BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3774
(963 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8E|B Chain B, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8F|A Chain A, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|B Chain B, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|C Chain C, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|D Chain D, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|E Chain E, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|F Chain F, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|F Chain F, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|A Chain A, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|B Chain B, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|C Chain C, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|D Chain D, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|E Chain E, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
Length = 497
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/501 (44%), Positives = 309/501 (61%), Gaps = 17/501 (3%)
Query: 462 IKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDID--KYGEITNILKSGDLNEKLGSTL 519
++L+ + + S+KT LV+ + + KL ++ K +D G I+ +LK GDL K G TL
Sbjct: 1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTL 60
Query: 520 LLRNIQKINAKRILLVNLGDXXXXXXXXXXXXXXQSIMNVFCNIGASNLLLMLP----FN 575
LL+N+Q + A+R+LLV G S+ V + ++ +L L N
Sbjct: 61 LLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVA-SVAGVLKGLNGADAVLALDDVAVNN 119
Query: 576 KIEKYNLSCLXXXXXXXXSDNLYRSDAQXXXXXXXXXXXXXXXFALDEKNYIDGKNAIIY 635
+ Y L D Y D A D+ + + A+ +
Sbjct: 120 RDAHYGKYRLLAETLL---DGEYVFDRFKSQKVEPRALKKVTLLA-DKAGQAEVERAVKH 175
Query: 636 GCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYK-MDIEIINREQMQRLKMGSLL 694
AI+ G+ T++LGNL N+C P++L +K+L +K + +E+++ ++++ L MG+
Sbjct: 176 ASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFY 235
Query: 695 SVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAA 754
+V GS +PP+LI++ Y GK + P VLVGKG+TFDTGGIS+KP MDEMKYDMCGAA
Sbjct: 236 AVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAA 295
Query: 755 SILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI 814
S+ GTL A+ E+ L +N++ ++ +ENM SG +T+PGDIV +MSG+T+E+L+TDAEGRL+
Sbjct: 296 SVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLV 355
Query: 815 LCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 874
LCD LTY ERFKP VIDIATLTGAC+VALG H +GL ND+ LV LL AGK +
Sbjct: 356 LCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDD----LVGQLLDAGKRAD 411
Query: 875 DTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWK 934
D AW +P+ D YQ+QL S FAD+ NIG A +ITA CFL F K Y WAH+DIAG AW
Sbjct: 412 DRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWI 471
Query: 935 SGDK-KGATGRPVTLLTYYLM 954
SG K KGATGRPV LLT YL+
Sbjct: 472 SGGKDKGATGRPVPLLTQYLL 492
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/323 (53%), Positives = 232/323 (71%), Gaps = 6/323 (1%)
Query: 125 DEKNYIDGKNAIIYGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYK-MDIEII 183
D+ + + A+ + AI+ G+ T++LGNL N+C P++L +K+L +K + +E++
Sbjct: 162 DKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVL 221
Query: 184 NREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPS 243
+ ++++ L MG+ +V GS +PP+LI++ Y GK + P VLVGKG+TFDTGGIS+KP
Sbjct: 222 DEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPG 281
Query: 244 YSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGK 303
MDEMKYDMCGAAS+ GTL A+ E+ L +N++ ++ +ENM SG +T+PGDIV +MSG+
Sbjct: 282 AGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQ 341
Query: 304 TIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHT 363
T+E+L+TDAEGRL+LCD LTY ERFKP VIDIATLTGAC+VALG H +GL ND+
Sbjct: 342 TVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDD--- 398
Query: 364 KLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKK 423
LV LL AGK + D AW +P+ D YQ+QL S FAD+ NIG A +ITA CFL F K
Sbjct: 399 -LVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKA 457
Query: 424 YVWAHLDIAGVAWKSGDK-KGAT 445
Y WAH+DIAG AW SG K KGAT
Sbjct: 458 YNWAHMDIAGTAWISGGKDKGAT 480
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAK 59
S+KT LV+ + + KL ++ K +D G I+ +LK GDL K G TLLL+N+Q + A+
Sbjct: 12 SVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAE 71
Query: 60 RI 61
R+
Sbjct: 72 RV 73
>pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|B Chain B, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|C Chain C, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|D Chain D, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|E Chain E, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|F Chain F, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|G Chain G, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|H Chain H, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|I Chain I, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|J Chain J, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|K Chain K, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|L Chain L, E. Coli Aminopeptidase A (Pepa)
Length = 503
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/506 (42%), Positives = 310/506 (61%), Gaps = 15/506 (2%)
Query: 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDKY--GEITNILKSGDLNEKL 515
M+F +K + S ++ C+VVG+F+ +LS I + +DK G I+ +L+ G+L K
Sbjct: 1 MEFSVK----SGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKP 56
Query: 516 GSTLLLRNIQKINAKRILLVNLGDXXXXXXXXXXXXXXQSIMNVFCNIGASNLLLMLPFN 575
G TLLL ++ + ++RILL+ G ++I N + G+ + L
Sbjct: 57 GQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTI-NTLNDTGSMEAVCFLTEL 115
Query: 576 KIEKYNLSCLXXXXXXXXSDNLYRSDAQXXXXXXXXXXXXXXXFALDEKNYI-DGKNAII 634
++ N + LY D F + + + G+ AI
Sbjct: 116 HVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQ 175
Query: 635 YGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDI--EIINREQMQRLKMGS 692
+G AI+ GI+ K+LGN+ NIC YL + +++L+ Y ++ +I +QM+ L M S
Sbjct: 176 HGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHS 235
Query: 693 LLSVTHGSSEPPKLIIIKYMNGKFKEA-PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMC 751
L+V GS + +I+Y ++A PIVLVGKG+TFD+GGISIKPS MDEMKYDMC
Sbjct: 236 YLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMC 295
