 QSVALGKVSGMIDNGVHSIMRVEYPATGKDGQPTTDER---LIPFVGVYVKTVDQAARRI 217
Query: 574 IVDWD 578
+VDW+
Sbjct: 218 VVDWE 222
>sp|Q13VE9|RIMM_BURXL Ribosome maturation factor RimM OS=Burkholderia xenovorans (strain
LB400) GN=rimM PE=3 SV=1
Length = 244
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 11/178 (6%)
Query: 405 ITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 461
+ +G ++ AYG+ GW+ + D + A++ W K S L K H +
Sbjct: 71 VEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERK--SAPSLQAKTHSD 128
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
V+A+L G+TDR++A L+G + IS ++FP L +D FYW +L+ V N+ G LG V
Sbjct: 129 SVVAHLGGVTDRDVALALRGSRVYISRSEFPAL-GADEFYWVDLLGLDVVNVAGVSLGKV 187
Query: 522 TEIIQNKVHSILRIIQSSTKIICTKKYKKKYGI-LIPFIKIFIKNVDIIKKKIIVDWD 578
++I N HS+LRI +T K K G LIPF+ +F+K VD K+I VDW+
Sbjct: 188 ADMIDNGAHSVLRIEYPATD----KSGKPVTGERLIPFVGVFVKTVDQAAKQITVDWE 241
>sp|Q1BY03|RIMM_BURCA Ribosome maturation factor RimM OS=Burkholderia cenocepacia (strain
AU 1054) GN=rimM PE=3 SV=1
Length = 225
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 397 TSLTVDHLITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKI 453
T D + +G V+ AYG+ GW+ + D + AR+ W + S++I
Sbjct: 44 TQAWPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWL--ERGAERLSVRI 101
Query: 454 LNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENI 513
+ K + V+A G++DR+ A ++G+ + + DFP L++D FYW +LI V N
Sbjct: 102 MQSKTRSDTVVAQPAGVSDRDAALSMRGFRVFVRREDFP-ALAADEFYWVDLIGLEVVNE 160
Query: 514 HGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKI 573
LG V+ +I N VHSI+R+ +T ++ LIPF+ +++K VD ++I
Sbjct: 161 QSVALGKVSGMIDNGVHSIMRVEYPATGKDGQPTTDER---LIPFVGVYVKTVDQAARRI 217
Query: 574 IVDWD 578
+VDW+
Sbjct: 218 VVDWE 222
>sp|B2T606|RIMM_BURPP Ribosome maturation factor RimM OS=Burkholderia phytofirmans
(strain DSM 17436 / PsJN) GN=rimM PE=3 SV=1
Length = 248
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 17/181 (9%)
Query: 405 ITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 461
+ +G ++ AYG+ GW+ + D + A++ W K S L K H +
Sbjct: 75 VEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLIKGQERK--SAPSLQAKMHSD 132
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
V+A+L G+TDR++A L+G + IS ++FP L +D FYW +L+ V N+ G LG V
Sbjct: 133 SVVAHLGGVTDRDVALALRGSRVYISRSEFP-ALGADEFYWVDLLGLDVVNVAGVNLGKV 191
Query: 522 TEIIQNKVHSILRI----IQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDW 577
++I N HS+LRI S K + ++ LIPF+ +F+K VD K+I VDW
Sbjct: 192 ADMIDNGAHSVLRIEYPDTDKSGKPVIGER-------LIPFVGVFVKTVDQAAKQITVDW 244
Query: 578 D 578
+
Sbjct: 245 E 245
>sp|B2JF30|RIMM_BURP8 Ribosome maturation factor RimM OS=Burkholderia phymatum (strain
DSM 17167 / STM815) GN=rimM PE=3 SV=1
Length = 231
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 15/183 (8%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKN--IFFYARKIWFFDPNSLKLFSIKILNKKNH 459
D + +G ++ AYG+ GW+ + D + + K W+ + + S L K H
Sbjct: 55 DDAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSTKRWWLEKGRERQ-STPCLQSKVH 113
Query: 460 GNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLG 519
G+ ++A L G DR+ A L+G+ + + DFP L +D +YW +L+ V N G LG
Sbjct: 114 GDSIVAQLGGTADRDAALALRGHRVYVRRRDFP-ALGTDEYYWVDLVGLDVVNEAGIELG 172
Query: 520 TVTEIIQNKVHSILRI----IQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIV 575
V ++I N S+LRI I K + ++ LIPF+ +++K VD KKIIV
Sbjct: 173 KVADLIDNGAQSVLRIEYPAIGKDGKPVIGER-------LIPFVGVYVKTVDQAAKKIIV 225
Query: 576 DWD 578
DW+
Sbjct: 226 DWE 228
>sp|A6SVI5|RIMM_JANMA Ribosome maturation factor RimM OS=Janthinobacterium sp. (strain
Marseille) GN=rimM PE=3 SV=1
Length = 179
Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 461
+ L+ +G + AYG+ GW+ ++ + D + A+ W P + ++++ K H
Sbjct: 5 EDLVLVGYISGAYGLNGWVRVRPYSADADALLTAKTWWLDKP---EFHDVEMMQSKIHTG 61
