Query psy3774
Match_columns 963
No_of_seqs 345 out of 2785
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 16:58:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0260 PepB Leucyl aminopepti 100.0 1E-137 2E-142 1181.6 49.7 466 475-957 13-484 (485)
2 PRK00913 multifunctional amino 100.0 4E-137 8E-142 1183.0 54.8 476 458-954 1-482 (483)
3 cd00433 Peptidase_M17 Cytosol 100.0 6E-132 1E-136 1143.1 52.2 459 477-953 2-468 (468)
4 PTZ00412 leucyl aminopeptidase 100.0 3E-132 6E-137 1133.5 48.1 437 504-957 65-538 (569)
5 COG0260 PepB Leucyl aminopepti 100.0 2E-123 5E-128 1063.6 42.8 432 6-447 15-471 (485)
6 PRK00913 multifunctional amino 100.0 7E-123 1E-127 1064.9 46.9 433 4-447 14-472 (483)
7 cd00433 Peptidase_M17 Cytosol 100.0 3E-120 6E-125 1046.4 46.9 434 5-448 1-460 (468)
8 PTZ00412 leucyl aminopeptidase 100.0 3E-118 6E-123 1019.0 40.9 401 33-447 65-525 (569)
9 PF00883 Peptidase_M17: Cytoso 100.0 6E-118 1E-122 970.2 27.3 305 643-951 1-311 (311)
10 PRK05015 aminopeptidase B; Pro 100.0 2E-115 4E-120 975.4 39.0 373 551-955 38-423 (424)
11 PF00883 Peptidase_M17: Cytoso 100.0 6E-110 1E-114 907.5 26.4 299 146-448 1-305 (311)
12 KOG2597|consensus 100.0 1E-106 3E-111 914.2 37.6 465 473-957 22-511 (513)
13 PRK05015 aminopeptidase B; Pro 100.0 5E-105 1E-109 891.4 34.7 310 134-447 91-412 (424)
14 KOG2597|consensus 100.0 1E-101 3E-106 873.5 34.2 423 4-439 24-484 (513)
15 PF02789 Peptidase_M17_N: Cyto 99.7 2.5E-17 5.3E-22 158.9 11.3 124 480-607 1-126 (126)
16 PF02789 Peptidase_M17_N: Cyto 99.3 1.6E-12 3.5E-17 125.4 7.5 99 9-110 1-126 (126)
17 PRK04443 acetyl-lysine deacety 90.2 3.3 7.2E-05 47.1 12.9 109 143-280 6-119 (348)
18 PRK06915 acetylornithine deace 89.1 8.6 0.00019 44.9 15.4 124 143-284 17-169 (422)
19 PRK04443 acetyl-lysine deacety 89.0 5 0.00011 45.6 13.1 113 640-781 6-123 (348)
20 TIGR01910 DapE-ArgE acetylorni 88.7 2.6 5.6E-05 48.3 10.7 119 147-284 2-140 (375)
21 TIGR01910 DapE-ArgE acetylorni 88.6 3 6.6E-05 47.8 11.1 120 644-781 2-140 (375)
22 PRK13009 succinyl-diaminopimel 88.5 7.2 0.00016 44.6 14.0 117 641-782 3-135 (375)
23 PRK06915 acetylornithine deace 88.2 5.8 0.00013 46.3 13.2 123 640-781 17-169 (422)
24 PRK07522 acetylornithine deace 87.4 5.1 0.00011 46.0 12.0 125 143-283 4-136 (385)
25 PRK13004 peptidase; Reviewed 87.1 13 0.00028 43.2 15.2 107 144-278 16-139 (399)
26 PRK13009 succinyl-diaminopimel 86.9 10 0.00022 43.4 13.9 116 144-284 3-134 (375)
27 PRK07522 acetylornithine deace 86.8 6.5 0.00014 45.1 12.4 120 640-781 4-137 (385)
28 PRK13004 peptidase; Reviewed 86.5 9.9 0.00021 44.1 13.8 108 641-776 16-140 (399)
29 PRK13983 diaminopimelate amino 86.4 8.3 0.00018 44.4 13.0 122 641-781 6-152 (400)
30 PRK08652 acetylornithine deace 85.7 6.4 0.00014 44.3 11.4 118 144-284 3-120 (347)
31 PRK06133 glutamate carboxypept 84.8 15 0.00031 43.1 14.1 125 144-284 38-171 (410)
32 PRK13983 diaminopimelate amino 84.8 10 0.00022 43.7 12.6 122 144-284 6-152 (400)
33 PRK06133 glutamate carboxypept 84.6 26 0.00055 41.0 16.0 126 640-782 37-172 (410)
34 PRK09104 hypothetical protein; 84.0 13 0.00028 44.2 13.4 119 640-781 17-163 (464)
35 PRK08596 acetylornithine deace 83.8 13 0.00029 43.5 13.2 119 640-781 13-153 (421)
36 PRK06837 acetylornithine deace 83.5 17 0.00037 42.6 14.1 120 144-281 21-170 (427)
37 PRK08588 succinyl-diaminopimel 83.2 12 0.00026 42.8 12.4 117 641-782 3-136 (377)
38 PRK09104 hypothetical protein; 82.9 13 0.00029 44.0 13.0 119 143-284 17-163 (464)
39 PRK07906 hypothetical protein; 82.5 8.5 0.00018 45.1 11.0 117 146-284 2-140 (426)
40 PRK07907 hypothetical protein; 82.4 29 0.00064 41.0 15.5 119 639-781 17-156 (449)
41 PRK07906 hypothetical protein; 81.8 8.5 0.00018 45.1 10.6 118 643-782 2-141 (426)
42 PRK06837 acetylornithine deace 81.3 24 0.00052 41.5 14.1 123 640-780 20-172 (427)
43 PRK08588 succinyl-diaminopimel 81.2 15 0.00032 42.2 12.1 118 144-285 3-136 (377)
44 PRK09133 hypothetical protein; 80.0 14 0.00031 44.0 11.8 121 642-781 39-176 (472)
45 TIGR01892 AcOrn-deacetyl acety 79.6 12 0.00026 42.5 10.6 116 148-284 2-131 (364)
46 PRK07318 dipeptidase PepV; Rev 79.3 21 0.00046 42.5 12.9 114 640-781 14-153 (466)
47 PRK09133 hypothetical protein; 78.7 16 0.00034 43.6 11.7 122 144-284 38-176 (472)
48 TIGR01892 AcOrn-deacetyl acety 78.5 15 0.00032 41.7 10.9 116 645-781 2-131 (364)
49 PRK08554 peptidase; Reviewed 77.9 22 0.00049 42.1 12.5 114 642-781 3-136 (438)
50 PRK08652 acetylornithine deace 77.9 20 0.00043 40.4 11.7 119 641-782 3-121 (347)
51 PRK07473 carboxypeptidase; Pro 77.9 36 0.00077 39.4 13.9 125 143-284 11-147 (376)
52 PRK13013 succinyl-diaminopimel 77.2 25 0.00053 41.1 12.5 125 640-782 14-159 (427)
53 PRK00466 acetyl-lysine deacety 77.1 30 0.00065 39.3 12.9 98 641-770 11-114 (346)
54 PRK07318 dipeptidase PepV; Rev 77.1 26 0.00057 41.7 12.9 114 143-284 14-153 (466)
55 TIGR01902 dapE-lys-deAc N-acet 77.0 24 0.00053 39.8 12.0 105 645-780 2-112 (336)
56 PRK07338 hypothetical protein; 76.7 27 0.00059 40.4 12.6 124 640-782 17-165 (402)
57 PRK13007 succinyl-diaminopimel 74.7 36 0.00078 38.5 12.7 40 143-182 7-47 (352)
58 PRK00466 acetyl-lysine deacety 73.7 37 0.0008 38.6 12.4 41 144-184 11-51 (346)
59 TIGR01880 Ac-peptdase-euk N-ac 73.0 37 0.0008 39.4 12.5 119 641-781 10-147 (400)
60 PRK00431 RNase III inhibitor; 72.6 69 0.0015 33.1 13.1 147 458-622 3-159 (177)
61 PRK12893 allantoate amidohydro 71.4 41 0.0009 39.1 12.4 106 642-781 12-130 (412)
62 TIGR01880 Ac-peptdase-euk N-ac 71.1 32 0.0007 39.8 11.4 119 144-284 10-147 (400)
63 PRK13007 succinyl-diaminopimel 71.0 53 0.0011 37.1 12.9 114 640-783 7-128 (352)
64 TIGR01902 dapE-lys-deAc N-acet 70.6 41 0.0009 37.9 11.9 95 148-270 2-101 (336)
65 TIGR01246 dapE_proteo succinyl 70.3 39 0.00085 38.6 11.7 113 146-284 2-131 (370)
66 TIGR01246 dapE_proteo succinyl 70.2 43 0.00094 38.2 12.1 114 643-782 2-132 (370)
67 PRK07079 hypothetical protein; 69.4 61 0.0013 38.6 13.5 121 641-781 18-163 (469)
68 PLN02280 IAA-amino acid hydrol 68.8 67 0.0014 38.8 13.6 127 138-284 92-221 (478)
69 cd02903 Macro_BAL_like Macro d 68.8 1E+02 0.0022 30.6 12.8 127 459-592 2-133 (137)
70 PLN02280 IAA-amino acid hydrol 68.7 1E+02 0.0023 37.2 15.2 128 636-782 93-222 (478)
71 PRK05111 acetylornithine deace 68.6 46 0.001 38.1 11.9 119 641-780 6-143 (383)
72 PRK08262 hypothetical protein; 68.4 24 0.00052 42.2 9.8 119 642-784 46-192 (486)
73 PRK08651 succinyl-diaminopimel 67.9 41 0.0009 38.7 11.4 43 143-185 6-51 (394)
74 TIGR01891 amidohydrolases amid 67.4 65 0.0014 36.9 12.7 116 644-780 3-124 (363)
75 PRK08554 peptidase; Reviewed 67.2 69 0.0015 38.0 13.2 115 145-284 3-136 (438)
76 PLN02693 IAA-amino acid hydrol 66.4 1.6E+02 0.0034 35.2 15.9 123 143-284 47-171 (437)
77 TIGR03526 selenium_YgeY putati 66.4 1.2E+02 0.0025 35.3 14.7 115 640-781 13-143 (395)
78 PRK13013 succinyl-diaminopimel 66.3 38 0.00082 39.5 10.7 124 143-284 14-158 (427)
79 PRK08201 hypothetical protein; 66.2 67 0.0014 38.1 12.9 120 640-782 14-156 (456)
80 PLN02693 IAA-amino acid hydrol 65.6 94 0.002 37.0 13.9 123 640-781 47-171 (437)
81 PRK07473 carboxypeptidase; Pro 64.7 1.1E+02 0.0024 35.3 14.1 126 640-782 11-148 (376)
82 TIGR01883 PepT-like peptidase 64.5 78 0.0017 36.0 12.6 123 643-780 3-133 (361)
83 PRK08201 hypothetical protein; 64.0 82 0.0018 37.3 13.1 120 143-285 14-156 (456)
84 PRK07907 hypothetical protein; 63.9 1.2E+02 0.0027 35.8 14.5 119 142-284 17-156 (449)
85 PRK12893 allantoate amidohydro 63.1 77 0.0017 36.9 12.5 107 144-284 11-130 (412)
86 PRK08596 acetylornithine deace 63.1 98 0.0021 36.3 13.4 119 143-284 13-153 (421)
87 TIGR01891 amidohydrolases amid 62.4 92 0.002 35.6 12.7 62 147-214 3-64 (363)
88 PRK07338 hypothetical protein; 62.1 72 0.0016 37.0 11.9 122 144-284 18-164 (402)
89 PRK12892 allantoate amidohydro 60.7 99 0.0021 35.9 12.8 106 642-781 12-128 (412)
90 PRK15026 aminoacyl-histidine d 59.8 94 0.002 37.6 12.6 62 145-214 12-76 (485)
91 TIGR01887 dipeptidaselike dipe 59.4 1.1E+02 0.0024 36.5 12.9 113 144-284 3-141 (447)
92 PRK12892 allantoate amidohydro 59.0 1.1E+02 0.0024 35.6 12.8 105 145-283 12-127 (412)
93 TIGR01887 dipeptidaselike dipe 58.1 1.2E+02 0.0025 36.3 12.9 113 641-781 3-141 (447)
94 PRK15026 aminoacyl-histidine d 57.3 1.1E+02 0.0023 37.1 12.5 62 642-711 12-76 (485)
95 PRK06446 hypothetical protein; 56.0 1.1E+02 0.0023 36.2 12.1 118 641-782 3-138 (436)
96 TIGR01883 PepT-like peptidase 56.0 1.6E+02 0.0034 33.5 13.1 121 147-283 4-133 (361)
97 cd00986 PDZ_LON_protease PDZ d 55.8 12 0.00027 33.0 3.3 27 777-803 14-40 (79)
98 PF13180 PDZ_2: PDZ domain; PD 55.7 4.4 9.5E-05 36.3 0.4 28 775-802 18-46 (82)
99 PRK08651 succinyl-diaminopimel 55.5 1.1E+02 0.0023 35.4 11.7 120 640-781 6-146 (394)
100 PRK07079 hypothetical protein; 55.3 1.4E+02 0.0029 35.7 12.9 121 144-284 18-163 (469)
101 PRK05469 peptidase T; Provisio 55.2 1.9E+02 0.0041 33.7 13.9 128 643-782 5-176 (408)
102 PRK06156 hypothetical protein; 54.2 1.8E+02 0.0039 35.4 13.8 118 144-283 47-188 (520)
103 PRK05469 peptidase T; Provisio 53.6 1.6E+02 0.0034 34.3 12.9 127 146-284 5-175 (408)
104 PRK12891 allantoate amidohydro 53.2 67 0.0015 37.6 9.7 87 662-782 42-131 (414)
105 cd00986 PDZ_LON_protease PDZ d 53.1 14 0.00031 32.5 3.3 27 280-306 14-40 (79)
106 cd02908 Macro_Appr_pase_like M 52.9 2.1E+02 0.0045 29.3 12.1 141 468-622 6-152 (165)
107 PRK07205 hypothetical protein; 52.4 1.9E+02 0.0041 34.2 13.4 116 143-284 11-151 (444)
108 PRK06156 hypothetical protein; 51.6 2.4E+02 0.0053 34.3 14.4 111 641-780 47-188 (520)
109 PF13180 PDZ_2: PDZ domain; PD 51.4 5.7 0.00012 35.5 0.4 49 278-336 18-67 (82)
110 PRK08262 hypothetical protein; 51.1 59 0.0013 38.9 9.0 120 144-287 45-192 (486)
111 PRK10199 alkaline phosphatase 50.7 1.8E+02 0.004 33.8 12.4 33 748-780 142-175 (346)
112 KOG0438|consensus 49.9 32 0.00069 38.7 5.8 51 698-798 97-147 (312)
113 PRK10199 alkaline phosphatase 49.3 1.9E+02 0.0042 33.6 12.3 109 162-283 54-175 (346)
114 PRK05111 acetylornithine deace 49.2 2E+02 0.0044 32.9 12.7 119 144-283 6-143 (383)
115 TIGR01886 dipeptidase dipeptid 48.5 1.9E+02 0.0041 34.6 12.7 114 640-781 13-152 (466)
116 PRK07205 hypothetical protein; 48.1 2.2E+02 0.0049 33.6 13.1 116 640-781 11-151 (444)
117 cd00991 PDZ_archaeal_metallopr 47.0 17 0.00037 32.4 2.7 27 777-803 16-43 (79)
118 TIGR01893 aa-his-dipept aminoa 45.8 2.2E+02 0.0048 34.1 12.7 63 144-214 5-70 (477)
119 TIGR01900 dapE-gram_pos succin 45.7 1.4E+02 0.0031 34.4 10.8 34 149-182 2-38 (373)
120 cd00991 PDZ_archaeal_metallopr 45.3 18 0.0004 32.1 2.7 27 280-306 16-43 (79)
121 PRK09290 allantoate amidohydro 44.1 1.8E+02 0.0039 33.9 11.4 106 642-781 9-127 (413)
122 TIGR01893 aa-his-dipept aminoa 43.9 2.6E+02 0.0057 33.5 12.9 64 641-712 5-71 (477)
123 KOG3857|consensus 43.7 25 0.00054 40.4 3.9 41 662-702 86-140 (465)
124 PRK09290 allantoate amidohydro 42.7 2.1E+02 0.0045 33.4 11.6 89 162-284 36-127 (413)
125 KOG0438|consensus 41.3 44 0.00095 37.7 5.3 51 201-301 97-147 (312)
126 cd02907 Macro_Af1521_BAL_like 41.2 4.2E+02 0.0091 27.3 13.4 146 459-622 3-160 (175)
127 KOG1402|consensus 40.5 73 0.0016 36.7 6.9 98 153-270 217-328 (427)
128 COG1921 SelA Selenocysteine sy 40.3 76 0.0017 37.4 7.3 77 256-338 93-196 (395)
129 PRK08737 acetylornithine deace 40.1 2.8E+02 0.006 32.1 12.0 40 641-682 7-50 (364)
130 PRK06446 hypothetical protein; 39.8 3.9E+02 0.0085 31.5 13.4 118 144-285 3-138 (436)
131 PRK12890 allantoate amidohydro 39.6 1.6E+02 0.0036 34.3 10.1 89 659-781 37-128 (414)
132 PRK13381 peptidase T; Provisio 39.6 2.7E+02 0.0059 32.3 11.9 45 163-214 31-76 (404)
133 TIGR03320 ygeY M20/DapE family 39.4 3.3E+02 0.0072 31.5 12.6 109 640-775 13-137 (395)
134 COG0624 ArgE Acetylornithine d 39.0 4.4E+02 0.0094 30.6 13.5 124 142-285 12-152 (409)
135 PRK13381 peptidase T; Provisio 38.5 3.1E+02 0.0066 31.9 12.1 45 660-711 31-76 (404)
136 TIGR03526 selenium_YgeY putati 36.7 7.2E+02 0.016 28.7 17.6 115 143-284 13-143 (395)
137 cd00990 PDZ_glycyl_aminopeptid 36.3 25 0.00055 30.8 2.1 26 778-803 19-45 (80)
138 PF09926 DUF2158: Uncharacteri 35.9 37 0.0008 28.8 2.9 29 788-816 1-34 (53)
139 TIGR01900 dapE-gram_pos succin 35.4 2.7E+02 0.0058 32.2 10.9 110 646-783 2-142 (373)
140 KOG3857|consensus 35.0 41 0.00089 38.8 3.9 41 165-205 86-140 (465)
141 cd00989 PDZ_metalloprotease PD 34.9 21 0.00047 31.0 1.4 25 779-803 20-45 (79)
142 cd00990 PDZ_glycyl_aminopeptid 33.7 30 0.00065 30.3 2.2 27 280-306 18-45 (80)
143 cd00989 PDZ_metalloprotease PD 32.0 26 0.00056 30.5 1.5 26 281-306 19-45 (79)
144 cd00992 PDZ_signaling PDZ doma 31.9 36 0.00079 29.6 2.4 25 779-803 34-59 (82)
145 PRK12890 allantoate amidohydro 31.8 3.1E+02 0.0067 32.0 10.8 90 161-284 36-128 (414)
146 PF10447 EXOSC1: Exosome compo 31.2 22 0.00048 32.7 0.9 12 785-796 66-77 (82)
147 PRK08737 acetylornithine deace 31.1 4.4E+02 0.0095 30.4 11.7 40 144-185 7-50 (364)
148 KOG1402|consensus 30.5 1.3E+02 0.0029 34.7 6.9 95 653-767 220-328 (427)
149 PF10447 EXOSC1: Exosome compo 30.2 25 0.00055 32.3 1.1 13 288-300 66-78 (82)
150 cd00988 PDZ_CTP_protease PDZ d 29.3 49 0.0011 29.2 2.8 28 776-803 18-46 (85)
151 cd00136 PDZ PDZ domain, also c 28.6 43 0.00092 28.4 2.2 28 777-804 19-47 (70)
152 PRK12891 allantoate amidohydro 27.9 3.5E+02 0.0075 31.7 10.3 87 164-284 41-130 (414)
153 TIGR01886 dipeptidase dipeptid 27.8 6.8E+02 0.015 29.9 12.9 114 143-284 13-152 (466)
154 cd00992 PDZ_signaling PDZ doma 27.6 55 0.0012 28.5 2.8 27 280-306 32-59 (82)
155 KOG2276|consensus 27.4 2.3E+02 0.005 33.6 8.3 111 651-781 33-167 (473)
156 cd00136 PDZ PDZ domain, also c 27.3 45 0.00098 28.3 2.1 28 279-306 18-46 (70)
157 TIGR01879 hydantase amidase, h 27.0 4.3E+02 0.0092 30.8 10.8 86 661-780 32-120 (401)
158 cd00988 PDZ_CTP_protease PDZ d 26.7 59 0.0013 28.7 2.8 27 280-306 19-46 (85)
159 cd00987 PDZ_serine_protease PD 26.1 47 0.001 29.5 2.1 25 779-803 32-57 (90)
160 cd00987 PDZ_serine_protease PD 25.0 49 0.0011 29.4 2.0 26 281-306 31-57 (90)
161 TIGR03106 trio_M42_hydro hydro 24.5 2.7E+02 0.0058 32.2 8.3 61 643-711 6-66 (343)
162 TIGR03320 ygeY M20/DapE family 24.0 1.1E+03 0.025 27.0 15.4 102 143-271 13-128 (395)
163 PRK04143 hypothetical protein; 24.0 1.1E+03 0.023 26.6 13.4 130 458-593 83-229 (264)
164 TIGR03106 trio_M42_hydro hydro 23.2 2.8E+02 0.0062 32.0 8.2 62 146-215 6-67 (343)
165 cd03330 Macro_2 Macro domain, 23.0 7.1E+02 0.015 24.2 11.9 118 468-589 6-128 (133)
166 cd02906 Macro_1 Macro domain, 22.6 8E+02 0.017 24.7 11.9 105 468-574 6-127 (147)
167 PF11330 DUF3132: Protein of u 21.9 1.2E+02 0.0025 28.4 3.7 55 270-324 54-109 (124)
168 cd05707 S1_Rrp5_repeat_sc11 S1 21.3 76 0.0017 27.1 2.4 39 771-815 23-67 (68)
169 KOG0884|consensus 21.1 44 0.00095 32.9 0.9 56 872-934 61-119 (161)
170 smart00228 PDZ Domain present 20.2 76 0.0016 27.5 2.2 30 773-802 28-58 (85)
171 TIGR01882 peptidase-T peptidas 20.1 1.1E+03 0.023 27.6 12.3 112 661-781 34-177 (410)
No 1
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.7e-138 Score=1181.61 Aligned_cols=466 Identities=43% Similarity=0.691 Sum_probs=429.7
Q ss_pred CCCEEEEEEecCCCccccccccC--chHHHHHHHHcCCCCCCCCCEEEEcccCCCCccEEEEEEcCCCCCcCCHHHHHHH
Q psy3774 475 KTDCLVVGIFKKNKLSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKI 552 (963)
Q Consensus 475 ~~d~lVv~v~e~~~l~~~~~~ld--~~g~l~~~i~~~~f~gk~ge~~~l~~~~~~~~~~vllvGLG~~~~~~~~~~~r~a 552 (963)
...++++..+ ..+......+| ..+.++.+.+.++|+|+.|+++.++.. ....+|+++||||+ .+ ++.+++|++
T Consensus 13 ~~~~i~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~g~~~~~~~~-~~~~~~~~~vglg~-~~-~~~~~~~~~ 87 (485)
T COG0260 13 LSVTIVVGLF--AELAAEAIALDEKSEGILSWLLKAGEFSGKAGQVLLLPGS-VGSVKRVLLVGLGK-RK-LSEDTLRRA 87 (485)
T ss_pred cceEEEeecc--ccchhhhhhcccchhhhHHHHHHhhcccccCCceEEeecc-CCccceEEEEeecC-Cc-CCHHHHHHH
Confidence 3345555544 33334444556 347788888889999999999999875 22368999999999 77 999999999
Q ss_pred HHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHHHhcCcccCCCccCCCCCCccCceEEEEEecCcchhhHHHH
Q psy3774 553 IQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNA 632 (963)
Q Consensus 553 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~l~~Y~f~~yk~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 632 (963)
.+.+.+.+++....++.+.++.++ ..+.++.+++|+.++.|+|++||+.+++.+.++.++.+.... +..+.+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~Y~f~~yk~~k~~~~~~~~~v~~~~~~---~~~~~~ 159 (485)
T COG0260 88 AGAAARALKKGKAWEVTLLLPELP-----AAEIAAAAVEGFLLGSYRFDRYKSEKKEPDKELPKVTLLVPA---KSAEKA 159 (485)
T ss_pred HHHHHHHhhcCCceEEEEeccccc-----hHHHHHHHHHHHHhcccchhhccccccccccccceEEEeccc---hhhHHH
Confidence 999999999989899998888764 457899999999999999999999886654446677777642 256789
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEc
Q psy3774 633 IIYGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM 712 (963)
Q Consensus 633 ~~~~~~ia~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~ 712 (963)
+++++++++++++||||+|+|||+|||++||++++.+++.++++|+|+|+++|+++|||+||+|||||.+|||||+|+|+
T Consensus 160 ~~~~~ai~~~v~~aRdLvN~P~n~l~P~~la~~a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~ 239 (485)
T COG0260 160 IREGEAIAEGVNLARDLVNTPANILTPEELAERAELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYN 239 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcC
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCC
Q psy3774 713 NGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGD 792 (963)
Q Consensus 713 g~~~~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~ENm~~g~a~kPgD 792 (963)
|+++++++|+|||||||||||||||||+.+|++||+||||||+|+|+|.+++++++|+||++++|+|||||||+||||||
T Consensus 240 g~~~~~~~iaLVGKGitFDsGGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~l~vnv~~vl~~~ENm~~g~A~rPGD 319 (485)
T COG0260 240 GKGKAKKPIALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELKLPVNVVGVLPAVENMPSGNAYRPGD 319 (485)
T ss_pred CCCCCCceEEEEcCceeecCCCcccCCccchhhhhcccchHHHHHHHHHHHHHcCCCceEEEEEeeeccCCCCCCCCCCC
Confidence 99877899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCeEEeecCCCcccceehhhhhhhhhhcCCcEEEEecchhHHHHHhhCCCceEEeeCCccchHHHHHHHHHHHhH
Q psy3774 793 IVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKM 872 (963)
Q Consensus 793 Vits~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~ag~~sn~~~~~~~l~~~l~~ag~~ 872 (963)
|||+||||||||.||||||||||||||+||+++||+.|||+|||||||+||||++++|+||||| +|+++|.+||+.
T Consensus 320 Vits~~GkTVEV~NTDAEGRLVLADaLtYA~~~kp~~iID~ATLTGA~~vALG~~~~g~fs~dd----~La~~l~~As~~ 395 (485)
T COG0260 320 VITSMNGKTVEVLNTDAEGRLVLADALTYAEELKPDLIIDVATLTGAAVVALGNDYTGLFSNDD----ELANQLLAASEE 395 (485)
T ss_pred eEEecCCcEEEEcccCccHHHHHHHHHHHHHHcCCCEEEEehhhHhHHHHHhCCCccccccCCH----HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCcEeeCCCChhhHhhcCCCcccccCCCC-CCcchhHHHHHHHhccCCCCeEEEeeccCCccCC---CCCCCCcchHHH
Q psy3774 873 SGDTAWNMPIEDRYQKQLKSNFADISNIGN-SSADSITAACFLENFTKKYVWAHLDIAGVAWKSG---DKKGATGRPVTL 948 (963)
Q Consensus 873 ~gE~~W~lPl~~~y~~~lkS~vADl~N~g~-~~~GaitAA~FL~~Fv~~~pWaHLDIAG~a~~~~---~~kGaTG~gvr~ 948 (963)
+||++|||||+++|+++|+|+||||+|+|+ |+|||||||+||+||++++||+|||||||||.++ .++||||+||||
T Consensus 396 ~gE~~WrLPl~~~y~~~l~S~~ADl~N~~~~~~gGaitAA~FL~~Fv~~~~WaHlDIAGta~~~~~~~~~~GAtG~~Vrt 475 (485)
T COG0260 396 TGEPLWRLPLHEEYRKQLKSNFADLANIGGGRFGGAITAALFLSEFVENVPWAHLDIAGTAWKSGSPYWPKGATGVGVRT 475 (485)
T ss_pred cCCccccCCCCHHHHhhcCCcchhhhcCCCCCCCcHHHHHHHHHHHcCCCCeEEEEeccccccCCCCcCCCCCeeccHHH
Confidence 999999999999999999999999999998 8999999999999999999999999999999886 599999999999
Q ss_pred HHHHHHhhC
Q psy3774 949 LTYYLMLKS 957 (963)
Q Consensus 949 L~~~l~~~~ 957 (963)
|++||++++
T Consensus 476 L~~~l~~~~ 484 (485)
T COG0260 476 LAQFLLNRA 484 (485)
T ss_pred HHHHHHHhc
Confidence 999999875
No 2
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=100.00 E-value=3.7e-137 Score=1182.97 Aligned_cols=476 Identities=48% Similarity=0.816 Sum_probs=439.5
Q ss_pred eeEeeecccccccccccCCCEEEEEEecCCCccccccccC--chHHHHHHHHcCCCCCCCCCEEEEcccCCCCccEEEEE
Q psy3774 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLV 535 (963)
Q Consensus 458 M~f~i~~~~~~~~~~~~~~d~lVv~v~e~~~l~~~~~~ld--~~g~l~~~i~~~~f~gk~ge~~~l~~~~~~~~~~vllv 535 (963)
|.|++. .......+.|++|||++ ..+.+....+| +.+.++++++..+|+|+.||+..++..++.+.++++++
T Consensus 1 ~~~~~~----~~~~~~~~~~~~vv~~~--~~~~~~~~~ld~~~~g~l~~~~~~~~f~gk~ge~~~l~~~~g~~~~~vi~v 74 (483)
T PRK00913 1 MEFSVK----SGSPEKQKSDCLVVGVP--ERLSPAAEQLDKASDGYLSALLKRGDFKGKAGETLLLHAVPGVLAERVLLV 74 (483)
T ss_pred CeEEEe----ccCcccccCCEEEEEec--cccchhHHHHhhhhhHHHHHHHHhCCCCCCCCCEEEEecCCCCccceEEEE
Confidence 677777 55566668899999998 34455555566 78899999999999999999999998777788999999
Q ss_pred EcCCCCCcCCHHHHHHHHHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHHHhcCcccCCCccCCCCCCccCce
Q psy3774 536 NLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIK 615 (963)
Q Consensus 536 GLG~~~~~~~~~~~r~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~l~~Y~f~~yk~~~~~~~~~l~ 615 (963)
|||+ .++++.+.+|+++++++|.+++.+.+++.+.++.+. .+..++++++|+.++.|+|++||+++++ +..++
T Consensus 75 GlG~-~~~~~~~~~r~a~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~eg~~l~~y~f~~~k~~~~~-~~~~~ 147 (483)
T PRK00913 75 GLGK-EEELDEEQLRKAAGKAARALKKTKVKEAVIFLTELH-----TYWKARAAAEGALLGLYRFDKYKSKKEP-RRPLE 147 (483)
T ss_pred EeCC-cccCCHHHHHHHHHHHHHHhhhcCceEEEEecCccC-----cHHHHHHHHHHHHHcCccccccCCCCcc-cCCcc
Confidence 9999 888999999999999999999988888888776542 2356889999999999999999997442 23467
Q ss_pred EEEEEecCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEee
Q psy3774 616 KIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLS 695 (963)
Q Consensus 616 ~l~l~~~~~~~~~~~~~~~~~~~ia~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~la 695 (963)
++.++... ..+..++.+++++++++++|+||||+|+|||+|||++||++++++++++|++|+|+|+++|+++|||+||+
T Consensus 148 ~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~la 226 (483)
T PRK00913 148 KLVFLVPT-RLTEAEKAIAHGEAIAEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLA 226 (483)
T ss_pred EEEEEcCC-cchHHHHHHHHHHHHHHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEE
Confidence 77776431 12456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCeEEEEEEcCCCCCCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEE
Q psy3774 696 VTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGV 775 (963)
Q Consensus 696 Vg~GS~~~Prli~l~Y~g~~~~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~v 775 (963)
|||||.+|||||+|+|+|++ +||+|||||||||||||||||+.+|++||+||+|||+|+|+|+||++||+||||+|+
T Consensus 227 Vg~GS~~~prli~l~Y~g~~---~~i~LVGKGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lkl~vnV~~v 303 (483)
T PRK00913 227 VGQGSANPPRLIVLEYKGGK---KPIALVGKGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELKLPVNVVGV 303 (483)
T ss_pred EeccCCCCCeEEEEEECCCC---CeEEEEcCceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcCCCceEEEE
Confidence 99999999999999999865 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCCCCCCEEEccCCeEEeecCCCcccceehhhhhhhhhhcCCcEEEEecchhHHHHHhhCCCceEEeeCC
Q psy3774 776 IVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRN 855 (963)
Q Consensus 776 i~~~ENm~~g~a~kPgDVits~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~ag~~sn~ 855 (963)
+|+|||||||+|||||||||+||||||||.||||||||||||+|+||++++|++|||+|||||||++|||++++|+|+||
T Consensus 304 ~~l~ENm~~~~A~rPgDVi~~~~GkTVEV~NTDAEGRLvLADal~ya~~~~p~~iiDiATLTGa~~vALG~~~ag~~sn~ 383 (483)
T PRK00913 304 VAACENMPSGNAYRPGDVLTSMSGKTIEVLNTDAEGRLVLADALTYAERFKPDAIIDVATLTGACVVALGHHTAGLMSNN 383 (483)
T ss_pred EEeeccCCCCCCCCCCCEEEECCCcEEEeecCCcccceeehhHHHHhhhcCCCEEEEecchHHHHHHHcCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhHcCCcEeeCCCChhhHhhcCCCcccccCCCCCCcchhHHHHHHHhccCCCCeEEEeeccCCccC
Q psy3774 856 DEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKS 935 (963)
Q Consensus 856 ~~~~~~l~~~l~~ag~~~gE~~W~lPl~~~y~~~lkS~vADl~N~g~~~~GaitAA~FL~~Fv~~~pWaHLDIAG~a~~~ 935 (963)
| +|+++|++||+++||++|||||+++|+++|||++|||+|+|+|+||+||||+||+|||+++||+|||||||||.+
T Consensus 384 ~----~l~~~~~~a~~~~gE~~WrlPl~~~y~~~l~S~vADl~N~~~~~~ga~~AA~FL~~Fv~~~~WaHlDIAG~a~~~ 459 (483)
T PRK00913 384 D----ELADELLKAGEESGERAWRLPLGDEYQEQLKSPFADMANIGGRPGGAITAACFLSRFVEKYPWAHLDIAGTAWNS 459 (483)
T ss_pred H----HHHHHHHHHHHHHCCceeecCCCHHHHhHCCCchhhhcCCCCCCccccHHHHHHHHhCCCCCEEEEECCCccccC
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C----CCCCCCcchHHHHHHHHH
Q psy3774 936 G----DKKGATGRPVTLLTYYLM 954 (963)
Q Consensus 936 ~----~~kGaTG~gvr~L~~~l~ 954 (963)
+ .|+|+||||||||++|++
T Consensus 460 ~~~~~~~~g~tG~gvrtL~~~l~ 482 (483)
T PRK00913 460 KAWGYNPKGATGRGVRLLVQFLE 482 (483)
T ss_pred CCCCCCCCCceeHHHHHHHHHHh
Confidence 3 379999999999999997
No 3
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=100.00 E-value=5.7e-132 Score=1143.09 Aligned_cols=459 Identities=45% Similarity=0.726 Sum_probs=422.1
Q ss_pred CEEEEEEecC-CCccccccccC--chHHHHHHHHcCCCCCCCCCEEEEcccCCCCccEEEEEEcCCCCCcCCHHHHHHHH
Q psy3774 477 DCLVVGIFKK-NKLSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKII 553 (963)
Q Consensus 477 d~lVv~v~e~-~~l~~~~~~ld--~~g~l~~~i~~~~f~gk~ge~~~l~~~~~~~~~~vllvGLG~~~~~~~~~~~r~a~ 553 (963)
|.+++++++. ..+......+| ..+.++++++..+|+|+.|+++.++...+ +.++++++|||+ ..+++.+.+|+++
T Consensus 2 ~~lv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~g~~~~l~~~~~-~~~~~~~vglg~-~~~~~~~~~r~a~ 79 (468)
T cd00433 2 DGLVLGVFEGEGGLPPAAEKLDAASSGALAALLKASGFKGKAGETLLLPALGG-GAKRVALVGLGK-EEDLDVENLRKAA 79 (468)
T ss_pred cEEEEEEecCccccChHHHhcChhhhHHHHHHHHhcCCCCCCCcEEEEccCCC-CccEEEEEEeCC-chhcCHHHHHHHH
Confidence 6789999875 34555666666 56789999999999999999999987654 678999999999 7789999999999
Q ss_pred HHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHHHhcCcccCCCccCCCCCCccCceEEEEEecCcchhhHHHHH
Q psy3774 554 QSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAI 633 (963)
Q Consensus 554 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~l~~Y~f~~yk~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 633 (963)
+.+++.+++.+..++.+..+.. .+..+++++|+.++.|+|++||++++.. ++ .+.+.. ......++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~l~~y~~~~~k~~~~~~--~~-~~~~~~--~~~~~~~~~~ 147 (468)
T cd00433 80 GAAARALKKLGSKSVAVDLPTL-------AEDAEAAAEGALLGAYRFDRYKSKKKKT--PL-LVVLEL--GNDKAAEAAL 147 (468)
T ss_pred HHHHHHhhhcCceEEEEecCcc-------hHHHHHHHHHHHHhccccccccCCccCC--Cc-eeEEec--ccchhhHHHH
Confidence 9999999998877777655431 3468899999999999999999865432 22 222222 1224567889
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcC
Q psy3774 634 IYGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN 713 (963)
Q Consensus 634 ~~~~~ia~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g 713 (963)
++++++++++++||||+|+|||+|||++||++++++++++|++|+|+|+++|+++|||+||||||||.+|||||+|+|+|
T Consensus 148 ~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y~g 227 (468)
T cd00433 148 ERGEAIAEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKG 227 (468)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCCE
Q psy3774 714 GKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDI 793 (963)
Q Consensus 714 ~~~~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~ENm~~g~a~kPgDV 793 (963)
+++.+++|+|||||||||||||||||+.+|++||+||||||+|+|+|+|+++|++||||++++|+|||||||+|||||||
T Consensus 228 ~~~~~~~i~LVGKGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~~~vnV~~i~~~~EN~is~~A~rPgDV 307 (468)
T cd00433 228 KGASKKPIALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKLPVNVVGVLPLAENMISGNAYRPGDV 307 (468)
T ss_pred CCCCCCcEEEEcCceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcCCCceEEEEEEeeecCCCCCCCCCCCE
Confidence 88778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCeEEeecCCCcccceehhhhhhhhhhcCCcEEEEecchhHHHHHhhCCCceEEeeCCccchHHHHHHHHHHHhHc
Q psy3774 794 VVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMS 873 (963)
Q Consensus 794 its~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~ag~~sn~~~~~~~l~~~l~~ag~~~ 873 (963)
||+||||||||.||||||||||||+|+||++++|+.|||+|||||||++|||++++|+||||| +|+++|++||+.+
T Consensus 308 i~s~~GkTVEI~NTDAEGRLVLaDal~ya~~~~p~~iIDiATLTGA~~vALG~~~ag~~sn~d----~l~~~l~~Ag~~~ 383 (468)
T cd00433 308 ITSRSGKTVEILNTDAEGRLVLADALTYAQEFKPDLIIDIATLTGAAVVALGHDYAGLFTNDD----ELAKQLLAAGEAS 383 (468)
T ss_pred eEeCCCcEEEEecCCcccceeehhHHHHHhhcCCCEEEEecchHHHHHHHcCCCceEEecCCH----HHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCcEeeCCCChhhHhhcCCCcccccCCCCC-CcchhHHHHHHHhccCC-CCeEEEeeccCCccCC---CCCCCCcchHHH
Q psy3774 874 GDTAWNMPIEDRYQKQLKSNFADISNIGNS-SADSITAACFLENFTKK-YVWAHLDIAGVAWKSG---DKKGATGRPVTL 948 (963)
Q Consensus 874 gE~~W~lPl~~~y~~~lkS~vADl~N~g~~-~~GaitAA~FL~~Fv~~-~pWaHLDIAG~a~~~~---~~kGaTG~gvr~ 948 (963)
||++||||||++|+++|||++|||+|+|++ +||+||||+||+|||++ +||+|||||||+|.++ .++|+|||||||
T Consensus 384 gE~~WrlPl~~~y~~~lks~vADl~N~~~~~~~g~~tAA~FL~~Fv~~~~~WaHlDIAG~a~~~~~~~~~~g~TG~gvr~ 463 (468)
T cd00433 384 GERVWRLPLWEEYREQLKSDIADLKNIGGRGPAGSITAALFLKEFVGDGIPWAHLDIAGTAWKSKPGYLPKGATGFGVRL 463 (468)
T ss_pred CCcEeecCCCHHHHHHcCCCchhhhCCCCCCCCcccHHHHHHHHHhCCCCCeEEEECCCcCcCCCCccCCCCceeHHHHH
Confidence 999999999999999999999999999987 99999999999999997 9999999999999874 379999999999
Q ss_pred HHHHH
Q psy3774 949 LTYYL 953 (963)
Q Consensus 949 L~~~l 953 (963)
|+|||
T Consensus 464 L~~~l 468 (468)
T cd00433 464 LVEFL 468 (468)
T ss_pred HHHhC
Confidence 99996
No 4
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=100.00 E-value=2.9e-132 Score=1133.53 Aligned_cols=437 Identities=34% Similarity=0.528 Sum_probs=397.8
Q ss_pred HHHHcCCCCCCCCCEEEEcccCCCCccEEEEEEcCCCCCcCCHHHHHHHHHHHHHHHhhcCCceEEE-ecCCCc------
Q psy3774 504 NILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLL-MLPFNK------ 576 (963)
Q Consensus 504 ~~i~~~~f~gk~ge~~~l~~~~~~~~~~vllvGLG~~~~~~~~~~~r~a~~~a~~~l~~~~~~~~~~-~~~~~~------ 576 (963)
+++...+|+++.|++.+.. .+|+++||||+ .+ +.+.+|++++.++|.+++.+++++.+ .++...
