Your job contains 1 sequence.
>psy3773
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINE
GVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENK
TKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNS
IIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNC
AATRHGFLLFWISIKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQ
ISNKYQMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSATDSRNSRDG
RFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWI
LIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYVLANLYGITDRNLATKLQ
GYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSST
KIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3773
(578 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CPS_3613 - symbol:CPS_3613 "putative fumarate hy... 806 2.9e-80 1
UNIPROTKB|Q9KSF2 - symbol:VC1304 "Fumarate hydratase, cla... 786 3.8e-78 1
TIGR_CMR|VC_1304 - symbol:VC_1304 "fumarate hydratase, cl... 786 3.8e-78 1
TIGR_CMR|SO_2222 - symbol:SO_2222 "fumarate hydratase, cl... 783 7.9e-78 1
TIGR_CMR|SPO_1498 - symbol:SPO_1498 "fumarate hydratase, ... 721 2.9e-71 1
TIGR_CMR|CHY_1375 - symbol:CHY_1375 "fumarate hydratase, ... 480 1.0e-45 1
TIGR_CMR|DET_0453 - symbol:DET_0453 "fumarate hydratase, ... 450 1.5e-42 1
TIGR_CMR|CHY_0061 - symbol:CHY_0061 "fumarate hydratase, ... 445 5.2e-42 1
UNIPROTKB|P05847 - symbol:ttdA "L-tartrate dehydratase, a... 228 3.0e-18 1
TIGR_CMR|GSU_0994 - symbol:GSU_0994 "fumarate hydratase, ... 226 1.2e-15 1
UNIPROTKB|P14407 - symbol:fumB species:83333 "Escherichia... 224 2.0e-15 1
UNIPROTKB|P0AC33 - symbol:fumA species:83333 "Escherichia... 216 1.5e-14 1
TIGR_CMR|CBU_0445 - symbol:CBU_0445 "ribosomal protein S1... 143 4.8e-09 1
UNIPROTKB|Q8EH71 - symbol:rimM "Ribosome maturation facto... 142 6.2e-09 1
TIGR_CMR|SO_1358 - symbol:SO_1358 "16S rRNA processing pr... 142 6.2e-09 1
TIGR_CMR|BA_0423 - symbol:BA_0423 "fumarate hydratase, cl... 164 7.4e-09 1
UNIPROTKB|P0A7T3 - symbol:rpsP "30S ribosomal subunit pro... 140 1.0e-08 1
UNIPROTKB|P66653 - symbol:rimM "Ribosome maturation facto... 140 1.0e-08 1
TIGR_CMR|CPS_4069 - symbol:CPS_4069 "ribosomal protein S1... 140 1.0e-08 1
UNIPROTKB|Q3AC71 - symbol:rimM "Ribosome maturation facto... 138 1.7e-08 1
TIGR_CMR|CHY_1431 - symbol:CHY_1431 "16S rRNA processing ... 138 1.7e-08 1
UNIPROTKB|Q47WU9 - symbol:rimM "Ribosome maturation facto... 137 2.1e-08 1
TIGR_CMR|CPS_4068 - symbol:CPS_4068 "16S rRNA processing ... 137 2.1e-08 1
TIGR_CMR|SO_1357 - symbol:SO_1357 "ribosomal protein S16"... 137 2.1e-08 1
UNIPROTKB|P0A7X6 - symbol:rimM species:83333 "Escherichia... 136 2.7e-08 1
UNIPROTKB|Q9KUF9 - symbol:rimM "Ribosome maturation facto... 135 3.5e-08 1
TIGR_CMR|VC_0562 - symbol:VC_0562 "16S rRNA processing pr... 135 3.5e-08 1
TIGR_CMR|ECH_0192 - symbol:ECH_0192 "ribosomal protein S1... 134 4.5e-08 1
TIGR_CMR|SPO_3253 - symbol:SPO_3253 "ribosomal protein S1... 128 2.0e-07 1
UNIPROTKB|Q9KUG0 - symbol:rpsP "30S ribosomal protein S16... 124 5.4e-07 1
TIGR_CMR|VC_0561 - symbol:VC_0561 "ribosomal protein S16"... 124 5.4e-07 1
UNIPROTKB|Q60BS2 - symbol:rimM "Ribosome maturation facto... 125 8.4e-07 1
TIGR_CMR|CJE_0810 - symbol:CJE_0810 "ribosomal protein S1... 119 1.9e-06 1
UNIPROTKB|Q81TR5 - symbol:BAS1110 "Putative membrane prot... 132 3.3e-06 1
TIGR_CMR|BA_1201 - symbol:BA_1201 "membrane protein, puta... 132 3.3e-06 1
UNIPROTKB|Q71YM3 - symbol:rimM "Ribosome maturation facto... 119 1.3e-05 1
TAIR|locus:2164585 - symbol:AT5G56940 species:3702 "Arabi... 109 2.2e-05 1
UNIPROTKB|P66444 - symbol:rpsP "30S ribosomal protein S16... 108 2.8e-05 1
TAIR|locus:2139624 - symbol:SSR16 "small subunit ribosoma... 107 3.6e-05 1
TIGR_CMR|APH_0054 - symbol:APH_0054 "ribosomal protein S1... 106 4.7e-05 1
TIGR_CMR|BA_3982 - symbol:BA_3982 "ribosomal protein S16"... 104 7.7e-05 1
TIGR_CMR|CBU_0444 - symbol:CBU_0444 "16S rRNA processing ... 113 0.00012 1
UNIPROTKB|Q2GIL4 - symbol:rimM "Ribosome maturation facto... 113 0.00014 1
TIGR_CMR|APH_1268 - symbol:APH_1268 "16S rRNA processing ... 113 0.00014 1
UNIPROTKB|Q81P70 - symbol:BAS2736 "Membrane protein, puta... 117 0.00020 1
TIGR_CMR|BA_2946 - symbol:BA_2946 "membrane protein, puta... 117 0.00020 1
TIGR_CMR|NSE_0123 - symbol:NSE_0123 "ribosomal protein S1... 100 0.00021 1
>TIGR_CMR|CPS_3613 [details] [associations]
symbol:CPS_3613 "putative fumarate hydratase, class I"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004333
"fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
InterPro:IPR004647 InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 GO:GO:0006091 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0004333 KO:K01676
Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 eggNOG:COG1951 RefSeq:YP_270281.1 STRING:Q47Y39
GeneID:3519670 KEGG:cps:CPS_3613 PATRIC:21470155
HOGENOM:HOG000262369 OMA:MAEAYER ProtClustDB:CLSK864432
BioCyc:CPSY167879:GI48-3635-MONOMER Uniprot:Q47Y39
Length = 507
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 152/244 (62%), Positives = 192/244 (78%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AAKDAIAQILINSRM A+ KRPICQDTGIV F+K+GM V++ + ++ +++EG
Sbjct: 39 EESTAAKDAIAQILINSRMSAQGKRPICQDTGIVTCFVKVGMEVQWDKTDMTVQQMVDEG 98
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
RR Y NP+N LRASIV DP R NT+DNTPAV+++++VPG L+I IA+KGGGSENKT
Sbjct: 99 TRRAYLNPDNPLRASIVKDPAGKRINTKDNTPAVVHIDMVPGAGLEIMIAAKGGGSENKT 158
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
K AMLNPSDS+ DW++KT+PTMGAGWCPP T EKA ++AK+ LM +N+ +
Sbjct: 159 KMAMLNPSDSIADWVVKTLPTMGAGWCPPGMLGIGIGGTAEKAGVLAKESLMDPVNIQDL 218
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
I+ GP+N EELRLE+F ++N LGIGAQG+GGL+TV+DVKI PTHAASKPV +IPNCA
Sbjct: 219 IERGPQNAEEELRLEIFERVNKLGIGAQGLGGLTTVVDVKINSVPTHAASKPVVMIPNCA 278
Query: 242 ATRH 245
ATRH
Sbjct: 279 ATRH 282
>UNIPROTKB|Q9KSF2 [details] [associations]
symbol:VC1304 "Fumarate hydratase, class I, putative"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
InterPro:IPR004647 InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 GenomeReviews:AE003852_GR GO:GO:0006099
GO:GO:0004333 KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00722 TIGRFAMs:TIGR00723 ProtClustDB:CLSK864432
OMA:EWAPNTE EMBL:AE004210 PIR:C82216 RefSeq:NP_230949.1
ProteinModelPortal:Q9KSF2 DNASU:2614758 GeneID:2614758
KEGG:vch:VC1304 PATRIC:20081688 Uniprot:Q9KSF2
Length = 505
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 146/244 (59%), Positives = 192/244 (78%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AAKD+IAQILINSRM A+ RPICQDTGIV F+ IGM V++ + ++ +++EG
Sbjct: 39 EESQAAKDSIAQILINSRMSAEGHRPICQDTGIVTCFVNIGMGVQWDSTDMTVQQMVDEG 98
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VR+ YTNP+N LRAS++ DP R NT+DNTPAV+++ +VPG+ +DI+IA+KGGGSENKT
Sbjct: 99 VRQAYTNPDNPLRASVLMDPAGKRINTKDNTPAVVHINMVPGDKVDIQIAAKGGGSENKT 158
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
K MLNPSD + +W+ KTVP MGAGWCPP T EKA ++AK+ LM+ I+++ +
Sbjct: 159 KMVMLNPSDDIAEWVEKTVPLMGAGWCPPGMLGIGIGGTAEKAAVLAKEALMEHIDIHEL 218
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
I+ GP+N EELRL++FN++N LGIGAQG+GGL+TV+DVKI PTHAASKPV +IPNCA
Sbjct: 219 IERGPQNAEEELRLDIFNRVNKLGIGAQGLGGLTTVVDVKIKSAPTHAASKPVCMIPNCA 278
Query: 242 ATRH 245
ATRH
Sbjct: 279 ATRH 282
>TIGR_CMR|VC_1304 [details] [associations]
symbol:VC_1304 "fumarate hydratase, class I, putative"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004333
"fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
InterPro:IPR004647 InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 GenomeReviews:AE003852_GR GO:GO:0006099
GO:GO:0004333 KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00722 TIGRFAMs:TIGR00723 ProtClustDB:CLSK864432
OMA:EWAPNTE EMBL:AE004210 PIR:C82216 RefSeq:NP_230949.1
ProteinModelPortal:Q9KSF2 DNASU:2614758 GeneID:2614758
KEGG:vch:VC1304 PATRIC:20081688 Uniprot:Q9KSF2
Length = 505
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 146/244 (59%), Positives = 192/244 (78%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AAKD+IAQILINSRM A+ RPICQDTGIV F+ IGM V++ + ++ +++EG
Sbjct: 39 EESQAAKDSIAQILINSRMSAEGHRPICQDTGIVTCFVNIGMGVQWDSTDMTVQQMVDEG 98
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VR+ YTNP+N LRAS++ DP R NT+DNTPAV+++ +VPG+ +DI+IA+KGGGSENKT
Sbjct: 99 VRQAYTNPDNPLRASVLMDPAGKRINTKDNTPAVVHINMVPGDKVDIQIAAKGGGSENKT 158
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
K MLNPSD + +W+ KTVP MGAGWCPP T EKA ++AK+ LM+ I+++ +
Sbjct: 159 KMVMLNPSDDIAEWVEKTVPLMGAGWCPPGMLGIGIGGTAEKAAVLAKEALMEHIDIHEL 218
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
I+ GP+N EELRL++FN++N LGIGAQG+GGL+TV+DVKI PTHAASKPV +IPNCA
Sbjct: 219 IERGPQNAEEELRLDIFNRVNKLGIGAQGLGGLTTVVDVKIKSAPTHAASKPVCMIPNCA 278
Query: 242 ATRH 245
ATRH
Sbjct: 279 ATRH 282
>TIGR_CMR|SO_2222 [details] [associations]
symbol:SO_2222 "fumarate hydratase, class I, anaerobic,
putative" species:211586 "Shewanella oneidensis MR-1" [GO:0004333
"fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
InterPro:IPR004647 InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 GO:GO:0006091 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0004333 KO:K01676
Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 HOGENOM:HOG000262369 OMA:MAEAYER
ProtClustDB:CLSK864432 RefSeq:NP_717819.1 ProteinModelPortal:Q8EEY7
GeneID:1169959 KEGG:son:SO_2222 PATRIC:23524075 Uniprot:Q8EEY7
Length = 516
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 144/244 (59%), Positives = 191/244 (78%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AAKDAIAQILINSRM A+ KRP+CQDTGIV F+K+GM V++ + +I +++EG
Sbjct: 48 EQSAAAKDAIAQILINSRMSAEGKRPLCQDTGIVTTFVKVGMGVKWDKTDMTIQQMVDEG 107
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VRR YTNP+N LRASIV+DP RKNT+DNTP+V+++++VPGN +++ IA+KGGGSENK
Sbjct: 108 VRRAYTNPDNPLRASIVADPAGSRKNTKDNTPSVVHIDMVPGNHVEVAIAAKGGGSENKA 167
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
K MLNPSD + W+ KT+PTMGAGWCPP T EKA ++AK+ LM+ ++++ +
Sbjct: 168 KMVMLNPSDDIAAWVEKTLPTMGAGWCPPGMLGIGIGGTAEKAAVLAKEALMESVDIHEL 227
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
+ G + E+LRL++F + N+LGIGAQG+GGL+TVLDVKI PTHAASKPV +IPNCA
Sbjct: 228 MARGAQTTEEKLRLDIFERANNLGIGAQGLGGLTTVLDVKIKSAPTHAASKPVVMIPNCA 287
Query: 242 ATRH 245
ATRH
Sbjct: 288 ATRH 291
>TIGR_CMR|SPO_1498 [details] [associations]
symbol:SPO_1498 "fumarate hydratase, class I, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004333 "fumarate
hydratase activity" evidence=ISS] [GO:0006099 "tricarboxylic acid
cycle" evidence=ISS] InterPro:IPR004646 InterPro:IPR004647
InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683 PIRSF:PIRSF001394
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006091 GO:GO:0004333
KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 HOGENOM:HOG000262369 ProtClustDB:CLSK864432
RefSeq:YP_166739.1 ProteinModelPortal:Q5LTB6 GeneID:3195115
KEGG:sil:SPO1498 PATRIC:23376313 OMA:EWAPNTE Uniprot:Q5LTB6
Length = 502
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 127/244 (52%), Positives = 184/244 (75%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AK A+AQIL+NSRMCA +RPICQDTG N+ +K+G+ + F+ S+ ++ +EG
Sbjct: 39 EENPGAKAAMAQILVNSRMCAMGRRPICQDTGAANIHVKVGVQAK-TDFSRSLQEICDEG 97
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
R+GY N LRAS+V DP RKN+ DNTP ++ +E+V G+ +++++A+KGGGSENK+
Sbjct: 98 TRQGYQRDTNPLRASVVVDPFGARKNSGDNTPCMLTVEMVAGDTIEVEVAAKGGGSENKS 157
Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
KF LNPS ++ DW+++TV T+GAGWCPP +KAM +AK+ L + ++M+ +
Sbjct: 158 KFTTLNPSGNVADWVVQTVETLGAGWCPPGVLGIGVGGNADKAMALAKQALSEPLDMSDL 217
Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
++ GP +K EELRLE+++++N+LGIGAQG+GG++TVLDVKI +PTHAAS PV +IPNCA
Sbjct: 218 LRRGPSDKTEELRLEIYDRVNALGIGAQGLGGVTTVLDVKIKSFPTHAASLPVGLIPNCA 277
Query: 242 ATRH 245
ATRH
Sbjct: 278 ATRH 281
>TIGR_CMR|CHY_1375 [details] [associations]
symbol:CHY_1375 "fumarate hydratase, alpha subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009061 "anaerobic
respiration" evidence=ISS] InterPro:IPR004646 Pfam:PF05681
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016829
TIGRFAMs:TIGR00722 eggNOG:COG1951 HOGENOM:HOG000225707
RefSeq:YP_360207.1 STRING:Q3ACC7 GeneID:3727041 KEGG:chy:CHY_1375
PATRIC:21275883 KO:K01677 OMA:IETYPTH ProtClustDB:PRK06246
BioCyc:CHYD246194:GJCN-1374-MONOMER Uniprot:Q3ACC7
Length = 280
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 106/247 (42%), Positives = 146/247 (59%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ K + +++ N+++ E+ PICQDTG +FL+IG +V G G +HD IN+G
Sbjct: 39 EESEVGKKILQRVIENAQIAKDEELPICQDTGTAVIFLEIGQDVHLVG--GDLHDAINQG 96
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VR GY+ LR SIV DP R NT DNTPAV+++++VPG+ + I +A KGGGSEN +
Sbjct: 97 VREGYSE--GYLRKSIVKDP-LNRVNTGDNTPAVVHIDIVPGDRVKITVAPKGGGSENMS 153
Query: 122 KFAMLNPSDSLV---DWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINM 178
+ ML P+D + +++ TV G+ CPP T EKA L+AKK L++++
Sbjct: 154 QLKMLKPADGVEGVKQFVIDTVRQAGSNPCPPIIVGVGIGGTFEKAALLAKKALLREVGT 213
Query: 179 NSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIP 238
+ P L EL KIN+LGIG QG+GG T L V I YPTH AS PVA+
Sbjct: 214 QN-----PDPFYNSLERELLEKINNLGIGPQGLGGRVTALAVHIETYPTHIASLPVAVNL 268
Query: 239 NCAATRH 245
NC RH
Sbjct: 269 NCHVARH 275
>TIGR_CMR|DET_0453 [details] [associations]
symbol:DET_0453 "fumarate hydratase, alpha subunit,
putative" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] InterPro:IPR004646
Pfam:PF05681 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829
TIGRFAMs:TIGR00722 eggNOG:COG1951 HOGENOM:HOG000225707 KO:K01677
OMA:IETYPTH ProtClustDB:PRK06246 RefSeq:YP_181197.1 STRING:Q3Z9A2
GeneID:3230197 KEGG:det:DET0453 PATRIC:21607975
BioCyc:DETH243164:GJNF-453-MONOMER Uniprot:Q3Z9A2
Length = 280
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 99/244 (40%), Positives = 141/244 (57%)
Query: 6 AAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRG 65
A +D + +L N+ + ++K P+CQDTG VF + G +V NG++ D IN GVR+G
Sbjct: 43 AGRDILLSLLENACIAGEKKIPLCQDTGTAIVFAEAGQDVHI---NGNLVDAINLGVRQG 99
Query: 66 YTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAM 125
Y LR SIVS P R NTQDNTPAVI+ E+VPG+ L + +KG G+EN ++ M
Sbjct: 100 YEQA--YLRKSIVSQPFSERVNTQDNTPAVIHTEIVPGDRLKLSFMAKGSGAENMSRLFM 157
Query: 126 LNPS---DSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSII 182
L P + +++ +++TV G CPP T EKAM MAKK L++ + ++S
Sbjct: 158 LKPGVGHEGVIEAVLETVENAGGSPCPPIIIGLGVGATAEKAMFMAKKALLRPLGVSS-- 215
Query: 183 KNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAA 242
P+ ++ L E+ ++N LGIG G+GG T L V PTH AS PVA+ C +
Sbjct: 216 ---PEAEVAALEAEVLKRVNGLGIGPLGLGGRVTALGVMAEAAPTHIASLPVAVNLQCHS 272
Query: 243 TRHG 246
RHG
Sbjct: 273 ARHG 276
>TIGR_CMR|CHY_0061 [details] [associations]