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
V+A L G+ R+ A L+G ++I + FP L S + FYW +LI VEN+ G+ LG V
Sbjct: 62 DVVAKLMGVAGRDAAEALKGATVQIPRSHFPAL-SDNEFYWVDLIGLEVENLQGEHLGQV 120
Query: 522 TEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDW 577
++++ N H ILR+ K + +LIPF++ F+ VD KKI VDW
Sbjct: 121 SDMMDNGAHPILRVAVPQAAETTDPKAAPQE-LLIPFVEQFVITVDRTAKKITVDW 175
>sp|A4G2T6|RIMM_HERAR Ribosome maturation factor RimM OS=Herminiimonas arsenicoxydans
GN=rimM PE=3 SV=1
Length = 177
Score = 103 bits (258), Expect = 3e-21, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 7/176 (3%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 461
+ L+ +G + AYG+ GW+ ++ + D + A+ W P + + ++ K H
Sbjct: 5 EDLVLVGYISGAYGLNGWVRVRPYSADADALLNAKTWWLDKP---EFRDVAMMQSKIHSG 61
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
V+A L G+ R+ A L+G ++I + FP L S + FYW +LI VEN+ G LG V
Sbjct: 62 DVVAQLMGVAGRDAAEALKGATVQIPRSHFPAL-SDNEFYWVDLIGLEVENLQGVRLGQV 120
Query: 522 TEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDW 577
++++ N H ILR+ T K ++ +LIPF++ F+ +D KKI VDW
Sbjct: 121 SDMMDNGAHPILRVAVPQTSEADPKAAQE---LLIPFVEQFVITIDQTAKKITVDW 173
>sp|Q2SY00|RIMM_BURTA Ribosome maturation factor RimM OS=Burkholderia thailandensis
(strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
GN=rimM PE=3 SV=1
Length = 229
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLD---DKNIFFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + + AR W K ++ K
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLVAHAGAGRGGDALLKARDWWLQKGGERKF--ARVTQAKL 110
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
H + V+A+ G DR+ A L+G+ + + DFP L++D FYW +LI V N G L
Sbjct: 111 HSDAVVAHPAGSVDRDTALALRGFRVFVRRGDFP-ALAADEFYWVDLIGLDVVNEAGVAL 169
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G V ++I N VHSI+R+ +T ++ LIPF+ +++K V+ +I+VDW+
Sbjct: 170 GKVADMIDNGVHSIMRVEYPATGKDGRPTTGER---LIPFVGVYVKAVEQAAGRIVVDWE 226
>sp|A3NXU2|RIMM_BURP0 Ribosome maturation factor RimM OS=Burkholderia pseudomallei
(strain 1106a) GN=rimM PE=3 SV=1
Length = 229
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNI---FFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + AR W+ + + F+ ++ K
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARD-WWLQKGAERKFA-RVTQAKL 110
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A+ G DR+ A L+G + + DFP L++D FYW +LI V N G L
Sbjct: 111 HGDTVVAHPGGSVDRDTALALRGARVFVRRGDFP-ALAADEFYWVDLIGLDVVNEAGVAL 169
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G + ++I N VHSI+R+ +T K ++ LIPF+ +++K V+ +++VDW+
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGER---LIPFVGVYVKAVEQAAGRVVVDWE 226
>sp|A2S4N9|RIMM_BURM9 Ribosome maturation factor RimM OS=Burkholderia mallei (strain NCTC
10229) GN=rimM PE=3 SV=1
Length = 230
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNI---FFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + AR W+ + + F+ ++ K
Sbjct: 54 DDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARD-WWLQKGAERKFA-RVTQAKL 111
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A+ G DR+ A L+G + + DFP L++D FYW +LI V N G L
Sbjct: 112 HGDTVVAHPDGSVDRDTALALRGARVFVRRGDFP-ALAADEFYWVDLIGLDVVNEAGVAL 170
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G + ++I N VHSI+R+ +T K ++ LIPF+ +++K V+ +++VDW+
Sbjct: 171 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGER---LIPFVGVYVKAVEQAAGRVVVDWE 227
>sp|A1V6J3|RIMM_BURMS Ribosome maturation factor RimM OS=Burkholderia mallei (strain
SAVP1) GN=rimM PE=3 SV=1
Length = 229
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNI---FFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + AR W+ + + F+ ++ K
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARD-WWLQKGAERKFA-RVTQAKL 110
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A+ G DR+ A L+G + + DFP L++D FYW +LI V N G L
