RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3774
(963 letters)
>gnl|CDD|234863 PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.
Length = 483
Score = 600 bits (1550), Expect = 0.0
Identities = 234/504 (46%), Positives = 327/504 (64%), Gaps = 29/504 (5%)
Query: 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKL 515
M+F +K + S K+DCLVVG+ ++ LS + +DK G ++ +LK GD K
Sbjct: 1 MEFSVK----SGSPEKQKSDCLVVGVPER--LSPAAEQLDKASDGYLSALLKRGDFKGKA 54
Query: 516 GSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFN 575
G TLLL + + A+R+LLV LG K++++ E K ++ L
Sbjct: 55 GETLLLHAVPGVLAERVLLVGLG-KEEELDEEQLRKAAGKAARALKKTKVKEAVIFLTEL 113
Query: 576 KIEKYNLSCLIIRTIII-ISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAII 634
R LYR D KSKK+P + ++K++F + + + AI
Sbjct: 114 HTYW------KARAAAEGALLGLYRFDKYKSKKEP-RRPLEKLVFLVP-TRLTEAEKAIA 165
Query: 635 YGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLL 694
+G AI++G+ L ++L N NI TP YL +K+L+ +Y +++E+++ ++M++L MG+LL
Sbjct: 166 HGEAIAEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALL 225
Query: 695 SVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAA 754
+V GS+ PP+LI+++Y GK PI LVGKG+TFD+GGIS+KP+ MDEMKYDM GAA
Sbjct: 226 AVGQGSANPPRLIVLEYKGGK---KPIALVGKGLTFDSGGISLKPAAGMDEMKYDMGGAA 282
Query: 755 SILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI 814
++LGT+ A++E+ L +N++GV+ A ENM SGN+ +PGD++ SMSGKTIEVL+TDAEGRL+
Sbjct: 283 AVLGTMRALAELKLPVNVVGVVAACENMPSGNAYRPGDVLTSMSGKTIEVLNTDAEGRLV 342
Query: 815 LCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 874
L DALTY ERFKP +ID+ATLTGACVVALGHH +GL S NDE L +LL+AG+ SG
Sbjct: 343 LADALTYAERFKPDAIIDVATLTGACVVALGHHTAGLMSNNDE----LADELLKAGEESG 398
Query: 875 DTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWK 934
+ AW +P+ D YQ+QLKS FAD++NIG +ITAACFL F +KY WAHLDIAG AW
Sbjct: 399 ERAWRLPLGDEYQEQLKSPFADMANIGGRPGGAITAACFLSRFVEKYPWAHLDIAGTAWN 458
Query: 935 SGDK----KGATGRPVTLLTYYLM 954
S KGATGR V LL +L
Sbjct: 459 SKAWGYNPKGATGRGVRLLVQFLE 482
Score = 565 bits (1459), Expect = 0.0
Identities = 223/473 (47%), Positives = 311/473 (65%), Gaps = 43/473 (9%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKLGSTLLLRNIQKINAK 59
K+DCLVVG+ ++ LS + +DK G ++ +LK GD K G TLLL + + A+
Sbjct: 12 KQKSDCLVVGVPER--LSPAAEQLDKASDGYLSALLKRGDFKGKAGETLLLHAVPGVLAE 69
Query: 60 RILLVNLGASNLLLMLPFNKIEKY------NLSCLIIRTIIIISDNL------------- 100
R+LLV LG L ++ K L ++ +I L
Sbjct: 70 RVLLVGLGKEEEL---DEEQLRKAAGKAARALKKTKVKEAVIFLTELHTYWKARAAAEGA 126
Query: 101 ----YRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLS 156
YR D KSKK+P + ++K++F + + + AI +G AI++G+ L ++L N
Sbjct: 127 LLGLYRFDKYKSKKEP-RRPLEKLVFLVP-TRLTEAEKAIAHGEAIAEGVNLARDLVNEP 184
Query: 157 ANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMN 216