T Consensus 65 ~~~~~~gf~~~~~~~~~~~------~~rvllvGlG~-~~--t~~~~R~a~a~aar~l~~~~~~~i~~~~l~~~~~~~~~~ 135 (569)
T PTZ00412 65 SAPIPFGFRKAAGNRRLDE------ERRELFAGMGA-KP--TVRDYRLAVTAAVREAKKLNASALVLHSLPQDVFSMGDL 135 (569)
T ss_pred cccccccccCCCcceeecC------CceEEEEecCC-CC--CHHHHHHHHHHHHHHHHhcCCeEEEEEeccccccccccc
Confidence 3455689999999987653 57999999999 54 78999999999999999999999987 555320
Q ss_pred --c-cccchHHHHHHHHHHHhcCcccCCCccCCCCCC--------------ccCceEEEEEecCcchhhHHHHHHHHHHH
Q psy3774 577 --I-EKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPI--------------KINIKKIIFALDEKNYIDGKNAIIYGCAI 639 (963)
Q Consensus 577 --~-~~~~~~~~~~a~~eg~~l~~Y~f~~yk~~~~~~--------------~~~l~~l~l~~~~~~~~~~~~~~~~~~~i 639 (963)
. ...+..+.+++++||+.++.|+|++||++++.. ..++.++.++.. ...++++++++++
T Consensus 136 ~~~~~~~~~~~~~~~~aeGa~lg~Y~f~~yKs~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~----~~~~~~~~~g~~i 211 (569)
T PTZ00412 136 FQPPSRLPSHDVVEKTAIFAVTAAYQYDRLKSGAKGGLTRARRAESRAKPPAAPQPPMELVID----SSNAQAIAAGNII 211 (569)
T ss_pred cccccccchHHHHHHHHHHHHhcceechhccCCccccccccccccccccccccCcceEEEecC----chHHHHHHHHHHH
Confidence 0 011234578999999999999999999875431 113456666443 3457899999999
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEE-EeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCCCCCC
Q psy3774 640 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIE-IINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKE 718 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~-V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~~~~~ 718 (963)
++++|+||||+|+|||+|||++||++++++++++|++|+ |+|+++|+++|||+||+|||||.+|||||+|+|+|+++++
T Consensus 212 a~~vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y~g~~~~~ 291 (569)
T PTZ00412 212 GHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEYIGNPRSS 291 (569)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEeCCCCCCC
Confidence 999999999999999999999999999997777999996 9999999999999999999999999999999999987778
Q ss_pred CcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCCEEEccC
Q psy3774 719 APIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMS 798 (963)
Q Consensus 719 ~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~ENm~~g~a~kPgDVits~~ 798 (963)
++|+|||||||||||||||||+.+|++||+||+|||+|+|+|+|+++|++||||+++||+|||||||+|||||||||+||
T Consensus 292 ~~iaLVGKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~LklpvnVv~iiplaENm~sg~A~rPGDVits~n 371 (569)
T PTZ00412 292 AATALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQLPVNVVAAVGLAENAIGPESYHPSSIITSRK 371 (569)
T ss_pred CcEEEEcCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHcCCCeEEEEEEEhhhcCCCCCCCCCCCEeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeecCCCcccceehhhhhhhhhhc-----CCcEEEEecchhHHHHHhhCCCceEEeeCCccchHHHHHHHHHHHhHc
Q psy3774 799 GKTIEVLDTDAEGRLILCDALTYVERF-----KPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMS 873 (963)
Q Consensus 799 GkTVEV~NTDAEGRLvLADaL~Ya~~~-----~p~~iIDiATLTGA~~vALG~~~ag~~sn~~~~~~~l~~~l~~ag~~~ 873 (963)
||||||.||||||||||||+|+||+++ +|+.|||+|||||||++|||++++|+||||| +|+++|++||+.+
T Consensus 372 GkTVEV~NTDAEGRLVLADaL~YA~~~~~~~~~P~~iIDiATLTGA~vvALG~~~aGvfsN~d----~l~~~l~~Ag~~s 447 (569)
T PTZ00412 372 GLTVEVLNTDAEGRLVLADTLTYVQKDAKLDKKPTTIIDIATLTGAIIVGLGSRRAGLFSNDA----HLAQSLMASGRSS 447 (569)
T ss_pred CCEEeecccCchhhhhhHHHHHHHHhhhccccCCcEEEEecccHHHHHHHhCCCceEEecCCH----HHHHHHHHHHHHh
Confidence 999999999999999999999999874 9999999999999999999999999999999 9999999999999
Q ss_pred CCcEeeCCCChhhHhhcCCCcccccCCC-CCCcchhHHHHHHHhccC-CCCeEEEeeccCCccC-C----CCCCCCcchH
Q psy3774 874 GDTAWNMPIEDRYQKQLKSNFADISNIG-NSSADSITAACFLENFTK-KYVWAHLDIAGVAWKS-G----DKKGATGRPV 946 (963)
Q Consensus 874 gE~~W~lPl~~~y~~~lkS~vADl~N~g-~~~~GaitAA~FL~~Fv~-~~pWaHLDIAG~a~~~-~----~~kGaTG~gv 946 (963)
||++||||||++|+++|||++|||+|++ +|.||+||||+||++||+ ++||+|||||||||.+ . .++|+|||||
T Consensus 448 GE~~WrLPL~~ey~~~lkS~vADi~N~~~gr~aGaitAA~FL~~Fv~~~~~WaHLDIAGta~~~~~~~~~~~~GaTG~gV 527 (569)
T PTZ00412 448 GEELWPMPIGDEHKDAMKGGIADLINVASGREAGSCTAAAFLSNFVEPEVKWAHLDIAGVGMGGDKPKGFQPAGAPGFGV 527 (569)
T ss_pred CCceeeCCCCHHHHHHcCCCchhhcCCCCCCCCcccHHHHHHHHhcCCCCCeEEEEcCCccccCCCCCcCCCCCCccHHH
Confidence 9999999999999999999999999997 799999999999999995 7899999999999975 2 3789999999
Q ss_pred HHHHHHHHhhC
Q psy3774 947 TLLTYYLMLKS 957 (963)
Q Consensus 947 r~L~~~l~~~~ 957 (963)
|||++|+++..
T Consensus 528 rtL~e~l~~~~ 538 (569)
T PTZ00412 528 QLLVDYFRHNK 538 (569)
T ss_pred HHHHHHHHhhC
Confidence 99999999865
No 5
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-123 Score=1063.59 Aligned_cols=432 Identities=44% Similarity=0.713 Sum_probs=385.6
Q ss_pred CEEEEEEecCCCcCcccccCC--cHHHHHHHHHcCCCCCCCCCEEEEcccCCCcccEEEEEeccCcc------------c
Q psy3774 6 DCLVVGIFKKNKLSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGASN------------L 71 (963)
Q Consensus 6 d~lVvgV~e~~~l~~~~~~ld--~~g~l~~~l~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlGk~~------------~ 71 (963)
.+++++.+ ..+...+..+| ..+.++.++++.+|+++.|++..++...+ ..+|+++||||+.+ +
T Consensus 15 ~~i~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~-~~~~~~~vglg~~~~~~~~~~~~~~~~ 91 (485)
T COG0260 15 VTIVVGLF--AELAAEAIALDEKSEGILSWLLKAGEFSGKAGQVLLLPGSVG-SVKRVLLVGLGKRKLSEDTLRRAAGAA 91 (485)
T ss_pred eEEEeecc--ccchhhhhhcccchhhhHHHHHHhhcccccCCceEEeeccCC-ccceEEEEeecCCcCCHHHHHHHHHHH
Confidence 34444443 34555566777 45788888888889999999999987522 37899999999975 1
Q ss_pred ccccCcc---c----ccccchhHHHHHHHHHHHhccccccccccCCCCcccCccEEEEEecCCChhhHHHHHHHHHHHHH
Q psy3774 72 LLMLPFN---K----IEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISK 144 (963)
Q Consensus 72 ~~~l~~~---~----~~~~d~~~~~~~~~eg~~l~~Y~f~~~ks~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ia~ 144 (963)
.-.+... . .+.....+.++.+++|+.++.|+|++||+++++++.+..++.+..+. ...++.+++++++++
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Y~f~~yk~~k~~~~~~~~~v~~~~~~---~~~~~~~~~~~ai~~ 168 (485)
T COG0260 92 ARALKKGKAWEVTLLLPELPAAEIAAAAVEGFLLGSYRFDRYKSEKKEPDKELPKVTLLVPA---KSAEKAIREGEAIAE 168 (485)
T ss_pred HHHhhcCCceEEEEeccccchHHHHHHHHHHHHhcccchhhccccccccccccceEEEeccc---hhhHHHHHHHHHHHH
Confidence 1111110 0 11111347889999999999999999999875554446777777642 245788999999999
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCCCCCcE
Q psy3774 145 GIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPI 224 (963)
Q Consensus 145 ~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~~~~~i 224 (963)
++++||||+|+|||+|||++|+++++.+++.++++|+|+++++|+++|||+||+|||||.+|||||+|+|+|.+..+++|
T Consensus 169 ~v~~aRdLvN~P~n~l~P~~la~~a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~g~~~~~~~i 248 (485)
T COG0260 169 GVNLARDLVNTPANILTPEELAERAELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGKAKKPI 248 (485)
T ss_pred HHHHHHHHhhCCcccCCHHHHHHHHHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcCCCCCCCceE
Confidence 99999999999999999999999988888888899999999999999999999999999999999999999998777899
Q ss_pred EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeecCCCCCCCCCCcEEEecCceE
Q psy3774 225 VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKT 304 (963)
Q Consensus 225 ~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN~~~~~a~~pgDVi~~~~G~t 304 (963)
+|||||||||||||||||+.+|.+||+||||||+|+|+|.+++++++|+||++++|+|||||||+|||||||||+|||||
T Consensus 249 aLVGKGitFDsGGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~l~vnv~~vl~~~ENm~~g~A~rPGDVits~~GkT 328 (485)
T COG0260 249 ALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELKLPVNVVGVLPAVENMPSGNAYRPGDVITSMNGKT 328 (485)
T ss_pred EEEcCceeecCCCcccCCccchhhhhcccchHHHHHHHHHHHHHcCCCceEEEEEeeeccCCCCCCCCCCCeEEecCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcccceeehhhhhhhhhcCCcEEEEeccchhhhhhhcCCCceEEeeCChhchHHHHHHHHHHHhHcCCceeecC
Q psy3774 305 IEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMP 384 (963)
Q Consensus 305 vEi~NTDAEGRLvLADal~ya~~~~p~~iiD~ATLTGa~~~AlG~~~~g~~~n~~~~~~~l~~~l~~a~~~~ge~~W~lP 384 (963)
|||.||||||||||||+|+||+++||+.|||+|||||||+||||++|+|+||||| +|+++|.+||+++||++||||
T Consensus 329 VEV~NTDAEGRLVLADaLtYA~~~kp~~iID~ATLTGA~~vALG~~~~g~fs~dd----~La~~l~~As~~~gE~~WrLP 404 (485)
T COG0260 329 VEVLNTDAEGRLVLADALTYAEELKPDLIIDVATLTGAAVVALGNDYTGLFSNDD----ELANQLLAASEETGEPLWRLP 404 (485)
T ss_pred EEEcccCccHHHHHHHHHHHHHHcCCCEEEEehhhHhHHHHHhCCCccccccCCH----HHHHHHHHHHHHcCCccccCC
Confidence 9999999999999999999999889999999999999999999999999999999 999999999999999999999
Q ss_pred CchhhHhhcCCCccccccCCC-CCccchHHHHHHHhccCCCCeEEEeeccCcccCC---CCCCchhh
Q psy3774 385 IEDRYQKQLKSNFADISNIGN-SSADSITAACFLENFTKKYVWAHLDIAGVAWKSG---DKKGATVE 447 (963)
Q Consensus 385 l~~~y~~~l~s~~ADl~N~~~-~~~g~~~AA~FL~~Fv~~~~w~HlDiAG~a~~~~---~~~g~~~~ 447 (963)
|+++|+++|+|++|||+|+++ |+|||||||+||+||++++||+|||||||+|.++ .++|+|+.
T Consensus 405 l~~~y~~~l~S~~ADl~N~~~~~~gGaitAA~FL~~Fv~~~~WaHlDIAGta~~~~~~~~~~GAtG~ 471 (485)
T COG0260 405 LHEEYRKQLKSNFADLANIGGGRFGGAITAALFLSEFVENVPWAHLDIAGTAWKSGSPYWPKGATGV 471 (485)
T ss_pred CCHHHHhhcCCcchhhhcCCCCCCCcHHHHHHHHHHHcCCCCeEEEEeccccccCCCCcCCCCCeec
Confidence 999999999999999999998 8999999999999999999999999999999987 67877754
No 6
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=100.00 E-value=6.9e-123 Score=1064.93 Aligned_cols=433 Identities=50% Similarity=0.843 Sum_probs=390.1
Q ss_pred CCCEEEEEEecCCCcCcccccCC--cHHHHHHHHHcCCCCCCCCCEEEEcccCCCcccEEEEEeccCcc-----------
Q psy3774 4 KTDCLVVGIFKKNKLSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGASN----------- 70 (963)
Q Consensus 4 ~ad~lVvgV~e~~~l~~~~~~ld--~~g~l~~~l~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlGk~~----------- 70 (963)
++|+||||++ ..+....+.+| +.+.+.++++..+|+|+.|++..++..++...++++++|||+.+
T Consensus 14 ~~~~~vv~~~--~~~~~~~~~ld~~~~g~l~~~~~~~~f~gk~ge~~~l~~~~g~~~~~vi~vGlG~~~~~~~~~~r~a~ 91 (483)
T PRK00913 14 KSDCLVVGVP--ERLSPAAEQLDKASDGYLSALLKRGDFKGKAGETLLLHAVPGVLAERVLLVGLGKEEELDEEQLRKAA 91 (483)
T ss_pred cCCEEEEEec--cccchhHHHHhhhhhHHHHHHHHhCCCCCCCCCEEEEecCCCCccceEEEEEeCCcccCCHHHHHHHH
Confidence 5799999998 35666666777 88999999999999999999999998777788999999999853
Q ss_pred --cccccCc-----cc--ccccchhHHHHHHHHHHHhccccccccccCCCCcccCccEEEEEecCCChhhHHHHHHHHHH
Q psy3774 71 --LLLMLPF-----NK--IEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCA 141 (963)
Q Consensus 71 --~~~~l~~-----~~--~~~~d~~~~~~~~~eg~~l~~Y~f~~~ks~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 141 (963)
+.-.+.. +. ++........+++++|+.++.|+|++||++++ +...++++.++.... ....++.++++++
T Consensus 92 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eg~~l~~y~f~~~k~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 169 (483)
T PRK00913 92 GKAARALKKTKVKEAVIFLTELHTYWKARAAAEGALLGLYRFDKYKSKKE-PRRPLEKLVFLVPTR-LTEAEKAIAHGEA 169 (483)
T ss_pred HHHHHHhhhcCceEEEEecCccCcHHHHHHHHHHHHHcCccccccCCCCc-ccCCccEEEEEcCCc-chHHHHHHHHHHH
Confidence 0001111 11 11111234678999999999999999999743 223467777764321 2356789999999
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCCCC
Q psy3774 142 ISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKE 221 (963)
Q Consensus 142 ia~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~~~ 221 (963)
+++++++||||+|+|||+|||+.||++++++++++|++|+|++++||+++|||+||+|||||.+|||||+|+|+|.+
T Consensus 170 ~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~prli~l~Y~g~~--- 246 (483)
T PRK00913 170 IAEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVLEYKGGK--- 246 (483)
T ss_pred HHHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCCCCeEEEEEECCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CcEEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeecCCCCCCCCCCcEEEecC
Q psy3774 222 APIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMS 301 (963)
Q Consensus 222 ~~i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN~~~~~a~~pgDVi~~~~ 301 (963)
++|+|||||||||||||||||+.+|++||+||+|||+|+|+|+|+++||+||||++++|+|||||||+|||||||||+||
T Consensus 247 ~~i~LVGKGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lkl~vnV~~v~~l~ENm~~~~A~rPgDVi~~~~ 326 (483)
T PRK00913 247 KPIALVGKGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELKLPVNVVGVVAACENMPSGNAYRPGDVLTSMS 326 (483)
T ss_pred CeEEEEcCceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcCCCceEEEEEEeeccCCCCCCCCCCCEEEECC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCcccceeehhhhhhhhhcCCcEEEEeccchhhhhhhcCCCceEEeeCChhchHHHHHHHHHHHhHcCCcee
Q psy3774 302 GKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAW 381 (963)
Q Consensus 302 G~tvEi~NTDAEGRLvLADal~ya~~~~p~~iiD~ATLTGa~~~AlG~~~~g~~~n~~~~~~~l~~~l~~a~~~~ge~~W 381 (963)
||||||.||||||||||||+|+||++++|++|||+|||||||++|||++++|+|+||+ +|++++++||+++||++|
T Consensus 327 GkTVEV~NTDAEGRLvLADal~ya~~~~p~~iiDiATLTGa~~vALG~~~ag~~sn~~----~l~~~~~~a~~~~gE~~W 402 (483)
T PRK00913 327 GKTIEVLNTDAEGRLVLADALTYAERFKPDAIIDVATLTGACVVALGHHTAGLMSNND----ELADELLKAGEESGERAW 402 (483)
T ss_pred CcEEEeecCCcccceeehhHHHHhhhcCCCEEEEecchHHHHHHHcCCCcEEEEeCCH----HHHHHHHHHHHHHCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ecCCchhhHhhcCCCccccccCCCCCccchHHHHHHHhccCCCCeEEEeeccCcccCC----CCCCchhh
Q psy3774 382 NMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKSG----DKKGATVE 447 (963)
Q Consensus 382 ~lPl~~~y~~~l~s~~ADl~N~~~~~~g~~~AA~FL~~Fv~~~~w~HlDiAG~a~~~~----~~~g~~~~ 447 (963)
||||+++|+++|+|++|||+|++++.||+|+||+||+|||+++||+|||||||+|.++ .++|+|+.
T Consensus 403 rlPl~~~y~~~l~S~vADl~N~~~~~~ga~~AA~FL~~Fv~~~~WaHlDIAG~a~~~~~~~~~~~g~tG~ 472 (483)
T PRK00913 403 RLPLGDEYQEQLKSPFADMANIGGRPGGAITAACFLSRFVEKYPWAHLDIAGTAWNSKAWGYNPKGATGR 472 (483)
T ss_pred ecCCCHHHHhHCCCchhhhcCCCCCCccccHHHHHHHHhCCCCCEEEEECCCccccCCCCCCCCCCceeH
Confidence 9999999999999999999999989999999999999999999999999999999862 35666654
No 7
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=100.00 E-value=2.5e-120 Score=1046.44 Aligned_cols=434 Identities=45% Similarity=0.723 Sum_probs=387.3
Q ss_pred CCEEEEEEecC-CCcCcccccCC--cHHHHHHHHHcCCCCCCCCCEEEEcccCCCcccEEEEEeccCcc-----------
Q psy3774 5 TDCLVVGIFKK-NKLSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGASN----------- 70 (963)
Q Consensus 5 ad~lVvgV~e~-~~l~~~~~~ld--~~g~l~~~l~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlGk~~----------- 70 (963)
.|++++++++. +.+....+.+| ..+.+..+++..+|+++.|+...++...+ ..++++++|+|+.+
T Consensus 1 ~~~lv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~g~~~~l~~~~~-~~~~~~~vglg~~~~~~~~~~r~a~ 79 (468)
T cd00433 1 ADGLVLGVFEGEGGLPPAAEKLDAASSGALAALLKASGFKGKAGETLLLPALGG-GAKRVALVGLGKEEDLDVENLRKAA 79 (468)
T ss_pred CcEEEEEEecCccccChHHHhcChhhhHHHHHHHHhcCCCCCCCcEEEEccCCC-CccEEEEEEeCCchhcCHHHHHHHH
Confidence 37899999975 45666677787 67899999999999999999999987654 67899999999863
Q ss_pred --ccccc-----CcccccccchhHHHHHHHHHHHhccccccccccCCCCcccCccEEEEEecCCChhhHHHHHHHHHHHH
Q psy3774 71 --LLLML-----PFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAIS 143 (963)
Q Consensus 71 --~~~~l-----~~~~~~~~d~~~~~~~~~eg~~l~~Y~f~~~ks~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ia 143 (963)
+.-.+ ..+.+.........+++++|+.++.|+|++||+++++. ++ ...+.. .+....++.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~y~~~~~k~~~~~~--~~-~~~~~~--~~~~~~~~~~~~~~~~a 154 (468)
T cd00433 80 GAAARALKKLGSKSVAVDLPTLAEDAEAAAEGALLGAYRFDRYKSKKKKT--PL-LVVLEL--GNDKAAEAALERGEAIA 154 (468)
T ss_pred HHHHHHhhhcCceEEEEecCcchHHHHHHHHHHHHhccccccccCCccCC--Cc-eeEEec--ccchhhHHHHHHHHHHH
Confidence 11111 11122211113467899999999999999999864432 22 222222 12234578899999999
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCCCCCc
Q psy3774 144 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAP 223 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~~~~~ 223 (963)
+++++||||+|+|||+|||++||++++++++++|++|+|++++||+++|||+||||||||.+|||||+|+|+|.++.+++
T Consensus 155 ~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y~g~~~~~~~ 234 (468)
T cd00433 155 EGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGASKKP 234 (468)
T ss_pred HHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777799
Q ss_pred EEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeecCCCCCCCCCCcEEEecCce
Q psy3774 224 IVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGK 303 (963)
Q Consensus 224 i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN~~~~~a~~pgDVi~~~~G~ 303 (963)
|+|||||||||||||||||+.+|.+||+||||||+|+|+|+++++|++||||++++|+|||||||+|||||||||+||||
T Consensus 235 i~LVGKGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~~~vnV~~i~~~~EN~is~~A~rPgDVi~s~~Gk 314 (468)
T cd00433 235 IALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKLPVNVVGVLPLAENMISGNAYRPGDVITSRSGK 314 (468)
T ss_pred EEEEcCceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcCCCceEEEEEEeeecCCCCCCCCCCCEeEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCcccceeehhhhhhhhhcCCcEEEEeccchhhhhhhcCCCceEEeeCChhchHHHHHHHHHHHhHcCCceeec
Q psy3774 304 TIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNM 383 (963)
Q Consensus 304 tvEi~NTDAEGRLvLADal~ya~~~~p~~iiD~ATLTGa~~~AlG~~~~g~~~n~~~~~~~l~~~l~~a~~~~ge~~W~l 383 (963)
||||.||||||||||||+|+||++++|+.|||+|||||||++|||++++|+||||| +|+++|++||+++||++|||
T Consensus 315 TVEI~NTDAEGRLVLaDal~ya~~~~p~~iIDiATLTGA~~vALG~~~ag~~sn~d----~l~~~l~~Ag~~~gE~~Wrl 390 (468)
T cd00433 315 TVEILNTDAEGRLVLADALTYAQEFKPDLIIDIATLTGAAVVALGHDYAGLFTNDD----ELAKQLLAAGEASGERVWRL 390 (468)
T ss_pred EEEEecCCcccceeehhHHHHHhhcCCCEEEEecchHHHHHHHcCCCceEEecCCH----HHHHHHHHHHHHhCCcEeec
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCchhhHhhcCCCccccccCCCC-CccchHHHHHHHhccCC-CCeEEEeeccCcccCC---CCCCchhhh
Q psy3774 384 PIEDRYQKQLKSNFADISNIGNS-SADSITAACFLENFTKK-YVWAHLDIAGVAWKSG---DKKGATVEL 448 (963)
Q Consensus 384 Pl~~~y~~~l~s~~ADl~N~~~~-~~g~~~AA~FL~~Fv~~-~~w~HlDiAG~a~~~~---~~~g~~~~l 448 (963)
||+++|+++|+|++|||+|++++ .||+||||+||++||++ .||+|||||||+|.+. .++|+|+..
T Consensus 391 Pl~~~y~~~lks~vADl~N~~~~~~~g~~tAA~FL~~Fv~~~~~WaHlDIAG~a~~~~~~~~~~g~TG~g 460 (468)
T cd00433 391 PLWEEYREQLKSDIADLKNIGGRGPAGSITAALFLKEFVGDGIPWAHLDIAGTAWKSKPGYLPKGATGFG 460 (468)
T ss_pred CCCHHHHHHcCCCchhhhCCCCCCCCcccHHHHHHHHHhCCCCCeEEEECCCcCcCCCCccCCCCceeHH
Confidence 99999999999999999999976 89999999999999986 9999999999999874 356666543
No 8
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=100.00 E-value=2.6e-118 Score=1019.02 Aligned_cols=401 Identities=35% Similarity=0.537 Sum_probs=355.4
Q ss_pred HHHHcCCCCCCCCCEEEEcccCCCcccEEEEEeccCcc-----------c----------ccccCccccc----------
Q psy3774 33 NILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGASN-----------L----------LLMLPFNKIE---------- 81 (963)
Q Consensus 33 ~~l~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlGk~~-----------~----------~~~l~~~~~~---------- 81 (963)
+++...+|+++.|++.+.. .+|+++||||+.. + .+.+..+...
T Consensus 65 ~~~~~~gf~~~~~~~~~~~------~~rvllvGlG~~~t~~~~R~a~a~aar~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 138 (569)
T PTZ00412 65 SAPIPFGFRKAAGNRRLDE------ERRELFAGMGAKPTVRDYRLAVTAAVREAKKLNASALVLHSLPQDVFSMGDLFQP 138 (569)
T ss_pred cccccccccCCCcceeecC------CceEEEEecCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecccccccccccccc
Confidence 3455689999999887643 4799999999864 0 0011001100
Q ss_pred --ccchhHHHHHHHHHHHhccccccccccCCCCc--------------ccCccEEEEEecCCChhhHHHHHHHHHHHHHH
Q psy3774 82 --KYNLSCLIIRTIIIISDNLYRSDAQKSKKKPI--------------KINIKKIIFALDEKNYIDGKNAIIYGCAISKG 145 (963)
Q Consensus 82 --~~d~~~~~~~~~eg~~l~~Y~f~~~ks~~~~~--------------~~~~~~l~l~~~~~~~~~~~~~~~~~~~ia~~ 145 (963)
..+..+.++++++|+.++.|+|++|||+++.+ ...+.++.++.+ ...++.++++++++++
T Consensus 139 ~~~~~~~~~~~~~aeGa~lg~Y~f~~yKs~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~----~~~~~~~~~g~~ia~~ 214 (569)
T PTZ00412 139 PSRLPSHDVVEKTAIFAVTAAYQYDRLKSGAKGGLTRARRAESRAKPPAAPQPPMELVID----SSNAQAIAAGNIIGHC 214 (569)
T ss_pred ccccchHHHHHHHHHHHHhcceechhccCCccccccccccccccccccccCcceEEEecC----chHHHHHHHHHHHHHH
Confidence 01223468999999999999999999875431 123556666443 2347889999999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEE-EeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCCCCCcE
Q psy3774 146 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIE-IINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPI 224 (963)
Q Consensus 146 ~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~-v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~~~~~i 224 (963)
+|+||||+|+|||+|||++|+++++++++++|++|+ |++++||+++|||+||+|||||.+|||||+|+|+|+++.+++|
T Consensus 215 vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y~g~~~~~~~i 294 (569)
T PTZ00412 215 VNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEYIGNPRSSAAT 294 (569)
T ss_pred HHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEeCCCCCCCCcE
Confidence 999999999999999999999999997778999996 9999999999999999999999999999999999987777899
Q ss_pred EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeecCCCCCCCCCCcEEEecCceE
Q psy3774 225 VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKT 304 (963)
Q Consensus 225 ~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN~~~~~a~~pgDVi~~~~G~t 304 (963)
+|||||||||||||||||+.+|++||+||+|||+|+|+|+|+++|++|+||++++|+|||||||+|||||||||+|||||
T Consensus 295 aLVGKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~LklpvnVv~iiplaENm~sg~A~rPGDVits~nGkT 374 (569)
T PTZ00412 295 ALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQLPVNVVAAVGLAENAIGPESYHPSSIITSRKGLT 374 (569)
T ss_pred EEEcCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHcCCCeEEEEEEEhhhcCCCCCCCCCCCEeEecCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcccceeehhhhhhhhhc-----CCcEEEEeccchhhhhhhcCCCceEEeeCChhchHHHHHHHHHHHhHcCCc
Q psy3774 305 IEVLDTDAEGRLILCDALTYVERF-----KPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDT 379 (963)
Q Consensus 305 vEi~NTDAEGRLvLADal~ya~~~-----~p~~iiD~ATLTGa~~~AlG~~~~g~~~n~~~~~~~l~~~l~~a~~~~ge~ 379 (963)
|||.||||||||||||+|+||+++ +|+.|||+|||||||++|||++++|+||||+ +|+++|++||+++||+
T Consensus 375 VEV~NTDAEGRLVLADaL~YA~~~~~~~~~P~~iIDiATLTGA~vvALG~~~aGvfsN~d----~l~~~l~~Ag~~sGE~ 450 (569)
T PTZ00412 375 VEVLNTDAEGRLVLADTLTYVQKDAKLDKKPTTIIDIATLTGAIIVGLGSRRAGLFSNDA----HLAQSLMASGRSSGEE 450 (569)
T ss_pred EeecccCchhhhhhHHHHHHHHhhhccccCCcEEEEecccHHHHHHHhCCCceEEecCCH----HHHHHHHHHHHHhCCc
Confidence 999999999999999999999874 9999999999999999999999999999999 9999999999999999
Q ss_pred eeecCCchhhHhhcCCCccccccCC-CCCccchHHHHHHHhccC-CCCeEEEeeccCcccCC-----CCCCchhh
Q psy3774 380 AWNMPIEDRYQKQLKSNFADISNIG-NSSADSITAACFLENFTK-KYVWAHLDIAGVAWKSG-----DKKGATVE 447 (963)
Q Consensus 380 ~W~lPl~~~y~~~l~s~~ADl~N~~-~~~~g~~~AA~FL~~Fv~-~~~w~HlDiAG~a~~~~-----~~~g~~~~ 447 (963)
+|||||+++|+++|+|++|||+|++ +|.||+||||+||++||+ ++||+|||||||+|.+. .++|+|+.
T Consensus 451 ~WrLPL~~ey~~~lkS~vADi~N~~~gr~aGaitAA~FL~~Fv~~~~~WaHLDIAGta~~~~~~~~~~~~GaTG~ 525 (569)
T PTZ00412 451 LWPMPIGDEHKDAMKGGIADLINVASGREAGSCTAAAFLSNFVEPEVKWAHLDIAGVGMGGDKPKGFQPAGAPGF 525 (569)
T ss_pred eeeCCCCHHHHHHcCCCchhhcCCCCCCCCcccHHHHHHHHhcCCCCCeEEEEcCCccccCCCCCcCCCCCCccH
Confidence 9999999999999999999999997 688999999999999995 79999999999999753 24566644
No 9
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=100.00 E-value=5.8e-118 Score=970.24 Aligned_cols=305 Identities=48% Similarity=0.856 Sum_probs=277.7
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCCC-CCCCcE
Q psy3774 643 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPI 721 (963)
Q Consensus 643 ~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~~-~~~~~i 721 (963)
||+||||+|+|||+|||++||++++++++++|++|+|+|+++|+++|||+||+|||||.+|||||+|+|+|++ +.+++|
T Consensus 1 vn~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i 80 (311)
T PF00883_consen 1 VNLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPI 80 (311)
T ss_dssp HHHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEE
T ss_pred ChHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998 678899
Q ss_pred EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCCEEEccCCeE
Q psy3774 722 VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKT 801 (963)
Q Consensus 722 ~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~ENm~~g~a~kPgDVits~~GkT 801 (963)
+|||||||||||||||||+.+|++||+||+|||+|+|+|+++++||+||||+++||+|||||||+|||||||||+|||||
T Consensus 81 ~LVGKGiTFDtGG~~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~lk~~vnV~~~l~~~EN~i~~~a~~pgDVi~s~~GkT 160 (311)
T PF00883_consen 81 ALVGKGITFDTGGLSLKPSGGMEGMKYDMGGAAAVLGAMRAIAKLKLPVNVVAVLPLAENMISGNAYRPGDVITSMNGKT 160 (311)
T ss_dssp EEEEEEEEEEE-TTSSSCSTTGGGGGGGGHHHHHHHHHHHHHHHCT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-E
T ss_pred EEEcceEEEecCCccCCCCcchhhcccCcchHHHHHHHHHHHHHcCCCceEEEEEEcccccCCCCCCCCCCEEEeCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCcccceehhhhhhhhhhcCCcEEEEecchhHHHHHhhCCCceEEeeCCccchHHHHHHHHHHHhHcCCcEeeCC
Q psy3774 802 IEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMP 881 (963)
Q Consensus 802 VEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~ag~~sn~~~~~~~l~~~l~~ag~~~gE~~W~lP 881 (963)
|||.||||||||||||+|+||++++|+.|||+|||||||++|||++++|+||||+ +|+++|++||+++||++||||
T Consensus 161 VEI~NTDAEGRLvLADaL~ya~~~~p~~iiDiATLTGa~~~ALG~~~ag~~sn~~----~l~~~l~~ag~~~gE~~WrlP 236 (311)
T PF00883_consen 161 VEIGNTDAEGRLVLADALTYAQEYKPDLIIDIATLTGACVVALGSDYAGVFSNDD----ELAKQLQEAGERSGERVWRLP 236 (311)
T ss_dssp EEES-TTGHHHHHHHHHHHHHHGGT-SEEEEEEE--HHHHHHHTTTSEEEEESSH----HHHHHHHHHHHHHT--EEEE-
T ss_pred EEEEeeCcccceeehhHHHHHHhhCCceEEeehhhhhHHHeeECCceeeeecCCH----HHHHHHHHHHHhcCCceeccc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CChhhHhhcCCCcccccCCCCCC-cchhHHHHHHHhccCC--CCeEEEeeccCCccCC--CCCCCCcchHHHHHH
Q psy3774 882 IEDRYQKQLKSNFADISNIGNSS-ADSITAACFLENFTKK--YVWAHLDIAGVAWKSG--DKKGATGRPVTLLTY 951 (963)
Q Consensus 882 l~~~y~~~lkS~vADl~N~g~~~-~GaitAA~FL~~Fv~~--~pWaHLDIAG~a~~~~--~~kGaTG~gvr~L~~ 951 (963)
||++|+++|||++|||+|+|++. +|+|+||+||++|+++ +||+|||||||+|.++ .++|+||||||||+|
T Consensus 237 l~~~y~~~lks~~ADl~N~~~~~~~g~~~AA~FL~~Fv~~~~~~w~HlDIAg~a~~~~~~~~~gaTG~gvr~L~e 311 (311)
T PF00883_consen 237 LWEEYREQLKSDIADLKNSGGRRGAGAITAAAFLKEFVEDGDVPWAHLDIAGTAWSDKDGPPKGATGFGVRTLVE 311 (311)
T ss_dssp --HHHGGGGC-SSSSEESSSSSSTTHHHHHHHHHHTTCTTCTSEEEEEEETTTSEETSTTTTSEE-STTHHHHHH
T ss_pred ccHHHHHhcccccchhhccCCCCCCCccHHHHHHHHhCCCCCCceEEEEecCccccCCCCCCCCeeccchHhhcC
Confidence 99999999999999999999876 5999999999999998 8999999999999875 379999999999987
No 10
>PRK05015 aminopeptidase B; Provisional
Probab=100.00 E-value=1.7e-115 Score=975.40 Aligned_cols=373 Identities=34% Similarity=0.467 Sum_probs=334.0
Q ss_pred HHHHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHHHhcCcccC-CCccCCCCCCccCceEEEEEecCcchhhH
Q psy3774 551 KIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRS-DAQKSKKKPIKINIKKIIFALDEKNYIDG 629 (963)
Q Consensus 551 ~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~l~~Y~f-~~yk~~~~~~~~~l~~l~l~~~~~~~~~~ 629 (963)
..+++|+|+|..+|++++.+.-..-. ++ .+|-| ..|++.|.. .+|.+... .
T Consensus 38 ~~iq~a~r~~~~qg~~~~~l~g~~w~---------~~--------~~waf~qg~~~~k~~-----~~~~~~~l------~ 89 (424)
T PRK05015 38 GLIQRAARKLDGQGIKHVALAGEGWD---------LE--------RCWAFWQGFRTPKGT-----RKVEWPDL------D 89 (424)
T ss_pred HHHHHHHHHhhcCCcceEEEccCCCC---------HH--------HhHHHHhccccCCCC-----ceEEcCCC------C
Confidence 46778899999999999987654321 11 11222 246665543 23443221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhC---CCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeE
Q psy3774 630 KNAIIYGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDY---KMDIEIINREQMQRLKMGSLLSVTHGSSEPPKL 706 (963)
Q Consensus 630 ~~~~~~~~~ia~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~---g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prl 706 (963)
++..++..+.++++++||||+|+|||+|||+.||++|++++++. +++|+|+++++|+++||++|++|||||.+||||
T Consensus 90 ~~~~~~l~~~~~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~pP~l 169 (424)
T PRK05015 90 DAQQQELDARLKIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSERPPVL 169 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCCCCEE
Confidence 23356788899999999999999999999999999999999886 699999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCcE--EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy3774 707 IIIKYMNGKFKEAPI--VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLS 784 (963)
Q Consensus 707 i~l~Y~g~~~~~~~i--~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~ENm~~ 784 (963)
|+|+|+|.++.++|+ +|||||||||||||||||+.+|+.||+||+|||+|+|+|.+++++++|+||++++|+||||||
T Consensus 170 v~L~Y~~~g~~~~~v~~aLVGKGITFDSGG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~~l~~nV~~il~~aENmis 249 (424)
T PRK05015 170 LALDYNPTGDPDAPVYACLVGKGITFDSGGYSIKPSAGMDSMKSDMGGAATVTGALALAITRGLNKRVKLFLCCAENLIS 249 (424)
T ss_pred EEEEecCCCCCCCCeeEEEecCceEecCCCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhcCCCceEEEEEEecccCCC
Confidence 999999876656676 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEccCCeEEeecCCCcccceehhhhhhhhhhcCCcEEEEecchhHHHHHhhCCCceEEeeCCccchHHHHH
Q psy3774 785 GNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVL 864 (963)
Q Consensus 785 g~a~kPgDVits~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~ag~~sn~~~~~~~l~~ 864 (963)
|+|||||||||+||||||||.||||||||||||+|+||++++|+.|||+|||||||++|||++|+|+||||| +|++
T Consensus 250 g~A~kpgDVIt~~nGkTVEI~NTDAEGRLVLAD~L~yA~~~~p~~IID~ATLTGA~~~ALG~~~agvfsndd----~l~~ 325 (424)
T PRK05015 250 GNAFKLGDIITYRNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAKTALGNDYHALFSFDD----ELAQ 325 (424)
T ss_pred CCCCCCCCEEEecCCcEEeeeccCccceeeehhHHHHhhhcCCCEEEEeeccchhhHhhhCCCceeeecCCH----HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhHcCCcEeeCCCChhhHhhcCCCcccccCCC--CCCcchhHHHHHHHhccCCC--CeEEEeeccCCccCC---C
Q psy3774 865 DLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIG--NSSADSITAACFLENFTKKY--VWAHLDIAGVAWKSG---D 937 (963)
Q Consensus 865 ~l~~ag~~~gE~~W~lPl~~~y~~~lkS~vADl~N~g--~~~~GaitAA~FL~~Fv~~~--pWaHLDIAG~a~~~~---~ 937 (963)
++++||+.+||++|||||+++|+++++|++|||+|++ ++.||+||||+||++||++. ||+|||||||.+... .
T Consensus 326 ~l~~a~~~~gE~~WrLPl~~~~~~~l~S~~ADl~N~~~~~~~aGa~tAA~FL~~Fv~~~~~~W~HlDiAgt~~~~~~~~~ 405 (424)
T PRK05015 326 RLLASAAQENEPFWRLPLAEFHRSQLPSNFADLANSGSGAGPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKSAVDQW 405 (424)
T ss_pred HHHHHHHHhCCceeecCCCHHHHHhcCCCcchhcCCCCCCCCCCchHHHHHHHHHcCCCCCceEEEEccCcccCCCCCCC
Confidence 9999999999999999999999999999999999997 37899999999999999874 599999999944322 3
Q ss_pred CCCCCcchHHHHHHHHHh
Q psy3774 938 KKGATGRPVTLLTYYLML 955 (963)
Q Consensus 938 ~kGaTG~gvr~L~~~l~~ 955 (963)
++|+||||||||++||++
T Consensus 406 ~~GaTG~gVrtL~~~l~~ 423 (424)
T PRK05015 406 AAGATGLGVRTIANLLLA 423 (424)
T ss_pred CCCcccHHHHHHHHHHhh
Confidence 799999999999999975
No 11
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=100.00 E-value=5.8e-110 Score=907.48 Aligned_cols=299 Identities=48% Similarity=0.861 Sum_probs=268.8
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCC-CCCCcE
Q psy3774 146 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGK-FKEAPI 224 (963)
Q Consensus 146 ~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~-~~~~~i 224 (963)
||+||||+|+|||+|||+.||+++++++++++++|+|++++||+++|||+|++|||||.+|||||+|+|+|++ ..+++|
T Consensus 1 vn~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i 80 (311)
T PF00883_consen 1 VNLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPI 80 (311)
T ss_dssp HHHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEE
T ss_pred ChHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccE
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999998 667899
Q ss_pred EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeecCCCCCCCCCCcEEEecCceE
Q psy3774 225 VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKT 304 (963)
Q Consensus 225 ~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN~~~~~a~~pgDVi~~~~G~t 304 (963)
+|||||||||||||||||+.+|.+||+||+|||+|+|+|+++++||+|+||+++||+|||||||+|||||||||++||||
T Consensus 81 ~LVGKGiTFDtGG~~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~lk~~vnV~~~l~~~EN~i~~~a~~pgDVi~s~~GkT 160 (311)
T PF00883_consen 81 ALVGKGITFDTGGLSLKPSGGMEGMKYDMGGAAAVLGAMRAIAKLKLPVNVVAVLPLAENMISGNAYRPGDVITSMNGKT 160 (311)
T ss_dssp EEEEEEEEEEE-TTSSSCSTTGGGGGGGGHHHHHHHHHHHHHHHCT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-E
T ss_pred EEEcceEEEecCCccCCCCcchhhcccCcchHHHHHHHHHHHHHcCCCceEEEEEEcccccCCCCCCCCCCEEEeCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcccceeehhhhhhhhhcCCcEEEEeccchhhhhhhcCCCceEEeeCChhchHHHHHHHHHHHhHcCCceeecC
Q psy3774 305 IEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMP 384 (963)
Q Consensus 305 vEi~NTDAEGRLvLADal~ya~~~~p~~iiD~ATLTGa~~~AlG~~~~g~~~n~~~~~~~l~~~l~~a~~~~ge~~W~lP 384 (963)
|||.||||||||||||+|+||++++|+.|||+|||||||++|||++++|+|+||+ +|+++|++||+++||++||||
T Consensus 161 VEI~NTDAEGRLvLADaL~ya~~~~p~~iiDiATLTGa~~~ALG~~~ag~~sn~~----~l~~~l~~ag~~~gE~~WrlP 236 (311)
T PF00883_consen 161 VEIGNTDAEGRLVLADALTYAQEYKPDLIIDIATLTGACVVALGSDYAGVFSNDD----ELAKQLQEAGERSGERVWRLP 236 (311)
T ss_dssp EEES-TTGHHHHHHHHHHHHHHGGT-SEEEEEEE--HHHHHHHTTTSEEEEESSH----HHHHHHHHHHHHHT--EEEE-
T ss_pred EEEEeeCcccceeehhHHHHHHhhCCceEEeehhhhhHHHeeECCceeeeecCCH----HHHHHHHHHHHhcCCceeccc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CchhhHhhcCCCccccccCCCCC-ccchHHHHHHHhccCC--CCeEEEeeccCcccCCC--CCCchhhh
Q psy3774 385 IEDRYQKQLKSNFADISNIGNSS-ADSITAACFLENFTKK--YVWAHLDIAGVAWKSGD--KKGATVEL 448 (963)
Q Consensus 385 l~~~y~~~l~s~~ADl~N~~~~~-~g~~~AA~FL~~Fv~~--~~w~HlDiAG~a~~~~~--~~g~~~~l 448 (963)
|+++|+++++|++|||+|++++. +|+|+||+||++||++ +||+||||||++|.+.. ++|+|+..
T Consensus 237 l~~~y~~~lks~~ADl~N~~~~~~~g~~~AA~FL~~Fv~~~~~~w~HlDIAg~a~~~~~~~~~gaTG~g 305 (311)
T PF00883_consen 237 LWEEYREQLKSDIADLKNSGGRRGAGAITAAAFLKEFVEDGDVPWAHLDIAGTAWSDKDGPPKGATGFG 305 (311)
T ss_dssp --HHHGGGGC-SSSSEESSSSSSTTHHHHHHHHHHTTCTTCTSEEEEEEETTTSEETSTTTTSEE-STT
T ss_pred ccHHHHHhcccccchhhccCCCCCCCccHHHHHHHHhCCCCCCceEEEEecCccccCCCCCCCCeeccc
Confidence 99999999999999999998755 5999999999999998 89999999999998754 56666543
No 12
>KOG2597|consensus
Probab=100.00 E-value=1.3e-106 Score=914.20 Aligned_cols=465 Identities=34% Similarity=0.512 Sum_probs=409.8
Q ss_pred ccCCCEEEEEEecCCC------ccccccccC--chHHHHHHHHcCCCCCCCCCEEEEcccCCCCccEEEEEEcCCCCCcC
Q psy3774 473 SLKTDCLVVGIFKKNK------LSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGDKKKKI 544 (963)
Q Consensus 473 ~~~~d~lVv~v~e~~~------l~~~~~~ld--~~g~l~~~i~~~~f~gk~ge~~~l~~~~~~~~~~vllvGLG~~~~~~ 544 (963)
....|+|||+++++.. .++..+.+| +.+.+..+++..++.++.|+...+..... ..+++.++|+|++....
