Query psy3773
Match_columns 578
No_of_seqs 481 out of 2759
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:56:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1l_A 16S rRNA processing pro 100.0 5.1E-43 1.7E-47 338.8 20.6 169 400-578 16-184 (187)
2 3h9n_A Ribosome maturation fac 100.0 1.4E-42 4.9E-47 333.2 20.9 166 404-578 2-168 (177)
3 2qgg_A 16S rRNA-processing pro 100.0 3.6E-42 1.2E-46 331.8 18.0 165 402-578 9-179 (182)
4 2dyi_A Probable 16S rRNA-proce 100.0 6.5E-39 2.2E-43 303.7 17.0 151 403-578 2-157 (162)
5 3r8n_P 30S ribosomal protein S 99.7 1.1E-18 3.7E-23 145.8 0.7 61 348-408 18-78 (82)
6 3pys_P 30S ribosomal protein S 99.7 3.3E-18 1.1E-22 143.3 2.3 63 348-411 18-80 (83)
7 3bbn_P Ribosomal protein S16; 99.7 6.5E-18 2.2E-22 142.9 0.1 64 348-415 18-81 (88)
8 3bn0_A 30S ribosomal protein S 99.6 2.7E-17 9.2E-22 144.3 -1.3 64 348-414 19-82 (112)
9 1eys_H Photosynthetic reaction 95.4 0.033 1.1E-06 55.8 8.1 60 503-575 149-211 (259)
10 3htr_A Uncharacterized PRC-bar 94.3 0.14 4.9E-06 45.4 8.3 71 498-577 13-86 (120)
11 1pm3_A MTH1895; unknown functi 87.1 1.1 3.6E-05 38.2 6.0 59 498-559 19-81 (97)
12 1rzh_H Reaction center protein 82.8 1.9 6.3E-05 43.1 6.3 57 503-575 146-205 (260)
13 2wjn_H Reaction center protein 82.6 1.9 6.6E-05 43.0 6.3 48 503-560 150-200 (258)
14 1sqr_A 50S ribosomal protein L 74.2 3.3 0.00011 35.2 4.4 28 460-487 19-46 (95)
15 3j21_c 50S ribosomal protein L 72.8 3.3 0.00011 34.7 3.9 28 459-486 18-45 (87)
16 4a18_H RPL35A; ribosome, eukar 68.1 4.8 0.00017 35.2 4.1 59 460-537 32-91 (113)
17 2qv6_A MJ0145, GTP cyclohydrol 62.9 4.4 0.00015 40.8 3.3 28 150-177 211-240 (268)
18 3izc_j 60S ribosomal protein R 61.0 4.4 0.00015 35.2 2.5 28 459-486 24-51 (107)
19 3iz5_j 60S ribosomal protein L 59.4 5.7 0.0002 34.7 3.0 52 460-527 29-81 (111)
20 3u28_C H/ACA ribonucleoprotein 52.9 38 0.0013 29.6 7.1 34 506-539 53-86 (114)
21 2hvy_B GAR1, small nucleolar R 52.8 29 0.00099 29.9 6.3 33 506-538 33-65 (104)
22 2ey4_C Small nucleolar RNP sim 52.8 29 0.00098 28.6 6.1 33 506-538 33-65 (82)
23 1sqr_A 50S ribosomal protein L 42.5 14 0.00048 31.4 2.6 52 377-429 21-76 (95)
24 2eqn_A Hypothetical protein LO 41.5 37 0.0012 29.1 5.2 32 507-538 53-84 (103)
25 4a18_H RPL35A; ribosome, eukar 35.3 17 0.00058 31.8 2.1 37 405-441 72-109 (113)
26 3fiu_A NH(3)-dependent NAD(+) 30.7 95 0.0032 30.2 7.0 76 122-206 3-83 (249)
27 2v3m_A NAF1; ribosomal protein 28.6 63 0.0021 28.9 4.7 63 507-569 60-125 (131)
28 3j21_c 50S ribosomal protein L 27.4 27 0.00091 29.2 1.9 44 385-429 33-76 (87)
29 3izc_j 60S ribosomal protein R 26.9 16 0.00053 31.7 0.4 58 384-441 38-103 (107)
30 3iz5_j 60S ribosomal protein L 26.0 21 0.00072 31.1 1.1 58 384-441 42-107 (111)
31 1erc_A Pheromone ER-1; NMR {Eu 22.9 13 0.00044 26.0 -0.7 7 146-152 34-40 (40)
No 1
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=100.00 E-value=5.1e-43 Score=338.83 Aligned_cols=169 Identities=22% Similarity=0.445 Sum_probs=147.6
Q ss_pred chhhheeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhh
Q psy3773 400 TVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKL 479 (578)
Q Consensus 400 tv~~ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L 479 (578)
..++++.+|+|+++||+||||||+|+||+|++|...+.+|+... ...++++|+++|.|++.+++||+||+|||+||+|
T Consensus 16 ~~~~~v~VG~I~~~hGikGeVkV~~~Td~pe~~~~~~~~~l~~~--~~~~~~~v~~~r~~~~~~ivkf~gi~dr~~Ae~L 93 (187)
T 2f1l_A 16 PADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRD--GEIRQAELVRGRLHGKVLAAKLKGLDDREEARTF 93 (187)
T ss_dssp ---CEEEEEEEEEEETTTTEEEEEECSSSGGGGGGCCEEEEEET--TEEEEEEEEEEEEETTEEEEEETTCCSHHHHHTT
T ss_pred CCCCEEEEEEEeCCEeeCEEEEEEECCCCHHHhccCCEEEEecC--CcEEEEEEEEEEEECCEEEEEEeCCCCHHHHHHh
Confidence 45789999999999999999999999999999999888887532 3567999999999999999999999999999999
Q ss_pred cCCEEEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeecc
Q psy3773 480 QGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI 559 (578)
Q Consensus 480 ~G~~l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv 559 (578)
+|++||++++++|++ ++|||||+|||||+|+|++|+.+|+|++|+++||||+|+|+..++. ...+|+||||+
T Consensus 94 ~G~~l~v~r~~lp~l-~edEfY~~DLIGl~V~~~~g~~lG~V~~v~~~ganDvlvV~~~~g~-------~~~ke~LIPfv 165 (187)