NI TP YL +K+L+ +Y +++E+++ ++M++L MG+LL+V GS+ PP+LI+++Y
Sbjct: 185 PNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVLEYKG 244
Query: 217 GKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNII 276
GK PI LVGKG+TFD+GGIS+KP+ MDEMKYDM GAA++LGT+ A++E+ L +N++
Sbjct: 245 GK---KPIALVGKGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELKLPVNVV 301
Query: 277 GVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDI 336
GV+ A ENM SGN+ +PGD++ SMSGKTIEVL+TDAEGRL+L DALTY ERFKP +ID+
Sbjct: 302 GVVAACENMPSGNAYRPGDVLTSMSGKTIEVLNTDAEGRLVLADALTYAERFKPDAIIDV 361
Query: 337 ATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSN 396
ATLTGACVVALGHH +GL S NDE L +LL+AG+ SG+ AW +P+ D YQ+QLKS
Sbjct: 362 ATLTGACVVALGHHTAGLMSNNDE----LADELLKAGEESGERAWRLPLGDEYQEQLKSP 417
Query: 397 FADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKSGDK----KGAT 445
FAD++NIG +ITAACFL F +KY WAHLDIAG AW S KGAT
Sbjct: 418 FADMANIGGRPGGAITAACFLSRFVEKYPWAHLDIAGTAWNSKAWGYNPKGAT 470
>gnl|CDD|238247 cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal
and catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal
of amino acids from the N-terminus of a protein and play
a key role in protein degradation and in the metabolism
of biologically active peptides. They do not contain
HEXXH motif (which is used as one of the signature
patterns to group the peptidase families) in the
metal-binding site. The two associated zinc ions and the
active site are entirely enclosed within the C-terminal
catalytic domain in leucine aminopeptidase. The enzyme
is a hexamer, with the catalytic domains clustered
around the three-fold axis, and the two trimers related
to one another by a two-fold rotation. The N-terminal
domain is structurally similar to the ADP-ribose binding
Macro domain. This family includes proteins from
bacteria, archaea, animals and plants.
Length = 468
Score = 534 bits (1378), Expect = 0.0
Identities = 206/486 (42%), Positives = 297/486 (61%), Gaps = 26/486 (5%)
Query: 476 TDCLVVGIFKKN-KLSSIVKDIDKY--GEITNILKSGDLNEKLGSTLLLRNIQKINAKRI 532
D LV+G+F+ L + +D G + +LK+ K G TLLL + AKR+
Sbjct: 1 ADGLVLGVFEGEGGLPPAAEKLDAASSGALAALLKASGFKGKAGETLLLPALGG-GAKRV 59
Query: 533 LLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIII 592
LV LG K++ + N K + +G+ ++ ++ L+
Sbjct: 60 ALVGLG-KEEDLDVENLRKAAGAAARALKKLGSKSVA-------VDLPTLAEDAEAAAEG 111
Query: 593 ISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNL 652
YR D KSKKK + L+ N + A+ G AI++G+ L ++L N
Sbjct: 112 ALLGAYRFDRYKSKKKKTPLL-----VVLELGNDKAAEAALERGEAIAEGVNLARDLVNT 166
Query: 653 SANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM 712
AN TPTYL +K+L+ + + +E+++ ++++ L MG+LL+V GS EPP+LI+++Y