symbol:CHY_0061 "fumarate hydratase, alpha subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004333 "fumarate hydratase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009061 "anaerobic
respiration" evidence=ISS] InterPro:IPR004646 Pfam:PF05681
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0004333
TIGRFAMs:TIGR00722 eggNOG:COG1951 HOGENOM:HOG000225707 KO:K01677
ProtClustDB:PRK06246 RefSeq:YP_358933.1 STRING:Q3AG01
GeneID:3727347 KEGG:chy:CHY_0061 PATRIC:21273319
BioCyc:CHYD246194:GJCN-61-MONOMER Uniprot:Q3AG01
Length = 281
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 105/249 (42%), Positives = 147/249 (59%)
Query: 1 MEKGIAAKDAIAQILI-NSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVIN 59
ME+ K+ I +ILI N+ + +E+ ICQDTG+ VF++IG +V G G++ D +N
Sbjct: 38 MEESPIGKE-IFEILIKNAEIAREEEMAICQDTGMAVVFMEIGQDVHIVG--GNLEDAVN 94
Query: 60 EGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSEN 119
GV +GY LR S+V +P F R NT++NTPAVI++ +VPG+ + I +A KG GSEN
Sbjct: 95 AGVAKGYLE--GYLRKSVVEEPLFNRVNTKNNTPAVIHVSIVPGDKVKIVLAPKGFGSEN 152
Query: 120 KTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDI 176
+ M PSD ++ +++ TV G+ CPP T EKA L+AKK L++ +
Sbjct: 153 MSALRMFKPSDGIEAIKKFVVDTVVNAGSNPCPPIVIGIGIGGTMEKAALLAKKALIRPL 212
Query: 177 NMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAI 236
N I+N + L EL +N+ GIG QG+GG T L V I +PTH A PVAI
Sbjct: 213 N----IRNSHP-QYAALEQELLELVNNTGIGPQGLGGRITALAVNIEWFPTHIAGLPVAI 267
Query: 237 IPNCAATRH 245
NC ATRH
Sbjct: 268 NINCHATRH 276
>UNIPROTKB|P05847 [details] [associations]
symbol:ttdA "L-tartrate dehydratase, alpha subunit"
species:83333 "Escherichia coli K-12" [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0008730 "L(+)-tartrate dehydratase activity" evidence=IEA]
[GO:0042710 "biofilm formation" evidence=IMP] InterPro:IPR004646
Pfam:PF05681 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 EMBL:U28379
GO:GO:0042710 TIGRFAMs:TIGR00722 eggNOG:COG1951 EMBL:M16194
EMBL:L14781 PIR:C65094 RefSeq:NP_417533.1 RefSeq:YP_491253.1
ProteinModelPortal:P05847 IntAct:P05847 PRIDE:P05847
EnsemblBacteria:EBESCT00000001624 EnsemblBacteria:EBESCT00000018261
GeneID:12934302 GeneID:947565 KEGG:ecj:Y75_p2987 KEGG:eco:b3061
PATRIC:32121536 EchoBASE:EB1156 EcoGene:EG11168
HOGENOM:HOG000225707 KO:K03779 OMA:VNACPPL ProtClustDB:PRK08230
BioCyc:EcoCyc:TTDA-MONOMER BioCyc:ECOL316407:JW3033-MONOMER
BioCyc:MetaCyc:TTDA-MONOMER Genevestigator:P05847 GO:GO:0008730
Uniprot:P05847
Length = 303
Score = 228 (85.3 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 67/245 (27%), Positives = 109/245 (44%)
Query: 26 RPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
RP CQDTG + F+K+G RF G + ++ + V A + D
Sbjct: 68 RPACQDTGEIMFFVKVGS--RFP-LLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTG 124
Query: 86 KNTQDNTPAVINMELVPGNF-LDIKIASKGGGSENKTKFAMLNPSDS---LVDWIMKTVP 141
KNT P V +++P N +I++ GGG + +L PS+ +V ++ + +
Sbjct: 125 KNTGSGVPWV-TWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENIS 183
Query: 142 TMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKI 201
T+ CPP + E A ++++K +++ I P K EL L L +
Sbjct: 184 TLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRH-----PNPKAAELELRLEEGL 238
Query: 202 NSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGFLLFWISIKLLSNDH 261
N LGIG QG+ G S+V+ V I H ++ VA+ C A R G LL + + H
Sbjct: 239 NRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSH 298
Query: 262 NYTTI 266
+ +
Sbjct: 299 TRSAL 303
>TIGR_CMR|GSU_0994 [details] [associations]
symbol:GSU_0994 "fumarate hydratase, class I"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004333 "fumarate
hydratase activity" evidence=ISS] [GO:0006099 "tricarboxylic acid
cycle" evidence=ISS] InterPro:IPR004646 InterPro:IPR004647
InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683 PIRSF:PIRSF001394
GO:GO:0006091 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004333
HOGENOM:HOG000009338 KO:K01676 OMA:AIVMGKK Gene3D:3.20.130.10
SUPFAM:SSF117457 TIGRFAMs:TIGR00722 TIGRFAMs:TIGR00723
RefSeq:NP_952048.1 ProteinModelPortal:Q74EG8 DNASU:2685809
GeneID:2685809 KEGG:gsu:GSU0994 PATRIC:22024758
ProtClustDB:PRK15389 BioCyc:GSUL243231:GH27-965-MONOMER
Uniprot:Q74EG8
Length = 541
Score = 226 (84.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 77/253 (30%), Positives = 118/253 (46%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
+KG+A +A L N+ + A + PICQDTG V K G V + G G + +++G
Sbjct: 85 DKGVA----LA-FLRNAEISANFELPICQDTGTATVIAKKGQQV-WTG--GKDEEYLSKG 136
Query: 62 VRRGYTNPNNILRAS-IVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENK 120
V + YT N LR S V+ + NT N PA + ++ V G+ +KGGGS NK
Sbjct: 137 VYKTYTEEN--LRYSQTVALNMYDEINTGTNLPAQVEIQAVDGDAYKFLFMAKGGGSANK 194
Query: 121 TKF-----AMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXX-TPEKAMLMAKKVLMQ 174
T A+L P + L +++ + +G CPP + ++ M K +
Sbjct: 195 TMLFQETKALLTP-EKLEKFLVDKMKYLGTAACPPYHIAVVVGGCSADQCMKTVKLASAK 253
Query: 175 DINMNSIIKNGPKNKIEELRLE--LFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASK 232
++ N ++ LE L LGIGAQ GG DV+++ P H AS
Sbjct: 254 YLDALPTQGNEHGQAFRDVELEEKLLQAAYKLGIGAQ-FGGKYFAHDVRVIRLPRHGASC 312
Query: 233 PVAIIPNCAATRH 245
PV + +C+A R+
Sbjct: 313 PVGMAVSCSADRN 325
>UNIPROTKB|P14407 [details] [associations]
symbol:fumB species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0042710 "biofilm formation" evidence=IMP] [GO:0047808
"D(-)-tartrate dehydratase activity" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004333 "fumarate hydratase activity" evidence=IEA;IDA]
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA;IGI]
InterPro:IPR004646 InterPro:IPR004647 InterPro:IPR011167
InterPro:IPR020557 Pfam:PF05681 Pfam:PF05683 PIRSF:PIRSF001394
PROSITE:PS00163 UniPathway:UPA00223 GO:GO:0005829 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0006099 GO:GO:0006974 GO:GO:0051539 EMBL:U14003
GO:GO:0042710 EMBL:M27058 GO:GO:0004333 HOGENOM:HOG000009338
KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 PIR:A65222 RefSeq:NP_418546.1 RefSeq:YP_492265.1
ProteinModelPortal:P14407 SMR:P14407 IntAct:P14407 PRIDE:P14407
EnsemblBacteria:EBESCT00000002330 EnsemblBacteria:EBESCT00000002331
EnsemblBacteria:EBESCT00000002332 EnsemblBacteria:EBESCT00000016910
GeneID:12933156 GeneID:948642 KEGG:ecj:Y75_p4009 KEGG:eco:b4122
PATRIC:32123809 EchoBASE:EB0352 EcoGene:EG10357 eggNOG:COG1951
OMA:PFPLAHD ProtClustDB:PRK15391 BioCyc:EcoCyc:FUMB-MONOMER
BioCyc:ECOL316407:JW4083-MONOMER BioCyc:MetaCyc:FUMB-MONOMER
SABIO-RK:P14407 Genevestigator:P14407 GO:GO:0047808 Uniprot:P14407
Length = 548
Score = 224 (83.9 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 72/241 (29%), Positives = 109/241 (45%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V + G G + +++GV Y N
Sbjct: 89 QFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQRV-WTG--GGDEETLSKGVYNTYIEDNLR 145
Query: 73 LRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AMLN 127
+ D + NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 146 YSQNAALDM-YKEVNTGTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLT 204
Query: 128 PSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQ---DINMNSIIKN 184
P L +++++ + T+G CPP T + L K+ D ++
Sbjct: 205 PG-KLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNEH 263
Query: 185 GPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATR 244