T 2f1l_A 94 TGYEICIPRSELPSL-EEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGS-------LDDRERLLPYT 165 (187)
T ss_dssp TTCEEEEEGGGSCC------CCHHHHTTCEEEETTSCEEEEEEEEECCSSSCEEEEECCTTS-------SSSCCEEEECS
T ss_pred CCCEEEEEHHHCCCC-CCCCEeHHHcCCeEEEeCCCCEEEEEEEEccCCCcEEEEEEeCCCC-------CCCcEEEEech
Confidence 999999999999995 9999999999999999999999999999999999999999864100 00179999999
Q ss_pred cccceeeecCCCEEEEeCC
Q psy3773 560 KIFIKNVDIIKKKIIVDWD 578 (578)
Q Consensus 560 ~~fV~~VDle~k~I~V~l~ 578 (578)
++||++||+++|+|+|+||
T Consensus 166 ~~~V~~VDle~~~I~V~~p 184 (187)
T 2f1l_A 166 GQCVLSIDLAAGEMRVDWD 184 (187)
T ss_dssp TTTEEEEETTTTEEEECCC
T ss_pred HHhcCEEeCCCCEEEEeCC
Confidence 9999999999999999997
No 2
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=100.00 E-value=1.4e-42 Score=333.20 Aligned_cols=166 Identities=30% Similarity=0.532 Sum_probs=151.9
Q ss_pred heeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCCE
Q psy3773 404 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGYY 483 (578)
Q Consensus 404 ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G~~ 483 (578)
++.+|+|+++||+||||||+|+||+|++|...+.+|+... +..++++|+++|.|++.+++||+||+|||+||+|+|++
T Consensus 2 ~v~vG~I~~~hGikGevkv~~~Td~pe~~~~~~~~~l~~~--~~~~~~~v~~~r~~~~~~lvkf~gi~dr~~Ae~L~G~~ 79 (177)
T 3h9n_A 2 IEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIK--GEWQSIELENWRYHNHEIIVKLKGVDDREAAQILANVE 79 (177)
T ss_dssp EEEEEEEEEECSSSSCEEEEECSSSSGGGGGCCSEEEEET--TEEEEECEEEEEESSSCEEEEESSCCSHHHHHTTTTCE
T ss_pred EEEEEEEeCCCccCEEEEEEECCCCHHHhcCCCEEEEecC--CeEEEEEEEEEEEeCCEEEEEEcCCCCHHHHHHhcCCE
Confidence 6889999999999999999999999999988888887653 35789999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCCcEEEeecc-ccc
Q psy3773 484 LKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI-KIF 562 (578)
Q Consensus 484 l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv-~~f 562 (578)
||++++++|++ ++|||||+|||||+|+|++|+.+|+|++|+++||||+|+|+.... . ..+++|+||||+ ++|
T Consensus 80 l~v~~~~lp~l-~edE~Y~~dLiGl~V~~~~g~~lG~V~~v~~~gandvl~V~~~~~-----~-~~~~~e~LIP~v~~~~ 152 (177)
T 3h9n_A 80 IGVDLSVFPEL-EEGDYYWHDLIGCTVVNLEGYTMGTVTEMMETGSNDVLVVKANTK-----D-AFGKQERLIPFLYEQV 152 (177)
T ss_dssp EEEECCCCCCC-SSSCGGGGGTTTCEEEETTCCEEEEEEEEEESSSCEEEEEECCTT-----C-TTCCSEEEEECCBTTT
T ss_pred EEEEHHHCCCC-CCCCCCHHHhcCCEEEeCCCCEEEEEEEEeeCCCcEEEEEEeccc-----c-CCCCcEEEeeccchhe
Confidence 99999999995 999999999999999999999999999999999999999985310 0 013679999998 999
Q ss_pred ceeeecCCCEEEEeCC
Q psy3773 563 IKNVDIIKKKIIVDWD 578 (578)
Q Consensus 563 V~~VDle~k~I~V~l~ 578 (578)
|++||+++|+|+|+||
T Consensus 153 V~~VDl~~~~I~v~~p 168 (177)
T 3h9n_A 153 VKRVDLTTKTIEVDWD 168 (177)
T ss_dssp EEEEEGGGTEEEECCC
T ss_pred EEEEeCCCCEEEEECC
Confidence 9999999999999997
No 3
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=100.00 E-value=3.6e-42 Score=331.85 Aligned_cols=165 Identities=22% Similarity=0.406 Sum_probs=151.3
Q ss_pred hhheeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcC
Q psy3773 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQG 481 (578)
Q Consensus 402 ~~ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G 481 (578)
.+++.+|+|+++||+||||||+|+||+|++|.....+|+... +..++++|+++|.|++.+++||+||+|||+||+|+|
T Consensus 9 ~~~v~vG~I~~~hGikGevkv~~~td~pe~~~~~~~~~l~~~--~~~~~~~v~~~r~~~~~~ivkf~gi~dr~~Ae~L~G 86 (182)
T 2qgg_A 9 EDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETK--AGWQTVDVKRWKPHGKGLVVSLKGVSDRTGAESLVA 86 (182)
T ss_dssp SSEEEEEEEEEEETTTTEEEEEECSSSGGGGGGSSSEEEEET--TEEEEECEEEEEEETTEEEEEETTCCSHHHHHTTTT
T ss_pred CCEEEEEEEeCCcccCEEEEEEECCCCHHHhccCCEEEEecC--CcEEEEEEEEEEEcCCEEEEEECCCCCHHHHHHhCC
Confidence 578999999999999999999999999999999888887543 356789999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCcchhhhccCcEEEec----CCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCC-cEEEe
Q psy3773 482 YYLKISINDFPKLLSSDTFYWFNLIDCIVENI----HGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKK-YGILI 556 (578)
Q Consensus 482 ~~l~v~~~dlp~lL~edEfY~~DLIG~~V~d~----~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~-ke~LI 556 (578)
++||++++++|++ ++|||||+|||||+|+|+ +|+.+|+|++|+++||||+|+|+.... .++ +|+||