Sbjct: 167 PANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYK 226
Query: 713 NGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNI 772
+ PI LVGKG+TFDTGG+S+KP+ MD MKYDM GAA++LG + AI+E+ L +N+
Sbjct: 227 GKGASKKPIALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKLPVNV 286
Query: 773 IGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVID 832
+GV+ +ENM+SGN+ +PGD++ S SGKT+E+L+TDAEGRL+L DALTY + FKP ++ID
Sbjct: 287 VGVLPLAENMISGNAYRPGDVITSRSGKTVEILNTDAEGRLVLADALTYAQEFKPDLIID 346
Query: 833 IATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKS 892
IATLTGA VVALGH +GLF+ +DE L LL AG+ SG+ W +P+ + Y++QLKS
Sbjct: 347 IATLTGAAVVALGHDYAGLFTNDDE----LAKQLLAAGEASGERVWRLPLWEEYREQLKS 402
Query: 893 NFADISNIGNS-SADSITAACFLENFTKKYV-WAHLDIAGVAWKSGDK---KGATGRPVT 947
+ AD+ NIG A SITAA FL+ F + WAHLDIAG AWKS KGATG V
Sbjct: 403 DIADLKNIGGRGPAGSITAALFLKEFVGDGIPWAHLDIAGTAWKSKPGYLPKGATGFGVR 462
Query: 948 LLTYYL 953
LL +L
Sbjct: 463 LLVEFL 468
Score = 507 bits (1308), Expect = e-171
Identities = 199/467 (42%), Positives = 281/467 (60%), Gaps = 36/467 (7%)
Query: 5 TDCLVVGIFKKN-KLSSIVKDIDKY--GEITNILKSGDLNEKLGSTLLLRNIQKINAKRI 61
D LV+G+F+ L + +D G + +LK+ K G TLLL + AKR+
Sbjct: 1 ADGLVLGVFEGEGGLPPAAEKLDAASSGALAALLKASGFKGKAGETLLLPALGG-GAKRV 59
Query: 62 LLVNLG-------------ASNLLLMLPFNK-----IEKYNLSCLIIRTIIIISDNLYRS 103
LV LG A L ++ L+ YR
Sbjct: 60 ALVGLGKEEDLDVENLRKAAGAAARALKKLGSKSVAVDLPTLAEDAEAAAEGALLGAYRF 119
Query: 104 DAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLSANICTPT 163
D KSKKK + L+ N + A+ G AI++G+ L ++L N AN TPT
Sbjct: 120 DRYKSKKKKTPLL-----VVLELGNDKAAEAALERGEAIAEGVNLARDLVNTPANDLTPT 174
Query: 164 YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAP 223
YL +K+L+ + + +E+++ ++++ L MG+LL+V GS EPP+LI+++Y + P
Sbjct: 175 YLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGASKKP 234
Query: 224 IVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASE 283
I LVGKG+TFDTGG+S+KP+ MD MKYDM GAA++LG + AI+E+ L +N++GV+ +E
Sbjct: 235 IALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKLPVNVVGVLPLAE 294
Query: 284 NMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGAC 343
NM+SGN+ +PGD++ S SGKT+E+L+TDAEGRL+L DALTY + FKP ++IDIATLTGA
Sbjct: 295 NMISGNAYRPGDVITSRSGKTVEILNTDAEGRLVLADALTYAQEFKPDLIIDIATLTGAA 354
Query: 344 VVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNI 403
VVALGH +GLF+ +DE L LL AG+ SG+ W +P+ + Y++QLKS+ AD+ NI
Sbjct: 355 VVALGHDYAGLFTNDDE----LAKQLLAAGEASGERVWRLPLWEEYREQLKSDIADLKNI 410
Query: 404 GNS-SADSITAACFLENFTKKYV-WAHLDIAGVAWKSGDK---KGAT 445
G A SITAA FL+ F + WAHLDIAG AWKS KGAT
Sbjct: 411 GGRGPAGSITAALFLKEFVGDGIPWAHLDIAGTAWKSKPGYLPKGAT 457
>gnl|CDD|223338 COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and
metabolism].