G + +L EL + LG+GAQ GG D++++ P H AS PV + +C+A R
Sbjct: 264 GQAFRDVQLEQELLEEAQKLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADR 322
Query: 245 H 245
+
Sbjct: 323 N 323
>UNIPROTKB|P0AC33 [details] [associations]
symbol:fumA species:83333 "Escherichia coli K-12"
[GO:0004333 "fumarate hydratase activity" evidence=IEA;IDA;NAS]
[GO:0050163 "oxaloacetate tautomerase activity" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA;IEP;IMP] InterPro:IPR004646 InterPro:IPR004647
InterPro:IPR011167 InterPro:IPR020557 Pfam:PF05681 Pfam:PF05683
PIRSF:PIRSF001394 PROSITE:PS00163 UniPathway:UPA00223 GO:GO:0005829
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006099 GO:GO:0051539
GO:GO:0004333 EMBL:X00522 PIR:A03531 RefSeq:NP_416129.1
RefSeq:YP_489875.1 ProteinModelPortal:P0AC33 SMR:P0AC33
DIP:DIP-36200N IntAct:P0AC33 MINT:MINT-1310290 PaxDb:P0AC33
PRIDE:P0AC33 EnsemblBacteria:EBESCT00000003292
EnsemblBacteria:EBESCT00000014684 GeneID:12934128 GeneID:946826
KEGG:ecj:Y75_p1588 KEGG:eco:b1612 PATRIC:32118526 EchoBASE:EB0351
EcoGene:EG10356 eggNOG:COG1838 HOGENOM:HOG000009338 KO:K01676
OMA:AIVMGKK ProtClustDB:PRK15390 BioCyc:EcoCyc:FUMA-MONOMER
BioCyc:ECOL316407:JW1604-MONOMER BioCyc:MetaCyc:FUMA-MONOMER
SABIO-RK:P0AC33 Genevestigator:P0AC33 GO:GO:0050163
Gene3D:3.20.130.10 SUPFAM:SSF117457 TIGRFAMs:TIGR00722
TIGRFAMs:TIGR00723 Uniprot:P0AC33
Length = 548
Score = 216 (81.1 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 75/242 (30%), Positives = 110/242 (45%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V + G G + GV Y N
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRV-WTG--GGDEAALARGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQ---DINMNSIIK 183
P L +++++ + T+G CPP T + L K+ D +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + EL EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RH 245
R+
Sbjct: 322 RN 323
>TIGR_CMR|CBU_0445 [details] [associations]
symbol:CBU_0445 "ribosomal protein S16" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 RefSeq:NP_819482.2 ProteinModelPortal:Q83E83
PRIDE:Q83E83 GeneID:1208329 KEGG:cbu:CBU_0445 PATRIC:17929581
OMA:DLARVDH ProtClustDB:PRK14523 BioCyc:CBUR227377:GJ7S-443-MONOMER
Uniprot:Q83E83
Length = 137
Score = 143 (55.4 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
D R RDGRFIER+G+YNP+A ++ + ++ R ++W GA+TSL V HLI
Sbjct: 23 DRRKPRDGRFIERVGYYNPMARGQDIRLQLEKERISHWLNQGAQTSLRVKHLI 75
>UNIPROTKB|Q8EH71 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840 GO:GO:0043022
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 ProtClustDB:PRK00122
OMA:RRIVVDW RefSeq:NP_716978.2 ProteinModelPortal:Q8EH71
GeneID:1169179 KEGG:son:SO_1358 PATRIC:23522370 Uniprot:Q8EH71
Length = 177
Score = 142 (55.0 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 38/132 (28%), Positives = 62/132 (46%)
Query: 405 ITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYV 463
+ +G + +GI GW+ I + D + IF Y+ W N + +K++ + G V
Sbjct: 9 VVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSP--WLIKENG-EWREVKVIQWRYQGKAV 65
Query: 464 LANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTE 523
+A L G+T R A L + I L D FYW +LI C V N G +G V +
Sbjct: 66 VAELEGVTTRERAQMLTNCEIGILPQQM-NALPEDEFYWRDLIGCEVINTTGYNMGIVDQ 124
Query: 524 IIQNKVHSILRI 535
I++ + +L +
Sbjct: 125 IVETGSNDVLLV 136
>TIGR_CMR|SO_1358 [details] [associations]
symbol:SO_1358 "16S rRNA processing protein RimM"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0006364 "rRNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 GO:GO:0005840 GO:GO:0043022 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006364 InterPro:IPR011033
SUPFAM:SSF50346 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273
ProtClustDB:PRK00122 OMA:RRIVVDW RefSeq:NP_716978.2
ProteinModelPortal:Q8EH71 GeneID:1169179 KEGG:son:SO_1358
PATRIC:23522370 Uniprot:Q8EH71
Length = 177
Score = 142 (55.0 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 38/132 (28%), Positives = 62/132 (46%)
Query: 405 ITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYV 463
+ +G + +GI GW+ I + D + IF Y+ W N + +K++ + G V
Sbjct: 9 VVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSP--WLIKENG-EWREVKVIQWRYQGKAV 65
Query: 464 LANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTE 523
+A L G+T R A L + I L D FYW +LI C V N G +G V +
Sbjct: 66 VAELEGVTTRERAQMLTNCEIGILPQQM-NALPEDEFYWRDLIGCEVINTTGYNMGIVDQ 124
Query: 524 IIQNKVHSILRI 535
I++ + +L +
Sbjct: 125 IVETGSNDVLLV 136
>TIGR_CMR|BA_0423 [details] [associations]
symbol:BA_0423 "fumarate hydratase, class I" species:198094
"Bacillus anthracis str. Ames" [GO:0004333 "fumarate hydratase
activity" evidence=ISS] [GO:0006099 "tricarboxylic acid cycle"
evidence=ISS] InterPro:IPR004646 InterPro:IPR004647
InterPro:IPR011167 Pfam:PF05681 Pfam:PF05683 PIRSF:PIRSF001394
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006091
GO:GO:0004333 KO:K01676 Gene3D:3.20.130.10 SUPFAM:SSF117457
TIGRFAMs:TIGR00722 TIGRFAMs:TIGR00723 RefSeq:NP_842966.1
RefSeq:YP_017048.1 RefSeq:YP_026690.1 ProteinModelPortal:Q81Z50
DNASU:1087739 EnsemblBacteria:EBBACT00000010911
EnsemblBacteria:EBBACT00000014345 EnsemblBacteria:EBBACT00000023609
GeneID:1087739 GeneID:2817640 GeneID:2847870 KEGG:ban:BA_0423
KEGG:bar:GBAA_0423 KEGG:bat:BAS0410 HOGENOM:HOG000262370
OMA:IEGEVTM ProtClustDB:CLSK872861
BioCyc:BANT260799:GJAJ-452-MONOMER
BioCyc:BANT261594:GJ7F-461-MONOMER Uniprot:Q81Z50
Length = 506
Score = 164 (62.8 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 72/257 (28%), Positives = 114/257 (44%)
Query: 4 GIAAKDAIAQILINSRMCAKEKRPICQDTGI--VNVFLKIGMNVRFKGFNGSIHDVINEG 61
G + A+ I N +M PICQDTG+ ++ +G+N + K +I+ +
Sbjct: 37 GTRSAMALGTITNNIKMADDNISPICQDTGMPTFKIYTPVGVN-QLK-LKEAIYHALERA 94
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
+ G PN++ S+ D N TP VI E +++D ++ KGGG ENK
Sbjct: 95 TKDGKLRPNSV--DSLFGDNS--GNNLGPGTP-VIKFEQWEKDYIDARLILKGGGCENKN 149
Query: 122 -KFAMLNPSDSL------VDWIMKTV-----PTMGAGWCPPXXXXXXXXXTPEKAMLMAK 169
++++ + L ++ I K + G G C +AK
Sbjct: 150 IQYSLPCELEGLGRAGRDLEGIRKCLLHAVYQAQGQG-CSAGVIGVGIGGDRTSGYELAK 208
Query: 170 KVLMQDIN-MNSIIKNGPK-NKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPT 227
L + ++ +N I P+ ++EE LE NK LGIG G GG +T+L KI +Y
Sbjct: 209 NQLFRTLDDVNPI----PELQQLEEYVLENANK---LGIGTMGFGGETTLLGCKIGVYNR 261
Query: 228 HAASKPVAIIPNCAATR 244
AS V++ NC A R
Sbjct: 262 LPASFYVSVAYNCWAYR 278
>UNIPROTKB|P0A7T3 [details] [associations]
symbol:rpsP "30S ribosomal subunit protein S16"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0000028 "ribosomal small subunit
assembly" evidence=IDA] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0043566 "structure-specific DNA
binding" evidence=IDA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0003735 GO:GO:0004520 PDB:3J00 PDBsum:3J00
GO:GO:0000028 PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH PDBsum:3IZV
PDBsum:3IZW GO:GO:0022627 GO:GO:0043566 PDB:3SFS PDB:3UOQ
PDBsum:3SFS PDBsum:3UOQ EMBL:X01818 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 PDB:4GAS PDB:4GD1 PDBsum:4GAS
PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY
PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN
PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU
PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO PDB:2VHP PDB:2WWL PDB:2YKR
PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3 PDB:3E1A PDB:3E1C PDB:3I1M
PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V
PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ
PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY
PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G
PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U
PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD
PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW
PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO PDBsum:2VHP PDBsum:2WWL
PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3
PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q
PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U PDBsum:3J0V
PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13 PDBsum:3J18
PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB
PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9
PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2
eggNOG:COG0228 HOGENOM:HOG000246720 OMA:KRMGAHK
ProtClustDB:PRK00040 PIR:S07948 RefSeq:NP_417100.1
RefSeq:YP_490832.1 ProteinModelPortal:P0A7T3 SMR:P0A7T3
DIP:DIP-47829N IntAct:P0A7T3 MINT:MINT-1280042 PaxDb:P0A7T3
PRIDE:P0A7T3 EnsemblBacteria:EBESCT00000001904
EnsemblBacteria:EBESCT00000014322 GeneID:12930606 GeneID:947103
KEGG:ecj:Y75_p2557 KEGG:eco:b2609 PATRIC:32120617 EchoBASE:EB0908
EcoGene:EG10915 BioCyc:EcoCyc:EG10915-MONOMER
BioCyc:ECOL316407:JW2590-MONOMER EvolutionaryTrace:P0A7T3
Genevestigator:P0A7T3 Uniprot:P0A7T3
Length = 82
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 28/53 (52%), Positives = 39/53 (73%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
DSRN+R+GRFIER+GF+NP+AS+KE+ ++ L+R +W GA S V LI
Sbjct: 23 DSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALI 75
>UNIPROTKB|P66653 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0005840 GO:GO:0043022 EMBL:BX842581
GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 OMA:DEFYDHE ProtClustDB:PRK00122 PIR:F70927
RefSeq:NP_217423.1 RefSeq:NP_337487.1 RefSeq:YP_006516360.1
ProteinModelPortal:P66653 SMR:P66653 PRIDE:P66653
EnsemblBacteria:EBMYCT00000002416 EnsemblBacteria:EBMYCT00000072696
GeneID:13317700 GeneID:887188 GeneID:925303 KEGG:mtc:MT2975
KEGG:mtu:Rv2907c KEGG:mtv:RVBD_2907c PATRIC:18128310
TubercuList:Rv2907c HOGENOM:HOG000220991 Uniprot:P66653
Length = 176
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/136 (26%), Positives = 67/136 (49%)
Query: 405 ITIGVVLRAYGIFGWILIKLFLDDKNIFFYA----RKIWFFDPNSL-KLFSIKILNKKNH 459
+ +G V++++G+ G +++++ DD F R FD + S I + + H
Sbjct: 3 LVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVRQH 62
Query: 460 GNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLG 519
G +L L G+ DR+ A L+G I +D P + DT+Y L+ +V+ G+ +G
Sbjct: 63 GGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEGVG 122
Query: 520 TVTEIIQNKVHSILRI 535
VTE++ +L +
Sbjct: 123 VVTEVVHTAAGELLAV 138
>TIGR_CMR|CPS_4069 [details] [associations]
symbol:CPS_4069 "ribosomal protein S16" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
RefSeq:YP_270724.1 ProteinModelPortal:Q47WU8 SMR:Q47WU8
STRING:Q47WU8 GeneID:3519834 KEGG:cps:CPS_4069 PATRIC:21471013
OMA:DSRNSRD BioCyc:CPSY167879:GI48-4082-MONOMER Uniprot:Q47WU8
Length = 81
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
DSRNSRDGRFIE++GF+NP A + +K ++ L+R T+W GA S V L+
Sbjct: 23 DSRNSRDGRFIEKVGFFNPTAQGQAEKLRLDLDRITHWVGQGATVSDRVAKLV 75
>UNIPROTKB|Q3AC71 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_00014
InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 HOGENOM:HOG000220990 RefSeq:YP_360263.1
ProteinModelPortal:Q3AC71 STRING:Q3AC71 GeneID:3727919
KEGG:chy:CHY_1431 PATRIC:21275993 OMA:ENIREHN
BioCyc:CHYD246194:GJCN-1430-MONOMER Uniprot:Q3AC71
Length = 172
Score = 138 (53.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 37/135 (27%), Positives = 68/135 (50%)
Query: 401 VDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHG 460
+++LI IG VL +GI GW+ ++ D F ++ F++ ++F ++I +
Sbjct: 1 MNNLIAIGYVLGTFGIEGWVKVEPLTDHPQRFLNTERV-FWEKED-EIFPLRIEEVQLQA 58
Query: 461 NYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGT 520
+L I D A KL YLKI N+ +L ++ FY F L V +++ + +G
Sbjct: 59 ERILVKFMEINDIKEANKLIFGYLKIPKNEIVQLKENE-FYLFQLKGLTVYDLNYQKIGV 117
Query: 521 VTEIIQNKVHSILRI 535
V +++N + +L I
Sbjct: 118 VRTVLKNPANDLLVI 132
>TIGR_CMR|CHY_1431 [details] [associations]
symbol:CHY_1431 "16S rRNA processing protein RimM"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006364 "rRNA
processing" evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 HOGENOM:HOG000220990 RefSeq:YP_360263.1
ProteinModelPortal:Q3AC71 STRING:Q3AC71 GeneID:3727919
KEGG:chy:CHY_1431 PATRIC:21275993 OMA:ENIREHN
BioCyc:CHYD246194:GJCN-1430-MONOMER Uniprot:Q3AC71
Length = 172
Score = 138 (53.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 37/135 (27%), Positives = 68/135 (50%)
Query: 401 VDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHG 460
+++LI IG VL +GI GW+ ++ D F ++ F++ ++F ++I +
Sbjct: 1 MNNLIAIGYVLGTFGIEGWVKVEPLTDHPQRFLNTERV-FWEKED-EIFPLRIEEVQLQA 58
Query: 461 NYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGT 520
+L I D A KL YLKI N+ +L ++ FY F L V +++ + +G
Sbjct: 59 ERILVKFMEINDIKEANKLIFGYLKIPKNEIVQLKENE-FYLFQLKGLTVYDLNYQKIGV 117
Query: 521 VTEIIQNKVHSILRI 535
V +++N + +L I
Sbjct: 118 VRTVLKNPANDLLVI 132
>UNIPROTKB|Q47WU9 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840 GO:GO:0043022
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 ProtClustDB:PRK00122
RefSeq:YP_270723.1 ProteinModelPortal:Q47WU9 STRING:Q47WU9
DNASU:3522124 GeneID:3522124 KEGG:cps:CPS_4068 PATRIC:21471011
OMA:RRIVVDW BioCyc:CPSY167879:GI48-4081-MONOMER Uniprot:Q47WU9
Length = 176
Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 43/138 (31%), Positives = 68/138 (49%)
Query: 400 TVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFS----IKILN 455
T + I +G V YGI GW+ I F D+ + +F P SLKL + ++I +
Sbjct: 3 TEEKKIILGKVGAVYGIKGWLKIHSFTDETEAI-----LDYF-PWSLKLGNNTQTVEITD 56
Query: 456 KKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHG 515
+ H ++ + GI DR+ A L G + + P+L S D FYW +LI V G
Sbjct: 57 WRKHNKVLIVKVAGIDDRDEAQALVGSEILTNEAALPEL-SEDDFYWRDLIGMSVVTNKG 115
Query: 516 KLLGTVTEIIQNKVHSIL 533
LG VT++++ + +L
Sbjct: 116 YDLGVVTDMMETGANDVL 133
>TIGR_CMR|CPS_4068 [details] [associations]
symbol:CPS_4068 "16S rRNA processing protein RimM"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0006364 "rRNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 GO:GO:0005840 GO:GO:0043022 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006364 InterPro:IPR011033
SUPFAM:SSF50346 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273
ProtClustDB:PRK00122 RefSeq:YP_270723.1 ProteinModelPortal:Q47WU9
STRING:Q47WU9 DNASU:3522124 GeneID:3522124 KEGG:cps:CPS_4068
PATRIC:21471011 OMA:RRIVVDW BioCyc:CPSY167879:GI48-4081-MONOMER
Uniprot:Q47WU9
Length = 176
Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 43/138 (31%), Positives = 68/138 (49%)
Query: 400 TVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFS----IKILN 455
T + I +G V YGI GW+ I F D+ + +F P SLKL + ++I +
Sbjct: 3 TEEKKIILGKVGAVYGIKGWLKIHSFTDETEAI-----LDYF-PWSLKLGNNTQTVEITD 56
Query: 456 KKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHG 515
+ H ++ + GI DR+ A L G + + P+L S D FYW +LI V G
Sbjct: 57 WRKHNKVLIVKVAGIDDRDEAQALVGSEILTNEAALPEL-SEDDFYWRDLIGMSVVTNKG 115
Query: 516 KLLGTVTEIIQNKVHSIL 533