T Consensus 87 ~~l~v~~~~lp~l-~ede~Y~~dLiGl~V~~~~~~~~g~~lG~V~~v~~~gandvl~V~~~~~--------~~g~ke~LI 157 (182)
T 2qgg_A 87 SNIWIAKSQLPKA-DVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRATPD--------SIDSEERMI 157 (182)
T ss_dssp CEEEEETTCCCCC-HHHHCCHHHHTTCEEEEECTTSCEEEEEEEEEEEECSSCEEEEEECCSS--------SSSSCCEEE
T ss_pred CEEEEEHHHCCCC-CCCcEeHHHhCCcEEEEcccCCCCcEEEEEEEEccCCCcEEEEEEeccC--------CCCCeEEEe
Confidence 9999999999995 999999999999999998 899999999999999999999985210 134 79999
Q ss_pred eccc-ccceeeecCCCEEEEeCC
Q psy3773 557 PFIK-IFIKNVDIIKKKIIVDWD 578 (578)
Q Consensus 557 Pfv~-~fV~~VDle~k~I~V~l~ 578 (578)
|| + +||++||+++|+|+|+||
T Consensus 158 Pf-~~~~V~~VDl~~~~I~v~~p 179 (182)
T 2qgg_A 158 PW-HKDVVQRVDLEAGRIYVNWG 179 (182)
T ss_dssp EC-CTTTEEEEETTTTEEEESCC
T ss_pred ec-ChhhEeEEECCCCEEEEeCC
Confidence 99 9 999999999999999997
No 4
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=100.00 E-value=6.5e-39 Score=303.70 Aligned_cols=151 Identities=24% Similarity=0.386 Sum_probs=137.5
Q ss_pred hheeeeeecccccccccEEEEEccCchhhhccCcEEEEEcCCCCeeEEEEEEEEEEeCCEEEEEecCCCCHHHHHhhcCC
Q psy3773 403 HLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQGY 482 (578)
Q Consensus 403 ~ll~iG~I~~~hGlkGevkv~~~td~p~~f~~~~~v~l~~~~~~~~~~~~ve~~r~~~~~~ivkfegIddre~Ae~L~G~ 482 (578)
+++.+|+|+++||+|||||| +||+ +|...+.+|+. . + ..+ +++++|.|++.+++||+||+|||+||+|+|+
T Consensus 2 ~~v~vG~I~~~hGikGevkv--~td~--~~~~~~~~~~~-~-~-~~~--~v~~~r~~~~~~ivkf~gi~~r~~Ae~L~G~ 72 (162)
T 2dyi_A 2 RLVEIGRFGAPYALKGGLRF--RGEP--VVLHLERVYVE-G-H-GWR--AIEDLYRVGEELVVHLAGVTDRTLAEALVGL 72 (162)
T ss_dssp CEEEEEEEEEECSSSSCEEE--EECG--GGGGCSEEEET-T-T-EEE--EEEEEEEETTEEEEEETTCCSHHHHHTTTTC
T ss_pred CEEEEEEEeCCCccCeEEEE--EEch--HhcCCCEEEEe-C-C-CEE--EEEEEEEECCEEEEEEcCCCCHHHHHHhCCC
Confidence 57899999999999999999 8987 88888776653 2 2 233 9999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEeCCccceehhccCCC-----cEEEee
Q psy3773 483 YLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKK-----YGILIP 557 (578)
Q Consensus 483 ~l~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~~~~~~~~~~~~-----ke~LIP 557 (578)
+||++++++|++ ++|||||+|||||+|+ ++|+.+|+|++|+++||||+|+|+.+ ++ +|+|||
T Consensus 73 ~l~v~~~~lp~l-~e~e~y~~dLiGl~V~-~~g~~lG~V~~v~~~ga~dvl~V~~~-----------~g~~~~~~e~LIP 139 (162)
T 2dyi_A 73 RVYAEVADLPPL-EEGRYYYFALIGLPVY-VEGRQVGEVVDILDAGAQDVLIIRGV-----------GERLRDRAERLVP 139 (162)
T ss_dssp EEEEEGGGSCCC-CTTCCCHHHHTTCEEE-ETTEEEEEEEEEEEETTEEEEEEEEC-----------CSSGGGSTTEEEE
T ss_pred EEEEEHHHCCCC-CCCcEeHHHhCCeEEE-ECCeEEEEEEEEccCCCceEEEEEeC-----------CCCcCcCcEEEEe
Confidence 999999999995 9999999999999999 89999999999999999999999864 23 699999
Q ss_pred cccccceeeecCCCEEEEeCC
Q psy3773 558 FIKIFIKNVDIIKKKIIVDWD 578 (578)
Q Consensus 558 fv~~fV~~VDle~k~I~V~l~ 578 (578)
|+++||+ || +|+|+|+||
T Consensus 140 fv~~~V~-VD--~~~I~v~~p 157 (162)
T 2dyi_A 140 LQAPYVR-VE--EGSIHVDPI 157 (162)
T ss_dssp TTCTTEE-EC--SSCEEECCC
T ss_pred ccccEEE-EE--CCEEEEeCC
Confidence 9999999 99 889999997
No 5
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=99.70 E-value=1.1e-18 Score=145.85 Aligned_cols=61 Identities=46% Similarity=0.727 Sum_probs=57.0
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeee
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIG 408 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG 408 (578)
.|+++|+|++|||+|||+||+|||++++.+++++||.||++||+++|||||++|.+|+..+
T Consensus 18 rIVvadsr~~RdGr~IE~lG~YnP~~~~~~~~v~l~~eri~~Wl~~GAqptdtV~~Ll~~a 78 (82)
T 3r8n_P 18 QVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEV 78 (82)
T ss_dssp EEEEEETTSCTTSCEEEEEEEECTTCCSSSCCCCCCHHHHHHHHHHTCEECHHHHHHHTTS
T ss_pred EEEEeecCCCCCCCceeeeeEEcCCCCCCcceEEEcHHHHHHHHHCCCccCHHHHHHHHhh
Confidence 4789999999999999999999999987667899999999999999999999999998764
No 6
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=99.69 E-value=3.3e-18 Score=143.27 Aligned_cols=63 Identities=35% Similarity=0.674 Sum_probs=57.0
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeeeec
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVL 411 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I~ 411 (578)
.|+++|+|++|||+|||++|+|||+++. +++++||.||++||+++|||||++|.+|+..+.+.