Length = 485
Score = 515 bits (1329), Expect = e-174
Identities = 209/502 (41%), Positives = 301/502 (59%), Gaps = 26/502 (5%)
Query: 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGDLNEKLGS 517
M+F +K S + +VVG+F + +I D G ++ +LK+G+ + K G
Sbjct: 1 MEFSVKSGLSAK-----LSVTIVVGLFAELAAEAIALDEKSEGILSWLLKAGEFSGKAGQ 55
Query: 518 TLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKI 577
LLL + KR+LLV LG K+K+ E + + A + L+LP
Sbjct: 56 VLLLPG-SVGSVKRVLLVGLG--KRKLSEDTLRRAAGAAARALKKGKAWEVTLLLPELPA 112
Query: 578 EKYNLSCLIIRTIII-ISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYG 636
I + YR D KS+KK + K+ + K + AI G
Sbjct: 113 A------EIAAAAVEGFLLGSYRFDRYKSEKKEPDKELPKVTLLVPAK---SAEKAIREG 163
Query: 637 CAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSV 696
AI++G+ L ++L N ANI TP L ++ L+ + +E+++ + +++L MG+LL+V
Sbjct: 164 EAIAEGVNLARDLVNTPANILTPEELAERAELLAKLGGVKVEVLDEKDLEKLGMGALLAV 223
Query: 697 THGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASI 756
GS+ PP+LI+++Y + PI LVGKG+TFD+GGISIKP+ MD MKYDM GAA++
Sbjct: 224 GKGSARPPRLIVLEYNGKGKAKKPIALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAV 283
Query: 757 LGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILC 816
LG + A++E+ L +N++GV+ A ENM SGN+ +PGD++ SM+GKT+EVL+TDAEGRL+L
Sbjct: 284 LGAMRALAELKLPVNVVGVLPAVENMPSGNAYRPGDVITSMNGKTVEVLNTDAEGRLVLA 343
Query: 817 DALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDT 876
DALTY E KP ++ID+ATLTGA VVALG+ +GLFS +DE L LL A + +G+
Sbjct: 344 DALTYAEELKPDLIIDVATLTGAAVVALGNDYTGLFSNDDE----LANQLLAASEETGEP 399
Query: 877 AWNMPIEDRYQKQLKSNFADISNIGNSS-ADSITAACFLENFTKKYVWAHLDIAGVAWKS 935
W +P+ + Y+KQLKSNFAD++NIG +ITAA FL F + WAHLDIAG AWKS
Sbjct: 400 LWRLPLHEEYRKQLKSNFADLANIGGGRFGGAITAALFLSEFVENVPWAHLDIAGTAWKS 459
Query: 936 GD---KKGATGRPVTLLTYYLM 954
G KGATG V L +L+
Sbjct: 460 GSPYWPKGATGVGVRTLAQFLL 481
Score = 492 bits (1269), Expect = e-165
Identities = 197/465 (42%), Positives = 283/465 (60%), Gaps = 31/465 (6%)
Query: 4 KTDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILL 63
+ +VVG+F + +I D G ++ +LK+G+ + K G LLL + KR+LL
Sbjct: 13 LSVTIVVGLFAELAAEAIALDEKSEGILSWLLKAGEFSGKAGQVLLLPG-SVGSVKRVLL 71
Query: 64 VNLGASNLLLMLP----------FNKIEKYNLSCL--------IIRTIII-ISDNLYRSD 104
V LG L K + + ++ L I + YR D
Sbjct: 72 VGLGKRKLSEDTLRRAAGAAARALKKGKAWEVTLLLPELPAAEIAAAAVEGFLLGSYRFD 131
Query: 105 AQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLSANICTPTY 164
KS+KK + K+ + K + AI G AI++G+ L ++L N ANI TP
Sbjct: 132 RYKSEKKEPDKELPKVTLLVPAK---SAEKAIREGEAIAEGVNLARDLVNTPANILTPEE 188
Query: 165 LENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPI 224
L ++ L+ + +E+++ + +++L MG+LL+V GS+ PP+LI+++Y + PI
Sbjct: 189 LAERAELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGKAKKPI 248
Query: 225 VLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASEN 284
LVGKG+TFD+GGISIKP+ MD MKYDM GAA++LG + A++E+ L +N++GV+ A EN
Sbjct: 249 ALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELKLPVNVVGVLPAVEN 308
Query: 285 MLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACV 344
M SGN+ +PGD++ SM+GKT+EVL+TDAEGRL+L DALTY E KP ++ID+ATLTGA V
Sbjct: 309 MPSGNAYRPGDVITSMNGKTVEVLNTDAEGRLVLADALTYAEELKPDLIIDVATLTGAAV 368
Query: 345 VALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIG 404
VALG+ +GLFS +DE L LL A + +G+ W +P+ + Y+KQLKSNFAD++NIG
Sbjct: 369 VALGNDYTGLFSNDDE----LANQLLAASEETGEPLWRLPLHEEYRKQLKSNFADLANIG 424
Query: 405 NSS-ADSITAACFLENFTKKYVWAHLDIAGVAWKSGD---KKGAT 445
+ITAA FL F + WAHLDIAG AWKSG KGAT
Sbjct: 425 GGRFGGAITAALFLSEFVENVPWAHLDIAGTAWKSGSPYWPKGAT 469
>gnl|CDD|216171 pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic
domain. The two associated zinc ions and the active
site are entirely enclosed within the C-terminal
catalytic domain in leucine aminopeptidase.
