Query psy3773
Match_columns 578
No_of_seqs 481 out of 2759
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 16:56:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06246 fumarate hydratase; P 100.0 2.7E-86 5.9E-91 671.9 20.5 240 1-250 38-280 (280)
2 TIGR00722 ttdA_fumA_fumB hydro 100.0 5.7E-86 1.2E-90 667.4 20.4 237 1-249 30-272 (273)
3 PRK08230 tartrate dehydratase 100.0 2.1E-85 4.5E-90 666.6 20.7 241 1-253 39-286 (299)
4 PF05681 Fumerase: Fumarate hy 100.0 6E-85 1.3E-89 661.5 20.2 239 1-250 30-271 (271)
5 COG1951 TtdA Tartrate dehydrat 100.0 1E-82 2.2E-87 641.5 19.9 243 1-253 39-284 (297)
6 PRK15389 fumarate hydratase; P 100.0 2.5E-79 5.4E-84 662.4 21.5 274 1-290 76-368 (536)
7 PRK15392 putative fumarate hyd 100.0 2.4E-78 5.2E-83 650.8 23.1 284 1-297 76-375 (550)
8 PLN00133 class I-fumerate hydr 100.0 6.5E-78 1.4E-82 649.0 22.6 283 1-298 113-413 (576)
9 PTZ00226 fumarate hydratase; P 100.0 9.8E-78 2.1E-82 650.5 22.1 284 1-298 106-407 (570)
10 PRK15390 fumarate hydratase Fu 100.0 2E-77 4.4E-82 645.7 21.4 283 1-295 77-374 (548)
11 PRK15391 fumarate hydratase Fu 100.0 3.2E-76 6.9E-81 636.4 22.0 284 1-296 77-375 (548)
12 PRK14591 rimM 16S rRNA-process 100.0 4.4E-42 9.5E-47 328.9 19.6 164 402-578 3-166 (169)
13 COG0806 RimM RimM protein, req 100.0 5.4E-41 1.2E-45 320.9 18.5 165 402-578 5-169 (174)
14 PRK00122 rimM 16S rRNA-process 100.0 9.4E-41 2E-45 320.6 20.0 165 400-578 3-167 (172)
15 PRK14590 rimM 16S rRNA-process 100.0 1.7E-40 3.8E-45 318.3 19.6 163 405-578 1-165 (171)
16 PRK14592 rimM 16S rRNA-process 100.0 2.3E-40 5.1E-45 315.9 18.7 159 403-578 1-160 (165)
17 TIGR02273 16S_RimM 16S rRNA pr 100.0 7.3E-40 1.6E-44 312.4 20.0 163 404-578 1-163 (165)
18 PRK14594 rimM 16S rRNA-process 100.0 1.5E-39 3.2E-44 310.6 19.2 160 404-578 1-162 (166)
19 PRK14593 rimM 16S rRNA-process 100.0 8E-39 1.7E-43 310.4 18.3 168 403-578 3-177 (184)
20 PRK13829 rimM 16S rRNA-process 100.0 1.6E-36 3.6E-41 288.6 17.8 156 403-578 2-157 (162)
21 PRK13828 rimM 16S rRNA-process 100.0 2.5E-36 5.5E-41 287.0 18.4 147 416-578 1-148 (161)
22 TIGR03716 R_switched_YkoY inte 99.9 8.4E-26 1.8E-30 223.2 3.9 143 192-353 21-170 (215)
23 PF03741 TerC: Integral membra 99.9 2.9E-25 6.4E-30 215.2 3.4 144 191-353 23-180 (183)
24 TIGR03717 R_switched_YjbE inte 99.9 7.9E-25 1.7E-29 210.9 3.8 145 191-353 25-172 (176)
25 COG0861 TerC Membrane protein 99.9 2E-24 4.3E-29 218.4 3.3 157 191-353 43-208 (254)
26 PF01782 RimM: RimM N-terminal 99.8 1.1E-19 2.3E-24 154.6 10.8 84 406-490 1-84 (84)
27 PRK00040 rpsP 30S ribosomal pr 99.7 1.1E-17 2.5E-22 139.0 2.3 58 348-405 18-75 (75)
28 TIGR00002 S16 ribosomal protei 99.7 1.3E-17 2.8E-22 139.7 1.5 60 348-409 17-76 (78)
29 PRK14525 rpsP 30S ribosomal pr 99.7 2.6E-17 5.5E-22 140.4 1.6 62 348-411 19-80 (88)
30 PRK14524 rpsP 30S ribosomal pr 99.6 3.1E-17 6.7E-22 141.7 1.7 61 348-410 18-78 (94)
31 CHL00005 rps16 ribosomal prote 99.6 2.8E-17 6.1E-22 138.5 1.2 63 348-414 18-80 (82)
32 PRK14523 rpsP 30S ribosomal pr 99.6 2.9E-17 6.3E-22 148.9 1.1 73 348-420 18-90 (137)
33 COG0228 RpsP Ribosomal protein 99.6 4.7E-17 1E-21 137.1 1.1 61 348-409 18-78 (87)
34 PRK14520 rpsP 30S ribosomal pr 99.6 8.6E-17 1.9E-21 149.7 1.5 70 348-419 19-89 (155)
35 PRK14521 rpsP 30S ribosomal pr 99.6 1.1E-16 2.3E-21 153.1 1.2 72 348-421 19-90 (186)
36 TIGR03718 R_switched_Alx integ 99.6 2E-16 4.4E-21 163.2 1.3 144 191-353 90-266 (302)
37 KOG3419|consensus 99.6 3E-16 6.5E-21 135.9 1.6 63 348-410 19-82 (112)
38 PRK14522 rpsP 30S ribosomal pr 99.6 4.9E-16 1.1E-20 137.5 1.1 57 348-407 19-75 (116)
39 PF00886 Ribosomal_S16: Riboso 99.5 3.1E-15 6.8E-20 120.4 1.8 51 348-398 11-62 (62)
40 PF05239 PRC: PRC-barrel domai 98.4 1.3E-06 2.7E-11 72.9 8.2 74 497-578 1-75 (79)
41 PRK14013 hypothetical protein; 98.3 2E-07 4.3E-12 97.4 2.1 74 274-353 223-298 (338)
42 PF03741 TerC: Integral membra 97.0 0.00099 2.1E-08 65.2 5.0 81 278-358 2-82 (183)
43 TIGR03717 R_switched_YjbE inte 96.8 0.00099 2.1E-08 64.8 3.9 80 276-356 2-81 (176)
44 cd00226 PRCH Photosynthetic re 96.4 0.0098 2.1E-07 60.3 7.4 59 503-576 146-207 (246)
45 TIGR03716 R_switched_YkoY inte 95.1 0.033 7.2E-07 55.9 5.5 76 280-356 1-76 (215)
46 TIGR03718 R_switched_Alx integ 94.6 0.041 8.9E-07 57.8 4.7 82 275-356 64-147 (302)
47 COG0861 TerC Membrane protein 93.2 0.11 2.3E-06 53.6 4.6 93 270-362 14-106 (254)
48 COG1873 Protein implicated in 93.0 0.28 6.1E-06 42.4 6.1 59 498-559 4-65 (87)
49 COG2451 Ribosomal protein L35A 85.7 1.5 3.3E-05 38.3 4.8 29 459-487 24-52 (100)
50 TIGR01150 puhA photosynthetic 76.7 7.7 0.00017 39.6 6.9 57 504-576 150-210 (252)
51 PRK04337 50S ribosomal protein 75.9 3.7 8.1E-05 35.6 3.8 28 459-486 18-45 (87)
52 PF05165 GGDN: GGDN family; I 75.1 2.7 5.9E-05 43.1 3.3 27 150-176 207-235 (246)
53 COG3277 GAR1 RNA-binding prote 69.1 14 0.0003 32.8 5.9 33 506-538 27-59 (98)
54 PF01247 Ribosomal_L35Ae: Ribo 69.1 11 0.00024 33.3 5.2 57 461-536 20-78 (95)
55 PTZ00041 60S ribosomal protein 65.7 7.3 0.00016 35.7 3.6 28 459-486 37-64 (120)
56 COG1280 RhtB Putative threonin 58.8 24 0.00052 35.0 6.3 90 309-398 41-139 (208)
57 PRK02240 GTP cyclohydrolase II 58.7 7.1 0.00015 40.2 2.5 25 152-176 217-243 (254)
58 KOG0887|consensus 58.1 9.4 0.0002 34.1 2.8 53 458-526 27-80 (111)
59 PRK13149 H/ACA RNA-protein com 57.7 21 0.00045 29.9 4.7 33 506-538 26-58 (73)
60 TIGR02888 spore_YlmC_YmxH spor 52.3 30 0.00066 29.2 4.9 68 502-576 2-75 (76)
61 TIGR00949 2A76 The Resistance 50.3 40 0.00086 32.3 6.1 51 306-356 20-75 (185)
62 PRK09304 arginine exporter pro 49.9 50 0.0011 32.5 6.9 67 285-356 18-90 (207)
63 COG3881 PRC-barrel domain cont 49.6 56 0.0012 31.5 6.6 82 447-535 35-120 (176)
64 TIGR00948 2a75 L-lysine export 46.2 60 0.0013 31.0 6.6 52 306-357 21-77 (177)
65 COG3768 Predicted membrane pro 45.2 48 0.001 35.4 6.0 47 306-352 65-111 (350)
66 PF04332 DUF475: Protein of un 43.8 4.6 0.0001 42.3 -1.6 58 274-339 183-244 (294)
67 PTZ00041 60S ribosomal protein 43.8 23 0.00049 32.6 3.0 60 383-442 50-117 (120)
68 PRK14013 hypothetical protein; 43.7 29 0.00063 37.3 4.2 77 277-353 33-134 (338)
69 KOG0887|consensus 43.6 26 0.00056 31.5 3.2 60 383-442 41-108 (111)
70 PF06695 Sm_multidrug_ex: Puta 42.0 35 0.00075 31.2 4.0 57 306-369 19-75 (121)
71 COG2451 Ribosomal protein L35A 40.6 28 0.0006 30.7 2.9 46 384-429 38-83 (100)
72 COG2429 Archaeal GTP cyclohydr 39.8 46 0.001 34.0 4.7 28 150-177 211-240 (250)
73 PF09939 DUF2171: Uncharacteri 39.2 1.5E+02 0.0033 24.6 6.8 55 507-576 5-59 (67)
74 PF11990 DUF3487: Protein of u 36.5 81 0.0018 29.0 5.5 52 286-353 21-72 (121)
75 PF14159 CAAD: CAAD domains of 36.3 51 0.0011 28.7 3.9 48 306-353 16-67 (90)
76 PRK10229 threonine efflux syst 35.2 89 0.0019 30.5 6.0 49 308-356 39-92 (206)
77 PRK10520 rhtB homoserine/homos 34.6 1E+02 0.0022 30.1 6.3 51 307-357 39-94 (205)
78 TIGR01620 hyp_HI0043 conserved 34.6 95 0.0021 32.8 6.3 46 306-351 15-60 (289)
79 COG1279 Lysine efflux permease 33.8 1.2E+02 0.0025 30.5 6.5 58 303-360 33-94 (202)
80 PRK10323 cysteine/O-acetylseri 33.6 1.4E+02 0.0031 29.1 7.1 68 286-356 20-93 (195)
81 PRK04337 50S ribosomal protein 31.6 33 0.00071 29.9 1.9 45 384-429 32-76 (87)
82 PF01810 LysE: LysE type trans 29.9 1.4E+02 0.0031 28.5 6.4 56 307-362 26-86 (191)
83 PF10861 DUF2784: Protein of U 28.4 81 0.0018 28.6 4.0 30 334-374 28-57 (112)
84 PLN02777 photosystem I P subun 27.9 60 0.0013 31.4 3.2 44 310-353 95-142 (167)
85 PRK02240 GTP cyclohydrolase II 27.2 53 0.0011 34.0 2.9 40 133-177 69-109 (254)
86 PF02540 NAD_synthase: NAD syn 27.0 1.4E+02 0.0029 30.6 5.9 37 131-172 4-42 (242)
87 PF04410 Gar1: Gar1/Naf1 RNA b 25.1 1.7E+02 0.0036 27.8 5.7 31 507-537 51-81 (154)
88 COG2899 Uncharacterized protei 24.8 11 0.00023 39.5 -2.5 37 274-316 230-266 (346)
89 PRK10958 leucine export protei 24.8 2.1E+02 0.0045 28.3 6.6 70 285-357 23-98 (212)
90 PF07290 DUF1449: Protein of u 22.1 65 0.0014 32.2 2.4 31 410-442 158-188 (202)
91 PF01247 Ribosomal_L35Ae: Ribo 21.1 61 0.0013 28.7 1.7 46 384-429 32-84 (95)
92 COG3881 PRC-barrel domain cont 20.9 68 0.0015 31.0 2.1 29 503-531 5-34 (176)
93 PRK09459 pspG phage shock prot 20.7 4.4E+02 0.0094 22.5 6.5 45 307-352 21-65 (76)
No 1
>PRK06246 fumarate hydratase; Provisional
Probab=100.00 E-value=2.7e-86 Score=671.91 Aligned_cols=240 Identities=48% Similarity=0.823 Sum_probs=234.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
+|+||++|++|++||+|+++|++.++|+|||||+|+||+++|+++++.| ++++++|+|||++||+ ++|||+|+|+|
T Consensus 38 ~E~s~~ak~~l~~ileN~~iA~~~~~P~CQDTG~~~~fv~iG~~v~~~~--~~l~~ai~egv~~a~~--~~pLR~s~V~~ 113 (280)
T PRK06246 38 KEESPIGKEILKAILENAEIAKEEQVPLCQDTGMAVVFVEIGQDVHIEG--GDLEDAINEGVRKGYE--EGYLRKSVVAD 113 (280)
T ss_pred hccChhHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCcccCC--ccHHHHHHHHHHHHhc--cCCCchhccCC
Confidence 5999999999999999999999999999999999999999999999985 4799999999999999 89999999988
Q ss_pred CccCccCCCCCCceEEEEEeeCCcEEEEEEEecCCCCcccccccccCCch---hHHHHHHHHhhccCCCCCCCceeEEEE
Q psy3773 81 PHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGI 157 (578)
Q Consensus 81 p~~~r~ntg~n~p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~~l~p~~---~v~~~v~~~v~~~G~~~CpP~~vgvGi 157 (578)
|+ +|+|||||||++||+++++||+++|+++||||||||+|+++||+|++ ||++||+|+|.++|+|||||++|||||
T Consensus 114 pl-~r~NtgdNtpa~i~~~~v~gd~~~i~~~~KGgGSEn~s~l~ml~P~~g~e~i~~fvle~v~~aG~~~CPP~~vGVGI 192 (280)
T PRK06246 114 PL-TRKNTGDNTPAVIHTEIVPGDKLKITVAPKGGGSENMSALKMLKPADGLEGIKKFVLETVKEAGGNPCPPIIVGVGI 192 (280)
T ss_pred cc-cCccCCCCccceEEEEEecCCEEEEEEEecCCccccHhhhcccCcchhHHHHHHHHHHHHHHcCCCCCCCCeEEEEe
Confidence 95 99999999999999999999999999999999999999999999985 899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhccccccccccccCCChhhHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhccccccccCCceEEe
Q psy3773 158 GGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAII 237 (578)
Q Consensus 158 Ggt~~~a~~laK~al~r~~~~~~~~~~~~~~~~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p~h~a~~pvav~ 237 (578)
|||+|+|++|||+||+|++| ++||||++++||+||++++|++|||||||||.+|+++|||+.+|+|+|++|||||
T Consensus 193 GGt~d~a~~laK~Allr~i~-----~~n~~~~~a~lE~eLl~~iN~lGIGp~GlGG~tTal~V~Ie~~p~H~AslPVaV~ 267 (280)
T PRK06246 193 GGTFDKAAKLAKKALLRPIG-----ERNPDPEIAALEEELLEEINKLGIGPMGLGGKTTALDVKIETYPCHIASLPVAVN 267 (280)
T ss_pred CCCHHHHHHHHHHHhcCccc-----CCCCChHHHHHHHHHHHHHHhcCcCCCccCCceEEEEEEEeecCCcccCCceEEE
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEEE
Q psy3773 238 PNCAATRHGFLLF 250 (578)
Q Consensus 238 ~~C~~~R~g~~li 250 (578)
+|||++||+.+.|
T Consensus 268 ~~C~a~R~~~v~i 280 (280)
T PRK06246 268 IQCHAARHAEVVL 280 (280)
T ss_pred cccchhhCceEeC
Confidence 9999999998764
No 2
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=100.00 E-value=5.7e-86 Score=667.45 Aligned_cols=237 Identities=42% Similarity=0.660 Sum_probs=230.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
+|+||+||++|++||+|+++|+++++|+|||||+|+||+|+|+++++. ++++++|+||||+||+ ++|||+|+| +
T Consensus 30 ~E~s~~ak~~l~~ileN~~iA~~~~~P~CQDTG~~~~fv~iG~~~~~~---~~l~~ai~egV~~a~~--~~~LR~s~V-~ 103 (273)
T TIGR00722 30 REESEIAKINLEAILDNIEIAEKLGVPVCQDTGVPIFFVKVGSRFVLI---GKLYEAIKQGVEEATE--EVPLRPNAV-H 103 (273)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEECCeecCC---chHHHHHHHHHHHHhc--cCCCchhcc-C
Confidence 599999999999999999999999999999999999999999999876 4699999999999999 899999999 5
Q ss_pred CccCccCCCCCC---ceEEEEEeeCCcEEEEEEEecCCCCcccccccccCCch---hHHHHHHHHhhccCCCCCCCceeE
Q psy3773 81 PHFIRKNTQDNT---PAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILG 154 (578)
Q Consensus 81 p~~~r~ntg~n~---p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~~l~p~~---~v~~~v~~~v~~~G~~~CpP~~vg 154 (578)
| ++|+||+||| ||+||+++|+||+++|+++||||||||||+++||+|++ ||++||+|+|+++|+|||||++||
T Consensus 104 ~-~~r~Nt~dNtg~~~p~i~~~~v~gd~~~i~v~~KGgGsEn~s~l~mL~P~~g~egi~~fVle~V~~aG~~~CPP~~vG 182 (273)
T TIGR00722 104 P-LTRENTGDNTGLGVPQIHVEIVPGDELEIVVFPKGAGSENPSALKMLKPSDGIEGVKKFVLETVKNAGGKPCPPIIVG 182 (273)
T ss_pred C-CccccCCCCCCCCCCEEEEEEecCCEEEEEEEecCCcccchhheeeecccccHHHHHHHHHHHHHHcCCCCCCCCeEE
Confidence 6 6999999999 78999999999999999999999999999999999984 699999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHhccccccccccccCCChhhHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhccccccccCCce
Q psy3773 155 IGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPV 234 (578)
Q Consensus 155 vGiGgt~~~a~~laK~al~r~~~~~~~~~~~~~~~~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p~h~a~~pv 234 (578)
||||||+|+|++|||+||+|++| ++||||++++||+||++++|++|||||||||.+|+|+|||+.+|+|+|++||
T Consensus 183 VGIGGt~d~aa~LaK~Allr~ig-----~~n~d~~~a~lE~elle~iN~lGIGp~GlGG~tTal~V~Ie~~p~H~AslPV 257 (273)
T TIGR00722 183 VGIGGSFETAAKLAKKALLRPIG-----ERHPNPKIAKLELELLEEINSLGIGPMGLGGKTTALDVKIESAHCHTASLPV 257 (273)
T ss_pred EEeCCCHHHHHHHHHHHhhhhhc-----cCCCChhHHHHHHHHHHHHHhcCcCCCccCCCeEEEEEEEeecCCcccCCce
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccceEE
Q psy3773 235 AIIPNCAATRHGFLL 249 (578)
Q Consensus 235 av~~~C~~~R~g~~l 249 (578)
|||+|||++||+.+.
