RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3773
(578 letters)
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT
structural genomics, JCSG, protein structure initiative,
PS unknown function; HET: UNL; 2.46A {Pseudomonas
aeruginosa} SCOP: b.41.1.4 b.43.3.4
Length = 187
Score = 140 bits (356), Expect = 4e-39
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 10/177 (5%)
Query: 402 DHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGN 461
D L+ IG ++ YGI G + + F D + R+ ++ +++ + HG
Sbjct: 18 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDG--EIRQAELVRGRLHGK 75
Query: 462 YVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTV 521
+ A L G+ DR A GY + I ++ P L +YW L V + +LLG +
Sbjct: 76 VLAAKLKGLDDREEARTFTGYEICIPRSELPSL-EEGEYYWHQLEGLKVIDQGRQLLGVI 134
Query: 522 TEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
+++ + ++ + K ++ L+P+ + ++D+ ++ VDWD
Sbjct: 135 DHLLETGANDVMVV-----KPCAGSLDDRE--RLLPYTGQCVLSIDLAAGEMRVDWD 184
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.70A {Haemophilus
influenzae}
Length = 177
Score = 137 bits (347), Expect = 6e-38
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 403 HLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNY 462
H+ +G + YGI GW+ I + F + + + SI++ N + H +
Sbjct: 1 HIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQ--SIELENWRYHNHE 58
Query: 463 VLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVT 522
++ L G+ DR A L + + ++ FP+L +YW +LI C V N+ G +GTVT
Sbjct: 59 IIVKLKGVDDREAAQILANVEIGVDLSVFPEL-EEGDYYWHDLIGCTVVNLEGYTMGTVT 117
Query: 523 EIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIK-IFIKNVDIIKKKIIVDWD 578
E+++ + +L + ++ ++ LIPF+ +K VD+ K I VDWD
Sbjct: 118 EMMETGSNDVLVVKANTKDAFGKQE------RLIPFLYEQVVKRVDLTTKTIEVDWD 168
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural
genomics, PSI-2, protein structure initiative; 2.40A
{Acinetobacter calcoaceticus}
Length = 182
Score = 135 bits (342), Expect = 2e-37
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Query: 396 KTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILN 455
T + I IG + AYG+ GW+ + + + F + + ++ +
Sbjct: 3 PTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQ--TVDVKR 60
Query: 456 KKNHGNYVLANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENI-- 513
K HG ++ +L G++DR A L + I+ + PK D +YW +L V +
Sbjct: 61 WKPHGKGLVVSLKGVSDRTGAESLVASNIWIAKSQLPKA-DVDEYYWSDLKGLTVLGLDD 119
Query: 514 --HGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKK 571
LG + E+ + + ++ + + I +IP+ K ++ VD+
Sbjct: 120 EEQEVNLGQIHELFETGANDVMVVRATPDSI-------DSEERMIPWHKDVVQRVDLEAG 172
Query: 572 KIIVDWD 578
+I V+W
Sbjct: 173 RIYVNWG 179
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19,
PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus
thermophilus} PDB: 3a1p_A 2dog_A
Length = 162
Score = 116 bits (294), Expect = 8e-31
Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 20/175 (11%)
Query: 404 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYV 463
L+ IG Y + G + + + + + +++ + + G +
Sbjct: 3 LVEIGRFGAPYALKGGLRFR----GEPVVLHLERVYVEGHGWRAIEDLYR-----VGEEL 53
Query: 464 LANLYGITDRNLATKLQGYYLKISINDFPKLLSSDTFYWFNLIDCIVENIHGKLLGTVTE 523
+ +L G+TDR LA L G + + D P L +Y+F LI V G+ +G V +
Sbjct: 54 VVHLAGVTDRTLAEALVGLRVYAEVADLPP-LEEGRYYYFALIGLPVYV-EGRQVGEVVD 111
Query: 524 IIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
I+ +L I ++ + L+P V + + I VD
Sbjct: 112 ILDAGAQDVLIIRGVGERLRDRAE------RLVPLQA---PYVRVEEGSIHVDPI 157
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P
2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P*
2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P*
2qp0_P* 2vho_P ...