Query: 752 GAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEG 811
GAA++ G + ++E+ L +N+IGV+ ENM G + +PGD++ +MSG+T+EVL+TDAEG
Sbjct: 296 GAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEG 355
Query: 812 RLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGK 871
RL+LCD LTYVERF+P VID+ATLTGACV+ALGHH +GL + H L +L+ A +
Sbjct: 356 RLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMA----NHNPLAHELIAASE 411
Query: 872 MSGDTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGV 931
SGD AW +P+ D YQ+QL+SNFAD++NIG +ITA CFL FT+KY WAHLDIAG
Sbjct: 412 QSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGT 471
Query: 932 AWKSGDKKGATGRPVTLLTYYLMLKS 957
AW+SG KGATGRPV LL +L+ ++
Sbjct: 472 AWRSGKAKGATGRPVALLAQFLLNRA 497
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/473 (41%), Positives = 283/473 (59%), Gaps = 35/473 (7%)
Query: 4 KTDCLVVGIFKKNKLSSIVKDIDKY--GEITNILKSGDLNEKLGSTLLLRNIQKINAKRI 61
++ C+VVG+F+ +LS I + +DK G I+ +L+ G+L K G TLLL ++ + ++RI
Sbjct: 14 RSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERI 73
Query: 62 XXXXXXXXXXXXXXPFNKIEKYNLSCL-------------------------XXXXXXXX 96
+ ++ + ++ L
Sbjct: 74 LLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETA 133
Query: 97 SDNLYRSDAQXXXXXXXXXXXXXXXFALDEKNYI-DGKNAIIYGCAISKGIELTKNLGNL 155
+ LY D F + + + G+ AI +G AI+ GI+ K+LGN+
Sbjct: 134 KETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNM 193
Query: 156 SANICTPTYLENISKKLSFDYKMDI--EIINREQMQRLKMGSLLSVTHGSSEPPKLIIIK 213
NIC YL + +++L+ Y ++ +I +QM+ L M S L+V GS + +I+
Sbjct: 194 PPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIE 253
Query: 214 YMNGKFKEA-PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLE 272
Y ++A PIVLVGKG+TFD+GGISIKPS MDEMKYDMCGAA++ G + ++E+ L
Sbjct: 254 YKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLP 313
Query: 273 LNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSV 332
+N+IGV+ ENM G + +PGD++ +MSG+T+EVL+TDAEGRL+LCD LTYVERF+P
Sbjct: 314 INVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEA 373
Query: 333 VIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQ 392
VID+ATLTGACV+ALGHH +GL + H L +L+ A + SGD AW +P+ D YQ+Q
Sbjct: 374 VIDVATLTGACVIALGHHITGLMA----NHNPLAHELIAASEQSGDRAWRLPLGDEYQEQ 429
Query: 393 LKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKSGDKKGAT 445
L+SNFAD++NIG +ITA CFL FT+KY WAHLDIAG AW+SG KGAT
Sbjct: 430 LESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGAT 482
>pdb|3JRU|B Chain B, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
pdb|3JRU|A Chain A, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 490
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/489 (41%), Positives = 277/489 (56%), Gaps = 17/489 (3%)
Query: 473 SLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKLGSTLLLRNIQKINAK 530
S DC+VVG F LS + +D G +T +L GD+ K GST LL ++ + A
Sbjct: 14 SAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAP 73
Query: 531 RILLVNLGDXXXXXXXXXXXXXXQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLXXXXX 590
R+L+V LGD + + GA L+ K +
Sbjct: 74 RVLVVGLGDAGKFGVAPYLKAIGDATRAL--KTGAVGTALLTLTELTVKARDAAWNIRQA 131
Query: 591 XXXSDNL-YRSDAQXXXXXXXXXXXXXXXFALDEKNYIDGKNAIIYGCAISKGIELTKNL 649
SD+ YR A A D+ A+ G A ++G+E + L
Sbjct: 132 VTVSDHAAYRYTATLGKKKVDETGLTTLAIAGDDAR------ALAVGVATAEGVEFAREL 185
Query: 650 GNLSANICTPTYLENISKKLSFDYK-MDIEIINREQMQRLKMGSLLSVTHGSSEPPKLII 708
GNL N CTP YL + + + + + EI++ QM+ L MGSLLSV GS+ P+LI+
Sbjct: 186 GNLPPNYCTPAYLADTAAAFAGKFPGAEAEILDEAQMEALGMGSLLSVARGSANRPRLIV 245
Query: 709 IKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL 768
+K+ NG P VLVGKG+TFDTGG+++K ++EMKYDMCG A+++GT A + L
Sbjct: 246 LKW-NGGGDARPYVLVGKGITFDTGGVNLKTQGGIEEMKYDMCGGATVIGTFVATVKAEL 304
Query: 769 ELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPS 828
+N++ V+ A EN + GN+ +P D++ SMSGKTIEV +TDAEGRLILCDALTY ERF P
Sbjct: 305 PINLVVVVPAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLILCDALTYAERFNPE 364
Query: 829 VVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQK 888
++D+ATLTGAC+VALGH +GL S KH L +LL AG+ D AW +P+ D YQ
Sbjct: 365 ALVDVATLTGACMVALGHQTAGLMS----KHDDLANELLAAGEHVFDRAWRLPLWDEYQG 420
Query: 889 QLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKSGDKKGATGRPVTL 948
L S FAD+ NIG +ITA CFL FT+ WAHLDIAGVA G + ATGRPV L
Sbjct: 421 LLDSTFADVYNIGGRWGGAITAGCFLSRFTENQRWAHLDIAGVASDEGKRGMATGRPVGL 480
Query: 949 LTYYLMLKS 957
LT +L+ ++
Sbjct: 481 LTQWLLDRA 489
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 191/472 (40%), Positives = 256/472 (54%), Gaps = 39/472 (8%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKLGSTLLLRNIQKINAK 59
S DC+VVG F LS + +D G +T +L GD+ K GST LL ++ + A
Sbjct: 14 SAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAP 73
Query: 60 RIXXXXXXXXXXXXXXPFNKI------------------------EKYNLSCLXXXXXXX 95
R+ P+ K K +
Sbjct: 74 RVLVVGLGDAGKFGVAPYLKAIGDATRALKTGAVGTALLTLTELTVKARDAAWNIRQAVT 133
Query: 96 XSDN-LYRSDAQXXXXXXXXXXXXXXXFALDEKNYIDGKNAIIYGCAISKGIELTKNLGN 154
SD+ YR A A D+ A+ G A ++G+E + LGN
Sbjct: 134 VSDHAAYRYTATLGKKKVDETGLTTLAIAGDD------ARALAVGVATAEGVEFARELGN 187
Query: 155 LSANICTPTYLENISKKLSFDYK-MDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIK 213
L N CTP YL + + + + + EI++ QM+ L MGSLLSV GS+ P+LI++K
Sbjct: 188 LPPNYCTPAYLADTAAAFAGKFPGAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLK 247
Query: 214 YMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLEL 273
+ NG P VLVGKG+TFDTGG+++K ++EMKYDMCG A+++GT A + L +
Sbjct: 248 W-NGGGDARPYVLVGKGITFDTGGVNLKTQGGIEEMKYDMCGGATVIGTFVATVKAELPI 306
Query: 274 NIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVV 333
N++ V+ A EN + GN+ +P D++ SMSGKTIEV +TDAEGRLILCDALTY ERF P +
Sbjct: 307 NLVVVVPAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLILCDALTYAERFNPEAL 366
Query: 334 IDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQL 393
+D+ATLTGAC+VALGH +GL S KH L +LL AG+ D AW +P+ D YQ L
Sbjct: 367 VDVATLTGACMVALGHQTAGLMS----KHDDLANELLAAGEHVFDRAWRLPLWDEYQGLL 422
Query: 394 KSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKSGDKKGAT 445
S FAD+ NIG +ITA CFL FT+ WAHLDIAGVA G + AT
Sbjct: 423 DSTFADVYNIGGRWGGAITAGCFLSRFTENQRWAHLDIAGVASDEGKRGMAT 474
>pdb|3PEI|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From
Francisella Tularensis
Length = 486