T Consensus 18 rIVvadsr~~RdGr~IE~lG~YnP~~~~-~~~i~l~~eri~~Wl~~GAqptdtV~~ll~~~g~~ 80 (83)
T 3pys_P 18 RIVVTDARRKRDGKYIEKIGYYDPRKTT-PDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF 80 (83)
T ss_dssp CCEEEESSSCTTCCCSEECCCBCSSCCS-TTCBCCCHHHHHHHHHTCCCBCSTTGGGTGGGCSS
T ss_pred EEEEEecCCCCCCCceeeeeEEcCCCCC-CceEEEchHHHHHHHHCCCcCCHHHHHHHHHcCcc
Confidence 4789999999999999999999999843 45899999999999999999999999999876553
No 7
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.66 E-value=6.5e-18 Score=142.85 Aligned_cols=64 Identities=25% Similarity=0.489 Sum_probs=57.5
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeeeeccccc
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAYG 415 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I~~~hG 415 (578)
.|+++|+|++|||+|||++|+|||+++ +++||.||++||+++|||||++|.+|+..+.+...|.
T Consensus 18 rIVvadsr~~RDGr~IE~lG~YnP~~~----~~~l~~eri~~Wl~~GAqpTdtV~~ll~~~g~~~~~~ 81 (88)
T 3bbn_P 18 RIVAIDVRSRREGRDLQKVGFYDPIKS----QTYLNVPAILDFLEKGAQPTETVYDILKRAEVFKEFR 81 (88)
T ss_dssp CCCCEETTSCSSSCCSSCCCCBCTTSS----CBCCCTTTSSSSTTSSCEECTTTSSSSTTTTSSSCC-
T ss_pred EEEEEecCCCCCCCcEeEEEeccCCCC----ceEEcHHHHHHHHHcCCccCHHHHHHHHHcCCccccc
Confidence 578999999999999999999999987 5899999999999999999999999998876655543
No 8
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=99.61 E-value=2.7e-17 Score=144.34 Aligned_cols=64 Identities=19% Similarity=0.418 Sum_probs=51.5
Q ss_pred HhhhcccccCCCCceeeecccccCCCCCccceEEEcccchhhhhhhCCccccchhhheeeeeecccc
Q psy3773 348 YLSATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAY 414 (578)
Q Consensus 348 ~i~~~~~~~~rdg~~ie~lG~y~p~~~~~~~~~~~~~~r~~~wi~~GAq~s~tv~~ll~iG~I~~~h 414 (578)
.|+++|+|++|||+|||+||||||+ ++ ++++||.||++||+++|||||++|.+|+..+.+...|
T Consensus 19 rIVVaDsR~~RDGr~IE~lG~YnP~-~~--~~v~ld~eri~~WL~~GAQPTdtV~~LL~~ag~~~~~ 82 (112)
T 3bn0_A 19 RIVVMDAKSPREGKYIDILGTYDPK-RK--VLINVYPEKVKEWVLKGVELSHRAKAILWNHGILKEV 82 (112)
T ss_dssp EEEEEECC------CSEEEEEEETT-TT--EEEEECHHHHHHHHHTTCEEEHHHHHHHHHTTHHHHH
T ss_pred EEEEEecCCCCCCCCEeEeeeccCC-Cc--ceEEEcHHHHHHHHHcCCccCHHHHHHHHHcCCcccc
Confidence 4789999999999999999999999 53 5899999999999999999999999999986664433
No 9
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=95.44 E-value=0.033 Score=55.80 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=47.7
Q ss_pred hhccCcEEEecCCcEeEEEEEec---cCCCceEEEEEeCCccceehhccCCCcEEEeecccccceeeecCCCEEEE
Q psy3773 503 FNLIDCIVENIHGKLLGTVTEII---QNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIV 575 (578)
Q Consensus 503 ~DLIG~~V~d~~g~~LG~V~dV~---~~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~fV~~VDle~k~I~V 575 (578)
.||+|++|++.+|+.+|+|.+++ +++.-..++|+.+. .++++|||.- +..||-+++++.|
T Consensus 149 ~dl~G~~Vya~DGekIG~V~Dv~vD~~sG~VrYlVVdtG~----------ggkkVLiPi~---~~~Id~d~~~V~V 211 (259)
T 1eys_H 149 PDPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEVAA----------NKKKVLLPIG---FSRFDKKARKVKV 211 (259)
T ss_dssp CCCTTCEEECSSSCEEEEEEEEEEETTTTEEEEEEEEETT----------TCCEEEEEGG---GCEEEGGGTEEEC
T ss_pred CCCcCCEEEeCCCCeeEEEEEEEEECCCCeEEEEEEEcCC----------CCCcEEEecC---hhhccccCCEEEE
Confidence 57999999999999999999997 35555777887631 4678999952 4678888888887
No 10
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=94.31 E-value=0.14 Score=45.36 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=50.6
Q ss_pred CcchhhhccCcEEEecCCcEeEEEEEecc---CCCceEEEEEeCCccceehhccCCCcEEEeecccccceeeecCCCEEE
Q psy3773 498 DTFYWFNLIDCIVENIHGKLLGTVTEIIQ---NKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKII 574 (578)
Q Consensus 498 dEfY~~DLIG~~V~d~~g~~LG~V~dV~~---~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~fV~~VDle~k~I~ 574 (578)
.-+-..||+|.+|++.+|+.+|+|.|++- +|.-..++|..+. ... -+++.++||+-.- ++|.+++.+.