T Consensus 258 aVn~~C~a~R~a~~~ 272 (273)
T TIGR00722 258 AVNIQCWAHRRATLV 272 (273)
T ss_pred EEEcccchhhCeeEe
Confidence 999999999999875
No 3
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=100.00 E-value=2.1e-85 Score=666.57 Aligned_cols=241 Identities=29% Similarity=0.520 Sum_probs=233.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
+|+||+||++|++||+|+++|+++++|+|||||+|+||+|+|++|++. ++++++|+||||+||+ ++|||+|+| +
T Consensus 39 ~E~s~~ak~~L~~ileN~~iA~~~~~PiCQDTG~~~~fv~iG~~v~~~---g~l~~aI~egVr~a~~--~~~LR~s~V-~ 112 (299)
T PRK08230 39 AETSPLAKIIYDTMFENQQLAIDLNRPSCQDTGVIQFFVKVGARFPLL---GELESILKEAVEEATV--KAPLRHNAV-E 112 (299)
T ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCcccC---chHHHHHHHHHHHHhc--cCCCCcccC-C
Confidence 589999999999999999999999999999999999999999999987 3599999999999999 899999999 5
Q ss_pred CccCccCCCCCCce---EEEEEeeC-CcEEEEEEEecCCCCcccccccccCCc---hhHHHHHHHHhhccCCCCCCCcee
Q psy3773 81 PHFIRKNTQDNTPA---VINMELVP-GNFLDIKIASKGGGSENKTKFAMLNPS---DSLVDWIMKTVPTMGAGWCPPGIL 153 (578)
Q Consensus 81 p~~~r~ntg~n~p~---~i~~~~v~-gd~~~i~~~~KGgGsen~s~~~~l~p~---~~v~~~v~~~v~~~G~~~CpP~~v 153 (578)
| ++|+|||||||+ +||+++|+ ||+++|+++||||||||||+++||+|+ |||++||+|+|.++|+|||||++|
T Consensus 113 ~-l~r~NtgdNt~~~~pvi~~~iv~~gd~l~I~~~~KGgGsEn~s~~~mL~P~~g~egi~~fVle~V~~aG~~~CPP~iv 191 (299)
T PRK08230 113 T-FDEYNTGKNTGSGVPWVFWEIVPDSDDAEIEVYMAGGGCTLPGRAKVLMPGEGYEGVVKFVFDVITSYGVNACPPLLV 191 (299)
T ss_pred C-ccCcCCCCCCCCCCCEEEEEEecCCCEEEEEEEecCCCcccHhhheeeCCccchhHHHHHHHHHHHhhCCCCCCCceE
Confidence 6 599999999986 99999999 699999999999999999999999998 689999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHhccccccccccccCCChhhHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhccccccccCCc
Q psy3773 154 GIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKP 233 (578)
Q Consensus 154 gvGiGgt~~~a~~laK~al~r~~~~~~~~~~~~~~~~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p~h~a~~p 233 (578)
|||||||+|+|++|||+||+|++| ++||||++++||+||++++|++|||||||||.+|+|+|||+.+|+|+|++|
T Consensus 192 GVGIGGt~d~aa~LaK~Allr~i~-----~~n~~p~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H~AslP 266 (299)
T PRK08230 192 GVGIATSVETAAVLSKKAILRPIG-----SRNPNPRAAELEKRLEEGLNRIGLGPQGLTGNSSVMGVNIESAARHPSTIG 266 (299)
T ss_pred EEEecCCHHHHHHHHHHHhccccc-----CCCCChhHHHHHHHHHHHHhhcCcCCCcCCCceEEEEEEeeecCccccCCc
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccccccccceEEEeee
Q psy3773 234 VAIIPNCAATRHGFLLFWIS 253 (578)
Q Consensus 234 vav~~~C~~~R~g~~li~~a 253 (578)
||||+|||++||+.+.|+.-
T Consensus 267 VaVn~~C~a~R~~~~~i~~d 286 (299)
T PRK08230 267 VAVSTGCWAHRRGTIVFDAD 286 (299)
T ss_pred eEEEcCchhhcCcEEEECCC
Confidence 99999999999999999764
No 4
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=100.00 E-value=6e-85 Score=661.46 Aligned_cols=239 Identities=48% Similarity=0.789 Sum_probs=234.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
+|+|+.||++|++||||+++|++.++|+|||||+|+||+|+|+++++. ++++++|++||++||+ ++|||||+|.|
T Consensus 30 ~E~~~~ak~vl~~ileN~~iA~~~~~PlCQDTG~~~~fv~~G~~~~~~---g~l~~ai~~gv~~a~~--~~~LR~s~V~~ 104 (271)
T PF05681_consen 30 RETSPLAKWVLEQILENAEIAAKEKLPLCQDTGIPVFFVEIGQDVPIE---GDLEEAINEGVRKAYK--EGPLRPSVVSD 104 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhhcCcccccCCCeEEEEEEECCCCCcC---hhHHHHHHHHHHHHHh--cCCCCccccCC
Confidence 599999999999999999999999999999999999999999999998 4899999999999999 89999999988
Q ss_pred CccCccCCCCCCceEEEEEeeCCcEEEEEEEecCCCCcccccccccCCch---hHHHHHHHHhhccCCCCCCCceeEEEE
Q psy3773 81 PHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGI 157 (578)
Q Consensus 81 p~~~r~ntg~n~p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~~l~p~~---~v~~~v~~~v~~~G~~~CpP~~vgvGi 157 (578)
|+ +|+|||||+|++||+++++||+++|+++||||||||+|+++||+|++ +|++||+|+|+++|+|||||++|||||
T Consensus 105 pl-~r~Ntgdn~P~ii~~~~v~gd~l~i~~~~KGgGsEn~s~l~ml~p~~g~e~v~~fV~d~v~~ag~~~CPP~~iGVGI 183 (271)
T PF05681_consen 105 PL-TRKNTGDNTPAIIHIEIVPGDKLEITVLPKGGGSENMSALKMLNPSDGIEGVKKFVLDTVKKAGGNACPPYIIGVGI 183 (271)
T ss_pred cc-ccccCCCCCCceEEEEEcCCCEEEEEEEecCCCcccHhhhhccCccccHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Confidence 96 99999999999999999999999999999999999999999999994 899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhccccccccccccCCChhhHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhccccccccCCceEEe
Q psy3773 158 GGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAII 237 (578)
Q Consensus 158 Ggt~~~a~~laK~al~r~~~~~~~~~~~~~~~~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p~h~a~~pvav~ 237 (578)
|||+|+|++|||+||+|++| ++||||++++||+|+++++|++|||||||||.+|+|+|||+.+|+|+|++|||||
T Consensus 184 GGt~d~a~~laKkAllr~~~-----~~~~~~~~a~lE~elle~iN~lGIGp~GlGG~ttaL~V~I~~~p~H~AslpVav~ 258 (271)
T PF05681_consen 184 GGTFDEAALLAKKALLRPLG-----SRNPDPRYAELEEELLEAINKLGIGPQGLGGKTTALDVHIEVAPRHIASLPVAVN 258 (271)
T ss_pred CCCHHHHHHHHHHHhhhhhc-----CCCCCcHHHHHHHHHHHHHHhcCCCcCccCCccEEEEEEEEEcCCcccCceeEEE
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEEE
Q psy3773 238 PNCAATRHGFLLF 250 (578)
Q Consensus 238 ~~C~~~R~g~~li 250 (578)
+|||++||+.+.|
T Consensus 259 ~~C~a~Rr~~~~I 271 (271)
T PF05681_consen 259 VQCWAHRRATAVI 271 (271)
T ss_pred ccchhhhCceeEC
Confidence 9999999998764
No 5
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=100.00 E-value=1e-82 Score=641.53 Aligned_cols=243 Identities=49% Similarity=0.738 Sum_probs=235.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
+|+|+.||++|.+||+|+++|++.++|+|||||+|+||+|+|+++.+. ++++++|+||||+||+ ++|||+|.+.|
T Consensus 39 ~Ees~~ak~~l~~il~N~~ia~~~~~P~CQDTG~~~~fvkvG~~~~~~---~~l~~~i~egVr~a~~--~~~lR~sn~~~ 113 (297)
T COG1951 39 REESEIAKYVLLQILENSRIAAKENRPICQDTGIPIFFVKVGQRWPTG---GELEEALNEGVREATE--DNPLRPSNAVD 113 (297)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHhcCCCcccCCCceEEEEEcCCcccCC---CcHHHHHHHHHHHhcc--cCCcchhcccC
Confidence 589999999999999999999999999999999999999999976644 6899999999999997 89999977779
Q ss_pred CccCccCCCCCCceEEEEEeeCCcEEEEEEEecCCCCcccccccccCCch---hHHHHHHHHhhccCCCCCCCceeEEEE
Q psy3773 81 PHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGI 157 (578)
Q Consensus 81 p~~~r~ntg~n~p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~~l~p~~---~v~~~v~~~v~~~G~~~CpP~~vgvGi 157 (578)
|+++|+||||||||+||+++||||+++|+++||||||||+|+++||+|++ +|++||+|+|.++|++||||++|||||
T Consensus 114 p~~~r~NtgdNtpa~i~~~~v~gd~v~i~~~~KGGGsEn~s~l~~l~Ps~~~e~i~~fVletv~~~G~~~CPP~~vgiGI 193 (297)
T COG1951 114 PLTKRVNTGDNTPAQIHVEIVPGDEVEILVAAKGGGSENKSALKMLTPSEGYEGIKDFVLETVRTLGGNACPPYIVGIGI 193 (297)
T ss_pred chhccccCCCCCCCeEEEEEcCCCcEEEEEEecCCCccchhhhheeCchhhhhHHHHHHHHHHHhcCCCCCCCeeEEEEe
Confidence 98779999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhccccccccccccCCChhhHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhccccccccCCceEEe
Q psy3773 158 GGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAII 237 (578)
Q Consensus 158 Ggt~~~a~~laK~al~r~~~~~~~~~~~~~~~~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p~h~a~~pvav~ 237 (578)
|||+|+|+.|||+||+||+| ++||+++++++|+|+++++|+||||||||||.+|+++|+|+.+|+|+||+||+|+
T Consensus 194 Ggt~e~A~~LaKkal~r~i~-----~~~~~~~~~~~eeelLe~iN~LGIG~~GlGG~tTaldV~V~~~p~H~AslpVav~ 268 (297)
T COG1951 194 GGTAEKAALLAKKALLRPID-----DRNPNEKNAKLEEELLEEINKLGIGPQGLGGKTTALDVKVERAPRHPASLPVAVN 268 (297)
T ss_pred CCcHHHHHHHHHHHhhCccc-----ccCCCccchhHHHHHHHHHHhhCcCcccCCCceEEEEEEEEeccCCccCCceEEE
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEEEeee
Q psy3773 238 PNCAATRHGFLLFWIS 253 (578)
Q Consensus 238 ~~C~~~R~g~~li~~a 253 (578)
+||||+||+.+.++..
T Consensus 269 ~~C~A~Rra~~~l~~~ 284 (297)
T COG1951 269 VQCWADRRAKAKLDGD 284 (297)
T ss_pred eeeccccceeEEECCC
Confidence 9999999999999986
No 6
>PRK15389 fumarate hydratase; Provisional
Probab=100.00 E-value=2.5e-79 Score=662.44 Aligned_cols=274 Identities=31% Similarity=0.410 Sum_probs=245.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
+|+||+||++|++||+|+++|+++++|+|||||+|+||+++|++|+ .| ++++++|++|||+||+ ++|||+|+|+
T Consensus 76 ~E~s~~ak~vl~~ileN~~iA~~~~~P~CQDTG~~~vfv~iG~~v~-~g--~~l~~aI~eGV~~ay~--~~pLR~svV~- 149 (536)
T PRK15389 76 PEASDNDKFVALDLLKNANIAAGGVLPMCQDTGTAIIMGKKGQRVW-TG--GDDEEALSRGVYDTYT--ELNLRYSQNA- 149 (536)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCCC-CC--chHHHHHHHHHHHHhc--cCCcchhhcC-
Confidence 4889999999999999999999999999999999999999999999 54 5799999999999999 8999999995
Q ss_pred Cc--cCccCCCCCCceEEEEEeeCCcEEEEEEEecCCCCcccccccccCCc----hhHHHHHHHHhhccCCCCCCCceeE
Q psy3773 81 PH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPS----DSLVDWIMKTVPTMGAGWCPPGILG 154 (578)
Q Consensus 81 p~--~~r~ntg~n~p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~~l~p~----~~v~~~v~~~v~~~G~~~CpP~~vg 154 (578)
|+ |+|+||+||||++||+++|+||+++|+++||||||||||+++|++|+ +||++||+|+|.++|+|||||++||
T Consensus 150 pl~~~~r~Nt~dNtpa~I~~~~v~gD~l~I~v~~KGgGSEN~s~l~ml~pa~L~p~gI~~fVle~V~~aG~~~CPP~iVG 229 (536)
T PRK15389 150 PLDMYEEKNTGTNLPAQIDIYATEGDEYKFLFMAKGGGSANKTFLYQETKALLNPDRLLAFLVEKMRTLGTAACPPYHLA 229 (536)
T ss_pred CCCcccccCCCCCcCcEEEEEEeCCCEEEEEEEecCCCccchhheeecccccCCHHHHHHHHHHHHHHcCCCCCCCceEE
Confidence 55 49999999999999999999999999999999999999999996665 4999999999999999999999999
Q ss_pred EEEcCC-HHHHHHHHHHHhcccccccccccc----CCCh---hhHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhcccc
Q psy3773 155 IGIGGT-PEKAMLMAKKVLMQDINMNSIIKN----GPKN---KIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYP 226 (578)
Q Consensus 155 vGiGgt-~~~a~~laK~al~r~~~~~~~~~~----~~~~---~~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p 226 (578)
|||||| +|+|++|||+||+|++| ++ ||+| ++++||+||++++|++||||| |||.+|+++|||+.+|
T Consensus 230 VGIGGt~~e~aa~LAK~AllR~~~-----~~~~~~~~~p~~~~~a~lE~eLle~IN~lGIGp~-lGG~tTaL~V~Ie~~p 303 (536)
T PRK15389 230 IVIGGTSAEANLKTVKLASAKYLD-----ALPTEGNEHGHAFRDLELEQEVLKLTQKLGIGAQ-FGGKYFCHDVRVIRLP 303 (536)
T ss_pred EEeCCCHHHHHHHHHHHHhhCccC-----CccccCCCcccchHHHHHHHHHHHHHHhhCcCcc-cCCCeEEEEEEEeecC
Confidence 999999 99999999999999999 77 7888 999999999999999999999 9999999999999999
Q ss_pred ccccCCceEEeccccccccceEEEeee----eecccCCCCCccccccchhHHHh-heeeeeecccChHH
Q psy3773 227 THAASKPVAIIPNCAATRHGFLLFWIS----IKLLSNDHNYTTIASGKNLIHAI-KTIIFADLIMSIDN 290 (578)
Q Consensus 227 ~h~a~~pvav~~~C~~~R~g~~li~~a----~kL~~~~~~~~~~~~~~~~~~ai-~~I~~aD~vmSlDn 290 (578)
||+|++|||||+|||++||+.+.|+.. +||+.++..+-+.. -+.+. .+..-.++...|..