Score = 258 bits (658), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/331 (42%), Positives = 199/331 (60%), Gaps = 7/331 (2%)
Query: 636 GCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYK-MDIEIINREQMQRLKMGSLL 694
G AI+ G K+L NL ANICT Y N +++L+ Y ++ ++++ L G L
Sbjct: 160 GSAIACGQNYAKDLQNLPANICTTDYXLNEARELTSKYATFSLDYLDQDAXAELGXGCAL 219
Query: 695 SVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAA 754
+V GS + +Y G +APIVLVGKG+ FD GGI IK + D K D G A
Sbjct: 220 AVGRGSYXSNYTVCXEYKGGNEGDAPIVLVGKGLVFDNGGICIKQAAGXDSXKXDXGGVA 279
Query: 755 SILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI 814
++ GT AI+ +NL +N++GV +EN + S +PGD++ S G T+EV +TDAEGRL+
Sbjct: 280 AVXGTXKAIAXLNLPVNVVGVXGLAENAVDARSYRPGDVLKSXKGITVEVSNTDAEGRLV 339
Query: 815 LCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 874
LCD LTY+ ++KP VID+ATLTGA +++LG SG F+ +D KL L +A S
Sbjct: 340 LCDTLTYIGKYKPKAVIDLATLTGAXIISLGDAYSGXFANSD----KLANSLEQAANASN 395
Query: 875 DTAWNMPIEDRYQKQLKSNFADISNIG-NSSADSITAACFLENFTKKYVWAHLDIAGVAW 933
D W +P+ Y K+++S AD N G + SA SI AA FL FT+ Y WAHLDIAG A
Sbjct: 396 DLIWRLPLHKPYLKKIESKVADXDNCGRDRSAGSIVAALFLSKFTEDYEWAHLDIAGSAX 455
Query: 934 KSGDKKGATGRPVTLLTYYLMLKS-PNINFK 963
A+GRPV LL +YL+ ++ N+ F+
Sbjct: 456 GDFASCKASGRPVPLLVHYLISQAKENLYFQ 486
Score = 242 bits (618), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 181/299 (60%), Gaps = 6/299 (2%)
Query: 139 GCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYK-MDIEIINREQMQRLKMGSLL 197
G AI+ G K+L NL ANICT Y N +++L+ Y ++ ++++ L G L
Sbjct: 160 GSAIACGQNYAKDLQNLPANICTTDYXLNEARELTSKYATFSLDYLDQDAXAELGXGCAL 219
Query: 198 SVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAA 257
+V GS + +Y G +APIVLVGKG+ FD GGI IK + D K D G A
Sbjct: 220 AVGRGSYXSNYTVCXEYKGGNEGDAPIVLVGKGLVFDNGGICIKQAAGXDSXKXDXGGVA 279
Query: 258 SILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI 317
++ GT AI+ +NL +N++GV +EN + S +PGD++ S G T+EV +TDAEGRL+
Sbjct: 280 AVXGTXKAIAXLNLPVNVVGVXGLAENAVDARSYRPGDVLKSXKGITVEVSNTDAEGRLV 339
Query: 318 LCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 377
LCD LTY+ ++KP VID+ATLTGA +++LG SG F+ +D KL L +A S
Sbjct: 340 LCDTLTYIGKYKPKAVIDLATLTGAXIISLGDAYSGXFANSD----KLANSLEQAANASN 395
Query: 378 DTAWNMPIEDRYQKQLKSNFADISNIG-NSSADSITAACFLENFTKKYVWAHLDIAGVA 435
D W +P+ Y K+++S AD N G + SA SI AA FL FT+ Y WAHLDIAG A
Sbjct: 396 DLIWRLPLHKPYLKKIESKVADXDNCGRDRSAGSIVAALFLSKFTEDYEWAHLDIAGSA 454
>pdb|1BPM|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1BPN|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1LAP|A Chain A, Molecular Structure Of Leucine Aminopeptidase At
2.7-Angstroms Resolution
Length = 487
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 630 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 687
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 151 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 210
Query: 688 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 746
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 211 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 270
Query: 747 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 806
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 271 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 330
Query: 807 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 866
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 331 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 386
Query: 867 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 924
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 387 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 446
Query: 925 HLDIAGVAWKSGD----KKGATGRPVTLLTYYLM 954
HLDIAGV + +KG GRP L +L
Sbjct: 447 HLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLF 480
Score = 232 bits (592), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 184/307 (59%), Gaps = 9/307 (2%)
Query: 133 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 190
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 151 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 210
Query: 191 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 249
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 211 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 270
Query: 250 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 309
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 271 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 330
Query: 310 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 369
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 331 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 386
Query: 370 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 427
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 387 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 446
Query: 428 HLDIAGV 434
HLDIAGV
Sbjct: 447 HLDIAGV 453
>pdb|1BLL|E Chain E, X-Ray Crystallographic Determination Of The Structure Of
Bovine Lens Leucine Aminopeptidase Complexed With
Amastatin: Formulation Of A Catalytic Mechanism
Featuring A Gem-Diolate Transition State
Length = 488
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 630 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 687
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 152 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 211
Query: 688 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 746
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 212 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 271
Query: 747 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 806
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 272 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 331
Query: 807 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 866
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 332 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 387
Query: 867 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 924
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 388 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 447
Query: 925 HLDIAGVAWKSGD----KKGATGRPVTLLTYYLM 954
HLDIAGV + +KG GRP L +L
Sbjct: 448 HLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLF 481
Score = 232 bits (592), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 184/307 (59%), Gaps = 9/307 (2%)