LG VT++++ + +L
Sbjct: 116 YDLGVVTDMMETGANDVL 133
>TIGR_CMR|SO_1357 [details] [associations]
symbol:SO_1357 "ribosomal protein S16" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:DSRNSRD RefSeq:NP_716977.1
ProteinModelPortal:Q8EH72 SMR:Q8EH72 GeneID:1169178
KEGG:son:SO_1357 PATRIC:23522368 Uniprot:Q8EH72
Length = 82
Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
DSRN+RDGRFIER+GF+NPLA +E+ ++ L R +W GA T+ V LI
Sbjct: 23 DSRNARDGRFIERVGFFNPLARGQEETLRLDLARVEHWVANGAATTDRVAKLI 75
>UNIPROTKB|P0A7X6 [details] [associations]
symbol:rimM species:83333 "Escherichia coli K-12"
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0000028 "ribosomal small
subunit assembly" evidence=IMP] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0005840
GO:GO:0043022 GO:GO:0030490 InterPro:IPR011033 SUPFAM:SSF50346
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273
ProtClustDB:PRK00122 OMA:RRIVVDW EMBL:X01818 PIR:C65039
RefSeq:NP_417099.4 RefSeq:YP_490831.1 ProteinModelPortal:P0A7X6
SMR:P0A7X6 SWISS-2DPAGE:P0A7X6 PRIDE:P0A7X6
EnsemblBacteria:EBESCT00000002494 EnsemblBacteria:EBESCT00000014623
GeneID:12934077 GeneID:947101 KEGG:ecj:Y75_p2556 KEGG:eco:b2608
PATRIC:32120615 EchoBASE:EB1142 EcoGene:EG11153
BioCyc:EcoCyc:EG11153-MONOMER BioCyc:ECOL316407:JW5413-MONOMER
Genevestigator:P0A7X6 Uniprot:P0A7X6
Length = 182
Score = 136 (52.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 39/146 (26%), Positives = 75/146 (51%)
Query: 391 KQVGAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLF 449
KQ+ A+ VD ++ +G + +YGI GW+ + +D ++IF Y + WF +
Sbjct: 3 KQLTAQAP--VDPIV-LGKMGSSYGIRGWLRVFSSTEDAESIFDY--QPWFIQKAG-QWQ 56
Query: 450 SIKILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCI 509
+++ + K+H ++ L G+ DR+ A L + + + P+L D +YW +L+ C
Sbjct: 57 QVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQ 115
Query: 510 VENIHGKLLGTVTEIIQNKVHSILRI 535
V G LG V ++++ + +L I
Sbjct: 116 VVTTEGYDLGKVVDMMETGSNDVLVI 141
>UNIPROTKB|Q9KUF9 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0006396
GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 ProtClustDB:PRK00122 OMA:RRIVVDW PIR:B82307
RefSeq:NP_230213.1 ProteinModelPortal:Q9KUF9 DNASU:2615239
GeneID:2615239 KEGG:vch:VC0562 PATRIC:20080242 Uniprot:Q9KUF9
Length = 182
Score = 135 (52.6 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 38/141 (26%), Positives = 66/141 (46%)
Query: 394 GAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIK 452
G +T + + +G + +YGI GW+ + + D+ ++IF Y+ W+ D + K
Sbjct: 3 GKETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSP--WYIDQKG-EWVEYK 59
Query: 453 ILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVEN 512
+ K H + L G+ R A L + + I P+L S D FYW L V
Sbjct: 60 VEGWKRHNKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPEL-SEDEFYWRELFGMQVVT 118
Query: 513 IHGKLLGTVTEIIQNKVHSIL 533
+G LG VT++++ + +L
Sbjct: 119 TNGYDLGVVTDMMETGSNDVL 139
>TIGR_CMR|VC_0562 [details] [associations]
symbol:VC_0562 "16S rRNA processing protein RimM"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003674
"molecular_function" evidence=ND] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0043022 GO:GO:0006396 GO:GO:0006364 InterPro:IPR011033
SUPFAM:SSF50346 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0806
KO:K02860 Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 ProtClustDB:PRK00122
OMA:RRIVVDW PIR:B82307 RefSeq:NP_230213.1 ProteinModelPortal:Q9KUF9
DNASU:2615239 GeneID:2615239 KEGG:vch:VC0562 PATRIC:20080242
Uniprot:Q9KUF9
Length = 182
Score = 135 (52.6 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 38/141 (26%), Positives = 66/141 (46%)
Query: 394 GAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIK 452
G +T + + +G + +YGI GW+ + + D+ ++IF Y+ W+ D + K
Sbjct: 3 GKETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSP--WYIDQKG-EWVEYK 59
Query: 453 ILNKKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVEN 512
+ K H + L G+ R A L + + I P+L S D FYW L V
Sbjct: 60 VEGWKRHNKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPEL-SEDEFYWRELFGMQVVT 118
Query: 513 IHGKLLGTVTEIIQNKVHSIL 533
+G LG VT++++ + +L
Sbjct: 119 TNGYDLGVVTDMMETGSNDVL 139
>TIGR_CMR|ECH_0192 [details] [associations]
symbol:ECH_0192 "ribosomal protein S16" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:DSRNSRD RefSeq:YP_507016.1
ProteinModelPortal:Q2GHR7 SMR:Q2GHR7 STRING:Q2GHR7 GeneID:3927148
KEGG:ech:ECH_0192 PATRIC:20575921
BioCyc:ECHA205920:GJNR-192-MONOMER Uniprot:Q2GHR7
Length = 87
Score = 134 (52.2 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKF-KILLNRFTYWKQVGAKTSLTVDHLITIGVV 410
DSR +RDG+FIE +GFYNP+ K+ + F K+ ++R YW VGA+ + + I G++
Sbjct: 24 DSRVARDGKFIESLGFYNPMLPKEHELFVKVKVDRLKYWLSVGAQATDRISWFIKKGII 82
>TIGR_CMR|SPO_3253 [details] [associations]
symbol:SPO_3253 "ribosomal protein S16" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:YP_168456.1
ProteinModelPortal:Q5LNF2 SMR:Q5LNF2 GeneID:3195394
KEGG:sil:SPO3253 PATRIC:23379951 OMA:GSWNPML Uniprot:Q5LNF2
Length = 121
Score = 128 (50.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 351 ATDSRNSRDGRFIERIGFYNPLASK-KEKKFKILLNRFTYWKQVGAKTSLTVDHLI-TIG 408
A DSR RDGRFIE++G YNPL K E++ K+ + R YW GA+T+ V ++ G
Sbjct: 22 AADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWLSQGAQTTDRVARMLEAAG 81
Query: 409 VV 410
VV
Sbjct: 82 VV 83
>UNIPROTKB|Q9KUG0 [details] [associations]
symbol:rpsP "30S ribosomal protein S16" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
ProtClustDB:PRK00040 OMA:DSRNSRD PIR:A82307 RefSeq:NP_230212.1
ProteinModelPortal:Q9KUG0 SMR:Q9KUG0 DNASU:2615238 GeneID:2615238
KEGG:vch:VC0561 PATRIC:20080240 Uniprot:Q9KUG0
Length = 82
Score = 124 (48.7 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
DSRNS GRFIE++GF+NP A+ +E+ ++ L+R +W GA S V L+
Sbjct: 23 DSRNSATGRFIEKVGFFNPTATGQEEGLRLDLDRVNHWVSQGASLSDRVAQLV 75
>TIGR_CMR|VC_0561 [details] [associations]
symbol:VC_0561 "ribosomal protein S16" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
ProtClustDB:PRK00040 OMA:DSRNSRD PIR:A82307 RefSeq:NP_230212.1
ProteinModelPortal:Q9KUG0 SMR:Q9KUG0 DNASU:2615238 GeneID:2615238
KEGG:vch:VC0561 PATRIC:20080240 Uniprot:Q9KUG0
Length = 82
Score = 124 (48.7 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
DSRNS GRFIE++GF+NP A+ +E+ ++ L+R +W GA S V L+
Sbjct: 23 DSRNSATGRFIEKVGFFNPTATGQEEGLRLDLDRVNHWVSQGASLSDRVAQLV 75
>UNIPROTKB|Q60BS2 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840 GO:GO:0043022
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 OMA:RRIVVDW RefSeq:YP_112924.1
ProteinModelPortal:Q60BS2 GeneID:3102757 KEGG:mca:MCA0393
PATRIC:22604533 Uniprot:Q60BS2
Length = 172
Score = 125 (49.1 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 33/137 (24%), Positives = 65/137 (47%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDK-NIFFYARKIWFFDPNSLKLFSIKILNKKNHG 460
D + +G V A+G+ GW+ F D N+ Y + W + + +L + HG
Sbjct: 8 DRSVVVGRVSGAFGVRGWVKAVSFTDPPVNLVGY--RPWTLRRGDAERRA-DVLEGREHG 64
Query: 461 NYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGT 520
N V+ L G+ R A L+G+ + + + P + +Y +L+ V N+ +LG
Sbjct: 65 NAVIVRLQGVDTREQAEALKGFEVTVRRSQLPPPAPGE-YYRVDLVGLKVVNLGETVLGE 123
Query: 521 VTEIIQNKVHSILRIIQ 537
V ++++ + +L ++Q
Sbjct: 124 VVDVMETGANDVL-VVQ 139
>TIGR_CMR|CJE_0810 [details] [associations]