T Consensus 22 ~~~~~~lvVG~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~a~vg~gk~~~~~ 100 (513)
T KOG2597|consen 22 EAKADGLVVGVYSKEGDKKSKKKTPAGEKFDDKLGGKLIELIRESGVDGKLGYGRVLELVDP-EYDVVAVVGLGKEGAGP 100 (513)
T ss_pred cccCceEEEEEechhccccccccccchhhcccccccchheeeeccCCCCCcceeeEEEecCC-CcceeehhhhhhhhcCc
Confidence 4568999999997532 223344455 77888899999999999999999987654 47899999999722222
Q ss_pred C--------HHHHHHHHHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHHHhcCcccCCCccCCCCCCccCceE
Q psy3774 545 K--------ESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKK 616 (963)
Q Consensus 545 ~--------~~~~r~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~l~~Y~f~~yk~~~~~~~~~l~~ 616 (963)
+ .+..|.+.+...+.+.......+.+.-+ ....++.++|+.|+.|+|+.+|++++.. ...+
T Consensus 101 ~~~~~~~e~~~~v~~a~~~~~~al~~~~~~~~~v~s~---------~~~~e~aa~g~~l~~~~~~~~~~~~~~~--~~~~ 169 (513)
T KOG2597|consen 101 NAKEGLDEGMEFVRVAARFGARALVLALGRLVPVYSP---------MDYAEQAAEGAALALWRYNRNKSKKNRP--SLPK 169 (513)
T ss_pred chhhhccchhhhhhhhcccchHHHHHhhcceeecccc---------cchHHHhhcccccccccccccccccccc--ccce
Confidence 2 2456777777777777665555433321 1246789999999999999999987643 4567
Q ss_pred EEEEecCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeee
Q psy3774 617 IIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSV 696 (963)
Q Consensus 617 l~l~~~~~~~~~~~~~~~~~~~ia~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laV 696 (963)
+.++.+. +.++.|+++...++++|+||+|+++|+|.|||..|+|+++++++++|++++|++++|+++++|++||+|
T Consensus 170 i~~~~~~----~~~~~~k~~~~~~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V 245 (513)
T KOG2597|consen 170 IDLYGSG----DGEDAWKRGLFKAAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAV 245 (513)
T ss_pred EEeecCC----cchHHHHHHHHHHHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeee
Confidence 7777643 126789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEEEEcCCCCCCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEE
Q psy3774 697 THGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVI 776 (963)
Q Consensus 697 g~GS~~~Prli~l~Y~g~~~~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi 776 (963)
++||++||+||+|+|+|.+..+++|+||||||||||||+||||..+|+.||.||+|||+|+|+|+|++.+++|+||++++
T Consensus 246 ~k~s~~pP~ll~lsY~g~~~~~~~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~~~in~~~v~ 325 (513)
T KOG2597|consen 246 AKASCEPPRLLELSYKGTSGADKTILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLSLPINVHAVL 325 (513)
T ss_pred ccccCCCCEEEEEEEcCCCCCcceEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcCCCCceEEEE
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCCCCCEEEccCCeEEeecCCCcccceehhhhhhhhhh-cCCcEEEEecchhHHHHHhhCCCceEEeeCC
Q psy3774 777 VASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVER-FKPSVVIDIATLTGACVVALGHHNSGLFSRN 855 (963)
Q Consensus 777 ~~~ENm~~g~a~kPgDVits~~GkTVEV~NTDAEGRLvLADaL~Ya~~-~~p~~iIDiATLTGA~~vALG~~~ag~~sn~ 855 (963)
|+|||||||+|+|||||||++|||||||.||||||||||||+|+|||+ |+|++|||+|||||+|.+|||..++|+|+|+
T Consensus 326 plcENm~sg~A~kpgDVit~~nGKtveI~NTDAEGRLiLADaL~Ya~~~~~~~~I~d~aTLTGa~~ialG~~~~gi~Tns 405 (513)
T KOG2597|consen 326 PLCENMPSGNATKPGDVITLRNGKTVEINNTDAEGRLVLADALLYAQETLKPKLIVDIATLTGAMRIALGEGAAGIFTNS 405 (513)
T ss_pred eeeccCCCccCCCCCcEEEecCCcEEEecccCccceEEeccHHHHhhhhcCCCEEEEeccchhhhHhhcCccceEEEcCh
Confidence 999999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhHcCCcEeeCCCChhhHhhc-CCCcccccCCCC-CCcchhHHHHHHHhccCCCCeEEEeeccCCc
Q psy3774 856 DEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQL-KSNFADISNIGN-SSADSITAACFLENFTKKYVWAHLDIAGVAW 933 (963)
Q Consensus 856 ~~~~~~l~~~l~~ag~~~gE~~W~lPl~~~y~~~l-kS~vADl~N~g~-~~~GaitAA~FL~~Fv~~~pWaHLDIAG~a~ 933 (963)
+ .||+++++||..+|||+||||||++|..++ +++.+|++|+|. +.+++||||+||++|+.+..|+|||||||..
T Consensus 406 ~----~l~k~~~~Ag~~tGD~vwrmplf~~~~~~v~~~~~~D~~n~g~~~~s~~~~aAAfL~~~v~~~~W~HlDiag~~~ 481 (513)
T KOG2597|consen 406 E----ELWKRLQKAGIETGDRVWRMPLFSYYYKAVADSGLADLNNTGSGRASRSCTAAAFLKEFVPCLDWAHLDIAGPGH 481 (513)
T ss_pred H----HHHHHHHHHHHhhCCceeechHHHHHHHHHhccchhhhccCCCCCCcchhHHHHHHHhhcCcceeEeeeccCcee
Confidence 9 999999999999999999999999988775 799999999994 4444999999999999999999999999862
Q ss_pred cC----C-C-CCCCCcchHHHHHHHHHhhC
Q psy3774 934 KS----G-D-KKGATGRPVTLLTYYLMLKS 957 (963)
Q Consensus 934 ~~----~-~-~kGaTG~gvr~L~~~l~~~~ 957 (963)
.. . . +..+||||+|||+|||.+.+
T Consensus 482 ~~~~~~~y~~~~~mTg~p~~Tlve~l~q~s 511 (513)
T KOG2597|consen 482 TDIGGTPYLHKGLMTGRPTRTLVEFLYQMS 511 (513)
T ss_pred cCCCCCcccccccccCCCceehHHHHHHhc
Confidence 22 1 2 34499999999999999876
No 13
>PRK05015 aminopeptidase B; Provisional
Probab=100.00 E-value=4.7e-105 Score=891.40 Aligned_cols=310 Identities=38% Similarity=0.535 Sum_probs=292.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcC---CCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEE
Q psy3774 134 NAIIYGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDY---KMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLI 210 (963)
Q Consensus 134 ~~~~~~~~ia~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~---gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li 210 (963)
+..+++.+..+++++||||+|+|+|+|||+.||++++++++++ +++|+|+++++|+++||++|++|||||.+||+||
T Consensus 91 ~~~~~l~~~~~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~pP~lv 170 (424)
T PRK05015 91 AQQQELDARLKIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSERPPVLL 170 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCCCCEEE
Confidence 3457889999999999999999999999999999999998886 6999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCcE--EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeecCCCC
Q psy3774 211 IIKYMNGKFKEAPI--VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSG 288 (963)
Q Consensus 211 ~l~y~~~~~~~~~i--~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN~~~~ 288 (963)
+|+|+|.++.++|+ +|||||||||||||||||+.+|..||+||||||+|+|+|.+++++++|+||++++|+|||||||
T Consensus 171 ~L~Y~~~g~~~~~v~~aLVGKGITFDSGG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~~l~~nV~~il~~aENmisg 250 (424)
T PRK05015 171 ALDYNPTGDPDAPVYACLVGKGITFDSGGYSIKPSAGMDSMKSDMGGAATVTGALALAITRGLNKRVKLFLCCAENLISG 250 (424)
T ss_pred EEEecCCCCCCCCeeEEEecCceEecCCCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhcCCCceEEEEEEecccCCCC
Confidence 99999976656666 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEecCceEEEeecCCcccceeehhhhhhhhhcCCcEEEEeccchhhhhhhcCCCceEEeeCChhchHHHHHH
Q psy3774 289 NSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLD 368 (963)
Q Consensus 289 ~a~~pgDVi~~~~G~tvEi~NTDAEGRLvLADal~ya~~~~p~~iiD~ATLTGa~~~AlG~~~~g~~~n~~~~~~~l~~~ 368 (963)
+|||||||||++|||||||.||||||||||||+|+||++++|+.|||+|||||||++|||++|+|+||||+ +|+++
T Consensus 251 ~A~kpgDVIt~~nGkTVEI~NTDAEGRLVLAD~L~yA~~~~p~~IID~ATLTGA~~~ALG~~~agvfsndd----~l~~~ 326 (424)
T PRK05015 251 NAFKLGDIITYRNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAKTALGNDYHALFSFDD----ELAQR 326 (424)
T ss_pred CCCCCCCEEEecCCcEEeeeccCccceeeehhHHHHhhhcCCCEEEEeeccchhhHhhhCCCceeeecCCH----HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhHcCCceeecCCchhhHhhcCCCccccccCCC--CCccchHHHHHHHhccCCC--CeEEEeeccCcccCC---CC
Q psy3774 369 LLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGN--SSADSITAACFLENFTKKY--VWAHLDIAGVAWKSG---DK 441 (963)
Q Consensus 369 l~~a~~~~ge~~W~lPl~~~y~~~l~s~~ADl~N~~~--~~~g~~~AA~FL~~Fv~~~--~w~HlDiAG~a~~~~---~~ 441 (963)
+++||+.+||++|||||+++|+++++|++|||+|+++ +.||+||||+||++||++. ||+|||||||.+... .+
T Consensus 327 l~~a~~~~gE~~WrLPl~~~~~~~l~S~~ADl~N~~~~~~~aGa~tAA~FL~~Fv~~~~~~W~HlDiAgt~~~~~~~~~~ 406 (424)
T PRK05015 327 LLASAAQENEPFWRLPLAEFHRSQLPSNFADLANSGSGAGPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKSAVDQWA 406 (424)
T ss_pred HHHHHHHhCCceeecCCCHHHHHhcCCCcchhcCCCCCCCCCCchHHHHHHHHHcCCCCCceEEEEccCcccCCCCCCCC
Confidence 9999999999999999999999999999999999973 6799999999999999864 599999999944322 24
Q ss_pred CCchhh
Q psy3774 442 KGATVE 447 (963)
Q Consensus 442 ~g~~~~ 447 (963)
+|+|+.
T Consensus 407 ~GaTG~ 412 (424)
T PRK05015 407 AGATGL 412 (424)
T ss_pred CCcccH
Confidence 566644
No 14
>KOG2597|consensus
Probab=100.00 E-value=1.4e-101 Score=873.53 Aligned_cols=423 Identities=36% Similarity=0.550 Sum_probs=377.5
Q ss_pred CCCEEEEEEecCCC------cCcccccCC--cHHHHHHHHHcCCCCCCCCCEEEEcccCCCcccEEEEEeccCcccc---
Q psy3774 4 KTDCLVVGIFKKNK------LSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGASNLL--- 72 (963)
Q Consensus 4 ~ad~lVvgV~e~~~------l~~~~~~ld--~~g~l~~~l~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlGk~~~~--- 72 (963)
..|+||||+++..+ .++..+.+| +.|.+..++...+++++.|+..++..... .+.++.++|+|++.+.
T Consensus 24 ~~~~lvVG~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~a~vg~gk~~~~~~~ 102 (513)
T KOG2597|consen 24 KADGLVVGVYSKEGDKKSKKKTPAGEKFDDKLGGKLIELIRESGVDGKLGYGRVLELVDP-EYDVVAVVGLGKEGAGPNA 102 (513)
T ss_pred cCceEEEEEechhccccccccccchhhcccccccchheeeeccCCCCCcceeeEEEecCC-CcceeehhhhhhhhcCcch
Confidence 36999999997532 344455666 88899999999999999999999887654 4789999999987610
Q ss_pred ------------------------cccCcccccccchhHHHHHHHHHHHhccccccccccCCCCcccCccEEEEEecCCC
Q psy3774 73 ------------------------LMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKN 128 (963)
Q Consensus 73 ------------------------~~l~~~~~~~~d~~~~~~~~~eg~~l~~Y~f~~~ks~~~~~~~~~~~l~l~~~~~~ 128 (963)
......++.. .....++.++|..|+.|+|+.+|+++++ ....++.++.+. +
T Consensus 103 ~~~~~e~~~~v~~a~~~~~~al~~~~~~~~~v~s--~~~~~e~aa~g~~l~~~~~~~~~~~~~~--~~~~~i~~~~~~-~ 177 (513)
T KOG2597|consen 103 KEGLDEGMEFVRVAARFGARALVLALGRLVPVYS--PMDYAEQAAEGAALALWRYNRNKSKKNR--PSLPKIDLYGSG-D 177 (513)
T ss_pred hhhccchhhhhhhhcccchHHHHHhhcceeeccc--ccchHHHhhccccccccccccccccccc--cccceEEeecCC-c
Confidence 0111122222 1235688999999999999999987653 345677776542 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCe
Q psy3774 129 YIDGKNAIIYGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPK 208 (963)
Q Consensus 129 ~~~~~~~~~~~~~ia~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~ 208 (963)
.++.|+++...++++|+||+|+++|+|+|||..|+|++++++++++++++|++++|+++++|++||+|++||++||+
T Consensus 178 ---~~~~~k~~~~~~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ 254 (513)
T KOG2597|consen 178 ---GEDAWKRGLFKAAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPR 254 (513)
T ss_pred ---chHHHHHHHHHHHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccCCCCE
Confidence 16789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCCcEEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeecCCCC
Q psy3774 209 LIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSG 288 (963)
Q Consensus 209 li~l~y~~~~~~~~~i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN~~~~ 288 (963)
|++|+|+|.+..++||+||||||||||||+||||...|.+||+||+|||+|+|+++|+++|++|+||++++|+|||||||
T Consensus 255 ll~lsY~g~~~~~~~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~~~in~~~v~plcENm~sg 334 (513)
T KOG2597|consen 255 LLELSYKGTSGADKTILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLSLPINVHAVLPLCENMPSG 334 (513)
T ss_pred EEEEEEcCCCCCcceEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcCCCCceEEEEeeeccCCCc
Confidence 99999999877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEecCceEEEeecCCcccceeehhhhhhhhh-cCCcEEEEeccchhhhhhhcCCCceEEeeCChhchHHHHH
Q psy3774 289 NSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVER-FKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVL 367 (963)
Q Consensus 289 ~a~~pgDVi~~~~G~tvEi~NTDAEGRLvLADal~ya~~-~~p~~iiD~ATLTGa~~~AlG~~~~g~~~n~~~~~~~l~~ 367 (963)
+|+|||||||++|||||||.||||||||+|||+|+|||+ |+|++|||+|||||++.+|||+.++|+|+|++ +||+
T Consensus 335 ~A~kpgDVit~~nGKtveI~NTDAEGRLiLADaL~Ya~~~~~~~~I~d~aTLTGa~~ialG~~~~gi~Tns~----~l~k 410 (513)
T KOG2597|consen 335 NATKPGDVITLRNGKTVEINNTDAEGRLVLADALLYAQETLKPKLIVDIATLTGAMRIALGEGAAGIFTNSE----ELWK 410 (513)
T ss_pred cCCCCCcEEEecCCcEEEecccCccceEEeccHHHHhhhhcCCCEEEEeccchhhhHhhcCccceEEEcChH----HHHH
Confidence 999999999999999999999999999999999999998 99999999999999999999999999999999 9999
Q ss_pred HHHHHHhHcCCceeecCCchhhHhhc-CCCccccccCCCCCcc-chHHHHHHHhccCCCCeEEEeeccCcccCC
Q psy3774 368 DLLRAGKMSGDTAWNMPIEDRYQKQL-KSNFADISNIGNSSAD-SITAACFLENFTKKYVWAHLDIAGVAWKSG 439 (963)
Q Consensus 368 ~l~~a~~~~ge~~W~lPl~~~y~~~l-~s~~ADl~N~~~~~~g-~~~AA~FL~~Fv~~~~w~HlDiAG~a~~~~ 439 (963)
++++||..+|||+||||||++|.+++ +++.+|++|.++.+++ +||||+||++|+.+..|+|||||||...+.
T Consensus 411 ~~~~Ag~~tGD~vwrmplf~~~~~~v~~~~~~D~~n~g~~~~s~~~~aAAfL~~~v~~~~W~HlDiag~~~~~~ 484 (513)
T KOG2597|consen 411 RLQKAGIETGDRVWRMPLFSYYYKAVADSGLADLNNTGSGRASRSCTAAAFLKEFVPCLDWAHLDIAGPGHTDI 484 (513)
T ss_pred HHHHHHHhhCCceeechHHHHHHHHHhccchhhhccCCCCCCcchhHHHHHHHhhcCcceeEeeeccCceecCC
Confidence 99999999999999999999887666 7999999999854444 999999999999999999999999984443
No 15
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=99.72 E-value=2.5e-17 Score=158.94 Aligned_cols=124 Identities=34% Similarity=0.409 Sum_probs=102.9
Q ss_pred EEEEecCCCccccccccC--chHHHHHHHHcCCCCCCCCCEEEEcccCCCCccEEEEEEcCCCCCcCCHHHHHHHHHHHH
Q psy3774 480 VVGIFKKNKLSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIM 557 (963)
Q Consensus 480 Vv~v~e~~~l~~~~~~ld--~~g~l~~~i~~~~f~gk~ge~~~l~~~~~~~~~~vllvGLG~~~~~~~~~~~r~a~~~a~ 557 (963)
|||||++..+++....+| +++.++++++.++|+||.||++.++.+++...+|+++||||+ .++++.+.+|++++.++
T Consensus 1 Vv~v~~~~~~~~~~~~ld~~~~~~l~~~~~~~~f~gk~ge~~~l~~~~~~~~~~v~lvGlG~-~~~~~~~~~r~a~~~~~ 79 (126)
T PF02789_consen 1 VVGVFEGGKLSPAAKALDKALDGLLSRLIKAGDFKGKAGETLLLPGPGGIKAKRVLLVGLGK-KEKLTAESLRKAGAAAA 79 (126)
T ss_dssp EEEEETTCEBGHHHHHHHHHTTTHHHHHHHTTSS--STT-EEEEEEETTTSCSEEEEEEEES-CTGBCHHHHHHHHHHHH
T ss_pred CEEEeCCCcCChHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCccEEEEEECCC-cCcCCHHHHHHHHHHHH
Confidence 799999988887777777 888999999999999999999999998887899999999999 88899999999999999
Q ss_pred HHHhhcCCceEEEecCCCcccccchHHHHHHHHHHHhcCcccCCCccCCC
Q psy3774 558 NVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKK 607 (963)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~l~~Y~f~~yk~~~ 607 (963)
+.+++.+.+++.+.++ +... ...+.++++++|+.++.|+|++|||+|
T Consensus 80 ~~l~~~~~~~v~i~l~-~~~~--~~~~~~~~~~~g~~l~~Y~f~~yks~K 126 (126)
T PF02789_consen 80 RALKKLKVKSVAIDLP-IDGE--NSDEAAEAAAEGALLGSYRFDKYKSKK 126 (126)
T ss_dssp HHHHHTT-SEEEEEGC-SSBT--TCHHHHHHHHHHHHHHT----TT-SS-
T ss_pred HHHhhCCceEEEEeCc-cccc--CcHHHHHHHHHHHHHcCccCCccCCCC
Confidence 9999999999999998 3322 233889999999999999999999975
No 16
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=99.34 E-value=1.6e-12 Score=125.38 Aligned_cols=99 Identities=38% Similarity=0.471 Sum_probs=74.7
Q ss_pred EEEEecCCCcCcccccCC--cHHHHHHHHHcCCCCCCCCCEEEEcccCCCcccEEEEEeccCcc----------------
Q psy3774 9 VVGIFKKNKLSSIVKDID--KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGASN---------------- 70 (963)
Q Consensus 9 VvgV~e~~~l~~~~~~ld--~~g~l~~~l~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlGk~~---------------- 70 (963)
|||||+++.+++.+..+| +.+.++++++..+|+|+.|+++.++.+++...+||++||||+.+
T Consensus 1 Vv~v~~~~~~~~~~~~ld~~~~~~l~~~~~~~~f~gk~ge~~~l~~~~~~~~~~v~lvGlG~~~~~~~~~~r~a~~~~~~ 80 (126)
T PF02789_consen 1 VVGVFEGGKLSPAAKALDKALDGLLSRLIKAGDFKGKAGETLLLPGPGGIKAKRVLLVGLGKKEKLTAESLRKAGAAAAR 80 (126)
T ss_dssp EEEEETTCEBGHHHHHHHHHTTTHHHHHHHTTSS--STT-EEEEEEETTTSCSEEEEEEEESCTGBCHHHHHHHHHHHHH
T ss_pred CEEEeCCCcCChHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCccEEEEEECCCcCcCCHHHHHHHHHHHHH
Confidence 799999988888888888 89999999999999999999999999888779999999999985
Q ss_pred ---------cccccCcccccccchhHHHHHHHHHHHhccccccccccCC
Q psy3774 71 ---------LLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKK 110 (963)
Q Consensus 71 ---------~~~~l~~~~~~~~d~~~~~~~~~eg~~l~~Y~f~~~ks~~ 110 (963)
+.+.++ + +.....+.++++++|+.++.|+|++|||+|
T Consensus 81 ~l~~~~~~~v~i~l~-~--~~~~~~~~~~~~~~g~~l~~Y~f~~yks~K 126 (126)
T PF02789_consen 81 ALKKLKVKSVAIDLP-I--DGENSDEAAEAAAEGALLGSYRFDKYKSKK 126 (126)
T ss_dssp HHHHTT-SEEEEEGC-S--SBTTCHHHHHHHHHHHHHHT----TT-SS-
T ss_pred HHhhCCceEEEEeCc-c--cccCcHHHHHHHHHHHHHcCccCCccCCCC
Confidence 111222 1 122233789999999999999999999974
No 17
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=90.22 E-value=3.3 Score=47.10 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=69.5
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCCCCC
Q psy3774 143 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEA 222 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~~~~ 222 (963)
.+.+.+.++|++.|+-.-.-...+++..+.++++|++|++.. .+.+++. .|+. +|.++...+.-.-....
T Consensus 6 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~--------~~n~i~~-~~~~-~~~l~~~~H~DtVp~~~ 75 (348)
T PRK04443 6 LEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVDE--------AGNARGP-AGDG-PPLVLLLGHIDTVPGDI 75 (348)
T ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEEcC--------CCcEEEE-cCCC-CCEEEEEeeccccCCCC
Confidence 356789999999999877778899999999999999988643 2345554 3443 35555544432211112
Q ss_pred cE-----EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEE
Q psy3774 223 PI-----VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIV 280 (963)
Q Consensus 223 ~i-----~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~ 280 (963)
|. -+-|+|.+ -|++|.|+++.+++++ ..+++.+|+-++.
T Consensus 76 p~~~~~g~iyGrG~~------------------D~Kg~~aa~l~A~~~l-~~~~~~~i~~~~~ 119 (348)
T PRK04443 76 PVRVEDGVLWGRGSV------------------DAKGPLAAFAAAAARL-EALVRARVSFVGA 119 (348)
T ss_pred CcEeeCCeEEeeccc------------------ccccHHHHHHHHHHHh-cccCCCCEEEEEE
Confidence 21 23333322 2356788888888888 5566666655544
No 18
>PRK06915 acetylornithine deacetylase; Validated
Probab=89.06 E-value=8.6 Score=44.90 Aligned_cols=124 Identities=17% Similarity=0.144 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHH------------H-HhcCCeEeeecCCCCCCCeE
Q psy3774 143 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQM------------Q-RLKMGSLLSVTHGSSEPPKL 209 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l------------~-~~gm~~~laVg~gS~~~p~l 209 (963)
.+.+.+.|+|+..|+-.-+....+++.++.++++|++++++....- . ..+-+.+++.=+|+...|.+
T Consensus 17 ~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~~~~l 96 (422)
T PRK06915 17 EEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLKGSGGGKSM 96 (422)
T ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEcCCCCCCeE
Confidence 3567899999999997777889999999999999999987643221 0 11335566654554433444
Q ss_pred EEE-EEccCCCC---C---Cc----E---EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCc
Q psy3774 210 III-KYMNGKFK---E---AP----I---VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LEL 273 (963)
Q Consensus 210 i~l-~y~~~~~~---~---~~----i---~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~v 273 (963)
+.. +|.--+.. . .| + -|-|.|.+ -+++|-|+++.++.++.+.+ ++.
T Consensus 97 ~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~------------------D~Kgg~aa~l~a~~~l~~~~~~~~~ 158 (422)
T PRK06915 97 ILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTT------------------DMKGGNVALLLAMEALIESGIELKG 158 (422)
T ss_pred EEEeeccccCCCCcccCcCCCCCceEECCEEEecCcc------------------cchHHHHHHHHHHHHHHHcCCCCCC
Confidence 433 33221110 0 11 1 14455533 22466688899999998876 566
Q ss_pred EEEEEEEeeec
Q psy3774 274 NIIGVIVASEN 284 (963)
Q Consensus 274 nv~~~~~~~EN 284 (963)
+|+-++-.-|.
T Consensus 159 ~v~~~~~~dEE 169 (422)
T PRK06915 159 DVIFQSVIEEE 169 (422)
T ss_pred cEEEEEecccc
Confidence 77654444454
No 19
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=88.97 E-value=5 Score=45.64 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCCCCCCC
Q psy3774 640 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEA 719 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~~~~~~ 719 (963)
.+.+.+.++|++.|+---.-...++...+++++.|++|++.+ .+.+.+. .|+. +|.++...+.---....
T Consensus 6 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~--------~~n~i~~-~~~~-~~~l~~~~H~DtVp~~~ 75 (348)
T PRK04443 6 LEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVDE--------AGNARGP-AGDG-PPLVLLLGHIDTVPGDI 75 (348)
T ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEEcC--------CCcEEEE-cCCC-CCEEEEEeeccccCCCC
Confidence 346789999999999776777888889999999999998643 2445555 3443 36666554432211111
Q ss_pred cE-----EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeecc
Q psy3774 720 PI-----VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASEN 781 (963)
Q Consensus 720 ~i-----~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~EN 781 (963)
|. -+-|+|.+ +| .+|.|+.+-+++++ +.+++.+|+-++-..|=
T Consensus 76 p~~~~~g~iyGrG~~---------------D~---Kg~~aa~l~A~~~l-~~~~~~~i~~~~~~dEE 123 (348)
T PRK04443 76 PVRVEDGVLWGRGSV---------------DA---KGPLAAFAAAAARL-EALVRARVSFVGAVEEE 123 (348)
T ss_pred CcEeeCCeEEeeccc---------------cc---ccHHHHHHHHHHHh-cccCCCCEEEEEEcccc
Confidence 21 24444442 34 35788888888888 66777777766665554
No 20
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=88.74 E-value=2.6 Score=48.34 Aligned_cols=119 Identities=22% Similarity=0.203 Sum_probs=70.6
Q ss_pred HHHHHhccCCC---CCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcC-CeEeeecCCCCCCCe-EEEEEEccCCCC-
Q psy3774 147 ELTKNLGNLSA---NICTPTYLENISKKLSFDYKMDIEIINREQMQRLKM-GSLLSVTHGSSEPPK-LIIIKYMNGKFK- 220 (963)
Q Consensus 147 ~~aRdL~n~P~---N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm-~~~laVg~gS~~~p~-li~l~y~~~~~~- 220 (963)
.+.|+|+..|+ ..-.-...+++.++.++++|+++++.....-..... +.+.+. .|+...|. ++.-++.--+..
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~ill~~H~DtVp~~~ 80 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKE-PGNGNEKSLIFNGHYDVVPAGD 80 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEec-cCCCCCCEEEEecccccccCCC
Confidence 46788999998 555567889999999999999998765321000000 123333 56544344 444344322211
Q ss_pred -----CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCcEEEEEEEeeec
Q psy3774 221 -----EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 284 (963)
Q Consensus 221 -----~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~vnv~~~~~~~EN 284 (963)
..|. -+-|+|.+ .|++|.|+.+.+++++.+.+ ++.+|+-++-..|=
T Consensus 81 ~~~w~~~Pf~~~~~~g~i~grG~~------------------D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 140 (375)
T TIGR01910 81 LELWKTDPFKPVEKDGKLYGRGAT------------------DMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEE 140 (375)
T ss_pred hhhCcCCCCCcEEECCEEEecCcc------------------ccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcc
Confidence 0121 12333321 23578899999999998865 56777777766654
No 21
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=88.62 E-value=3 Score=47.78 Aligned_cols=120 Identities=24% Similarity=0.273 Sum_probs=70.3
Q ss_pred HHHHHhccCCC---CCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCC-CCC--
Q psy3774 644 ELTKNLGNLSA---NICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNG-KFK-- 717 (963)
Q Consensus 644 ~~aRdL~n~P~---N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~-~~~-- 717 (963)
.+.|+|++.|+ .--.-...++..++.+++.|+++++++...-....++-+++.-.|+...|.++...+.-. +..
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~ 81 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDL 81 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCCCCCEEEEecccccccCCCh
Confidence 46788999998 444556788888898999999998875431000001112333356654454444333211 110
Q ss_pred ----CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeecc
Q psy3774 718 ----EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 781 (963)
Q Consensus 718 ----~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~EN 781 (963)
..|. -+-|+|.+ +| .+|.|+.+.+++++.+.+ ++.+|+-++-..|=
T Consensus 82 ~~w~~~Pf~~~~~~g~i~grG~~---------------D~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 140 (375)
T TIGR01910 82 ELWKTDPFKPVEKDGKLYGRGAT---------------DM---KGGLVALLYALKAIREAGIKPNGNIILQSVVDEE 140 (375)
T ss_pred hhCcCCCCCcEEECCEEEecCcc---------------cc---chHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcc
Confidence 1122 13344432 22 367899999999998875 56788887766654
No 22
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=88.50 E-value=7.2 Score=44.56 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=75.3
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcC---CCC-
Q psy3774 641 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN---GKF- 716 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g---~~~- 716 (963)
+.+++.|+|++.|+---.-...++..++.++++|++++.++. .+++.+.+.- |+. .|.++...+.- ...
T Consensus 3 ~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~-----~~~~n~~~~~-g~~-~~~i~l~~H~D~Vp~g~~ 75 (375)
T PRK13009 3 DVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDF-----GDVKNLWARR-GTE-GPHLCFAGHTDVVPPGDL 75 (375)
T ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEecc-----CCCcEEEEEe-cCC-CCEEEEEeecccCCCCCc
Confidence 457899999999986555566778888888999999987653 2466777764 664 35555444332 111
Q ss_pred --C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeeccC
Q psy3774 717 --K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASENM 782 (963)
Q Consensus 717 --~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~ENm 782 (963)
. ..|. -+.|.|. .+|| +|.|+.+.+++++.+.+ ++.+|+-+.-..|--
T Consensus 76 ~~w~~~Pf~~~~~~g~iyGrG~---------------~D~K---gg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 135 (375)
T PRK13009 76 EAWTSPPFEPTIRDGMLYGRGA---------------ADMK---GSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEG 135 (375)
T ss_pred ccCCCCCCCcEEECCEEEecCC---------------ccCh---HHHHHHHHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 0 0111 2444443 3444 47888888898887765 556887777777653
No 23
>PRK06915 acetylornithine deacetylase; Validated
Probab=88.17 E-value=5.8 Score=46.32 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHH-------------HhcCCCeEeeecCCCCCCCeE
Q psy3774 640 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQM-------------QRLKMGSLLSVTHGSSEPPKL 706 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l-------------~~~gmg~~laVg~GS~~~Prl 706 (963)
-+.+.+.|+|+..|+---.....++..++.++++|++++++....- ...+-..+++.=.|+..+|.+
T Consensus 17 ~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~~~~l 96 (422)
T PRK06915 17 EEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLKGSGGGKSM 96 (422)
T ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEcCCCCCCeE
Confidence 3467899999999997777788999999999999999987643210 012346667765565444555
Q ss_pred EEEEEc---CCCC-CC---Cc----E---EEeccCeeeccCCCCCCCCCChhhhcccc-hhhhHHHHHHHHHHhcC--CC
Q psy3774 707 IIIKYM---NGKF-KE---AP----I---VLVGKGVTFDTGGISIKPSYSMDEMKYDM-CGAASILGTLYAISEMN--LE 769 (963)
Q Consensus 707 i~l~Y~---g~~~-~~---~~----i---~LVGKGiTFDsGGislKp~~~M~~MK~DM-~GAAaVlga~~aia~l~--l~ 769 (963)
+...+. |..+ .. .| + -|-|.|.+ || +|-|+.+.++.++.+.+ ++
T Consensus 97 ~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~-------------------D~Kgg~aa~l~a~~~l~~~~~~~~ 157 (422)
T PRK06915 97 ILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTT-------------------DMKGGNVALLLAMEALIESGIELK 157 (422)
T ss_pred EEEeeccccCCCCcccCcCCCCCceEECCEEEecCcc-------------------cchHHHHHHHHHHHHHHHcCCCCC
Confidence 443332 1111 00 11 1 14555553 44 45578899999999876 56
Q ss_pred cEEEEEEEeecc
Q psy3774 770 LNIIGVIVASEN 781 (963)
Q Consensus 770 vnV~~vi~~~EN 781 (963)
.+|+-+.-.-|.
T Consensus 158 ~~v~~~~~~dEE 169 (422)
T PRK06915 158 GDVIFQSVIEEE 169 (422)
T ss_pred CcEEEEEecccc
Confidence 788655545565
No 24
>PRK07522 acetylornithine deacetylase; Provisional
Probab=87.42 E-value=5.1 Score=45.98 Aligned_cols=125 Identities=10% Similarity=0.048 Sum_probs=72.7
Q ss_pred HHHHHHHHHhccCCCCCCCHH-HHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEcc-CC--
Q psy3774 143 SKGIELTKNLGNLSANICTPT-YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN-GK-- 218 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP~-~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~-~~-- 218 (963)
.+.+.+.++|+..|+-.-.+. .+++++.+.++++|++++++...+ .+-+.+++.=.|. ..|.++...+-- -+
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~---~~~~nv~a~~~~~-~~~~ill~~H~Dtv~~~ 79 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPE---GDKANLFATIGPA-DRGGIVLSGHTDVVPVD 79 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCC---CCcccEEEEeCCC-CCCeEEEEeecccccCC
Confidence 456789999999998555554 899999999999999998764321 1123344443333 345544443322 11
Q ss_pred CC---CCcEE-EcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeee
Q psy3774 219 FK---EAPIV-LVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASE 283 (963)
Q Consensus 219 ~~---~~~i~-lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~E 283 (963)
+. ..|.. -+-.|..|=-|-. .|++|.|+.+.+++++.+.+++-+|.-++...|
T Consensus 80 ~~~W~~~pf~~~~~~g~i~GrG~~------------D~Kg~~a~~l~a~~~l~~~~~~~~i~~~~~~dE 136 (385)
T PRK07522 80 GQAWTSDPFRLTERDGRLYGRGTC------------DMKGFIAAALAAVPELAAAPLRRPLHLAFSYDE 136 (385)
T ss_pred CCCCCCCCCceEEECCEEEecccc------------ccchHHHHHHHHHHHHHhCCCCCCEEEEEEecc
Confidence 10 12221 1122222222211 235678888999999988776666655554444
No 25
>PRK13004 peptidase; Reviewed
Probab=87.13 E-value=13 Score=43.15 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=71.5
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEcc-CCCC--
Q psy3774 144 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN-GKFK-- 220 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~-~~~~-- 220 (963)
+.+.+.++|++.|+-.-.-...+++..+.++++|+++..++ +.+.++++=.|+. |+++...+-- -+..
T Consensus 16 ~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~-------~~~n~~a~~~~~~--~~i~~~~H~DtVp~~~~ 86 (399)
T PRK13004 16 DMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEID-------PMGNVLGYIGHGK--KLIAFDAHIDTVGIGDI 86 (399)
T ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEc-------CCCeEEEEECCCC--cEEEEEeccCccCCCCh
Confidence 56789999999999888888899999999999999865543 2456777655542 5555444432 1110
Q ss_pred ----CCcE-------EEcccceEEecCCCCCCCCCCccccccc-hhhHHHHHHHHHHHHhcCCC--cEEEEE
Q psy3774 221 ----EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYD-MCGAASILGTLYAISEMNLE--LNIIGV 278 (963)
Q Consensus 221 ----~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~D-m~GaAaV~g~~~a~a~l~l~--vnv~~~ 278 (963)
..|. .|.|.|. .| ++|.|+.+.+++++.+.+++ .+|+-+
T Consensus 87 ~~w~~~P~~~~~~~g~lyGrG~-------------------~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~ 139 (399)
T PRK13004 87 KNWDFDPFEGEEDDGRIYGRGT-------------------SDQKGGMASMVYAAKIIKDLGLDDEYTLYVT 139 (399)
T ss_pred hhcccCCCccEEECCEEEeCCc-------------------cccchHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 0121 3444453 23 58999999999999987753 455433
No 26
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=86.86 E-value=10 Score=43.38 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=72.7
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEE-EccCCCCC-
Q psy3774 144 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIK-YMNGKFKE- 221 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~-y~~~~~~~- 221 (963)
+.+++.|+|++.|+-.-.-...++..++.++++|++++.+.. .+++.+.+.- |+.. |.++... +.--+..+
T Consensus 3 ~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~-----~~~~n~~~~~-g~~~-~~i~l~~H~D~Vp~g~~ 75 (375)
T PRK13009 3 DVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDF-----GDVKNLWARR-GTEG-PHLCFAGHTDVVPPGDL 75 (375)
T ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEecc-----CCCcEEEEEe-cCCC-CEEEEEeecccCCCCCc
Confidence 456889999999986656677788888999999999887653 2456677664 6543 4444443 32211110
Q ss_pred -----CcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCcEEEEEEEeeec
Q psy3774 222 -----API-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 284 (963)
Q Consensus 222 -----~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~vnv~~~~~~~EN 284 (963)
.|. -+.|+|. .+|| +|.|+.+.+++++.+.+ ++.+|+-++...|-
T Consensus 76 ~~w~~~Pf~~~~~~g~iyGrG~---------------~D~K---gg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE 134 (375)
T PRK13009 76 EAWTSPPFEPTIRDGMLYGRGA---------------ADMK---GSLAAFVVAAERFVAAHPDHKGSIAFLITSDEE 134 (375)
T ss_pred ccCCCCCCCcEEECCEEEecCC---------------ccCh---HHHHHHHHHHHHHHHhcCCCCceEEEEEEeecc
Confidence 111 2333332 2333 57888888888887765 45577666666664
No 27
>PRK07522 acetylornithine deacetylase; Provisional
Probab=86.85 E-value=6.5 Score=45.12 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCCCCCCChH-HHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcC---CC
Q psy3774 640 SKGIELTKNLGNLSANICTPT-YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN---GK 715 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~-~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g---~~ 715 (963)
.+.+.+.++|+..|+-.-.+. .+++...+.++++|++++++.... .+-+.+++.-.|. ..|.++...+.- ..
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~---~~~~nv~a~~~~~-~~~~ill~~H~Dtv~~~ 79 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPE---GDKANLFATIGPA-DRGGIVLSGHTDVVPVD 79 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCC---CCcccEEEEeCCC-CCCeEEEEeecccccCC
Confidence 456889999999998554554 889999999999999998864321 1223455554343 345555544432 11
Q ss_pred CC---CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeecc
Q psy3774 716 FK---EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASEN 781 (963)
Q Consensus 716 ~~---~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~EN 781 (963)
.. ..|. .+-|+|.+ +| .+|.|+.+.++.++.+.+++-+|.-++-..|-
T Consensus 80 ~~~W~~~pf~~~~~~g~i~GrG~~---------------D~---Kg~~a~~l~a~~~l~~~~~~~~i~~~~~~dEE 137 (385)
T PRK07522 80 GQAWTSDPFRLTERDGRLYGRGTC---------------DM---KGFIAAALAAVPELAAAPLRRPLHLAFSYDEE 137 (385)
T ss_pred CCCCCCCCCceEEECCEEEecccc---------------cc---chHHHHHHHHHHHHHhCCCCCCEEEEEEeccc
Confidence 10 1222 24444442 23 35778888999999888777777766666664
No 28
>PRK13004 peptidase; Reviewed
Probab=86.54 E-value=9.9 Score=44.13 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCC---CC-
Q psy3774 641 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNG---KF- 716 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~---~~- 716 (963)
+.+.+.++|++.|+---.-...++...+.++++|+++..+| +.+.++++=.|+ +|+++...+.-. ..
T Consensus 16 ~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~-------~~~n~~a~~~~~--~~~i~~~~H~DtVp~~~~ 86 (399)
T PRK13004 16 DMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEID-------PMGNVLGYIGHG--KKLIAFDAHIDTVGIGDI 86 (399)
T ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEc-------CCCeEEEEECCC--CcEEEEEeccCccCCCCh
Confidence 56789999999999888888889999999999999865544 245677765554 266655544321 11
Q ss_pred --C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhccc-chhhhHHHHHHHHHHhcCC--CcEEEEEE
Q psy3774 717 --K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYD-MCGAASILGTLYAISEMNL--ELNIIGVI 776 (963)
Q Consensus 717 --~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~D-M~GAAaVlga~~aia~l~l--~vnV~~vi 776 (963)
. ..|. .|.|.|. .| .+|.|+.+.+++++.+.+. +.+|+-+.
T Consensus 87 ~~w~~~P~~~~~~~g~lyGrG~-------------------~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~ 140 (399)
T PRK13004 87 KNWDFDPFEGEEDDGRIYGRGT-------------------SDQKGGMASMVYAAKIIKDLGLDDEYTLYVTG 140 (399)
T ss_pred hhcccCCCccEEECCEEEeCCc-------------------cccchHHHHHHHHHHHHHhcCCCCCCeEEEEE
Confidence 0 1122 3455555 24 3788999999999998875 45654443
No 29
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=86.39 E-value=8.3 Score=44.37 Aligned_cols=122 Identities=21% Similarity=0.219 Sum_probs=74.6
Q ss_pred HHHHHHHHhccCCCCCCC-----hHHHHHHHHHhhhhCCCe-EEEeCHHHHHhcC--CCeEeeecCCCCCCCeEEEEEEc
Q psy3774 641 KGIELTKNLGNLSANICT-----PTYLENISKKLSFDYKMD-IEIINREQMQRLK--MGSLLSVTHGSSEPPKLIIIKYM 712 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~lt-----P~~la~~a~~l~~~~g~~-v~V~d~~~l~~~g--mg~~laVg~GS~~~Prli~l~Y~ 712 (963)
+.+.+.|+|+..|+.--+ -...++...+.++++|++ +++++..+-...+ -+.+++.=+|+..+|+++...+.