Query: 133 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 190
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 152 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 211
Query: 191 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 249
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 212 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 271
Query: 250 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 309
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 272 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 331
Query: 310 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 369
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 332 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 387
Query: 370 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 427
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 388 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 447
Query: 428 HLDIAGV 434
HLDIAGV
Sbjct: 448 HLDIAGV 454
>pdb|2EWB|A Chain A, The Crystal Structure Of Bovine Lens Leucine
Aminopeptidase In Complex With Zofenoprilat
Length = 486
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 630 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 687
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 151 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 210
Query: 688 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 746
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 211 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 270
Query: 747 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 806
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 271 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 330
Query: 807 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 866
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 331 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 386
Query: 867 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 924
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 387 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 446
Query: 925 HLDIAGVAWKSGD----KKGATGRPVTLLTYYLM 954
HLDIAGV + +KG GRP L +L
Sbjct: 447 HLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLF 480
Score = 232 bits (592), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 184/307 (59%), Gaps = 9/307 (2%)
Query: 133 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 190
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 151 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 210
Query: 191 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 249
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 211 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 270
Query: 250 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 309
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 271 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 330
Query: 310 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 369
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 331 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 386
Query: 370 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 427
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 387 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 446
Query: 428 HLDIAGV 434
HLDIAGV
Sbjct: 447 HLDIAGV 453
>pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LCP|B Chain B, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LAN|A Chain A, Leucine Aminopeptidase Complex With L-Leucinal
pdb|1LAM|A Chain A, Leucine Aminopeptidase (Unligated)
Length = 484
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 630 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 687
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 151 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 210
Query: 688 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 746
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 211 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 270
Query: 747 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 806
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 271 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 330
Query: 807 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 866
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 331 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 386
Query: 867 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 924
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 387 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 446
Query: 925 HLDIAGVAWKSGD----KKGATGRPVTLLTYYLM 954
HLDIAGV + +KG GRP L +L
Sbjct: 447 HLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLF 480
Score = 232 bits (592), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 184/307 (59%), Gaps = 9/307 (2%)
Query: 133 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 190
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 151 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 210
Query: 191 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 249
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 211 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 270
Query: 250 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 309
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 271 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 330
Query: 310 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 369
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 331 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 386
Query: 370 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 427
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 387 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 446
Query: 428 HLDIAGV 434
HLDIAGV
Sbjct: 447 HLDIAGV 453
>pdb|2J9A|A Chain A, Bllap In Complex With Microginin Fr1
Length = 487
Score = 239 bits (610), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 630 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 687
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 151 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 210
Query: 688 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 746