T Consensus 304 ~H~AslPVAVni~C~a~R~~~~~i~~dg~~~~~~~~~~~~~~p~~----~~~~~~~~~~~v~L~tPl~~ 368 (536)
T PRK15389 304 RHGASCPVGIGVSCSADRNIKAKITRDGIFLEQLETNPARYLPEV----LREKLEGEVVKIDLNRPMAE 368 (536)
T ss_pred CcccCCceEEEcCchhhcCceEEECCCcceeeccCCCChHhChhh----hhhccCCceEEEEecCCCch
Confidence 999999999999999999999999874 34665554332110 11122 23555677777754
No 7
>PRK15392 putative fumarate hydratase; Provisional
Probab=100.00 E-value=2.4e-78 Score=650.81 Aligned_cols=284 Identities=26% Similarity=0.418 Sum_probs=259.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
.|.|+++|.++.+||+|+++|++.++|+|||||+++||+++|++| +.| ++++++|++||++||+ ++|||+|+| +
T Consensus 76 ~E~s~~~k~vl~~iL~Na~iA~~~~lP~CQDTG~aivfvk~G~~V-~~g--~~~~eai~eGV~~ay~--~~~LR~S~V-~ 149 (550)
T PRK15392 76 PQASSNDKYVALQLLRNAEVSAKGVLPNCQDTGTATIVASKGQQI-WTG--GNDAEALSKGIYSTFQ--ENNLRFSQN-A 149 (550)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEECCce-ecC--ccHHHHHHHHHHHHhc--cCCCchhhc-c
Confidence 489999999999999999999999999999999999999999999 564 5789999999999999 899999999 5
Q ss_pred Cc--cCccCCCCCCceEEEEEeeCCcEEEEEEEecCCCCcccccccc-----cCCchhHHHHHHHHhhccCCCCCCCcee
Q psy3773 81 PH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAM-----LNPSDSLVDWIMKTVPTMGAGWCPPGIL 153 (578)
Q Consensus 81 p~--~~r~ntg~n~p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~~-----l~p~~~v~~~v~~~v~~~G~~~CpP~~v 153 (578)
|+ |+|+|||||||++||+++++||+++|+++||||||||||+++| |+| ++|++||+|+|.++|+|||||++|
T Consensus 150 pl~~~~r~NTgdNtpa~I~~~~v~Gd~~~i~~~~KGgGSeN~s~l~~~tk~~L~P-egi~~FVle~V~~aG~~aCPP~~v 228 (550)
T PRK15392 150 PLDMYTEVNTQTNLPAQIDISAVAGDEYHFLCVNKGGGSANKAALYQETKSLLQP-EKLTAFLIEKMKSLGTAACPPYHI 228 (550)
T ss_pred CCCccccccCCCCcccEEEEEEcCCCEEEEEEEecCCCcccHHHHHhhccccCCH-HHHHHHHHHHHHhCCCCCCCCcEE
Confidence 64 4999999999999999999999999999999999999999996 888 899999999999999999999999
Q ss_pred EEEEcC-CHHHHHHHHHHHhccccccccccccCCC----hhhHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhcccccc
Q psy3773 154 GIGIGG-TPEKAMLMAKKVLMQDINMNSIIKNGPK----NKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTH 228 (578)
Q Consensus 154 gvGiGg-t~~~a~~laK~al~r~~~~~~~~~~~~~----~~~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p~h 228 (578)
|||||| |+|+|++|||+|++|++| .++++||+ |++++||+|+++++|++||||| |||++|+++|+|+.+|+|
T Consensus 229 GVGIGG~s~e~a~~laK~Al~R~~D--~l~~~~~~~g~~~r~aeLE~eLle~iN~lGIGpq-~GGk~taldV~Ie~~p~H 305 (550)
T PRK15392 229 AFVVGGLSADQTLKVAKLASTKYYD--NLPTSGNEQGQAFRDIELEKVLLEASQQFGIGAQ-FGGKYFAHDIRVIRLPRH 305 (550)
T ss_pred EEEECCCCHHHHHHHHHHHhhCCcc--cccCCCcccCCChHHHHHHHHHHHHHhhhCcCcc-cCCceEEEEEEEeEcccc
Confidence 999999 999999999999999777 67799999 9999999999999999999999 999999999999999999
Q ss_pred ccCCceEEeccccccccceEEEeee----eecccCCCCCccccccchhHHHhheeeeeecccChHHHHHHhcc
Q psy3773 229 AASKPVAIIPNCAATRHGFLLFWIS----IKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAGT 297 (578)
Q Consensus 229 ~a~~pvav~~~C~~~R~g~~li~~a----~kL~~~~~~~~~~~~~~~~~~ai~~I~~aD~vmSlDnVla~~g~ 297 (578)
+||+||+||+|||++||+.+.|++. ++|+.+|.++.+......+ --..+-.|+...|+.|+.-+.-
T Consensus 306 ~AslPVaV~v~C~A~R~~~~~i~~dG~~~e~l~~~p~~~~p~~~~~~~---~~~~~~i~L~~Pl~~~~~~l~~ 375 (550)
T PRK15392 306 GGSCPIAMALSCSADRNIKAKINKHGIWLEKLEHNPGQYIPASLREEN---HAQHVQLDLNRPLRDVMQDLAR 375 (550)
T ss_pred ccCCceEEEcCchhhcceeEEECCCcccchhhhhChhhcCcchhhhcc---CCceEEEEecCCCChhHHHHhc
Confidence 9999999999999999999999984 6999998877543211111 1236678999999988877554
No 8
>PLN00133 class I-fumerate hydratase; Provisional
Probab=100.00 E-value=6.5e-78 Score=648.97 Aligned_cols=283 Identities=29% Similarity=0.376 Sum_probs=258.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
.|+|+++|.++.+||+|+++|++.++|+|||||+++||+|+|++|++. ++++++|++||++||+ ++|||+|+|++
T Consensus 113 ~E~s~~~k~vl~~iL~Na~iAa~~~lP~CQDTG~aivfvk~G~~V~~~---g~leeai~eGV~~ay~--~~~LR~S~V~p 187 (576)
T PLN00133 113 PEASDNDRFVALELLKNANIAAGRVLPGCQDTGTAIVMGKRGQRVLTD---GEDEEHLSRGVYDAYT--DTNLRYSQVAP 187 (576)
T ss_pred cccCHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEeCCCcCcC---chHHHHHHHHHHHHhc--cCCCcccccCC
Confidence 489999999999999999999999999999999999999999999976 4699999999999999 89999999976
Q ss_pred C-ccCccCCCCCCceEEEEEeeCCcEEEEEEEecCCCCccccccc-----ccCCchhHHHHHHHHhhccCCCCCCCceeE
Q psy3773 81 P-HFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFA-----MLNPSDSLVDWIMKTVPTMGAGWCPPGILG 154 (578)
Q Consensus 81 p-~~~r~ntg~n~p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~-----~l~p~~~v~~~v~~~v~~~G~~~CpP~~vg 154 (578)
| ||+|+|||||||++||+++++||+++|+++||||||||+|+++ ||+| ++|++||+|+|.++|+|||||++||
T Consensus 188 ~~m~~r~NTgdNtPa~I~~~~v~Gd~~~i~~~~KGGGSeN~s~l~q~tk~mL~P-~gi~~FVle~V~~aG~~aCPP~~vG 266 (576)
T PLN00133 188 LDMFEEKNTGTNLPAQIDLYAAKGDEYHFQFIAKGGGSANKTFLYQQTKALLNE-GSLEAFLEEKIKTIGTSACPPYHLA 266 (576)
T ss_pred CcccceecCCCCcceEEEEEEcCCCEEEEEEEecCCCccCHHHHHhhhhhcCCH-HHHHHHHHHHHHhcCCCCCCCceEE
Confidence 5 4799999999999999999999999999999999999999999 9999 6999999999999999999999999
Q ss_pred EEEcCC-HHHHHHHHHHHhccccccccccccC--CChh-----hHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhcccc
Q psy3773 155 IGIGGT-PEKAMLMAKKVLMQDINMNSIIKNG--PKNK-----IEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYP 226 (578)
Q Consensus 155 vGiGgt-~~~a~~laK~al~r~~~~~~~~~~~--~~~~-----~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p 226 (578)
|||||| +|+|+++||+|++|++| ++| ++|+ +++||+|+++++|++||||| |||++|+++|+|+.+|
T Consensus 267 VGIGGtsaE~a~~laK~A~~r~ld-----~~~~~~~~~~~~~r~aelE~eLle~iN~lGIGpq-fGGk~taldV~Ie~~p 340 (576)
T PLN00133 267 IVIGGLSAEQNLKTVKLASTRYYD-----TLPTSGNALGRAFRDLEWEEKILKMTRGLGIGAQ-FGGKYFCHDVRVIRLP 340 (576)
T ss_pred EEECCChHHHHHHHHHHHhhCccc-----cccCCCCccccchHHHHHHHHHHHHHhhcCcCcc-cCCceEEEEEEEeEcc
Confidence 999998 99999999999999999 655 6665 88999999999999999999 9999999999999999
Q ss_pred ccccCCceEEeccccccccceEEEeee----eecccCCCCCccccccchhHHHhheeeeeecccChHHHHHHhccc
Q psy3773 227 THAASKPVAIIPNCAATRHGFLLFWIS----IKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTA 298 (578)
Q Consensus 227 ~h~a~~pvav~~~C~~~R~g~~li~~a----~kL~~~~~~~~~~~~~~~~~~ai~~I~~aD~vmSlDnVla~~g~a 298 (578)
+|+||+||+||+|||++||+.+.|++. ++|+.++.++-+......+ --..+-.|+..+++.|++.+.--
T Consensus 341 rH~AslPVaV~v~C~A~R~~~~~I~~dG~~~e~l~~~p~~~~p~~~~~~~---~~~~~~idl~~p~~~~~~~l~~l 413 (576)
T PLN00133 341 RHGASCPVGIGVSCSADRQALGKITKDGVFLEALETDPSKYLPDVTEDSL---SDDVVKVDLNRPMSEIRETLSAH 413 (576)
T ss_pred ccccCCceEEEccchhhcceeEEECCCcccccccCCCChhhChhhhhhcc---CCCeEEEECCCCcchHHHHHhhC
Confidence 999999999999999999999999984 5899988776432111111 12467789999999998876543
No 9
>PTZ00226 fumarate hydratase; Provisional
Probab=100.00 E-value=9.8e-78 Score=650.52 Aligned_cols=284 Identities=29% Similarity=0.382 Sum_probs=258.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
.|+|+++|++|.+||+|+++|++.++|+|||||+|+||+|+|++|++. ++++++|++||++||+ ++|||+|+|++
T Consensus 106 ~E~s~~~k~vl~~iL~Na~iA~~~~lP~CQDTG~aivfvk~G~~v~~~---g~l~eai~eGV~~ay~--~~~LR~S~v~p 180 (570)
T PTZ00226 106 PEASDNDRFVAMTLLKNACIAAGRVLPGCQDTGTAIVLGKRGELIWTG---GEDEKALSKGVYNAYT--NRNLRYSQLAP 180 (570)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCccCC---chHHHHHHHHHHHHhc--cCCcchhhcCC
Confidence 478999999999999999999999999999999999999999999986 4699999999999999 89999999976
Q ss_pred C-ccCccCCCCCCceEEEEEeeCCcEEEEEEEecCCCCccccccc-----ccCCchhHHHHHHHHhhccCCCCCCCceeE
Q psy3773 81 P-HFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFA-----MLNPSDSLVDWIMKTVPTMGAGWCPPGILG 154 (578)
Q Consensus 81 p-~~~r~ntg~n~p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~-----~l~p~~~v~~~v~~~v~~~G~~~CpP~~vg 154 (578)
| ||+|+|||||||++||+++++||+++|+++||||||||||+++ ||+| ++|++||+|+|+++|++||||++||
T Consensus 181 l~m~~r~NTgdNtPa~I~~~~v~Gd~~~i~~~~KGGGSeNks~l~q~tk~mL~P-~~i~~fVle~V~~~G~~aCPP~~vG 259 (570)
T PTZ00226 181 LDMFDEKNTGCNLPAQIDLYATPGNEYEFLFIAKGGGSANKTFLYQQTKSLLNP-KSLRKFLEEKIKTIGTSACPPYHLA 259 (570)
T ss_pred CccccccCCCCCcceEEEEEecCCCEEEEEEEecCCCcccHHHHHhhcccccCH-HHHHHHHHHHHHhcCCCCCCCceEE
Confidence 5 3799999999999999999999999999999999999999999 9999 7999999999999999999999999
Q ss_pred EEEcCC-HHHHHHHHHHHhccccccccccccC--CChh-----hHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhcccc
Q psy3773 155 IGIGGT-PEKAMLMAKKVLMQDINMNSIIKNG--PKNK-----IEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYP 226 (578)
Q Consensus 155 vGiGgt-~~~a~~laK~al~r~~~~~~~~~~~--~~~~-----~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p 226 (578)
|||||| +|+|++|||+|++|++| ++| ++|. +++||+|+++++|++||||| |||++|+++|+|+++|
T Consensus 260 VGIGGts~E~a~~laK~Al~r~ld-----~~~~~~~~~~~~~r~a~LE~eLle~iN~lGIGpq-fGGk~taldV~I~~~p 333 (570)
T PTZ00226 260 VVIGGLSAEMTLKTVKLASCRYYD-----SLPTSGDEYGRAFRDLEWEEIILEKTQNIGIGAQ-FGGKYFAHDVRVIRLP 333 (570)
T ss_pred EEECCCHHHHHHHHHHHHhhCccc-----ccCCCCCccccchHHHHHHHHHHHHHhhhCcCcc-cCCCcEEEEEEEeecC
Confidence 999999 99999999999999999 555 6665 99999999999999999999 9999999999999999
Q ss_pred ccccCCceEEeccccccccceEEEeee----eecccCCCCCccccccchhHHHhheeeeeecccChHHHHHHhccc
Q psy3773 227 THAASKPVAIIPNCAATRHGFLLFWIS----IKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTA 298 (578)
Q Consensus 227 ~h~a~~pvav~~~C~~~R~g~~li~~a----~kL~~~~~~~~~~~~~~~~~~ai~~I~~aD~vmSlDnVla~~g~a 298 (578)
+|+||+||+||+||||+||+.+.|++. ++|+.++.++-+......... .+.+-.|+...|+.++.-+---
T Consensus 334 rH~ASlPVaV~v~C~A~R~~~~~I~~dG~~~e~l~~~p~~~~p~~~~~~~~~--~~~~~~~L~~Pl~~~~e~l~~l 407 (570)
T PTZ00226 334 RHGASCPIGIGVSCSADRQILAKINKDGVYLEQLEHDPAQYLPDITEDDLSK--TPVVKIDLNQPMEEILKQLSKY 407 (570)
T ss_pred CcccCCceEEEcCchhhcCceEEECCCcceeeccCCCchHhChhhhhcccCC--CceEEEEecCCCchhHHHHhcC
Confidence 999999999999999999999999994 589998876643211111101 1567789999999887776543
No 10
>PRK15390 fumarate hydratase FumA; Provisional
Probab=100.00 E-value=2e-77 Score=645.72 Aligned_cols=283 Identities=30% Similarity=0.399 Sum_probs=254.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
.|+|+++|++|++||+|+++|++.++|+|||||+|+||+|+|++|+ .| ++++++|++||++||+ +.|||+|+| +
T Consensus 77 ~E~s~~~k~vl~~lL~Na~iA~~~~~P~CQDTG~~ivfv~~G~~v~-~g--~~~~eai~eGV~~ay~--~~~LR~S~v-~ 150 (548)
T PRK15390 77 PEASENDKYVALQFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVW-TG--GGDEAALARGVYNTYI--EDNLRYSQN-A 150 (548)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEEECCCCC-CC--chHHHHHHHHHHHHhc--cCCcchhhc-C
Confidence 4899999999999999999999999999999999999999999998 54 5799999999999999 899999999 5
Q ss_pred Cc--cCccCCCCCCceEEEEEeeCCcEEEEEEEecCCCCccccccc-----ccCCchhHHHHHHHHhhccCCCCCCCcee
Q psy3773 81 PH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFA-----MLNPSDSLVDWIMKTVPTMGAGWCPPGIL 153 (578)
Q Consensus 81 p~--~~r~ntg~n~p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~-----~l~p~~~v~~~v~~~v~~~G~~~CpP~~v 153 (578)
|+ |+|+|||||||++||+++++||+++|+++||||||||+|+++ ||+|+ .|++||+|+|+++|+|||||++|
T Consensus 151 pl~~~~r~NTgdNtpa~I~~~~v~gd~~~i~~~~KGGGSeN~s~l~~~tk~mL~p~-~i~~FV~e~V~~~G~~aCPP~~v 229 (548)
T PRK15390 151 PLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPG-KLKNYLVEKMRTLGTAACPPYHI 229 (548)
T ss_pred CCCccccccCCCCcccEEEEEEcCCCEEEEEEEecCCCcccHHHHhhhccccCCHH-HHHHHHHHHHHhcCCCCCCCceE
Confidence 64 599999999999999999999999999999999999999997 99997 49999999999999999999999
Q ss_pred EEEEcCCHHHHH----HHHHHHhccccccccccccCCChhhHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhccccccc
Q psy3773 154 GIGIGGTPEKAM----LMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHA 229 (578)
Q Consensus 154 gvGiGgt~~~a~----~laK~al~r~~~~~~~~~~~~~~~~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p~h~ 229 (578)
|||||||+|+|+ +|||+|++|+++ ......+++|++++||+|+++++|++||||| |||++|+++|+|+++|+|+
T Consensus 230 GVGIGGt~~~a~~k~~kLAK~allr~l~-t~gn~~~~~~r~a~lE~eLLe~iN~lGIGpq-fGGk~taldV~Ie~~prH~ 307 (548)
T PRK15390 230 AFVIGGTSAETNLKTVKLASAKYYDELP-TEGNEHGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHG 307 (548)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhccCC-ccccccCCchHHHHHHHHHHHHHhhhCcCcc-cCCceEEEEEEEeEccccc
Confidence 999999999996 999999999998 1111234999999999999999999999999 9999999999999999999
Q ss_pred cCCceEEeccccccccceEEEeee----eecccCCCCCccccccchhHHHhheeeeeecccChHHHHHHh
Q psy3773 230 ASKPVAIIPNCAATRHGFLLFWIS----IKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIA 295 (578)
Q Consensus 230 a~~pvav~~~C~~~R~g~~li~~a----~kL~~~~~~~~~~~~~~~~~~ai~~I~~aD~vmSlDnVla~~ 295 (578)
||+||+||+|||++||+.+.|++- ++|+.++.++-+....... -...+-.|+...++.+++-+
T Consensus 308 AslPVaV~v~C~A~R~~~~~I~~dg~~~e~le~~p~~~~p~~~~~~~---~~~~~~i~L~~Pl~e~~~~l 374 (548)
T PRK15390 308 ASCPVGMGVSCSADRNIKAKINRQGIWIEKLEHNPGKYIPEELRKAG---EGEAVRVDLNRPMKEILAQL 374 (548)
T ss_pred cCCceEEEcCchhhcceeEEECCCcchHHhhccCChhhchhhhhhcc---CCceEEEEccCCCchHHHHH
Confidence 999999999999999999999994 5999988775432111111 12467789999999887665
No 11
>PRK15391 fumarate hydratase FumB; Provisional
Probab=100.00 E-value=3.2e-76 Score=636.42 Aligned_cols=284 Identities=29% Similarity=0.388 Sum_probs=254.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3773 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (578)
Q Consensus 1 ~E~~~~ak~~l~~il~N~~iA~~~~~P~CQDTG~~~~fv~~G~~~~~~g~~~~l~~~i~~gv~~a~~~~~~~lR~s~v~~ 80 (578)
.|+|+++|++|.+||+|+++|++.++|+|||||+++||+++|++|++. ++++++|++||++||+ +.|||+|+| +
T Consensus 77 ~E~s~~~k~vl~~lL~Na~iAa~~~lP~CQDTG~aivfvk~G~~v~~~---g~~~eai~~GV~~ay~--~~~LR~S~V-~ 150 (548)
T PRK15391 77 PEASENDKYVALQFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQRVWTG---GGDEEALSKGVYNTYI--EDNLRYSQN-A 150 (548)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEECCCcccC---chHHHHHHHHHHHHhc--cCCcchhhc-C
Confidence 489999999999999999999999999999999999999999999865 4699999999999999 799999999 5
Q ss_pred Cc--cCccCCCCCCceEEEEEeeCCcEEEEEEEecCCCCccccccc-----ccCCchhHHHHHHHHhhccCCCCCCCcee
Q psy3773 81 PH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFA-----MLNPSDSLVDWIMKTVPTMGAGWCPPGIL 153 (578)
Q Consensus 81 p~--~~r~ntg~n~p~~i~~~~v~gd~~~i~~~~KGgGsen~s~~~-----~l~p~~~v~~~v~~~v~~~G~~~CpP~~v 153 (578)
|+ |+|+|||||||++||+++++||+++|+++||||||||+|+++ ||+|+ .|++||+|+|+++|+|||||++|
T Consensus 151 pl~~~~r~NTgdNtpa~I~~~~v~Gd~~~i~~~~KGGGSeNks~l~~~tk~mL~p~-~i~~FV~e~V~~~G~~aCPP~~v 229 (548)
T PRK15391 151 ALDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLTPG-KLKNFLVEKMRTLGTAACPPYHI 229 (548)
T ss_pred CCCccccccCCCCcccEEEEEEcCCCEEEEEEEecCCCcccHHHHhhhccccCCHH-HHHHHHHHHHHhcCCCCCCCceE
Confidence 64 599999999999999999999999999999999999999997 99996 59999999999999999999999
Q ss_pred EEEEcCCHHHH-HHHHHHH---hccccccccccccCCChhhHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhccccccc
Q psy3773 154 GIGIGGTPEKA-MLMAKKV---LMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHA 229 (578)
Q Consensus 154 gvGiGgt~~~a-~~laK~a---l~r~~~~~~~~~~~~~~~~~~Le~el~~~~n~lGiGa~glgg~~t~l~v~i~~~p~h~ 229 (578)
|||||||+|+| ++|||+| ++|+++ .+...++++|++++||+|+++++|++||||| |||++|+++|+|+++|+|+
T Consensus 230 GVGIGGt~~~a~~~laK~A~~~llr~l~-~~~n~~g~~~r~a~LE~eLle~iN~lGIGpq-~GGk~taldV~I~~~p~H~ 307 (548)
T PRK15391 230 AFVIGGTSAETNLKTVKLASAHYYDELP-TEGNEHGQAFRDVQLEQELLEEAQKLGLGAQ-FGGKYFAHDIRVIRLPRHG 307 (548)
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhhcccC-cccccCCCchHHHHHHHHHHHHHhhcCcCcc-cCCCcEEEEEEEeecCCcc
Confidence 99999999999 9999999 677887 1122345999999999999999999999999 9999999999999999999
Q ss_pred cCCceEEeccccccccceEEEeee----eecccCCCCCccccccchhHHHhheeeeeecccChHHHHHHhc
Q psy3773 230 ASKPVAIIPNCAATRHGFLLFWIS----IKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAG 296 (578)
Q Consensus 230 a~~pvav~~~C~~~R~g~~li~~a----~kL~~~~~~~~~~~~~~~~~~ai~~I~~aD~vmSlDnVla~~g 296 (578)
||+||+||+|||++||+.+.|++. ++|+.++.++-+....... --..+-.|+...++.+++-+-
T Consensus 308 AslPVaV~v~C~A~R~~~~~i~~dG~~~e~le~~p~~~~p~~~~~~~---~~~~~~i~L~~P~~e~~~~l~ 375 (548)
T PRK15391 308 ASCPVGMGVSCSADRNIKAKINREGIWIEKLEHNPGQYIPQELRQAG---EGEAVKVDLNRPMKEILAQLS 375 (548)
T ss_pred cCCceEEEccchhhcceeEEECCCcceeeccCCCchHhChhhhhhcc---CCCeEEEEcCCCChHHHHHHh
Confidence 999999999999999999999995 5999988776432111111 023566888889998876654
No 12
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=4.4e-42 Score=328.94 Aligned_cols=164 Identities=23% Similarity=0.393 Sum_probs=151.7
Q ss_pred hhheeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcC
Q psy3773 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQG 481 (578)
Q Consensus 402 ~~ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G 481 (578)
++++.+|+|++|||+|||||++|+||+|++|.+.+.+|+..+.+...++++++++|.|++.++++|+||+|||+||+|+|
T Consensus 3 ~~~v~vG~I~~~hGlkGevkv~~~td~p~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~lv~f~gi~dr~~Ae~l~g 82 (169)
T PRK14591 3 QDFVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKVYIKLANINNADTAKKYVN 82 (169)
T ss_pred CcEEEEEEEeCCccccEEEEEEECCCCHHHhcCCCeEEEEecCCCceeEEEEEEEEEECCEEEEEEcCCCCHHHHHHhcC
Confidence 34899999999999999999999999999999988888864332345688999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeecccc
Q psy3773 482 YYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKI 561 (578)
Q Consensus 482 ~~l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~ 561 (578)
++||++++++|++ ++|||||+|||||+|+|++|+.+|+|++|+++||||+|+|+. +++|+||||+++
T Consensus 83 ~~l~v~~~~lp~l-~e~E~Y~~dLiG~~V~d~~g~~lG~V~~v~~~ga~dll~I~~------------~~ke~LIP~~~~ 149 (169)
T PRK14591 83 ALIGVPKRALPQL-AEDEVYFKDLIGCSVKNINNDSFGVVVDIIETGANEVLVCKE------------DNSEYLIPYVKQ 149 (169)
T ss_pred CEEEEEHHHCCCC-CCCCEEeeeecCcEEEeCCCCEEEEEEEEeecCCceEEEEEc------------CCeEEEEeChhh
Confidence 9999999999994 999999999999999999999999999999999999999984 257999999999
Q ss_pred cceeeecCCCEEEEeCC
Q psy3773 562 FIKNVDIIKKKIIVDWD 578 (578)
Q Consensus 562 fV~~VDle~k~I~V~l~ 578 (578)
||++||+++|+|+|+|+
T Consensus 150 ~V~~iD~e~k~I~v~~~ 166 (169)
T PRK14591 150 YIVSEDLNSKKIVVDWE 166 (169)
T ss_pred eeeeEEcCCCEEEEecC
Confidence 99999999999999985
No 13
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-41 Score=320.93 Aligned_cols=165 Identities=32% Similarity=0.518 Sum_probs=151.9
Q ss_pred hhheeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcC
Q psy3773 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQG 481 (578)
Q Consensus 402 ~~ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G 481 (578)
++++.+|+|+++|||+|||||+|+||+|+.|...+.+++..+ +...+.++++++|.|++.++++|+||+|||+|++|+|
T Consensus 5 ~~~~~vGkI~~t~Gi~GevrV~s~Td~~~~~~~~~~~~~~~~-~~~~~~~~v~~~r~~~~~~i~kf~gi~dr~~ae~l~G 83 (174)
T COG0806 5 ENLLLVGKIVSTHGIRGEVRVKSFTDFPESLFDYGPWLLLKP-GGEWQELTVESVRKHKNLLILKFKGIDDRNAAEALKG 83 (174)
T ss_pred cceEEEEEEEecccccEEEEEEECCCCHHHhcCcCcEEEecC-CCceEEEEEEEeeecCCEEEEEeCCCCCHHHHHHhcC
Confidence 489999999999999999999999999987777776666654 3455789999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeecccc
Q psy3773 482 YYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKI 561 (578)
Q Consensus 482 ~~l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~ 561 (578)