symbol:CJE_0810 "ribosomal protein S16" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IMP]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 RefSeq:YP_178814.1 ProteinModelPortal:Q5HV71
STRING:Q5HV71 GeneID:3230760 KEGG:cjr:CJE0810 PATRIC:20043365
OMA:GWIELIG BioCyc:CJEJ195099:GJC0-825-MONOMER Uniprot:Q5HV71
Length = 75
Score = 119 (46.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 352 TDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTS 398
TDSR RDG +IE IG+YNP+ + + K+ R YWK VGAK S
Sbjct: 22 TDSRKRRDGGWIESIGYYNPMV--EPEVIKVDAERLAYWKSVGAKLS 66
>UNIPROTKB|Q81TR5 [details] [associations]
symbol:BAS1110 "Putative membrane protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR005496
Pfam:PF03741 GO:GO:0016021 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR HOGENOM:HOG000264098 InterPro:IPR022301
TIGRFAMs:TIGR03717 RefSeq:NP_843676.1 RefSeq:YP_017814.1
RefSeq:YP_027382.1 DNASU:1089255 EnsemblBacteria:EBBACT00000008581
EnsemblBacteria:EBBACT00000018505 EnsemblBacteria:EBBACT00000024269
GeneID:1089255 GeneID:2817135 GeneID:2849129 KEGG:ban:BA_1201
KEGG:bar:GBAA_1201 KEGG:bat:BAS1110 OMA:LYAMERF
ProtClustDB:CLSK916128 BioCyc:BANT260799:GJAJ-1186-MONOMER
BioCyc:BANT261594:GJ7F-1240-MONOMER Uniprot:Q81TR5
Length = 224
Score = 132 (51.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 32/91 (35%), Positives = 53/91 (58%)
Query: 246 GFLLFWISIKLLSNDHNYTTIASGKN-LIHAIKTIIFADLIMSIDNVLAIAGTASQISNK 304
G LL I++ LL+++ N + GK L A++TI+FADL+M DNV+AIAG A +
Sbjct: 75 GVLLTLIAVNLLTDNSNDLSSIQGKTTLFQAVRTIVFADLVMGFDNVIAIAGAAH---GR 131
Query: 305 YQMLLVXXXXXXXXXXXXXXXKLVLILIEKF 335
+ ++++ KL+L+L+E+F
Sbjct: 132 FSLVIIGLLISIPIIIWGS--KLILMLMERF 160
>TIGR_CMR|BA_1201 [details] [associations]
symbol:BA_1201 "membrane protein, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005496 Pfam:PF03741 GO:GO:0016021 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
HOGENOM:HOG000264098 InterPro:IPR022301 TIGRFAMs:TIGR03717
RefSeq:NP_843676.1 RefSeq:YP_017814.1 RefSeq:YP_027382.1
DNASU:1089255 EnsemblBacteria:EBBACT00000008581
EnsemblBacteria:EBBACT00000018505 EnsemblBacteria:EBBACT00000024269
GeneID:1089255 GeneID:2817135 GeneID:2849129 KEGG:ban:BA_1201
KEGG:bar:GBAA_1201 KEGG:bat:BAS1110 OMA:LYAMERF
ProtClustDB:CLSK916128 BioCyc:BANT260799:GJAJ-1186-MONOMER
BioCyc:BANT261594:GJ7F-1240-MONOMER Uniprot:Q81TR5
Length = 224
Score = 132 (51.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 32/91 (35%), Positives = 53/91 (58%)
Query: 246 GFLLFWISIKLLSNDHNYTTIASGKN-LIHAIKTIIFADLIMSIDNVLAIAGTASQISNK 304
G LL I++ LL+++ N + GK L A++TI+FADL+M DNV+AIAG A +
Sbjct: 75 GVLLTLIAVNLLTDNSNDLSSIQGKTTLFQAVRTIVFADLVMGFDNVIAIAGAAH---GR 131
Query: 305 YQMLLVXXXXXXXXXXXXXXXKLVLILIEKF 335
+ ++++ KL+L+L+E+F
Sbjct: 132 FSLVIIGLLISIPIIIWGS--KLILMLMERF 160
>UNIPROTKB|Q71YM3 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_00014
InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840
GO:GO:0043022 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 KO:K02860 Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 HOGENOM:HOG000220990 ProtClustDB:PRK00122
RefSeq:YP_014414.1 ProteinModelPortal:Q71YM3 STRING:Q71YM3
GeneID:2799425 KEGG:lmf:LMOf2365_1820 PATRIC:20324933 OMA:NTHGLIG
Uniprot:Q71YM3
Length = 169
Score = 119 (46.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/123 (26%), Positives = 58/123 (47%)
Query: 404 LITIGVVLRAYGIFGWILIKLFLD-DKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNY 462
+ +G ++ +G+ G I + D + F ++ F+ NS K + I + + H N+
Sbjct: 1 MYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNF 60
Query: 463 VLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVT 522
L G T + +++ LKI L ++ FY+ +I CIV G+ LG +T
Sbjct: 61 DLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENE-FYFHEIIGCIVVTTDGEELGEIT 119
Query: 523 EII 525
EI+
Sbjct: 120 EIL 122
>TAIR|locus:2164585 [details] [associations]
symbol:AT5G56940 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0009536
"plastid" evidence=IDA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 GO:GO:0005739
EMBL:CP002688 GO:GO:0009536 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AB024035 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 OMA:YNIVVAH
HSSP:P80379 EMBL:AY034927 EMBL:AY059147 IPI:IPI00524534
RefSeq:NP_200504.1 UniGene:At.7092 ProteinModelPortal:Q9LTS6
SMR:Q9LTS6 STRING:Q9LTS6 PRIDE:Q9LTS6 EnsemblPlants:AT5G56940.1
GeneID:835796 KEGG:ath:AT5G56940 TAIR:At5g56940 InParanoid:Q9LTS6
PhylomeDB:Q9LTS6 ProtClustDB:CLSN2687373 ArrayExpress:Q9LTS6
Genevestigator:Q9LTS6 Uniprot:Q9LTS6
Length = 135
Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 351 ATDSRNSRDGRFIERIGFYNPLASKKE-KKFKILLNRFTYWKQVGAKTSLTVDHLI 405
A DSR+ RDG+ +E +G++NPL + K+ + +R YW VGA+ S V L+
Sbjct: 22 AADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIKYWLSVGAQPSDPVQRLL 77
>UNIPROTKB|P66444 [details] [associations]
symbol:rpsP "30S ribosomal protein S16" species:170187
"Streptococcus pneumoniae TIGR4" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AE005672 GenomeReviews:AE005672_GR Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:FSKAGIM PIR:H95089 RefSeq:NP_345273.1
ProteinModelPortal:P66444 EnsemblBacteria:EBSTRT00000025469
GeneID:930725 KEGG:spn:SP_0775 PATRIC:19705913 Uniprot:P66444
Length = 90
Score = 108 (43.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVVLR 412
DSR+ RDGRFIE +G YNPL ++ + K +R W GA+ S TV ++++ VL+
Sbjct: 24 DSRSPRDGRFIETVGTYNPLVAENQVTLKE--DRVLAWLANGAQPSDTVRNILSKEGVLK 81
Query: 413 AY 414
+
Sbjct: 82 KF 83
>TAIR|locus:2139624 [details] [associations]
symbol:SSR16 "small subunit ribosomal protein 16"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS;TAS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009536
"plastid" evidence=IDA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IMP;RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010267 "production
of ta-siRNAs involved in RNA interference" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048481 "ovule development" evidence=RCA]
[GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006412 GO:GO:0009941 GO:GO:0009793
GO:GO:0005840 GO:GO:0003735 EMBL:AL161585 EMBL:AL023094
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 OMA:FSKAGIM EMBL:AY045607 EMBL:AY048218
EMBL:AY052220 EMBL:AF412081 EMBL:AY086956 EMBL:AY143795
IPI:IPI00529246 PIR:T05282 RefSeq:NP_195188.1 UniGene:At.22916
HSSP:P80379 ProteinModelPortal:O65686 SMR:O65686 STRING:O65686
PaxDb:O65686 PRIDE:O65686 ProMEX:O65686 EnsemblPlants:AT4G34620.1
GeneID:829614 KEGG:ath:AT4G34620 TAIR:At4g34620 InParanoid:O65686
PhylomeDB:O65686 ProtClustDB:CLSN2916103 ArrayExpress:O65686
Genevestigator:O65686 Uniprot:O65686
Length = 113
Score = 107 (42.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEK-KFKILLNRFTYWKQVGAKTSLTVDHLI 405
D ++ RDG+ IE +GFY+PL K++ + + +R YW VGA+ + TV+ ++
Sbjct: 24 DEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIKYWLSVGAQPTDTVESML 77
>TIGR_CMR|APH_0054 [details] [associations]
symbol:APH_0054 "ribosomal protein S16" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959
RefSeq:YP_504687.1 ProteinModelPortal:Q2GLR4 STRING:Q2GLR4
GeneID:3930190 KEGG:aph:APH_0054 PATRIC:20948658 eggNOG:COG0228
HOGENOM:HOG000246720 OMA:KRMGAHK ProtClustDB:PRK00040
BioCyc:APHA212042:GHPM-92-MONOMER Uniprot:Q2GLR4
Length = 96
Score = 106 (42.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKF-KILLNRFTYWKQVGAKTSLTVDHLITIGVV 410