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 211 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 270
Query: 747 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 806
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 271 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 330
Query: 807 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 866
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 331 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 386
Query: 867 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 924
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 387 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 446
Query: 925 HLDIAGVAWKSGD----KKGATGRPVTLLTYYLM 954
HLDIAGV + +KG GRP L +L
Sbjct: 447 HLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLF 480
Score = 232 bits (592), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 184/307 (59%), Gaps = 9/307 (2%)
Query: 133 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKL-SFDYKMDIEIINREQMQR 190
+ A G + G L + L AN TPT + E + + L S K D+ I + ++
Sbjct: 151 QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEE 210
Query: 191 LKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPIVLVGKGVTFDTGGISIKPSYSMDEM 249
+MGS LSV GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M
Sbjct: 211 QEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLM 270
Query: 250 KYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLD 309
+ DM GAA+I + + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +
Sbjct: 271 RADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDN 330
Query: 310 TDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDL 369
TDAEGRLIL DAL Y F P V+I+ ATLTGA +ALG +G+F+ + + L L
Sbjct: 331 TDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNS----SWLWNKL 386
Query: 370 LRAGKMSGDTAWNMPIEDRYQKQ-LKSNFADISNIGN-SSADSITAACFLENFTKKYVWA 427
A +GD W MP+ + Y +Q + AD++NIG SA + TAA FL+ F WA
Sbjct: 387 FEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWA 446
Query: 428 HLDIAGV 434
HLDIAGV
Sbjct: 447 HLDIAGV 453
>pdb|3KQX|A Chain A, Structure Of A Protease 1
pdb|3KQX|B Chain B, Structure Of A Protease 1
pdb|3KQX|C Chain C, Structure Of A Protease 1
pdb|3KQX|D Chain D, Structure Of A Protease 1
pdb|3KQX|E Chain E, Structure Of A Protease 1
pdb|3KQX|F Chain F, Structure Of A Protease 1
pdb|3KQX|G Chain G, Structure Of A Protease 1
pdb|3KQX|H Chain H, Structure Of A Protease 1
pdb|3KQX|I Chain I, Structure Of A Protease 1
pdb|3KQX|J Chain J, Structure Of A Protease 1
pdb|3KQX|K Chain K, Structure Of A Protease 1
pdb|3KQX|L Chain L, Structure Of A Protease 1
pdb|3KQZ|A Chain A, Structure Of A Protease 2
pdb|3KQZ|B Chain B, Structure Of A Protease 2
pdb|3KQZ|C Chain C, Structure Of A Protease 2
pdb|3KQZ|D Chain D, Structure Of A Protease 2
pdb|3KQZ|E Chain E, Structure Of A Protease 2
pdb|3KQZ|F Chain F, Structure Of A Protease 2
pdb|3KQZ|G Chain G, Structure Of A Protease 2
pdb|3KQZ|H Chain H, Structure Of A Protease 2
pdb|3KQZ|I Chain I, Structure Of A Protease 2
pdb|3KQZ|J Chain J, Structure Of A Protease 2
pdb|3KQZ|K Chain K, Structure Of A Protease 2
pdb|3KQZ|L Chain L, Structure Of A Protease 2
pdb|3KR4|A Chain A, Structure Of A Protease 3
pdb|3KR4|B Chain B, Structure Of A Protease 3
pdb|3KR4|C Chain C, Structure Of A Protease 3
pdb|3KR4|D Chain D, Structure Of A Protease 3
pdb|3KR4|E Chain E, Structure Of A Protease 3
pdb|3KR4|F Chain F, Structure Of A Protease 3
pdb|3KR4|G Chain G, Structure Of A Protease 3
pdb|3KR4|H Chain H, Structure Of A Protease 3
pdb|3KR4|I Chain I, Structure Of A Protease 3
pdb|3KR4|J Chain J, Structure Of A Protease 3
pdb|3KR4|K Chain K, Structure Of A Protease 3
pdb|3KR4|L Chain L, Structure Of A Protease 3
pdb|3KR5|A Chain A, Structure Of A Protease 4
pdb|3KR5|B Chain B, Structure Of A Protease 4
pdb|3KR5|C Chain C, Structure Of A Protease 4
pdb|3KR5|D Chain D, Structure Of A Protease 4
pdb|3KR5|E Chain E, Structure Of A Protease 4
pdb|3KR5|F Chain F, Structure Of A Protease 4
pdb|3KR5|G Chain G, Structure Of A Protease 4
pdb|3KR5|H Chain H, Structure Of A Protease 4
pdb|3KR5|I Chain I, Structure Of A Protease 4
pdb|3KR5|J Chain J, Structure Of A Protease 4
pdb|3KR5|K Chain K, Structure Of A Protease 4
pdb|3KR5|L Chain L, Structure Of A Protease 4
pdb|3T8W|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|B Chain B, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|C Chain C, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|D Chain D, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|E Chain E, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|F Chain F, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|G Chain G, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|H Chain H, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|I Chain I, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|J Chain J, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|K Chain K, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|L Chain L, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 528
Score = 226 bits (575), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 190/307 (61%), Gaps = 13/307 (4%)
Query: 654 ANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN 713
+N C P L N + +L+ ++ +I+ ++++ LKMG+ LSV GS P K I + Y +
Sbjct: 219 SNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHLTYKS 278
Query: 714 GKFKEAPIVLVGKGVTFDTGGISIK--PSYSMDEMKYDMCGAASILGTLYAISEM---NL 768
+ I LVGKG+TFD+GG ++K P +D MK+DM G A++LG Y + + N+
Sbjct: 279 KGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPENV 338
Query: 769 ELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPS 828
E++ + + ENM+S NS +PGDI+ + +GKTIEV +TDAEGRL L DAL Y E+
Sbjct: 339 EIHFLSAVC--ENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVD 396
Query: 829 VVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQK 888
++DIATLTGA + +LG +G+F N+E L+ +L++ K S + W +PI + Y+
Sbjct: 397 YIVDIATLTGAMLYSLGTSYAGVFGNNEE----LINKILQSSKTSNEPVWWLPIINEYRA 452
Query: 889 QLKSNFADISNIGNS-SADSITAACFLENFTKKYVWAHLDIAGVAWKSGDKKGATGRPVT 947
L S +ADI+ I +S A SI A+ FL+ F + WAH+DIAGV+W +K G V
Sbjct: 453 TLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHIDIAGVSWNFKARK-PKGFGVR 511
Query: 948 LLTYYLM 954
LLT +++