Length = 82
Score = 87.6 bits (218), Expect = 2e-21
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 351 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
DSRN+R+GRFIER+GF+NP+AS+KE+ ++ L+R +W GA S V LI
Sbjct: 21 VADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALI 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 80.7 bits (198), Expect = 6e-16
Identities = 97/620 (15%), Positives = 183/620 (29%), Gaps = 185/620 (29%)
Query: 66 YTNPNNILRASIVSDPHFIR----KNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
Y +IL V + F+ K+ QD ++++ E +I + + T
Sbjct: 16 YQY-KDILS---VFEDAFVDNFDCKDVQDMPKSILSKE-------EIDHIIMSKDAVSGT 64
Query: 122 KF---AMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINM 178
+L+ + +V ++ V + + I + M + ++ + N
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--ND 122
Query: 179 NSIIKNGP---KNKIEELRLELFNKINSLGIGAQGMGG-------LSTVLDVKIMMYPTH 228
N + +LR L + + G+ G L L K+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ----- 177
Query: 229 AASKPVAIIPNCAATRHGFLLFWISIKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSI 288
+ F +FW+++K ++ T + + L++ I +
Sbjct: 178 --------------CKMDFKIFWLNLKNCNSPE--TVLEMLQKLLYQID----PNWTSRS 217
Query: 289 DNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSKL----VLIL--------IEKFS 336
D+ I I + + LL SK +L+L F+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLK--------------SKPYENCLLVLLNVQNAKAWNAFN 263
Query: 337 SIIILCSILL--GYLSATDSRNSRDGRFI----ERIGFY--------------------- 369
+ C ILL + TD ++ I +
Sbjct: 264 ---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 370 -----NPLA-SKKEKKFKILLNRFTYWKQVGAKT-----SLTVDHLITIGVVLRAYGIFG 418
NP S + + L + WK V +++ L R F
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKM--FD 376
Query: 419 WILIKLFLDDKNIFFYARK----IW----FFDPNSL--KLFSIKILNKKNHGNYVLANLY 468
+ + F +I IW D + KL ++ K+ + + ++
Sbjct: 377 RLSV--FPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIP 429
Query: 469 GITDRNLATKLQGYYLKISIND---FPKLLSSDTF-------YWFNLIDCIVENI-HGKL 517
I Y L SI D PK SD Y+++ I ++NI H +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 518 LGTVTEI------IQNKVHSILRIIQSSTKIICT----------KKYKK-------KYGI 554
+ + ++ K I ST + K YK KY
Sbjct: 490 MTLFRMVFLDFRFLEQK------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 555 LIPFIKIFIKNV--DIIKKK 572
L+ I F+ + ++I K
Sbjct: 544 LVNAILDFLPKIEENLICSK 563
Score = 57.2 bits (137), Expect = 1e-08
Identities = 58/401 (14%), Positives = 118/401 (29%), Gaps = 137/401 (34%)
Query: 247 FLLFWISIKLLSN-------------DHNYTTIASG---KNLIHAIKTIIFADLIMSIDN 290
LFW LLS NY + S + ++ T ++ + + N
Sbjct: 65 LRLFWT---LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 291 VLAIAGTASQISNKY-----QMLLVIIGILFSI-P---IIIFG----SKLVLILIEKFSS 337
+Q+ KY Q L + L + P ++I G K + L + S
Sbjct: 122 D-------NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCLS 173
Query: 338 IIILCS-------ILLGYLSATDSR--------NSRDGRFIERIGFYNPLASKKEKKFKI 382
+ C + L ++ ++ D + R + + + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQA 232
Query: 383 LLNRFTYWKQVGAKTSLTVDHLITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFD 442
L R K + L L+ L + + +
Sbjct: 233 ELRRLLKSKPY--ENCL---------------------LV---LLN---------VQ--N 255
Query: 443 PNSLKLFSI--KILNKKNHGNYVLANLYGIT--DRNLATKLQGYYLK-ISINDFPKLLSS 497
+ F++ KIL +T + + L IS++ L+
Sbjct: 256 AKAWNAFNLSCKIL---------------LTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 498 D-TFYWF-NLIDCIVE-------NIHGKLLGTVTEIIQNKVH-----------SILRIIQ 537
D +DC + + + L + E I++ + + II+
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 538 SSTKIICTKKYKKKYGILIPFIKIFIKNVDIIKKKIIVDWD 578
SS ++ +Y+K + L +F + I + + W
Sbjct: 361 SSLNVLEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWF 397
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A
{Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P
1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P
3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P
1i94_P* ...