+++|++++++|++ +||||||+||+||+|++++|+.||+|++|+++||||+|+|+... +.+++||||+++
T Consensus 84 ~~i~v~~~~~p~l-~EdEfY~~DLiG~~V~~~~g~~lG~V~~i~~~Ga~Dvl~V~~~~----------~~k~~LIPf~~~ 152 (174)
T COG0806 84 YEIFVDRSELPEL-EEDEFYYHDLIGLEVVTEDGELLGKVTEILETGANDVLVVKAKG----------GKKERLIPFVDA 152 (174)
T ss_pred cEEEEEHHHCCCC-CCCcEEeEeecCcEEEcCCCcEEEEEEEEeeCCCccEEEEEecC----------CCcEEEecchHh
Confidence 9999999999995 99999999999999999999999999999999999999999521 357999999999
Q ss_pred cceeeecCCCEEEEeCC
Q psy3773 562 FIKNVDIIKKKIIVDWD 578 (578)
Q Consensus 562 fV~~VDle~k~I~V~l~ 578 (578)
||++||+++|+|.++|+
T Consensus 153 ~V~~Vd~~~k~I~v~~~ 169 (174)
T COG0806 153 VVKEVDLEAKKIEVDPD 169 (174)
T ss_pred eeeEEecCCCEEEEecc
Confidence 99999999999999985
No 14
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=9.4e-41 Score=320.59 Aligned_cols=165 Identities=30% Similarity=0.531 Sum_probs=150.9
Q ss_pred chhhheeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhh
Q psy3773 400 TVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKL 479 (578)
Q Consensus 400 tv~~ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L 479 (578)
+..+++.+|+|++|||+|||||++|+||+|++|.....+|+ .. ....++++++++|.|++.+++||+||+|||+|++|
T Consensus 3 ~~~~~v~iG~i~~~hGlkGevkv~~~td~p~~~~~~~~~~~-~~-~~~~~~~~v~~~~~~~~~~lvkf~gi~~~~~Ae~l 80 (172)
T PRK00122 3 KPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLL-GK-GGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEAL 80 (172)
T ss_pred CccceEEEEEEECCCcccEEEEEEEecCCHHHHcCcCcEEE-cc-CCceEEEEEEEEEEECCEEEEEECCCCCHHHHHHh
Confidence 44689999999999999999999999999987766666776 33 22467899999999999999999999999999999
Q ss_pred cCCEEEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeecc
Q psy3773 480 QGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI 559 (578)
Q Consensus 480 ~G~~l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv 559 (578)
+|++||++++++|++ ++|||||+|||||+|+|++|+.+|+|++|+++||||+|+|+.. +++|+||||+
T Consensus 81 ~g~~l~i~~~~lp~l-~~~e~y~~dLiG~~V~d~~g~~lG~V~~v~~~~a~dll~I~~~-----------~~~e~liP~~ 148 (172)
T PRK00122 81 KGCELFVPRSQLPEL-EEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLKD-----------KKEERLIPFV 148 (172)
T ss_pred CCCEEEEEHHHCCCC-CCCCEEHHHhCCcEEEeCCCcEEEEEEEEccCCCceEEEEECC-----------CCCEEEEecC
Confidence 999999999999995 9999999999999999999999999999999999999999743 3679999999
Q ss_pred cccceeeecCCCEEEEeCC
Q psy3773 560 KIFIKNVDIIKKKIIVDWD 578 (578)
Q Consensus 560 ~~fV~~VDle~k~I~V~l~ 578 (578)
++||++||+++++|+|+||
T Consensus 149 ~~~V~~iD~~~~~I~v~~p 167 (172)
T PRK00122 149 EEVVKEVDLEAKRITVDWP 167 (172)
T ss_pred hhhCCEEECCCCEEEEeCC
Confidence 9999999999999999986
No 15
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.7e-40 Score=318.33 Aligned_cols=163 Identities=25% Similarity=0.402 Sum_probs=149.2
Q ss_pred eeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCC-CCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCE
Q psy3773 405 ITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPN-SLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYY 483 (578)
Q Consensus 405 l~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~-~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G~~ 483 (578)
+.+|+|++|||+||||||+|+||+|++|.....+|+..++ ....++++++++|.|++.++++|+||+|||+|++|+|++
T Consensus 1 ~~vG~I~~~hGlkGevkv~~~td~pe~~~~~~~~~~~~~~~~~~~~~~~v~~~r~~~~~~lv~f~gi~~~e~Ae~L~g~~ 80 (171)
T PRK14590 1 ISLGQLGKPFGIKGWLRVNVRGETLHTLKAPATLKLGKEDPQFPESEIALLEIRPHGGKFLVRFEGYDTPEEAVKWRGGS 80 (171)
T ss_pred CeEEEEeCCEeeCeEEEEEEccCCHHHhcCCCEEEEecCCCCCCeeEEEEEEEEEECCEEEEEECCCCCHHHHHHhcCCE
Confidence 4689999999999999999999999999999888886432 223568999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeE-EEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeeccccc
Q psy3773 484 LKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLG-TVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIF 562 (578)
Q Consensus 484 l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG-~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~f 562 (578)
||++++++|++.++|||||+|||||+|+|++|+.+| +|++|+++||||+|+|+.. +++++||||+++|
T Consensus 81 l~i~~~~lp~l~~e~e~y~~dLiG~~V~d~~g~~lGG~V~~v~~~~a~dllvV~~~-----------~~ke~LiP~v~~~ 149 (171)
T PRK14590 81 LFLPQELLPKIETKGEFYSEDLIGLQAIDETGKPLNWKLTDVQDNPAHPILVFIKG-----------EGEEILIPFLNVF 149 (171)
T ss_pred EEEEHHHCCCCCCCCCEEhHHccCcEEEeCCCCEeeeEEEEEecCCCceEEEEECC-----------CCCEEEEechHHh
Confidence 999999999953499999999999999999999997 9999999999999999743 3679999999999
Q ss_pred ceeeecCCCEEEEeCC
Q psy3773 563 IKNVDIIKKKIIVDWD 578 (578)
Q Consensus 563 V~~VDle~k~I~V~l~ 578 (578)
|++||+++|+|+|++|
T Consensus 150 V~~iD~~~k~I~v~~p 165 (171)
T PRK14590 150 VGDLDLEKQTIVLIQP 165 (171)
T ss_pred cceEecCCCEEEEECC
Confidence 9999999999999986
No 16
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=2.3e-40 Score=315.88 Aligned_cols=159 Identities=26% Similarity=0.324 Sum_probs=144.1
Q ss_pred hheeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEe-CCEEEEEecCCCCHHHHHhhcC
Q psy3773 403 HLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNH-GNYVLANLYGITDRNLATKLQG 481 (578)
Q Consensus 403 ~ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~-~~~~ivkfegIddre~Ae~L~G 481 (578)
+++.+|+|++|||+|||||++|+||+|++|.....+++. ..+++++..|.+ ++.++++|+||+|||+|++|+|
T Consensus 1 ~~v~iG~I~~~hGlkGevkv~~~td~p~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~lv~f~gi~~~~~Ae~l~g 74 (165)
T PRK14592 1 DLICLGVITSPHGIKGHVKIKTFTEDPENISAYGKLTDG------SNTYKISVVSVIGANLVIAKISGINSRTEAELLRN 74 (165)
T ss_pred CEEEEEEEECCCccCEEEEEEECCCCHHHhcCCceEEEC------CEEEEEEEEEEecCCEEEEEEcCCCCHHHHHHhcC
Confidence 478999999999999999999999999999888766642 135678777776 5788999999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeecccc
Q psy3773 482 YYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKI 561 (578)
Q Consensus 482 ~~l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~ 561 (578)
+.||++++++|++ ++|||||+|||||+|+|++|+.+|+|++|+++||||+|+|+.+. +++|+||||+++
T Consensus 75 ~~l~v~~~~lp~l-~e~e~y~~dLiG~~V~~~~g~~lG~V~~v~~~ga~dvlvI~~~~----------~~ke~LIP~v~~ 143 (165)
T PRK14592 75 KKLYVERSKLPNL-NEDEFYQSDLIGMEVKLEDNTIYGYIKKIYNFGSCDIIEISLTS----------TKKSTMLPFTKE 143 (165)
T ss_pred CEEEEEHHHCCCC-CCCCEEHHHcCCcEEEcCCCCEEEEEEEEccCCCccEEEEEECC----------CCcEEEEecchh
Confidence 9999999999994 99999999999999999999999999999999999999998321 357999999999
Q ss_pred cceeeecCCCEEEEeCC
Q psy3773 562 FIKNVDIIKKKIIVDWD 578 (578)
Q Consensus 562 fV~~VDle~k~I~V~l~ 578 (578)
||++||+++|+|+|+||
T Consensus 144 ~V~~IDle~k~I~v~~p 160 (165)
T PRK14592 144 IFPHINVKERYIILVPP 160 (165)
T ss_pred cccEEECCCCEEEEECc
Confidence 99999999999999987
No 17
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=100.00 E-value=7.3e-40 Score=312.40 Aligned_cols=163 Identities=29% Similarity=0.504 Sum_probs=147.6
Q ss_pred heeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCE
Q psy3773 404 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYY 483 (578)
Q Consensus 404 ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G~~ 483 (578)
++.+|+|++|||+|||+|++++||+|++|.....+++..+. ...++++++++|.+++.++++|+||+|||+|++|+|++
T Consensus 1 ~v~iG~I~~~hGlkGevkv~~~td~p~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~lv~f~gi~~~~~Ae~L~g~~ 79 (165)
T TIGR02273 1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGS-KQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLE 79 (165)
T ss_pred CEEEEEEECCcccCEEEEEEEcCCCHHHHcCCCcEEEEcCC-CceEEEEEEEEEEECCEEEEEECCCCCHHHHHHhcCCE
Confidence 57899999999999999999999999877655556655433 24568999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeecccccc
Q psy3773 484 LKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFI 563 (578)
Q Consensus 484 l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~fV 563 (578)
||++++++|++ ++|||||+|||||+|+|++|+.+|+|++|+++||||+|+|+.. ++++|+||||+++||
T Consensus 80 l~i~~~~lp~l-~e~e~y~~dLiG~~V~d~~~~~lG~V~~v~~~~a~dll~V~~~----------~~~ke~liP~~~~fv 148 (165)
T TIGR02273 80 LFVPREALPEL-EEDEYYWTDLIGLEVVTEEGEELGKVVEILETGANDVLVVRSK----------KGKKEVLIPFVEEIV 148 (165)
T ss_pred EEEEHHHCCCC-CCCCEEhhHhCCcEEEcCCCcEEEEEEEEecCCCccEEEEEEC----------CCCcEEEEECchhhC
Confidence 99999999995 9999999999999999999999999999999999999999851 135799999999999
Q ss_pred eeeecCCCEEEEeCC
Q psy3773 564 KNVDIIKKKIIVDWD 578 (578)
Q Consensus 564 ~~VDle~k~I~V~l~ 578 (578)
++||+++++|+|+||
T Consensus 149 ~~ID~~~~~I~v~~p 163 (165)
T TIGR02273 149 KEIDLEKKIITVDWP 163 (165)
T ss_pred CEEeCCCCEEEEECC
Confidence 999999999999986
No 18
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.5e-39 Score=310.63 Aligned_cols=160 Identities=20% Similarity=0.304 Sum_probs=143.0
Q ss_pred heeeeeecccccccccEEEEEccCchhhhcc--CcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcC
Q psy3773 404 LITIGVVLRAYGIFGWILIKLFLDDKNIFFY--ARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQG 481 (578)
Q Consensus 404 ll~iG~I~~~hGlkGevkv~~~td~p~~f~~--~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G 481 (578)
++.+|+|++|||+||||||+|+||+|+.|.. ...+|+. +.+...++++++++|.|++.++++|+||+|||+|++|+|
T Consensus 1 ~~~iG~I~~~hGlkGevkV~~~td~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~r~~~~~~lvkf~gi~dr~~Ae~L~g 79 (166)
T PRK14594 1 MFVKGIILSSYGINGYAKVKSISNNFCDFINLKNNKLVLK-KSNCSSIEVKVEDVSLKNNSLLLKFEEFNAPEPIKPLIG 79 (166)
T ss_pred CEEEEEEECceeeeEEEEEEEccCCHHHhhcccCcEEEEe-cCCCcEEEEEEEEEEEECCEEEEEEcCCCCHHHHHHhcC
Confidence 3678999999999999999999998877643 3334544 333356789999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeecccc
Q psy3773 482 YYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKI 561 (578)
Q Consensus 482 ~~l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~ 561 (578)
++||++++++|++ ++|||||+|||||+|+| +|+.+|+|++|+++||||+|+|+. +++|+||||+++
T Consensus 80 ~~l~v~~~~lp~l-~edE~Y~~dLiG~~V~~-~g~~lG~V~~v~~~ga~dll~V~~------------~~ke~LIPfv~~ 145 (166)
T PRK14594 80 FELWVDDELASKL-EEGEYYFGKLIGYAIVN-DGKELGEVVSFFECLNSVLLEVKV------------GIKLFFVPFLSI 145 (166)
T ss_pred CEEEEEHHHCCCC-CCCcEeHhHccCeEEEE-CCEEEEEEEEEeeCCCcEEEEEEe------------CCEEEEEeChHh
Confidence 9999999999995 99999999999999999 499999999999999999999983 357999999999
Q ss_pred cceeeecCCCEEEEeCC
Q psy3773 562 FIKNVDIIKKKIIVDWD 578 (578)
Q Consensus 562 fV~~VDle~k~I~V~l~ 578 (578)
||++||+++|+|+|+++
T Consensus 146 ~V~~VD~~~k~I~v~~~ 162 (166)
T PRK14594 146 YLGDINRELKTIELKVL 162 (166)
T ss_pred eeeeEEcCCCEEEEEeH
Confidence 99999999999999974
No 19
>PRK14593 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=8e-39 Score=310.37 Aligned_cols=168 Identities=20% Similarity=0.225 Sum_probs=144.3
Q ss_pred hheeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCC----CCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHh
Q psy3773 403 HLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPN----SLKLFSIKILNKKNHGNYVLANLYGITDRNLATK 478 (578)
Q Consensus 403 ~ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~----~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~ 478 (578)
+|+.+|+|+++||+|||||++|+||+|++|.....+++.... .+..++++++++|.|++ +++|+||+|||+|++
T Consensus 3 ~~i~iG~I~~~hGikGevkv~~~td~pe~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r~~~~--~v~f~gi~dr~~Ae~ 80 (184)
T PRK14593 3 SMLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSCASSFKDYVIHSYEHAKN--LLFLETIHTPEKAKE 80 (184)
T ss_pred cEEEEEEEECCEeeeEEEEEEECCCCHHHhccCCEEEEcccccccccCCceEEEEEEEEeeCC--EEEEcCCCCHHHHHH
Confidence 589999999999999999999999999999887776654211 12356899999999987 589999999999999
Q ss_pred hcCCEEEEeCCCCC---CCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEE
Q psy3773 479 LQGYYLKISINDFP---KLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGIL 555 (578)
Q Consensus 479 L~G~~l~v~~~dlp---~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~L 555 (578)
|+|+.||++++++| + |++|||||+|||||+|++ +|+.||+|++|+++||||+|+|+.... ...+ ..++|+|
T Consensus 81 l~g~~l~i~~~~l~~lp~-l~edEyY~~dLiGl~V~~-~g~~lG~V~~v~~~ga~dvlvV~~~~~--~~~~--~~~ke~L 154 (184)
T PRK14593 81 LTNLGLFMSEAESKKLCV-LKEGEFFYCDLVGLSVVE-ENEILGKVIEIQRISQTDYFMVETTLS--LVEK--GLAKIFL 154 (184)
T ss_pred hcCCEEEEEHHHccccCC-CCCCcEEeehccCcEEEE-CCEEeEEEEEEccCCCceEEEEEeccc--cccC--CCCcEEE
Confidence 99999999999987 6 599999999999999998 599999999999999999999985200 0000 0237999
Q ss_pred eecccccceeeecCCCEEEEeCC
Q psy3773 556 IPFIKIFIKNVDIIKKKIIVDWD 578 (578)
Q Consensus 556 IPfv~~fV~~VDle~k~I~V~l~ 578 (578)
|||+++||++||+++|+|+|++|
T Consensus 155 IP~~~~~V~~VDle~k~I~v~~~ 177 (184)
T PRK14593 155 IPYRDFYIQEILLQDKKITTHNA 177 (184)
T ss_pred EeChhhhhceEecCCCEEEEeCh
Confidence 99999999999999999999986
No 20
>PRK13829 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.6e-36 Score=288.57 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=138.0
Q ss_pred hheeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCC
Q psy3773 403 HLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGY 482 (578)
Q Consensus 403 ~ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G~ 482 (578)
+++.+|+|++|||+|||||++ |+|+ |...+.+|+..+ + .++++++|.|++.++++|+||+|||+|++|+|+
T Consensus 2 ~~i~iG~I~~~hGikGevkv~---d~p~-~~~~~~~~~~~~-~----~~~v~~~r~~~~~~l~~f~gi~~r~~Ae~l~g~ 72 (162)
T PRK13829 2 RRTEIGRFGGPYGVQGGLKFR---GEPV-VLDLPRVYVEGL-G----WRAIERAERVGPELVLHLAGVTSREGAEALVGL 72 (162)
T ss_pred CEEEEEEEeCCeeecEEEEEe---cchH-hccCCEEEEcCC-C----EEEEEEEEEECCEEEEEECCCCCHHHHHHhcCC
Confidence 689999999999999999999 8899 878888887532 1 358999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeeccccc
Q psy3773 483 YLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIF 562 (578)
Q Consensus 483 ~l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~f 562 (578)
+||++++++|++ ++|||||+|||||+|+ ++|+.+|+|++|+++||||+|+|+..++. ..+.|++||||+++|
T Consensus 73 ~l~v~~~~lp~L-~e~EyY~~dLiG~~V~-~~g~~lG~V~~v~~~ga~dvlvV~~~~~~------~~~~k~~LIP~v~~~ 144 (162)
T PRK13829 73 RVYADDADLPPL-EEGSYYYHELRGLPVY-VDGEPLGEVVDVEDAGAQDLLVIRHVGGS------LRARATYFVPLQAPY 144 (162)
T ss_pred EEEEEHHHCCCC-CCCCEEehhccCeEEE-ECCEeeEEEEEEecCCCceEEEEEeCCCC------CccCceEEEccccce
Confidence 999999999994 9999999999999999 89999999999999999999999854210 001279999999999
Q ss_pred ceeeecCCCEEEEeCC
Q psy3773 563 IKNVDIIKKKIIVDWD 578 (578)
Q Consensus 563 V~~VDle~k~I~V~l~ 578 (578)
| |+++++|+|+||
T Consensus 145 V---~~~~~~I~v~~p 157 (162)
T PRK13829 145 V---RVELDGITADAI 157 (162)
T ss_pred E---EccCCEEEEeCC
Confidence 6 489999999986
No 21
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=2.5e-36 Score=287.03 Aligned_cols=147 Identities=23% Similarity=0.337 Sum_probs=136.1
Q ss_pred ccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCEEEEeCCCCCCCC
Q psy3773 416 IFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLL 495 (578)
Q Consensus 416 lkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G~~l~v~~~dlp~lL 495 (578)
|||||||+|+||+|++|.....+|+. .+ .++++++++|.|++.++++|+||+|||+|++|+|++||++++++|++
T Consensus 1 ikGevkv~~~td~p~~~~~~~~~~~~--~~--~~~~~v~~~r~~~~~~lv~f~gi~dr~~Ae~L~g~~l~i~~~~lp~l- 75 (161)
T PRK13828 1 VRGEVRLKSFTEDPLAIADYGPLTTE--DG--ARSFTVALARPAKDGLVARLKGVATREAAEALRGLELYVPRDRLPEL- 75 (161)
T ss_pred CcEEEEEEEcCCCHHHhccCCeEEEC--CC--CEEEEEEEEEEECCEEEEEECCCCCHHHHHHhcCCEEEEEHHHCCCC-
Confidence 69999999999999999888776643 22 25899999999999999999999999999999999999999999994
Q ss_pred CCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEe-CCccceehhccCCCcEEEeecccccceeeecCCCEEE
Q psy3773 496 SSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQ-SSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKII 574 (578)
Q Consensus 496 ~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~-~~~~~~~~~~~~~~ke~LIPfv~~fV~~VDle~k~I~ 574 (578)
++|||||+|||||+|+|++|+.+|+|++|+++||||+|+|+. . +++++||||+++||++||+++|+|+
T Consensus 76 ~e~e~y~~dLiG~~V~d~~g~~lG~V~~V~~~ga~dvlvV~~~~-----------~~ke~LIP~v~~~V~~VDl~~~~I~ 144 (161)
T PRK13828 76 DDDEFYHADLIGLAAVDTGGALLGRVKAVHNFGAGDILEIAPPG-----------GGPTLLLPFTRAVVPTVDLAAGRVV 144 (161)
T ss_pred CCCCEEhhhccCCEEEeCCCCEEEEEEEEccCCCccEEEEEECC-----------CCcEEEEeccccccCeEECCCCEEE
Confidence 999999999999999999999999999999999999999985 3 3579999999999999999999999
Q ss_pred EeCC
Q psy3773 575 VDWD 578 (578)
Q Consensus 575 V~l~ 578 (578)
|+||
T Consensus 145 v~~p 148 (161)
T PRK13828 145 ADPP 148 (161)
T ss_pred EeCC
Confidence 9987
No 22
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=99.91 E-value=8.4e-26 Score=223.24 Aligned_cols=143 Identities=18% Similarity=0.314 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhcc-hHHHHHHHHHHhhhhhccccccccCCceEEeccccccccceEEEeeeeecccCCCCC---c---
Q psy3773 192 ELRLELFNKINSLGI-GAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGFLLFWISIKLLSNDHNY---T--- 264 (578)
Q Consensus 192 ~Le~el~~~~n~lGi-Ga~glgg~~t~l~v~i~~~p~h~a~~pvav~~~C~~~R~g~~li~~a~kL~~~~~~~---~--- 264 (578)
+||+++|++++.+|+ ||+.+|+.++++++++.++|.. +.+ +|.+++|+++|+..+.++. +
T Consensus 21 ~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~~~~l---~~i----------GG~~Ll~~~~k~l~~~~~~~~~~~~~ 87 (215)
T TIGR03716 21 HLPEKQRKKALFYGLIGAYVFRFIALFLASFLIKFWWI---KAI----------GALYLLYLAIKHFRKKKKGKEDEEAE 87 (215)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----------HHHHHHHHHHHHHHhccccccccccc
Confidence 589999999999997 6999999999999999998852 111 5899999998887654321 1
Q ss_pred cccccchhHHHhheeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHH
Q psy3773 265 TIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSI 344 (578)
Q Consensus 265 ~~~~~~~~~~ai~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~ 344 (578)
..+..++||+|+.||+++|++||+|||+|++|+++ |++++++|+++|+|.|+++|++++++|||||+++|+|++
T Consensus 88 ~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~------~~~ii~~g~~~sIl~lr~~s~~l~~li~r~p~L~~~~~~ 161 (215)
T TIGR03716 88 KKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSG------QFWVVFLGGIIGILIMRFAATIFVKLLERFPELETAAFL 161 (215)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhhHHHHHHhcc------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345689999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred HHHHhhhcc
Q psy3773 345 LLGYLSATD 353 (578)
Q Consensus 345 ~L~~i~~~~ 353 (578)
+|+|+|+.+
T Consensus 162 iL~~ig~kL 170 (215)
T TIGR03716 162 LIGWIGVKL 170 (215)
T ss_pred HHHHHHHHH
Confidence 999999998
No 23
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=99.91 E-value=2.9e-25 Score=215.22 Aligned_cols=144 Identities=30% Similarity=0.393 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHhhhhhccc-cccccCCceEEeccccccccceEEEeeeeecccCCC-------
Q psy3773 191 EELRLELFNKINSLGI-GAQGMGGLSTVLDVKIMMY-PTHAASKPVAIIPNCAATRHGFLLFWISIKLLSNDH------- 261 (578)
Q Consensus 191 ~~Le~el~~~~n~lGi-Ga~glgg~~t~l~v~i~~~-p~h~a~~pvav~~~C~~~R~g~~li~~a~kL~~~~~------- 261 (578)
+++|+++|+++..+|+ ||+++|..++++++++.+. |... .=+|.+++|+++|+..+..