Sbjct: 512 LLTEFVL 518
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 186/300 (62%), Gaps = 14/300 (4%)
Query: 157 ANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN 216
+N C P L N + +L+ ++ +I+ ++++ LKMG+ LSV GS P K I + Y +
Sbjct: 219 SNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHLTYKS 278
Query: 217 GKFKEAPIVLVGKGVTFDTGGISIK--PSYSMDEMKYDMCGAASILGTLYAISEM---NL 271
+ I LVGKG+TFD+GG ++K P +D MK+DM G A++LG Y + + N+
Sbjct: 279 KGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPENV 338
Query: 272 ELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPS 331
E++ + + ENM+S NS +PGDI+ + +GKTIEV +TDAEGRL L DAL Y E+
Sbjct: 339 EIHFLSAVC--ENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVD 396
Query: 332 VVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQK 391
++DIATLTGA + +LG +G+F N+E L+ +L++ K S + W +PI + Y+
Sbjct: 397 YIVDIATLTGAMLYSLGTSYAGVFGNNEE----LINKILQSSKTSNEPVWWLPIINEYRA 452
Query: 392 QLKSNFADISNIGNS-SADSITAACFLENFTKKYVWAHLDIAGVAW--KSGDKKGATVEL 448
L S +ADI+ I +S A SI A+ FL+ F + WAH+DIAGV+W K+ KG V L
Sbjct: 453 TLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHIDIAGVSWNFKARKPKGFGVRL 512
>pdb|3KZW|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|B Chain B, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|C Chain C, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|D Chain D, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|E Chain E, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|F Chain F, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|G Chain G, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|H Chain H, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|I Chain I, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|J Chain J, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|K Chain K, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|L Chain L, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
Length = 515
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 197/326 (60%), Gaps = 14/326 (4%)
Query: 636 GCAISKGIELTKNLGNLSANICTP-TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLL 694
G +I + I L ++ N+ N+ TP T+ E+I + K+ +++ + + + G L
Sbjct: 193 GISIGQSINLARDFSNMPPNVLTPQTFAEDIVNHFK-NTKVKVDVKDYDTLVSEGFGLLQ 251
Query: 695 SVTHGSSEPPKLIIIKYMNGKFK-EAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGA 753
+V GS P+L+ I Y NGK K EAPI LVGKG+T+D+GG SIK M MK+DMCGA
Sbjct: 252 AVGKGSKHKPRLVTITY-NGKDKDEAPIALVGKGITYDSGGYSIKTKNGMATMKFDMCGA 310
Query: 754 ASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRL 813
A+++G + A S + L +NI+GV+ +ENM++ S KP D+ ++SG+T+EV++TDAEGRL
Sbjct: 311 ANVVGIIEAASRLQLPVNIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRL 370
Query: 814 ILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVL-DLLRAGKM 872
+L DA+ Y +++PSV++D ATLTGA +VALG + F E ++K++L D+L+
Sbjct: 371 VLADAVFYANQYQPSVIMDFATLTGAAIVALGDDKAAAF----ESNSKVILNDILQISSE 426
Query: 873 SGDTAWNMPIEDRYQKQLK-SNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGV 931
+ + +PI + +K S+ AD+ N N ++ AA F+ +F+ + H DIAG
Sbjct: 427 VDEMVFELPITATERASIKHSDIADLVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGP 486
Query: 932 AWKS----GDKKGATGRPVTLLTYYL 953
A + KG TG + + +L
Sbjct: 487 ATTNKASYNGPKGPTGFMIPTIVQWL 512
Score = 219 bits (558), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 188/301 (62%), Gaps = 10/301 (3%)
Query: 139 GCAISKGIELTKNLGNLSANICTP-TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLL 197
G +I + I L ++ N+ N+ TP T+ E+I + K+ +++ + + + G L
Sbjct: 193 GISIGQSINLARDFSNMPPNVLTPQTFAEDIVNHFK-NTKVKVDVKDYDTLVSEGFGLLQ 251
Query: 198 SVTHGSSEPPKLIIIKYMNGKFK-EAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGA 256
+V GS P+L+ I Y NGK K EAPI LVGKG+T+D+GG SIK M MK+DMCGA
Sbjct: 252 AVGKGSKHKPRLVTITY-NGKDKDEAPIALVGKGITYDSGGYSIKTKNGMATMKFDMCGA 310
Query: 257 ASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRL 316
A+++G + A S + L +NI+GV+ +ENM++ S KP D+ ++SG+T+EV++TDAEGRL
Sbjct: 311 ANVVGIIEAASRLQLPVNIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRL 370
Query: 317 ILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVL-DLLRAGKM 375
+L DA+ Y +++PSV++D ATLTGA +VALG + F E ++K++L D+L+
Sbjct: 371 VLADAVFYANQYQPSVIMDFATLTGAAIVALGDDKAAAF----ESNSKVILNDILQISSE 426
Query: 376 SGDTAWNMPIEDRYQKQLK-SNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGV 434
+ + +PI + +K S+ AD+ N N ++ AA F+ +F+ + H DIAG
Sbjct: 427 VDEMVFELPITATERASIKHSDIADLVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGP 486
Query: 435 A 435
A
Sbjct: 487 A 487
>pdb|3IJ3|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Cytosol
Aminopeptidase From Coxiella Burnetii
Length = 482
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 14/306 (4%)
Query: 643 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE 702
I L ++L N A P+ L K ++ +++ ++II + ++ + ++ +V S
Sbjct: 170 IYLIRDLINTPAEDMGPSELAQAVKHVAKEFEAKVKIIESKDLE-TEFPAIYAVGRAGSR 228
Query: 703 PPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYA 762
PP LI +K+ G K + LVGKGV FD+GG+ IK M MK DM GAA LG
Sbjct: 229 PPLLIDLKW--GDIKAPKVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARM 286
Query: 763 ISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYV 822
I L + + +I A EN + S +PGD+V + + KTIE+ +TDAEGR++L DAL
Sbjct: 287 IMLQQLPVRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAEGRVVLADALAEA 346
Query: 823 ERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPI 882
+ P ++ID +TLTGA +ALG + LF+ D L L+ A + D W +P+
Sbjct: 347 VKEDPDLIIDFSTLTGAARIALGPNLPALFANQD----SLAQALIDASLKTDDPLWRLPL 402
Query: 883 EDRYQKQLKSNFADISNIG-NSSADSITAACFLENFTKKYV-WAHLDIAGVAWKSGDKKG 940
Y+ LKS AD++N N A +ITAA FL++F + WAH DI AW D
Sbjct: 403 FQPYRNYLKSEVADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDI--FAWNLED--- 457
Query: 941 ATGRPV 946
GRP+
Sbjct: 458 LPGRPI 463
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 164/303 (54%), Gaps = 11/303 (3%)
Query: 146 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE 205
I L ++L N A P+ L K ++ +++ ++II + ++ + ++ +V S
Sbjct: 170 IYLIRDLINTPAEDMGPSELAQAVKHVAKEFEAKVKIIESKDLE-TEFPAIYAVGRAGSR 228
Query: 206 PPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYA 265
PP LI +K+ G K + LVGKGV FD+GG+ IK M MK DM GAA LG