T Consensus 13 ~l~~~~~l~G~~V~~~dG~~iG~V~dv~iD~~~G~i~~~vv~~Gg--flG----~g~~~v~ip~~~l---~~~~~~~~~~ 83 (120)
T 3htr_A 13 KLIGSDKVQGTAVYGPDGEKIGSIERVMIEKVSGRVSYAVLSFGG--FLG----IGDDHYPLPWPAL---KYNVELGGYQ 83 (120)
T ss_dssp SEEEHHHHTTCEEECTTSCEEEEEEEEEEETTTCBEEEEEEEESS--BTT----BSCEEEEECGGGC---EEETTTTEEE
T ss_pred ceEehhhccCCEEEcCCCCEEEEEEEEEEECCCCcEEEEEEECCC--ccC----cCCEEEEeCHHHe---EEecCCCEEE
Confidence 34567899999999999999999999983 4545556776531 100 1356899998753 4788888877
Q ss_pred EeC
Q psy3773 575 VDW 577 (578)
Q Consensus 575 V~l 577 (578)
|++
T Consensus 84 v~~ 86 (120)
T 3htr_A 84 VMV 86 (120)
T ss_dssp CCC
T ss_pred eCC
Confidence 654
No 11
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=87.07 E-value=1.1 Score=38.21 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=35.8
Q ss_pred Ccchh-hhccCcEEEecCCcEeEEEEEecc---CCCceEEEEEeCCccceehhccCCCcEEEeecc
Q psy3773 498 DTFYW-FNLIDCIVENIHGKLLGTVTEIIQ---NKVHSILRIIQSSTKIICTKKYKKKYGILIPFI 559 (578)
Q Consensus 498 dEfY~-~DLIG~~V~d~~g~~LG~V~dV~~---~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv 559 (578)
..... .+|.|.+|++.+|+.+|+|.|+.= +|.-.-++|....-.... ..+.+++.|||-
T Consensus 19 ~~Mr~~seL~Gk~Vin~dG~~LG~V~Dv~iD~~~G~I~~lvl~~~~~~~~~---g~~~~~~~IPw~ 81 (97)
T 1pm3_A 19 SHMRIVEEMVGKEVLDSSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGL---GLSKGETIVPYE 81 (97)
T ss_dssp -CEETTTTSSSCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECCC------------CEEEEEGG
T ss_pred eEEEeehhCCCCEeECCCCCEEeEEEEEEEECCCCEEEEEEEcCCCeeccc---cCCCeeEEEEhh
Confidence 34455 799999999999999999999873 444444455432100000 001337899994
No 12
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=82.80 E-value=1.9 Score=43.13 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=41.6
Q ss_pred hhccCcEEEecCCcEeEEEEEecc---CCCceEEEEEeCCccceehhccCCCcEEEeecccccceeeecCCCEEEE
Q psy3773 503 FNLIDCIVENIHGKLLGTVTEIIQ---NKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIV 575 (578)
Q Consensus 503 ~DLIG~~V~d~~g~~LG~V~dV~~---~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~~fV~~VDle~k~I~V 575 (578)
.|+.|+.|+..+|+.+|+|.|++= ++.--.++|+.. .++.+|||+.-. .+|. +.+.|
T Consensus 146 ~d~~G~~Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdtG-----------ggrkVLLP~~~~---riD~--~~VyV 205 (260)
T 1rzh_H 146 KNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELK-----------DGSTRLLPMQMV---KVQS--NRVHV 205 (260)
T ss_dssp CCCTTCEEEETTSCEEEEEEEEEEETTTTEEEEEEEECT-----------TSCEEEEEGGGC---EECS--SCEEE
T ss_pred CCCCCCEeEcCCCCeeEEEEEEEEECCCCEEEEEEEEeC-----------CCCEEEeeeEEE---EEcC--CeEEE
Confidence 478999999999999999999972 344467788753 366899998643 3444 45555
No 13
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=82.58 E-value=1.9 Score=42.99 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=38.0
Q ss_pred hhccCcEEEecCCcEeEEEEEecc---CCCceEEEEEeCCccceehhccCCCcEEEeeccc
Q psy3773 503 FNLIDCIVENIHGKLLGTVTEIIQ---NKVHSILRIIQSSTKIICTKKYKKKYGILIPFIK 560 (578)
Q Consensus 503 ~DLIG~~V~d~~g~~LG~V~dV~~---~ga~dllvV~~~~~~~~~~~~~~~~ke~LIPfv~ 560 (578)
.|+.|+.|+..+|+.+|+|.|++= ++.--.+||+.+. .++.+|||+.-
T Consensus 150 ~D~~G~~Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdtGg----------ggrkVLLP~~~ 200 (258)
T 2wjn_H 150 VDPRGLPVVAADGVEAGTVTDLWVDRSEHYFRYLELSVAG----------SARTALIPLGF 200 (258)
T ss_dssp CCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEEETT----------TTEEEEEEGGG
T ss_pred CCCCCCEeEcCCCCeeEEEEEEEEECCCCEEEEEEEEcCC----------CCCEEEeeeEE
Confidence 489999999999999999999972 4444678888642 36789999864
No 14
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=74.24 E-value=3.3 Score=35.22 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.9
Q ss_pred CCEEEEEecCCCCHHHHHhhcCCEEEEe
Q psy3773 460 GNYVLANLYGITDRNLATKLQGYYLKIS 487 (578)
Q Consensus 460 ~~~~ivkfegIddre~Ae~L~G~~l~v~ 487 (578)
.+..|+|++||+|+++|+-+.|..+..-
T Consensus 19 ~~~aLlkIegV~~k~~a~fYlGKrvayv 46 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLWK 46 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEEC
T ss_pred CceEEEEEcCCCCHHHHHhhcCCeEEEE
Confidence 4679999999999999999999998763
No 15
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=72.77 E-value=3.3 Score=34.71 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=25.0
Q ss_pred eCCEEEEEecCCCCHHHHHhhcCCEEEE
Q psy3773 459 HGNYVLANLYGITDRNLATKLQGYYLKI 486 (578)
Q Consensus 459 ~~~~~ivkfegIddre~Ae~L~G~~l~v 486 (578)
+.+..|+|++|++|+++|+-+.|..+..