T Consensus 23 ~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~-------------~igG~~Ll~~a~k~~~~~~~~d~~~~ 89 (183)
T PF03741_consen 23 RKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWIL-------------LIGGLFLLYIAIKLLHEERDEDPENA 89 (183)
T ss_pred hCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccccccchh
Confidence 3488999999999997 6999999999999999999 6421 1158999999987765532
Q ss_pred -----CCccccccchhHHHhheeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy3773 262 -----NYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFS 336 (578)
Q Consensus 262 -----~~~~~~~~~~~~~ai~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P 336 (578)
+......+++||.++.+|.++|++||+|||+|++|+++ |++++++|+++|+|+|+++|++++++|+|||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~------~~~iv~~g~i~si~~m~~~~~~~~~~l~~~p 163 (183)
T PF03741_consen 90 EVEEEKKFFPVSKSSLWLAVIQIELADLVFSLDSVLAAVGITD------DFFIVITGNIISILLMRFLSFLLAKLLERFP 163 (183)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123456689999999999999999999999999997 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy3773 337 SIIILCSILLGYLSATD 353 (578)
Q Consensus 337 ~i~~l~~~~L~~i~~~~ 353 (578)
+++|+|+++|+|+|+.+
T Consensus 164 ~l~~~~~~~L~~ig~~l 180 (183)
T PF03741_consen 164 YLKYLAAAILGFIGVKL 180 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999986
No 24
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=99.90 E-value=7.9e-25 Score=210.92 Aligned_cols=145 Identities=39% Similarity=0.583 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHhhhhhccccccccCCceEEeccccccccceEEEeeeeecccCCCCC-c-ccc
Q psy3773 191 EELRLELFNKINSLGI-GAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGFLLFWISIKLLSNDHNY-T-TIA 267 (578)
Q Consensus 191 ~~Le~el~~~~n~lGi-Ga~glgg~~t~l~v~i~~~p~h~a~~pvav~~~C~~~R~g~~li~~a~kL~~~~~~~-~-~~~ 267 (578)
.+++++.|+++..+|+ +|..+|..+.+++.++.++|.. - .-+|.+++|+++|+..++++. + +.+
T Consensus 25 ~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~~~~~----~---------iaGGllLl~ia~~ml~~~~~~~~~~~~ 91 (176)
T TIGR03717 25 RNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLAIPFL----K---------LIGGLLLLWIGWKLLLEEEEEQGGDVK 91 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----H---------HHHHHHHHHHHHHHHhccccccccccc
Confidence 3578899999999996 6999999999999999997631 1 115999999998887644332 1 234
Q ss_pred ccchhHHHhheeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHH
Q psy3773 268 SGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLG 347 (578)
Q Consensus 268 ~~~~~~~ai~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~ 347 (578)
...+||.++.+|.++|++||+|||+|++|++++ |+++|++|+++|+|+|+|+|++++++|+|||+++|+|+++|+
T Consensus 92 ~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~-----~~~li~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~ 166 (176)
T TIGR03717 92 GSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHG-----HLGLLIFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLG 166 (176)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999999999999999984 899999999999999999999999999999999999999999
Q ss_pred Hhhhcc
Q psy3773 348 YLSATD 353 (578)
Q Consensus 348 ~i~~~~ 353 (578)
|+|+.|
T Consensus 167 ~ig~kl 172 (176)
T TIGR03717 167 YVAGEM 172 (176)
T ss_pred HHHHHH
Confidence 999987
No 25
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2e-24 Score=218.36 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHhhhhhccccccccC-CceEEecccc-ccccceEEEeeee-----ecccCCCC
Q psy3773 191 EELRLELFNKINSLGI-GAQGMGGLSTVLDVKIMMYPTHAAS-KPVAIIPNCA-ATRHGFLLFWISI-----KLLSNDHN 262 (578)
Q Consensus 191 ~~Le~el~~~~n~lGi-Ga~glgg~~t~l~v~i~~~p~h~a~-~pvav~~~C~-~~R~g~~li~~a~-----kL~~~~~~ 262 (578)
++||+++|+|++.+|+ ||+.+|..+++.++|+.+++.-... ..+.+..-|+ -.+++..+.||+. ++++++..
T Consensus 43 ~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~l~~~fg~~L~~~~~~ll~~~~~~~~k~~~~~~~~~~~~~~~ 122 (254)
T COG0861 43 SKLPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQPLLYIFGLYLLWRDIKLLLGGLFLLFKATKELHERLEGEEFF 122 (254)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhcccccc
Confidence 5688999999999997 6999999999999999999752111 1111111121 1122333333331 12221111
Q ss_pred Ccccc-ccchhHHHhheeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHH
Q psy3773 263 YTTIA-SGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIIL 341 (578)
Q Consensus 263 ~~~~~-~~~~~~~ai~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l 341 (578)
..++. ...+||.|+.||.++|++||+|||+|++|+++ |+++|++|+++||++|+++|+++++|+||||+++|+
T Consensus 123 ~~~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~~------~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~ 196 (254)
T COG0861 123 VNGKLKKATPFWGAIIQIELADLVFSLDSVIAAVGMAG------HPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYL 196 (254)
T ss_pred ccccccccCcHHHHHHHHHHHHHHHhhhHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Confidence 10111 34789999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcc
Q psy3773 342 CSILLGYLSATD 353 (578)
Q Consensus 342 ~~~~L~~i~~~~ 353 (578)
|+++|+|||+.+
T Consensus 197 ~~~iL~~IG~kl 208 (254)
T COG0861 197 ALVILLFIGVKL 208 (254)
T ss_pred HHHHHHHHHHHH
Confidence 999999999997
No 26
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=99.81 E-value=1.1e-19 Score=154.58 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=73.6
Q ss_pred eeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCEEE
Q psy3773 406 TIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLK 485 (578)
Q Consensus 406 ~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G~~l~ 485 (578)
++|+|+++||+|||||++|+||+|+.|...+.+|+...+ ...++++|+++|.|++.++++|+||+|||+|++|+|++||
T Consensus 1 ~vG~I~~~hGlkG~vkv~~~td~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~i~~~~gi~~r~~Ae~l~g~~l~ 79 (84)
T PF01782_consen 1 VVGRIGKPHGLKGEVKVRPFTDFPERLFNLKQVYLEKRN-GEWRPLKVESVRPHGKSLIVKFEGIDDREAAEALRGCELY 79 (84)
T ss_dssp EEEEEEEEETTTTEEEEEE-SSSGGGGGGSSCEEEE-ET-TEEEEEEEEEEEEETTEEEEEETT--SHHHHHTTTT-EEE
T ss_pred CEEEECCCEecCEEEEEEEecCCHHHHcCCCeEEEEEcC-CceEEEEEEEEEEeCCEEEEEEcCCCCHHHHHhhCCCEEE
Confidence 489999999999999999999999999999999988433 4678999999999999999999999999999999999999
Q ss_pred EeCCC
Q psy3773 486 ISIND 490 (578)
Q Consensus 486 v~~~d 490 (578)
++++|
T Consensus 80 v~r~~ 84 (84)
T PF01782_consen 80 VPRDD 84 (84)
T ss_dssp EEGCG
T ss_pred EECCC
Confidence 99975
No 27
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=99.68 E-value=1.1e-17 Score=138.96 Aligned_cols=58 Identities=48% Similarity=0.823 Sum_probs=54.1
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhhe
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll 405 (578)
+|+++|++++|||+|||+||+|||++++.++.++||.||++||+++|||||++|.+|+
T Consensus 18 rIVv~d~r~~RdGk~iE~lG~ydP~~~~~~~~i~ln~eri~~Wl~~GAqpt~~V~~Ll 75 (75)
T PRK00040 18 RIVVADSRSPRDGRFIERVGFYNPLAKPAEEEVKLDEERVLYWLGQGAQPTDTVRRLL 75 (75)
T ss_pred EEEEEecCCCCCCCceeEEeecCCCCCCCcceEEEcHHHHHHHHHCCCccCHHHHHhC
Confidence 5789999999999999999999999876667999999999999999999999999875
No 28
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=99.67 E-value=1.3e-17 Score=139.66 Aligned_cols=60 Identities=40% Similarity=0.767 Sum_probs=55.7
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeee
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGV 409 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~ 409 (578)
+|+|+|++++|||+|||+||+|||++++ ++++||.||++||+++|||||++|.+|+..+.
T Consensus 17 rIVv~d~r~~RdGk~iE~lG~YnP~~~~--~~i~l~~~ri~~Wl~~GAqps~tV~~Ll~~~g 76 (78)
T TIGR00002 17 RIVVADSRSRRDGRYIEELGFYNPLTKE--SRVKLNVERIKYWLSKGAQPTDTVRNLLKKAG 76 (78)
T ss_pred EEEEEecCCCCCCCceeEeeeccCCCCC--cEEEEcHHHHHHHHHCCCccCHHHHHHHHHcc
Confidence 5789999999999999999999999875 48999999999999999999999999997754
No 29
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=99.65 E-value=2.6e-17 Score=140.43 Aligned_cols=62 Identities=34% Similarity=0.648 Sum_probs=56.9
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeeeec
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVL 411 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I~ 411 (578)
+|+++|+|++|||+|||+||+|||+.++ +.++||.||++||+++|||||++|.+|+..+.+.
T Consensus 19 rIVv~dsr~~RdGk~IE~lG~YnP~~~~--~~i~ln~eri~~WL~~GAqpT~tV~~Ll~~~g~~ 80 (88)
T PRK14525 19 HVVATDSRNARDGKYLEDVGIYDPTKRP--ERIELKVERIEHWLKAGAKPSQTVAMILKRAAKA 80 (88)
T ss_pred EEEEeecCCCCCCCceeEEecccCCCCC--ceEEEcHHHHHHHHHCCCccCHHHHHHHHHcCcc
Confidence 5889999999999999999999999764 4899999999999999999999999999886553
No 30
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=99.65 E-value=3.1e-17 Score=141.66 Aligned_cols=61 Identities=36% Similarity=0.567 Sum_probs=56.7
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeeee
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVV 410 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I 410 (578)
.|+++|+|++|||+|||+||||||++++. .+++|.||++||+++|||||++|.+|+..+.+
T Consensus 18 rIVvadsr~~RdGk~iE~lG~YnP~~~~~--~i~l~~eri~~Wl~~GAqpT~tV~~Llkk~g~ 78 (94)
T PRK14524 18 RIVVVDSRKRRDGAYIESLGYYNPLKEPY--EIKVDVERAVEWILKGAQPSDTVRDILRKFGV 78 (94)
T ss_pred EEEEEecCCCCCCCceeEeeecCCCCCCc--eEEEcHHHHHHHHHcCCccCHHHHHHHHHccc
Confidence 47899999999999999999999998754 89999999999999999999999999988665
No 31
>CHL00005 rps16 ribosomal protein S16
Probab=99.65 E-value=2.8e-17 Score=138.53 Aligned_cols=63 Identities=27% Similarity=0.536 Sum_probs=56.7
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeeeecccc
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAY 414 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I~~~h 414 (578)
.|+++|+|++|||+|||++|+|||+++ +++||.||++||+++|||||++|.+|+..+.+...|
T Consensus 18 rIVvadsr~~RdGk~iE~lG~YnP~~~----~~~ln~eri~~Wl~~GAqpt~tV~~Ll~~~g~~~~~ 80 (82)
T CHL00005 18 RIVAIDVRSRREGRDLEKVGFYDPIKN----QTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKEL 80 (82)
T ss_pred EEEEEeCCCCCCCcceeEeeeccCCCc----ccEEeHHHHHHHHHCcCccCHHHHHHHHHcCchhhh
Confidence 478999999999999999999999975 589999999999999999999999999887664433
No 32
>PRK14523 rpsP 30S ribosomal protein S16; Provisional
Probab=99.64 E-value=2.9e-17 Score=148.93 Aligned_cols=73 Identities=37% Similarity=0.610 Sum_probs=67.8
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeeeecccccccccE
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWI 420 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I~~~hGlkGev 420 (578)
+|+++|+|++|||+|||.||||||++++..+.++||.+|++|||++|||||++|.+|+........+-++|.+
T Consensus 18 RIVVaDsRs~RDGK~IE~LG~YdP~~~~~~~~i~Ln~eRi~yWL~~GAQPS~tV~~LLkkag~~~~~~~~~g~ 90 (137)
T PRK14523 18 HIVVADRRKPRDGRFIERVGYYNPMARGQDIRLQLEKERISHWLNQGAQTSLRVKHLIKKLEKSPEEAQKGGM 90 (137)
T ss_pred EEEEEecCCCCCCCceeeeeecCCCCCCCCceEEECHHHHHHHHHCCCccCHHHHHHHHHcccchHHHHhccc
Confidence 5899999999999999999999999876656899999999999999999999999999998898888899854
No 33
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=4.7e-17 Score=137.15 Aligned_cols=61 Identities=46% Similarity=0.725 Sum_probs=55.3
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeee
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGV 409 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~ 409 (578)
.|+++|+|++|||+|||.||+|||+. ..+++++||.||+.||+++|||||++|..|+..+.
T Consensus 18 rIVVaDsrs~RDGr~IE~lG~ynP~~-~~~~~v~l~~eri~~Wl~~GAqpSdtV~~ll~~~g 78 (87)
T COG0228 18 RIVVADSRSPRDGRFIERLGTYNPLL-GKEERVKLDEERILYWLSQGAQPSDTVRRLLKKAG 78 (87)
T ss_pred EEEEeccCCCCCCcchhhhcccCCCC-CccceEEEcHHHHHHHHHcCCcccHHHHHHHHHhh
Confidence 47899999999999999999999977 33458999999999999999999999999998743
No 34
>PRK14520 rpsP 30S ribosomal protein S16; Provisional
Probab=99.62 E-value=8.6e-17 Score=149.68 Aligned_cols=70 Identities=36% Similarity=0.489 Sum_probs=61.2
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeeee-ccccccccc
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVV-LRAYGIFGW 419 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I-~~~hGlkGe 419 (578)
+|+++|+|++|||+|||+||+|||+++++ .|+||.+|++|||++|||||++|.+||....+ .+-+|.+|.