Sbjct: 111 HGDTVVAHPDGSVDRDTALALRGARVFVRRGDFP-ALAADEFYWVDLIGLDVVNEAGVAL 169
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G + ++I N VHSI+R+ +T K ++ LIPF+ +++K V+ +++VDW+
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGER---LIPFVGVYVKAVEQAAGRVVVDWE 226
>sp|Q62M51|RIMM_BURMA Ribosome maturation factor RimM OS=Burkholderia mallei (strain ATCC
23344) GN=rimM PE=3 SV=2
Length = 229
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNI---FFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + AR W+ + + F+ ++ K
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARD-WWLQKGAERKFA-RVTQAKL 110
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A+ G DR+ A L+G + + DFP L++D FYW +LI V N G L
Sbjct: 111 HGDTVVAHPDGSVDRDTALALRGARVFVRRGDFP-ALAADEFYWVDLIGLDVVNEAGVAL 169
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G + ++I N VHSI+R+ +T K ++ LIPF+ +++K V+ +++VDW+
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGER---LIPFVGVYVKAVEQAAGRVVVDWE 226
>sp|A3MHR8|RIMM_BURM7 Ribosome maturation factor RimM OS=Burkholderia mallei (strain NCTC
10247) GN=rimM PE=3 SV=1
Length = 229
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNI---FFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + AR W+ + + F+ ++ K
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARD-WWLQKGAERKFA-RVTQAKL 110
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A+ G DR+ A L+G + + DFP L++D FYW +LI V N G L
Sbjct: 111 HGDTVVAHPDGSVDRDTALALRGARVFVRRGDFP-ALAADEFYWVDLIGLDVVNEAGVAL 169
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G + ++I N VHSI+R+ +T K ++ LIPF+ +++K V+ +++VDW+
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGER---LIPFVGVYVKAVEQAAGRVVVDWE 226
>sp|Q63S31|RIMM_BURPS Ribosome maturation factor RimM OS=Burkholderia pseudomallei
(strain K96243) GN=rimM PE=3 SV=2
Length = 229
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNI---FFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + AR W+ + + F+ ++ K
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARD-WWLQKGAERKFA-RVTQAKL 110
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A+ G DR+ A L+G + + DFP L++D FYW +LI V N G L
Sbjct: 111 HGDTVVAHPDGSVDRDTALALRGARVFVRRGDFP-ALAADEFYWVDLIGLDVVNEAGVAL 169
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G + ++I N VHSI+R+ +T K ++ LIPF+ +++K V+ +++VDW+
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGER---LIPFVGVYVKAVEQAAGRVVVDWE 226
>sp|Q3JQ07|RIMM_BURP1 Ribosome maturation factor RimM OS=Burkholderia pseudomallei
(strain 1710b) GN=rimM PE=3 SV=1
Length = 229
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNI---FFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + AR W+ + + F+ ++ K
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARD-WWLQKGAERKFA-RVTQAKL 110
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A+ G DR+ A L+G + + DFP L++D FYW +LI V N G L
Sbjct: 111 HGDTVVAHPDGSVDRDTALALRGARVFVRRGDFP-ALAADEFYWVDLIGLDVVNEAGVAL 169
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G + ++I N VHSI+R+ +T K ++ LIPF+ +++K V+ +++VDW+
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGER---LIPFVGVYVKAVEQAAGRVVVDWE 226
>sp|A3NC06|RIMM_BURP6 Ribosome maturation factor RimM OS=Burkholderia pseudomallei
(strain 668) GN=rimM PE=3 SV=1
Length = 229
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNI---FFYARKIWFFDPNSLKLFSIKILNKKN 458
D + +G V+ AYG+ GW+ + AR W+ + + F+ ++ K
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARD-WWLQKGAERKFA-RVTQAKL 110
Query: 459 HGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLL 518
HG+ V+A+ G DR+ A L+G + + DFP L++D FYW +LI V N G L
Sbjct: 111 HGDTVVAHPDGSVDRDTALALRGARVFVRRGDFP-ALAADEFYWVDLIGLDVVNEAGVAL 169
Query: 519 GTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
G + ++I N VHSI+R+ +T K ++ LIPF+ +++K V+ +++VDW+
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGER---LIPFVGVYVKAVEQAAGRVVVDWE 226