T Consensus 18 ~~~taLlkieGV~~~~~a~fylGKrvay 45 (87)
T 3j21_c 18 HNNVMIIKPLDVNSREEASKLIGRLVLW 45 (87)
T ss_dssp CTTCEEEEESSCCSHHHHGGGTTCEEEE
T ss_pred CCCeEEEEEcCcCCHHHHHhhcCceEEE
Confidence 3467999999999999999999998776
No 16
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=68.12 E-value=4.8 Score=35.24 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=38.7
Q ss_pred CCEEEEEecCCCCHHHHHhhcCCEEEE-eCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccCCCceEEEEEe
Q psy3773 460 GNYVLANLYGITDRNLATKLQGYYLKI-SINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQ 537 (578)
Q Consensus 460 ~~~~ivkfegIddre~Ae~L~G~~l~v-~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~ 537 (578)
.+..|+|++||+|+++|+-+.|..+.. -+.. . . -|-++ -...|+|+...-+ +.+...+.
T Consensus 32 ~~taLlKIeGV~~~~~a~fylGKrvayvykak--~--~---------~g~k~----RviwGKVtR~HGn--sGvVrAkF 91 (113)
T 4a18_H 32 SNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQ--K--K---------NGSNY----RTIWGRIGKAHGN--NGVAVARF 91 (113)
T ss_dssp EEEEEEEETTCCSHHHHHTTTTCEEEEEEEEE--E--E---------TTEEE----EEEEEEEEEEETT--TTEEEEEE
T ss_pred CCeEEEEEcCcCCHHHHHhhcCCeEEEEEecC--C--C---------CCCeE----EEEEEEEEeeeCC--CCeEEEEe
Confidence 457899999999999999999997654 3322 1 0 12222 2368999888543 44554443
No 17
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=62.85 E-value=4.4 Score=40.76 Aligned_cols=28 Identities=36% Similarity=0.321 Sum_probs=23.2
Q ss_pred CceeEEEEcCCHHHHHHHHHHHh--ccccc
Q psy3773 150 PGILGIGIGGTPEKAMLMAKKVL--MQDIN 177 (578)
Q Consensus 150 P~~vgvGiGgt~~~a~~laK~al--~r~~~ 177 (578)
.+-+|||+|.|+.+|...|++|| .|.-+
T Consensus 211 ~lkvGIGiG~TA~~Ae~~A~~ALe~~R~~~ 240 (268)
T 2qv6_A 211 ELKAGIGIGRTAEDASNLADIGLEKIRGKL 240 (268)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEeeccCCCHHHHHHHHHHHHHHHHhcC
Confidence 35689999999999999999998 45433
No 18
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=61.02 E-value=4.4 Score=35.20 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=24.0
Q ss_pred eCCEEEEEecCCCCHHHHHhhcCCEEEE
Q psy3773 459 HGNYVLANLYGITDRNLATKLQGYYLKI 486 (578)
Q Consensus 459 ~~~~~ivkfegIddre~Ae~L~G~~l~v 486 (578)
+.+..|+|++||+|+++|+-+.|..+..
T Consensus 24 ~~~taLlKIeGV~~~~~a~fylGKrvay 51 (107)
T 3izc_j 24 NPNVSLIKIEGVATPQDAQFYLGKRIAY 51 (107)
T ss_dssp CCCEEEEEESSCSTTHHHHTTCCCCCCC
T ss_pred CCCeEEEEEcCcCCHHHHHhhcCCEEEE
Confidence 3467999999999999999999986544
No 19
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=59.39 E-value=5.7 Score=34.68 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=36.1
Q ss_pred CCEEEEEecCCCCHHHHHhhcCCEE-EEeCCCCCCCCCCCcchhhhccCcEEEecCCcEeEEEEEeccC
Q psy3773 460 GNYVLANLYGITDRNLATKLQGYYL-KISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQN 527 (578)
Q Consensus 460 ~~~~ivkfegIddre~Ae~L~G~~l-~v~~~dlp~lL~edEfY~~DLIG~~V~d~~g~~LG~V~dV~~~ 527 (578)
.+..|+|++||+|+++|+-+.|..+ ||-+..-+. . | +.--...|+|+...-+
T Consensus 29 ~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~---~---------g----~k~R~iwGKVtR~HGn 81 (111)
T 3iz5_j 29 ENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS---N---------D----STIRCIWGKVTRPHGN 81 (111)
T ss_dssp CCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSS---C---------C----CCSCCEECEEEEESSS
T ss_pred CCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccC---C---------C----ceEEEEEEEEEeeeCC
Confidence 4679999999999999999999976 455544221 1 1 1123467888887543
No 20
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=52.92 E-value=38 Score=29.63 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=28.8
Q ss_pred cCcEEEecCCcEeEEEEEeccCCCceEEEEEeCC
Q psy3773 506 IDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSS 539 (578)
Q Consensus 506 IG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~ 539 (578)
.+..|++++.+.+|+|.||+-.-.+..+.|+..+
T Consensus 53 fNapVy~enK~~IGKVdEIFGPin~~YfsVK~~~ 86 (114)
T 3u28_C 53 FNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGD 86 (114)
T ss_dssp TTCEEECTTCCEEEEEEEEESBTTSCEEEEEECT
T ss_pred CCCEeEccCCccceeEeEEeCCCCccEEEEEecC
Confidence 3788999999999999999987677777888654
No 21
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=52.83 E-value=29 Score=29.90 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=28.9
Q ss_pred cCcEEEecCCcEeEEEEEeccCCCceEEEEEeC
Q psy3773 506 IDCIVENIHGKLLGTVTEIIQNKVHSILRIIQS 538 (578)
Q Consensus 506 IG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~ 538 (578)
+|..|||++.+.+|+|.||+-.=.+..+.|+..