Length = 311
Score = 395 bits (1017), Expect = e-130
Identities = 154/314 (49%), Positives = 216/314 (68%), Gaps = 10/314 (3%)
Query: 643 IELTKNLGNLSANICTPTYLENISKKLSFDY-KMDIEIINREQMQRLKMGSLLSVTHGSS 701
+ L ++L N ANI TP L ++KL+ +Y + IE+++ E+++ L MG LL+V GS
Sbjct: 1 VNLARDLVNTPANILTPAVLAEEAEKLASNYSDVKIEVLDEEELEELGMGGLLAVNKGSE 60
Query: 702 EPPKLIIIKYMNGKFKEA-PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTL 760
PP+ I++ Y K ++ + LVGKG+TFD+GGISIKP MD MKYDM GAA++LG +
Sbjct: 61 NPPRFIVLSYKGNKSEDKKKLALVGKGITFDSGGISIKPGAGMDLMKYDMGGAAAVLGAI 120
Query: 761 YAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALT 820
A++++ +N++ V+ +ENM+SG + +PGDI+ +M+GKT+EV +TDAEGRL+L DALT
Sbjct: 121 KALAQLKPPVNVVAVLALTENMISGTAMRPGDIITAMNGKTVEVNNTDAEGRLVLADALT 180
Query: 821 YVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNM 880
Y P V+ID+ATLTGACVVALG +G+FS +DE L +L++A + SG+ W M
Sbjct: 181 YACELNPEVIIDVATLTGACVVALGTTYTGIFSNDDE----LANELIKAAEESGEKVWRM 236
Query: 881 PIEDRYQKQLKSNFADISNIGNSS-ADSITAACFLENFTKKYV-WAHLDIAGVAW--KSG 936
P+ + Y+KQLKS AD++NIG A +ITAA FL+ F + V WAHLDIAG AW K G
Sbjct: 237 PLHEDYKKQLKSKIADLANIGGRRGAGAITAALFLKEFVEDGVPWAHLDIAGTAWNKKKG 296
Query: 937 DKKGATGRPVTLLT 950
KGATG V L
Sbjct: 297 QPKGATGYGVRTLV 310
Score = 384 bits (989), Expect = e-126
Identities = 151/306 (49%), Positives = 213/306 (69%), Gaps = 10/306 (3%)
Query: 146 IELTKNLGNLSANICTPTYLENISKKLSFDY-KMDIEIINREQMQRLKMGSLLSVTHGSS 204
+ L ++L N ANI TP L ++KL+ +Y + IE+++ E+++ L MG LL+V GS
Sbjct: 1 VNLARDLVNTPANILTPAVLAEEAEKLASNYSDVKIEVLDEEELEELGMGGLLAVNKGSE 60
Query: 205 EPPKLIIIKYMNGKFKEA-PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTL 263
PP+ I++ Y K ++ + LVGKG+TFD+GGISIKP MD MKYDM GAA++LG +
Sbjct: 61 NPPRFIVLSYKGNKSEDKKKLALVGKGITFDSGGISIKPGAGMDLMKYDMGGAAAVLGAI 120
Query: 264 YAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALT 323
A++++ +N++ V+ +ENM+SG + +PGDI+ +M+GKT+EV +TDAEGRL+L DALT
Sbjct: 121 KALAQLKPPVNVVAVLALTENMISGTAMRPGDIITAMNGKTVEVNNTDAEGRLVLADALT 180
Query: 324 YVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNM 383
Y P V+ID+ATLTGACVVALG +G+FS +DE L +L++A + SG+ W M
Sbjct: 181 YACELNPEVIIDVATLTGACVVALGTTYTGIFSNDDE----LANELIKAAEESGEKVWRM 236
Query: 384 PIEDRYQKQLKSNFADISNIGNSS-ADSITAACFLENFTKKYV-WAHLDIAGVAW--KSG 439
P+ + Y+KQLKS AD++NIG A +ITAA FL+ F + V WAHLDIAG AW K G