Sbjct: 229 PPLLIDLKW--GDIKAPKVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARM 286
Query: 266 ISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYV 325
I L + + +I A EN + S +PGD+V + + KTIE+ +TDAEGR++L DAL
Sbjct: 287 IMLQQLPVRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAEGRVVLADALAEA 346
Query: 326 ERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPI 385
+ P ++ID +TLTGA +ALG + LF+ D L L+ A + D W +P+
Sbjct: 347 VKEDPDLIIDFSTLTGAARIALGPNLPALFANQD----SLAQALIDASLKTDDPLWRLPL 402
Query: 386 EDRYQKQLKSNFADISNIG-NSSADSITAACFLENFTKKYV-WAHLDIAGVAWKSGDKKG 443
Y+ LKS AD++N N A +ITAA FL++F + WAH DI AW D G
Sbjct: 403 FQPYRNYLKSEVADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDI--FAWNLEDLPG 460
Query: 444 ATV 446
+
Sbjct: 461 RPI 463
>pdb|4EFD|A Chain A, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|B Chain B, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|C Chain C, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|D Chain D, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|E Chain E, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|F Chain F, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
Length = 522
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 169/324 (52%), Gaps = 14/324 (4%)
Query: 638 AISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVT 697
A++ +L + L + N+ T I++ + D+++I + + G + SV
Sbjct: 202 AVATSTQLCQRLVDAPPNLLTTATFTEIAQGYAKALGFDVDVICGDDLCERGYGGIYSVG 261
Query: 698 HGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASIL 757
+ E P+L+ + Y + LVGKG+ +D GG+++KP+ M MK+DM GAA++
Sbjct: 262 KAAFEAPRLVTLLYTPKGTPVKKVSLVGKGIVYDCGGLALKPADYMKLMKHDMGGAAAVF 321
Query: 758 GTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCD 817
+ + + + +EN + S + DI+V SGKT+EV++TDAEGR++L D
Sbjct: 322 CGFLTAVRLQQPVQLSCTLCLAENAIGPKSYRNDDIIVMKSGKTVEVINTDAEGRIVLGD 381
Query: 818 ALTYVE---RFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 874
+ + F P VVID+ATLTGA +A G H++GL+ + +LRAG+ SG
Sbjct: 382 GVFHATNELSFTPDVVIDMATLTGAQGIATGRHHAGLYVNEEGAEAA----MLRAGRESG 437
Query: 875 DTAWN-MPIEDRYQKQLKSNFADISNIGNSSADSITAAC----FLENFTKKYVWAHLDIA 929
+T + + + ++ + KSN AD++N+ D+ +C + + K+ AH+ +
Sbjct: 438 ETCFPVLYCPEYHEPEFKSNHADMTNLMERR-DNAGVSCAGYFITTHLSPKFTGAHIHV- 495
Query: 930 GVAWKSGDKKGATGRPVTLLTYYL 953
+A+ + GATG LLT Y
Sbjct: 496 DLAYPVFNSNGATGFGPALLTEYF 519
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 164/313 (52%), Gaps = 14/313 (4%)
Query: 141 AISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVT 200
A++ +L + L + N+ T I++ + D+++I + + G + SV
Sbjct: 202 AVATSTQLCQRLVDAPPNLLTTATFTEIAQGYAKALGFDVDVICGDDLCERGYGGIYSVG 261
Query: 201 HGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASIL 260
+ E P+L+ + Y + LVGKG+ +D GG+++KP+ M MK+DM GAA++
Sbjct: 262 KAAFEAPRLVTLLYTPKGTPVKKVSLVGKGIVYDCGGLALKPADYMKLMKHDMGGAAAVF 321
Query: 261 GTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCD 320
+ + + + +EN + S + DI+V SGKT+EV++TDAEGR++L D
Sbjct: 322 CGFLTAVRLQQPVQLSCTLCLAENAIGPKSYRNDDIIVMKSGKTVEVINTDAEGRIVLGD 381
Query: 321 ALTYVE---RFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 377
+ + F P VVID+ATLTGA +A G H++GL+ + +LRAG+ SG
Sbjct: 382 GVFHATNELSFTPDVVIDMATLTGAQGIATGRHHAGLYVNEEGAEAA----MLRAGRESG 437
Query: 378 DTAWN-MPIEDRYQKQLKSNFADISNIGNSSADSITAAC----FLENFTKKYVWAHLDIA 432
+T + + + ++ + KSN AD++N+ D+ +C + + K+ AH+ +
Sbjct: 438 ETCFPVLYCPEYHEPEFKSNHADMTNLMERR-DNAGVSCAGYFITTHLSPKFTGAHIHV- 495
Query: 433 GVAWKSGDKKGAT 445
+A+ + GAT
Sbjct: 496 DLAYPVFNSNGAT 508
>pdb|2HB6|A Chain A, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
(Lap1)
pdb|2HB6|B Chain B, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
(Lap1)
pdb|2HC9|A Chain A, Structure Of Caenorhabditis Elegans Leucine
Aminopeptidase-Zinc Complex (Lap1)
Length = 491
Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 161/330 (48%), Gaps = 28/330 (8%)
Query: 639 ISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTH 698
+S+ + T L + ANI T L + + K+ I +I E++ + G + V
Sbjct: 166 LSESVRETARLIDTPANILTTDALVDEAVKVGNATGSKITVIRGEELLKAGFGGIYHVGK 225
Query: 699 GSSEPPKLIIIKYMNGKFKEAP-----IVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGA 753
PP +++ + E P I LVGKGV +DTGG+ IK M MK DM GA
Sbjct: 226 AGPTPPAFVVLSH------EVPGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGA 279
Query: 754 ASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRL 813
A +L A+ + + + EN +S + KP DI+ +SGKT+E+ +TDAEGRL
Sbjct: 280 AGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRL 339
Query: 814 ILCDALTYV-ERFKPSVVIDIATLTGACVVALGH-HNSGLFSRNDEKHTKLVLDLLRAGK 871
IL D + Y E K + + D+ATLTGA G H + + NDE +L ++++AGK
Sbjct: 340 ILADGVFYAKETLKATTIFDMATLTGAQAWLSGRLHGAAM--TNDE---QLENEIIKAGK 394
Query: 872 MSGDTAWNMPI-EDRYQKQLKSNFADI--SNIGNSSADSITAACFL----ENFTKKYVWA 924
SGD M D + LKS+ AD+ SN+G A L F + W
Sbjct: 395 ASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWL 454
Query: 925 HLDIAGVAWKSGDKKGATGRPV--TLLTYY 952
HLDIA A + GD+ G + TLL Y
Sbjct: 455 HLDIAAPA-EVGDRGTGYGPALFSTLLGKY 483
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 155/314 (49%), Gaps = 26/314 (8%)
Query: 142 ISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTH 201
+S+ + T L + ANI T L + + K+ I +I E++ + G + V
Sbjct: 166 LSESVRETARLIDTPANILTTDALVDEAVKVGNATGSKITVIRGEELLKAGFGGIYHVGK 225
Query: 202 GSSEPPKLIIIKYMNGKFKEAP-----IVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGA 256
PP +++ + E P I LVGKGV +DTGG+ IK M MK DM GA
Sbjct: 226 AGPTPPAFVVLSH------EVPGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGA 279
Query: 257 ASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRL 316
A +L A+ + + + EN +S + KP DI+ +SGKT+E+ +TDAEGRL
Sbjct: 280 AGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRL 339
Query: 317 ILCDALTYV-ERFKPSVVIDIATLTGACVVALGH-HNSGLFSRNDEKHTKLVLDLLRAGK 374
IL D + Y E K + + D+ATLTGA G H + + NDE +L ++++AGK
Sbjct: 340 ILADGVFYAKETLKATTIFDMATLTGAQAWLSGRLHGAAM--TNDE---QLENEIIKAGK 394
Query: 375 MSGDTAWNMPI-EDRYQKQLKSNFADI--SNIGNSSADSITAACFL----ENFTKKYVWA 427
SGD M D + LKS+ AD+ SN+G A L F + W
Sbjct: 395 ASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWL 454
Query: 428 HLDIAGVAWKSGDK 441
HLDIA A + GD+
Sbjct: 455 HLDIAAPA-EVGDR 467
>pdb|3U4Y|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
(Dtox_1751) From Desulfotomaculum Acetoxidans Dsm 771.