T Consensus 19 rIVVaDsR~~RDGk~IE~lG~YnP~~~~~--~i~ln~eRi~yWL~~GAQPT~~V~~LLk~~g~~~~~~~~~~~ 89 (155)
T PRK14520 19 RIVVADSRTKRDGRAIEEIGRYHPKEEPS--LIEIDSERAQYWLSVGAQPTEPVLALLKITGDWQKFKGLPGA 89 (155)
T ss_pred EEEEeecCCCCCCCceeeeeccCCCCCCc--eEEEcHHHHHHHHHCCCccCHHHHHHHHHcchhhhccccccC
Confidence 68999999999999999999999998754 89999999999999999999999999988654 444555543
No 35
>PRK14521 rpsP 30S ribosomal protein S16; Provisional
Probab=99.61 E-value=1.1e-16 Score=153.09 Aligned_cols=72 Identities=33% Similarity=0.602 Sum_probs=63.3
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeeeecccccccccEE
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWIL 421 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I~~~hGlkGevk 421 (578)
+|+++|+|++|||+|||+||||||++++. .|+||++|++|||++|||||++|.+||....+...+-.++.++
T Consensus 19 rIVVaDsR~~RDGk~IE~lG~YnP~~~~~--~i~Ln~eRi~~WL~~GAqPTdtV~~lL~~~g~~~k~~~~~~~~ 90 (186)
T PRK14521 19 WIVAADSRAPRDGKFIEKIGTYNPNTNPA--TVDLNFDRAVYWLMNGAQPTDTARNILSYEGVLLKKHLLGGVA 90 (186)
T ss_pred EEEEEeCCCCCCCCceeeeeecCCCCCCc--eEEEcHHHHHHHHHCCCcCCHHHHHHHHHcccchhhhhhcccC
Confidence 68999999999999999999999998754 8999999999999999999999999999977765544444444
No 36
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=99.59 E-value=2e-16 Score=163.23 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHhhhhhcc-ccccccCCceEEeccccccccceEEEeeeeecccCCCCCc-cc-
Q psy3773 191 EELRLELFNKINSLGI-GAQGMGGLSTVLDVKIMM-YPTHAASKPVAIIPNCAATRHGFLLFWISIKLLSNDHNYT-TI- 266 (578)
Q Consensus 191 ~~Le~el~~~~n~lGi-Ga~glgg~~t~l~v~i~~-~p~h~a~~pvav~~~C~~~R~g~~li~~a~kL~~~~~~~~-~~- 266 (578)
-++|+++|+|+..+|+ ||+.+|+.+.++++++.. .+.. + .=+|.+++|.+.|+..+++++. ..
T Consensus 90 f~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~f~wi---~----------~ifG~fLi~~a~k~~~~~~~~~~~~~ 156 (302)
T TIGR03718 90 FAVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFHWV---L----------YIFGAFLLYTGIKMLFEGDEEDDPEN 156 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---H----------HHHHHHHHHHHHHHHhhcccccCccc
Confidence 3689999999999996 799999999999999995 4531 1 1148899999988775432211 10
Q ss_pred -----------------------------cccchhHHHhheeeeeecccChHHHHHHhccccccccccchhhHHHHHHHH
Q psy3773 267 -----------------------------ASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFS 317 (578)
Q Consensus 267 -----------------------------~~~~~~~~ai~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~is 317 (578)
....+++.++.+|.++|++||+|||.|++|+++ +..+++.|.+++
T Consensus 157 ~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~~tpl~~vli~Ie~~DlvFslDSIpAi~aiT~------d~~iV~tsnifa 230 (302)
T TIGR03718 157 NPLVRLLRRVLPVTDKYHGDRFFVRENGKRYATPLFLVLVLVETTDLIFAVDSIPAIFAITQ------DPFIVFTSNIFA 230 (302)
T ss_pred cHHHHHHHhhcCCCccccCCceeeeecCceecCcHHHHHHHHHHHHHHHhhccHHHHHHhhc------CCeEEehHHHHH
Confidence 012357789999999999999999999999999 688999999988
Q ss_pred HHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhhcc
Q psy3773 318 IPIIIFGSKLVLILIEKFSSIIILCSILLGYLSATD 353 (578)
Q Consensus 318 i~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~~~ 353 (578)
+.-+..-.-+++++|||||.++|.++++|+++|+.|
T Consensus 231 IlgLR~lyf~l~~ll~rf~~L~~~~a~iL~fIGvkm 266 (302)
T TIGR03718 231 ILGLRSLYFLLAGLLERFHYLKYGLAVILVFIGVKM 266 (302)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888777777799999999999999999999999997
No 37
>KOG3419|consensus
Probab=99.59 E-value=3e-16 Score=135.86 Aligned_cols=63 Identities=38% Similarity=0.666 Sum_probs=56.5
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCc-cceEEEcccchhhhhhhCCccccchhhheeeeee
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKK-EKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVV 410 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~-~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I 410 (578)
.|+++++|++|||++||++|+|||+++.. ++.+.||++|++|||++|||||.++.+|+.++.+
T Consensus 19 ~Ivva~~r~~rdgk~iE~lG~ydPlp~~~~~~~v~Ln~dRikyWl~~GAqpS~tv~~Ll~~aGl 82 (112)
T KOG3419|consen 19 RIVVADSRKRRDGKPIEQLGTYDPLPNQDNEKLVALNFDRIKYWLGVGAQPSDTVEELLGKAGL 82 (112)
T ss_pred EEEEeeccccccCCchhheecccCCCCCCCCcceeecHHHHHHHHhcCCccChHHHHHHHhcCC
Confidence 47889999999999999999999999644 6789999999999999999999999999955433
No 38
>PRK14522 rpsP 30S ribosomal protein S16; Provisional
Probab=99.57 E-value=4.9e-16 Score=137.53 Aligned_cols=57 Identities=28% Similarity=0.635 Sum_probs=54.0
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheee
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITI 407 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~i 407 (578)
+|+++|++++|||+|||+||||||+.++ .++||.||++||+++|||||++|.+|+..
T Consensus 19 rIVVaDsR~~RDGk~IE~lG~YdP~~~~---~v~Ln~eRi~yWL~~GAqPS~tV~~LLkk 75 (116)
T PRK14522 19 RLVLADVESPRDGKYIELLGWYDPHSEQ---NYQLKSERIFYWLNQGAELTEKAGALVKQ 75 (116)
T ss_pred EEEEeecCCCCCCCcceeeeccCCCCCC---ceEECHHHHHHHHHCCCccCHHHHHHHHh
Confidence 5889999999999999999999998763 79999999999999999999999999987
No 39
>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....
Probab=99.52 E-value=3.1e-15 Score=120.38 Aligned_cols=51 Identities=41% Similarity=0.893 Sum_probs=47.2
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCc-cceEEEcccchhhhhhhCCccc
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKK-EKKFKILLNRFTYWKQVGAKTS 398 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~-~~~~~~~~~r~~~wi~~GAq~s 398 (578)
+|+|+|++++|||++||.||+|||++++. ++++.||.||++|||++|||||
T Consensus 11 rIVv~d~r~~RdGk~iE~lG~YdP~~~~~~~~~~~l~~eri~~Wl~~GAqpT 62 (62)
T PF00886_consen 11 RIVVADSRSPRDGKFIEELGFYDPIPNPDEEKQIKLNFERIKYWLSKGAQPT 62 (62)
T ss_dssp EEEEEETTSSTTSSESEEEEEEETTSSSSSSTSEEETHHHHHHHHHTTEEEE
T ss_pred EEEEEeCCcccccchhhccceEcCCCCCCCceeEEeCHHHHHHHHHcCcCCC
Confidence 47899999999999999999999999854 4689999999999999999997
No 40
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=98.40 E-value=1.3e-06 Score=72.87 Aligned_cols=74 Identities=34% Similarity=0.328 Sum_probs=56.4
Q ss_pred CCcchhhhccCcEEEecCCcEeEEEEEe-ccCCCceEEEEEeCCccceehhccCCCcEEEeecccccceeeecCCCEEEE
Q psy3773 497 SDTFYWFNLIDCIVENIHGKLLGTVTEI-IQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIV 575 (578)
Q Consensus 497 edEfY~~DLIG~~V~d~~g~~LG~V~dV-~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~fV~~VDle~k~I~V 575 (578)
+++||++||+|++|++.+|+.+|+|.|+ ++...+.+..+....+. ...-+++.++||+. ..++..+++|.|
T Consensus 1 ~~~~~~s~l~g~~V~~~~G~~iG~V~di~id~~~~~i~~i~v~~~~----~~~~~~~~~~iP~~----~~v~~~~~~i~v 72 (79)
T PF05239_consen 1 MDEFRLSELIGKEVIDRDGEKIGKVKDIVIDPKTGKIVGIVVSSGG----FFGIGGKKVLIPWD----QIVDIGGDRIIV 72 (79)
T ss_dssp -CHGCHHHHTTSEEEETTSCEEEEEEEEEEETTTTEEEEEEEEETT----STCSSSEEEEEEGG----EEEEECTTEEEE
T ss_pred CCeEEhHHccCCEEEcCCCCEEEEEEEEEEeCCCCCEEEEEEcCCC----ccCcCCcEEEEcCe----EeEEecCCEEEE
Confidence 4799999999999999999999999999 77777777644432110 00003579999998 678899999999
Q ss_pred eCC
Q psy3773 576 DWD 578 (578)
Q Consensus 576 ~l~ 578 (578)
+.+
T Consensus 73 ~~~ 75 (79)
T PF05239_consen 73 DPP 75 (79)
T ss_dssp SSS
T ss_pred cCC
Confidence 864
No 41
>PRK14013 hypothetical protein; Provisional
Probab=98.32 E-value=2e-07 Score=97.43 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=69.2
Q ss_pred HHhheeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHH--HHhhhHHHHHHHHHHHHhhh
Q psy3773 274 HAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLIL--IEKFSSIIILCSILLGYLSA 351 (578)
Q Consensus 274 ~ai~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~--~~r~P~i~~l~~~~L~~i~~ 351 (578)
.....+-+.|++||+|||+|+.|+++ |++++.+|..+++.-+..-+..+.+. ++|||-+.+-+...++.+++
T Consensus 223 ~~fl~lE~~D~~FS~DsV~aafAiT~------d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~lgv 296 (338)
T PRK14013 223 GGFLYLEVLDASFSFDGVIGAFAITN------DIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGALAV 296 (338)
T ss_pred HHHHHHHHHHHHHHhccchhheeecC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHHHH
Confidence 45567889999999999999999999 89999999999999999998888888 99999999999999999999
Q ss_pred cc
Q psy3773 352 TD 353 (578)
Q Consensus 352 ~~ 353 (578)
.|
T Consensus 297 km 298 (338)
T PRK14013 297 IM 298 (338)
T ss_pred HH
Confidence 98
No 42
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=96.96 E-value=0.00099 Score=65.17 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=66.9
Q ss_pred eeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccC
Q psy3773 278 TIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSATDSRNS 357 (578)
Q Consensus 278 ~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~~~~~~~ 357 (578)
|+++.|.+.|.||++.++-+++.-+++..-..+..|+..++.+=+..--..+.+++.+|++.++|..+|.|++..+.+..
T Consensus 2 tl~~lE~~Ls~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~~~~ 81 (183)
T PF03741_consen 2 TLVLLEIVLSIDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLLHEE 81 (183)
T ss_pred chhhhhHHHHhhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999999999999999886544445667888999888776777777777777789999999999999999985554
Q ss_pred C
Q psy3773 358 R 358 (578)
Q Consensus 358 r 358 (578)
+
T Consensus 82 ~ 82 (183)
T PF03741_consen 82 R 82 (183)
T ss_pred c
Confidence 4
No 43
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=96.85 E-value=0.00099 Score=64.78 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=62.9
Q ss_pred hheeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhhcccc
Q psy3773 276 IKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSATDSR 355 (578)
Q Consensus 276 i~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~~~~~ 355 (578)
..||++.|++.|.||++.++-++++.+++..-.....|++.+..+.+.+.-.-..+++ .|++.+.|..+|.|++..|.+
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~ml~ 80 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKLLL 80 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999998888887665555567777777777666655555555555 799999999999999999854
Q ss_pred c
Q psy3773 356 N 356 (578)
Q Consensus 356 ~ 356 (578)
.
T Consensus 81 ~ 81 (176)
T TIGR03717 81 E 81 (176)
T ss_pred c
Confidence 3
No 44
>cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase. Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.
Probab=96.36 E-value=0.0098 Score=60.34 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=46.9
Q ss_pred hhccCcEEEecCCcEeEEEEEecc---CCCceEEEEEeCCccceehhccCCCcEEEeecccccceeeecCCCEEEEe
Q psy3773 503 FNLIDCIVENIHGKLLGTVTEIIQ---NKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVD 576 (578)
Q Consensus 503 ~DLIG~~V~d~~g~~LG~V~dV~~---~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~fV~~VDle~k~I~V~ 576 (578)
.|++|+.|+..+|+.+|+|+|++- .+.-.+|+|+... .+|++|||+.- ++++++++.|+
T Consensus 146 ~DprGl~V~g~DGevvGtV~Dv~vD~~e~~iRYLeVdtg~----------~gkkVLLPi~~-----~rId~~~V~V~ 207 (246)
T cd00226 146 VDPRGLPVVGADGEVAGKVTDLWVDRPEQLFRYLEVELAG----------GGRTVLLPMGF-----AKVKSDRVKVT 207 (246)
T ss_pred CCCCCCEeEcCCCcEeEEEEEEEEcCCcceEEEEEEEcCC----------CCCEEEEEeEE-----EEecCCEEEEe
Confidence 589999999999999999999964 4477999998631 26799999654 33457899987
No 45
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=95.14 E-value=0.033 Score=55.91 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=53.7
Q ss_pred eeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhhccccc
Q psy3773 280 IFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSATDSRN 356 (578)
Q Consensus 280 ~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~~~~~~ 356 (578)
++.|.+.|.||++.++-+++.-+++..=.....|+..++.+=+..--..+.+++ +|++.++|.++|.|++..+.+.
T Consensus 1 i~lE~vLS~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k~l~~ 76 (215)
T TIGR03716 1 VILEGLLSADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIKHFRK 76 (215)
T ss_pred CchhHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999888875433333456677777776543333333333443 6899999999999999998554
No 46
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=94.58 E-value=0.041 Score=57.82 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=60.6
Q ss_pred HhheeeeeecccChHHHHHHhcccc--ccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhhc
Q psy3773 275 AIKTIIFADLIMSIDNVLAIAGTAS--QISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSAT 352 (578)
Q Consensus 275 ai~~I~~aD~vmSlDnVla~~g~a~--g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~~ 352 (578)
.-.|..+.|.+.|.||+...+-+.. ..+++..--.+..|++.++.+=...--.-+.+++++||+.++|.+||.|++..
T Consensus 64 ~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k 143 (302)
T TIGR03718 64 EFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIK 143 (302)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456777999999999987776532 23334445577788887776555555555667778999999999999999999
Q ss_pred cccc
Q psy3773 353 DSRN 356 (578)
Q Consensus 353 ~~~~ 356 (578)
+.++
T Consensus 144 ~~~~ 147 (302)
T TIGR03718 144 MLFE 147 (302)
T ss_pred HHhh
Confidence 8553
No 47
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=93.21 E-value=0.11 Score=53.57 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=77.5
Q ss_pred chhHHHhheeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3773 270 KNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYL 349 (578)
Q Consensus 270 ~~~~~ai~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i 349 (578)
...|-+..|+++.|.+.|.||++-++=++++-+++..=-.+.+|++.++.+=+..--.++-+++.+.++.++.+.+|.|+
T Consensus 14 ~~~~~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~l~~~fg~~L~~~ 93 (254)
T COG0861 14 PAAWVALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQPLLYIFGLYLLWR 93 (254)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999866555555688899999888777777778888899999999989999999
Q ss_pred hhcccccCCCCce
Q psy3773 350 SATDSRNSRDGRF 362 (578)
Q Consensus 350 ~~~~~~~~rdg~~ 362 (578)
+..+.....+..+
T Consensus 94 ~~~ll~~~~~~~~ 106 (254)
T COG0861 94 DIKLLLGGLFLLF 106 (254)
T ss_pred HHHHHhcchhHHH
Confidence 9999666666553
No 48
>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only]
Probab=92.96 E-value=0.28 Score=42.44 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=39.8
Q ss_pred CcchhhhccCcEEEecCCcEeEEEEEec---cCCCceEEEEEeCCccceehhccCCCcEEEeecc
Q psy3773 498 DTFYWFNLIDCIVENIHGKLLGTVTEII---QNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI 559 (578)
Q Consensus 498 dEfY~~DLIG~~V~d~~g~~LG~V~dV~---~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv 559 (578)
..+++.+|.|.+|++.+|+.+|+|.|+. ++|.-.-|.|..++...... .+++++.|||-
T Consensus 4 ~~~~~s~l~gk~V~~~~G~~vG~V~dv~ld~~~g~i~~l~v~~~~~~l~~~---~k~~~v~IP~~ 65 (87)
T COG1873 4 EMMRLSELLGKEVITNDGKYVGTVSDVVLDIKEGKITGLLVIPTNKGLFLF---GKGKEVIVPYE 65 (87)
T ss_pred hhheHHHhcCcEEEcCCCeEEEEEEeEEEEccCCcEEEEEEecCCcccccc---CCCcEEEEehh
Confidence 3568999999999999999999999986 34444444454332211111 12358999994
No 49
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=85.65 E-value=1.5 Score=38.32 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=25.7
Q ss_pred eCCEEEEEecCCCCHHHHHhhcCCEEEEe
Q psy3773 459 HGNYVLANLYGITDRNLATKLQGYYLKIS 487 (578)
Q Consensus 459 ~~~~~ivkfegIddre~Ae~L~G~~l~v~ 487 (578)
|.+..|+|++|+||+++|+.|.|..++..
T Consensus 24 ~P~~~liKi~gv~s~~eA~~y~gk~v~yk 52 (100)
T COG2451 24 HPNVSLIKIEGVDSPEEAQFYLGKRVCYK 52 (100)
T ss_pred CCceEEEEEecCCCHHHHHhhhccEEEEE
Confidence 45679999999999999999999987764
No 50
>TIGR01150 puhA photosynthetic reaction center, subunit H, bacterial. This model describes the photosynthetic reaction center H subunit in non-oxygenic photosynthetic bacteria. The reaction center is an integral membrane pigment-protein that carries out light-driven electron transfer reactions. At the core of reaction center is a collection light-harvesting cofactors and closely associated polypeptides. The core protein complex is made of L, M and H subunits. The common cofactors include bacterichlorophyll, bacteriopheophytins, ubiquinone and no-heme ferrous iron. The net result of electron tranfer reactions is the establishment of proton electrochemical gradient and production of reducing equivalents in the form of NADH. Ultimately, the process results in the reduction of C02 to carbohydrates(C6H12O6) In non-oxygenic organisms, the electron donor is an organic acid rather than water. Much of our current functional understanding of photosynthesis comes from the structural determination
Probab=76.66 E-value=7.7 Score=39.58 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=41.6
Q ss_pred hccCcEEEecCCcEeEEEEEec-cCCCc--eEEEEEeCCccceehhccCCC-cEEEeecccccceeeecCCCEEEEe
Q psy3773 504 NLIDCIVENIHGKLLGTVTEII-QNKVH--SILRIIQSSTKIICTKKYKKK-YGILIPFIKIFIKNVDIIKKKIIVD 576 (578)
Q Consensus 504 DLIG~~V~d~~g~~LG~V~dV~-~~ga~--dllvV~~~~~~~~~~~~~~~~-ke~LIPfv~~fV~~VDle~k~I~V~ 576 (578)
|-.|+.|+-.||+..|+|+|+. +.+.+ -.|+|+.. ++ +.+|+|+.=. .| .++++.|+
T Consensus 150 DPrG~pV~g~Dg~v~GtV~D~WVDr~E~~iRYlEVel~-----------~~~~~vLlP~~f~---~i--~~~~V~v~ 210 (252)
T TIGR01150 150 DPRGLPVVAADGEVAGKVTDLWVDRPEQYFRYLEVELA-----------GGARTALLPMGMC---KV--KSDRVVVN 210 (252)
T ss_pred CCCCCeeEcCCCceeeEEEEEEEcCccceeeEEEEEec-----------CCCceEEecccce---ec--cCCcEEEE
Confidence 6789999999999999999997 45555 56778752 23 6899999632 22 55566654
No 51
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=75.89 E-value=3.7 Score=35.55 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=24.7
Q ss_pred eCCEEEEEecCCCCHHHHHhhcCCEEEE
Q psy3773 459 HGNYVLANLYGITDRNLATKLQGYYLKI 486 (578)
Q Consensus 459 ~~~~~ivkfegIddre~Ae~L~G~~l~v 486 (578)
+.+..|+|++|++|+++|+-|.|..+..
T Consensus 18 ~~~~aLlkiegv~~~~~a~fylGKrv~y 45 (87)
T PRK04337 18 YNRQVIIKPLGVDDREEAAKLIGRKVIW 45 (87)
T ss_pred CCceEEEEEcCcCCHHHHHhhcCceEEE
Confidence 3467999999999999999999998754
No 52
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=75.12 E-value=2.7 Score=43.08 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.0
Q ss_pred CceeEEEEcCCHHHHHHHHHHHh--cccc
Q psy3773 150 PGILGIGIGGTPEKAMLMAKKVL--MQDI 176 (578)
Q Consensus 150 P~~vgvGiGgt~~~a~~laK~al--~r~~ 176 (578)
.+-+|||+|.|+..|+.+|++|| +|.-
T Consensus 207 ~lkvGIGig~ta~~A~~~At~ALe~iR~~ 235 (246)
T PF05165_consen 207 DLKVGIGIGKTARDAGMLATKALETIREG 235 (246)
T ss_dssp -EEEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred eEEEeecCCCCHHHHHHHHHHHHHHHHhc
Confidence 46799999999999999999998 6643
No 53
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=69.11 E-value=14 Score=32.84 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=28.4
Q ss_pred cCcEEEecCCcEeEEEEEeccCCCceEEEEEeC
Q psy3773 506 IDCIVENIHGKLLGTVTEIIQNKVHSILRIIQS 538 (578)
Q Consensus 506 IG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~ 538 (578)
+|..|+|++++.+|+|.||+-.=.+..+.|+..