DSR RDG+ IE+IGFYNP+ F K+ R YW VGA+ + V I G +
Sbjct: 24 DSRVQRDGKCIEQIGFYNPMVECGAPGFLKVNAERLGYWLGVGAQPTDRVSWFIKKGFI 82
>TIGR_CMR|BA_3982 [details] [associations]
symbol:BA_3982 "ribosomal protein S16" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:NP_846224.1
RefSeq:YP_020621.1 RefSeq:YP_029946.1 ProteinModelPortal:Q81WJ3
DNASU:1086780 EnsemblBacteria:EBBACT00000008723
EnsemblBacteria:EBBACT00000015777 EnsemblBacteria:EBBACT00000020497
GeneID:1086780 GeneID:2820040 GeneID:2848276 KEGG:ban:BA_3982
KEGG:bar:GBAA_3982 KEGG:bat:BAS3695 OMA:FSKAGIM
BioCyc:BANT260799:GJAJ-3753-MONOMER
BioCyc:BANT261594:GJ7F-3870-MONOMER Uniprot:Q81WJ3
Length = 90
Score = 104 (41.7 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 27/54 (50%), Positives = 31/54 (57%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLIT 406
DSR+ RDGRFIE IG YNP+A E KI W GAK S TV +L +
Sbjct: 24 DSRSPRDGRFIEEIGTYNPVAQPAE--VKINEEAALKWLGNGAKPSDTVRNLFS 75
>TIGR_CMR|CBU_0444 [details] [associations]
symbol:CBU_0444 "16S rRNA processing protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961 Pfam:PF01782
GO:GO:0005840 GO:GO:0043022 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006364 InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 ProtClustDB:PRK00122
OMA:RRIVVDW RefSeq:NP_819481.1 ProteinModelPortal:Q83E84
GeneID:1208328 KEGG:cbu:CBU_0444 PATRIC:17929579
BioCyc:CBUR227377:GJ7S-442-MONOMER Uniprot:Q83E84
Length = 168
Score = 113 (44.8 bits), Expect = 0.00012, P = 0.00012
Identities = 36/130 (27%), Positives = 56/130 (43%)
Query: 405 ITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYV 463
+ IG + R YG+ GWI + F N+ + W N+ + +K+ K H ++
Sbjct: 7 VIIGRLARPYGLRGWIKVVSFTHPIDNLLNHPT--WQIQHNN-EWQPLKLQAGKLHEPFL 63
Query: 464 LANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTE 523
+ L I D A + I L D +YW +LI V N HG LGTV
Sbjct: 64 VVKLENIDDPETAKHYTNDLIAIERGALGALKEGD-YYWTDLIGLAVVNTHGIELGTVDS 122
Query: 524 IIQNKVHSIL 533
+I+ + +L
Sbjct: 123 LIETGSNDVL 132
>UNIPROTKB|Q2GIL4 [details] [associations]
symbol:rimM "Ribosome maturation factor RimM"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00014 InterPro:IPR002676
InterPro:IPR011961 Pfam:PF01782 GO:GO:0005840 GO:GO:0043022
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006364
InterPro:IPR011033 SUPFAM:SSF50346 InterPro:IPR009000
SUPFAM:SSF50447 RefSeq:YP_505787.1 ProteinModelPortal:Q2GIL4
STRING:Q2GIL4 GeneID:3930185 KEGG:aph:APH_1268 PATRIC:20951326
eggNOG:COG0806 HOGENOM:HOG000220989 KO:K02860 OMA:DEFYHAD
ProtClustDB:PRK14592 BioCyc:APHA212042:GHPM-1271-MONOMER
Gene3D:2.40.30.60 TIGRFAMs:TIGR02273 Uniprot:Q2GIL4
Length = 171
Score = 113 (44.8 bits), Expect = 0.00014, P = 0.00014
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHG 460
D I +GV+ A+G+ G + IK F D +I Y SLK+ + ++ KN
Sbjct: 5 DTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLT--DGSESLKVSVMSVI--KN-- 58
Query: 461 NYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGT 520
V+A + GI DR A L+ L +S + PKL +D FY LI V+ + G
Sbjct: 59 GCVIAKISGIDDRCSAEALKNKKLYVSSSCLPKL-KNDEFYKDELIGLSVKLPDDTIFGI 117
Query: 521 VTEI 524
VTE+
Sbjct: 118 VTEV 121
>TIGR_CMR|APH_1268 [details] [associations]
symbol:APH_1268 "16S rRNA processing protein RimM"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003674
"molecular_function" evidence=ND] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00014 InterPro:IPR002676 InterPro:IPR011961
Pfam:PF01782 GO:GO:0005840 GO:GO:0043022 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0006364 InterPro:IPR011033
SUPFAM:SSF50346 InterPro:IPR009000 SUPFAM:SSF50447
RefSeq:YP_505787.1 ProteinModelPortal:Q2GIL4 STRING:Q2GIL4
GeneID:3930185 KEGG:aph:APH_1268 PATRIC:20951326 eggNOG:COG0806
HOGENOM:HOG000220989 KO:K02860 OMA:DEFYHAD ProtClustDB:PRK14592
BioCyc:APHA212042:GHPM-1271-MONOMER Gene3D:2.40.30.60
TIGRFAMs:TIGR02273 Uniprot:Q2GIL4
Length = 171
Score = 113 (44.8 bits), Expect = 0.00014, P = 0.00014
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDD-KNIFFYARKIWFFDPNSLKLFSIKILNKKNHG 460
D I +GV+ A+G+ G + IK F D +I Y SLK+ + ++ KN
Sbjct: 5 DTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLT--DGSESLKVSVMSVI--KN-- 58
Query: 461 NYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGT 520
V+A + GI DR A L+ L +S + PKL +D FY LI V+ + G
Sbjct: 59 GCVIAKISGIDDRCSAEALKNKKLYVSSSCLPKL-KNDEFYKDELIGLSVKLPDDTIFGI 117
Query: 521 VTEI 524
VTE+
Sbjct: 118 VTEV 121
>UNIPROTKB|Q81P70 [details] [associations]
symbol:BAS2736 "Membrane protein, putative" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR005496
Pfam:PF03741 GO:GO:0016021 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR RefSeq:NP_845282.1 RefSeq:YP_019587.1
RefSeq:YP_028994.1 IntAct:Q81P70 DNASU:1088538
EnsemblBacteria:EBBACT00000011397 EnsemblBacteria:EBBACT00000016941
EnsemblBacteria:EBBACT00000019306 GeneID:1088538 GeneID:2817259
GeneID:2852777 KEGG:ban:BA_2946 KEGG:bar:GBAA_2946 KEGG:bat:BAS2736
HOGENOM:HOG000264098 OMA:MVWGSTL ProtClustDB:CLSK644181
BioCyc:BANT260799:GJAJ-2799-MONOMER
BioCyc:BANT261594:GJ7F-2908-MONOMER InterPro:IPR022301
TIGRFAMs:TIGR03717 Uniprot:Q81P70
Length = 223
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 246 GFLLFWISIKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTA 298
G LL WI+ KL++ ++ I + + AIKTII AD +M IDNVLA+AG A
Sbjct: 78 GVLLIWIAYKLIAEGKDHD-IKAEEGFWSAIKTIIIADALMGIDNVLAVAGAA 129
>TIGR_CMR|BA_2946 [details] [associations]
symbol:BA_2946 "membrane protein, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005496 Pfam:PF03741 GO:GO:0016021 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
RefSeq:NP_845282.1 RefSeq:YP_019587.1 RefSeq:YP_028994.1
IntAct:Q81P70 DNASU:1088538 EnsemblBacteria:EBBACT00000011397
EnsemblBacteria:EBBACT00000016941 EnsemblBacteria:EBBACT00000019306
GeneID:1088538 GeneID:2817259 GeneID:2852777 KEGG:ban:BA_2946
KEGG:bar:GBAA_2946 KEGG:bat:BAS2736 HOGENOM:HOG000264098
OMA:MVWGSTL ProtClustDB:CLSK644181
BioCyc:BANT260799:GJAJ-2799-MONOMER
BioCyc:BANT261594:GJ7F-2908-MONOMER InterPro:IPR022301
TIGRFAMs:TIGR03717 Uniprot:Q81P70
Length = 223
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 246 GFLLFWISIKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTA 298
G LL WI+ KL++ ++ I + + AIKTII AD +M IDNVLA+AG A
Sbjct: 78 GVLLIWIAYKLIAEGKDHD-IKAEEGFWSAIKTIIIADALMGIDNVLAVAGAA 129
>TIGR_CMR|NSE_0123 [details] [associations]
symbol:NSE_0123 "ribosomal protein S16" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
OMA:DSRNSRD RefSeq:YP_506023.1 ProteinModelPortal:Q2GES3
STRING:Q2GES3 GeneID:3932034 KEGG:nse:NSE_0123 PATRIC:22680351
ProtClustDB:CLSK2528008 BioCyc:NSEN222891:GHFU-159-MONOMER
Uniprot:Q2GES3
Length = 85
Score = 100 (40.3 bits), Expect = 0.00021, P = 0.00021
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 353 DSRNSRDGRFIERIGFYNPLASKKEKKFKIL-LNRFTYWKQVGAK 396
+S + RDG+F+E++G Y+PL SK + L + R YW VGAK
Sbjct: 29 NSSSPRDGKFLEQVGSYDPLLSKDDPLRVCLDIERIRYWTSVGAK 73
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.140 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 578 505 0.00086 119 3 11 22 0.49 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 617 (66 KB)
Total size of DFA: 282 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 39.77u 0.11s 39.88t Elapsed: 00:00:05
Total cpu time: 39.77u 0.11s 39.88t Elapsed: 00:00:06
Start: Thu Aug 15 11:19:40 2013 End: Thu Aug 15 11:19:46 2013