T Consensus 6 ~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll~~H~ 85 (400)
T PRK13983 6 EMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWIISHM 85 (400)
T ss_pred HHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEEEeec
Confidence 457899999999985422 346778888889999998 8877643211111 34566654554433455544443
Q ss_pred C---CCC-C---CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccc-hhhhHHHHHHHHHHhcC--CCcEEEEE
Q psy3774 713 N---GKF-K---EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDM-CGAASILGTLYAISEMN--LELNIIGV 775 (963)
Q Consensus 713 g---~~~-~---~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM-~GAAaVlga~~aia~l~--l~vnV~~v 775 (963)
- ... + ..|. -|-|+|. +|| +|.++.+.+++++.+.+ ++.+|.-+
T Consensus 86 Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~-------------------~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~ 146 (400)
T PRK13983 86 DVVPPGDLSLWETDPFKPVVKDGKIYGRGS-------------------EDNGQGIVSSLLALKALMDLGIRPKYNLGLA 146 (400)
T ss_pred cccCCCCcccccCCCCcceeeCCEEEecCc-------------------cCccchHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 2 111 0 1122 1334443 343 88888999999998876 56788777
Q ss_pred EEeecc
Q psy3774 776 IVASEN 781 (963)
Q Consensus 776 i~~~EN 781 (963)
.-.-|=
T Consensus 147 ~~~dEE 152 (400)
T PRK13983 147 FVSDEE 152 (400)
T ss_pred EEeccc
Confidence 777665
No 30
>PRK08652 acetylornithine deacetylase; Provisional
Probab=85.68 E-value=6.4 Score=44.33 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=70.5
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCCCCCc
Q psy3774 144 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAP 223 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~~~~~ 223 (963)
+.+.+.++|+..|+-.-.-...+++..+.++++|+++++.... +...+++ |+ .|+-++.-+|.--+...++
T Consensus 3 ~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~-----~~~~~~~---~~-~~~i~l~~H~D~vp~~~~~ 73 (347)
T PRK08652 3 RAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDG-----EVINIVV---NS-KAELFVEVHYDTVPVRAEF 73 (347)
T ss_pred hHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecC-----ceeEEEc---CC-CCEEEEEccccccCCCCCC
Confidence 4568899999999876777888999999999999999875432 1233443 32 2445555555443322222
Q ss_pred EEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeec
Q psy3774 224 IVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASEN 284 (963)
Q Consensus 224 i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN 284 (963)
. .+ ||.-..+ +.. .+++|.|+++.+++++.....+-+|+-+...-|-
T Consensus 74 ~--------~~-~g~iyGr--G~~---D~Kg~~a~~l~a~~~l~~~~~~~~v~~~~~~dEE 120 (347)
T PRK08652 74 F--------VD-GVYVYGT--GAC---DAKGGVAAILLALEELGKEFEDLNVGIAFVSDEE 120 (347)
T ss_pred E--------EE-CCEEEec--cch---hhhHHHHHHHHHHHHHhhcccCCCEEEEEecCcc
Confidence 1 11 2211111 112 3357889999999988765544445544444555
No 31
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=84.79 E-value=15 Score=43.06 Aligned_cols=125 Identities=11% Similarity=0.119 Sum_probs=76.4
Q ss_pred HHHHHHHHhccCCCCCCCHH---HHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCC-
Q psy3774 144 KGIELTKNLGNLSANICTPT---YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKF- 219 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~---~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~- 219 (963)
+.+.+-++|++.|+-.-... ..+++.++.++++|+++++...+. .+-+.+++.=.|+..|+-++.-+|.--+.
T Consensus 38 ~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~---~~~~~lia~~~g~~~~~ill~~H~D~Vp~~ 114 (410)
T PRK06133 38 AYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPP---SAGDMVVATFKGTGKRRIMLIAHMDTVYLP 114 (410)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCC---CCCCeEEEEECCCCCceEEEEeecCccCCC
Confidence 56688889999988655443 688999999999999998765321 12346777655654444444444433221
Q ss_pred ---CCCcEEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCC--cEEEEEEEeeec
Q psy3774 220 ---KEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLE--LNIIGVIVASEN 284 (963)
Q Consensus 220 ---~~~~i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~--vnv~~~~~~~EN 284 (963)
...|.... || .|. +.+..+|| +|.|+.+.+++++.+.+.+ -+|+.++-..|-
T Consensus 115 ~~w~~~Pf~~~--------~~-~iy-GrG~~D~k---gg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 171 (410)
T PRK06133 115 GMLAKQPFRID--------GD-RAY-GPGIADDK---GGVAVILHALKILQQLGFKDYGTLTVLFNPDEE 171 (410)
T ss_pred CccCCCCEEEE--------CC-EEE-CCccccch---HHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcc
Confidence 12344311 22 111 12223454 6789999999999887743 677776666655
No 32
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=84.76 E-value=10 Score=43.70 Aligned_cols=122 Identities=21% Similarity=0.208 Sum_probs=72.8
Q ss_pred HHHHHHHHhccCCCCCC-----CHHHHHHHHHHhhhcCCCe-EEEeCHHHHHHhc--CCeEeeecCCCCCCCeEEEEEEc
Q psy3774 144 KGIELTKNLGNLSANIC-----TPTYLENISKKLSFDYKMD-IEIINREQMQRLK--MGSLLSVTHGSSEPPKLIIIKYM 215 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~l-----tP~~~a~~a~~l~~~~gv~-v~v~~~~~l~~~g--m~~~laVg~gS~~~p~li~l~y~ 215 (963)
+.+.+.|+|+..|+..- .-...+++.++.++++|++ +++++..+-.-.+ -+.+++.=+|+.-+|+++...+.
T Consensus 6 ~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll~~H~ 85 (400)
T PRK13983 6 EMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWIISHM 85 (400)
T ss_pred HHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEEEeec
Confidence 45788999999988542 2357888889999999998 8877642211111 24555553454333444444332
Q ss_pred c-CCCC------CCcE-------EEcccceEEecCCCCCCCCCCccccccc-hhhHHHHHHHHHHHHhcC--CCcEEEEE
Q psy3774 216 N-GKFK------EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYD-MCGAASILGTLYAISEMN--LELNIIGV 278 (963)
Q Consensus 216 ~-~~~~------~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~D-m~GaAaV~g~~~a~a~l~--l~vnv~~~ 278 (963)
- -+.. ..|. -|-|+|. .| ++|.|+.+.+++++.+.+ ++.+|+.+
T Consensus 86 Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~-------------------~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~ 146 (400)
T PRK13983 86 DVVPPGDLSLWETDPFKPVVKDGKIYGRGS-------------------EDNGQGIVSSLLALKALMDLGIRPKYNLGLA 146 (400)
T ss_pred cccCCCCcccccCCCCcceeeCCEEEecCc-------------------cCccchHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 1 1110 0121 1233332 23 488899999999998876 55777776
Q ss_pred EEeeec
Q psy3774 279 IVASEN 284 (963)
Q Consensus 279 ~~~~EN 284 (963)
+..-|=
T Consensus 147 ~~~dEE 152 (400)
T PRK13983 147 FVSDEE 152 (400)
T ss_pred EEeccc
Confidence 666654
No 33
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=84.57 E-value=26 Score=41.03 Aligned_cols=126 Identities=12% Similarity=0.128 Sum_probs=77.6
Q ss_pred HHHHHHHHHhccCCCCCCChH---HHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcC-CC
Q psy3774 640 SKGIELTKNLGNLSANICTPT---YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN-GK 715 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~---~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g-~~ 715 (963)
-+.+.+-++|++.|+-.-.+. ..++..++.++++|+++++...+. .+-..+++.-.|+.. |.++...+.- -+
T Consensus 37 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~---~~~~~lia~~~g~~~-~~ill~~H~D~Vp 112 (410)
T PRK06133 37 PAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPP---SAGDMVVATFKGTGK-RRIMLIAHMDTVY 112 (410)
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCC---CCCCeEEEEECCCCC-ceEEEEeecCccC
Confidence 356788899999988654443 578888899999999998765321 123467777566644 4444443322 11
Q ss_pred --C--CCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEEEEEeeccC
Q psy3774 716 --F--KEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASENM 782 (963)
Q Consensus 716 --~--~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~vi~~~ENm 782 (963)
. ...|.... || .|. +.+..+|| +|.|+.+.++.++.+.+. +.+|+-++-..|-.
T Consensus 113 ~~~~w~~~Pf~~~--------~~-~iy-GrG~~D~k---gg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~ 172 (410)
T PRK06133 113 LPGMLAKQPFRID--------GD-RAY-GPGIADDK---GGVAVILHALKILQQLGFKDYGTLTVLFNPDEET 172 (410)
T ss_pred CCCccCCCCEEEE--------CC-EEE-CCccccch---HHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccc
Confidence 1 12344311 22 111 12223465 678999999999988874 46787777666653
No 34
>PRK09104 hypothetical protein; Validated
Probab=83.98 E-value=13 Score=44.19 Aligned_cols=119 Identities=11% Similarity=0.140 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCCCCCCCh------HHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCC-CCCCeEEEEEEc
Q psy3774 640 SKGIELTKNLGNLSANICTP------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGS-SEPPKLIIIKYM 712 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP------~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS-~~~Prli~l~Y~ 712 (963)
-+.+.+.++|+..|+---.| ..+++..++.+++.|+++++++.. +-..+++.=+|| ...|.++.+-+.
T Consensus 17 ~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~-----~~~~l~a~~~g~~~~~~~lll~gH~ 91 (464)
T PRK09104 17 DASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTP-----GHPMVVAHHEGPTGDAPHVLFYGHY 91 (464)
T ss_pred HHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecC-----CCCEEEEEecCCCCCCCEEEEEecc
Confidence 35678899999999854434 467888888889999999998732 334556665664 244666665553
Q ss_pred CC---CC---C-CCcE------------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcE
Q psy3774 713 NG---KF---K-EAPI------------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELN 771 (963)
Q Consensus 713 g~---~~---~-~~~i------------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vn 771 (963)
-- ++ + ..|. .|.|+|. .+ |.+|.|+.+-+++++.+++ +|.+
T Consensus 92 DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~---------------~D---~Kg~laa~l~a~~~l~~~~~~~~~~ 153 (464)
T PRK09104 92 DVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGA---------------SD---DKGQLMTFVEACRAWKAVTGSLPVR 153 (464)
T ss_pred cCCCCCCcccCCCCCCcceEecCcCCcceEEEecc---------------cC---CcHHHHHHHHHHHHHHHhcCCCCCc
Confidence 21 10 0 0121 2566665 11 2467888999999998864 6788
Q ss_pred EEEEEEeecc
Q psy3774 772 IIGVIVASEN 781 (963)
Q Consensus 772 V~~vi~~~EN 781 (963)
|+-++-.-|-
T Consensus 154 i~~~~~~dEE 163 (464)
T PRK09104 154 VTILFEGEEE 163 (464)
T ss_pred EEEEEECccc
Confidence 8777766554
No 35
>PRK08596 acetylornithine deacetylase; Validated
Probab=83.78 E-value=13 Score=43.52 Aligned_cols=119 Identities=19% Similarity=0.172 Sum_probs=78.6
Q ss_pred HHHHHHHHHhccCCCCCCC---hHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCC--CCeEEEEEEcCC
Q psy3774 640 SKGIELTKNLGNLSANICT---PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE--PPKLIIIKYMNG 714 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~lt---P~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~--~Prli~l~Y~g~ 714 (963)
-+.+.+.|+|++.|+---+ -..+++...+.+++.|+++++.+.. .+.+.+++.-+|+.. +|+++...+.-.
T Consensus 13 ~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~----~~~~nvia~~~g~~~~~~~~lll~~H~Dt 88 (421)
T PRK08596 13 DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVY----PNDPNVVGVKKGTESDAYKSLIINGHMDV 88 (421)
T ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEcc----CCCceEEEEecCCCCCCCcEEEEeccccc
Confidence 4678899999999985432 2346778888888899999887542 144677777667542 455555444321
Q ss_pred ---CC---C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhccc-chhhhHHHHHHHHHHhcC--CCcEEEEEEE
Q psy3774 715 ---KF---K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYD-MCGAASILGTLYAISEMN--LELNIIGVIV 777 (963)
Q Consensus 715 ---~~---~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~D-M~GAAaVlga~~aia~l~--l~vnV~~vi~ 777 (963)
.+ . ..|. -|-|+|. .| .+|-|+.+.+++++.+.+ ++.+|+-++-
T Consensus 89 Vp~~~~~~W~~~Pf~~~~~~g~lyGrG~-------------------~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~ 149 (421)
T PRK08596 89 AEVSADEAWETNPFEPTIKDGWLYGRGA-------------------ADMKGGLAGALFAIQLLHEAGIELPGDLIFQSV 149 (421)
T ss_pred cCCCCccccccCCCCcEEECCEEEeccc-------------------cccchHHHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 11 0 0121 2555554 33 467889999999998876 5788888877
Q ss_pred eecc
Q psy3774 778 ASEN 781 (963)
Q Consensus 778 ~~EN 781 (963)
..|.
T Consensus 150 ~dEE 153 (421)
T PRK08596 150 IGEE 153 (421)
T ss_pred eccc
Confidence 7776
No 36
>PRK06837 acetylornithine deacetylase; Provisional
Probab=83.49 E-value=17 Score=42.64 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=74.7
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHH-------------HhcCCeEeeecCCCC-CCCeE
Q psy3774 144 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQ-------------RLKMGSLLSVTHGSS-EPPKL 209 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~-------------~~gm~~~laVg~gS~-~~p~l 209 (963)
+.+.+.|+|++.|+-.-.-...+++.++.++++|++++++...+.. -.+-+.+++-=+|+. .+|.+
T Consensus 21 ~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~g~~~~~~~i 100 (427)
T PRK06837 21 AQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTYRPAGKTGRSL 100 (427)
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEecCCCCCCCeE
Confidence 4578899999999987777889999999999999999876543221 123344555434543 34555
Q ss_pred EEEEEcc-CCCC------CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCc
Q psy3774 210 IIIKYMN-GKFK------EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LEL 273 (963)
Q Consensus 210 i~l~y~~-~~~~------~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~v 273 (963)
+...+.- -+.. ..|. -|-|.| -.+ |++|.|+.+.++.++.+.+ ++.
T Consensus 101 l~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG---------------~~D---~Kgg~~a~l~a~~~l~~~~~~~~~ 162 (427)
T PRK06837 101 ILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRG---------------AAD---MKAGLAAMLFALDALRAAGLAPAA 162 (427)
T ss_pred EEEeecccCCCCCccccccCCCCcEEECCEEEecC---------------ccc---chHHHHHHHHHHHHHHHcCCCCCC
Confidence 5554432 1110 0121 233444 112 3688999999999998876 456
Q ss_pred EEEEEEEe
Q psy3774 274 NIIGVIVA 281 (963)
Q Consensus 274 nv~~~~~~ 281 (963)
+|+.+...
T Consensus 163 ~i~~~~~~ 170 (427)
T PRK06837 163 RVHFQSVI 170 (427)
T ss_pred cEEEEEEe
Confidence 77644433
No 37
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=83.21 E-value=12 Score=42.83 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=74.5
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEE-c--CCCC-
Q psy3774 641 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKY-M--NGKF- 716 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y-~--g~~~- 716 (963)
+.+.+.++|++.|+=--.....++...+.++++|+++++.+-.. +-..+++.- |+.. |+++...+ . |..+
T Consensus 3 ~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~----~~~~l~a~~-g~~~-~~il~~~H~DtVp~~~~ 76 (377)
T PRK08588 3 EKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVND----GRANLVAEI-GSGS-PVLALSGHMDVVAAGDV 76 (377)
T ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCC----CCceEEEEe-CCCC-ceEEEEeeecccCCCCc
Confidence 35678899999998666778888999999999999998764321 223454543 4333 54443333 2 1111
Q ss_pred C---CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccc-hhhhHHHHHHHHHHhcCC--CcEEEEEEEeeccC
Q psy3774 717 K---EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDM-CGAASILGTLYAISEMNL--ELNIIGVIVASENM 782 (963)
Q Consensus 717 ~---~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM-~GAAaVlga~~aia~l~l--~vnV~~vi~~~ENm 782 (963)
. ..|. .|-|.|.+ || +|.|+.+.+++++.+.+. +.+|.-+.-..|-.
T Consensus 77 ~~w~~~Pf~~~~~~g~l~GrG~~-------------------D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~ 136 (377)
T PRK08588 77 DKWTYDPFELTEKDGKLYGRGAT-------------------DMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEV 136 (377)
T ss_pred ccCcCCCCCeEEECCEEEecCcc-------------------cccchHHHHHHHHHHHHHcCCCCCCcEEEEEEccccc
Confidence 0 1122 24455542 44 478888899999988864 57888888777764
No 38
>PRK09104 hypothetical protein; Validated
Probab=82.89 E-value=13 Score=44.03 Aligned_cols=119 Identities=11% Similarity=0.126 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccCCCCCCCH------HHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCC-CCCCeEEEEEEc
Q psy3774 143 SKGIELTKNLGNLSANICTP------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGS-SEPPKLIIIKYM 215 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP------~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS-~~~p~li~l~y~ 215 (963)
-+.+.+.++|+..|+-.-.| ..++++.++.++++|+++++++. .+-..+++.=+|+ ...|.|+.+-|.
T Consensus 17 ~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~-----~~~~~l~a~~~g~~~~~~~lll~gH~ 91 (464)
T PRK09104 17 DASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDT-----PGHPMVVAHHEGPTGDAPHVLFYGHY 91 (464)
T ss_pred HHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEec-----CCCCEEEEEecCCCCCCCEEEEEecc
Confidence 35668889999999854434 46788888999999999998863 1334455554554 234555555543
Q ss_pred cC-CC-----C-CCcE------------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCcE
Q psy3774 216 NG-KF-----K-EAPI------------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELN 274 (963)
Q Consensus 216 ~~-~~-----~-~~~i------------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~vn 274 (963)
-. +. . ..|. .|.|+|. -.|++|.|+.+-+++++.+.+ +|.|
T Consensus 92 DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~------------------~D~Kg~laa~l~a~~~l~~~~~~~~~~ 153 (464)
T PRK09104 92 DVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGA------------------SDDKGQLMTFVEACRAWKAVTGSLPVR 153 (464)
T ss_pred cCCCCCCcccCCCCCCcceEecCcCCcceEEEecc------------------cCCcHHHHHHHHHHHHHHHhcCCCCCc
Confidence 21 00 0 0111 1455553 124577899999999998864 6778
Q ss_pred EEEEEEeeec
Q psy3774 275 IIGVIVASEN 284 (963)
Q Consensus 275 v~~~~~~~EN 284 (963)
|+-++..-|-
T Consensus 154 i~~~~~~dEE 163 (464)
T PRK09104 154 VTILFEGEEE 163 (464)
T ss_pred EEEEEECccc
Confidence 7766655554
No 39
>PRK07906 hypothetical protein; Provisional
Probab=82.49 E-value=8.5 Score=45.06 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=72.9
Q ss_pred HHHHHHhccCCCCC------CCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCC-CCeEEEEEE-ccC
Q psy3774 146 IELTKNLGNLSANI------CTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE-PPKLIIIKY-MNG 217 (963)
Q Consensus 146 ~~~aRdL~n~P~N~------ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~-~p~li~l~y-~~~ 217 (963)
+.+.++|+..|+-. -.-...+++.++.++++|+++++.+.. .+.+.+++.-+|+.. .|.++...+ .--
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~----~~~~nv~~~~~g~~~~~~~lll~~H~DtV 77 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESA----PGRANVVARLPGADPSRPALLVHGHLDVV 77 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecC----CCceEEEEEEeCCCCCCCcEEEEcccccC
Confidence 35667888888743 223468888889999999999986532 245667777666532 344443333 221
Q ss_pred CCC-----CCc----E---EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCcEEEEEEEeee
Q psy3774 218 KFK-----EAP----I---VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASE 283 (963)
Q Consensus 218 ~~~-----~~~----i---~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~vnv~~~~~~~E 283 (963)
+.. ..| + -+-|+|.+ .|++|.|+.+.+++++.+.+ ++.+|+-++-.-|
T Consensus 78 p~~~~~W~~~Pf~~~~~dg~iyGrG~~------------------D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 139 (426)
T PRK07906 78 PAEAADWSVHPFSGEIRDGYVWGRGAV------------------DMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADE 139 (426)
T ss_pred CCCcccCccCCCCceeeCCEEEecCcc------------------ccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCc
Confidence 110 011 1 45566643 24568999999999998876 4577777766665
Q ss_pred c
Q psy3774 284 N 284 (963)
Q Consensus 284 N 284 (963)
=
T Consensus 140 E 140 (426)
T PRK07906 140 E 140 (426)
T ss_pred c
Confidence 4
No 40
>PRK07907 hypothetical protein; Provisional
Probab=82.37 E-value=29 Score=41.00 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhccCCCCCCC------hHHHHHHHHHhhhhCCC-eEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEE
Q psy3774 639 ISKGIELTKNLGNLSANICT------PTYLENISKKLSFDYKM-DIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKY 711 (963)
Q Consensus 639 ia~g~~~aRdL~n~P~N~lt------P~~la~~a~~l~~~~g~-~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y 711 (963)
.-+.+.+.++|++.|+---. -..+++..++.++++|+ ++++++ ..+.+.+++.-.|+...|.++..-+
T Consensus 17 ~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-----~~~~~nl~a~~~~~~~~~~lll~gH 91 (449)
T PRK07907 17 LPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVS-----ADGAPAVIGTRPAPPGAPTVLLYAH 91 (449)
T ss_pred HHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEe-----cCCCCEEEEEecCCCCCCEEEEEcc
Confidence 34678999999999985422 13578888888999997 899886 2255677776555544466655444
Q ss_pred cC---CCC---C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEE
Q psy3774 712 MN---GKF---K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIV 777 (963)
Q Consensus 712 ~g---~~~---~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~ 777 (963)
.- ... + ..|. -|-|+|. .+|| +|.|+.+-+++++ ..++|++|..++-
T Consensus 92 ~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~---------------~D~K---g~~aa~l~a~~~l-~~~~~~~i~~~~~ 152 (449)
T PRK07907 92 HDVQPPGDPDAWDSPPFELTERDGRLYGRGA---------------ADDK---GGIAMHLAALRAL-GGDLPVGVTVFVE 152 (449)
T ss_pred cCCCCCCCccccCCCCceeEEECCEEEECCc---------------cCCc---HHHHHHHHHHHHh-ccCCCCcEEEEEE
Confidence 32 111 1 1232 3444454 2233 4677778888877 5677899888887
Q ss_pred eecc
Q psy3774 778 ASEN 781 (963)
Q Consensus 778 ~~EN 781 (963)
.-|-
T Consensus 153 ~dEE 156 (449)
T PRK07907 153 GEEE 156 (449)
T ss_pred cCcc
Confidence 7774
No 41
>PRK07906 hypothetical protein; Provisional
Probab=81.75 E-value=8.5 Score=45.06 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=74.6
Q ss_pred HHHHHHhccCCCCC------CChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCC-CCeEEEEEEcC--
Q psy3774 643 IELTKNLGNLSANI------CTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE-PPKLIIIKYMN-- 713 (963)
Q Consensus 643 ~~~aRdL~n~P~N~------ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~-~Prli~l~Y~g-- 713 (963)
+.+.++|+..|+-. -.-...++...+.+++.|+++++.+.. .+.+.+++.-+|+.. .|.++...+.-
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~----~~~~nv~~~~~g~~~~~~~lll~~H~DtV 77 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESA----PGRANVVARLPGADPSRPALLVHGHLDVV 77 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecC----CCceEEEEEEeCCCCCCCcEEEEcccccC
Confidence 35678888888843 123357777888889999999987532 256678887667643 34555433321
Q ss_pred -CCCC---CCc----E---EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeec
Q psy3774 714 -GKFK---EAP----I---VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASE 780 (963)
Q Consensus 714 -~~~~---~~~----i---~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~E 780 (963)
.... ..| + -+-|+|.+ +|| +|.|+.+.+++++.+.+ ++.+|+-++-.-|
T Consensus 78 p~~~~~W~~~Pf~~~~~dg~iyGrG~~---------------D~K---g~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 139 (426)
T PRK07906 78 PAEAADWSVHPFSGEIRDGYVWGRGAV---------------DMK---DMDAMMLAVVRHLARTGRRPPRDLVFAFVADE 139 (426)
T ss_pred CCCcccCccCCCCceeeCCEEEecCcc---------------ccc---hHHHHHHHHHHHHHHcCCCCCccEEEEEecCc
Confidence 1110 011 1 45677663 344 47899999999998875 4678887776665
Q ss_pred cC
Q psy3774 781 NM 782 (963)
Q Consensus 781 Nm 782 (963)
=.
T Consensus 140 E~ 141 (426)
T PRK07906 140 EA 141 (426)
T ss_pred cc
Confidence 43
No 42
>PRK06837 acetylornithine deacetylase; Provisional
Probab=81.26 E-value=24 Score=41.47 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=77.6
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHH-------------hcCCCeEeeecCCCC-CCCe
Q psy3774 640 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQ-------------RLKMGSLLSVTHGSS-EPPK 705 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~-------------~~gmg~~laVg~GS~-~~Pr 705 (963)
-+.+.+.|+|++.|+---.-...++..++.++++|++++++...... -.+-+.+++-=+|+. .+|.
T Consensus 20 ~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~g~~~~~~~ 99 (427)
T PRK06837 20 DAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTYRPAGKTGRS 99 (427)
T ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEecCCCCCCCe
Confidence 35578899999999987777788888999999999999887543221 123455555545543 3566
Q ss_pred EEEEEEcCC---CC---C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CC
Q psy3774 706 LIIIKYMNG---KF---K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LE 769 (963)
Q Consensus 706 li~l~Y~g~---~~---~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~ 769 (963)
++...+.-. .. + ..|. .|-|.|. .+| ++|.++.+.++.++.+.+ ++
T Consensus 100 il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~---------------~D~---Kgg~~a~l~a~~~l~~~~~~~~ 161 (427)
T PRK06837 100 LILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGA---------------ADM---KAGLAAMLFALDALRAAGLAPA 161 (427)
T ss_pred EEEEeecccCCCCCccccccCCCCcEEECCEEEecCc---------------ccc---hHHHHHHHHHHHHHHHcCCCCC
Confidence 665555321 10 0 1122 2445552 223 578889999999998876 46
Q ss_pred cEEEEEEEeec
Q psy3774 770 LNIIGVIVASE 780 (963)
Q Consensus 770 vnV~~vi~~~E 780 (963)
.+|+-+....|
T Consensus 162 ~~i~~~~~~dE 172 (427)
T PRK06837 162 ARVHFQSVIEE 172 (427)
T ss_pred CcEEEEEEecc
Confidence 77765444433
No 43
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=81.24 E-value=15 Score=42.18 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCCC---
Q psy3774 144 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFK--- 220 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~~--- 220 (963)
+.+.+.++|++.|+=.-.....+++..+.++++|+++++.+-.. +-..+++.- |+..|+.++.-++.--+..
T Consensus 3 ~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~----~~~~l~a~~-g~~~~~il~~~H~DtVp~~~~~ 77 (377)
T PRK08588 3 EKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVND----GRANLVAEI-GSGSPVLALSGHMDVVAAGDVD 77 (377)
T ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCC----CCceEEEEe-CCCCceEEEEeeecccCCCCcc
Confidence 45678889999998667788999999999999999998764321 223444442 3333333333333222110
Q ss_pred ---CCcE-------EEcccceEEecCCCCCCCCCCccccccch-hhHHHHHHHHHHHHhcCC--CcEEEEEEEeeecC
Q psy3774 221 ---EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDM-CGAASILGTLYAISEMNL--ELNIIGVIVASENM 285 (963)
Q Consensus 221 ---~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm-~GaAaV~g~~~a~a~l~l--~vnv~~~~~~~EN~ 285 (963)
..|. .|-|.|.+ || +|.|+.+.++.++.+.+. +.+|.-++-..|-.
T Consensus 78 ~w~~~Pf~~~~~~g~l~GrG~~-------------------D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~ 136 (377)
T PRK08588 78 KWTYDPFELTEKDGKLYGRGAT-------------------DMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEV 136 (377)
T ss_pred cCcCCCCCeEEECCEEEecCcc-------------------cccchHHHHHHHHHHHHHcCCCCCCcEEEEEEccccc
Confidence 0122 24455531 44 678888999999988764 46788777777763
No 44
>PRK09133 hypothetical protein; Provisional
Probab=80.01 E-value=14 Score=43.95 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=75.6
Q ss_pred HHHHHHHhccCCCCC--CChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEE-EEEc--CCC-
Q psy3774 642 GIELTKNLGNLSANI--CTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLII-IKYM--NGK- 715 (963)
Q Consensus 642 g~~~aRdL~n~P~N~--ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~-l~Y~--g~~- 715 (963)
.+.+.++|++.|+-. -.-...++...+.++++|++++.++..+. ..+.+.+++.-+|+...|.++. -+|. |..
T Consensus 39 ~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~-~~~~~nli~~~~g~~~~~~lll~~H~DtVp~~~ 117 (472)
T PRK09133 39 ARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGP-YPRKGNLVARLRGTDPKKPILLLAHMDVVEAKR 117 (472)
T ss_pred HHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccC-CCCceeEEEEecCCCCCCcEEEEeecccCCCCh
Confidence 477888999999864 33457888888999999997643221110 1256778887677654344443 3332 211
Q ss_pred -CC-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeecc
Q psy3774 716 -FK-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 781 (963)
Q Consensus 716 -~~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~EN 781 (963)
.+ ..|. -+.|+|. .+|| +|.|+.+.+++++.+.+ ++.+|+-++-..|=
T Consensus 118 ~~W~~dPf~~~~~dg~iyGRGa---------------~D~K---g~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE 176 (472)
T PRK09133 118 EDWTRDPFKLVEENGYFYGRGT---------------SDDK---ADAAIWVATLIRLKREGFKPKRDIILALTGDEE 176 (472)
T ss_pred hcCCCCCCcceEeCCEEEecCc---------------ccch---HHHHHHHHHHHHHHhcCCCCCCCEEEEEECccc
Confidence 00 1121 3556666 2344 48888889999998875 46788877777754
No 45
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=79.61 E-value=12 Score=42.46 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=67.8
Q ss_pred HHHHhccCCCCCCCH-HHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEE-ccCCC--C---
Q psy3774 148 LTKNLGNLSANICTP-TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKY-MNGKF--K--- 220 (963)
Q Consensus 148 ~aRdL~n~P~N~ltP-~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y-~~~~~--~--- 220 (963)
+.++|+..|+-.-+. ..++++.++.++++|+++++.+-.+ ..+-+.+++.=.|+. .|.++...+ .--+. .
T Consensus 2 ~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~--~~~~~nl~~~~~~~~-~~~i~l~~H~Dtvp~~~~~w~ 78 (364)
T TIGR01892 2 ILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPD--GAEKSNLVAVIGPSG-AGGLALSGHTDVVPYDDAAWT 78 (364)
T ss_pred hHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCC--CCccccEEEEecCCC-CCeEEEEcccccccCCCCcCC
Confidence 457888888754444 5889999999999999998765321 012345555533332 344433322 11111 0
Q ss_pred CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeec
Q psy3774 221 EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASEN 284 (963)
Q Consensus 221 ~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN 284 (963)
..|. -+-|+|.+ .+++|.|+.+.+++++.+.+++-+|.-++-..|-
T Consensus 79 ~~Pf~~~~~~~~i~GrG~~------------------D~Kg~~a~~l~a~~~l~~~~~~~~v~~~~~~~EE 131 (364)
T TIGR01892 79 RDPFRLTEKDGRLYGRGTC------------------DMKGFLACALAAAPDLAAEQLKKPLHLALTADEE 131 (364)
T ss_pred CCCCcceeeCCEEEecCcc------------------ccchHHHHHHHHHHHHHhcCcCCCEEEEEEeccc
Confidence 1221 23333322 2356899999999999887777666665555554
No 46
>PRK07318 dipeptidase PepV; Reviewed
Probab=79.28 E-value=21 Score=42.52 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=71.8
Q ss_pred HHHHHHHHHhccCCCCCCC------------hHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEE
Q psy3774 640 SKGIELTKNLGNLSANICT------------PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLI 707 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~lt------------P~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli 707 (963)
.+.+.+.++|++.|+-.-. ....++...+.++++|+++++++ +.-+. +..|+ .+|+++
T Consensus 14 ~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~-------n~~~~--~~~~~-~~~~l~ 83 (466)
T PRK07318 14 DDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD-------NYAGH--IEYGE-GEEVLG 83 (466)
T ss_pred HHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec-------Cccce--EEECC-CCCEEE
Confidence 4567888999999985432 23588888899999999999876 11111 11132 346666
Q ss_pred EEEEcC---CCC-C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEE
Q psy3774 708 IIKYMN---GKF-K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNII 773 (963)
Q Consensus 708 ~l~Y~g---~~~-~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~ 773 (963)
...+.- .+. + ..|. -|-|+|.+ +| .+|.|+++.+|+++.+.+. +-+|.
T Consensus 84 l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~---------------Dm---Kgg~aa~l~Al~~l~~~g~~~~~~i~ 145 (466)
T PRK07318 84 ILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTS---------------DD---KGPTMAAYYALKIIKELGLPLSKKVR 145 (466)
T ss_pred EEEecCCCCCCCCCCCCCcceEEECCEEEEcccc---------------cC---cHHHHHHHHHHHHHHHcCCCCCccEE
Confidence 655532 111 1 1222 35566652 23 3589999999999988765 45777
Q ss_pred EEEEeecc
Q psy3774 774 GVIVASEN 781 (963)
Q Consensus 774 ~vi~~~EN 781 (963)
.++-.-|=
T Consensus 146 l~~~~DEE 153 (466)
T PRK07318 146 FIVGTDEE 153 (466)
T ss_pred EEEEcccc
Confidence 77766654
No 47
>PRK09133 hypothetical protein; Provisional
Probab=78.73 E-value=16 Score=43.56 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=75.1
Q ss_pred HHHHHHHHhccCCCCC--CCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCC-eEEEEEEccCCCC
Q psy3774 144 KGIELTKNLGNLSANI--CTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPP-KLIIIKYMNGKFK 220 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~--ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p-~li~l~y~~~~~~ 220 (963)
+.+.+.++|+..|+-. -.-...+++..+.++++|++++.+...+. ..+.+.+++.=+|+...| .++.-+|.--+..
T Consensus 38 ~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~-~~~~~nli~~~~g~~~~~~lll~~H~DtVp~~ 116 (472)
T PRK09133 38 AARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGP-YPRKGNLVARLRGTDPKKPILLLAHMDVVEAK 116 (472)
T ss_pred HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccC-CCCceeEEEEecCCCCCCcEEEEeecccCCCC
Confidence 4467888999998864 34567889999999999997643221111 124567777756665434 4444444322110
Q ss_pred -----CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCcEEEEEEEeeec
Q psy3774 221 -----EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 284 (963)
Q Consensus 221 -----~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~vnv~~~~~~~EN 284 (963)
..|. -+.|+|.+ +| ++|.|+.+.+++++.+.+ ++.+|+-++-..|=
T Consensus 117 ~~~W~~dPf~~~~~dg~iyGRGa~---------------D~---Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE 176 (472)
T PRK09133 117 REDWTRDPFKLVEENGYFYGRGTS---------------DD---KADAAIWVATLIRLKREGFKPKRDIILALTGDEE 176 (472)
T ss_pred hhcCCCCCCcceEeCCEEEecCcc---------------cc---hHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccc
Confidence 1121 34566631 22 468888899999998875 45677777766654
No 48
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=78.51 E-value=15 Score=41.75 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=70.4
Q ss_pred HHHHhccCCCCCCCh-HHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEc---CCCCC---
Q psy3774 645 LTKNLGNLSANICTP-TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM---NGKFK--- 717 (963)
Q Consensus 645 ~aRdL~n~P~N~ltP-~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~---g~~~~--- 717 (963)
+.++|+..|+-.-.+ ..+++..++.++++|+++++.+-.+ ..+-+.+++.=.|+. +|.++...+. |..+.
T Consensus 2 ~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~--~~~~~nl~~~~~~~~-~~~i~l~~H~Dtvp~~~~~w~ 78 (364)
T TIGR01892 2 ILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPD--GAEKSNLVAVIGPSG-AGGLALSGHTDVVPYDDAAWT 78 (364)
T ss_pred hHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCC--CCccccEEEEecCCC-CCeEEEEcccccccCCCCcCC
Confidence 467888888854334 5788999999999999998875321 012345666544432 3444433322 11111
Q ss_pred CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeecc
Q psy3774 718 EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASEN 781 (963)
Q Consensus 718 ~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~EN 781 (963)
..|. -+-|+|.+ +| .+|.|+.+.+++++.+.+++-+|.-++-..|-
T Consensus 79 ~~Pf~~~~~~~~i~GrG~~---------------D~---Kg~~a~~l~a~~~l~~~~~~~~v~~~~~~~EE 131 (364)
T TIGR01892 79 RDPFRLTEKDGRLYGRGTC---------------DM---KGFLACALAAAPDLAAEQLKKPLHLALTADEE 131 (364)
T ss_pred CCCCcceeeCCEEEecCcc---------------cc---chHHHHHHHHHHHHHhcCcCCCEEEEEEeccc
Confidence 1222 24444442 23 35899999999999888777777766666664
No 49
>PRK08554 peptidase; Reviewed
Probab=77.91 E-value=22 Score=42.11 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=70.4
Q ss_pred HHHHHHHhccCCCCCCCh------HHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEc---
Q psy3774 642 GIELTKNLGNLSANICTP------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM--- 712 (963)
Q Consensus 642 g~~~aRdL~n~P~N~ltP------~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~--- 712 (963)
.+.+.++|++.|+-.-.+ ...++..++.+++.|+++++++.. +-..+.+.- |+. +|+++..-+.
T Consensus 3 ~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~-----~~~~l~~~~-~~~-~~~l~l~gH~DtV 75 (438)
T PRK08554 3 VLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKD-----GYYAVYGEI-GEG-KPKLLFMAHFDVV 75 (438)
T ss_pred HHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecC-----CceEEEEEe-CCC-CCEEEEEeccccC
Confidence 466778999998833222 567888888889999999987653 323444442 333 2444443332
Q ss_pred CCC--C-CCCcEE-------EeccCeeeccCCCCCCCCCChhhhcccc-hhhhHHHHHHHHHHhcCCCcEEEEEEEeecc
Q psy3774 713 NGK--F-KEAPIV-------LVGKGVTFDTGGISIKPSYSMDEMKYDM-CGAASILGTLYAISEMNLELNIIGVIVASEN 781 (963)
Q Consensus 713 g~~--~-~~~~i~-------LVGKGiTFDsGGislKp~~~M~~MK~DM-~GAAaVlga~~aia~l~l~vnV~~vi~~~EN 781 (963)
|.. . ...|.. |-|+|+ +|| +|.|+.+.+++++.+.+++.+|.-++-.-|-
T Consensus 76 p~~~~~w~~~Pf~~~~~~g~lyGrG~-------------------~DmKgg~aa~l~A~~~l~~~~~~~~i~l~~~~dEE 136 (438)
T PRK08554 76 PVNPEEWNTEPFKLTVKGDKAYGRGS-------------------ADDKGNVASVMLALKELSKEPLNGKVIFAFTGDEE 136 (438)
T ss_pred CCCccccccCCceeEEECCEEEECCc-------------------ccchHHHHHHHHHHHHHHhcCCCCCEEEEEEcccc
Confidence 111 1 112332 444444 233 4677789999999887777788777777765
No 50
>PRK08652 acetylornithine deacetylase; Provisional
Probab=77.89 E-value=20 Score=40.36 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=69.3
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCCCCCCCc
Q psy3774 641 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAP 720 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~~~~~~~ 720 (963)
+.+.+.++|+..|+---.-...++...+.++++|+++++.... +...+++ |+ .|+-++.-+|.--+...++
T Consensus 3 ~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~-----~~~~~~~---~~-~~~i~l~~H~D~vp~~~~~ 73 (347)
T PRK08652 3 RAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDG-----EVINIVV---NS-KAELFVEVHYDTVPVRAEF 73 (347)
T ss_pred hHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecC-----ceeEEEc---CC-CCEEEEEccccccCCCCCC
Confidence 3468899999999866666778888889999999999875432 1334444 32 2343444444322222222
Q ss_pred EEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeeccC
Q psy3774 721 IVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENM 782 (963)
Q Consensus 721 i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~ENm 782 (963)
. .+ ||.-..+ +..+| .+|.|+++.+++++.+...+-+|+-+.-..|-.
T Consensus 74 ~--------~~-~g~iyGr--G~~D~---Kg~~a~~l~a~~~l~~~~~~~~v~~~~~~dEE~ 121 (347)
T PRK08652 74 F--------VD-GVYVYGT--GACDA---KGGVAAILLALEELGKEFEDLNVGIAFVSDEEE 121 (347)
T ss_pred E--------EE-CCEEEec--cchhh---hHHHHHHHHHHHHHhhcccCCCEEEEEecCccc
Confidence 1 11 2211111 12233 467889999999888765544555555555653
No 51
>PRK07473 carboxypeptidase; Provisional
Probab=77.85 E-value=36 Score=39.42 Aligned_cols=125 Identities=10% Similarity=0.031 Sum_probs=71.0
Q ss_pred HHHHHHHHHhccCCCCCCCHH---HHHHHHHHhhhcCCCeEEEeCHHHHHHhcC-CeEeeecCCC-CCCCeEEEE-EEc-
Q psy3774 143 SKGIELTKNLGNLSANICTPT---YLENISKKLSFDYKMDIEIINREQMQRLKM-GSLLSVTHGS-SEPPKLIII-KYM- 215 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP~---~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm-~~~laVg~gS-~~~p~li~l-~y~- 215 (963)
.+.+.+.++|++.|+..-++. .++++..+.++++|++++++.... +. +.+++.-.|+ ...|.|+.. +|.
T Consensus 11 ~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lll~gH~Dt 86 (376)
T PRK07473 11 EAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQ----GFGDCVRARFPHPRQGEPGILIAGHMDT 86 (376)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCC----CCCCeEEEEeCCCCCCCCeEEEEecCCC
Confidence 355688899999999877776 556666778888999999864322 33 2444443332 234544433 333
Q ss_pred --cCCCC-CCcEEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEEEEEeeec
Q psy3774 216 --NGKFK-EAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 284 (963)
Q Consensus 216 --~~~~~-~~~i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~~~~~~EN 284 (963)
|.+.. ..|.... .|..|=-|- .+ +++|.|+.+.+++++.+.+. +.+|+-++-.-|=
T Consensus 87 V~~~~~~~~~p~~~~-~g~lyGrG~---------~D---~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE 147 (376)
T PRK07473 87 VHPVGTLEKLPWRRE-GNKCYGPGI---------LD---MKGGNYLALEAIRQLARAGITTPLPITVLFTPDEE 147 (376)
T ss_pred CCCCCCccCCCeEEE-CCEEEcCch---------hh---chHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcc
Confidence 11111 1233211 133331111 22 35789999999999988763 4565554444443
No 52
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=77.16 E-value=25 Score=41.10 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=75.8
Q ss_pred HHHHHHHHHhccCCCCC---CChHHHHHHHHHhhhhCCCeEEEeCHHHHHh----cCCCeEeeecCCCCCCCeEEEEEEc
Q psy3774 640 SKGIELTKNLGNLSANI---CTPTYLENISKKLSFDYKMDIEIINREQMQR----LKMGSLLSVTHGSSEPPKLIIIKYM 712 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~---ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~----~gmg~~laVg~GS~~~Prli~l~Y~ 712 (963)
-+.+.+-|+|++.|+-. ..-...++..+++++++|+++++++...... .+-..++++=+|+..+|.++...+.
T Consensus 14 ~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~~~~i~l~gH~ 93 (427)
T PRK13013 14 DDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARDGDCVHFNSHH 93 (427)
T ss_pred HHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCCCCEEEEEecc
Confidence 35688999999999853 2225788888899999999999875321000 0113566665565444554443332
Q ss_pred C---CCC-C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEe
Q psy3774 713 N---GKF-K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVA 778 (963)
Q Consensus 713 g---~~~-~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~ 778 (963)
- ..+ + ..|. -|-|+|. .+| .+|.|+.+.+++++.+.+ ++.+|+-+.-.