>sp|A1VM98|RIMM_POLNA Ribosome maturation factor RimM OS=Polaromonas naphthalenivorans
(strain CJ2) GN=rimM PE=3 SV=1
Length = 202
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 15/196 (7%)
Query: 392 QVGAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLK---- 447
+G +S D + +G +L A+G+ GW+ I D F A K W+ +K
Sbjct: 8 SLGLTSSSLPDDALEVGRILDAWGVKGWVKILPHSTDPEALFSA-KTWYLQTPDVKFRPG 66
Query: 448 --LFS----IKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFY 501
LFS +K+ K H V+A G+ DR+ A L+G + +S + FP S+D +Y
Sbjct: 67 FSLFSGTVSLKVDEAKIHSGAVVAKFSGLDDRDAAEALRGARIFLSRSSFPAA-SADEYY 125
Query: 502 WFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKI 561
W +LI V N G LG V +++ HS+L + +ST+ T ++ +IPF+
Sbjct: 126 WVDLIGLNVLNREGVALGCVRDLMATGPHSVLCVEYASTQEDGTSATAER---MIPFVAA 182
Query: 562 FIKNVDIIKKKIIVDW 577
++ VDI K I VDW
Sbjct: 183 YVDKVDIAGKCITVDW 198
>sp|Q7VXD7|RIMM_BORPE Ribosome maturation factor RimM OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=rimM PE=3 SV=1
Length = 207
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 18/191 (9%)
Query: 404 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSI--------KILN 455
L+ +G + AYG+ GW+ ++ + W P + ++L
Sbjct: 14 LVELGRIASAYGVKGWVKVQPHSAQAEVLRTVSHWWLTRPAPQAARDVVASVPRAYQVLQ 73
Query: 456 KKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIV---EN 512
+ HG V+A L GI DR+ A L+G +++ + + FP + D +YW +LI C + +
Sbjct: 74 ARVHGGAVVAQLAGIDDRDQAEALRGCFVQAARSAFPA-PADDEYYWVDLIGCALYSDAD 132
Query: 513 IHGKLLGTVTEIIQNKVHSILRIIQSSTK------IICTKKYKKKYGILIPFIKIFIKNV 566
+LLG V E+ N H++L++++ + + + L+PF++ I++V
Sbjct: 133 GEPRLLGVVDEVFDNGAHAVLKVLRQQIQPGQPGPVPLLDPKGRPLEELVPFVRAHIRHV 192
Query: 567 DIIKKKIIVDW 577
D+ ++I DW
Sbjct: 193 DLAARRIDSDW 203
>sp|Q7W6N7|RIMM_BORPA Ribosome maturation factor RimM OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=rimM PE=3 SV=1
Length = 207
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 18/191 (9%)
Query: 404 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSI--------KILN 455
L+ +G + AYG+ GW+ ++ + W P + ++L
Sbjct: 14 LVELGRIASAYGVKGWVKVQPHSAQAEVLRTVSHWWLTRPAPQAARGVVASVPRAYQVLQ 73
Query: 456 KKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIV---EN 512
+ HG V+A L GI DR+ A L+G ++ + + FP + D +YW +LI C + +
Sbjct: 74 ARVHGGAVVAQLAGIDDRDQAEALRGCLVQAARSAFPA-PADDEYYWVDLIGCALYSDAD 132
Query: 513 IHGKLLGTVTEIIQNKVHSILRIIQSSTK------IICTKKYKKKYGILIPFIKIFIKNV 566
+LLG V E+ N H++L++++ + + + L+PF++ I++V
Sbjct: 133 GESRLLGVVDEVFDNGAHAVLKVLRQQLQPGQPGPVPLVDPKGRPLEELVPFVRAHIRHV 192
Query: 567 DIIKKKIIVDW 577
D+ ++I DW
Sbjct: 193 DLAARRIDSDW 203
>sp|Q7WHM0|RIMM_BORBR Ribosome maturation factor RimM OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) GN=rimM PE=3
SV=1
Length = 207
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 18/191 (9%)
Query: 404 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSI--------KILN 455
L+ +G + AYG+ GW+ ++ + W P + ++L
Sbjct: 14 LVELGRIASAYGVKGWVKVQPHSAQAEVLRTVSHWWLTRPAPQAARGVVASVPRAYQVLQ 73
Query: 456 KKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIV---EN 512
+ HG V+A L GI DR+ A L+G ++ + + FP + D +YW +LI C + +
Sbjct: 74 ARVHGGAVVAQLAGIDDRDQAEALRGCLVQAARSAFPA-PADDEYYWVDLIGCALYSDAD 132
Query: 513 IHGKLLGTVTEIIQNKVHSILRIIQSSTK------IICTKKYKKKYGILIPFIKIFIKNV 566
+LLG V E+ N H++L++++ + + + L+PF++ I++V
Sbjct: 133 GESRLLGVVDEVFDNGAHAVLKVLRQQLQPGQPGPVPLVDPKGRPLEELVPFVRAHIRHV 192
Query: 567 DIIKKKIIVDW 577
D+ ++I DW
Sbjct: 193 DLAARRIDSDW 203
>sp|A2SES7|RIMM_METPP Ribosome maturation factor RimM OS=Methylibium petroleiphilum
(strain PM1) GN=rimM PE=3 SV=1
Length = 193
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFS---------IK 452
+ I +G ++ A+GI G I + F D F +R+ WF P + ++
Sbjct: 10 EDAIEVGRIVDAWGIKGGIKVLPFSSDPQALFSSRR-WFLRPPEKPMGPKAAKPLPTLLR 68