T Consensus 27 l~~~V~~~~~k~IG~V~dVfGPv~~PY~~Vkp~ 59 (98)
T COG3277 27 LNAPVYDANLKRIGKVVDVFGPVDEPYILVKPD 59 (98)
T ss_pred CCCeeEecCCCEEEEEEEEEccCCCCEEEEecc
Confidence 389999999999999999998667778888764
No 54
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=69.08 E-value=11 Score=33.29 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=36.6
Q ss_pred CEEEEEecCCCCHHHHHhhcCCEEE-EeCCCCCCCCCCCcchhhhccCcEEEecC-CcEeEEEEEeccCCCceEEEEE
Q psy3773 461 NYVLANLYGITDRNLATKLQGYYLK-ISINDFPKLLSSDTFYWFNLIDCIVENIH-GKLLGTVTEIIQNKVHSILRII 536 (578)
Q Consensus 461 ~~~ivkfegIddre~Ae~L~G~~l~-v~~~dlp~lL~edEfY~~DLIG~~V~d~~-g~~LG~V~dV~~~ga~dllvV~ 536 (578)
+..|+|++||+|+++|+-+.|..+. +.+..-.. . +.. ....|+|+...-+ +.+...+
T Consensus 20 ~~aLlKiegV~~~~~a~fylGKrv~yvyk~~~~~--~---------------~~k~r~iwGkV~r~HGn--sGvVrAk 78 (95)
T PF01247_consen 20 NTALLKIEGVNTKEDAQFYLGKRVAYVYKAKNKK--N---------------GSKGRVIWGKVTRPHGN--SGVVRAK 78 (95)
T ss_dssp EEEEEEESS-STCHHHHTTTT-EEEEEECE-SSS--T---------------TECSEEEEEEEEEESTT--TTEEEEE
T ss_pred CeeEEeecCccCHHHHHhhcCcEEEEEEeccccc--C---------------CCcEeEEEEEEEeEEcC--CCEEEEE
Confidence 5799999999999999999998764 44433211 1 122 3468999998543 4455444
No 55
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=65.70 E-value=7.3 Score=35.70 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.6
Q ss_pred eCCEEEEEecCCCCHHHHHhhcCCEEEE
Q psy3773 459 HGNYVLANLYGITDRNLATKLQGYYLKI 486 (578)
Q Consensus 459 ~~~~~ivkfegIddre~Ae~L~G~~l~v 486 (578)
+.+..|+|+|||+|+++|+-+.|..+..
T Consensus 37 ~~~~aLlKieGV~~~~~a~fYlGKrvay 64 (120)
T PTZ00041 37 YPNVALLKIEGVNTREDARFYLGKRVAY 64 (120)
T ss_pred CCceEEEEecCcCChhhhHhhccceEEE
Confidence 3468999999999999999999998754
No 56
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=58.80 E-value=24 Score=35.04 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHH-hHHHHHHHHHhhh----HHHHHHHHHHHHhhhcccccCCCCceeeecccccCCCCCc----cce
Q psy3773 309 LVIIGILFSIPIIIF-GSKLVLILIEKFS----SIIILCSILLGYLSATDSRNSRDGRFIERIGFYNPLASKK----EKK 379 (578)
Q Consensus 309 l~i~gl~isi~im~~-~s~~i~~~~~r~P----~i~~l~~~~L~~i~~~~~~~~rdg~~ie~lG~y~p~~~~~----~~~ 379 (578)
...+|+.+...+.+. .+--++-++..+| .++++|+++|.|++..+.|+++.....|.-+...-.+.+. --.
T Consensus 41 ~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~~~~~~~~~~~~~~~~~~~~f~~G~~~ 120 (208)
T COG1280 41 ATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAGGAALAEEAAGAPSSSRRKAFRRGLLV 120 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhHHHHHHHHHH
Confidence 444554444333322 2233445555555 5799999999999999977775555444422111000000 000
Q ss_pred EEEcccchhhhhhhCCccc
Q psy3773 380 FKILLNRFTYWKQVGAKTS 398 (578)
Q Consensus 380 ~~~~~~r~~~wi~~GAq~s 398 (578)
--+|.--+-||+..+.|--
T Consensus 121 ~l~NPK~~lf~la~~pqfv 139 (208)
T COG1280 121 NLLNPKAILFFLAFLPQFV 139 (208)
T ss_pred HhhCcHHHHHHHHHHhhhc
Confidence 0136667788888776653
No 57
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=58.75 E-value=7.1 Score=40.24 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=21.9
Q ss_pred eeEEEEcCCHHHHHHHHHHHh--cccc
Q psy3773 152 ILGIGIGGTPEKAMLMAKKVL--MQDI 176 (578)
Q Consensus 152 ~vgvGiGgt~~~a~~laK~al--~r~~ 176 (578)
-+|||+|-|+..|..+||+|| +|.-
T Consensus 217 kvGIG~g~~a~~A~~~A~~aLe~iR~~ 243 (254)
T PRK02240 217 KVGIGRGKTAEDAGNLAKHALETIREG 243 (254)
T ss_pred EeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999997 5543
No 58
>KOG0887|consensus
Probab=58.08 E-value=9.4 Score=34.14 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=39.0
Q ss_pred EeCCEEEEEecCCCCHHHHHhhcCCE-EEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEecc
Q psy3773 458 NHGNYVLANLYGITDRNLATKLQGYY-LKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQ 526 (578)
Q Consensus 458 ~~~~~~ivkfegIddre~Ae~L~G~~-l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~ 526 (578)
.+.+..++|+||++++|+|+-+.|.. +|+=++. |+- . |-+.+ -..|+|+...-
T Consensus 27 ~~~~t~llkIEGv~skeEa~fYlGkR~~yvYKa~-~~~-~----------~~k~R----vIWGkVTr~HG 80 (111)
T KOG0887|consen 27 QHPNTSLLKIEGVYSKEEASFYLGKRCVYVYKAK-PEV-R----------GSKTR----VIWGKVTRPHG 80 (111)
T ss_pred cCCCcEEEEEecccchhhhheeecCcEEEEEecC-CCC-C----------CceEE----EEEEEEecccC
Confidence 34567899999999999999999998 7887766 331 2 22232 36888888753
No 59
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed
Probab=57.74 E-value=21 Score=29.85 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=28.7
Q ss_pred cCcEEEecCCcEeEEEEEeccCCCceEEEEEeC
Q psy3773 506 IDCIVENIHGKLLGTVTEIIQNKVHSILRIIQS 538 (578)
Q Consensus 506 IG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~ 538 (578)
+|..|+|++.+.+|+|.||+-.=.+..+.|+..
T Consensus 26 ~n~~V~~~~~~~IGkV~dIfGPV~~pY~~Vk~~ 58 (73)
T PRK13149 26 IGSVVYDKKLKKIGKVVDVFGPVKEPYVLVKPD 58 (73)
T ss_pred CCCEeECCCCCEeEEEEEEECCCCCcEEEEEeC
Confidence 488999999999999999998777788888865
No 60
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=52.32 E-value=30 Score=29.17 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=38.8
Q ss_pred hhhccCcEEEec-CCcEeEEE--EEec---cCCCceEEEEEeCCccceehhccCCCcEEEeecccccceeeecCCCEEEE
Q psy3773 502 WFNLIDCIVENI-HGKLLGTV--TEII---QNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIV 575 (578)
Q Consensus 502 ~~DLIG~~V~d~-~g~~LG~V--~dV~---~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~fV~~VDle~k~I~V 575 (578)
.+||.|.+|+|. +|+.+|.| .|+. ++|.-.-++|... +.... -..+.+++.||+-+ |++| -...|.|
T Consensus 2 ~seL~~keVIni~~G~~lG~v~~~Dl~iD~~~G~I~aiIi~~~-~~~~~--~~~~~~~~~Ipw~~--I~kI--G~DvIlV 74 (76)
T TIGR02888 2 LSDLRGKEIINVNDGERLGVIGNIDLEIDEEDGRILSLIIPGK-GKKFG--LFSKGEEIEIPWDA--IKKI--GSDVILV 74 (76)
T ss_pred HHHccCCCEEECCCCcEeeccccceEEEECCCCEEEEEEEeCC-CcEEE--eecCCcEEEEEhhh--ccEE--CCCEEEE
Confidence 579999999994 89999999 6765 2443333444321 10000 00124678999954 3333 2345555
Q ss_pred e
Q psy3773 576 D 576 (578)
Q Consensus 576 ~ 576 (578)
+
T Consensus 75 ~ 75 (76)
T TIGR02888 75 D 75 (76)
T ss_pred e
Confidence 4
No 61
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=50.26 E-value=40 Score=32.28 Aligned_cols=51 Identities=33% Similarity=0.301 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHHHHHHHhHHH-HHHHHHhhhH----HHHHHHHHHHHhhhccccc
Q psy3773 306 QMLLVIIGILFSIPIIIFGSKL-VLILIEKFSS----IIILCSILLGYLSATDSRN 356 (578)
Q Consensus 306 ~~~l~i~gl~isi~im~~~s~~-i~~~~~r~P~----i~~l~~~~L~~i~~~~~~~ 356 (578)
+-...++|+.++..+.+..+-. ++.+++.+|+ +.++|+++|.|.+...-|+
T Consensus 20 ~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 20 AGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456777888877776554444 7778888775 6899999999999987543
No 62
>PRK09304 arginine exporter protein; Provisional
Probab=49.91 E-value=50 Score=32.53 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=43.3
Q ss_pred ccChHHHHHHh-ccccccccccchhhHHHHHHHHHHHHHHh-HHHHHHHHHhhhH----HHHHHHHHHHHhhhccccc
Q psy3773 285 IMSIDNVLAIA-GTASQISNKYQMLLVIIGILFSIPIIIFG-SKLVLILIEKFSS----IIILCSILLGYLSATDSRN 356 (578)
Q Consensus 285 vmSlDnVla~~-g~a~g~~~~~~~~l~i~gl~isi~im~~~-s~~i~~~~~r~P~----i~~l~~~~L~~i~~~~~~~ 356 (578)
.-+-||++.+. |+..+ .-...++|+.++..+..+. +--++.+++.+|+ ++++|+++|.|++...-|+
T Consensus 18 tPGP~~~~v~~~~~~~~-----~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~rs 90 (207)
T PRK09304 18 PLGPQNAFVMNQGIRRQ-----YHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKT 90 (207)
T ss_pred ccChHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456665554 33321 3445666666666665443 4556667888776 5788999999999998554
No 63
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=49.64 E-value=56 Score=31.54 Aligned_cols=82 Identities=7% Similarity=0.069 Sum_probs=54.2
Q ss_pred eeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCEEEEeCCCCCCCCCCCcchhhhccCcEEEe-cCCcEeEEEEEec
Q psy3773 447 KLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVEN-IHGKLLGTVTEII 525 (578)
Q Consensus 447 ~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G~~l~v~~~dlp~lL~edEfY~~DLIG~~V~d-~~g~~LG~V~dV~ 525 (578)
...-+.+++-.|+..-..+.+..|.+.-+ ++-.+++|.+..-.. .+. +..++..+++.. ++|+.||.|+||+
T Consensus 35 rvl~flvnkggwfh~h~~lp~~~i~Sig~----k~Imi~vp~~~~~~~-~ns--~~ye~m~mk~~lt~dG~iLGmveDVy 107 (176)
T COG3881 35 RVLGFLVNKGGWFHKHCCLPVKNIVSIGS----KMIMIYVPYKGSFIR-FNS--FTYEIMNMKVILTYDGTILGMVEDVY 107 (176)
T ss_pred eEEEEEEecCcEEeeeeeeeecceeeecc----ceEEEeccccceecc-cCc--hhhHhhcCceEeccCCcEeeeeeEEE
Confidence 34455666655655556788888887765 456778887776553 444 445555666655 7999999999998
Q ss_pred ---cCCCceEEEE
Q psy3773 526 ---QNKVHSILRI 535 (578)
Q Consensus 526 ---~~ga~dllvV 535 (578)
.+|.-.=|++
T Consensus 108 Fdek~gkIvgyev 120 (176)
T COG3881 108 FDEKTGKIVGYEV 120 (176)
T ss_pred EeccCCcEEEEEe
Confidence 3454444444
No 64
>TIGR00948 2a75 L-lysine exporter.
Probab=46.17 E-value=60 Score=30.96 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHHHHH-HhHHHHHHHHHhhh----HHHHHHHHHHHHhhhcccccC
Q psy3773 306 QMLLVIIGILFSIPIII-FGSKLVLILIEKFS----SIIILCSILLGYLSATDSRNS 357 (578)
Q Consensus 306 ~~~l~i~gl~isi~im~-~~s~~i~~~~~r~P----~i~~l~~~~L~~i~~~~~~~~ 357 (578)
+-....+|+.++..+.+ .++--++.+++.+| .++++|+++|.|++....|++
T Consensus 21 ~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 21 HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777766664 34444566777777 568999999999999986654
No 65
>COG3768 Predicted membrane protein [Function unknown]
Probab=45.23 E-value=48 Score=35.35 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=41.4
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhhc
Q psy3773 306 QMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSAT 352 (578)
Q Consensus 306 ~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~~ 352 (578)
.+.++.+|+++|..+..|+-++|-.+-+|+-||-|.+.+..+.++.+
T Consensus 65 k~~~~a~~vLf~~Av~~q~~qwi~d~~qr~dWl~~~a~~v~~l~vla 111 (350)
T COG3768 65 KIMLGAGGVLFSLAVGLQSVQWIRDLFQRADWLGLGAAAVGALIVLA 111 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56689999999999999999999999999999999888776666554
No 66
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=43.85 E-value=4.6 Score=42.26 Aligned_cols=58 Identities=14% Similarity=0.290 Sum_probs=41.2
Q ss_pred HHhheeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHH----HHhhhHHH
Q psy3773 274 HAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLIL----IEKFSSII 339 (578)
Q Consensus 274 ~ai~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~----~~r~P~i~ 339 (578)
......-++|..||+|-|+.+=+.++ |+.++.+|+- |.-|..=|-.|.-. +++|.-+.
T Consensus 183 ~~FlYLEVLDASFSfDGVIGAFAiT~------~i~iI~iGLg--IGAmfVRSlTi~lV~kgtL~~Y~YLE 244 (294)
T PF04332_consen 183 SGFLYLEVLDASFSFDGVIGAFAITN------NIFIIAIGLG--IGAMFVRSLTIYLVEKGTLSEYRYLE 244 (294)
T ss_pred HHHHHHHHHhhhccccceeehhhhhc------chHHHHHhcc--cceeeeeeeeEEeEecCcHHHhHHHh
Confidence 44567788999999999999999999 7888888876 44454444333322 55555543
No 67
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=43.76 E-value=23 Score=32.58 Aligned_cols=60 Identities=7% Similarity=0.051 Sum_probs=38.6
Q ss_pred cccchhhhhhhCCccccchh-------hheeeeeecccccccccEEEEEccCch-hhhccCcEEEEEc
Q psy3773 383 LLNRFTYWKQVGAKTSLTVD-------HLITIGVVLRAYGIFGWILIKLFLDDK-NIFFYARKIWFFD 442 (578)
Q Consensus 383 ~~~r~~~wi~~GAq~s~tv~-------~ll~iG~I~~~hGlkGevkv~~~td~p-~~f~~~~~v~l~~ 442 (578)
+.+-..+++++-.-.-.... -.+.-|+|+++||-.|.|+.+--.+-| ..+...-.++|++
T Consensus 50 ~~~~a~fYlGKrvayvyka~~~~~~~k~RviwGKVtR~HGnsGvVrAkF~~nLPp~A~G~~VrVmlyP 117 (120)
T PTZ00041 50 TREDARFYLGKRVAYVYKAKKLKNGTKFRAIWGKITRPHGNSGVVRARFNKNLPPKAIGSRVRVFLYP 117 (120)
T ss_pred ChhhhHhhccceEEEEEcCccccCCcceeEEEEEEEcccCCCcEEEEEeCCCCChHHcCCeEEEEEcc
Confidence 45666777776544322221 124459999999999999998777655 6665544555553
No 68
>PRK14013 hypothetical protein; Provisional
Probab=43.69 E-value=29 Score=37.29 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=54.8
Q ss_pred heeeeeecccChHHHHHHhccccccccccchhhHHHHHHHHHHHHH--------HhHH-----------------HHHHH
Q psy3773 277 KTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIII--------FGSK-----------------LVLIL 331 (578)
Q Consensus 277 ~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~--------~~s~-----------------~i~~~ 331 (578)
.+..+..++-|+||.+-.+.+.+..++.-.=..+..|+++++..|. |.+. .-..+
T Consensus 33 ~~L~vLEisLsfDNaIvnA~vl~~m~~~wq~~fl~~Gi~iAvFgmRlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l 112 (338)
T PRK14013 33 AILAVLEISLSFDNAVVNATVLKRMSPKWQKRFLTWGILIAVFGMRLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEIL 112 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHH
Confidence 3445577889999999999998855444444578888888883332 2221 12245
Q ss_pred HHhhhHHHHHHHHHHHHhhhcc
Q psy3773 332 IEKFSSIIILCSILLGYLSATD 353 (578)
Q Consensus 332 ~~r~P~i~~l~~~~L~~i~~~~ 353 (578)
.+.||.|...|..||.++...-
T Consensus 113 ~~ah~~I~~fGG~FLlmvfL~f 134 (338)
T PRK14013 113 TDAHPQIAAFGGTFLLMVFLNF 134 (338)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999998774
No 69
>KOG0887|consensus
Probab=43.56 E-value=26 Score=31.46 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=40.3
Q ss_pred cccchhhhhhhC------Cccccchhhheee-eeecccccccccEEEEEccCch-hhhccCcEEEEEc
Q psy3773 383 LLNRFTYWKQVG------AKTSLTVDHLITI-GVVLRAYGIFGWILIKLFLDDK-NIFFYARKIWFFD 442 (578)
Q Consensus 383 ~~~r~~~wi~~G------Aq~s~tv~~ll~i-G~I~~~hGlkGevkv~~~td~p-~~f~~~~~v~l~~ 442 (578)
..|-.+|++++. |+|.....+.-.| |+|+++||-.|-|+.+-..+.| ..|-..-.++|++
T Consensus 41 skeEa~fYlGkR~~yvYKa~~~~~~~k~RvIWGkVTr~HGNsG~VrAkF~~Nlp~Ka~G~rvrVmLYp 108 (111)
T KOG0887|consen 41 SKEEASFYLGKRCVYVYKAKPEVRGSKTRVIWGKVTRPHGNSGVVRAKFTSNLPPKAMGHRVRVMLYP 108 (111)
T ss_pred chhhhheeecCcEEEEEecCCCCCCceEEEEEEEEecccCCcceEEEEeccCCChhHcCcEEEEEEec
Confidence 456778888888 5555444444444 9999999999999997665544 5554443445543
No 70
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=41.97 E-value=35 Score=31.21 Aligned_cols=57 Identities=19% Similarity=0.479 Sum_probs=42.2
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccCCCCceeeecccc
Q psy3773 306 QMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSATDSRNSRDGRFIERIGFY 369 (578)
Q Consensus 306 ~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~~~~~~~rdg~~ie~lG~y 369 (578)
-+.+-++|-++.+|++++.-..+.+++.|+|.+.-.. -|+ ..|..+-++.+|+.|++
T Consensus 19 ~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~----~~~---~~k~~~~~~~i~kyg~~ 75 (121)
T PF06695_consen 19 AFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFY----EWL---EKKAEKKSKKIEKYGFW 75 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHH---HHHHHHHHHHHHHHhHH
Confidence 5667788999999999999999999999999988622 221 12333466777777754
No 71
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=40.56 E-value=28 Score=30.70 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=31.3
Q ss_pred ccchhhhhhhCCccccchhhheeeeeecccccccccEEEEEccCch
Q psy3773 384 LNRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDK 429 (578)
Q Consensus 384 ~~r~~~wi~~GAq~s~tv~~ll~iG~I~~~hGlkGevkv~~~td~p 429 (578)
.+.+++++++=+-.-.+-.-.+..|+|+++||-.|-|+++-.-.-|
T Consensus 38 ~~eA~~y~gk~v~yk~~~~G~Vi~G~V~R~HGnsGaVrarF~~~LP 83 (100)
T COG2451 38 PEEAQFYLGKRVCYKYRSSGRVIKGKVVRTHGNSGAVRARFERNLP 83 (100)
T ss_pred HHHHHhhhccEEEEEeCCCCcEEEEEEEEecCCcceEEEEecCCCC
Confidence 4567777776443333333477789999999999999986444434
No 72
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=39.79 E-value=46 Score=33.95 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=23.1
Q ss_pred CceeEEEEcCCHHHHHHHHHHHh--ccccc
Q psy3773 150 PGILGIGIGGTPEKAMLMAKKVL--MQDIN 177 (578)
Q Consensus 150 P~~vgvGiGgt~~~a~~laK~al--~r~~~ 177 (578)
-.-+|||||-|+..|..+|+.|| +|.-+
T Consensus 211 ~lkvGIGig~ta~~A~~lA~~aLe~iR~~~ 240 (250)
T COG2429 211 DLKVGIGIGKTARDAGALATHALEKIRGKG 240 (250)
T ss_pred ceEeeeccCCCHHHHHHHHHHHHHHHhccC
Confidence 35689999999999999999997 55433
No 73
>PF09939 DUF2171: Uncharacterized protein conserved in bacteria (DUF2171); InterPro: IPR018684 This family of various hypothetical prokaryotic proteins has no known function.