T Consensus 33 ~na~Vy~enk~~IGKV~DIfGPV~~pY~sVKp~ 65 (104)
T 2hvy_B 33 LNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPK 65 (104)
T ss_dssp TTCEEECTTCCEEEEEEEEEEESSSCEEEEEEC
T ss_pred CCCEeEcCCCCEeEEEEEEECCCCCcEEEEEec
Confidence 488999999999999999998777788888864
No 22
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=52.79 E-value=29 Score=28.58 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=28.9
Q ss_pred cCcEEEecCCcEeEEEEEeccCCCceEEEEEeC
Q psy3773 506 IDCIVENIHGKLLGTVTEIIQNKVHSILRIIQS 538 (578)
Q Consensus 506 IG~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~ 538 (578)
+|..|+|++.+.+|+|.||+-.=.+..+.|+..
T Consensus 33 ~na~Vy~e~~~~IGkV~dIfGPv~~pY~sVk~~ 65 (82)
T 2ey4_C 33 LNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPK 65 (82)
T ss_dssp TTCEEECTTCCCCEEEEEEEEESSSCEEEEEEC
T ss_pred CCCEeEcCCCCEeEEEEEEECCCCCcEEEEEeC
Confidence 488999999999999999998777888888864
No 23
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=42.50 E-value=14 Score=31.37 Aligned_cols=52 Identities=13% Similarity=-0.069 Sum_probs=35.6
Q ss_pred cceEEEc----ccchhhhhhhCCccccchhhheeeeeecccccccccEEEEEccCch
Q psy3773 377 EKKFKIL----LNRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDK 429 (578)
Q Consensus 377 ~~~~~~~----~~r~~~wi~~GAq~s~tv~~ll~iG~I~~~hGlkGevkv~~~td~p 429 (578)
+..++++ .+-..+++++-.-.-.+.. -..-|+|+++||-.|.|+.+--.+-|
T Consensus 21 ~aLlkIegV~~k~~a~fYlGKrvayvyka~-rviwGKVtR~HGnsGvVrAkF~~nLP 76 (95)
T 1sqr_A 21 VMIIKPLDVNSREEASKLIGRLVLWKSPSG-KILKGKIVRVHGTKGAVRARFEKGLP 76 (95)
T ss_dssp EEEEEESCCCCHHHHHHHTTCEEEECCSTT-CCEEEEEEEESSSSSCEEEECSSCCS
T ss_pred eEEEEEcCCCCHHHHHhhcCCeEEEEECCC-CEEEEEEEeeeCCCCEEEEEeCCCCC
Confidence 3355553 4557778876655544433 55679999999999999997555544
No 24
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.48 E-value=37 Score=29.07 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=28.8
Q ss_pred CcEEEecCCcEeEEEEEeccCCCceEEEEEeC
Q psy3773 507 DCIVENIHGKLLGTVTEIIQNKVHSILRIIQS 538 (578)
Q Consensus 507 G~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~ 538 (578)
|.-+++++.+.+|+|.||+-.=.+..+.|+..
T Consensus 53 ~s~l~~edk~~IGkV~EiFGpV~~PyysVk~~ 84 (103)
T 2eqn_A 53 ETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFN 84 (103)
T ss_dssp TCEEECTTSBEEEEEEEEESCSSSCEEEECCS
T ss_pred CCEEEecCCcEEEEEEEEECCCCCCEEEEEeC
Confidence 78889999999999999998878999999865
No 25
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=35.31 E-value=17 Score=31.81 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=27.4
Q ss_pred eeeeeecccccccccEEEEEccCch-hhhccCcEEEEE
Q psy3773 405 ITIGVVLRAYGIFGWILIKLFLDDK-NIFFYARKIWFF 441 (578)
Q Consensus 405 l~iG~I~~~hGlkGevkv~~~td~p-~~f~~~~~v~l~ 441 (578)
+.-|+|+++||-.|.|+.+--.+-| ..+...-.++|+
T Consensus 72 viwGKVtR~HGnsGvVrAkF~~nLP~kA~G~~VrVmLy 109 (113)
T 4a18_H 72 TIWGRIGKAHGNNGVAVARFAHNLPPQAIGSVLRVMLY 109 (113)
T ss_dssp EEEEEEEEEETTTTEEEEEESSCCCGGGGGSEEEEECC
T ss_pred EEEEEEEeeeCCCCeEEEEeCCCCChHHcCCeEEEEEe
Confidence 4459999999999999998777765 566444344544
No 26
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=30.73 E-value=95 Score=30.21 Aligned_cols=76 Identities=20% Similarity=0.321 Sum_probs=43.9
Q ss_pred cccccCCc---hhHHHHHHHHhhccCCCCCCCceeEEEEcCCHHHHHH--HHHHHhccccccccccccCCChhhHHHHHH
Q psy3773 122 KFAMLNPS---DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAML--MAKKVLMQDINMNSIIKNGPKNKIEELRLE 196 (578)
Q Consensus 122 ~~~~l~p~---~~v~~~v~~~v~~~G~~~CpP~~vgvGiGgt~~~a~~--laK~al~r~~~~~~~~~~~~~~~~~~Le~e 196 (578)
.+.|+.|. +.+++|+.+.|.+.|. . -+.||+-|..|.+.. |+++++...+..+ + .++.....+ .+.