T Consensus 94 DvVp~~~~W~~~Pf~~~~~dg~iyGrGa---------------~D~---Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~ 155 (427)
T PRK13013 94 DVVEVGHGWTRDPFGGEVKDGRIYGRGA---------------CDM---KGGLAASIIAAEAFLAVYPDFAGSIEISGTA 155 (427)
T ss_pred ccCCCCCCCcCCCCCceEECCEEEeccc---------------ccc---chHHHHHHHHHHHHHHhCCCCCccEEEEEEe
Confidence 1 110 0 1121 1334443 223 357889999999998875 46788888777
Q ss_pred eccC
Q psy3774 779 SENM 782 (963)
Q Consensus 779 ~ENm 782 (963)
.|-.
T Consensus 156 dEE~ 159 (427)
T PRK13013 156 DEES 159 (427)
T ss_pred cccc
Confidence 7764
No 53
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=77.12 E-value=30 Score=39.29 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=62.8
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCC-CC-CC
Q psy3774 641 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNG-KF-KE 718 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~-~~-~~ 718 (963)
+.+.+.++|++.|+.--.....++...+.+++.|+++++.+.. +.+ . .| +|+++..-+.-- +. ..
T Consensus 11 ~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~-------~~~-~--~g---~~~lll~gH~DtVp~~~~ 77 (346)
T PRK00466 11 KAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEILPDS-------NSF-I--LG---EGDILLASHVDTVPGYIE 77 (346)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEecCC-------CcE-e--cC---CCeEEEEeccccCCCCCC
Confidence 5677889999999977778899999999999999999986521 222 2 23 244444333211 10 01
Q ss_pred CcE---EEeccCeeeccCCCCCCCCCChhhhcccch-hhhHHHHHHHHHHhcCCCc
Q psy3774 719 API---VLVGKGVTFDTGGISIKPSYSMDEMKYDMC-GAASILGTLYAISEMNLEL 770 (963)
Q Consensus 719 ~~i---~LVGKGiTFDsGGislKp~~~M~~MK~DM~-GAAaVlga~~aia~l~l~v 770 (963)
.++ -+-|.|. +||= |-|+.+.++.++.+.+.++
T Consensus 78 ~~~~~g~iyGrG~-------------------~DmKgg~aa~l~a~~~l~~~~~~i 114 (346)
T PRK00466 78 PKIEGEVIYGRGA-------------------VDAKGPLISMIIAAWLLNEKGIKV 114 (346)
T ss_pred ceeeCCEEEecCc-------------------cccchHHHHHHHHHHHHHHcCCCE
Confidence 111 2344444 3444 5588899999998888775
No 54
>PRK07318 dipeptidase PepV; Reviewed
Probab=77.09 E-value=26 Score=41.67 Aligned_cols=114 Identities=13% Similarity=0.078 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCCCCCCC------------HHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEE
Q psy3774 143 SKGIELTKNLGNLSANICT------------PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLI 210 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~lt------------P~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li 210 (963)
.+.+.+.++|+..|+-.-. ....+++..+.++++|+++++++ ...+. +..|+ .+|+++
T Consensus 14 ~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~-------n~~~~--~~~~~-~~~~l~ 83 (466)
T PRK07318 14 DDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD-------NYAGH--IEYGE-GEEVLG 83 (466)
T ss_pred HHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec-------Cccce--EEECC-CCCEEE
Confidence 4567888999999884432 24688888999999999999875 11111 11132 235666
Q ss_pred EEEEccC-C--C-C-CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEE
Q psy3774 211 IIKYMNG-K--F-K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNII 276 (963)
Q Consensus 211 ~l~y~~~-~--~-~-~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~ 276 (963)
...+--- + + . ..|. -|-|+|.+ .|++|.|+++.+|+++.+.+. +-+|.
T Consensus 84 l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~------------------DmKgg~aa~l~Al~~l~~~g~~~~~~i~ 145 (466)
T PRK07318 84 ILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTS------------------DDKGPTMAAYYALKIIKELGLPLSKKVR 145 (466)
T ss_pred EEEecCCCCCCCCCCCCCcceEEECCEEEEcccc------------------cCcHHHHHHHHHHHHHHHcCCCCCccEE
Confidence 5554321 1 0 1 1222 34455532 235789999999999988765 35676
Q ss_pred EEEEeeec
Q psy3774 277 GVIVASEN 284 (963)
Q Consensus 277 ~~~~~~EN 284 (963)
.++-.-|=
T Consensus 146 l~~~~DEE 153 (466)
T PRK07318 146 FIVGTDEE 153 (466)
T ss_pred EEEEcccc
Confidence 66655554
No 55
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=76.96 E-value=24 Score=39.81 Aligned_cols=105 Identities=17% Similarity=0.261 Sum_probs=62.0
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCCCCCCCc--E-
Q psy3774 645 LTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAP--I- 721 (963)
Q Consensus 645 ~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~~~~~~~--i- 721 (963)
+.++|++.|+-.-.-...++..++.++++|++++ ++ .++.+++. .|+.. |+++...+.-.-....+ +
T Consensus 2 ~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~-~~-------~~~~~~~~-~~~~~-~~i~~~~H~D~vp~~~~~~~~ 71 (336)
T TIGR01902 2 LLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLI-ID-------DAGNFILG-KGDGH-KKILLAGHVDTVPGYIPVKIE 71 (336)
T ss_pred hHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEE-EC-------CCCcEEEE-eCCCC-ceEEEEccccccCCCcccEEe
Confidence 4688999998766778889999999999999983 33 24555553 34443 55444333221111000 0
Q ss_pred --EEeccCeeeccCCCCCCCCCChhhhccc-chhhhHHHHHHHHHHhcCCCcEEEEEEEeec
Q psy3774 722 --VLVGKGVTFDTGGISIKPSYSMDEMKYD-MCGAASILGTLYAISEMNLELNIIGVIVASE 780 (963)
Q Consensus 722 --~LVGKGiTFDsGGislKp~~~M~~MK~D-M~GAAaVlga~~aia~l~l~vnV~~vi~~~E 780 (963)
-+-|+|. .| ++|.|+.+.+++++.+.+. +|+-+.-..|
T Consensus 72 ~g~i~GrG~-------------------~D~Kg~~aa~l~a~~~l~~~~~--~i~~~~~~dE 112 (336)
T TIGR01902 72 GGLLYGRGA-------------------VDAKGPLIAMIFATWLLNEKGI--KVIVSGLVDE 112 (336)
T ss_pred CCEEEEecc-------------------cCCCcHHHHHHHHHHHHHhCCC--cEEEEEEeCc
Confidence 1233333 33 4678888999998876654 4443333333
No 56
>PRK07338 hypothetical protein; Provisional
Probab=76.73 E-value=27 Score=40.40 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=72.3
Q ss_pred HHHHHHHHHhccCCCCCCChH---HHHHHHHHhhhhCCCeEEEeCHHH---HHhcCC-------CeEeeecCCCCCCCeE
Q psy3774 640 SKGIELTKNLGNLSANICTPT---YLENISKKLSFDYKMDIEIINREQ---MQRLKM-------GSLLSVTHGSSEPPKL 706 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~---~la~~a~~l~~~~g~~v~V~d~~~---l~~~gm-------g~~laVg~GS~~~Prl 706 (963)
.+-+.+-++|++.|+-.-++. ..++..++.+++.|+++++++... +...|. +.+++.-.|+.. |++
T Consensus 17 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~~~~~-~~l 95 (402)
T PRK07338 17 APMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPALHVSVRPEAP-RQV 95 (402)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeEEEEECCCCC-ccE
Confidence 344577888999986554553 577778888888999999876321 100011 346666555443 344
Q ss_pred EEEEEcCC-CCCCCc------E---EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEE
Q psy3774 707 IIIKYMNG-KFKEAP------I---VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIG 774 (963)
Q Consensus 707 i~l~Y~g~-~~~~~~------i---~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~ 774 (963)
+..-+.-- +....| + -|-|.|. -+||. |.|+.+.+++++.+.+ ++.+|.-
T Consensus 96 ll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~---------------~DmKg---g~aa~l~a~~~l~~~~~~~~~~i~~ 157 (402)
T PRK07338 96 LLTGHMDTVFPADHPFQTLSWLDDGTLNGPGV---------------ADMKG---GIVVMLAALLAFERSPLADKLGYDV 157 (402)
T ss_pred EEEeecCccCCCCCcccCCeEeeCCEEECCcH---------------HhhhH---HHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 44333211 000011 1 2344443 33443 7889999999998865 4567777
Q ss_pred EEEeeccC
Q psy3774 775 VIVASENM 782 (963)
Q Consensus 775 vi~~~ENm 782 (963)
++-..|=.
T Consensus 158 ~~~~dEE~ 165 (402)
T PRK07338 158 LINPDEEI 165 (402)
T ss_pred EEECCccc
Confidence 77777764
No 57
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=74.70 E-value=36 Score=38.52 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcC-CCeEEE
Q psy3774 143 SKGIELTKNLGNLSANICTPTYLENISKKLSFDY-KMDIEI 182 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~-gv~v~v 182 (963)
.+.+++.++|++.|+-.-+-...+++.++.++++ |++++.
T Consensus 7 ~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~ 47 (352)
T PRK13007 7 ADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIR 47 (352)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEe
Confidence 3567899999999998777788999999998985 877653
No 58
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=73.65 E-value=37 Score=38.58 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=36.1
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeC
Q psy3774 144 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIIN 184 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~ 184 (963)
+.+.+.++|+..|+..-+....+++.++.+++.|+++++.+
T Consensus 11 ~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~ 51 (346)
T PRK00466 11 KAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEILP 51 (346)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 66788899999999777889999999999999999999765
No 59
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=72.99 E-value=37 Score=39.35 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=71.6
Q ss_pred HHHHHHHHhccCCCCCCC--hHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCC-CCeEEEEEE-c--CC
Q psy3774 641 KGIELTKNLGNLSANICT--PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE-PPKLIIIKY-M--NG 714 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~lt--P~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~-~Prli~l~Y-~--g~ 714 (963)
+.+.+-++|++.|+-.=. -...++..++.++++|++++.++.. .|-..+++--+|+.. .|+++...+ . |.
T Consensus 10 ~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~----~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~ 85 (400)
T TIGR01880 10 IAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFV----PGKPVVVLTWPGSNPELPSILLNSHTDVVPV 85 (400)
T ss_pred HHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEec----CCceeEEEEEecCCCCCCeEEEEcccccCCC
Confidence 446788899999885322 2468888889999999999876643 133344443345432 244443333 2 11
Q ss_pred CCC---CCcEE--------EeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeecc
Q psy3774 715 KFK---EAPIV--------LVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 781 (963)
Q Consensus 715 ~~~---~~~i~--------LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~EN 781 (963)
+.. ..|.. |-|.|. .+|| +|.|+.+.+++++.+.+ ++.+|+-+.-.-|=
T Consensus 86 ~~~~W~~~Pf~~~~~~dg~iyGrG~---------------~D~K---~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE 147 (400)
T TIGR01880 86 FREHWTHPPFSAFKDEDGNIYARGA---------------QDMK---CVGVQYLEAVRNLKASGFKFKRTIHISFVPDEE 147 (400)
T ss_pred CcccCccCCccceecCCCeEEEccc---------------cccc---HHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcc
Confidence 111 12221 333332 3454 47899999999999876 45678877777664
No 60
>PRK00431 RNase III inhibitor; Provisional
Probab=72.57 E-value=69 Score=33.11 Aligned_cols=147 Identities=10% Similarity=0.089 Sum_probs=83.4
Q ss_pred eeEeeecccccccccccCCCEEEEEEecCCCccc-cccccC--chH----HHHHHHHcCCCCCCCCCEEEEcccCCCCcc
Q psy3774 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSS-IVKDID--KYG----EITNILKSGDLNEKLGSTLLLRNIQKINAK 530 (963)
Q Consensus 458 M~f~i~~~~~~~~~~~~~~d~lVv~v~e~~~l~~-~~~~ld--~~g----~l~~~i~~~~f~gk~ge~~~l~~~~~~~~~ 530 (963)
|+|.+. ..+..+.++|++|-+......... ....+. .+. ...+.++.. -.-..|+.+.... ...+.+
T Consensus 3 ~~i~i~----~Gdi~~~~~daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~~-~~l~~G~~~~T~~-~~l~~~ 76 (177)
T PRK00431 3 MRIEVV----QGDITELEVDAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQ-GPCPTGEAVITSA-GRLPAK 76 (177)
T ss_pred cEEEEE----eCCcccccCCEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCeEEEecC-CCCCCC
Confidence 567777 677888899999998765433221 111111 122 223333322 2334677776653 345667
Q ss_pred EEEEE-E--cCCCCCcCCHHHHHHHHHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHHHhcCcccCCCccCCC
Q psy3774 531 RILLV-N--LGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKK 607 (963)
Q Consensus 531 ~vllv-G--LG~~~~~~~~~~~r~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~l~~Y~f~~yk~~~ 607 (963)
+|+-+ | ... ......+.++++...+.+.+.+.+++++++.+-.........+..++.+.+.+. +| ..+.
T Consensus 77 ~IiH~v~P~~~~-~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~----~f---~~~~ 148 (177)
T PRK00431 77 YVIHTVGPVWRG-GEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVR----EF---LTRH 148 (177)
T ss_pred EEEEecCCeecC-CCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHH----HH---HhcC
Confidence 66655 1 111 111246788999999999999999999888654433344444455555555443 33 1111
Q ss_pred CCCccCceEEEEEec
Q psy3774 608 KPIKINIKKIIFALD 622 (963)
Q Consensus 608 ~~~~~~l~~l~l~~~ 622 (963)
..+++|.|+..
T Consensus 149 ----~~l~~I~~v~~ 159 (177)
T PRK00431 149 ----KSPEEVYFVCY 159 (177)
T ss_pred ----CCcCEEEEEEC
Confidence 24677888763
No 61
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=71.38 E-value=41 Score=39.11 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=66.4
Q ss_pred HHHHHHHhccCCCCC------C--C--hHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCC-CCeEEEEE
Q psy3774 642 GIELTKNLGNLSANI------C--T--PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE-PPKLIIIK 710 (963)
Q Consensus 642 g~~~aRdL~n~P~N~------l--t--P~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~-~Prli~l~ 710 (963)
.+.+-++|++.|++. . + -...++...+.++++|+++++. +++.+.++-.|+.. .|+++..-
T Consensus 12 ~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~--------~~~n~~a~~~g~~~~~~~l~l~~ 83 (412)
T PRK12893 12 LWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD--------AIGNLFGRRAGTDPDAPPVLIGS 83 (412)
T ss_pred HHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc--------CCCcEEEEeCCCCCCCCEEEEEe
Confidence 456677788877421 1 1 1455677888888899999873 24466666666542 35555544
Q ss_pred EcCCCCCCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEEEEEeecc
Q psy3774 711 YMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 781 (963)
Q Consensus 711 Y~g~~~~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~vi~~~EN 781 (963)
+.-.- | + || ...| .+|-|+.+.+++++.+.+. +-+|+-+.-..|-
T Consensus 84 H~DtV----p---~--------~g--------~~dg---k~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE 130 (412)
T PRK12893 84 HLDTQ----P---T--------GG--------RFDG---ALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEE 130 (412)
T ss_pred cccCC----C---C--------CC--------cccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccc
Confidence 43211 1 1 22 1123 3689999999999998764 5577777766666
No 62
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=71.05 E-value=32 Score=39.84 Aligned_cols=119 Identities=12% Similarity=0.086 Sum_probs=70.6
Q ss_pred HHHHHHHHhccCCCCCCC--HHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCC--CCeEEEEEEccCCC
Q psy3774 144 KGIELTKNLGNLSANICT--PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE--PPKLIIIKYMNGKF 219 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~lt--P~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~--~p~li~l~y~~~~~ 219 (963)
+.+.+-++|++.|+-.-. -...++..++.++++|++++.++.. .|-..+++--+|+.. |+.++.-++.--+.
T Consensus 10 ~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~----~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~ 85 (400)
T TIGR01880 10 IAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFV----PGKPVVVLTWPGSNPELPSILLNSHTDVVPV 85 (400)
T ss_pred HHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEec----CCceeEEEEEecCCCCCCeEEEEcccccCCC
Confidence 445788889988885322 2578999999999999998876542 133344443345432 34444444432221
Q ss_pred --C---CCcEE--------EcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEEEEEeeec
Q psy3774 220 --K---EAPIV--------LVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 284 (963)
Q Consensus 220 --~---~~~i~--------lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~~~~~~EN 284 (963)
. ..|.. +-|.| ..+| ++|.|+++.+++++.+.+. +-+|+-+...-|=
T Consensus 86 ~~~~W~~~Pf~~~~~~dg~iyGrG---------------~~D~---K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE 147 (400)
T TIGR01880 86 FREHWTHPPFSAFKDEDGNIYARG---------------AQDM---KCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEE 147 (400)
T ss_pred CcccCccCCccceecCCCeEEEcc---------------cccc---cHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcc
Confidence 0 12221 22333 1233 4688999999999998764 5677776666654
No 63
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=70.96 E-value=53 Score=37.14 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=64.9
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhC-CCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCC-CCC
Q psy3774 640 SKGIELTKNLGNLSANICTPTYLENISKKLSFDY-KMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNG-KFK 717 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~-g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~-~~~ 717 (963)
.+-+++.++|++.|+---.-...++..++..+++ |++++.. + +.+.+.- ++..+|+++...+.-. +..
T Consensus 7 ~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~~--------~-~~~~~~~-~~~~~~~i~l~~H~Dtvp~~ 76 (352)
T PRK13007 7 ADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIRH--------G-NSVVART-DLGRPSRVVLAGHLDTVPVA 76 (352)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEec--------C-CeEEEEc-cCCCCCeEEEEccccccCCC
Confidence 3567899999999998777778888888888885 8776532 1 3354443 2233455443332211 100
Q ss_pred --CCc----EEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeeccCC
Q psy3774 718 --EAP----IVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENML 783 (963)
Q Consensus 718 --~~~----i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~ENm~ 783 (963)
-++ =.+-|+|.+ +| .+|.|+.+.+++++.+ ++.+|+-+.-.+|=..
T Consensus 77 ~~~~~~~~~g~i~GrG~~---------------D~---Kg~~a~~l~a~~~l~~--~~~~i~~~~~~~EE~~ 128 (352)
T PRK13007 77 DNLPSRREGDRLYGCGAS---------------DM---KSGLAVMLHLAATLAE--PAHDLTLVFYDCEEVE 128 (352)
T ss_pred CCCCcceeCCEEEccCcc---------------cc---cHHHHHHHHHHHHhhc--cCCCeEEEEEeccccc
Confidence 000 012333331 22 4667888888888844 4556655554554433
No 64
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=70.60 E-value=41 Score=37.94 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=56.8
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEE-EEccCCCCCCc-E-
Q psy3774 148 LTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII-KYMNGKFKEAP-I- 224 (963)
Q Consensus 148 ~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l-~y~~~~~~~~~-i- 224 (963)
+.++|++.|+-.-+-...+++.++.++++|++++ ++ +++.+++. .|+.. |+++.. +|.--+..-.+ +
T Consensus 2 ~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~-~~-------~~~~~~~~-~~~~~-~~i~~~~H~D~vp~~~~~~~~ 71 (336)
T TIGR01902 2 LLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLI-ID-------DAGNFILG-KGDGH-KKILLAGHVDTVPGYIPVKIE 71 (336)
T ss_pred hHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEE-EC-------CCCcEEEE-eCCCC-ceEEEEccccccCCCcccEEe
Confidence 4678889988766778899999999999999983 33 23455543 35444 444443 33322110000 0
Q ss_pred --EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC
Q psy3774 225 --VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN 270 (963)
Q Consensus 225 --~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~ 270 (963)
-+-|+|. -.+++|.|+++.+++++.+.+
T Consensus 72 ~g~i~GrG~------------------~D~Kg~~aa~l~a~~~l~~~~ 101 (336)
T TIGR01902 72 GGLLYGRGA------------------VDAKGPLIAMIFATWLLNEKG 101 (336)
T ss_pred CCEEEEecc------------------cCCCcHHHHHHHHHHHHHhCC
Confidence 1223331 123578888899988886554
No 65
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=70.27 E-value=39 Score=38.59 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=67.1
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEE-EEccCCCC----
Q psy3774 146 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII-KYMNGKFK---- 220 (963)
Q Consensus 146 ~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l-~y~~~~~~---- 220 (963)
+.+.++|++.|+-.-.-...+++.++.++++|+++++..-. +.+.+++. .|+ ..|.++.. ++.--+..
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~-----~~~~~~~~-~g~-~~~~i~~~~H~DtVp~~~~~~ 74 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFG-----DTKNLWAT-RGT-GEPVLAFAGHTDVVPAGPEEQ 74 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecC-----CCceEEEE-ecC-CCcEEEEEccccccCCCCccc
Confidence 35778899999877776778899999999999999877421 23444444 344 23444443 33221110
Q ss_pred --CCcE-------EEcccceEEecCCCCCCCCCCccccccch-hhHHHHHHHHHHHHhcC--CCcEEEEEEEeeec
Q psy3774 221 --EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDM-CGAASILGTLYAISEMN--LELNIIGVIVASEN 284 (963)
Q Consensus 221 --~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm-~GaAaV~g~~~a~a~l~--l~vnv~~~~~~~EN 284 (963)
..|. .+-|.|. .|| +|.|+.+.++..+.+.+ ++-+|+-+..-.|-
T Consensus 75 W~~~p~~~~~~dg~~yGrG~-------------------~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE 131 (370)
T TIGR01246 75 WSSPPFEPVERDGKLYGRGA-------------------ADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEE 131 (370)
T ss_pred cccCCCCcEEECCEEEeccc-------------------ccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccc
Confidence 0111 1223331 344 66788888887776654 45577766666664
No 66
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=70.24 E-value=43 Score=38.24 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=69.3
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcC---CCC-C-
Q psy3774 643 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN---GKF-K- 717 (963)
Q Consensus 643 ~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g---~~~-~- 717 (963)
+.+.++|++.|+---.-...++..++.++++|+++++++-. +.+.+.+. .|+ ..|.++...+.- ..+ +
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~-----~~~~~~~~-~g~-~~~~i~~~~H~DtVp~~~~~~ 74 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFG-----DTKNLWAT-RGT-GEPVLAFAGHTDVVPAGPEEQ 74 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecC-----CCceEEEE-ecC-CCcEEEEEccccccCCCCccc
Confidence 45788999999877666677888889999999999887421 23445554 344 235444443321 110 0
Q ss_pred --CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccc-hhhhHHHHHHHHHHhcC--CCcEEEEEEEeeccC
Q psy3774 718 --EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDM-CGAASILGTLYAISEMN--LELNIIGVIVASENM 782 (963)
Q Consensus 718 --~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM-~GAAaVlga~~aia~l~--l~vnV~~vi~~~ENm 782 (963)
..|. .+-|.|. .|| +|.++.+.++..+.+.+ ++.+|.-+.-..|-.
T Consensus 75 W~~~p~~~~~~dg~~yGrG~-------------------~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~ 132 (370)
T TIGR01246 75 WSSPPFEPVERDGKLYGRGA-------------------ADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEG 132 (370)
T ss_pred cccCCCCcEEECCEEEeccc-------------------ccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEecccc
Confidence 0111 1333333 355 56677788887776654 466888777777753
No 67
>PRK07079 hypothetical protein; Provisional
Probab=69.36 E-value=61 Score=38.61 Aligned_cols=121 Identities=14% Similarity=0.047 Sum_probs=70.0
Q ss_pred HHHHHHHHhccCCCCCCCh---HHHHHH----HHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcC
Q psy3774 641 KGIELTKNLGNLSANICTP---TYLENI----SKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN 713 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~ltP---~~la~~----a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g 713 (963)
+.+.+.++|+..|+-.=.+ ..+++. ..+++++.|++|++++... ..+...++++=.|+...|+++..-+.-
T Consensus 18 ~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~--~~~~~~vva~~~~~~~~~~lll~gH~D 95 (469)
T PRK07079 18 AFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPV--AGGGPFLIAERIEDDALPTVLIYGHGD 95 (469)
T ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCC--CCCCCEEEEEeCCCCCCCEEEEEcccC
Confidence 5789999999999853222 134443 3457888999999987421 124455666633433335554433321
Q ss_pred ---CCC--CC---Cc----E---EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHh---cCCCcEEEEE
Q psy3774 714 ---GKF--KE---AP----I---VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISE---MNLELNIIGV 775 (963)
Q Consensus 714 ---~~~--~~---~~----i---~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~---l~l~vnV~~v 775 (963)
... ++ .| + -|.|+|. .+|| +|.|+.+.+++++.+ .+++.+|+-+
T Consensus 96 vVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa---------------~DmK---gg~aa~l~A~~~l~~~~~~~~~~~i~~~ 157 (469)
T PRK07079 96 VVRGYDEQWREGLSPWTLTEEGDRWYGRGT---------------ADNK---GQHTINLAALEQVLAARGGRLGFNVKLL 157 (469)
T ss_pred CCCCChHHhcccCCCCcccccCCEEEEEec---------------cCCc---HHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 110 11 11 1 3566665 2343 566888888888754 3567788766
Q ss_pred EEeecc
Q psy3774 776 IVASEN 781 (963)
Q Consensus 776 i~~~EN 781 (963)
+-.-|=
T Consensus 158 ~~~dEE 163 (469)
T PRK07079 158 IEMGEE 163 (469)
T ss_pred EECccc
Confidence 666553
No 68
>PLN02280 IAA-amino acid hydrolase
Probab=68.84 E-value=67 Score=38.78 Aligned_cols=127 Identities=9% Similarity=0.024 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEE-EEcc
Q psy3774 138 YGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII-KYMN 216 (963)
Q Consensus 138 ~~~~ia~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l-~y~~ 216 (963)
+...+..-+.+.|+|...|.--..=...++.+.+.++++|+++++.. +-.++.++- |+..+|.++.. ++.-
T Consensus 92 ~~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~~~-------~~~~vva~~-g~~~~~~I~l~gh~Da 163 (478)
T PLN02280 92 QPDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRYPL-------AKTGIRAWI-GTGGPPFVAVRADMDA 163 (478)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEecC-------CCCEEEEEE-CCCCCCEEEEEEecCC
Confidence 34556777889999999996444457788888899999999988742 234556653 43334543322 2221
Q ss_pred CCCCCCcEEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCcEEEEEEEeeec
Q psy3774 217 GKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 284 (963)
Q Consensus 217 ~~~~~~~i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~vnv~~~~~~~EN 284 (963)
-+..+ .-+.+||+ +-..-|+.-=.|| +.|+++++++++.+.+ ++-+|+-+..-.|-
T Consensus 164 VP~~e------~~~w~~~p-----~~~G~~h~cGhd~-~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE 221 (478)
T PLN02280 164 LPIQE------AVEWEHKS-----KVAGKMHACGHDA-HVAMLLGAAKILKSREHLLKGTVVLLFQPAEE 221 (478)
T ss_pred CcccC------CCCCCCCC-----CCCCeEEeCCCcH-HHHHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 11100 11244555 2223344433366 8899999999998775 45566665555554
No 69
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=68.78 E-value=1e+02 Score=30.59 Aligned_cols=127 Identities=12% Similarity=0.101 Sum_probs=70.6
Q ss_pred eEeeecccccccccccCCCEEEEEEecC-CCccc-ccccc-C-chHHHHHHHHcCCCCCCCCCEEEEcccCCCCccEEEE
Q psy3774 459 DFDIKLISSTTSIMSLKTDCLVVGIFKK-NKLSS-IVKDI-D-KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILL 534 (963)
Q Consensus 459 ~f~i~~~~~~~~~~~~~~d~lVv~v~e~-~~l~~-~~~~l-d-~~g~l~~~i~~~~f~gk~ge~~~l~~~~~~~~~~vll 534 (963)
++++. ..+..+.++|++|-+..+. ..... ....+ + .+..+.+.+++..-.-..|+...... .+.+.++|+-
T Consensus 2 ~i~i~----~GdI~~~~~DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~-~~L~~k~IiH 76 (137)
T cd02903 2 TLQVA----KGDIEDETTDVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKG-GNLPCKYVYH 76 (137)
T ss_pred EEEEE----eCccCCccCCEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecC-CCCCCCEEEE
Confidence 35666 5677788999999988764 22211 11111 1 23334333332111101477665543 3456677665
Q ss_pred EEcCCC-CCcCCHHHHHHHHHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHH
Q psy3774 535 VNLGDK-KKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIII 592 (963)
Q Consensus 535 vGLG~~-~~~~~~~~~r~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg 592 (963)
+ .+.. ... ....+++....+.+.+.+.+++++++..-.........+..++.+++.
T Consensus 77 ~-~~p~~~~~-~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~ 133 (137)
T cd02903 77 V-VLPNWSNG-ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDE 133 (137)
T ss_pred e-cCCCCCCc-hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHH
Confidence 4 3330 111 457788889999999999999998886543333334444455555443
No 70
>PLN02280 IAA-amino acid hydrolase
Probab=68.73 E-value=1e+02 Score=37.16 Aligned_cols=128 Identities=10% Similarity=0.046 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCCC
Q psy3774 636 GCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGK 715 (963)
Q Consensus 636 ~~~ia~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~~ 715 (963)
...+..-+.+.|+|...|.--..=...++...+..+++|+++++.. +-.++.++- |+..+|.++..-..-.
T Consensus 93 ~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~~~-------~~~~vva~~-g~~~~~~I~l~gh~Da- 163 (478)
T PLN02280 93 PDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRYPL-------AKTGIRAWI-GTGGPPFVAVRADMDA- 163 (478)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEecC-------CCCEEEEEE-CCCCCCEEEEEEecCC-
Confidence 4455677889999999985333346677888888889999998742 224666664 4433454433221110
Q ss_pred CCCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeeccC
Q psy3774 716 FKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASENM 782 (963)
Q Consensus 716 ~~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~ENm 782 (963)
=|+. -.-+.+||+ .+ .+-|+.-=.|| +.|+++++++++.+.+ ++-+|+-+....|--
T Consensus 164 ---VP~~-e~~~w~~~p----~~-~G~~h~cGhd~-~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~ 222 (478)
T PLN02280 164 ---LPIQ-EAVEWEHKS----KV-AGKMHACGHDA-HVAMLLGAAKILKSREHLLKGTVVLLFQPAEEA 222 (478)
T ss_pred ---Cccc-CCCCCCCCC----CC-CCeEEeCCCcH-HHHHHHHHHHHHHhccccCCceEEEEecccccc
Confidence 0110 011244555 22 22233322355 8899999999998775 567787777776653
No 71
>PRK05111 acetylornithine deacetylase; Provisional
Probab=68.56 E-value=46 Score=38.14 Aligned_cols=119 Identities=23% Similarity=0.106 Sum_probs=69.5
Q ss_pred HHHHHHHHhccCCCCCCCh-------HHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEc-
Q psy3774 641 KGIELTKNLGNLSANICTP-------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM- 712 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~ltP-------~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~- 712 (963)
+-+.+.|+|+..|+---.. ...++..++.++++|+++++..... .-+=..+.+.= |+..++-++.=+|.
T Consensus 6 ~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~~nvia~~-g~~~~~il~~~H~Dv 82 (383)
T PRK05111 6 SFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPG--TRGKFNLLASL-GSGEGGLLLAGHTDT 82 (383)
T ss_pred HHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCC--CCCCceEEEEe-CCCCCeEEEEeeece
Confidence 3578889999999844221 3588889999999999998764321 00112455553 43333323222221
Q ss_pred -CCCCC---CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEeec
Q psy3774 713 -NGKFK---EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASE 780 (963)
Q Consensus 713 -g~~~~---~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~~E 780 (963)
|..+. ..|. .+-|+|. -+|| +|.|+.+.+++++.+.+++.+|+-++-..|
T Consensus 83 vp~~~~~W~~~Pf~~~~~~g~i~GrG~---------------~D~K---g~~a~~l~a~~~l~~~~~~~~i~~~~~~~E 143 (383)
T PRK05111 83 VPFDEGRWTRDPFTLTEHDGKLYGLGT---------------ADMK---GFFAFILEALRDIDLTKLKKPLYILATADE 143 (383)
T ss_pred ecCCCCcCcCCCCccEEECCEEEeccc---------------cccc---HHHHHHHHHHHHHhhcCCCCCeEEEEEecc
Confidence 11110 1222 1444443 2344 478899999999988788888777665554
No 72
>PRK08262 hypothetical protein; Provisional
Probab=68.43 E-value=24 Score=42.23 Aligned_cols=119 Identities=14% Similarity=0.034 Sum_probs=74.7
Q ss_pred HHHHHHHhccCCCCCCChH---------HHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCC-CeEEEEEE
Q psy3774 642 GIELTKNLGNLSANICTPT---------YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEP-PKLIIIKY 711 (963)
Q Consensus 642 g~~~aRdL~n~P~N~ltP~---------~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~-Prli~l~Y 711 (963)
.+.+.++|++.|+-.-.+. .+++..++.++..|++++...-. + ..+++.-+|+... |.++..-+
T Consensus 46 ~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~-----~-~~vv~~~~g~~~~~~~ill~gH 119 (486)
T PRK08262 46 AAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVG-----G-HSLLYTWKGSDPSLKPIVLMAH 119 (486)
T ss_pred HHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEEC-----C-ccEEEEEECCCCCCCeEEEECc
Confidence 4778899999998654432 36777777777778888776432 2 2455554665432 54554333
Q ss_pred c---CCCC-----C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEE
Q psy3774 712 M---NGKF-----K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNII 773 (963)
Q Consensus 712 ~---g~~~-----~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~ 773 (963)
. |..+ + ..|. .|-|.|.+ + |.+|.|+.+.+++++.+.+ ++.+|+
T Consensus 120 ~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~---------------D---~Kg~~aa~L~A~~~l~~~~~~l~~~I~ 181 (486)
T PRK08262 120 QDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGAL---------------D---DKGSLVAILEAAEALLAQGFQPRRTIY 181 (486)
T ss_pred ccccCCCCCCcccCccCCCceEeeCCEEEecCcc---------------c---cchhHHHHHHHHHHHHHcCCCCCCeEE
Confidence 2 1111 0 0122 24466651 1 3578899999999998876 678999
Q ss_pred EEEEeeccCCC
Q psy3774 774 GVIVASENMLS 784 (963)
Q Consensus 774 ~vi~~~ENm~~ 784 (963)
-++-.-|-.-+
T Consensus 182 llf~~dEE~g~ 192 (486)
T PRK08262 182 LAFGHDEEVGG 192 (486)
T ss_pred EEEecccccCC
Confidence 98888888543
No 73
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=67.94 E-value=41 Score=38.70 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=33.4
Q ss_pred HHHHHHHHHhccCCCCC---CCHHHHHHHHHHhhhcCCCeEEEeCH
Q psy3774 143 SKGIELTKNLGNLSANI---CTPTYLENISKKLSFDYKMDIEIINR 185 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~---ltP~~~a~~a~~l~~~~gv~v~v~~~ 185 (963)
.+.+.+.|+|+..|+-. -.-..++++.++.+++.|+++++...
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~ 51 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEV 51 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45678889999999854 22246889999999999999988753
No 74
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=67.45 E-value=65 Score=36.86 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=69.2
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCC---CC-CCC
Q psy3774 644 ELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNG---KF-KEA 719 (963)
Q Consensus 644 ~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~---~~-~~~ 719 (963)
++.++|+..|+---.-...++...+.+++.|++++... .+.+.+.+.=.|....|+++..-+.-. .. ...
T Consensus 3 ~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~------~~~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~ 76 (363)
T TIGR01891 3 DIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGV------GGATGVVATIGGGKPGPVVALRADMDALPIQEQTDL 76 (363)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecC------CCCcEEEEEEeCCCCCCEEEEEeccCCCCcccccCC
Confidence 68899999998666668889999999999999988632 145677776444333466655444321 11 123
Q ss_pred cEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeec
Q psy3774 720 PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASE 780 (963)
Q Consensus 720 ~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~E 780 (963)
|...+--|.-| +.++ | ++.|++++++.++.+.+ ++-+|.-+.-.-|
T Consensus 77 pf~~~~~g~l~---------g~G~-----~-~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 124 (363)
T TIGR01891 77 PYKSTNPGVMH---------ACGH-----D-LHTAILLGTAKLLKKLADLLEGTVRLIFQPAE 124 (363)
T ss_pred CcccCCCCcee---------cCcC-----H-HHHHHHHHHHHHHHhchhhCCceEEEEEeecC
Confidence 33222112222 1122 3 46778888888887654 3456655555543
No 75
>PRK08554 peptidase; Reviewed
Probab=67.16 E-value=69 Score=38.02 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=68.3
Q ss_pred HHHHHHHhccCCCCCCCH------HHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEE-EccC
Q psy3774 145 GIELTKNLGNLSANICTP------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIK-YMNG 217 (963)
Q Consensus 145 ~~~~aRdL~n~P~N~ltP------~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~-y~~~ 217 (963)
.+.+.++|++.|+-.-.+ ...+++.++.+++.|+++++++.. +...+++. .|+.. |+++..- +.--
T Consensus 3 ~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~-----~~~~l~~~-~~~~~-~~l~l~gH~DtV 75 (438)
T PRK08554 3 VLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKD-----GYYAVYGE-IGEGK-PKLLFMAHFDVV 75 (438)
T ss_pred HHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecC-----CceEEEEE-eCCCC-CEEEEEeccccC
Confidence 356778899998732221 578888889999999999877643 22344443 23332 4444333 3221
Q ss_pred CC-----CCCcEE-------EcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeeec
Q psy3774 218 KF-----KEAPIV-------LVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASEN 284 (963)
Q Consensus 218 ~~-----~~~~i~-------lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~EN 284 (963)
+. ...|.. |-|+|+ .+ +++|.|+.+.+++++.+.+++.+|.-++-.-|-
T Consensus 76 p~~~~~w~~~Pf~~~~~~g~lyGrG~---------------~D---mKgg~aa~l~A~~~l~~~~~~~~i~l~~~~dEE 136 (438)
T PRK08554 76 PVNPEEWNTEPFKLTVKGDKAYGRGS---------------AD---DKGNVASVMLALKELSKEPLNGKVIFAFTGDEE 136 (438)
T ss_pred CCCccccccCCceeEEECCEEEECCc---------------cc---chHHHHHHHHHHHHHHhcCCCCCEEEEEEcccc
Confidence 11 112332 333332 11 246788889999999877767777776666665
No 76
>PLN02693 IAA-amino acid hydrolase
Probab=66.43 E-value=1.6e+02 Score=35.15 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCCCCC
Q psy3774 143 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEA 222 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~~~~ 222 (963)
.+-+.+.|+|...|.=-..=...++.+.+.++++|+++++.. +-.+++++- |+...|+++..-..-. -
T Consensus 47 ~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~-------~~~~via~~-g~~~g~~i~l~~h~Da----V 114 (437)
T PLN02693 47 DWMVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPV-------AITGIIGYI-GTGEPPFVALRADMDA----L 114 (437)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecC-------CCcEEEEEE-CCCCCCEEEEEeecCC----C
Confidence 456899999999999888889999999999999999987522 346777764 3333455443332211 0
Q ss_pred cEEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCcEEEEEEEeeec
Q psy3774 223 PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 284 (963)
Q Consensus 223 ~i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~vnv~~~~~~~EN 284 (963)
|+- -..+.+||+ .++ .-|+ .....++.|+++++++++.+.+ ++-+|+-+.--.|=
T Consensus 115 p~~-e~~~~~~~p----~~~-G~~h-acGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE 171 (437)
T PLN02693 115 PIQ-EAVEWEHKS----KIP-GKMH-ACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEE 171 (437)
T ss_pred cCC-CCCCCCCCC----CCC-CCEE-CCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEccc
Confidence 100 001233443 111 1122 1222468889999999998875 34566665555554
No 77
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=66.40 E-value=1.2e+02 Score=35.29 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=71.3
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEE-EEc--CCCC
Q psy3774 640 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII-KYM--NGKF 716 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l-~Y~--g~~~ 716 (963)
-+-+.+.++|++.|+---.-...++...+.++++|+++...++ ++.++++- |+. +|.++.. +|. |..+
T Consensus 13 ~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~-------~~~v~~~~-g~~-~~~l~l~~H~DtVp~~~ 83 (395)
T TIGR03526 13 GDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDP-------MGNVLGYI-GHG-PKLIAMDAHIDTVGIGD 83 (395)
T ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcC-------CCcEEEEe-CCC-CCEEEEEeeccccCCCC
Confidence 3668999999999997766677888888988999998543432 34566653 543 4555433 332 1111
Q ss_pred ---C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEEEEEeecc
Q psy3774 717 ---K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 781 (963)
Q Consensus 717 ---~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~vi~~~EN 781 (963)
. ..|. -|-|.|. .+|| +|.|+.+.+++++.+.+. +.+|+-+...-|-
T Consensus 84 ~~~W~~~Pf~~~~~~g~lyGrG~---------------~D~K---g~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE 143 (395)
T TIGR03526 84 MDQWQFDPYEGYEDEEIIYGRGA---------------SDQE---GGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEE 143 (395)
T ss_pred cccccCCCCceEEECCEEEecCc---------------cccc---hhHHHHHHHHHHHHHcCCCCCceEEEEEecccc
Confidence 1 1122 2455665 2243 678899999999998764 4555444333355
No 78
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=66.34 E-value=38 Score=39.53 Aligned_cols=124 Identities=14% Similarity=0.039 Sum_probs=73.9
Q ss_pred HHHHHHHHHhccCCCCC---CCHHHHHHHHHHhhhcCCCeEEEeCHHHHHH----hcCCeEeeecCCCCCCCeEEEE-EE
Q psy3774 143 SKGIELTKNLGNLSANI---CTPTYLENISKKLSFDYKMDIEIINREQMQR----LKMGSLLSVTHGSSEPPKLIII-KY 214 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~---ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~----~gm~~~laVg~gS~~~p~li~l-~y 214 (963)
.+.+.+.|+|++.|+-. ..-...+++++++++++|++++++....... .+-..+++.=+|+..+|.++.. ++
T Consensus 14 ~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~~~~i~l~gH~ 93 (427)
T PRK13013 14 DDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARDGDCVHFNSHH 93 (427)
T ss_pred HHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCCCCEEEEEecc
Confidence 35678899999998843 2235788999999999999999875321000 0112455554555444544433 33
Q ss_pred ccCCCC----CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCcEEEEEEEe
Q psy3774 215 MNGKFK----EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVA 281 (963)
Q Consensus 215 ~~~~~~----~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~vnv~~~~~~ 281 (963)
.--+.. ..|. -|-|+|. -.|++|.|+.+.+++++.+.+ ++.+|+-++..
T Consensus 94 DvVp~~~~W~~~Pf~~~~~dg~iyGrGa------------------~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~ 155 (427)
T PRK13013 94 DVVEVGHGWTRDPFGGEVKDGRIYGRGA------------------CDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTA 155 (427)
T ss_pred ccCCCCCCCcCCCCCceEECCEEEeccc------------------cccchHHHHHHHHHHHHHHhCCCCCccEEEEEEe
Confidence 221110 1121 1233332 123578899999999998875 45678877777
Q ss_pred eec
Q psy3774 282 SEN 284 (963)
Q Consensus 282 ~EN 284 (963)
.|-
T Consensus 156 dEE 158 (427)
T PRK13013 156 DEE 158 (427)
T ss_pred ccc
Confidence 765
No 79
>PRK08201 hypothetical protein; Provisional
Probab=66.17 E-value=67 Score=38.07 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=73.5
Q ss_pred HHHHHHHHHhccCCCCCC------ChHHHHHHHHHhhhhCCCe-EEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEc
Q psy3774 640 SKGIELTKNLGNLSANIC------TPTYLENISKKLSFDYKMD-IEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM 712 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~l------tP~~la~~a~~l~~~~g~~-v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~ 712 (963)
-+.+.+-++|++.|+-.- .-..+++..++.++++|++ +++.+.. |...++++=.|+...|.++..-+.