Query: 453 ILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVEN 512
I N + G+ ++A + DRN A L+G + +S FP D +YW +LI V N
Sbjct: 69 ITNAREQGDVIVATAQDVADRNAAEALRGCSVFVSRASFPTA-DVDEYYWIDLIGLAVVN 127
Query: 513 IHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKK 572
G+ LG V +++ HS+LR+ Q T +++ LIPF+ +I V + ++
Sbjct: 128 REGQALGNVADLLDTGAHSVLRVTQVETDDQGRSLERER---LIPFVAAYIDAVSLEQRC 184
Query: 573 IIVDW 577
I VDW
Sbjct: 185 ITVDW 189
>sp|Q12CW5|RIMM_POLSJ Ribosome maturation factor RimM OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=rimM PE=3 SV=2
Length = 202
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 15/195 (7%)
Query: 393 VGAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKL---- 448
G S D I +G +L A+G+ GW+ I D F A K WF K
Sbjct: 9 AGLTPSSLPDDAIEVGRILDAWGVKGWVKILPHSTDPEALFSA-KSWFLQAPEAKFRPGF 67
Query: 449 --FSIKIL----NKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYW 502
FS +L K H + V+A G DRN A L+G + + + FP + S D +YW
Sbjct: 68 NAFSGTVLLSVDEAKTHSDTVVAKFSGQDDRNAAEALRGARIFLPRSSFP-VASKDEYYW 126
Query: 503 FNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIF 562
+LI V N G LG V +++ HS+L + ++ + T ++ +IPF+ +
Sbjct: 127 VDLIGLNVVNREGVPLGQVRDLMTTGPHSVLCVEYTAQQEDGTAVTAER---MIPFVSAY 183
Query: 563 IKNVDIIKKKIIVDW 577
I VDI K I VDW
Sbjct: 184 IDTVDIAGKCITVDW 198
>sp|P14407|FUMB_ECOLI Fumarate hydratase class I, anaerobic OS=Escherichia coli (strain
K12) GN=fumB PE=1 SV=2
Length = 548
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 14/240 (5%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + +++GV Y +N+
Sbjct: 89 QFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGD---EETLSKGVYNTYIE-DNL 144
Query: 73 LRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AMLN 127
+ + + NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 145 RYSQNAALDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLT 204
Query: 128 PSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQ---DINMNSIIKN 184
P L +++++ + T+G CPP + IGGT + L K+ D ++
Sbjct: 205 PG-KLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNEH 263
Query: 185 GPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATR 244
G + +L EL + LG+GAQ GG D++++ P H AS PV + +C+A R
Sbjct: 264 GQAFRDVQLEQELLEEAQKLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADR 322
>sp|Q8Y0V9|RIMM_RALSO Ribosome maturation factor RimM OS=Ralstonia solanacearum (strain
GMI1000) GN=rimM PE=3 SV=1
Length = 184
Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 21/190 (11%)
Query: 394 GAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPN------SLK 447
GA SL D L+ +G V AYG+ GWI ++ D + + + W+ P S
Sbjct: 6 GANPSLP-DDLVEVGYVGGAYGVRGWIKVQPHGDAEALLHAS--TWWLKPAAGAPAVSSD 62
Query: 448 LFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLID 507
+ + + H V+A + DRN+A L+G + + +FP + D FYW +LI
Sbjct: 63 WRVLPVGTSREHSGSVVAGSPAVPDRNVAEALRGCTVWVRRAEFPAP-ADDEFYWVDLIG 121
Query: 508 CIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVD 567
V N + LGTV +I N H ILRI+ T++ L+PF+++++K+VD
Sbjct: 122 STVVNEQQETLGTVAGLIDNGAHQILRIVDEGG----TER-------LVPFVEVYVKSVD 170
Query: 568 IIKKKIIVDW 577
+ K I+VDW
Sbjct: 171 VAGKHIVVDW 180
>sp|Q7VQF9|RIMM_BLOFL Ribosome maturation factor RimM OS=Blochmannia floridanus GN=rimM
PE=3 SV=1
Length = 185
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 405 ITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPN--SLKLFSIKILNKKNHGN 461
I IG + AYGI GW+ I F + ++IF Y FF +KL +++N KN+
Sbjct: 14 IVIGRIKGAYGILGWVKILSFTEKIEDIFVYNPWFIFFRSKWKVIKLEYWRLMNNKNY-- 71
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
+ + ++DRN A L + L + FPKL + D +YW ++I C + I+GK LG V
Sbjct: 72 --IVKFFNVSDRNHAMALSQHNLVVESIQFPKLYNKDEYYWKDIIGCKIMTINGKCLGRV 129
Query: 522 TEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI-KIFIKNVDIIKKKIIVDWD 578