Sbjct: 237 PLHEDYKKQLKSKIADLANIGGRRGAGAITAALFLKEFVEDGVPWAHLDIAGTAWNKKKG 296
Query: 440 DKKGAT 445
KGAT
Sbjct: 297 QPKGAT 302
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 251 bits (643), Expect = 4e-73
Identities = 140/343 (40%), Positives = 193/343 (56%), Gaps = 19/343 (5%)
Query: 630 KNAIIYGCAISKGIELTKNLGNLSANICTPT-YLENISKKLSFDYKMDIEIINREQMQRL 688
AI G I + +NLGNL + P Y E I K+L+ +++ EQ++
Sbjct: 202 AQAIAAGNIIGHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGA 261
Query: 689 KMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKY 748
+ + +V GS P L++ +Y+ A LVGKGVTFD GG++IKP SM+ M
Sbjct: 262 GLNLMYNVGKGSRHEPYLVVFEYIGNPRSSAATALVGKGVTFDCGGLNIKPYGSMETMHS 321
Query: 749 DMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTD 808
DM GAA+++ TL AI+++ L +N++ + +EN + S P I+ S G T+EVL+TD
Sbjct: 322 DMMGAATVMCTLKAIAKLQLPVNVVAAVGLAENAIGPESYHPSSIITSRKGLTVEVLNTD 381
Query: 809 AEGRLILCDALTYVERF-----KPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLV 863
AEGRL+L D LTYV++ KP+ +IDIATLTGA +V LG +GLFS ND L
Sbjct: 382 AEGRLVLADTLTYVQKDAKLDKKPTTIIDIATLTGAIIVGLGSRRAGLFS-ND---AHLA 437
Query: 864 LDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGN-SSADSITAACFLENFTKKYV 922
L+ +G+ SG+ W MPI D ++ +K AD+ N+ + A S TAA FL NF + V
Sbjct: 438 QSLMASGRSSGEELWPMPIGDEHKDAMKGGIADLINVASGREAGSCTAAAFLSNFVEPEV 497
Query: 923 -WAHLDIAGVAWKSGDK------KGATGRPVTLLTYYLMLKSP 958
WAHLDIAGV GDK GA G V LL Y P
Sbjct: 498 KWAHLDIAGVG-MGGDKPKGFQPAGAPGFGVQLLVDYFRHNKP 539
Score = 245 bits (626), Expect = 9e-71
Identities = 150/417 (35%), Positives = 219/417 (52%), Gaps = 23/417 (5%)
Query: 43 KLGSTLLLRNIQKINAKRILLVNLGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYR 102
+L T +R +K+NA ++L +L + F + ++ +T I Y+
Sbjct: 102 RLAVTAAVREAKKLNASALVLHSLPQDVFSMGDLFQPPSRLPSHDVVEKTAIFAVTAAYQ 161
Query: 103 SDAQKSKKK----PIKINIKKIIFALDEKN----YID--GKNAIIYGCAISKGIELTKNL 152
D KS K + + + ID AI G I + +NL
Sbjct: 162 YDRLKSGAKGGLTRARRAESRAKPPAAPQPPMELVIDSSNAQAIAAGNIIGHCVNEARNL 221
Query: 153 GNLSANICTPT-YLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLII 211
GNL + P Y E I K+L+ +++ EQ++ + + +V GS P L++
Sbjct: 222 GNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVV 281
Query: 212 IKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNL 271
+Y+ A LVGKGVTFD GG++IKP SM+ M DM GAA+++ TL AI+++ L