T Consensus 14 ~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~-----~~~~l~a~~~~~~~~~~lll~gH~ 88 (456)
T PRK08201 14 EAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETA-----GHPIVYADWLHAPGKPTVLIYGHY 88 (456)
T ss_pred HHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecC-----CCCEEEEEecCCCCCCEEEEEecc
Confidence 456788899999998421 1136788888888999996 6665422 334455532333333555555443
Q ss_pred CC---CC---C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhc--CCCcEEEEEE
Q psy3774 713 NG---KF---K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEM--NLELNIIGVI 776 (963)
Q Consensus 713 g~---~~---~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l--~l~vnV~~vi 776 (963)
-- .+ + ..|. -|-|+|.+ +|| +|.|+.+.+++++.+. .+|.+|+-++
T Consensus 89 DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~---------------DmK---gglaa~l~a~~~l~~~~~~~~~~i~~~~ 150 (456)
T PRK08201 89 DVQPVDPLNLWETPPFEPTIRDGKLYARGAS---------------DDK---GQVFMHLKAVEALLKVEGTLPVNVKFCI 150 (456)
T ss_pred CCcCCCchhcccCCCCceEeECCEEEEEecc---------------cCc---HHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 21 10 1 1122 35566653 333 5788888999999764 4678888888
Q ss_pred EeeccC
Q psy3774 777 VASENM 782 (963)
Q Consensus 777 ~~~ENm 782 (963)
-.-|-.
T Consensus 151 ~~dEE~ 156 (456)
T PRK08201 151 EGEEEI 156 (456)
T ss_pred Eccccc
Confidence 887764
No 80
>PLN02693 IAA-amino acid hydrolase
Probab=65.62 E-value=94 Score=36.97 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=76.9
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCCCCCCC
Q psy3774 640 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEA 719 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~~~~~~ 719 (963)
.+-+.+.|+|...|.=-..=...++...+..+++|+++++.. +-.++.++- |+...|+++..-..-. =
T Consensus 47 ~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~-------~~~~via~~-g~~~g~~i~l~~h~Da----V 114 (437)
T PLN02693 47 DWMVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPV-------AITGIIGYI-GTGEPPFVALRADMDA----L 114 (437)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecC-------CCcEEEEEE-CCCCCCEEEEEeecCC----C
Confidence 456899999999999888888889999999999999987522 346777764 4333465544332211 0
Q ss_pred cEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeecc
Q psy3774 720 PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 781 (963)
Q Consensus 720 ~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~EN 781 (963)
|+. -..+.+||+ .++ +-|+ .....++.|+.+++++++.+.+ ++-+|+-+.-..|=
T Consensus 115 p~~-e~~~~~~~p----~~~-G~~h-acGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE 171 (437)
T PLN02693 115 PIQ-EAVEWEHKS----KIP-GKMH-ACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEE 171 (437)
T ss_pred cCC-CCCCCCCCC----CCC-CCEE-CCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEccc
Confidence 110 001234443 111 1122 1111347889999999998875 46677777766665
No 81
>PRK07473 carboxypeptidase; Provisional
Probab=64.66 E-value=1.1e+02 Score=35.32 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=72.1
Q ss_pred HHHHHHHHHhccCCCCCCChH---HHHHHHHHhhhhCCCeEEEeCHHHHHhcCCC-eEeeecCCC-CCCCeEEEEE-Ec-
Q psy3774 640 SKGIELTKNLGNLSANICTPT---YLENISKKLSFDYKMDIEIINREQMQRLKMG-SLLSVTHGS-SEPPKLIIIK-YM- 712 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~---~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg-~~laVg~GS-~~~Prli~l~-Y~- 712 (963)
.+.+.+.++|++.|+..-.+. .+++...+.+++.|++++++.... |.+ .+.+.-.|+ ..+|.++..- |.
T Consensus 11 ~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lll~gH~Dt 86 (376)
T PRK07473 11 EAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQ----GFGDCVRARFPHPRQGEPGILIAGHMDT 86 (376)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCC----CCCCeEEEEeCCCCCCCCeEEEEecCCC
Confidence 345788999999999877776 444455667788899999864321 332 454543332 2345554433 32
Q ss_pred --CCCC-CCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeeccC
Q psy3774 713 --NGKF-KEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASENM 782 (963)
Q Consensus 713 --g~~~-~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~ENm 782 (963)
+.+. ...|....+ |..| +.+-.+|| +|-|+.+.+++++.+.+ ++.+|+-++-..|=.
T Consensus 87 V~~~~~~~~~p~~~~~-g~ly---------GrG~~D~K---gglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~ 148 (376)
T PRK07473 87 VHPVGTLEKLPWRREG-NKCY---------GPGILDMK---GGNYLALEAIRQLARAGITTPLPITVLFTPDEEV 148 (376)
T ss_pred CCCCCCccCCCeEEEC-CEEE---------cCchhhch---HHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCccc
Confidence 1111 112332111 2222 11223343 57899999999998876 356766666555543
No 82
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=64.54 E-value=78 Score=35.97 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=71.7
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCCCC-CCC--
Q psy3774 643 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKF-KEA-- 719 (963)
Q Consensus 643 ~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~~~-~~~-- 719 (963)
..+-++|+..|+=--.....++...+.+++.|++++..+-.. ...+...++++-+|+...|.++...+.-.-. ...
T Consensus 3 ~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~~~~ 81 (361)
T TIGR01883 3 KKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPA-EVSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGAGPE 81 (361)
T ss_pred HHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEecccc-ccCCCceEEEEEeCCCCCCcEEEEeeccccCCCCCCC
Confidence 345688998888666777888888888899999988765321 1124567888877765445555544432111 000
Q ss_pred cE----EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC-CCcEEEEEEEeec
Q psy3774 720 PI----VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN-LELNIIGVIVASE 780 (963)
Q Consensus 720 ~i----~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~-l~vnV~~vi~~~E 780 (963)
+. -+-|+|.+- -+ .+|| +|.|+.+.+++.+.+.+ ++-+|.-+.-..|
T Consensus 82 ~~~~~~~~~g~G~~~----------~g-~D~k---~g~a~~l~~~~~l~~~~~~~~~v~~~~~~~E 133 (361)
T TIGR01883 82 PVVEDGIFTSLGGTI----------LG-ADDK---AGVAAMLEAMDVLSTEETPHGTIEFIFTVKE 133 (361)
T ss_pred ceecCCeEecCCCeE----------ee-cccc---HHHHHHHHHHHHHHhcCCCCCCEEEEEEccc
Confidence 00 122333210 01 2344 67888888999887764 3445555543333
No 83
>PRK08201 hypothetical protein; Provisional
Probab=64.02 E-value=82 Score=37.33 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=72.0
Q ss_pred HHHHHHHHHhccCCCCCC------CHHHHHHHHHHhhhcCCCe-EEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEc
Q psy3774 143 SKGIELTKNLGNLSANIC------TPTYLENISKKLSFDYKMD-IEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM 215 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~l------tP~~~a~~a~~l~~~~gv~-v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~ 215 (963)
.+.+.+-++|+..|+-.- .-..++++.++.++++|++ +++.+.. +.+.+++.=.|+...|.++...+.
T Consensus 14 ~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~-----~~~~l~a~~~~~~~~~~lll~gH~ 88 (456)
T PRK08201 14 EAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETA-----GHPIVYADWLHAPGKPTVLIYGHY 88 (456)
T ss_pred HHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecC-----CCCEEEEEecCCCCCCEEEEEecc
Confidence 355788889999998421 1146889999999999996 6665422 334455532232223455544442
Q ss_pred cC-CC-----C-CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhc--CCCcEEEEEE
Q psy3774 216 NG-KF-----K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEM--NLELNIIGVI 279 (963)
Q Consensus 216 ~~-~~-----~-~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l--~l~vnv~~~~ 279 (963)
-- +. . ..|. -|-|+|.+ .+++|.|+.+.+++++.+. .+|.+|+-++
T Consensus 89 DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~------------------DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~ 150 (456)
T PRK08201 89 DVQPVDPLNLWETPPFEPTIRDGKLYARGAS------------------DDKGQVFMHLKAVEALLKVEGTLPVNVKFCI 150 (456)
T ss_pred CCcCCCchhcccCCCCceEeECCEEEEEecc------------------cCcHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 21 10 0 1122 34555533 1356888899999888764 4577888877
Q ss_pred EeeecC
Q psy3774 280 VASENM 285 (963)
Q Consensus 280 ~~~EN~ 285 (963)
..-|-.
T Consensus 151 ~~dEE~ 156 (456)
T PRK08201 151 EGEEEI 156 (456)
T ss_pred Eccccc
Confidence 777764
No 84
>PRK07907 hypothetical protein; Provisional
Probab=63.90 E-value=1.2e+02 Score=35.76 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhccCCCCCCC------HHHHHHHHHHhhhcCCC-eEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEE
Q psy3774 142 ISKGIELTKNLGNLSANICT------PTYLENISKKLSFDYKM-DIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKY 214 (963)
Q Consensus 142 ia~~~~~aRdL~n~P~N~lt------P~~~a~~a~~l~~~~gv-~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y 214 (963)
..+.+.+.++|+..|+-.-. -...+++.++.++++|+ ++++++ ..+.+.+++.-.|+...|.++..-+
T Consensus 17 ~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-----~~~~~nl~a~~~~~~~~~~lll~gH 91 (449)
T PRK07907 17 LPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVS-----ADGAPAVIGTRPAPPGAPTVLLYAH 91 (449)
T ss_pred HHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEe-----cCCCCEEEEEecCCCCCCEEEEEcc
Confidence 34668899999999984422 14688888999999997 899886 2245667666455443455554444
Q ss_pred cc-CCC-----C-CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEE
Q psy3774 215 MN-GKF-----K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIV 280 (963)
Q Consensus 215 ~~-~~~-----~-~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~ 280 (963)
.- -+. . ..|. -|-|+|. .+ +++|.|+.+.+++++ ..+++++|..++-
T Consensus 92 ~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~---------------~D---~Kg~~aa~l~a~~~l-~~~~~~~i~~~~~ 152 (449)
T PRK07907 92 HDVQPPGDPDAWDSPPFELTERDGRLYGRGA---------------AD---DKGGIAMHLAALRAL-GGDLPVGVTVFVE 152 (449)
T ss_pred cCCCCCCCccccCCCCceeEEECCEEEECCc---------------cC---CcHHHHHHHHHHHHh-ccCCCCcEEEEEE
Confidence 22 111 0 1232 2334442 11 246778888888887 5567788887766
Q ss_pred eeec
Q psy3774 281 ASEN 284 (963)
Q Consensus 281 ~~EN 284 (963)
.-|-
T Consensus 153 ~dEE 156 (449)
T PRK07907 153 GEEE 156 (449)
T ss_pred cCcc
Confidence 6664
No 85
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=63.14 E-value=77 Score=36.86 Aligned_cols=107 Identities=15% Similarity=0.214 Sum_probs=64.4
Q ss_pred HHHHHHHHhccCCCCC------C--C--HHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCC-CCeEEEE
Q psy3774 144 KGIELTKNLGNLSANI------C--T--PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE-PPKLIII 212 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~------l--t--P~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~-~p~li~l 212 (963)
+.+.+-++|++.|++. . + -...+++.++.++++|+++++. +++.+.+.=.|+.. .|+++..
T Consensus 11 ~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~--------~~~n~~a~~~g~~~~~~~l~l~ 82 (412)
T PRK12893 11 RLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD--------AIGNLFGRRAGTDPDAPPVLIG 82 (412)
T ss_pred HHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc--------CCCcEEEEeCCCCCCCCEEEEE
Confidence 3455666777777421 1 1 2556788888889999999873 23455666556542 3555544
Q ss_pred EEccCCCCCCcEEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEEEEEeeec
Q psy3774 213 KYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 284 (963)
Q Consensus 213 ~y~~~~~~~~~i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~~~~~~EN 284 (963)
.+.-.- | + || ...| .+|.|+.+.+++++.+.+. +-+|+-+.-..|-
T Consensus 83 ~H~DtV----p---~--------~g--------~~dg---k~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE 130 (412)
T PRK12893 83 SHLDTQ----P---T--------GG--------RFDG---ALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEE 130 (412)
T ss_pred ecccCC----C---C--------CC--------cccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccc
Confidence 443210 1 1 12 1122 4789999999999998764 4566666666665
No 86
>PRK08596 acetylornithine deacetylase; Validated
Probab=63.06 E-value=98 Score=36.29 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCCCCC---CHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCC--CCCeEEEEEEccC
Q psy3774 143 SKGIELTKNLGNLSANIC---TPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSS--EPPKLIIIKYMNG 217 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~l---tP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~--~~p~li~l~y~~~ 217 (963)
.+.+.+-|+|++.|+-.- .-...+++.++.++.+|+++++.+..+ +.+.+++.=+|+. .+|+++...+.-.
T Consensus 13 ~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~----~~~nvia~~~g~~~~~~~~lll~~H~Dt 88 (421)
T PRK08596 13 DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYP----NDPNVVGVKKGTESDAYKSLIINGHMDV 88 (421)
T ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccC----CCceEEEEecCCCCCCCcEEEEeccccc
Confidence 467789999999988543 224568888899999999998765321 3466777756653 3454554433221
Q ss_pred -CCC------CCcE-------EEcccceEEecCCCCCCCCCCccccccc-hhhHHHHHHHHHHHHhcC--CCcEEEEEEE
Q psy3774 218 -KFK------EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYD-MCGAASILGTLYAISEMN--LELNIIGVIV 280 (963)
Q Consensus 218 -~~~------~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~D-m~GaAaV~g~~~a~a~l~--l~vnv~~~~~ 280 (963)
+.. ..|. -|-|+|. .| ++|.|+++.+++++.+.+ ++.+|+-++-
T Consensus 89 Vp~~~~~~W~~~Pf~~~~~~g~lyGrG~-------------------~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~ 149 (421)
T PRK08596 89 AEVSADEAWETNPFEPTIKDGWLYGRGA-------------------ADMKGGLAGALFAIQLLHEAGIELPGDLIFQSV 149 (421)
T ss_pred cCCCCccccccCCCCcEEECCEEEeccc-------------------cccchHHHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 110 0121 2444552 23 578899999999998876 5678887777
Q ss_pred eeec
Q psy3774 281 ASEN 284 (963)
Q Consensus 281 ~~EN 284 (963)
.-|.
T Consensus 150 ~dEE 153 (421)
T PRK08596 150 IGEE 153 (421)
T ss_pred eccc
Confidence 7776
No 87
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=62.40 E-value=92 Score=35.60 Aligned_cols=62 Identities=5% Similarity=-0.003 Sum_probs=43.9
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEE
Q psy3774 147 ELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKY 214 (963)
Q Consensus 147 ~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y 214 (963)
++.++|+..|+-.-.-...+++..+.++++|++++... .+.+.+++.=.|....|+++..-+
T Consensus 3 ~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~------~~~~~vva~~~~~~~~~~i~l~gH 64 (363)
T TIGR01891 3 DIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGV------GGATGVVATIGGGKPGPVVALRAD 64 (363)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecC------CCCcEEEEEEeCCCCCCEEEEEec
Confidence 68899999998666678999999999999999988632 134667766333333366554443
No 88
>PRK07338 hypothetical protein; Provisional
Probab=62.12 E-value=72 Score=36.96 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCCCCCCCH---HHHHHHHHHhhhcCCCeEEEeCHHH---HH--------HhcCCeEeeecCCCCCCCeE
Q psy3774 144 KGIELTKNLGNLSANICTP---TYLENISKKLSFDYKMDIEIINREQ---MQ--------RLKMGSLLSVTHGSSEPPKL 209 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP---~~~a~~a~~l~~~~gv~v~v~~~~~---l~--------~~gm~~~laVg~gS~~~p~l 209 (963)
+-+.+-++|++.|+-.-++ ...+++.++.+++.|++++++.... +. ..+ +.+++.-.|+..++-+
T Consensus 18 ~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~nl~a~~~~~~~~~ll 96 (402)
T PRK07338 18 PMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHG-PALHVSVRPEAPRQVL 96 (402)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcC-CeEEEEECCCCCccEE
Confidence 4456777888888655455 3678888899999999999876332 10 111 3455555554333333
Q ss_pred EEEEEccCCCCCCcE---------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEEE
Q psy3774 210 IIIKYMNGKFKEAPI---------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGV 278 (963)
Q Consensus 210 i~l~y~~~~~~~~~i---------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~~ 278 (963)
+.=+|.--+....|. -|-|+|. .+| ++|.|+.+.+++++.+.+. +.+|.-+
T Consensus 97 l~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~---------------~Dm---Kgg~aa~l~a~~~l~~~~~~~~~~i~~~ 158 (402)
T PRK07338 97 LTGHMDTVFPADHPFQTLSWLDDGTLNGPGV---------------ADM---KGGIVVMLAALLAFERSPLADKLGYDVL 158 (402)
T ss_pred EEeecCccCCCCCcccCCeEeeCCEEECCcH---------------Hhh---hHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 333332211111111 1333332 223 3578999999999987653 4566665
Q ss_pred EEeeec
Q psy3774 279 IVASEN 284 (963)
Q Consensus 279 ~~~~EN 284 (963)
+...|=
T Consensus 159 ~~~dEE 164 (402)
T PRK07338 159 INPDEE 164 (402)
T ss_pred EECCcc
Confidence 555554
No 89
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=60.66 E-value=99 Score=35.93 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=65.6
Q ss_pred HHHHHHHhccCCC-------CCCChHH--HHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEc
Q psy3774 642 GIELTKNLGNLSA-------NICTPTY--LENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM 712 (963)
Q Consensus 642 g~~~aRdL~n~P~-------N~ltP~~--la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~ 712 (963)
-++.-++|++.++ +-.++.+ .++...+.++++|++|++. +.+-++++-+|+...|+++...+.
T Consensus 12 ~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~--------~~~nl~a~~~g~~~~~~l~l~gH~ 83 (412)
T PRK12892 12 VLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID--------GIGNVFGRLPGPGPGPALLVGSHL 83 (412)
T ss_pred HHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc--------CCCcEEEEecCCCCCCeEEEEccc
Confidence 4566677777765 3445544 4477778888899999873 345666776665433566655543
Q ss_pred CCCCCCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEEEEEeecc
Q psy3774 713 NGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 781 (963)
Q Consensus 713 g~~~~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~vi~~~EN 781 (963)
-.-. + ||. ..+.+|.|+.+.+++++.+.+. +.+|+-+.-.-|=
T Consensus 84 DtVp-------~--------~g~-----------~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE 128 (412)
T PRK12892 84 DSQN-------L--------GGR-----------YDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEE 128 (412)
T ss_pred cCCC-------C--------CCc-----------ccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcc
Confidence 2110 1 221 1234689999999999998764 5566655555544
No 90
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=59.83 E-value=94 Score=37.58 Aligned_cols=62 Identities=8% Similarity=0.078 Sum_probs=45.1
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeec---CCCCCCCeEEEEEE
Q psy3774 145 GIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVT---HGSSEPPKLIIIKY 214 (963)
Q Consensus 145 ~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg---~gS~~~p~li~l~y 214 (963)
-..+-++|++.|+-.-+...++++..+.++++|+++++.. .+-+++.= .|....|.++...+
T Consensus 12 ~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~d~--------~gnvi~~~~~~~g~~~~~~v~l~gH 76 (485)
T PRK15026 12 LWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQ--------VGNILIRKPATAGMENRKPVVLQAH 76 (485)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe--------cCeEEEEEcCCCCCCCCCEEEEEee
Confidence 4567789999998888999999999999999999998752 34555542 23344566665444
No 91
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=59.36 E-value=1.1e+02 Score=36.53 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=65.5
Q ss_pred HHHHHHHHhccCCCCCCC--H----------HHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEE
Q psy3774 144 KGIELTKNLGNLSANICT--P----------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLII 211 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~lt--P----------~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~ 211 (963)
+.+.+.++|+..|+=.-. | ...+++..+.++.+|++++.++. .....-. |+ .+|.++.
T Consensus 3 ~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-------~~~~~~~--~~-~~~~l~l 72 (447)
T TIGR01887 3 EILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVDN-------YAGYAEY--GQ-GEEYLGI 72 (447)
T ss_pred HHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEecC-------ceEEEEe--CC-CCCeEEE
Confidence 346778889988862210 2 46888888999999999986542 1122222 22 2355554
Q ss_pred EEEcc-CCC---C-CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEE
Q psy3774 212 IKYMN-GKF---K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIG 277 (963)
Q Consensus 212 l~y~~-~~~---~-~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~ 277 (963)
..+.- -+. . ..|. -|.|+|.+ .|++|.|+++.++.++.+.+. +.+|..
T Consensus 73 ~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~------------------D~KG~laa~l~a~~~l~~~~~~~~~~i~~ 134 (447)
T TIGR01887 73 LGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTL------------------DDKGPTIAALYAMKILKELGLKLKKKIRF 134 (447)
T ss_pred EeecCCCCCCCCCcCCCCceEEECCEEEECCcc------------------cCcHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 44322 111 1 1232 24455532 135678889999999887764 456666
Q ss_pred EEEeeec
Q psy3774 278 VIVASEN 284 (963)
Q Consensus 278 ~~~~~EN 284 (963)
++-.-|-
T Consensus 135 ~~~~dEE 141 (447)
T TIGR01887 135 IFGTDEE 141 (447)
T ss_pred EEECCcc
Confidence 5555554
No 92
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=59.02 E-value=1.1e+02 Score=35.56 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=62.5
Q ss_pred HHHHHHHhccCCC-------CCCCHH--HHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEc
Q psy3774 145 GIELTKNLGNLSA-------NICTPT--YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM 215 (963)
Q Consensus 145 ~~~~aRdL~n~P~-------N~ltP~--~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~ 215 (963)
.++.-++|++.++ +..++. ..+++..+.++++|+++++. +.+-++++-+|+...|+|+...+.
T Consensus 12 ~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~--------~~~nl~a~~~g~~~~~~l~l~gH~ 83 (412)
T PRK12892 12 VLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID--------GIGNVFGRLPGPGPGPALLVGSHL 83 (412)
T ss_pred HHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc--------CCCcEEEEecCCCCCCeEEEEccc
Confidence 3455566666665 344554 45588888889999999873 344566666664433555555443
Q ss_pred cCCCCCCcEEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEEEEEeee
Q psy3774 216 NGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASE 283 (963)
Q Consensus 216 ~~~~~~~~i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~~~~~~E 283 (963)
-.= | + ||. ..+.+|.|+.+.+++++.+.+. +-+|+-+.-.-|
T Consensus 84 DtV----p---~--------~g~-----------~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dE 127 (412)
T PRK12892 84 DSQ----N---L--------GGR-----------YDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDE 127 (412)
T ss_pred cCC----C---C--------CCc-----------ccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCc
Confidence 210 1 1 221 1334689999999999988764 445554444434
No 93
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=58.07 E-value=1.2e+02 Score=36.32 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=65.8
Q ss_pred HHHHHHHHhccCCCCCCC--h----------HHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEE
Q psy3774 641 KGIELTKNLGNLSANICT--P----------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLII 708 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~lt--P----------~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~ 708 (963)
+.+.+.++|+..|+=--. | ...++...+.+++.|++++.++. .....-. |+ .+|.++.
T Consensus 3 ~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-------~~~~~~~--~~-~~~~l~l 72 (447)
T TIGR01887 3 EILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVDN-------YAGYAEY--GQ-GEEYLGI 72 (447)
T ss_pred HHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEecC-------ceEEEEe--CC-CCCeEEE
Confidence 346778899998873211 2 46777888889999999986652 1122222 22 2455555
Q ss_pred EEEcC---CC-CC-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEE
Q psy3774 709 IKYMN---GK-FK-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIG 774 (963)
Q Consensus 709 l~Y~g---~~-~~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~ 774 (963)
..+.- .. .. ..|. -|.|+|.+ | | .+|.|+++.+|.++.+.+. +.+|.-
T Consensus 73 ~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~-D--------------~---KG~laa~l~a~~~l~~~~~~~~~~i~~ 134 (447)
T TIGR01887 73 LGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTL-D--------------D---KGPTIAALYAMKILKELGLKLKKKIRF 134 (447)
T ss_pred EeecCCCCCCCCCcCCCCceEEECCEEEECCcc-c--------------C---cHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 44432 11 11 1233 25555542 2 3 3468888889998887764 567766
Q ss_pred EEEeecc
Q psy3774 775 VIVASEN 781 (963)
Q Consensus 775 vi~~~EN 781 (963)
++-.-|-
T Consensus 135 ~~~~dEE 141 (447)
T TIGR01887 135 IFGTDEE 141 (447)
T ss_pred EEECCcc
Confidence 6655544
No 94
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=57.27 E-value=1.1e+02 Score=37.10 Aligned_cols=62 Identities=8% Similarity=0.078 Sum_probs=45.9
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeec---CCCCCCCeEEEEEE
Q psy3774 642 GIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVT---HGSSEPPKLIIIKY 711 (963)
Q Consensus 642 g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg---~GS~~~Prli~l~Y 711 (963)
-..+-++|++.|+---....+++...+.+++.|+++++.+ .|-+++.- .|...+|.++...+
T Consensus 12 ~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~d~--------~gnvi~~~~~~~g~~~~~~v~l~gH 76 (485)
T PRK15026 12 LWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQ--------VGNILIRKPATAGMENRKPVVLQAH 76 (485)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe--------cCeEEEEEcCCCCCCCCCEEEEEee
Confidence 4577889999998888899999999999999999998752 34555552 23344566665554
No 95
>PRK06446 hypothetical protein; Provisional
Probab=56.02 E-value=1.1e+02 Score=36.17 Aligned_cols=118 Identities=11% Similarity=0.040 Sum_probs=72.0
Q ss_pred HHHHHHHHhccCCCCCCCh---HHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCC---
Q psy3774 641 KGIELTKNLGNLSANICTP---TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNG--- 714 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~ltP---~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~--- 714 (963)
+.+.+.++|+..|+-.-.+ ...++...+.++++|+++++++.. |...+.+.-.+. ..|+++..-+.--
T Consensus 3 ~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~-----~~~~lia~~~~~-~~~~vll~gH~DvVp~ 76 (436)
T PRK06446 3 EELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTK-----GHPVVYGEINVG-AKKTLLIYNHYDVQPV 76 (436)
T ss_pred hHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecC-----CCCEEEEEecCC-CCCEEEEEecccCCCC
Confidence 3577899999999965443 477788888889999999987542 333344432222 2355555444321
Q ss_pred CC---C-CCc----E---EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHh-cCCCcEEEEEEEeeccC
Q psy3774 715 KF---K-EAP----I---VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISE-MNLELNIIGVIVASENM 782 (963)
Q Consensus 715 ~~---~-~~~----i---~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~-l~l~vnV~~vi~~~ENm 782 (963)
.. + ..| + -|-|+|. .+| ++|.|+.+.+++.+.+ .+++.+|+-++-.-|-.
T Consensus 77 ~~~~~W~~~Pf~~~~~dg~lyGRGa---------------~Dm---Kgglaa~l~A~~~l~~~~~~~~~i~~~~~~dEE~ 138 (436)
T PRK06446 77 DPLSEWKRDPFSATIENGRIYARGA---------------SDN---KGTLMARLFAIKHLIDKHKLNVNVKFLYEGEEEI 138 (436)
T ss_pred CccccccCCCCceEEECCEEEEEec---------------cCC---cHHHHHHHHHHHHHHHcCCCCCCEEEEEEccccc
Confidence 11 0 111 2 3556665 223 3567888888876643 45778888777777664
No 96
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=56.00 E-value=1.6e+02 Score=33.51 Aligned_cols=121 Identities=13% Similarity=0.081 Sum_probs=69.5
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEcc-CCCCCCc--
Q psy3774 147 ELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN-GKFKEAP-- 223 (963)
Q Consensus 147 ~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~-~~~~~~~-- 223 (963)
.+-++|+..|+=.-.-...+++..+.++.+|+++++.+-..- ..+.+.++++-+|+...|.++...+-- -+.....
T Consensus 4 ~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~~~~~ 82 (361)
T TIGR01883 4 KYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAE-VSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGAGPEP 82 (361)
T ss_pred HHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccc-cCCCceEEEEEeCCCCCCcEEEEeeccccCCCCCCCc
Confidence 456888888886667788889999999999999887653211 123566777766664435554444422 1111110
Q ss_pred ----EEEcccceEEecCCCCCCCCCCccccccc-hhhHHHHHHHHHHHHhcCC-CcEEEEEEEeee
Q psy3774 224 ----IVLVGKGVTFDTGGISIKPSYSMDEMKYD-MCGAASILGTLYAISEMNL-ELNIIGVIVASE 283 (963)
Q Consensus 224 ----i~lVGKGiTFDtGG~~lK~~~~M~~Mk~D-m~GaAaV~g~~~a~a~l~l-~vnv~~~~~~~E 283 (963)
-.+-|+|.+ .+-.| ++|.|+.+.+++.+.+.+. +-+|.-++-..|
T Consensus 83 ~~~~~~~~g~G~~---------------~~g~D~k~g~a~~l~~~~~l~~~~~~~~~v~~~~~~~E 133 (361)
T TIGR01883 83 VVEDGIFTSLGGT---------------ILGADDKAGVAAMLEAMDVLSTEETPHGTIEFIFTVKE 133 (361)
T ss_pred eecCCeEecCCCe---------------EeeccccHHHHHHHHHHHHHHhcCCCCCCEEEEEEccc
Confidence 012233321 01123 3678888888888877643 345555444333
No 97
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=55.78 E-value=12 Score=32.98 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=22.7
Q ss_pred EeeccCCCCCCCCCCCEEEccCCeEEe
Q psy3774 777 VASENMLSGNSTKPGDIVVSMSGKTIE 803 (963)
Q Consensus 777 ~~~ENm~~g~a~kPgDVits~~GkTVE 803 (963)
-..+|.|....++|||+|.+.||++|.
T Consensus 14 ~V~~~s~A~~gL~~GD~I~~Ing~~v~ 40 (79)
T cd00986 14 SVVEGMPAAGKLKAGDHIIAVDGKPFK 40 (79)
T ss_pred EECCCCchhhCCCCCCEEEEECCEECC
Confidence 345788887789999999999999875
No 98
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=55.70 E-value=4.4 Score=36.27 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=22.9
Q ss_pred EEEeeccCCCCCC-CCCCCEEEccCCeEE
Q psy3774 775 VIVASENMLSGNS-TKPGDIVVSMSGKTI 802 (963)
Q Consensus 775 vi~~~ENm~~g~a-~kPgDVits~~GkTV 802 (963)
|.-..+|.|.-.| ++|||+|.+.||+.|
T Consensus 18 V~~V~~~spA~~aGl~~GD~I~~ing~~v 46 (82)
T PF13180_consen 18 VVSVIPGSPAAKAGLQPGDIILAINGKPV 46 (82)
T ss_dssp EEEESTTSHHHHTTS-TTEEEEEETTEES
T ss_pred EEEeCCCCcHHHCCCCCCcEEEEECCEEc
Confidence 3446788888777 999999999999998
No 99
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=55.53 E-value=1.1e+02 Score=35.39 Aligned_cols=120 Identities=19% Similarity=0.195 Sum_probs=67.6
Q ss_pred HHHHHHHHHhccCCCCC---CChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCC-----CeEeeecCCCCCCCeEEEEEE
Q psy3774 640 SKGIELTKNLGNLSANI---CTPTYLENISKKLSFDYKMDIEIINREQMQRLKM-----GSLLSVTHGSSEPPKLIIIKY 711 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~---ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gm-----g~~laVg~GS~~~Prli~l~Y 711 (963)
.+.+.+.|+|++.|+-. -.-..+++...+.+++.|+++++.+..... .+. ..+++- .|+.. |.++...+
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~-~~ill~~H 82 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEY-VKKHDGPRPNLIAR-RGSGN-PHLHFNGH 82 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccc-cccccCCcceEEEE-eCCCC-ceEEEEee
Confidence 45678899999999853 222468888888889999999887532110 000 012221 23333 44333222
Q ss_pred cC---CCCC---CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEEe
Q psy3774 712 MN---GKFK---EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVA 778 (963)
Q Consensus 712 ~g---~~~~---~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~~ 778 (963)
.- ..+. ..|. -+-|+|. --|++|.|+.+.+++.+.+.+ +.+|.-+.-.
T Consensus 83 lDtvp~~~~~~~~~Pf~~~~~~~~~~grG~------------------~D~k~~~~~~l~a~~~l~~~~-~~~v~~~~~~ 143 (394)
T PRK08651 83 YDVVPPGEGWSVNVPFEPKVKDGKVYGRGA------------------SDMKGGIAALLAAFERLDPAG-DGNIELAIVP 143 (394)
T ss_pred eeeecCCCCccccCCCCcEEECCEEEecCc------------------cccchHHHHHHHHHHHHHhcC-CCCEEEEEec
Confidence 11 1100 0111 1233332 023577899999999998776 7777777666
Q ss_pred ecc
Q psy3774 779 SEN 781 (963)
Q Consensus 779 ~EN 781 (963)
.|-
T Consensus 144 ~EE 146 (394)
T PRK08651 144 DEE 146 (394)
T ss_pred Ccc
Confidence 664
No 100
>PRK07079 hypothetical protein; Provisional
Probab=55.27 E-value=1.4e+02 Score=35.70 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=68.4
Q ss_pred HHHHHHHHhccCCCCCCCH---HHHHHHH----HHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEcc
Q psy3774 144 KGIELTKNLGNLSANICTP---TYLENIS----KKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN 216 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP---~~~a~~a----~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~ 216 (963)
+.+.+.++|+..|+-.-.+ ..+++.. .+.++++|+++++++... ..+.+.++++=.|+...|+++..-+.-
T Consensus 18 ~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~--~~~~~~vva~~~~~~~~~~lll~gH~D 95 (469)
T PRK07079 18 AFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPV--AGGGPFLIAERIEDDALPTVLIYGHGD 95 (469)
T ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCC--CCCCCEEEEEeCCCCCCCEEEEEcccC
Confidence 5688999999999854322 2344443 457888999999887421 123455666533333335544433321
Q ss_pred -CCC----CC---CcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHh---cCCCcEEEEE
Q psy3774 217 -GKF----KE---API-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISE---MNLELNIIGV 278 (963)
Q Consensus 217 -~~~----~~---~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~---l~l~vnv~~~ 278 (963)
-+. .+ .|. -|.|+|. .+ +++|.|+.+.+++++.+ .+++.||+-+
T Consensus 96 vVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa---------------~D---mKgg~aa~l~A~~~l~~~~~~~~~~~i~~~ 157 (469)
T PRK07079 96 VVRGYDEQWREGLSPWTLTEEGDRWYGRGT---------------AD---NKGQHTINLAALEQVLAARGGRLGFNVKLL 157 (469)
T ss_pred CCCCChHHhcccCCCCcccccCCEEEEEec---------------cC---CcHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 110 00 111 3455552 11 24677888888888753 4566787766
Q ss_pred EEeeec
Q psy3774 279 IVASEN 284 (963)
Q Consensus 279 ~~~~EN 284 (963)
+-.-|=
T Consensus 158 ~~~dEE 163 (469)
T PRK07079 158 IEMGEE 163 (469)
T ss_pred EECccc
Confidence 666554
No 101
>PRK05469 peptidase T; Provisional
Probab=55.15 E-value=1.9e+02 Score=33.68 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=70.8
Q ss_pred HHHHHHhccCCCCCCC----------hHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCC--CCCeEEEEE
Q psy3774 643 IELTKNLGNLSANICT----------PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSS--EPPKLIIIK 710 (963)
Q Consensus 643 ~~~aRdL~n~P~N~lt----------P~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~--~~Prli~l~ 710 (963)
++.-++|++.|+-.-. -..+++..++.+++.|+++..+++ .+.++++=+|+. ..|+++...
T Consensus 5 ~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~-------~~~v~~~~~g~~~~~~~~i~l~~ 77 (408)
T PRK05469 5 LERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDE-------NGYVMATLPANVDKDVPTIGFIA 77 (408)
T ss_pred HHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECC-------CeEEEEEecCCCCCCCCeEEEEE
Confidence 4555667777766533 466777788888889997444552 456888877763 236666555
Q ss_pred EcCCC---CC--CCcEEEeccCeeeccCCCCCCC------------------------CCChhhhcccc-hhhhHHHHHH
Q psy3774 711 YMNGK---FK--EAPIVLVGKGVTFDTGGISIKP------------------------SYSMDEMKYDM-CGAASILGTL 760 (963)
Q Consensus 711 Y~g~~---~~--~~~i~LVGKGiTFDsGGislKp------------------------~~~M~~MK~DM-~GAAaVlga~ 760 (963)
+.-.- .. ..|... =-||-|.+-..| .+.| -+=.|| +|.|+.+.++
T Consensus 78 H~D~vp~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~-~lg~D~Kgglaa~l~a~ 152 (408)
T PRK05469 78 HMDTAPDFSGKNVKPQII----ENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTT-LLGADDKAGIAEIMTAL 152 (408)
T ss_pred eccCCCCCCCCCCCCEEe----ccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCE-eecccchHHHHHHHHHH
Confidence 43221 10 011100 013332221111 0101 010344 6688888899
Q ss_pred HHHHhcC--CCcEEEEEEEeeccC
Q psy3774 761 YAISEMN--LELNIIGVIVASENM 782 (963)
Q Consensus 761 ~aia~l~--l~vnV~~vi~~~ENm 782 (963)
+++.+.+ ++.+|+-+.-..|-.
T Consensus 153 ~~l~~~~~~~~g~v~~~f~~dEE~ 176 (408)
T PRK05469 153 EYLIAHPEIKHGDIRVAFTPDEEI 176 (408)
T ss_pred HHHHhCCCCCCCCEEEEEeccccc
Confidence 9998764 457888888777753
No 102
>PRK06156 hypothetical protein; Provisional
Probab=54.15 E-value=1.8e+02 Score=35.40 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=63.8
Q ss_pred HHHHHHHHhccCCCCCC-------CHH--HHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEe-eecCCCCCCCeEEEEE
Q psy3774 144 KGIELTKNLGNLSANIC-------TPT--YLENISKKLSFDYKMDIEIINREQMQRLKMGSLL-SVTHGSSEPPKLIIIK 213 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~l-------tP~--~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~l-aVg~gS~~~p~li~l~ 213 (963)
+.+.+-|+|+..|+-.- .|. .++++..+.++++|++++... +.++ +.-.|+ .+|.++..-
T Consensus 47 ~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~~---------~~v~~~~~~g~-~~~~l~l~g 116 (520)
T PRK06156 47 AAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNVD---------NRVLEIGLGGS-GSDKVGILT 116 (520)
T ss_pred HHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEecC---------CeEEEEEecCC-CCCeEEEEE
Confidence 55677889999987321 122 457888899999999986531 2222 222333 345665554
Q ss_pred Ecc-CCC----CC------CcEEEccc-ceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEEEE
Q psy3774 214 YMN-GKF----KE------APIVLVGK-GVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVI 279 (963)
Q Consensus 214 y~~-~~~----~~------~~i~lVGK-GiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~~~ 279 (963)
+-- -+. .+ .|+..+=+ |..|--|- -.+++|.|+.+.++.++.+.+. +.+|..++
T Consensus 117 H~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~------------~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~ 184 (520)
T PRK06156 117 HADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGT------------EDDKGAIVTALYAMKAIKDSGLPLARRIELLV 184 (520)
T ss_pred ecCccCCCCccCccCCccCCCCceEEECCEEEEcCc------------ccchHHHHHHHHHHHHHHHcCCCCCceEEEEE
Confidence 422 111 00 33332211 12221111 1124677777788888887664 45677666
Q ss_pred Eeee
Q psy3774 280 VASE 283 (963)
Q Consensus 280 ~~~E 283 (963)
..-|
T Consensus 185 ~~dE 188 (520)
T PRK06156 185 YTTE 188 (520)
T ss_pred eccc
Confidence 6654
No 103
>PRK05469 peptidase T; Provisional
Probab=53.60 E-value=1.6e+02 Score=34.34 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=69.1
Q ss_pred HHHHHHhccCCCCCCC----------HHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCC--CCCeEEEEE
Q psy3774 146 IELTKNLGNLSANICT----------PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSS--EPPKLIIIK 213 (963)
Q Consensus 146 ~~~aRdL~n~P~N~lt----------P~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~--~~p~li~l~ 213 (963)
++.-++|+..|+-.-. -..++++.++.+++.|+++..++. .+.++++=+|+. ..|+++...
T Consensus 5 ~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~-------~~~v~~~~~g~~~~~~~~i~l~~ 77 (408)
T PRK05469 5 LERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDE-------NGYVMATLPANVDKDVPTIGFIA 77 (408)
T ss_pred HHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECC-------CeEEEEEecCCCCCCCCeEEEEE
Confidence 3455566666655533 477888888999999997444552 455777767763 235555444
Q ss_pred -EccCCCCC----CcEEEcccceEEecCCCCCCC------------------------CCCcccc-ccchhhHHHHHHHH
Q psy3774 214 -YMNGKFKE----APIVLVGKGVTFDTGGISIKP------------------------SYSMDEM-KYDMCGAASILGTL 263 (963)
Q Consensus 214 -y~~~~~~~----~~i~lVGKGiTFDtGG~~lK~------------------------~~~M~~M-k~Dm~GaAaV~g~~ 263 (963)
|.--+... .|... =-||.|.+-..| .+.| -+ -.|++|.|+.+.++
T Consensus 78 H~D~vp~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~-~lg~D~Kgglaa~l~a~ 152 (408)
T PRK05469 78 HMDTAPDFSGKNVKPQII----ENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTT-LLGADDKAGIAEIMTAL 152 (408)
T ss_pred eccCCCCCCCCCCCCEEe----ccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCE-eecccchHHHHHHHHHH
Confidence 43221100 11100 012222221100 0111 01 23457788999999
Q ss_pred HHHHhcC--CCcEEEEEEEeeec
Q psy3774 264 YAISEMN--LELNIIGVIVASEN 284 (963)
Q Consensus 264 ~a~a~l~--l~vnv~~~~~~~EN 284 (963)
+++.+.+ ++.+|+-+.-..|-
T Consensus 153 ~~l~~~~~~~~g~v~~~f~~dEE 175 (408)
T PRK05469 153 EYLIAHPEIKHGDIRVAFTPDEE 175 (408)
T ss_pred HHHHhCCCCCCCCEEEEEecccc
Confidence 9998764 34677777777775
No 104
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=53.18 E-value=67 Score=37.62 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=51.2
Q ss_pred HHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCC-CCeEEEEEEcCCCCCCCcEEEeccCeeeccCCCCCCCC
Q psy3774 662 LENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSE-PPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPS 740 (963)
Q Consensus 662 la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~-~Prli~l~Y~g~~~~~~~i~LVGKGiTFDsGGislKp~ 740 (963)
.++..++.+++.|++|++.+ -+-+.+.=.|+.. .|.++...+.-.-. + ||
T Consensus 42 ~~~~l~~~l~~~G~~v~~~~--------~gNl~a~~~g~~~~~~~l~~~~H~DtVp-------~--------gg------ 92 (414)
T PRK12891 42 ARDLFVAWARDAGCTVRVDA--------MGNLFARRAGRDPDAAPVMTGSHADSQP-------T--------GG------ 92 (414)
T ss_pred HHHHHHHHHHHCCCEEEECC--------CCCEEEEecCCCCCCCeEEEEecccCCC-------C--------Cc------
Confidence 56667778888999999853 2345554455432 25555544432110 0 22
Q ss_pred CChhhhcccchhhhHHHHHHHHHHhcCCC--cEEEEEEEeeccC
Q psy3774 741 YSMDEMKYDMCGAASILGTLYAISEMNLE--LNIIGVIVASENM 782 (963)
Q Consensus 741 ~~M~~MK~DM~GAAaVlga~~aia~l~l~--vnV~~vi~~~ENm 782 (963)
..+| ++|.++.+.+++++.+.+.+ .+|.-+.-.-|=.