II K H IL +++S + K LIPFI K IK+VD+IK ++VDW+
Sbjct: 130 ISIIDTKAHDIL-VVRSE-----EYGFTKYVDCLIPFILKKIIKDVDLIKNIVVVDWE 181
>sp|B1Y0H6|RIMM_LEPCP Ribosome maturation factor RimM OS=Leptothrix cholodnii (strain
ATCC 51168 / LMG 8142 / SP-6) GN=rimM PE=3 SV=1
Length = 194
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 13/190 (6%)
Query: 396 KTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFS----- 450
++S D ++ + V+ A+G+ GW + + D F +R+ + P++
Sbjct: 6 ESSWPAD-VVEVAKVIDAWGVKGWFRVHPYAADAQAVFTSRRWYLQGPDNRPRPKDAPAL 64
Query: 451 ---IKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLID 507
+ + K HG+ ++A + DR+ A L+G + +S FP + + +YW +LI
Sbjct: 65 PRLLHVTEVKEHGDGIVACAPEVADRSAAEALKGARIFVSRASFPTVGDGE-YYWIDLIG 123
Query: 508 CIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVD 567
V N G+ LGTVT++I HS+LR+ S + K + LIPF+ +I +V
Sbjct: 124 LSVVNRDGESLGTVTDLIDTGPHSVLRLGYPS---VDDKGAPVEGERLIPFVAAYIDSVQ 180
Query: 568 IIKKKIIVDW 577
+ +K+I+ DW
Sbjct: 181 LDQKRIVADW 190
>sp|A4SW74|RIMM_POLSQ Ribosome maturation factor RimM OS=Polynucleobacter necessarius
subsp. asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rimM PE=3 SV=1
Length = 188
Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 400 TVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFF-----------DPNSLKL 448
++D+LI +G + A G+ G + ++ D ++ +W L
Sbjct: 5 SLDNLIELGAISEAQGLQGQVKVRPHSPDPVALLSSKVVWLSLLPRRSAGALSSTEEATL 64
Query: 449 FSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDC 508
K+ + K H V+ L G++DR+ A L+G + + + FPK SD++YW +LI C
Sbjct: 65 TQYKVKSAKMHSGNVVLTLDGVSDRDQALALKGARILLDRDAFPKA-ESDSYYWVDLIGC 123
Query: 509 IVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDI 568
+N+ ++LG V ++ +N H ++ I STK I +Y L+PF+K ++NVD+
Sbjct: 124 KAKNLQDEILGDVIDVTENGAHGVIAIGDISTKTI---QY------LVPFVKEVVRNVDL 174
Query: 569 IKKKIIVDW 577
K + +DW
Sbjct: 175 PNKLLTLDW 183
>sp|Q31HX9|RIMM_THICR Ribosome maturation factor RimM OS=Thiomicrospira crunogena (strain
XCL-2) GN=rimM PE=3 SV=1
Length = 181
Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 17/180 (9%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDK-NIFFYARKIWFFD-PNSLKLFSIKILNKKNH 459
D I +G + YG+ GW+ I D + NI Y+ W N + F ++ +
Sbjct: 7 DEKIILGQINGIYGVQGWVKIFSHTDPRQNILSYSP--WLVKVKNEWRTFQVEEGRAQQG 64
Query: 460 GNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLG 519
G V+A L GI DR+LA + G + I P + + FYW LI C V ++ G+ LG
Sbjct: 65 GKSVVAKLEGIDDRDLAREYIGCEIAILPEQLPA--TEEGFYWMQLIGCQVTSVEGEDLG 122
Query: 520 TVTEIIQNKVHSILRI-IQSSTKIICTKKYKKKYGILIPFI-KIFIKNVDIIKKKIIVDW 577
VTEI++ H +LR+ QS ++ T LIPF+ + FI +VD+ K+I VDW
Sbjct: 123 QVTEIVETGAHDVLRVEKQSDAGLVST---------LIPFVMETFILDVDVESKQIQVDW 173
>sp|A9IK36|RIMM_BORPD Ribosome maturation factor RimM OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=rimM PE=3 SV=1
Length = 206
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 404 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFD--PNSLKLF------SIKILN 455
L+ +G + AYG+ GW+ ++ ++ A W P + K++
Sbjct: 13 LVELGRINGAYGVKGWVKVQPHSAQADVLRKASSWWLTRLVPEKARGVVASAPQEYKVVQ 72
Query: 456 KKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDC-IVENIH 514
+ G V+A L GITDR+ A L+G +++S + FP + D +YW +LI C N
Sbjct: 73 ARPQGASVVAQLAGITDRDQAEALRGLAVQVSRSQFPA-AADDEYYWVDLIGCAFYTNAE 131
Query: 515 GK--LLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYG------ILIPFIKIFIKNV 566
G+ +G V E+ N H+ILR++ + ++ +L+PF+ I V
Sbjct: 132 GEPARVGVVEEVFDNGAHAILRVVLQRAPAPGGEPEPRRDAKGRPLEMLVPFVGAHILAV 191
Query: 567 DIIKKKIIVDW 577
D+ ++I +W
Sbjct: 192 DLSARRIDSNW 202
>sp|Q8X4P8|FUMA_ECO57 Fumarate hydratase class I, aerobic OS=Escherichia coli O157:H7
GN=fumA PE=3 SV=3
Length = 548
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + + GV Y N
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEA---ALARGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQ---DINMNSIIK 183