pdb|3U4Y|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
(Dtox_1751) From Desulfotomaculum Acetoxidans Dsm 771
Length = 331
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 230 GVTFDTGGISIKPSYSMDEMKYDMCG----AASILGTLYAISEMNLELNIIGVIVASENM 285
GV FDTG I + + G A+++G I E NI + N
Sbjct: 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN 221
Query: 286 LSGNSTKPGDIVVSMSGKTIEVL---DTDAEGRLILCDALTYVERFKPSVVIDIATLTGA 342
L PG IVVS G T+ VL D L L++V+ F ++ID L GA
Sbjct: 222 L------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275
Query: 343 CVVALGHHNSGLF 355
AL + LF
Sbjct: 276 NQXALNKTETKLF 288
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 727 GVTFDTGGISIKPSYSMDEMKYDMCG----AASILGTLYAISEMNLELNIIGVIVASENM 782
GV FDTG I + + G A+++G I E NI + N
Sbjct: 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN 221
Query: 783 LSGNSTKPGDIVVSMSGKTIEVL---DTDAEGRLILCDALTYVERFKPSVVIDIATLTGA 839
L PG IVVS G T+ VL D L L++V+ F ++ID L GA
Sbjct: 222 L------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275
Query: 840 CVVALGHHNSGLF 852
AL + LF
Sbjct: 276 NQXALNKTETKLF 288
>pdb|3GKR|A Chain A, Crystal Structure Of Weissella Viridescens
Femx:udp-Murnac-Hexapeptide Complex
Length = 336
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 277 GVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI-----LCDALTYVERFKPS 331
G I+A+ +ML G++ + G ++V D D RL+ D YV RF P
Sbjct: 52 GAIIAAMSMLLGDTPTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKALDGRAYVLRFDPE 111
Query: 332 VV 333
V
Sbjct: 112 VA 113
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 774 GVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI-----LCDALTYVERFKPS 828
G I+A+ +ML G++ + G ++V D D RL+ D YV RF P
Sbjct: 52 GAIIAAMSMLLGDTPTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKALDGRAYVLRFDPE 111
Query: 829 VV 830
V
Sbjct: 112 VA 113
>pdb|1XF8|A Chain A, Crystal Structure Of Weissella Viridescens Femx (Y254f)
Mutant
Length = 335
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 277 GVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI-----LCDALTYVERFKPS 331
G I+A+ +ML G++ + G ++V D D RL+ D YV RF P
Sbjct: 51 GAIIAAMSMLLGDTPTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKALDGRAYVLRFDPE 110
Query: 332 VV 333
V
Sbjct: 111 VA 112
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 774 GVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI-----LCDALTYVERFKPS 828
G I+A+ +ML G++ + G ++V D D RL+ D YV RF P
Sbjct: 51 GAIIAAMSMLLGDTPTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKALDGRAYVLRFDPE 110
Query: 829 VV 830
V
Sbjct: 111 VA 112
>pdb|1XE4|A Chain A, Crystal Structure Of Weissella Viridescens Femx (K36m)
Mutant
Length = 335
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 277 GVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI-----LCDALTYVERFKPS 331
G I+A+ +ML G++ + G ++V D D RL+ D YV RF P
Sbjct: 51 GAIIAAMSMLLGDTPTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKALDGRAYVLRFDPE 110
Query: 332 VV 333
V
Sbjct: 111 VA 112
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 774 GVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI-----LCDALTYVERFKPS 828
G I+A+ +ML G++ + G ++V D D RL+ D YV RF P
Sbjct: 51 GAIIAAMSMLLGDTPTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKALDGRAYVLRFDPE 110
Query: 829 VV 830
V
Sbjct: 111 VA 112
>pdb|1NE9|A Chain A, Crystal Structure Of Weissella Viridescens Femx At 1.7 Ang
Resolution
pdb|1P4N|A Chain A, Crystal Structure Of Weissella Viridescens
Femx:udp-Murnac- Pentapeptide Complex
pdb|1XIX|A Chain A, Crystal Structure Of Weissella Viridescens Femx Form Ii
Length = 335
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 277 GVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI-----LCDALTYVERFKPS 331
G I+A+ +ML G++ + G ++V D D RL+ D YV RF P
Sbjct: 51 GAIIAAMSMLLGDTPTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKALDGRAYVLRFDPE 110
Query: 332 VV 333
V
Sbjct: 111 VA 112
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 774 GVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI-----LCDALTYVERFKPS 828
G I+A+ +ML G++ + G ++V D D RL+ D YV RF P
Sbjct: 51 GAIIAAMSMLLGDTPTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKALDGRAYVLRFDPE 110
Query: 829 VV 830
V
Sbjct: 111 VA 112
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 306 EVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGA 342
+ LD DAEG+ + DAL + R K +I A GA
Sbjct: 182 QALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGA 218
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 803 EVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGA 839
+ LD DAEG+ + DAL + R K +I A GA
Sbjct: 182 QALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGA 218
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 306 EVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGA 342
+ LD DAEG+ + DAL + R K +I A GA
Sbjct: 159 QALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGA 195
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 803 EVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGA 839
+ LD DAEG+ + DAL + R K +I A GA
Sbjct: 159 QALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGA 195
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 306 EVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGA 342
+ LD DAEG+ + DAL + R K +I A GA
Sbjct: 158 QALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGA 194
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 803 EVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGA 839
+ LD DAEG+ + DAL + R K +I A GA
Sbjct: 158 QALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGA 194
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 346 ALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGN 405
A ++N +F RN + D G+ G++ W ED Y + LK N + ++ N
Sbjct: 33 ASNYYNGCIFHRNIKGFMVQTGDPTGTGR-GGNSIWGKKFEDEYSEYLKHNVRGVVSMAN 91
Query: 406 SSADSITAACFLENFTKKYVWAHLDI 431
+ ++ + F + K+ HLD+
Sbjct: 92 NGPNT-NGSQFFITYGKQ---PHLDM 113
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 843 ALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGN 902
A ++N +F RN + D G+ G++ W ED Y + LK N + ++ N
Sbjct: 33 ASNYYNGCIFHRNIKGFMVQTGDPTGTGR-GGNSIWGKKFEDEYSEYLKHNVRGVVSMAN 91
Query: 903 SSADSITAACFLENFTKKYVWAHLDI 928
+ ++ + F + K+ HLD+
Sbjct: 92 NGPNT-NGSQFFITYGKQ---PHLDM 113
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 346 ALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGN 405
A ++N +F RN + D G+ G++ W ED Y + LK N + ++ N
Sbjct: 39 ASNYYNGCIFHRNIKGFMVQTGDPTGTGR-GGNSIWGKKFEDEYSEYLKHNVRGVVSMAN 97
Query: 406 SSADSITAACFLENFTKKYVWAHLDI 431
+ ++ + F + K+ HLD+
Sbjct: 98 NGPNT-NGSQFFITYGKQ---PHLDM 119
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 843 ALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGN 902
A ++N +F RN + D G+ G++ W ED Y + LK N + ++ N
Sbjct: 39 ASNYYNGCIFHRNIKGFMVQTGDPTGTGR-GGNSIWGKKFEDEYSEYLKHNVRGVVSMAN 97
Query: 903 SSADSITAACFLENFTKKYVWAHLDI 928
+ ++ + F + K+ HLD+
Sbjct: 98 NGPNT-NGSQFFITYGKQ---PHLDM 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,371,491
Number of Sequences: 62578
Number of extensions: 990968
Number of successful extensions: 2774
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2649
Number of HSP's gapped (non-prelim): 56
length of query: 963
length of database: 14,973,337
effective HSP length: 108
effective length of query: 855
effective length of database: 8,214,913
effective search space: 7023750615
effective search space used: 7023750615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)