T Consensus 93 --~~D~---k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~ 131 (414)
T PRK12891 93 --RYDG---IYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEG 131 (414)
T ss_pred --cccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccc
Confidence 1123 36888999999999888763 4555555556553
No 105
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=53.13 E-value=14 Score=32.53 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=22.9
Q ss_pred EeeecCCCCCCCCCCcEEEecCceEEE
Q psy3774 280 VASENMLSGNSTKPGDIVVSMSGKTIE 306 (963)
Q Consensus 280 ~~~EN~~~~~a~~pgDVi~~~~G~tvE 306 (963)
...+|.|.....+|||+|++.||++|.
T Consensus 14 ~V~~~s~A~~gL~~GD~I~~Ing~~v~ 40 (79)
T cd00986 14 SVVEGMPAAGKLKAGDHIIAVDGKPFK 40 (79)
T ss_pred EECCCCchhhCCCCCCEEEEECCEECC
Confidence 446788887789999999999999875
No 106
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=52.91 E-value=2.1e+02 Score=29.30 Aligned_cols=141 Identities=11% Similarity=0.061 Sum_probs=76.8
Q ss_pred cccccccCCCEEEEEEecCCCccc-ccccc-C-chHHHHHHHHcCCCCCCCCCEEEEcccCCCCccEEEEEEcCCCC---
Q psy3774 468 TTSIMSLKTDCLVVGIFKKNKLSS-IVKDI-D-KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGDKK--- 541 (963)
Q Consensus 468 ~~~~~~~~~d~lVv~v~e~~~l~~-~~~~l-d-~~g~l~~~i~~~~f~gk~ge~~~l~~~~~~~~~~vllvGLG~~~--- 541 (963)
..+..+.++|++|-+..+...... ....+ + -+..+.+-++.. -.-..|+...... ...+.++|+-+ +|..-
T Consensus 6 ~GdI~~~~~daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~-~~~~~G~~v~T~~-~~l~~~~IiH~-v~P~~~~~ 82 (165)
T cd02908 6 QGDITKLEVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEECREL-RGCPTGEAVITSG-YNLPAKYVIHT-VGPVWRGG 82 (165)
T ss_pred ecccceeecCEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCCEEEeeC-CCCCCCEEEEE-cCCcccCC
Confidence 456667789999998776432221 11111 1 223333323221 1227788766654 34556666654 23201
Q ss_pred CcCCHHHHHHHHHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHHHhcCcccCCCccCCCCCCccCceEEEEEe
Q psy3774 542 KKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFAL 621 (963)
Q Consensus 542 ~~~~~~~~r~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~l~~Y~f~~yk~~~~~~~~~l~~l~l~~ 621 (963)
..-+.+.++++...+.+.+.+.+++++++.+-.........+..++.+.+.+ .+|-+ +. ..+++|.|+.
T Consensus 83 ~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai----~~fl~---~~----~~l~~V~~v~ 151 (165)
T cd02908 83 QHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTV----REFLE---EH----DAIERVIFVC 151 (165)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHH----HHHHh---cC----CCCCEEEEEe
Confidence 1234678899999999999999999988865443333344344444444433 33321 11 1367788876
Q ss_pred c
Q psy3774 622 D 622 (963)
Q Consensus 622 ~ 622 (963)
.
T Consensus 152 ~ 152 (165)
T cd02908 152 F 152 (165)
T ss_pred C
Confidence 3
No 107
>PRK07205 hypothetical protein; Provisional
Probab=52.38 E-value=1.9e+02 Score=34.23 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=67.9
Q ss_pred HHHHHHHHHhccCCCCCCCH----------HHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEE
Q psy3774 143 SKGIELTKNLGNLSANICTP----------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII 212 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP----------~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l 212 (963)
.+.+.+-|+|+..|+-.-.+ ..++++..+.++++|+++++.+. +...+ +. .|+..++-++.-
T Consensus 11 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~------~~~~~-~~-~g~~~~~lll~g 82 (444)
T PRK07205 11 DACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPK------GYYGY-AE-IGQGEELLAILC 82 (444)
T ss_pred HHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCC------CeEEE-EE-ecCCCcEEEEEE
Confidence 35678888999999733222 45666667888899999887531 22222 21 255444444444
Q ss_pred EEccCCC-----C-CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEE
Q psy3774 213 KYMNGKF-----K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIG 277 (963)
Q Consensus 213 ~y~~~~~-----~-~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~ 277 (963)
+|.--+. . .+|. -|-|+|. . -+++|.|+++.+++++.+.+. +.+|+-
T Consensus 83 H~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa---------------~---DmKgglaa~l~Al~~l~~~~~~~~~~i~l 144 (444)
T PRK07205 83 HLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGT---------------Q---DDKGPSMAALYAVKALLDAGVQFNKRIRF 144 (444)
T ss_pred eeccCCCCCcccCCCCCCceEEECCEEEECCc---------------c---cCcHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 4433221 0 1232 3556663 1 125779999999999988764 567666
Q ss_pred EEEeeec
Q psy3774 278 VIVASEN 284 (963)
Q Consensus 278 ~~~~~EN 284 (963)
++..=|=
T Consensus 145 ~~~~dEE 151 (444)
T PRK07205 145 IFGTDEE 151 (444)
T ss_pred EEECCcc
Confidence 5555544
No 108
>PRK06156 hypothetical protein; Provisional
Probab=51.63 E-value=2.4e+02 Score=34.26 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=64.6
Q ss_pred HHHHHHHHhccCCCCCC-------ChH--HHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEee-ecCCCCCCCeEEEEE
Q psy3774 641 KGIELTKNLGNLSANIC-------TPT--YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLS-VTHGSSEPPKLIIIK 710 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~l-------tP~--~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~la-Vg~GS~~~Prli~l~ 710 (963)
+.+.+-|+|++.|+-.- .|. .+++...++++++|++++.. +.++. +..+...+|+++..-
T Consensus 47 ~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~----------~~~v~~~~~~g~~~~~l~l~g 116 (520)
T PRK06156 47 AAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV----------DNRVLEIGLGGSGSDKVGILT 116 (520)
T ss_pred HHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec----------CCeEEEEEecCCCCCeEEEEE
Confidence 45678889999997321 132 45677888889999998753 12332 222223456666555
Q ss_pred EcC---CCC--CC------CcEE-------EeccCeeeccCCCCCCCCCChhhhcccc-hhhhHHHHHHHHHHhcCC--C
Q psy3774 711 YMN---GKF--KE------APIV-------LVGKGVTFDTGGISIKPSYSMDEMKYDM-CGAASILGTLYAISEMNL--E 769 (963)
Q Consensus 711 Y~g---~~~--~~------~~i~-------LVGKGiTFDsGGislKp~~~M~~MK~DM-~GAAaVlga~~aia~l~l--~ 769 (963)
+.- ... ++ .|+. |-|+|. +|| +|.|+.+-++.++.+.+. +
T Consensus 117 H~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~-------------------~D~Kgg~a~~l~a~~~l~~~~~~~~ 177 (520)
T PRK06156 117 HADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGT-------------------EDDKGAIVTALYAMKAIKDSGLPLA 177 (520)
T ss_pred ecCccCCCCccCccCCccCCCCceEEECCEEEEcCc-------------------ccchHHHHHHHHHHHHHHHcCCCCC
Confidence 432 111 11 3443 334443 233 466777788888888764 4
Q ss_pred cEEEEEEEeec
Q psy3774 770 LNIIGVIVASE 780 (963)
Q Consensus 770 vnV~~vi~~~E 780 (963)
.+|.-++-.-|
T Consensus 178 ~~i~~~~~~dE 188 (520)
T PRK06156 178 RRIELLVYTTE 188 (520)
T ss_pred ceEEEEEeccc
Confidence 67777776664
No 109
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=51.45 E-value=5.7 Score=35.50 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=32.6
Q ss_pred EEEeeecCCCCCC-CCCCcEEEecCceEEEeecCCcccceeehhhhhhhhhcCCcEEEEe
Q psy3774 278 VIVASENMLSGNS-TKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDI 336 (963)
Q Consensus 278 ~~~~~EN~~~~~a-~~pgDVi~~~~G~tvEi~NTDAEGRLvLADal~ya~~~~p~~iiD~ 336 (963)
+.-..+|.|...+ ++|||+|.+.||+.| ++. .|...+..+..|..-+.+
T Consensus 18 V~~V~~~spA~~aGl~~GD~I~~ing~~v----~~~------~~~~~~l~~~~~g~~v~l 67 (82)
T PF13180_consen 18 VVSVIPGSPAAKAGLQPGDIILAINGKPV----NSS------EDLVNILSKGKPGDTVTL 67 (82)
T ss_dssp EEEESTTSHHHHTTS-TTEEEEEETTEES----SSH------HHHHHHHHCSSTTSEEEE
T ss_pred EEEeCCCCcHHHCCCCCCcEEEEECCEEc----CCH------HHHHHHHHhCCCCCEEEE
Confidence 3446788888888 999999999999998 221 344445455555544443
No 110
>PRK08262 hypothetical protein; Provisional
Probab=51.10 E-value=59 Score=38.92 Aligned_cols=120 Identities=13% Similarity=0.026 Sum_probs=73.6
Q ss_pred HHHHHHHHhccCCCCCCCHH---------HHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCC-CeEEEE-
Q psy3774 144 KGIELTKNLGNLSANICTPT---------YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEP-PKLIII- 212 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~---------~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~-p~li~l- 212 (963)
+.+.+.++|++.|+-.-.+. .++++.++.++..|+++++..-+ +.+ +++.-+|+... |.++..
T Consensus 45 ~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~-----~~~-vv~~~~g~~~~~~~ill~g 118 (486)
T PRK08262 45 AAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVG-----GHS-LLYTWKGSDPSLKPIVLMA 118 (486)
T ss_pred HHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEEC-----Ccc-EEEEEECCCCCCCeEEEEC
Confidence 44678889999888554431 37888888888788888776432 233 44443565422 444433
Q ss_pred EEccCCCC-------C-CcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcC--CCcEE
Q psy3774 213 KYMNGKFK-------E-API-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNI 275 (963)
Q Consensus 213 ~y~~~~~~-------~-~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~--l~vnv 275 (963)
+|.--+.. + .|. .|-|.|.+ .|++|.|+.+.+++.+.+.+ ++.+|
T Consensus 119 H~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~------------------D~Kg~~aa~L~A~~~l~~~~~~l~~~I 180 (486)
T PRK08262 119 HQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGAL------------------DDKGSLVAILEAAEALLAQGFQPRRTI 180 (486)
T ss_pred cccccCCCCCCcccCccCCCceEeeCCEEEecCcc------------------ccchhHHHHHHHHHHHHHcCCCCCCeE
Confidence 33221110 0 122 24455531 24788999999999998876 57888
Q ss_pred EEEEEeeecCCC
Q psy3774 276 IGVIVASENMLS 287 (963)
Q Consensus 276 ~~~~~~~EN~~~ 287 (963)
+-++-.-|-.-+
T Consensus 181 ~llf~~dEE~g~ 192 (486)
T PRK08262 181 YLAFGHDEEVGG 192 (486)
T ss_pred EEEEecccccCC
Confidence 888888887533
No 111
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=50.72 E-value=1.8e+02 Score=33.76 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=26.3
Q ss_pred ccc-hhhhHHHHHHHHHHhcCCCcEEEEEEEeec
Q psy3774 748 YDM-CGAASILGTLYAISEMNLELNIIGVIVASE 780 (963)
Q Consensus 748 ~DM-~GAAaVlga~~aia~l~l~vnV~~vi~~~E 780 (963)
.|| +|.|+++-+++++.+.+++.+|+.+.-..|
T Consensus 142 ~DnasGvA~lLe~ar~l~~~~~~~~I~fv~~~~E 175 (346)
T PRK10199 142 DDNAAGLGVMLELAERLKNVPTEYGIRFVATSGE 175 (346)
T ss_pred cccHHHHHHHHHHHHHHhhCCCCCcEEEEEECCc
Confidence 456 899999999999998887777776666665
No 112
>KOG0438|consensus
Probab=49.88 E-value=32 Score=38.74 Aligned_cols=51 Identities=35% Similarity=0.610 Sum_probs=40.6
Q ss_pred CCCCCCCeEEEEEEcCCCCCCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCCCcEEEEEEE
Q psy3774 698 HGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIV 777 (963)
Q Consensus 698 ~GS~~~Prli~l~Y~g~~~~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l~vnV~~vi~ 777 (963)
+|+...-+++.++|.|+. ..+|+||=.| |+|+ -+|=
T Consensus 97 ~~~~~~e~v~~i~yDP~R--s~~iaLv~~~----~~~~--------------------------------------~~Il 132 (312)
T KOG0438|consen 97 QGTTTEERVIEIEYDPGR--SAKIALVAGG----TGEL--------------------------------------RYIL 132 (312)
T ss_pred ccccccceEEEEEECCCc--cccEEEEecc----CCCe--------------------------------------eEEE
Confidence 455556699999999874 3689999887 6776 4677
Q ss_pred eeccCCCCCCCCCCCEEEccC
Q psy3774 778 ASENMLSGNSTKPGDIVVSMS 798 (963)
Q Consensus 778 ~~ENm~~g~a~kPgDVits~~ 798 (963)
+||||+ +||+|.|.+
T Consensus 133 a~egm~------aGD~i~ss~ 147 (312)
T KOG0438|consen 133 ATEGLK------AGDTILSSR 147 (312)
T ss_pred EecCCC------CCCcccccc
Confidence 899987 899998877
No 113
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=49.32 E-value=1.9e+02 Score=33.57 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhcCCCeEEEeCHH--------HHHH----hcCCeEeeecCCCCCCCeEEEEEEccCCCCCCcEEEccc
Q psy3774 162 PTYLENISKKLSFDYKMDIEIINRE--------QMQR----LKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGK 229 (963)
Q Consensus 162 P~~~a~~a~~l~~~~gv~v~v~~~~--------~l~~----~gm~~~laVg~gS~~~p~li~l~y~~~~~~~~~i~lVGK 229 (963)
-...+++.++.+++.|+++++..-. .-.+ .--+.+++.-.|+..++.++.-+|.--.... ..
T Consensus 54 E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill~AH~DTV~p~~------~~ 127 (346)
T PRK10199 54 EMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPQS------DA 127 (346)
T ss_pred HHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEEEEEcCcCCCCC------CC
Confidence 3456777778888889998864311 0000 0012244554565544444444443211000 01
Q ss_pred ceEEecCCCCCCCCCCccccccch-hhHHHHHHHHHHHHhcCCCcEEEEEEEeee
Q psy3774 230 GVTFDTGGISIKPSYSMDEMKYDM-CGAASILGTLYAISEMNLELNIIGVIVASE 283 (963)
Q Consensus 230 GiTFDtGG~~lK~~~~M~~Mk~Dm-~GaAaV~g~~~a~a~l~l~vnv~~~~~~~E 283 (963)
-..|..||+-. . --.|| +|.|+++-+++++.+.+++.+|+-+.-..|
T Consensus 128 ~~~~~~~g~~~---~----GA~DnasGvA~lLe~ar~l~~~~~~~~I~fv~~~~E 175 (346)
T PRK10199 128 DVDANLGGLTL---Q----GMDDNAAGLGVMLELAERLKNVPTEYGIRFVATSGE 175 (346)
T ss_pred ccccCCCCccc---C----CccccHHHHHHHHHHHHHHhhCCCCCcEEEEEECCc
Confidence 11223333111 1 22355 899999999999988776666555444444
No 114
>PRK05111 acetylornithine deacetylase; Provisional
Probab=49.17 E-value=2e+02 Score=32.87 Aligned_cols=119 Identities=24% Similarity=0.121 Sum_probs=68.4
Q ss_pred HHHHHHHHhccCCCCCCCH-------HHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEcc
Q psy3774 144 KGIELTKNLGNLSANICTP-------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN 216 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP-------~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~ 216 (963)
+-+.+-|+|+..|+-.-.. ...+++.++.++++|+++++..-.+- ..+ ..+++.= |+..++-++.-+|.-
T Consensus 6 ~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~-~nvia~~-g~~~~~il~~~H~Dv 82 (383)
T PRK05111 6 SFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGT-RGK-FNLLASL-GSGEGGLLLAGHTDT 82 (383)
T ss_pred HHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCC-CCC-ceEEEEe-CCCCCeEEEEeeece
Confidence 3467889999999843221 45899999999999999987643210 011 2344443 433333333333322
Q ss_pred CC--CC---CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEEeee
Q psy3774 217 GK--FK---EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASE 283 (963)
Q Consensus 217 ~~--~~---~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~~~E 283 (963)
-+ +. ..|. .+-|+|. .+| ++|.|+++.+++++.+.+++.+|+-++-.-|
T Consensus 83 vp~~~~~W~~~Pf~~~~~~g~i~GrG~---------------~D~---Kg~~a~~l~a~~~l~~~~~~~~i~~~~~~~E 143 (383)
T PRK05111 83 VPFDEGRWTRDPFTLTEHDGKLYGLGT---------------ADM---KGFFAFILEALRDIDLTKLKKPLYILATADE 143 (383)
T ss_pred ecCCCCcCcCCCCccEEECCEEEeccc---------------ccc---cHHHHHHHHHHHHHhhcCCCCCeEEEEEecc
Confidence 11 10 1222 1334442 223 4578899999999887777777766555554
No 115
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=48.52 E-value=1.9e+02 Score=34.60 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccCCCCCC------------ChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEE
Q psy3774 640 SKGIELTKNLGNLSANIC------------TPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLI 707 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~l------------tP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli 707 (963)
-+-+++.++|+..|+=.- .....++...+++++.|+++++++... +.+ +. |+. .|+++
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~------~~~--~~-~~~-~~~l~ 82 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFDNYA------GHV--EY-GAG-DERLG 82 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEecCCc------eeE--Ee-cCC-CCEEE
Confidence 356899999999998421 123355566688889999999876210 111 12 222 34544
Q ss_pred EEEEc---CCCC-C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEE
Q psy3774 708 IIKYM---NGKF-K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNII 773 (963)
Q Consensus 708 ~l~Y~---g~~~-~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~ 773 (963)
..-+. |..+ + ..|. -|.|+|.+ +| .+|.|+.+-+++++.+.+. +.+|+
T Consensus 83 ~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~---------------D~---Kg~~~a~l~a~~~l~~~~~~~~~~i~ 144 (466)
T TIGR01886 83 IIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGAS---------------DD---KGPSLAAYYAMKILKELGLPPSKKIR 144 (466)
T ss_pred EEeecccCCCCCCCcCCCCCeEEECCEEEecCcc---------------cc---chHHHHHHHHHHHHHHhCCCCCCCEE
Confidence 44332 1111 1 1222 25566652 22 3457888888999988764 67888
Q ss_pred EEEEeecc
Q psy3774 774 GVIVASEN 781 (963)
Q Consensus 774 ~vi~~~EN 781 (963)
-++..-|=
T Consensus 145 ~~~~~dEE 152 (466)
T TIGR01886 145 FVVGTNEE 152 (466)
T ss_pred EEEECccc
Confidence 88877654
No 116
>PRK07205 hypothetical protein; Provisional
Probab=48.10 E-value=2.2e+02 Score=33.57 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccCCCCCCCh----------HHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEE
Q psy3774 640 SKGIELTKNLGNLSANICTP----------TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII 709 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP----------~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l 709 (963)
.+.+.+-|+|+..|+-.-.+ ...++...+.++++|+++++.+. +-..+ +. .|+..|+-++.=
T Consensus 11 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~------~~~~~-~~-~g~~~~~lll~g 82 (444)
T PRK07205 11 DACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPK------GYYGY-AE-IGQGEELLAILC 82 (444)
T ss_pred HHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCC------CeEEE-EE-ecCCCcEEEEEE
Confidence 45678889999999732222 34555556777889999987532 22222 21 255444434433
Q ss_pred EEc--CCCC---C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEE
Q psy3774 710 KYM--NGKF---K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIG 774 (963)
Q Consensus 710 ~Y~--g~~~---~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~ 774 (963)
+|. |... + ..|. -|-|+|. .+| ++|-|+.+-|++++.+.+. +.+|+-
T Consensus 83 H~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa---------------~Dm---Kgglaa~l~Al~~l~~~~~~~~~~i~l 144 (444)
T PRK07205 83 HLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGT---------------QDD---KGPSMAALYAVKALLDAGVQFNKRIRF 144 (444)
T ss_pred eeccCCCCCcccCCCCCCceEEECCEEEECCc---------------ccC---cHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 332 2211 1 1222 3666666 223 3678999999999988764 567766
Q ss_pred EEEeecc
Q psy3774 775 VIVASEN 781 (963)
Q Consensus 775 vi~~~EN 781 (963)
++-.-|=
T Consensus 145 ~~~~dEE 151 (444)
T PRK07205 145 IFGTDEE 151 (444)
T ss_pred EEECCcc
Confidence 6666554
No 117
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=47.02 E-value=17 Score=32.37 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.3
Q ss_pred EeeccCCCCCC-CCCCCEEEccCCeEEe
Q psy3774 777 VASENMLSGNS-TKPGDIVVSMSGKTIE 803 (963)
Q Consensus 777 ~~~ENm~~g~a-~kPgDVits~~GkTVE 803 (963)
-..+|.|...+ ++|||+|.+.||+.|.
T Consensus 16 ~V~~~spa~~aGL~~GDiI~~Ing~~v~ 43 (79)
T cd00991 16 GVIVGSPAENAVLHTGDVIYSINGTPIT 43 (79)
T ss_pred EECCCChHHhcCCCCCCEEEEECCEEcC
Confidence 34678877754 9999999999999886
No 118
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=45.80 E-value=2.2e+02 Score=34.10 Aligned_cols=63 Identities=6% Similarity=0.151 Sum_probs=40.7
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCC---CCCCeEEEEEE
Q psy3774 144 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGS---SEPPKLIIIKY 214 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS---~~~p~li~l~y 214 (963)
+-+.+-++|++.|+=.-+-..++++.++.++++|+++++.+ .+-+++.-.|+ ...|.++...+
T Consensus 5 ~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~--------~~n~~~~~~~~~g~~~~~~l~l~~H 70 (477)
T TIGR01893 5 RVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQDE--------VGNVLIRKPATPGYENHPPIVLQGH 70 (477)
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEeC--------CCeEEEEEcCCCCCCCCCeEEEEee
Confidence 34566777777764333447888999999999999998754 35566653332 34455655544
No 119
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=45.71 E-value=1.4e+02 Score=34.42 Aligned_cols=34 Identities=0% Similarity=-0.064 Sum_probs=26.5
Q ss_pred HHHhccCCCCCCCHHHHHHHHHHhhhcCC---CeEEE
Q psy3774 149 TKNLGNLSANICTPTYLENISKKLSFDYK---MDIEI 182 (963)
Q Consensus 149 aRdL~n~P~N~ltP~~~a~~a~~l~~~~g---v~v~v 182 (963)
.++|+..|+-.-+....++.+.+.++.+| ++++.
T Consensus 2 l~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~ 38 (373)
T TIGR01900 2 LQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFR 38 (373)
T ss_pred hHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEE
Confidence 57899999876777888999998888774 55554
No 120
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=45.30 E-value=18 Score=32.14 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.6
Q ss_pred EeeecCCCCCC-CCCCcEEEecCceEEE
Q psy3774 280 VASENMLSGNS-TKPGDIVVSMSGKTIE 306 (963)
Q Consensus 280 ~~~EN~~~~~a-~~pgDVi~~~~G~tvE 306 (963)
...+|.|...+ +++||+|.+.||+.|.
T Consensus 16 ~V~~~spa~~aGL~~GDiI~~Ing~~v~ 43 (79)
T cd00991 16 GVIVGSPAENAVLHTGDVIYSINGTPIT 43 (79)
T ss_pred EECCCChHHhcCCCCCCEEEEECCEEcC
Confidence 45678887754 9999999999999886
No 121
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=44.09 E-value=1.8e+02 Score=33.95 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHHHhccC-CCC---------CCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCC-CCCeEEEEE
Q psy3774 642 GIELTKNLGNL-SAN---------ICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSS-EPPKLIIIK 710 (963)
Q Consensus 642 g~~~aRdL~n~-P~N---------~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~-~~Prli~l~ 710 (963)
.+.+-++|++. |-| --.-...++...+.++++|++|++.+ .+.+.+.=.|+. ..|+++..-
T Consensus 9 ~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~~--------~~nl~a~~~g~~~~~~~l~l~g 80 (413)
T PRK09290 9 LWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVDA--------VGNLFGRLEGRDPDAPAVLTGS 80 (413)
T ss_pred HHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEcC--------CCcEEEEecCCCCCCCEEEEec
Confidence 34566777776 311 11134567777888888999998732 234555544432 234444433
Q ss_pred EcCCCCCCCcEEEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEEEEEeecc
Q psy3774 711 YMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 781 (963)
Q Consensus 711 Y~g~~~~~~~i~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~vi~~~EN 781 (963)
+.--- |. ||- .+| ++|.|+.+.++.++.+.+. +-+|+-+.-.-|=
T Consensus 81 H~DtV----p~-----------~g~--------~d~---k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE 127 (413)
T PRK09290 81 HLDTV----PN-----------GGR--------FDG---PLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEE 127 (413)
T ss_pred CccCC----CC-----------CCC--------cCC---HHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCc
Confidence 32110 00 221 123 5699999999999998875 4466666655554
No 122
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=43.94 E-value=2.6e+02 Score=33.47 Aligned_cols=64 Identities=8% Similarity=0.171 Sum_probs=41.7
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCC---CCCCeEEEEEEc
Q psy3774 641 KGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGS---SEPPKLIIIKYM 712 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS---~~~Prli~l~Y~ 712 (963)
+-+.+-++|++.|+=--.-..+++..++.++++|+++++.+ .+-+++.-.|+ ...|.++...+.
T Consensus 5 ~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~--------~~n~~~~~~~~~g~~~~~~l~l~~Hl 71 (477)
T TIGR01893 5 RVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQDE--------VGNVLIRKPATPGYENHPPIVLQGHM 71 (477)
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEeC--------CCeEEEEEcCCCCCCCCCeEEEEeec
Confidence 34567778888764323346788888888999999998754 35677664332 344666655553
No 123
>KOG3857|consensus
Probab=43.67 E-value=25 Score=40.39 Aligned_cols=41 Identities=15% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHHHHhhhhCCCeEEEeCHHH--------------HHhcCCCeEeeecCCCCC
Q psy3774 662 LENISKKLSFDYKMDIEIINREQ--------------MQRLKMGSLLSVTHGSSE 702 (963)
Q Consensus 662 la~~a~~l~~~~g~~v~V~d~~~--------------l~~~gmg~~laVg~GS~~ 702 (963)
+.+.|++..++.|+.++|+|+-+ .+++.+.+|+|||.||.+
T Consensus 86 ~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~ 140 (465)
T KOG3857|consen 86 LVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAH 140 (465)
T ss_pred cHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchh
Confidence 46788888899999999999754 578999999999999963
No 124
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=42.72 E-value=2.1e+02 Score=33.45 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCC-CCCeEEEEEEccCCCCCCcEEEcccceEEecCCCCC
Q psy3774 162 PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSS-EPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISI 240 (963)
Q Consensus 162 P~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~-~~p~li~l~y~~~~~~~~~i~lVGKGiTFDtGG~~l 240 (963)
-...+++.++.++++|++|++. +.+.+++.=.|+. ..|+++..-+.-. -|. ||-
T Consensus 36 e~~~a~~l~~~l~~~g~~~~~~--------~~~nl~a~~~g~~~~~~~l~l~gH~Dt----Vp~-----------~g~-- 90 (413)
T PRK09290 36 DLQARDLFAEWMEAAGLTVRVD--------AVGNLFGRLEGRDPDAPAVLTGSHLDT----VPN-----------GGR-- 90 (413)
T ss_pred HHHHHHHHHHHHHHcCCEEEEc--------CCCcEEEEecCCCCCCCEEEEecCccC----CCC-----------CCC--
Confidence 3567888888889999999873 2234555444432 2344444333211 000 120
Q ss_pred CCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEEEEEeeec
Q psy3774 241 KPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 284 (963)
Q Consensus 241 K~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~~~~~~EN 284 (963)
..| ++|.|+.+.++.++.+.+. +-+|+-+.-.-|=
T Consensus 91 ------~d~---k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE 127 (413)
T PRK09290 91 ------FDG---PLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEE 127 (413)
T ss_pred ------cCC---HHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCc
Confidence 122 6799999999999998775 3456555555454
No 125
>KOG0438|consensus
Probab=41.26 E-value=44 Score=37.67 Aligned_cols=51 Identities=35% Similarity=0.596 Sum_probs=39.2
Q ss_pred CCCCCCCeEEEEEEccCCCCCCcEEEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCCCcEEEEEEE
Q psy3774 201 HGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIV 280 (963)
Q Consensus 201 ~gS~~~p~li~l~y~~~~~~~~~i~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~vnv~~~~~ 280 (963)
+|+..+-+++.++|.|... .+|+||=.| |+|++ +|=
T Consensus 97 ~~~~~~e~v~~i~yDP~Rs--~~iaLv~~~----~~~~~--------------------------------------~Il 132 (312)
T KOG0438|consen 97 QGTTTEERVIEIEYDPGRS--AKIALVAGG----TGELR--------------------------------------YIL 132 (312)
T ss_pred ccccccceEEEEEECCCcc--ccEEEEecc----CCCee--------------------------------------EEE
Confidence 4444566999999998754 689999777 66653 466
Q ss_pred eeecCCCCCCCCCCcEEEecC
Q psy3774 281 ASENMLSGNSTKPGDIVVSMS 301 (963)
Q Consensus 281 ~~EN~~~~~a~~pgDVi~~~~ 301 (963)
.||||+ +||+|.+.+
T Consensus 133 a~egm~------aGD~i~ss~ 147 (312)
T KOG0438|consen 133 ATEGLK------AGDTILSSR 147 (312)
T ss_pred EecCCC------CCCcccccc
Confidence 799987 899998887
No 126
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=41.24 E-value=4.2e+02 Score=27.28 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=79.9
Q ss_pred eEeeecccccccccccCCCEEEEEEecCCCcccc-ccccC--chHHH----HHHHHc-CCCCCCCCCEEEEcccCCCCcc
Q psy3774 459 DFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSI-VKDID--KYGEI----TNILKS-GDLNEKLGSTLLLRNIQKINAK 530 (963)
Q Consensus 459 ~f~i~~~~~~~~~~~~~~d~lVv~v~e~~~l~~~-~~~ld--~~g~l----~~~i~~-~~f~gk~ge~~~l~~~~~~~~~ 530 (963)
++++. ..+..+.++|++|-|.......... ...+. -+..+ .+.++. +. -..|+.+..+. ...+.+
T Consensus 3 ~i~i~----~GdI~~~~~DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~--~~~G~~~~T~~-~~L~~k 75 (175)
T cd02907 3 TLSVI----KGDITRFPVDAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRKNGP--VPTGEVVVTSA-GKLPCK 75 (175)
T ss_pred EEEEE----ECCcceeecCEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHhcCC--CCCCcEEEecC-CCCCCC
Confidence 45666 5677788999999887665432211 11111 11222 222222 22 25688766554 445677
Q ss_pred EEEEEEcCCCCC----cCCHHHHHHHHHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHHHhcCcccCCCccCC
Q psy3774 531 RILLVNLGDKKK----KIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSK 606 (963)
Q Consensus 531 ~vllvGLG~~~~----~~~~~~~r~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~l~~Y~f~~yk~~ 606 (963)
+|+-+ .|..-. .-+.+.++++...+.+.+.+.+++++++..-.........+..++.+.+.+. +|- ++.
T Consensus 76 ~IiH~-v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~----~fl--~~~ 148 (175)
T cd02907 76 YVIHA-VGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVK----EFL--ETK 148 (175)
T ss_pred EEEEe-CCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH----HHH--Hhc
Confidence 77665 333011 1235678899999999999999999888654333333444444554444332 221 111
Q ss_pred CCCCccCceEEEEEec
Q psy3774 607 KKPIKINIKKIIFALD 622 (963)
Q Consensus 607 ~~~~~~~l~~l~l~~~ 622 (963)
+ ..+++|.|+.-
T Consensus 149 ~----~~l~~I~~v~~ 160 (175)
T cd02907 149 G----SALKEIYLVDY 160 (175)
T ss_pred C----CCccEEEEEEC
Confidence 1 24677888764
No 127
>KOG1402|consensus
Probab=40.48 E-value=73 Score=36.68 Aligned_cols=98 Identities=23% Similarity=0.331 Sum_probs=75.7
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccCCCCCCcEEEcccceE
Q psy3774 153 GNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVT 232 (963)
Q Consensus 153 ~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~~~~~~~i~lVGKGiT 232 (963)
+.+-.=+..|.-+-..+++||.+|++=. |.|+-+ .|=.+.-+|+..+|. +.++.|++.||++
T Consensus 217 QGEaGVvvP~~GYL~~vreLCtkynvl~-I~DEvQ-------------TGl~RTGk~la~d~e---nv~PDivilgKal- 278 (427)
T KOG1402|consen 217 QGEAGVVVPPPGYLKKVRELCTKYNVLL-IADEVQ-------------TGLARTGKLLACDYE---NVRPDIVILGKAL- 278 (427)
T ss_pred ccccceEeCCchhHHHHHHHHHhhcEEE-Eehhhh-------------hcccccCcEEEeehh---hcCCCeEEEeccc-
Confidence 3444456677788888999999987532 444433 466678899999994 3457799999997
Q ss_pred EecCCC--------------CCCCCCCccccccchhhHHHHHHHHHHHHhcC
Q psy3774 233 FDTGGI--------------SIKPSYSMDEMKYDMCGAASILGTLYAISEMN 270 (963)
Q Consensus 233 FDtGG~--------------~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~ 270 (963)
|||+ ++||+.+=.+.-..--|.|+-++++..|-+-+
T Consensus 279 --SGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eek 328 (427)
T KOG1402|consen 279 --SGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEK 328 (427)
T ss_pred --cCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHH
Confidence 7884 89999999999999999999999888776654
No 128
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=40.33 E-value=76 Score=37.36 Aligned_cols=77 Identities=26% Similarity=0.320 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEeeecCCCCCCCCCCcEEEecCceEEEeecCCc----------------------c
Q psy3774 256 AASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDA----------------------E 313 (963)
Q Consensus 256 aAaV~g~~~a~a~l~l~vnv~~~~~~~EN~~~~~a~~pgDVi~~~~G~tvEi~NTDA----------------------E 313 (963)
+|||+-+..++++ +..|| +..-|+.. |.+++..|+++.-+++=+||.+|-- +
T Consensus 93 ~aAVll~~~al~~---~~EvV--is~g~lV~-gg~~~v~d~~~~aG~~l~EvG~tn~t~~~d~~~AIne~ta~llkV~s~ 166 (395)
T COG1921 93 AAAVLLTLNALAE---GKEVV--VSRGELVE-GGAFRVPDIIRLAGAKLVEVGTTNRTHLKDYELAINENTALLLKVHSS 166 (395)
T ss_pred HHHHHHHHhhhcc---CCeEE--EEcccccc-CCCCChhHHHHHcCCEEEEecccCcCCHHHHHHHhccCCeeEEEEeec
Confidence 6777777777666 44443 56777777 8899999999999999999998742 1
Q ss_pred -----cceeehhhhhhhhhcCCcEEEEecc
Q psy3774 314 -----GRLILCDALTYVERFKPSVVIDIAT 338 (963)
Q Consensus 314 -----GRLvLADal~ya~~~~p~~iiD~AT 338 (963)
|-|-++|...-|++++.-.++|.|.
T Consensus 167 ~~~f~~~l~~~~l~~ia~~~~lpvivD~aS 196 (395)
T COG1921 167 NYGFTGMLSEEELVEIAHEKGLPVIVDLAS 196 (395)
T ss_pred cccccccccHHHHHHHHHHcCCCEEEecCC
Confidence 6777888888898888888999997
No 129
>PRK08737 acetylornithine deacetylase; Provisional
Probab=40.13 E-value=2.8e+02 Score=32.05 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=28.3
Q ss_pred HHHHHHHHhccCCCCC----CChHHHHHHHHHhhhhCCCeEEEeCH
Q psy3774 641 KGIELTKNLGNLSANI----CTPTYLENISKKLSFDYKMDIEIINR 682 (963)
Q Consensus 641 ~g~~~aRdL~n~P~N~----ltP~~la~~a~~l~~~~g~~v~V~d~ 682 (963)
+.+.+.++|+..|+-. .....+++..++.++ |+++++.+.
T Consensus 7 ~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~ 50 (364)
T PRK08737 7 STLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDH 50 (364)
T ss_pred HHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecC
Confidence 4567788899988742 122577777777765 899998863
No 130
>PRK06446 hypothetical protein; Provisional
Probab=39.84 E-value=3.9e+02 Score=31.50 Aligned_cols=118 Identities=11% Similarity=0.073 Sum_probs=70.4
Q ss_pred HHHHHHHHhccCCCCCCCH---HHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEccC-CC
Q psy3774 144 KGIELTKNLGNLSANICTP---TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNG-KF 219 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~ltP---~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~~-~~ 219 (963)
+.+.+.++|+..|+-.-.+ ...+++.++.++++|+++++.+.. +-..+++.-.+.. .|+++..-+.-- +.
T Consensus 3 ~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~-----~~~~lia~~~~~~-~~~vll~gH~DvVp~ 76 (436)
T PRK06446 3 EELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTK-----GHPVVYGEINVGA-KKTLLIYNHYDVQPV 76 (436)
T ss_pred hHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecC-----CCCEEEEEecCCC-CCEEEEEecccCCCC
Confidence 3567889999999965443 478888899999999999887532 2233443322222 344544433221 10
Q ss_pred ---C---CCc----E---EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHh-cCCCcEEEEEEEeeecC
Q psy3774 220 ---K---EAP----I---VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISE-MNLELNIIGVIVASENM 285 (963)
Q Consensus 220 ---~---~~~----i---~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~-l~l~vnv~~~~~~~EN~ 285 (963)
. ..| + -|-|+|. .+ |++|.|+.+.+++.+.+ .+++.+|+-++-.-|-.
T Consensus 77 ~~~~~W~~~Pf~~~~~dg~lyGRGa---------------~D---mKgglaa~l~A~~~l~~~~~~~~~i~~~~~~dEE~ 138 (436)
T PRK06446 77 DPLSEWKRDPFSATIENGRIYARGA---------------SD---NKGTLMARLFAIKHLIDKHKLNVNVKFLYEGEEEI 138 (436)
T ss_pred CccccccCCCCceEEECCEEEEEec---------------cC---CcHHHHHHHHHHHHHHHcCCCCCCEEEEEEccccc
Confidence 0 012 2 3556653 11 25678888888876643 45677887777666653
No 131
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=39.64 E-value=1.6e+02 Score=34.28 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCC-CCCeEEEEEEcCCCCCCCcEEEeccCeeeccCCCCC
Q psy3774 659 PTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSS-EPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISI 737 (963)
Q Consensus 659 P~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~-~~Prli~l~Y~g~~~~~~~i~LVGKGiTFDsGGisl 737 (963)
....++...+.++++|+++++.+ .+.+.+.=.|.. ..|+++...+.-- .-.||.
T Consensus 37 e~~~~~~l~~~l~~~G~~~~~~~--------~~nlia~~~g~~~~~~~l~~~~H~Dt---------------Vp~~g~-- 91 (414)
T PRK12890 37 ERAARALLAAWMRAAGLEVRRDA--------AGNLFGRLPGRDPDLPPLMTGSHLDT---------------VPNGGR-- 91 (414)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcC--------CCcEEEEeCCCCCCCCEEEEeCcccC---------------CCCCCC--
Confidence 45577778888889999999742 334555444432 2244444333211 111332
Q ss_pred CCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEEEEEeecc
Q psy3774 738 KPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 781 (963)
Q Consensus 738 Kp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~vi~~~EN 781 (963)
.+| ++|.|+.+.+++++.+.+. +-+|+-+.-..|=
T Consensus 92 ------~D~---~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE 128 (414)
T PRK12890 92 ------YDG---ILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEE 128 (414)
T ss_pred ------cCC---HHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeccc
Confidence 133 4599999999999988764 5667666666655
No 132
>PRK13381 peptidase T; Provisional
Probab=39.57 E-value=2.7e+02 Score=32.32 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCC-CeEEEEEE
Q psy3774 163 TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEP-PKLIIIKY 214 (963)
Q Consensus 163 ~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~-p~li~l~y 214 (963)
...+++.++.+++.|++....+ +.+.+++.=.|+... |.|+...+
T Consensus 31 ~~~~~~l~~~l~~~G~~~~~~~-------~~~nvi~~~~g~~~~~~~lll~~H 76 (404)
T PRK13381 31 HELAKLLADELRELGLEDIVID-------EHAIVTAKLPGNTPGAPRIGFIAH 76 (404)
T ss_pred HHHHHHHHHHHHHcCCCcEEEc-------CCeEEEEEEecCCCCCCeEEEEEE
Confidence 5677888888999999654443 466777764565432 55554433
No 133
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=39.42 E-value=3.3e+02 Score=31.46 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcC---CCC
Q psy3774 640 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN---GKF 716 (963)
Q Consensus 640 a~g~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g---~~~ 716 (963)
.+.+.+.|+|++.|+-.-.-...++...+.+++.|+++..++ .++.+++.- |+ .+|.++...+.- ...
T Consensus 13 ~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-------~~~n~~~~~-g~-~~~~l~l~~H~DtVp~~~ 83 (395)
T TIGR03320 13 GDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEID-------PMGNVLGYI-GH-GPKLIAMDAHIDTVGIGD 83 (395)
T ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEEC-------CCCCEEEEe-CC-CCcEEEEEecccccCCCC
Confidence 456889999999999666667788888888889999753333 234566653 43 235544433321 111
Q ss_pred ---C-CCcE-------EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEEE
Q psy3774 717 ---K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGV 775 (963)
Q Consensus 717 ---~-~~~i-------~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~v 775 (963)
. ..|. -|-|.|. .+|| +|.|+.+.+++++.+.+. +.+|+-+
T Consensus 84 ~~~w~~~Pf~~~~~~g~lyGrG~---------------~D~K---g~~aa~l~A~~~l~~~g~~~~~~i~~~ 137 (395)
T TIGR03320 84 SKQWQFDPYEGYEDEEIIYGRGA---------------SDQE---GGIASMVYAGKIIKDLGLLDDYTLLVT 137 (395)
T ss_pred ccccccCCCceEEECCEEEecCc---------------cCcc---chHHHHHHHHHHHHHcCCCCCceEEEE
Confidence 0 1122 2333433 2343 678899999999988764 4455433
No 134
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=39.04 E-value=4.4e+02 Score=30.62 Aligned_cols=124 Identities=17% Similarity=0.143 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhccCCCCC-CCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEcc-CCC
Q psy3774 142 ISKGIELTKNLGNLSANI-CTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN-GKF 219 (963)
Q Consensus 142 ia~~~~~aRdL~n~P~N~-ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~~-~~~ 219 (963)
..+...+.++|++.|+-. ..=..++++.++.++.+|+.++......=. +...+++.-.|....|.|+.+.+.- -+.