P L +++++ + T+G CPP + IGGT + L K+ D +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + EL EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RH 245
R+
Sbjct: 322 RN 323
>sp|P0AC33|FUMA_ECOLI Fumarate hydratase class I, aerobic OS=Escherichia coli (strain
K12) GN=fumA PE=1 SV=2
Length = 548
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + + GV Y N
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEA---ALARGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQ---DINMNSIIK 183
P L +++++ + T+G CPP + IGGT + L K+ D +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + EL EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RH 245
R+
Sbjct: 322 RN 323
>sp|P0AC34|FUMA_ECOL6 Fumarate hydratase class I, aerobic OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=fumA PE=3 SV=2
Length = 548
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + + GV Y N
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEA---ALARGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQ---DINMNSIIK 183
P L +++++ + T+G CPP + IGGT + L K+ D +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + EL EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RH 245
R+
Sbjct: 322 RN 323
>sp|B1XVN2|RIMM_POLNS Ribosome maturation factor RimM OS=Polynucleobacter necessarius
subsp. necessarius (strain STIR1) GN=rimM PE=3 SV=1
Length = 184
Score = 86.7 bits (213), Expect = 5e-16, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 25/191 (13%)
Query: 400 TVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWF-------------FDPNSL 446
+++ LI +G + A G+ G + I+ + ++ +W + SL
Sbjct: 5 SLNDLIELGAISEAQGLRGQVKIRPHSSEPVALLSSKSVWLSLIPRRDAGLSSPVEQASL 64
Query: 447 KLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLI 506
+ +K + K H V+ L G+TDR+ A L+G + ++ + FPK+ +D++YW +LI
Sbjct: 65 TQYKVK--SAKMHSGNVVIALEGVTDRDQALALKGARILVARDAFPKV-ETDSYYWIDLI 121
Query: 507 DCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNV 566
C N+ + LG V ++ +N H ++ I +STK I +Y L+PF+K +++V
Sbjct: 122 GCNAINLQNETLGEVIDVTENGAHGVIAIGDASTKTI---QY------LVPFVKQVVQDV 172
Query: 567 DIIKKKIIVDW 577
D+ K I +DW
Sbjct: 173 DLSNKTISLDW 183
>sp|Q8XBK7|TTDA_ECO57 L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli O157:H7
GN=ttdA PE=3 SV=1
Length = 303
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 13/245 (5%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATIKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVP-GNFLDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V ++VP G+ +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIVPDGDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRH-----PNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGFLLFWISIKLLSNDH 261
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G LL + + H
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSH 298
Query: 262 NYTTI 266
+ +
Sbjct: 299 TRSAL 303
>sp|A5UG05|RIMM_HAEIG Ribosome maturation factor RimM OS=Haemophilus influenzae (strain
PittGG) GN=rimM PE=3 SV=1
Length = 175
Score = 86.3 bits (212), Expect = 7e-16, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 12/178 (6%)
Query: 403 HLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 461
H+ +G + YGI GW+ I + ++IF Y + WF + SI++ N + H +
Sbjct: 5 HIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDY--QPWFLKIKG-EWQSIELENWRYHNH 61
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
++ L G+ DR A L + + ++ FP+L D +YW +LI C V N+ G +GTV
Sbjct: 62 EIIVKLKGVDDREAAQILANVEIGVDLSVFPELEEGD-YYWHDLIGCTVVNLEGYTMGTV 120
Query: 522 TEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI-KIFIKNVDIIKKKIIVDWD 578
TE+++ + +L +++++TK K+ + LIPF+ + +K VD+ K I VDWD
Sbjct: 121 TEMMETGSNDVL-VVKANTKDAFGKQER-----LIPFLYEQVVKRVDLTTKTIEVDWD 172
>sp|A5UAV2|RIMM_HAEIE Ribosome maturation factor RimM OS=Haemophilus influenzae (strain