Length = 83
Score = 68.7 bits (169), Expect = 9e-15
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 351 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
TD+R RDG++IE+IG+Y+P + K+ + R YW VGA+ + T L+
Sbjct: 21 VTDARRKRDGKYIEKIGYYDPRKT-TPDWLKVDVERARYWLSVGAQPTDTARRLL 74
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 65.0 bits (159), Expect = 4e-13
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 351 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
D+++ R+G++I+ +G Y+P K++ + + W G + S ++
Sbjct: 22 VMDAKSPREGKYIDILGTYDP---KRKVLINVYPEKVKEWVLKGVELSHRAKAIL 73
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 88
Score = 62.6 bits (153), Expect = 2e-12
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 351 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITIGVV 410
A D R+ R+GR ++++GFY+P+ + + + + + + GA+ + TV +
Sbjct: 21 AIDVRSRREGRDLQKVGFYDPI----KSQTYLNVPAILDFLEKGAQPTETVYDI------ 70
Query: 411 LRAYGIF 417
L+ +F
Sbjct: 71 LKRAEVF 77
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 38.7 bits (90), Expect = 0.006
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 29/114 (25%)
Query: 196 ELFNKINSLGIG---AQGMGGLSTVLDVKIMMYPTHAASKPV-------AIIPNCAATRH 245
E++ ++ +G GMGG+S + M+ +PV + I +A
Sbjct: 1034 EMYKYVHVSEVGNCSGSGMGGVSALRG----MFKDRFKDEPVQNDILQESFINTMSA--- 1086
Query: 246 GFLLFWISIKLLSNDHNYTTI---ASGKNLIHAIKTIIFADLIMSIDNVLAIAG 296
+ + + S+ T + A+ + ++ I + I+S + I G
Sbjct: 1087 ----WVNMLLISSSGPIKTPVGACATS---VESV--DIGVETILSGKARICIVG 1131
Score = 28.3 bits (63), Expect = 8.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 130 DSLVDWIMKTVPTMGAGWCP 149
++L+++I T G GW
Sbjct: 547 EALIEFIYDTEKNGGLGWDL 566
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 3.6
Identities = 42/269 (15%), Positives = 74/269 (27%), Gaps = 122/269 (45%)
Query: 316 FSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSATDSRNSRD---------GRFIERI 366
+P F L E+F+ I+ T+ + D G+F+
Sbjct: 20 LLVPTASFFIASQLQ--EQFNKILP---------EPTEGFAADDEPTTPAELVGKFL--- 65
Query: 367 GFYNPLASKKEKK--------FKILLNRF--TYWKQ-----VGAKTSLTVDH---LITIG 408
G+ ++S E + L F Y + + A L ++ L+
Sbjct: 66 GY---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA--KLLQENDTTLVKTK 120
Query: 409 VVLRAY-------------------------------GIFG-------WI--LIKLF--- 425
+++ Y IFG + L L+
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 426 ----------------------LDDKNIFFYARKI--WFFDPNS------LK--LFSIKI 453
LD + +F I W +P++ L S +
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 454 LNKKNHGNY-VLANLYGITDRNLATKLQG 481
+ +Y V A L G T L + L+G
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A
{Tetrahymena thermophila} PDB: 4epq_A*
Length = 477
Score = 29.1 bits (64), Expect = 4.2
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 306 QMLLVIIGILFSIPIIIFGSKLVLILIEKFSSIIILCSILLGYLSATDSRNSRDGRFIER 365
Q++L I I + S + C L L D + +D R I
Sbjct: 116 QLVLKIKKKQLKNQIPKESKIYEAAFSREEISYYVSCM-FLCILKDQDRKIYKDFRLIYL 174
Query: 366 IGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLITI 407
+ ++++K K Y KQ + ++
Sbjct: 175 KDLVQQINIRRQEKIKCFYE---YLKQALDFSEKESKEVVIF 213
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein,
zebrafish, cholic acid, LIP binding, transport, lipid
binding protein; 1.60A {Danio rerio} PDB: 3elz_A*
3em0_A*
Length = 138
Score = 27.9 bits (62), Expect = 5.1