T Consensus 12 ~~~~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~--~~~n~~~~~~~~~~~~~l~l~~H~DvVP~ 89 (409)
T COG0624 12 LDDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGP--GRPNLVARLGGGDGGPTLLLGGHLDVVPA 89 (409)
T ss_pred hHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEEeecCCCC--CceEEEEEecCCCCCCeEEEeccccccCC
Confidence 344458899999999988 777889999999999999887766544222 3445666645544436666665532 111
Q ss_pred C-----C-CcEE-------EcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhc--CCCcEEEEEEEeeec
Q psy3774 220 K-----E-APIV-------LVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEM--NLELNIIGVIVASEN 284 (963)
Q Consensus 220 ~-----~-~~i~-------lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l--~l~vnv~~~~~~~EN 284 (963)
. + .|.. |-|+| .--|+++-++.+-+++++... .++.+|+-++-.-|-
T Consensus 90 g~~~~W~~~Pf~~~~~dg~lyGRG------------------~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE 151 (409)
T COG0624 90 GGGEDWTTDPFEPTIKDGKLYGRG------------------AADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEE 151 (409)
T ss_pred CCcccCccCCCccEEECCEEEecC------------------ccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccc
Confidence 1 1 1322 44444 334578999999999999984 567777766655554
Q ss_pred C
Q psy3774 285 M 285 (963)
Q Consensus 285 ~ 285 (963)
.
T Consensus 152 ~ 152 (409)
T COG0624 152 S 152 (409)
T ss_pred c
Confidence 3
No 135
>PRK13381 peptidase T; Provisional
Probab=38.52 E-value=3.1e+02 Score=31.91 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCC-CeEEEEEE
Q psy3774 660 TYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEP-PKLIIIKY 711 (963)
Q Consensus 660 ~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~-Prli~l~Y 711 (963)
...++..++.+++.|++....| +.+.+++.=.|+... |.++...+
T Consensus 31 ~~~~~~l~~~l~~~G~~~~~~~-------~~~nvi~~~~g~~~~~~~lll~~H 76 (404)
T PRK13381 31 HELAKLLADELRELGLEDIVID-------EHAIVTAKLPGNTPGAPRIGFIAH 76 (404)
T ss_pred HHHHHHHHHHHHHcCCCcEEEc-------CCeEEEEEEecCCCCCCeEEEEEE
Confidence 4567777788888999654443 567888875666443 66555444
No 136
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=36.66 E-value=7.2e+02 Score=28.72 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=70.2
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEE-EEEccCCC--
Q psy3774 143 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLII-IKYMNGKF-- 219 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~-l~y~~~~~-- 219 (963)
.+.+.+.++|++.|+-.-+-...++.+.+.++++|+++..++. .+.++++- |+. +|.++. -++.--+.
T Consensus 13 ~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~-------~~~v~~~~-g~~-~~~l~l~~H~DtVp~~~ 83 (395)
T TIGR03526 13 GDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDP-------MGNVLGYI-GHG-PKLIAMDAHIDTVGIGD 83 (395)
T ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcC-------CCcEEEEe-CCC-CCEEEEEeeccccCCCC
Confidence 3668999999999997777778889999999999987543432 34455553 443 355543 33332111
Q ss_pred -C---CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEEEEEeeec
Q psy3774 220 -K---EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 284 (963)
Q Consensus 220 -~---~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~~~~~~EN 284 (963)
. ..|. -+-|+|.+ + +++|.|+.+.+++++.+.+. +.+|+-+...-|-
T Consensus 84 ~~~W~~~Pf~~~~~~g~lyGrG~~---------------D---~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE 143 (395)
T TIGR03526 84 MDQWQFDPYEGYEDEEIIYGRGAS---------------D---QEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEE 143 (395)
T ss_pred cccccCCCCceEEECCEEEecCcc---------------c---cchhHHHHHHHHHHHHHcCCCCCceEEEEEecccc
Confidence 0 1121 24455531 2 34788999999999988764 3455433332344
No 137
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=36.26 E-value=25 Score=30.75 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=20.0
Q ss_pred eeccCCCCCC-CCCCCEEEccCCeEEe
Q psy3774 778 ASENMLSGNS-TKPGDIVVSMSGKTIE 803 (963)
Q Consensus 778 ~~ENm~~g~a-~kPgDVits~~GkTVE 803 (963)
..+|.|...+ ++|||+|.+.||+.|.
T Consensus 19 V~~~s~a~~aGl~~GD~I~~Ing~~v~ 45 (80)
T cd00990 19 VRDDSPADKAGLVAGDELVAVNGWRVD 45 (80)
T ss_pred ECCCChHHHhCCCCCCEEEEECCEEhH
Confidence 3566665544 9999999999999764
No 138
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=35.93 E-value=37 Score=28.77 Aligned_cols=29 Identities=38% Similarity=0.487 Sum_probs=21.9
Q ss_pred CCCCCEEEccCC---eEEe-ecCC-Ccccceehh
Q psy3774 788 TKPGDIVVSMSG---KTIE-VLDT-DAEGRLILC 816 (963)
Q Consensus 788 ~kPgDVits~~G---kTVE-V~NT-DAEGRLvLA 816 (963)
|+|||||+-.|| .||+ |.+. ++.++-+.|
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~~~~~~~~~~v~C 34 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVGPNAGASGGWVEC 34 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEccccccCCCCeEEE
Confidence 689999999998 5777 6555 566666655
No 139
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=35.40 E-value=2.7e+02 Score=32.16 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=64.5
Q ss_pred HHHhccCCCCCCChHHHHHHHHHhhhhCC---CeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcC---CCC---
Q psy3774 646 TKNLGNLSANICTPTYLENISKKLSFDYK---MDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN---GKF--- 716 (963)
Q Consensus 646 aRdL~n~P~N~ltP~~la~~a~~l~~~~g---~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g---~~~--- 716 (963)
.++|+..|+---.....++...+..+++| ++++..+ +.+.+.-.+ ..+|+++...+.- ...
T Consensus 2 l~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~~---------~nvva~~~~-~~~~~l~l~gH~DtVp~~~~~~ 71 (373)
T TIGR01900 2 LQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRFG---------DNVLARTDF-GKASRVILAGHIDTVPIADNFP 71 (373)
T ss_pred hHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEEC---------CEEEEecCC-CCCCeEEEeCccccccCCCCCh
Confidence 57899999976677788888888888774 5555431 245555322 2356655433321 100
Q ss_pred --CC-------------CcE---EEeccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhc----CCCcEEEE
Q psy3774 717 --KE-------------API---VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEM----NLELNIIG 774 (963)
Q Consensus 717 --~~-------------~~i---~LVGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l----~l~vnV~~ 774 (963)
.+ ..+ -|-|+|.+ +|| +|.|+.+.+++++.+. .++.+|+-
T Consensus 72 ~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~---------------DmK---gg~aa~l~a~~~l~~~~~~~~~~~~i~~ 133 (373)
T TIGR01900 72 PKWLEPGDSLIREEIAHAHPEDGILWGCGAT---------------DMK---AGDAVMLHLAATLDGRAPETELKHDLTL 133 (373)
T ss_pred hhhccCcccccccccccccccCCEEEecCch---------------hhh---HHHHHHHHHHHHHhhhccccCCCCCEEE
Confidence 00 001 24444432 333 5788889999988532 46778887
Q ss_pred EEEeeccCC
Q psy3774 775 VIVASENML 783 (963)
Q Consensus 775 vi~~~ENm~ 783 (963)
++-..|-..
T Consensus 134 ~~~~dEE~~ 142 (373)
T TIGR01900 134 IAYDCEEVA 142 (373)
T ss_pred EEEeccccc
Confidence 777777643
No 140
>KOG3857|consensus
Probab=34.98 E-value=41 Score=38.75 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcCCCeEEEeCHH--------------HHHHhcCCeEeeecCCCCC
Q psy3774 165 LENISKKLSFDYKMDIEIINRE--------------QMQRLKMGSLLSVTHGSSE 205 (963)
Q Consensus 165 ~a~~a~~l~~~~gv~v~v~~~~--------------~l~~~gm~~~laVg~gS~~ 205 (963)
+.+.+++..++.|++++|+|+- -.+++.+..|+|||.||.+
T Consensus 86 ~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~ 140 (465)
T KOG3857|consen 86 LVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAH 140 (465)
T ss_pred cHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchh
Confidence 4577888889999999999974 3578999999999999964
No 141
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=34.90 E-value=21 Score=31.01 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=19.7
Q ss_pred eccCCCCC-CCCCCCEEEccCCeEEe
Q psy3774 779 SENMLSGN-STKPGDIVVSMSGKTIE 803 (963)
Q Consensus 779 ~ENm~~g~-a~kPgDVits~~GkTVE 803 (963)
.+|.|... .++|||+|++.||+.|.
T Consensus 20 ~~~s~a~~~gl~~GD~I~~ing~~i~ 45 (79)
T cd00989 20 VPGSPAAKAGLKAGDRILAINGQKIK 45 (79)
T ss_pred CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 56666553 39999999999999765
No 142
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=33.72 E-value=30 Score=30.28 Aligned_cols=27 Identities=15% Similarity=0.344 Sum_probs=20.7
Q ss_pred EeeecCCCCCC-CCCCcEEEecCceEEE
Q psy3774 280 VASENMLSGNS-TKPGDIVVSMSGKTIE 306 (963)
Q Consensus 280 ~~~EN~~~~~a-~~pgDVi~~~~G~tvE 306 (963)
...+|.|...+ ++|||+|++.||+.|.
T Consensus 18 ~V~~~s~a~~aGl~~GD~I~~Ing~~v~ 45 (80)
T cd00990 18 FVRDDSPADKAGLVAGDELVAVNGWRVD 45 (80)
T ss_pred EECCCChHHHhCCCCCCEEEEECCEEhH
Confidence 34566665554 9999999999999764
No 143
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=31.96 E-value=26 Score=30.48 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=20.4
Q ss_pred eeecCCCCCC-CCCCcEEEecCceEEE
Q psy3774 281 ASENMLSGNS-TKPGDIVVSMSGKTIE 306 (963)
Q Consensus 281 ~~EN~~~~~a-~~pgDVi~~~~G~tvE 306 (963)
..+|.|...+ .+|||+|++.||+.+.
T Consensus 19 v~~~s~a~~~gl~~GD~I~~ing~~i~ 45 (79)
T cd00989 19 VVPGSPAAKAGLKAGDRILAINGQKIK 45 (79)
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEECC
Confidence 3567666543 9999999999999765
No 144
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=31.93 E-value=36 Score=29.65 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=19.2
Q ss_pred eccCCCCC-CCCCCCEEEccCCeEEe
Q psy3774 779 SENMLSGN-STKPGDIVVSMSGKTIE 803 (963)
Q Consensus 779 ~ENm~~g~-a~kPgDVits~~GkTVE 803 (963)
.+|-|... .++|||+|.+.||+.|+
T Consensus 34 ~~~s~a~~~gl~~GD~I~~ing~~i~ 59 (82)
T cd00992 34 EPGGPAERGGLRVGDRILEVNGVSVE 59 (82)
T ss_pred CCCChHHhCCCCCCCEEEEECCEEcC
Confidence 44555554 48999999999998764
No 145
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=31.85 E-value=3.1e+02 Score=31.99 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCC-CCCeEEEEEEccCCCCCCcEEEcccceEEecCCCC
Q psy3774 161 TPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSS-EPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGIS 239 (963)
Q Consensus 161 tP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~-~~p~li~l~y~~~~~~~~~i~lVGKGiTFDtGG~~ 239 (963)
.-...+++..+.++++|+++++.. .+.+.+.=.|.. ..|+|+...+.-.- | .||.
T Consensus 36 ~e~~~~~~l~~~l~~~G~~~~~~~--------~~nlia~~~g~~~~~~~l~~~~H~DtV----p-----------~~g~- 91 (414)
T PRK12890 36 EERAARALLAAWMRAAGLEVRRDA--------AGNLFGRLPGRDPDLPPLMTGSHLDTV----P-----------NGGR- 91 (414)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEcC--------CCcEEEEeCCCCCCCCEEEEeCcccCC----C-----------CCCC-
Confidence 346678888888999999999742 234444444432 22444443332110 0 0231
Q ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEEEEEEeeec
Q psy3774 240 IKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASEN 284 (963)
Q Consensus 240 lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~~~~~~~EN 284 (963)
.+| |+|.|+.+.+++++.+.+. +-+|+-+....|=
T Consensus 92 -------~D~---~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE 128 (414)
T PRK12890 92 -------YDG---ILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEE 128 (414)
T ss_pred -------cCC---HHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeccc
Confidence 123 5589999999999987664 4556655555554
No 146
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=31.18 E-value=22 Score=32.73 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=7.5
Q ss_pred CCCCCCCCEEEc
Q psy3774 785 GNSTKPGDIVVS 796 (963)
Q Consensus 785 g~a~kPgDVits 796 (963)
..+|||||||++
T Consensus 66 ~~~FrpGDIVrA 77 (82)
T PF10447_consen 66 YDCFRPGDIVRA 77 (82)
T ss_dssp GGT--SSSEEEE
T ss_pred HhccCCCCEEEE
Confidence 467888888876
No 147
>PRK08737 acetylornithine deacetylase; Provisional
Probab=31.14 E-value=4.4e+02 Score=30.43 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCCCC----CCHHHHHHHHHHhhhcCCCeEEEeCH
Q psy3774 144 KGIELTKNLGNLSANI----CTPTYLENISKKLSFDYKMDIEIINR 185 (963)
Q Consensus 144 ~~~~~aRdL~n~P~N~----ltP~~~a~~a~~l~~~~gv~v~v~~~ 185 (963)
+.+.+.++|+..|+-. .....++++.++.++ |+++++.+.
T Consensus 7 ~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~ 50 (364)
T PRK08737 7 STLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDH 50 (364)
T ss_pred HHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecC
Confidence 4567778898888732 223678888888875 899988863
No 148
>KOG1402|consensus
Probab=30.45 E-value=1.3e+02 Score=34.67 Aligned_cols=95 Identities=24% Similarity=0.333 Sum_probs=72.5
Q ss_pred CCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEEcCCCCCCCcEEEeccCeeecc
Q psy3774 653 SANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDT 732 (963)
Q Consensus 653 P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y~g~~~~~~~i~LVGKGiTFDs 732 (963)
-.=+..|.-.-..+++||.+|++= =|.|+-| .|=.+.-+|+..+|. +-++.|++.||++ |
T Consensus 220 aGVvvP~~GYL~~vreLCtkynvl-~I~DEvQ-------------TGl~RTGk~la~d~e---nv~PDivilgKal---S 279 (427)
T KOG1402|consen 220 AGVVVPPPGYLKKVRELCTKYNVL-LIADEVQ-------------TGLARTGKLLACDYE---NVRPDIVILGKAL---S 279 (427)
T ss_pred cceEeCCchhHHHHHHHHHhhcEE-EEehhhh-------------hcccccCcEEEeehh---hcCCCeEEEeccc---c
Confidence 344566667778899999999863 3555543 345567889999994 3467899999999 8
Q ss_pred CC--------------CCCCCCCChhhhcccchhhhHHHHHHHHHHhcC
Q psy3774 733 GG--------------ISIKPSYSMDEMKYDMCGAASILGTLYAISEMN 767 (963)
Q Consensus 733 GG--------------islKp~~~M~~MK~DM~GAAaVlga~~aia~l~ 767 (963)
|| +++||...=.+.-..--|.|+-++++.-|-+-+
T Consensus 280 GG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eek 328 (427)
T KOG1402|consen 280 GGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEK 328 (427)
T ss_pred CCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHH
Confidence 99 479999988888888888888888887776554
No 149
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=30.15 E-value=25 Score=32.33 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=9.1
Q ss_pred CCCCCCCcEEEec
Q psy3774 288 GNSTKPGDIVVSM 300 (963)
Q Consensus 288 ~~a~~pgDVi~~~ 300 (963)
.++|||||||++.
T Consensus 66 ~~~FrpGDIVrA~ 78 (82)
T PF10447_consen 66 YDCFRPGDIVRAR 78 (82)
T ss_dssp GGT--SSSEEEEE
T ss_pred HhccCCCCEEEEE
Confidence 5799999999873
No 150
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=29.33 E-value=49 Score=29.24 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=21.1
Q ss_pred EEeeccCCCCC-CCCCCCEEEccCCeEEe
Q psy3774 776 IVASENMLSGN-STKPGDIVVSMSGKTIE 803 (963)
Q Consensus 776 i~~~ENm~~g~-a~kPgDVits~~GkTVE 803 (963)
....+|-|... -.+|||+|++.||+.|.
T Consensus 18 ~~v~~~s~a~~~gl~~GD~I~~vng~~i~ 46 (85)
T cd00988 18 TSVLPGSPAAKAGIKAGDIIVAIDGEPVD 46 (85)
T ss_pred EEecCCCCHHHcCCCCCCEEEEECCEEcC
Confidence 34456666655 49999999999999753
No 151
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=28.56 E-value=43 Score=28.42 Aligned_cols=28 Identities=11% Similarity=0.343 Sum_probs=21.7
Q ss_pred EeeccCCCCC-CCCCCCEEEccCCeEEee
Q psy3774 777 VASENMLSGN-STKPGDIVVSMSGKTIEV 804 (963)
Q Consensus 777 ~~~ENm~~g~-a~kPgDVits~~GkTVEV 804 (963)
...+|.|... -++|||+|.+.||+.|.=
T Consensus 19 ~v~~~s~a~~~gl~~GD~I~~Ing~~v~~ 47 (70)
T cd00136 19 SVEPGSPAERAGLQAGDVILAVNGTDVKN 47 (70)
T ss_pred EeCCCCHHHHcCCCCCCEEEEECCEECCC
Confidence 3456777665 599999999999997643
No 152
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=27.86 E-value=3.5e+02 Score=31.71 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCC-CCCeEEEEEEccCCCCCCcEEEcccceEEecCCCCCCC
Q psy3774 164 YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSS-EPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKP 242 (963)
Q Consensus 164 ~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~-~~p~li~l~y~~~~~~~~~i~lVGKGiTFDtGG~~lK~ 242 (963)
..+++.++.+++.|++|++.. .+-+++.=.|+. ..|.|+...+.-.- ++ ||
T Consensus 41 ~~~~~l~~~l~~~G~~v~~~~--------~gNl~a~~~g~~~~~~~l~~~~H~DtV---p~------------gg----- 92 (414)
T PRK12891 41 EARDLFVAWARDAGCTVRVDA--------MGNLFARRAGRDPDAAPVMTGSHADSQ---PT------------GG----- 92 (414)
T ss_pred HHHHHHHHHHHHCCCEEEECC--------CCCEEEEecCCCCCCCeEEEEecccCC---CC------------Cc-----
Confidence 466777888889999999853 233445445543 23555555443210 00 12
Q ss_pred CCCccccccchhhHHHHHHHHHHHHhcCCC--cEEEEEEEeeec
Q psy3774 243 SYSMDEMKYDMCGAASILGTLYAISEMNLE--LNIIGVIVASEN 284 (963)
Q Consensus 243 ~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l~--vnv~~~~~~~EN 284 (963)
..+| ++|.|+.+.+++++.+.+.+ .+|.-+.-.-|=
T Consensus 93 ---~~D~---k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE 130 (414)
T PRK12891 93 ---RYDG---IYGVLGGLEVVRALNDAGIETERPVDVVIWTNEE 130 (414)
T ss_pred ---cccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccc
Confidence 1123 46888889999999887653 344433333443
No 153
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=27.81 E-value=6.8e+02 Score=29.94 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=66.8
Q ss_pred HHHHHHHHHhccCCCCC------------CCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEE
Q psy3774 143 SKGIELTKNLGNLSANI------------CTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLI 210 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~------------ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li 210 (963)
.+.+.+.++|+..|+=. -.....+++..++++++|+++++++... +.+ ++ |+.. |+|+
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~------~~~--~~-~~~~-~~l~ 82 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFDNYA------GHV--EY-GAGD-ERLG 82 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEecCCc------eeE--Ee-cCCC-CEEE
Confidence 35678999999999842 1224456666788899999999876210 111 22 2222 4444
Q ss_pred EE-EEccCCC---C-CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC--CcEEE
Q psy3774 211 II-KYMNGKF---K-EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL--ELNII 276 (963)
Q Consensus 211 ~l-~y~~~~~---~-~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l--~vnv~ 276 (963)
.. +|.--+. . ..|. -|.|+|.+ .|++|.|+.+-+++++.+.+. +.+|+
T Consensus 83 ~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~------------------D~Kg~~~a~l~a~~~l~~~~~~~~~~i~ 144 (466)
T TIGR01886 83 IIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGAS------------------DDKGPSLAAYYAMKILKELGLPPSKKIR 144 (466)
T ss_pred EEeecccCCCCCCCcCCCCCeEEECCEEEecCcc------------------ccchHHHHHHHHHHHHHHhCCCCCCCEE
Confidence 33 3322211 1 1222 34455532 235678888999999988764 56777
Q ss_pred EEEEeeec
Q psy3774 277 GVIVASEN 284 (963)
Q Consensus 277 ~~~~~~EN 284 (963)
-++..-|=
T Consensus 145 ~~~~~dEE 152 (466)
T TIGR01886 145 FVVGTNEE 152 (466)
T ss_pred EEEECccc
Confidence 77666544
No 154
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=27.63 E-value=55 Score=28.48 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=20.3
Q ss_pred EeeecCCCCC-CCCCCcEEEecCceEEE
Q psy3774 280 VASENMLSGN-STKPGDIVVSMSGKTIE 306 (963)
Q Consensus 280 ~~~EN~~~~~-a~~pgDVi~~~~G~tvE 306 (963)
...+|.|... .++|||+|.+.||+.++
T Consensus 32 ~v~~~s~a~~~gl~~GD~I~~ing~~i~ 59 (82)
T cd00992 32 RVEPGGPAERGGLRVGDRILEVNGVSVE 59 (82)
T ss_pred EECCCChHHhCCCCCCCEEEEECCEEcC
Confidence 3455666555 48999999999998764
No 155
>KOG2276|consensus
Probab=27.39 E-value=2.3e+02 Score=33.63 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=67.5
Q ss_pred cCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhc-------CCCeEeeecCCCC--CCCeEEEEEEc--CCCC---
Q psy3774 651 NLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRL-------KMGSLLSVTHGSS--EPPKLIIIKYM--NGKF--- 716 (963)
Q Consensus 651 n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~-------gmg~~laVg~GS~--~~Prli~l~Y~--g~~~--- 716 (963)
--|.+..--..+++.+++...+.|-.++..|--.= .+ .=+-+|++ .||. ..-.||-.+|. |...
T Consensus 33 ~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q-~~~~g~~v~lPpvvl~~-~Gsdp~KktvlvYgHlDVqpA~~~Dg 110 (473)
T KOG2276|consen 33 ADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQ-SLPDGQIVPLPPVVLGV-LGSDPSKKTVLVYGHLDVQPANLEDG 110 (473)
T ss_pred cCccccHHHHHHHHHHHHHHHHhCCceeeeecccC-CCCCCcccccChhhhhc-ccCCCCcceEEEEeeeeeeecCCCCC
Confidence 44666666677888999988989988877764321 10 01123333 4554 33344444443 2221
Q ss_pred -CCCcEEE-------eccCeeeccCCCCCCCCCChhhhcccchhhhHHHHHHHHHHhcC--CCcEEEEEEEeecc
Q psy3774 717 -KEAPIVL-------VGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN--LELNIIGVIVASEN 781 (963)
Q Consensus 717 -~~~~i~L-------VGKGiTFDsGGislKp~~~M~~MK~DM~GAAaVlga~~aia~l~--l~vnV~~vi~~~EN 781 (963)
+..|..| -|+|.|=| .+=-++.+-+|+|+-+++ +|+||+.++=..|-
T Consensus 111 W~TdPF~Lt~~~GkL~GRG~TDd------------------kGPv~~wi~av~a~~~~g~~lpvnv~f~~EgmEE 167 (473)
T KOG2276|consen 111 WNTDPFTLTEDDGKLFGRGATDD------------------KGPVLSWIHAVKALQQLGIDLPVNVVFVFEGMEE 167 (473)
T ss_pred CcCCCeEEEEECCEEeccCcCCC------------------CccchHHHHHHHHHHHhCccccceEEEEEEechh
Confidence 1234433 36666544 445688899999999987 69999998766654
No 156
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=27.32 E-value=45 Score=28.27 Aligned_cols=28 Identities=11% Similarity=0.402 Sum_probs=22.1
Q ss_pred EEeeecCCCCC-CCCCCcEEEecCceEEE
Q psy3774 279 IVASENMLSGN-STKPGDIVVSMSGKTIE 306 (963)
Q Consensus 279 ~~~~EN~~~~~-a~~pgDVi~~~~G~tvE 306 (963)
....+|.|... ..+|||+|.+.||+.|.
T Consensus 18 ~~v~~~s~a~~~gl~~GD~I~~Ing~~v~ 46 (70)
T cd00136 18 LSVEPGSPAERAGLQAGDVILAVNGTDVK 46 (70)
T ss_pred EEeCCCCHHHHcCCCCCCEEEEECCEECC
Confidence 34567777766 59999999999999764
No 157
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=26.97 E-value=4.3e+02 Score=30.78 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCC-CeEEEEEEcCCCCCCCcEEEeccCeeeccCCCCCCC
Q psy3774 661 YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEP-PKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKP 739 (963)
Q Consensus 661 ~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~-Prli~l~Y~g~~~~~~~i~LVGKGiTFDsGGislKp 739 (963)
..++..++.+++.|+++++.+ ++.+.++=.|+..+ |.++...+.-.-. + ||.
T Consensus 32 ~~~~~l~~~~~~~G~~~~~~~--------~~nl~a~~~g~~~~~~~l~~~~H~DtV~-------~--------gg~---- 84 (401)
T TIGR01879 32 EAQDLFKKRMRAAGLEVRFDE--------VGNLIGRKEGTEPPLEVVLSGSHIDTVV-------N--------GGN---- 84 (401)
T ss_pred HHHHHHHHHHHHCCCEEEEec--------CCcEEEEecCCCCCCCEEEEecccccCC-------C--------CCc----
Confidence 356667777788899999743 35677776665432 5666554432110 0 221
Q ss_pred CCChhhhcccchhhhHHHHHHHHHHhcCC--CcEEEEEEEeec
Q psy3774 740 SYSMDEMKYDMCGAASILGTLYAISEMNL--ELNIIGVIVASE 780 (963)
Q Consensus 740 ~~~M~~MK~DM~GAAaVlga~~aia~l~l--~vnV~~vi~~~E 780 (963)
.+++ .|.|+.+.+++++.+.+. +-+|.-+.-+.|
T Consensus 85 ----~dg~---~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dE 120 (401)
T TIGR01879 85 ----FDGQ---LGVLAGIEVVDALKEAYVVPLHPIEVVAFTEE 120 (401)
T ss_pred ----cCCH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Confidence 1112 388999999999999865 455555444443
No 158
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=26.69 E-value=59 Score=28.72 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=21.0
Q ss_pred EeeecCCCCC-CCCCCcEEEecCceEEE
Q psy3774 280 VASENMLSGN-STKPGDIVVSMSGKTIE 306 (963)
Q Consensus 280 ~~~EN~~~~~-a~~pgDVi~~~~G~tvE 306 (963)
...+|.|... -.+|||+|++.||+.|.
T Consensus 19 ~v~~~s~a~~~gl~~GD~I~~vng~~i~ 46 (85)
T cd00988 19 SVLPGSPAAKAGIKAGDIIVAIDGEPVD 46 (85)
T ss_pred EecCCCCHHHcCCCCCCEEEEECCEEcC
Confidence 4566766655 48999999999999753
No 159
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=26.08 E-value=47 Score=29.52 Aligned_cols=25 Identities=24% Similarity=0.601 Sum_probs=19.1
Q ss_pred eccCCCC-CCCCCCCEEEccCCeEEe
Q psy3774 779 SENMLSG-NSTKPGDIVVSMSGKTIE 803 (963)
Q Consensus 779 ~ENm~~g-~a~kPgDVits~~GkTVE 803 (963)
.+|-|.. .-++|||+|.+.||+.|.
T Consensus 32 ~~~s~a~~~gl~~GD~I~~Ing~~i~ 57 (90)
T cd00987 32 DPGSPAAKAGLKPGDVILAVNGKPVK 57 (90)
T ss_pred CCCCHHHHcCCCcCCEEEEECCEECC
Confidence 4565554 338999999999999764
No 160
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=25.03 E-value=49 Score=29.36 Aligned_cols=26 Identities=23% Similarity=0.593 Sum_probs=19.7
Q ss_pred eeecCCCCC-CCCCCcEEEecCceEEE
Q psy3774 281 ASENMLSGN-STKPGDIVVSMSGKTIE 306 (963)
Q Consensus 281 ~~EN~~~~~-a~~pgDVi~~~~G~tvE 306 (963)
..+|.|... -++|||+|++.||+.|.
T Consensus 31 v~~~s~a~~~gl~~GD~I~~Ing~~i~ 57 (90)
T cd00987 31 VDPGSPAAKAGLKPGDVILAVNGKPVK 57 (90)
T ss_pred ECCCCHHHHcCCCcCCEEEEECCEECC
Confidence 345666553 38999999999999764
No 161
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=24.47 E-value=2.7e+02 Score=32.24 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=47.7
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHhhhhCCCeEEEeCHHHHHhcCCCeEeeecCCCCCCCeEEEEEE
Q psy3774 643 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKY 711 (963)
Q Consensus 643 ~~~aRdL~n~P~N~ltP~~la~~a~~l~~~~g~~v~V~d~~~l~~~gmg~~laVg~GS~~~Prli~l~Y 711 (963)
..+-++|++.|+---.....++..++..++++.++++ | +||.++++-+|...+|+++...+
T Consensus 6 ~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~-D-------~~Gnlia~~~g~~~~~~v~l~aH 66 (343)
T TIGR03106 6 TETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYEL-T-------RRGAIRATLPGREATPARAVVTH 66 (343)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEE-C-------CCeEEEEEECCCCCCCeEEEEEe
Confidence 4567899999997777788888899999999999886 2 69999998777555566555443
No 162
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=23.97 E-value=1.1e+03 Score=27.02 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=62.8
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEE-EEccCCCC-
Q psy3774 143 SKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII-KYMNGKFK- 220 (963)
Q Consensus 143 a~~~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l-~y~~~~~~- 220 (963)
.+.+.+.|+|++.|+-.-.-...+++..+.++++|+++..++ ..+.+++.- |+ .+|.++.. ++.--+..
T Consensus 13 ~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-------~~~n~~~~~-g~-~~~~l~l~~H~DtVp~~~ 83 (395)
T TIGR03320 13 GDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEID-------PMGNVLGYI-GH-GPKLIAMDAHIDTVGIGD 83 (395)
T ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEEC-------CCCCEEEEe-CC-CCcEEEEEecccccCCCC
Confidence 466889999999999766667888999999999999743333 134455553 43 23554333 33211110
Q ss_pred -----CCcE-------EEcccceEEecCCCCCCCCCCccccccchhhHHHHHHHHHHHHhcCC
Q psy3774 221 -----EAPI-------VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL 271 (963)
Q Consensus 221 -----~~~i-------~lVGKGiTFDtGG~~lK~~~~M~~Mk~Dm~GaAaV~g~~~a~a~l~l 271 (963)
..|. -|-|+|. .+| ++|.|+.+.+++++.+.+.
T Consensus 84 ~~~w~~~Pf~~~~~~g~lyGrG~---------------~D~---Kg~~aa~l~A~~~l~~~g~ 128 (395)
T TIGR03320 84 SKQWQFDPYEGYEDEEIIYGRGA---------------SDQ---EGGIASMVYAGKIIKDLGL 128 (395)
T ss_pred ccccccCCCceEEECCEEEecCc---------------cCc---cchHHHHHHHHHHHHHcCC
Confidence 1122 1223331 223 4788999999999988764
No 163
>PRK04143 hypothetical protein; Provisional
Probab=23.96 E-value=1.1e+03 Score=26.59 Aligned_cols=130 Identities=14% Similarity=0.083 Sum_probs=72.8
Q ss_pred eeEeeecccccccccccCCCEEEEEEecCCCc--cccccccC------chHHH----HHHHHcCCCCCCCCCEEEEcccC
Q psy3774 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKL--SSIVKDID------KYGEI----TNILKSGDLNEKLGSTLLLRNIQ 525 (963)
Q Consensus 458 M~f~i~~~~~~~~~~~~~~d~lVv~v~e~~~l--~~~~~~ld------~~g~l----~~~i~~~~f~gk~ge~~~l~~~~ 525 (963)
.++++. ..+..+.++|++|=+..+.-.. .+....+| .+..| .++++.....-..|+...... .
T Consensus 83 ~~i~i~----~GDIt~l~vDAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~iT~~-~ 157 (264)
T PRK04143 83 DNIFLW----QGDITRLKVDAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKITRA-Y 157 (264)
T ss_pred CEEEEE----ECCcceeecCEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEEecC-C
Confidence 356676 5677788899998876653211 01111222 12223 334444333345677766553 3
Q ss_pred CCCccEEEE-EEc----CCCCCcCCHHHHHHHHHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHHHHHH
Q psy3774 526 KINAKRILL-VNL----GDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIII 593 (963)
Q Consensus 526 ~~~~~~vll-vGL----G~~~~~~~~~~~r~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~ 593 (963)
+.+.+.|+= ||- |+ ...-..+.++++...+.+.+.+.+++++++..-+........+..++.+++.+
T Consensus 158 nLp~kyVIHtVgP~~~~g~-~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv 229 (264)
T PRK04143 158 NLPAKYVIHTVGPIIRKQP-VSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTV 229 (264)
T ss_pred CCCCCEEEEECCCcccCCC-CCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHH
Confidence 456676552 342 12 12234567888888888888889999998876544444444344444444433
No 164
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=23.21 E-value=2.8e+02 Score=32.03 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=49.4
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHhhhcCCCeEEEeCHHHHHHhcCCeEeeecCCCCCCCeEEEEEEc
Q psy3774 146 IELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM 215 (963)
Q Consensus 146 ~~~aRdL~n~P~N~ltP~~~a~~a~~l~~~~gv~v~v~~~~~l~~~gm~~~laVg~gS~~~p~li~l~y~ 215 (963)
..+-++|++.|+-.-.-...++..++.+++++.++++ | ++|.++++=+|...+|+++...+-
T Consensus 6 ~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~-D-------~~Gnlia~~~g~~~~~~v~l~aHm 67 (343)
T TIGR03106 6 TETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYEL-T-------RRGAIRATLPGREATPARAVVTHL 67 (343)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEE-C-------CCeEEEEEECCCCCCCeEEEEEee
Confidence 4567899999987778889999999999999998886 2 599999986775555777766663
No 165
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=23.04 E-value=7.1e+02 Score=24.23 Aligned_cols=118 Identities=8% Similarity=0.126 Sum_probs=64.2
Q ss_pred cccccccCCCEEEEEEecCCCccc-cccccC--chHHHH-HHHHcCCCCCCCCCEEEEcccCCCCccEEEE-EEcCCCCC
Q psy3774 468 TTSIMSLKTDCLVVGIFKKNKLSS-IVKDID--KYGEIT-NILKSGDLNEKLGSTLLLRNIQKINAKRILL-VNLGDKKK 542 (963)
Q Consensus 468 ~~~~~~~~~d~lVv~v~e~~~l~~-~~~~ld--~~g~l~-~~i~~~~f~gk~ge~~~l~~~~~~~~~~vll-vGLG~~~~ 542 (963)
..+..+.+.|++|=+......+.. ....+. .+..+. +..+.+. -+.|+.+... ..+.+.++|+= ++.-. ..
T Consensus 6 ~GdI~~~~~DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~~--~~~G~~~~t~-~~~l~~k~Iih~~~~~~-~~ 81 (133)
T cd03330 6 QGDITKVDADAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKAP--IPVGEAVITG-AGDLPARYVIHAATMEE-PG 81 (133)
T ss_pred EcccccccCCEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcCC--CCCCeEEEEe-CCCCCCCEEEEeCCCCC-CC
Confidence 456777889999988776544322 111111 222222 2333333 3467776543 23445565543 33222 12
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCceEEEecCCCcccccchHHHHHHH
Q psy3774 543 KIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRT 589 (963)
Q Consensus 543 ~~~~~~~r~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 589 (963)
..+.+.++++...+.+.+.+.+.+++++..-.......+.+...+.+
T Consensus 82 ~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~ 128 (133)
T cd03330 82 RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLM 128 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHH
Confidence 34577889988888888888888888775433333333333333333
No 166
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=22.64 E-value=8e+02 Score=24.71 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=57.5
Q ss_pred cccccccCCCEEEEEEecCCCcc--ccccccC----------chHHHHHHHHcCCCCCCCCCEEEEcccCCCCccEEEEE
Q psy3774 468 TTSIMSLKTDCLVVGIFKKNKLS--SIVKDID----------KYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLV 535 (963)
Q Consensus 468 ~~~~~~~~~d~lVv~v~e~~~l~--~~~~~ld----------~~g~l~~~i~~~~f~gk~ge~~~l~~~~~~~~~~vllv 535 (963)
..+..+.+.|++|=+..+..... .....+| +.....++++...-.-..|+...... .+.+.+.|+=
T Consensus 6 ~GdIt~~~~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~~-~~L~~k~VIH- 83 (147)
T cd02906 6 KGDITTLKVDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITPG-YNLPAKYVIH- 83 (147)
T ss_pred ECCcCCccCCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEeC-CCCCCCEEEE-
Confidence 45666778899887766532210 0001111 22233334443221225677776654 3345565443
Q ss_pred EcCCC--CC---cCCHHHHHHHHHHHHHHHhhcCCceEEEecCC
Q psy3774 536 NLGDK--KK---KIKESNFIKIIQSIMNVFCNIGASNLLLMLPF 574 (963)
Q Consensus 536 GLG~~--~~---~~~~~~~r~a~~~a~~~l~~~~~~~~~~~~~~ 574 (963)
-.|.. .. .-....++++...+.+.+.+.+++++++..-.
T Consensus 84 avgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~ 127 (147)
T cd02906 84 TVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCIS 127 (147)
T ss_pred ECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 33330 00 12456789999999999999999998876543
No 167
>PF11330 DUF3132: Protein of unknown function (DUF3132); InterPro: IPR021479 This entry is represented by the Citrus psorosis virus, 54kDa protein; it is a family of uncharacterised viral proteins.
Probab=21.89 E-value=1.2e+02 Score=28.44 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=43.5
Q ss_pred CCCcEEEEEEEe-eecCCCCCCCCCCcEEEecCceEEEeecCCcccceeehhhhhh
Q psy3774 270 NLELNIIGVIVA-SENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTY 324 (963)
Q Consensus 270 ~l~vnv~~~~~~-~EN~~~~~a~~pgDVi~~~~G~tvEi~NTDAEGRLvLADal~y 324 (963)
.+--|+..+--+ -|-.|+|.-.--+||+--.+|.-|-|...-.|||+++-|-++-
T Consensus 54 slgdnilsytllreeghidgmrtagddvllekdgevvmildsrdegrmwikddvwa 109 (124)
T PF11330_consen 54 SLGDNILSYTLLREEGHIDGMRTAGDDVLLEKDGEVVMILDSRDEGRMWIKDDVWA 109 (124)
T ss_pred cccchhhhhhhhhhccccccccccCCeEEEecCCcEEEEEeccccCceeeechhHH
Confidence 334444444333 3678899999999999999999999999999999999987653
No 168
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.26 E-value=76 Score=27.12 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=27.0
Q ss_pred EEEEEEEeeccCCC-----CCCCCCCCEEEccCCeEEeecCCCc-ccceeh
Q psy3774 771 NIIGVIVASENMLS-----GNSTKPGDIVVSMSGKTIEVLDTDA-EGRLIL 815 (963)
Q Consensus 771 nV~~vi~~~ENm~~-----g~a~kPgDVits~~GkTVEV~NTDA-EGRLvL 815 (963)
++.|.+|..|--.. ++.|++||.|+ +.|.+.|. +||+.|
T Consensus 23 ~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~------~~v~~~d~~~~~i~l 67 (68)
T cd05707 23 GVDARVRVSELSDSYLKDWKKRFKVGQLVK------GKIVSIDPDNGRIEM 67 (68)
T ss_pred CCEEEEEHHHCCchhhcCHhhccCCCCEEE------EEEEEEeCCCCEEec
Confidence 47788888754222 45688898887 46788887 566655
No 169
>KOG0884|consensus
Probab=21.08 E-value=44 Score=32.95 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=41.7
Q ss_pred HcCCcEeeCCCChhhHhhcCCCc---ccccCCCCCCcchhHHHHHHHhccCCCCeEEEeeccCCcc
Q psy3774 872 MSGDTAWNMPIEDRYQKQLKSNF---ADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWK 934 (963)
Q Consensus 872 ~~gE~~W~lPl~~~y~~~lkS~v---ADl~N~g~~~~GaitAA~FL~~Fv~~~pWaHLDIAG~a~~ 934 (963)
+-|+.+|-=|+.+||.+.||.++ --|.|-|...-||. -|+.--.-.|||+--|-|.
T Consensus 61 rgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sq-------ffity~kq~hldmkytvfg 119 (161)
T KOG0884|consen 61 RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQ-------FFITYGKQPHLDMKYTVFG 119 (161)
T ss_pred CCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCce-------EEEEecCCCccceeEeeee
Confidence 67899999999999999999764 56777775544542 3555445679999877664
No 170
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=20.17 E-value=76 Score=27.55 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=0.0
Q ss_pred EEEEEeeccCCCCCC-CCCCCEEEccCCeEE
Q psy3774 773 IGVIVASENMLSGNS-TKPGDIVVSMSGKTI 802 (963)
Q Consensus 773 ~~vi~~~ENm~~g~a-~kPgDVits~~GkTV 802 (963)
+-+-..-+|-|...+ ++|||+|.+.||+.+
T Consensus 28 ~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v 58 (85)
T smart00228 28 VVVSSVVPGSPAAKAGLKVGDVILEVNGTSV 58 (85)
T ss_pred EEEEEECCCCHHHHcCCCCCCEEEEECCEEC
No 171
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=20.13 E-value=1.1e+03 Score=27.64 Aligned_cols=112 Identities=12% Similarity=0.150 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhhCCCe-EEEeCHHHHHhcCCCeEeeecCCCCC--CCeEEEEEEcCC----CCCCCcEEEe---ccCeee
Q psy3774 661 YLENISKKLSFDYKMD-IEIINREQMQRLKMGSLLSVTHGSSE--PPKLIIIKYMNG----KFKEAPIVLV---GKGVTF 730 (963)
Q Consensus 661 ~la~~a~~l~~~~g~~-v~V~d~~~l~~~gmg~~laVg~GS~~--~Prli~l~Y~g~----~~~~~~i~LV---GKGiTF 730 (963)
.+|+..++..+++|++ |++ | .+.|-+++.=.|+.. .|.++...+.-. ...-+|++.- |+=|++
T Consensus 34 ~~a~~l~~~l~~lG~~~v~~-d------~~~gnv~~~~~~~~~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~ 106 (410)
T TIGR01882 34 TFGNMLVDDLKSLGLQDAHY-D------EKNGYVIATIPSNTDKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQ 106 (410)
T ss_pred HHHHHHHHHHHHcCCceEEE-c------CCceEEEEEecCCCCCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeee
Confidence 4677777778888997 777 4 227888887445443 366666666432 2222444431 211222
Q ss_pred -ccCCCCCCCCC------------------Chhhhcccc-hhhhHHHHHHHHHHhc-CC-CcEEEEEEEeecc
Q psy3774 731 -DTGGISIKPSY------------------SMDEMKYDM-CGAASILGTLYAISEM-NL-ELNIIGVIVASEN 781 (963)
Q Consensus 731 -DsGGislKp~~------------------~M~~MK~DM-~GAAaVlga~~aia~l-~l-~vnV~~vi~~~EN 781 (963)
+..++-|+|.. -... .|| +|-|+++.+++++.+. ++ +-+|.-+.-..|=
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G--~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE 177 (410)
T TIGR01882 107 LGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLG--ADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEE 177 (410)
T ss_pred cCCCCeEEChHhChhHHhccCceEEEcCCCEeec--ccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECccc
Confidence 11122222221 0111 555 5689999999999875 33 4456666555555
Done!