Sbjct: 282 FEYIGNPRSSAATALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQL 341
Query: 272 ELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERF--- 328
+N++ + +EN + S P I+ S G T+EVL+TDAEGRL+L D LTYV++
Sbjct: 342 PVNVVAAVGLAENAIGPESYHPSSIITSRKGLTVEVLNTDAEGRLVLADTLTYVQKDAKL 401
Query: 329 --KPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIE 386
KP+ +IDIATLTGA +V LG +GLFS ND L L+ +G+ SG+ W MPI
Sbjct: 402 DKKPTTIIDIATLTGAIIVGLGSRRAGLFS-ND---AHLAQSLMASGRSSGEELWPMPIG 457
Query: 387 DRYQKQLKSNFADISNIGN-SSADSITAACFLENFTKKYV-WAHLDIAGVAWKSGDK 441
D ++ +K AD+ N+ + A S TAA FL NF + V WAHLDIAGV GDK
Sbjct: 458 DEHKDAMKGGIADLINVASGREAGSCTAAAFLSNFVEPEVKWAHLDIAGVG-MGGDK 513
>gnl|CDD|235330 PRK05015, PRK05015, aminopeptidase B; Provisional.
Length = 424
Score = 212 bits (542), Expect = 1e-60
Identities = 113/277 (40%), Positives = 160/277 (57%), Gaps = 17/277 (6%)
Query: 678 EIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPIV--LVGKGVTFDTGGI 735
II E ++ + +V GS PP L+ + Y +AP+ LVGKG+TFD+GG
Sbjct: 141 RIIKGEDLREQGYMGIHTVGRGSERPPVLLALDYNPTGDPDAPVYACLVGKGITFDSGGY 200
Query: 736 SIKPSYSMDEMKYDMCGAASILGTL-YAISE-MNLELNIIGVIVASENMLSGNSTKPGDI 793
SIKPS MD MK DM GAA++ G L AI+ +N + + + +EN++SGN+ K GDI
Sbjct: 201 SIKPSAGMDSMKSDMGGAATVTGALALAITRGLNKRVKLF--LCCAENLISGNAFKLGDI 258
Query: 794 VVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFS 853
+ +GKT+EV++TDAEGRL+L D L P ++ID ATLTGA ALG+ LFS
Sbjct: 259 ITYRNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAKTALGNDYHALFS 318
Query: 854 RNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGNS--SADSITAA 911
+DE L LL + + W +P+ + ++ QL SNFAD++N G+ A + TAA
Sbjct: 319 FDDE----LAQRLLASAAQENEPFWRLPLAEFHRSQLPSNFADLANSGSGAGPAGASTAA 374
Query: 912 CFLENFTKKYV--WAHLDIAGVAWKSGDKK---GATG 943
FL +F + Y W H+D + KS + GATG
Sbjct: 375 GFLSHFVENYQQGWLHIDCSATYRKSAVDQWAAGATG 411
Score = 210 bits (536), Expect = 1e-59
Identities = 112/276 (40%), Positives = 159/276 (57%), Gaps = 17/276 (6%)
Query: 181 EIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPIV--LVGKGVTFDTGGI 238
II E ++ + +V GS PP L+ + Y +AP+ LVGKG+TFD+GG
Sbjct: 141 RIIKGEDLREQGYMGIHTVGRGSERPPVLLALDYNPTGDPDAPVYACLVGKGITFDSGGY 200
Query: 239 SIKPSYSMDEMKYDMCGAASILGTL-YAISE-MNLELNIIGVIVASENMLSGNSTKPGDI 296
SIKPS MD MK DM GAA++ G L AI+ +N + + + +EN++SGN+ K GDI
