RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3773
(578 letters)
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 71.6 bits (176), Expect = 2e-16
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 500 FYWFNLIDCIVENIHGKLLGTVTEIIQNKVHSILRIIQSSTKIICTKKYKKKYGILIPFI 559
+YW L V + +LLG + +++ + ++ + L+P+
Sbjct: 1 YYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVK-------PCAGSLDDRERLLPYT 53
Query: 560 KIFIKNVDIIKKKIIVDWD 578
+ ++D+ ++ VDWD
Sbjct: 54 GQCVLSIDLAAGEMRVDWD 72
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 67.8 bits (166), Expect = 5e-15
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 351 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
DSRN+R+GRFIER+GF+NP+AS+KE+ ++ L+R +W GA S V LI
Sbjct: 21 VADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALI 75
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus
thermophilus [TaxId: 274]}
Length = 83
Score = 61.2 bits (149), Expect = 1e-12
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 351 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
TD+R RDG++IE+IG+Y+P K+ + R YW VGA+ + T L+
Sbjct: 21 VTDARRKRDGKYIEKIGYYDPR-KTTPDWLKVDVERARYWLSVGAQPTDTARRLL 74
>d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM,
N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 89
Score = 60.3 bits (146), Expect = 3e-12
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 404 LITIGVVLRAYGIFGWILIKLFLDDKNIFFYARKIWFFDPNSLKLFSIKILNKKNHGNYV 463
L+ IG ++ YGI G + + F D + R+ ++ +++ + HG +
Sbjct: 2 LVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIR--QAELVRGRLHGKVL 59
Query: 464 LANLYGITDRNLATKLQGYYLKISINDFP 492
A L G+ DR A GY + I ++ P
Sbjct: 60 AAKLKGLDDREEARTFTGYEICIPRSELP 88
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 59.8 bits (145), Expect = 7e-12
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 351 ATDSRNSRDGRFIERIGFYNPLASKKEKKFKILLNRFTYWKQVGAKTSLTVDHLI 405
D+++ R+G++I+ +G Y+P K++ + + W G + S ++
Sbjct: 21 VMDAKSPREGKYIDILGTYDP---KRKVLINVYPEKVKEWVLKGVELSHRAKAIL 72
>d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 87
Score = 26.6 bits (59), Expect = 2.3
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 527 NKVHSILRIIQSSTKIICTKKYK-------KKYGILIPFIKIFIKNVDIIKK 571
VHSILR +I + YK +K+G K+ I + + +
Sbjct: 17 KTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIIDETVWEG 68
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 28.0 bits (62), Expect = 2.6
Identities = 29/238 (12%), Positives = 62/238 (26%), Gaps = 47/238 (19%)
Query: 87 NTQDNTPAVINMELVPG------NFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTV 140
+ +I ++ V N ++ K+ KG V W+ +
Sbjct: 16 DRYIAVDKMI-LKGVDVLPHALINNVEEKLGFKGEKLREY------------VRWLSDRI 62
Query: 141 PTMG--AGWCPP------GILGIGIGGTPEKAMLM----AKKVLMQDINMNSIIKNGPKN 188
++ + P G +G+ P + K+ + + + G K
Sbjct: 63 LSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKP 122
Query: 189 KIEELRLELFNKINSLGIGAQGMGGLS--TVLDVKIMMYPTHAASKPVAIIPNCAATRHG 246
+ + ++ LG G + + T D+ + G
Sbjct: 123 DQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIV------DFTDAGSCHMVQIKTPDLG 176
Query: 247 FLLFWISIKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSIDNVLAIAGTASQISNK 304
+ + L N H G I +A+A ++ K
Sbjct: 177 GIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVH--------VALAARPMRMLIK 226
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 136
Score = 27.5 bits (61), Expect = 2.8
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 347 GYLSATDSRNSRDGRFIERI--GFYNPLASKKEKKFKILLNR 386
G + + D F E I YN S+K + + L+
Sbjct: 67 GKMQGLLQYSEEDCAFEEEIRPDGYNVYRSEKHRLP-VSLSS 107
>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 253
Score = 27.3 bits (60), Expect = 4.4
Identities = 6/76 (7%), Positives = 15/76 (19%), Gaps = 8/76 (10%)
Query: 229 AASKPVAIIPNCAATRHGFLLFWISIKLLSNDHNYTTIASGKNLIHAIKTIIFADLIMSI 288
+ G + + + G + +
Sbjct: 159 FTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTN----- 213
Query: 289 DNVLAIAGTASQISNK 304
+ +A A Q+ K
Sbjct: 214 ---IGMACGARQVLAK 226
>d1hn0a4 b.30.5.2 (A:619-899) Chondroitin ABC lyase I {Proteus
vulgaris [TaxId: 585]}
Length = 281
Score = 27.2 bits (60), Expect = 5.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 414 YGIFGWILIKLFLDDK-NIFFYARKIWFFDPNSL 446
YG+ + LI ++ + F A+K N L
Sbjct: 114 YGMMAFNLIYPANLERFDPNFTAKKSVLAADNHL 147
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 26.3 bits (57), Expect = 9.9
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 278 TIIFADLIMSIDNVLAIAGTASQISNKYQMLLVIIGILFSIPIIIFGSK--LVLILIEKF 335
T+ ++ D++L IA A Q++ ++ + G L + S IL E
Sbjct: 155 TVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPH 214
Query: 336 SSIIILCSILLGYLSATDSRNSRDGRFIERIGF 368
+S+ L+ + + + I F
Sbjct: 215 ASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 247
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.419
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,229,850
Number of extensions: 110013
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 21
Length of query: 578
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 488
Effective length of database: 1,171,896
Effective search space: 571885248
Effective search space used: 571885248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)