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 513 IHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIP 557
I TEI K+ + + + KK +L+P
Sbjct: 96 ISFPKYQQTTEISGGKLVETSTASGAQGTAVLVRTSKK---VLVP 137
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, prors, cysrs, RS, translation, ATP-binding,
nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia
atcc 50803}
Length = 518
Score = 29.0 bits (65), Expect = 5.8
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 447 KLFSIKILNKKNHGNYVLANLYGITDRNLA 476
F I NK N + GI+ R LA
Sbjct: 250 STFDILYANKANESVHPYLTCAGISTRVLA 279
>1rwh_A Chondroitin AC lyase; chondroitinase, chondroitin lyase; HET: ASG
GCT GAD; 1.25A {Arthrobacter aurescens} SCOP: a.102.3.2
b.24.1.1 b.30.5.2 PDB: 1rwc_A* 1rwf_A* 1rwg_A* 1rwa_A*
1rw9_A
Length = 757
Score = 29.0 bits (64), Expect = 6.1
Identities = 8/51 (15%), Positives = 10/51 (19%), Gaps = 4/51 (7%)
Query: 408 GVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKN 458
L G + ARK WF + I
Sbjct: 477 ATALGEVAAVGQH----LVGPGRTGLTARKSWFVSGDVTVCLGADISTASG 523
>2o3i_A Hypothetical protein; NESG, CVR68, Q7NTB2, structural genomics,
PSI-2, protein structure initiative; 2.30A
{Chromobacterium violaceum} SCOP: e.73.1.1
Length = 405
Score = 28.6 bits (63), Expect = 6.7
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 152 ILGIGIGGTPEKAMLMAKKVLMQDINMNSIIK 183
G G GGT A +A D ++
Sbjct: 19 FFGSGGGGTMISARHLAANFRKGDYYPTDKVR 50
>2wco_A Putative secreted lyase; family 8, glycosaminoglycans (GAGS)
hydrolysis; HET: GC4 NAG; 1.94A {Streptomyces coelicolor
A3} PDB: 2wda_A* 2x03_A
Length = 765
Score = 28.6 bits (63), Expect = 7.0
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 408 GVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKN 458
G Y G L ARK WFF +++ I
Sbjct: 501 GATDGEYAAVGQHL-----KGLGSTLEARKSWFFLDDAVVCLGAGITCADG 546
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 8.0
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 423 KLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKK 457
+D+ N F+D S KL+ ++ K+
Sbjct: 195 NDGVDELNKKC-----TFWDAIS-KLYYVQFFFKQ 223
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics,
joint center for STR genomics, JCSG, protein structure
initiative; HET: MSE; 2.25A {Shewanella loihica pv-4}
SCOP: c.13.2.2
Length = 126
Score = 26.8 bits (59), Expect = 9.5
Identities = 5/46 (10%), Positives = 14/46 (30%)
Query: 40 KIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIR 85
+I + +G + ++ G + R +I+
Sbjct: 53 EIVALIDITELDGLSLHAAWDDLKLGLKHGKEFKRVAIIGQGELQE 98
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A
{Methanocaldococcus jannaschii}
Length = 268
Score = 27.7 bits (61), Expect = 9.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 154 GIGIGGTPEKAMLMAKKVL 172
GIGIG T E A +A L
Sbjct: 215 GIGIGRTAEDASNLADIGL 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.419
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,999,609
Number of extensions: 568666
Number of successful extensions: 942
Number of sequences better than 10.0: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 30
Length of query: 578
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 479
Effective length of database: 3,937,614
Effective search space: 1886117106
Effective search space used: 1886117106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.6 bits)