PittEE) GN=rimM PE=3 SV=1
Length = 175
Score = 86.3 bits (212), Expect = 7e-16, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 12/178 (6%)
Query: 403 HLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 461
H+ +G + YGI GW+ I + ++IF Y + WF + SI++ N + H +
Sbjct: 5 HIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDY--QPWFLKIKG-EWQSIELENWRYHNH 61
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
++ L G+ DR A L + + ++ FP+L D +YW +LI C V N+ G +GTV
Sbjct: 62 EIIVKLKGVDDREAAQILANVEIGVDLSVFPELEEGD-YYWHDLIGCTVVNLEGYTMGTV 120
Query: 522 TEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI-KIFIKNVDIIKKKIIVDWD 578
TE+++ + +L +++++TK K+ + LIPF+ + +K VD+ K I VDWD
Sbjct: 121 TEMMETGSNDVL-VVKANTKDAFGKQER-----LIPFLYEQVVKRVDLTTKTIEVDWD 172
>sp|Q4QNY7|RIMM_HAEI8 Ribosome maturation factor RimM OS=Haemophilus influenzae (strain
86-028NP) GN=rimM PE=3 SV=2
Length = 178
Score = 85.9 bits (211), Expect = 7e-16, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 12/178 (6%)
Query: 403 HLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 461
H+ +G + YGI GW+ I + ++IF Y + WF + SI++ N + H +
Sbjct: 8 HIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDY--QPWFLKIKG-EWQSIELENWRYHNH 64
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
++ L G+ DR A L + + ++ FP+L D +YW +LI C V N+ G +GTV
Sbjct: 65 EIIVKLKGVDDRETAQILANVEIGVDLSVFPELEEGD-YYWHDLIGCTVVNLEGYTMGTV 123
Query: 522 TEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI-KIFIKNVDIIKKKIIVDWD 578
TE+++ + +L +++++TK K+ + LIPF+ + +K VD+ K I VDWD
Sbjct: 124 TEMMETGSNDVL-VVKANTKDAFGKQER-----LIPFLYEQVVKRVDLTTKTIEVDWD 175
>sp|P44568|RIMM_HAEIN Ribosome maturation factor RimM OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rimM PE=1 SV=1
Length = 178
Score = 85.9 bits (211), Expect = 8e-16, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 12/178 (6%)
Query: 403 HLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 461
H+ +G + YGI GW+ I + ++IF Y + WF + SI++ N + H +
Sbjct: 8 HIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDY--QPWFLKIKG-EWQSIELENWRYHNH 64
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
++ L G+ DR A L + + ++ FP+L D +YW +LI C V N+ G +GTV
Sbjct: 65 EIIVKLKGVDDREAAQILANVEIGVDLSVFPELEEGD-YYWHDLIGCTVVNLEGYTMGTV 123
Query: 522 TEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI-KIFIKNVDIIKKKIIVDWD 578
TE+++ + +L +++++TK K+ + LIPF+ + +K VD+ K I VDWD
Sbjct: 124 TEMMETGSNDVL-VVKANTKDAFGKQER-----LIPFLYEQVVKRVDLTTKTIEVDWD 175
>sp|Q3YXI2|TTDA_SHISS L(+)-tartrate dehydratase subunit alpha OS=Shigella sonnei (strain
Ss046) GN=ttdA PE=3 SV=1
Length = 303
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 13/245 (5%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVPGNF-LDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V +++P N +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP ++G+GI + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG-----SRHPNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGFLLFWISIKLLSNDH 261
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G LL + + H
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSH 298
Query: 262 NYTTI 266
+ +
Sbjct: 299 TRSAL 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,466,145
Number of Sequences: 539616
Number of extensions: 9036960
Number of successful extensions: 23324
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 631
Number of HSP's that attempted gapping in prelim test: 21712
Number of HSP's gapped (non-prelim): 1346
length of query: 578
length of database: 191,569,459
effective HSP length: 123
effective length of query: 455
effective length of database: 125,196,691
effective search space: 56964494405
effective search space used: 56964494405
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)