Probab=39.19 E-value=1.5e+02 Score=24.58 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=36.3
Q ss_pred CcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeecccccceeeecCCCEEEEe
Q psy3773 507 DCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVD 576 (578)
Q Consensus 507 G~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~fV~~VDle~k~I~V~ 576 (578)
+|+|+..+|..+|+|..+. | ..+-.-+.. +..++..-+||. .+|.+|| ++++.++
T Consensus 5 hmeVi~sdG~~vGtVDhve--G-d~IKLtk~d--------~~~~g~HH~IPl--s~V~~Vd--~~~V~L~ 59 (67)
T PF09939_consen 5 HMEVIGSDGVHVGTVDHVE--G-DRIKLTKDD--------SGHDGQHHYIPL--SWVDSVD--DDKVHLS 59 (67)
T ss_pred CCEEEeCCCCEEEEEeeEe--C-CEEEEeccC--------CCCCCcceEEeh--hHheeEc--CCEEEEc
Confidence 7899999999999999995 4 333322221 111466789998 5677775 4455554
No 74
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=36.54 E-value=81 Score=29.02 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=36.7
Q ss_pred cChHHHHHHhccccccccccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhhcc
Q psy3773 286 MSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSATD 353 (578)
Q Consensus 286 mSlDnVla~~g~a~g~~~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~~~ 353 (578)
||.|....+++++ .++|+++|+|+..+.+.+ .-.|+..+++..+..+++..-
T Consensus 21 lT~~El~~~a~~~-----------~~~g~~~gl~la~~~g~~-----a~~pt~~ll~~~~~v~~gg~~ 72 (121)
T PF11990_consen 21 LTADELGLAAGVG-----------FVAGLVVGLPLALLTGWW-----AMIPTGALLGPILGVFVGGKL 72 (121)
T ss_pred CCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHH
Confidence 5667776666652 467788888877664433 246888899988888888765
No 75
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=36.28 E-value=51 Score=28.73 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHHHHHhhhH----HHHHHHHHHHHhhhcc
Q psy3773 306 QMLLVIIGILFSIPIIIFGSKLVLILIEKFSS----IIILCSILLGYLSATD 353 (578)
Q Consensus 306 ~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~----i~~l~~~~L~~i~~~~ 353 (578)
...+..+|+++++.+.++.+..+..-||+-|- +..+|+++.+|-+...
T Consensus 16 ~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ry 67 (90)
T PF14159_consen 16 KRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRY 67 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHH
Confidence 45678899999999999999999999999764 5789999999999887
No 76
>PRK10229 threonine efflux system; Provisional
Probab=35.20 E-value=89 Score=30.52 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHH-HHhHHHHHHHHHhhh----HHHHHHHHHHHHhhhccccc
Q psy3773 308 LLVIIGILFSIPII-IFGSKLVLILIEKFS----SIIILCSILLGYLSATDSRN 356 (578)
Q Consensus 308 ~l~i~gl~isi~im-~~~s~~i~~~~~r~P----~i~~l~~~~L~~i~~~~~~~ 356 (578)
...++|+.++..+. +.+.--++.++..+| .++++|+++|.|.+...-|+
T Consensus 39 ~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~ 92 (206)
T PRK10229 39 MMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRG 92 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666665554 333345566777777 67899999999999988543
No 77
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=34.62 E-value=1e+02 Score=30.12 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHH-hHHHHHHHHHhhh----HHHHHHHHHHHHhhhcccccC
Q psy3773 307 MLLVIIGILFSIPIIIF-GSKLVLILIEKFS----SIIILCSILLGYLSATDSRNS 357 (578)
Q Consensus 307 ~~l~i~gl~isi~im~~-~s~~i~~~~~r~P----~i~~l~~~~L~~i~~~~~~~~ 357 (578)
-...++|+.++..+... ++--++.+++.+| .++++|+++|.|++...-|++
T Consensus 39 ~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 39 AVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44566677777666643 4455566777776 568999999999999986553
No 78
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=34.62 E-value=95 Score=32.82 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=37.9
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q psy3773 306 QMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSA 351 (578)
Q Consensus 306 ~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~ 351 (578)
.+.+..++.++|..+.+++-.++..+..++||+-++++++++.+++
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~wLg~~~~~l~~~~~l 60 (289)
T TIGR01620 15 KLGLGALGVLFGLAFVLQAVQWIRNLFQRSDWLGLTATIALIVIIF 60 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 4557778888999999999999999999999998877766655443
No 79
>COG1279 Lysine efflux permease [General function prediction only]
Probab=33.76 E-value=1.2e+02 Score=30.48 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=44.0
Q ss_pred cccchhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHH----HHHHHHHHHHhhhcccccCCCC
Q psy3773 303 NKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSI----IILCSILLGYLSATDSRNSRDG 360 (578)
Q Consensus 303 ~~~~~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i----~~l~~~~L~~i~~~~~~~~rdg 360 (578)
.++++.+..+..+.=+.+|..|=--++.++.++|++ .+.|++||.|.+..-.++..++
T Consensus 33 r~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 33 REYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345666666666677777877878889999999986 4789999999999875554443
No 80
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=33.55 E-value=1.4e+02 Score=29.10 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=43.9
Q ss_pred cChHHHHHHhcc-ccccccccchhhHHHHHHHHHHHHHHhHH-HHHHHHHhhhH----HHHHHHHHHHHhhhccccc
Q psy3773 286 MSIDNVLAIAGT-ASQISNKYQMLLVIIGILFSIPIIIFGSK-LVLILIEKFSS----IIILCSILLGYLSATDSRN 356 (578)
Q Consensus 286 mSlDnVla~~g~-a~g~~~~~~~~l~i~gl~isi~im~~~s~-~i~~~~~r~P~----i~~l~~~~L~~i~~~~~~~ 356 (578)
=.=||++.+.-. .+|. . +-...++|+.++..+.+..+. .++.+++.+|+ ++++|+++|.|.+...-|.
T Consensus 20 PGP~~~~v~~~~~~~G~--r-~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 20 PGPNNILALSSATSHGF--R-QSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred CChHHHHHHHHHHHhCH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355777666433 3331 1 333566677666666555444 34477778775 6799999999999998654
No 81
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=31.56 E-value=33 Score=29.87 Aligned_cols=45 Identities=9% Similarity=-0.106 Sum_probs=30.2
Q ss_pred ccchhhhhhhCCccccchhhheeeeeecccccccccEEEEEccCch
Q psy3773 384 LNRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDK 429 (578)
Q Consensus 384 ~~r~~~wi~~GAq~s~tv~~ll~iG~I~~~hGlkGevkv~~~td~p 429 (578)
.+-.++++++-.-.-.+.. -+.-|+|+++||-.|.|+.+--.+-|
T Consensus 32 ~~~a~fylGKrv~yvyk~g-rviwGKItR~HGnsGvVrAkF~~nLP 76 (87)
T PRK04337 32 REEAAKLIGRKVIWKDPTG-NKYVGKIVRVHGNRGEVRARFKPGLP 76 (87)
T ss_pred HHHHHhhcCceEEEEeCCC-CEEEEEEEeeeCCCceEEEEECCCCC
Confidence 4456666665544322222 35579999999999999997666654
No 82
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=29.87 E-value=1.4e+02 Score=28.46 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHH-HHHHhhh----HHHHHHHHHHHHhhhcccccCCCCce
Q psy3773 307 MLLVIIGILFSIPIIIFGSKLVL-ILIEKFS----SIIILCSILLGYLSATDSRNSRDGRF 362 (578)
Q Consensus 307 ~~l~i~gl~isi~im~~~s~~i~-~~~~r~P----~i~~l~~~~L~~i~~~~~~~~rdg~~ 362 (578)
-...++|..++-.+.+..+..-. .+++.+| .+.++|+++|.|++....++.+....
T Consensus 26 ~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~ 86 (191)
T PF01810_consen 26 GLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSKS 86 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Confidence 44566666666555554444433 3345455 56789999999999998555544443
No 83
>PF10861 DUF2784: Protein of Unknown function (DUF2784); InterPro: IPR021218 This is a family of uncharacterised protein. The function is not known however it is conserved in Bacteria.
Probab=28.36 E-value=81 Score=28.64 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHhhhcccccCCCCceeeecccccCCCC
Q psy3773 334 KFSSIIILCSILLGYLSATDSRNSRDGRFIERIGFYNPLAS 374 (578)
Q Consensus 334 r~P~i~~l~~~~L~~i~~~~~~~~rdg~~ie~lG~y~p~~~ 374 (578)
|.|++.++-+..++|.++. +-+|.++|.|.
T Consensus 28 r~~~~~~lHL~a~~w~~~~-----------~~~G~~CPLT~ 57 (112)
T PF10861_consen 28 RWPWFRWLHLPAIAWGVLQ-----------EWLGWYCPLTD 57 (112)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHCCCCCCcH
Confidence 9999999999999998887 56799999985
No 84
>PLN02777 photosystem I P subunit (PSI-P)
Probab=27.94 E-value=60 Score=31.43 Aligned_cols=44 Identities=11% Similarity=0.289 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhH----HHHHHHHHHHHhhhcc
Q psy3773 310 VIIGILFSIPIIIFGSKLVLILIEKFSS----IIILCSILLGYLSATD 353 (578)
Q Consensus 310 ~i~gl~isi~im~~~s~~i~~~~~r~P~----i~~l~~~~L~~i~~~~ 353 (578)
-+.|+++...+.+|.+.-+..-||+.|. +..+|+++.+|.+...
T Consensus 95 av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRy 142 (167)
T PLN02777 95 AVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKN 142 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhH
Confidence 4457777888888999999999999985 6789999999999887
No 85
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=27.17 E-value=53 Score=34.04 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=29.7
Q ss_pred HHHHHHHhhccCCCCCC-CceeEEEEcCCHHHHHHHHHHHhccccc
Q psy3773 133 VDWIMKTVPTMGAGWCP-PGILGIGIGGTPEKAMLMAKKVLMQDIN 177 (578)
Q Consensus 133 ~~~v~~~v~~~G~~~Cp-P~~vgvGiGgt~~~a~~laK~al~r~~~ 177 (578)
.+-+++.|.+. +| ++-+|||+|-|+.+|..+|.++| +.+|
T Consensus 69 ~~~i~e~I~n~----~PV~ls~GIG~g~TP~eA~~~At~~L-e~~g 109 (254)
T PRK02240 69 HARIQESIRNR----YPVTVSMGIGTAETPYEAQKLATEAL-QEAG 109 (254)
T ss_pred HHHHHHHHHhc----CCCceEEEEEecCCHHHHHHHHHHHH-HHhc
Confidence 44556666653 34 67899999999999999999885 3355
No 86
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=26.97 E-value=1.4e+02 Score=30.56 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=28.4
Q ss_pred hHHHHHHHHhhccCCCCCCCceeEEEEcCCHHHH--HHHHHHHh
Q psy3773 131 SLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKA--MLMAKKVL 172 (578)
Q Consensus 131 ~v~~~v~~~v~~~G~~~CpP~~vgvGiGgt~~~a--~~laK~al 172 (578)
.+.+|+.+.+.+.|.+. +-||+-|.-|.| +.||++|+
T Consensus 4 ~l~~~L~~~~~~~g~~~-----vVvglSGGiDSav~A~La~~Al 42 (242)
T PF02540_consen 4 ALVDFLRDYVKKSGAKG-----VVVGLSGGIDSAVVAALAVKAL 42 (242)
T ss_dssp HHHHHHHHHHHHHTTSE-----EEEEETSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCe-----EEEEcCCCCCHHHHHHHHHHHh
Confidence 47889999999998432 337789997765 56888887
No 87
>PF04410 Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR007504 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. This entry represents Gar1 and Naf1. Naf1 is an RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex, disappearing during maturation of the complex being replaced by GAR1 to yield mature H/ACA snoRNPs complex. Naf1 reveals a striking structural homology with the core domain of archaeal Gar1 [].; GO: 0030515 snoRNA binding, 0031120 snRNA pseudouridine synthesis, 0042254 ribosome biogenesis; PDB: 2EY4_C 3MQK_C 2RFK_C 2HVY_B 3HAY_B 3U28_C 3UAI_C 2EQN_A 2V3M_F.
Probab=25.06 E-value=1.7e+02 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=25.9
Q ss_pred CcEEEecCCcEeEEEEEeccCCCceEEEEEe
Q psy3773 507 DCIVENIHGKLLGTVTEIIQNKVHSILRIIQ 537 (578)
Q Consensus 507 G~~V~d~~g~~LG~V~dV~~~ga~dllvV~~ 537 (578)
|.-|++++.+.+|+|.||+=.=.+.+|.|+.
T Consensus 51 ~s~v~~edr~~iG~V~eiFGpV~~P~y~Vr~ 81 (154)
T PF04410_consen 51 GSVVCLEDRTKIGKVDEIFGPVNNPYYSVRF 81 (154)
T ss_dssp T-EEEETTSBEEEEEEEEESESSS-EEEEE-
T ss_pred CCEEECCCCCEeEEEeeEeCCCCceEEEEEe
Confidence 7889999999999999999877889999994
No 88
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.82 E-value=11 Score=39.47 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=30.8
Q ss_pred HHhheeeeeecccChHHHHHHhccccccccccchhhHHHHHHH
Q psy3773 274 HAIKTIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILF 316 (578)
Q Consensus 274 ~ai~~I~~aD~vmSlDnVla~~g~a~g~~~~~~~~l~i~gl~i 316 (578)
.+-...-+.|..||+|-|+.+-++++ |+.++.+||-|
T Consensus 230 a~FLYLEVLDAsFSFDGViGAFAiT~------d~vIIalGLgI 266 (346)
T COG2899 230 AAFLYLEVLDASFSFDGVIGAFAITT------DPVIIALGLGI 266 (346)
T ss_pred hHHHHHHHHhhhccccceeeeeeecc------Cchhheeccch
Confidence 44567788999999999999999998 77777777764
No 89
>PRK10958 leucine export protein LeuE; Provisional
Probab=24.77 E-value=2.1e+02 Score=28.33 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=44.8
Q ss_pred ccChHHHHHHhcc-ccccccccchhhHHHHHHHHHHHHHHhHH-HHHHHHHhhh----HHHHHHHHHHHHhhhcccccC
Q psy3773 285 IMSIDNVLAIAGT-ASQISNKYQMLLVIIGILFSIPIIIFGSK-LVLILIEKFS----SIIILCSILLGYLSATDSRNS 357 (578)
Q Consensus 285 vmSlDnVla~~g~-a~g~~~~~~~~l~i~gl~isi~im~~~s~-~i~~~~~r~P----~i~~l~~~~L~~i~~~~~~~~ 357 (578)
+=+=||++.+.-. .+|. . +-...++|+.++..+.+..+. -++.++..+| .++++|+++|.|.+...-|++
T Consensus 23 sPGP~~~~v~~~~~~~G~--r-~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~ 98 (212)
T PRK10958 23 LPGPNSLYVLSTAARRGV--K-AGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAA 98 (212)
T ss_pred CCchHHHHHHHHHHhhCH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355666555444 3321 1 334456677777776655554 4667777765 568999999999999875443
No 90
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=22.07 E-value=65 Score=32.25 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=21.0
Q ss_pred ecccccccccEEEEEccCchhhhccCcEEEEEc
Q psy3773 410 VLRAYGIFGWILIKLFLDDKNIFFYARKIWFFD 442 (578)
Q Consensus 410 I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~ 442 (578)
+...||-+=.|.++|. + .+.|..+++|.+.+
T Consensus 158 V~D~~Gq~hyv~veP~-~-~~~~~~G~~VLlv~ 188 (202)
T PF07290_consen 158 VKDQFGQLHYVMVEPE-A-GEEFKQGTEVLLVD 188 (202)
T ss_pred EEecCCCEEEEEEeeC-C-CCCCCCCCEEEEEE
Confidence 3445677777888877 2 24677888887764
No 91
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=21.13 E-value=61 Score=28.69 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=28.4
Q ss_pred ccchhhhhhhCCccccc-------hhhheeeeeecccccccccEEEEEccCch
Q psy3773 384 LNRFTYWKQVGAKTSLT-------VDHLITIGVVLRAYGIFGWILIKLFLDDK 429 (578)
Q Consensus 384 ~~r~~~wi~~GAq~s~t-------v~~ll~iG~I~~~hGlkGevkv~~~td~p 429 (578)
.+...+++++-.-.-.+ -.--...|+|+++||-.|-|+.+--.+-|
T Consensus 32 ~~~a~fylGKrv~yvyk~~~~~~~~k~r~iwGkV~r~HGnsGvVrAkF~~nLP 84 (95)
T PF01247_consen 32 KEDAQFYLGKRVAYVYKAKNKKNGSKGRVIWGKVTRPHGNSGVVRAKFKKNLP 84 (95)
T ss_dssp CHHHHTTTT-EEEEEECE-SSSTTECSEEEEEEEEEESTTTTEEEEEESS--S
T ss_pred HHHHHhhcCcEEEEEEecccccCCCcEeEEEEEEEeEEcCCCEEEEEeCCCCC
Confidence 44556666654433222 12335569999999999999997666554
No 92
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=20.90 E-value=68 Score=30.95 Aligned_cols=29 Identities=28% Similarity=0.286 Sum_probs=24.4
Q ss_pred hhccCcEEEecC-CcEeEEEEEeccCCCce
Q psy3773 503 FNLIDCIVENIH-GKLLGTVTEIIQNKVHS 531 (578)
Q Consensus 503 ~DLIG~~V~d~~-g~~LG~V~dV~~~ga~d 531 (578)
++|+|+.||++. |..+|.|.||.-....|
T Consensus 5 ~EleG~pVys~~tg~~lg~V~Dvif~~~gd 34 (176)
T COG3881 5 RELEGAPVYSTKTGEKLGAVDDVIFNFSGD 34 (176)
T ss_pred hhhcCCceEEecccccccceeeEEEecCCC
Confidence 689999999975 99999999998765444
No 93
>PRK09459 pspG phage shock protein G; Reviewed
Probab=20.71 E-value=4.4e+02 Score=22.46 Aligned_cols=45 Identities=9% Similarity=0.254 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHhhhc
Q psy3773 307 MLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSAT 352 (578)
Q Consensus 307 ~~l~i~gl~isi~im~~~s~~i~~~~~r~P~i~~l~~~~L~~i~~~ 352 (578)
+.-++.++++|..+|+.+ +.++-.+.=-||+.....++=.|=...
T Consensus 21 llgv~aAl~va~~vM~l~-Gm~~lviKLLPWLil~~v~vW~~r~~~ 65 (76)
T PRK09459 21 LLGIIAALGVATLVMFLG-GMFALMIKLLPWLLLAVVVVWVIRAIK 65 (76)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444677888888877765 677888889999998888776665544
Done!