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~~v~~~~~---~--~vvv~lSGGiDSsv~a~l~~~~~~~~~av~-~--~~~~~~~~~-~~~ 73 (249)
T 3fiu_A 3 IVKDFSPKEYSQKLVNWLSDSCMNYPA---E--GFVIGLSGGIDSAVAASLAVKTGLPTTALI-L--PSDNNQHQD-MQD 73 (249)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTTTC---S--EEEEECCSSHHHHHHHHHHHHTTSCEEEEE-C--CCTTSCHHH-HHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhCC---C--CEEEEecCcHHHHHHHHHHHHhCCCCEEEE-e--cCCCCCHHH-HHH
Confidence 34566675 4689999999998883 3 466789999888754 6666653333211 1 112112222 335
Q ss_pred HHHHHHHhcc
Q psy3773 197 LFNKINSLGI 206 (578)
Q Consensus 197 l~~~~n~lGi 206 (578)
.++.++.+|+
T Consensus 74 a~~~a~~lgi 83 (249)
T 3fiu_A 74 ALELIEMLNI 83 (249)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhCC
Confidence 5667777764
No 27
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=28.56 E-value=63 Score=28.85 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=35.6
Q ss_pred CcEEEecCCcEeEEEEEeccCCCceEEEEEeCCc--cceehhcc-CCCcEEEeecccccceeeecC
Q psy3773 507 DCIVENIHGKLLGTVTEIIQNKVHSILRIIQSST--KIICTKKY-KKKYGILIPFIKIFIKNVDII 569 (578)
Q Consensus 507 G~~V~d~~g~~LG~V~dV~~~ga~dllvV~~~~~--~~~~~~~~-~~~ke~LIPfv~~fV~~VDle 569 (578)
|.-++.++.+.+|+|.||+-.=.+.+|.|+..+. +.....+. .+.+-++.|-...|+....+.
T Consensus 60 ~s~l~ledr~~IGkV~EiFGpV~~P~ysVk~~~~~~e~i~~~~~~~G~kvY~~~~~s~fv~t~~~~ 125 (131)
T 2v3m_A 60 GSIFCLEDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVTPDAHWIDTFELK 125 (131)
T ss_dssp TCEEEETTCCEEEECCEEESCSSSCEEEEECCGGGHHHHHHHHTTTTSEEEEEC------------
T ss_pred CCEEEecCCcEEEEEEEEeCCCCCcEEEEEeCCcchhhhhhcccCCCCEEEECcCccceEechhhc
Confidence 7788899999999999999888899999997522 11111111 234455678778887665543
No 28
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=27.43 E-value=27 Score=29.20 Aligned_cols=44 Identities=11% Similarity=-0.067 Sum_probs=28.5
Q ss_pred cchhhhhhhCCccccchhhheeeeeecccccccccEEEEEccCch
Q psy3773 385 NRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDK 429 (578)
Q Consensus 385 ~r~~~wi~~GAq~s~tv~~ll~iG~I~~~hGlkGevkv~~~td~p 429 (578)
+-..+++++-.-.-.+-. -..-|+|+++||-.|.|+.+--++-|
T Consensus 33 ~~a~fylGKrvayv~~~g-~~iwGKVtr~HGnsGvVrAkF~~nLP 76 (87)
T 3j21_c 33 EEASKLIGRLVLWKSPSG-KILKGKIVRVHGTKGAVRARFEKGLP 76 (87)
T ss_dssp HHHGGGTTCEEEECCSSS-CCEEEEEEEECCSSSCEEEEESSCCC
T ss_pred HHHHhhcCceEEEEeCCC-CEEEEEEEeeeCCCCeEEEEeCCCCC
Confidence 445666665433311111 14569999999999999998666654
No 29
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=26.88 E-value=16 Score=31.75 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=34.2
Q ss_pred ccchhhhhhhCCccccch------hh-heeeeeecccccccccEEEEEccCch-hhhccCcEEEEE
Q psy3773 384 LNRFTYWKQVGAKTSLTV------DH-LITIGVVLRAYGIFGWILIKLFLDDK-NIFFYARKIWFF 441 (578)
Q Consensus 384 ~~r~~~wi~~GAq~s~tv------~~-ll~iG~I~~~hGlkGevkv~~~td~p-~~f~~~~~v~l~ 441 (578)
.+-..+.+++-.-.-.+. .+ -+.-|+|+++||-.|.|+.+--.+-| ..+...-.++|+
T Consensus 38 ~~~a~fylGKrvayvykak~~~~g~k~RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G~~VrVmLy 103 (107)
T 3izc_j 38 PQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLY 103 (107)
T ss_dssp THHHHTTCCCCCCCCCCCCSSSCCCCSCCCCCCEEECSSSSSCEEECCCSCCSTTCCSSCBCC---
T ss_pred HHHHHhhcCCEEEEEEecCcccCCceEEEEEEEEEeeeCCCCeEEEEeCCCCChHHcCCeEEEEEe
Confidence 355677777654432111 11 24459999999999999997666655 555443344544
No 30
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=26.00 E-value=21 Score=31.13 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=34.1
Q ss_pred ccchhhhhhhCCcccc-------chhhheeeeeecccccccccEEEEEccCch-hhhccCcEEEEE
Q psy3773 384 LNRFTYWKQVGAKTSL-------TVDHLITIGVVLRAYGIFGWILIKLFLDDK-NIFFYARKIWFF 441 (578)
Q Consensus 384 ~~r~~~wi~~GAq~s~-------tv~~ll~iG~I~~~hGlkGevkv~~~td~p-~~f~~~~~v~l~ 441 (578)
.+-..+.+++-.-.-. .-.--+.-|+|+++||-.|.|+.+--.+-| ..+...-.++|+
T Consensus 42 ~~~a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~HGnsGvVrAkF~~nLP~kA~G~~VrVmLy 107 (111)
T 3iz5_j 42 KEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMY 107 (111)
T ss_dssp THHHHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEESSSSSCEEEECSSCCSTTCCSSCBCC---
T ss_pred HHHHHhhcCcEEEEEEeccccCCCceEEEEEEEEEeeeCCCCEEEEEeCCCCChHHcCCEEEEEEe
Confidence 3556777776543211 111124459999999999999998766655 555444344554
No 31
>1erc_A Pheromone ER-1; NMR {Euplotes raikovi} SCOP: a.10.1.1 PDB: 2erl_A*
Probab=22.89 E-value=13 Score=25.97 Aligned_cols=7 Identities=43% Similarity=1.075 Sum_probs=5.1
Q ss_pred CCCCCce
Q psy3773 146 GWCPPGI 152 (578)
Q Consensus 146 ~~CpP~~ 152 (578)
+||||++
T Consensus 34 ~~CPpyv 40 (40)
T 1erc_A 34 SNCPPYV 40 (40)
T ss_dssp HHSTTTC
T ss_pred cCCCCCC
Confidence 3699985
Done!