Sbjct: 201 SIKPSAGMDSMKSDMGGAATVTGALALAITRGLNKRVKLF--LCCAENLISGNAFKLGDI 258
Query: 297 VVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFS 356
+ +GKT+EV++TDAEGRL+L D L P ++ID ATLTGA ALG+ LFS
Sbjct: 259 ITYRNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAKTALGNDYHALFS 318
Query: 357 RNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGNS--SADSITAA 414
+DE L LL + + W +P+ + ++ QL SNFAD++N G+ A + TAA
Sbjct: 319 FDDE----LAQRLLASAAQENEPFWRLPLAEFHRSQLPSNFADLANSGSGAGPAGASTAA 374
Query: 415 CFLENFTKKYV--WAHLDIAGVAWKSGDKK---GAT 445
FL +F + Y W H+D + KS + GAT
Sbjct: 375 GFLSHFVENYQQGWLHIDCSATYRKSAVDQWAAGAT 410
>gnl|CDD|217232 pfam02789, Peptidase_M17_N, Cytosol aminopeptidase family,
N-terminal domain.
Length = 126
Score = 65.9 bits (161), Expect = 8e-13
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 480 VVGIFKKNKLSSIVKDIDKY--GEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNL 537
VVG+F+ KLS + +D+ G ++ +LK GD + K G TLLL ++ + AKR+LLV L
Sbjct: 1 VVGVFEDGKLSPAAEKLDEALDGLLSALLKEGDFSGKAGETLLLPSLPGVKAKRVLLVGL 60
Query: 538 GDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIII-ISDN 596
G K++++ K + + + + LP I+ + R
Sbjct: 61 G-KEEELSAEALRKAAGAAARALKGLKVKTVAVDLPTLNIDAAE----VARAAAEGALLG 115
Query: 597 LYRSDAQKSKK 607
YR D KSKK
Sbjct: 116 AYRFDRYKSKK 126
Score = 53.2 bits (128), Expect = 2e-08
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 9 VVGIFKKNKLSSIVKDIDKY--GEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNL 66
VVG+F+ KLS + +D+ G ++ +LK GD + K G TLLL ++ + AKR+LLV L
Sbjct: 1 VVGVFEDGKLSPAAEKLDEALDGLLSALLKEGDFSGKAGETLLLPSLPGVKAKRVLLVGL 60
Query: 67 GASNLL 72
G L
Sbjct: 61 GKEEEL 66
>gnl|CDD|151771 pfam11330, DUF3132, Protein of unknown function (DUF3132). This
viral family of proteins are 55kDa. No function is
currently known.
Length = 124
Score = 32.3 bits (73), Expect = 0.36
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 248 EMKYDMCGAASILGTLYAISEMNLELNIIG-VIVASENMLSGNSTKPGDIVVSMSGKTIE 306
++ ++ G +L ++ S+ +L NI+ ++ E + G T D+++ G+ +
Sbjct: 32 KLSFETFGNKFLLKDVFMFSDQSLGDNILSYTLLKEEGHIDGMRTAGDDVLLEKDGEVVM 91
Query: 307 VLDTDAEGRLILCD 320
+LD+ EGR+ + D
Sbjct: 92 ILDSRDEGRMWIKD 105
Score = 32.3 bits (73), Expect = 0.36
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 745 EMKYDMCGAASILGTLYAISEMNLELNIIG-VIVASENMLSGNSTKPGDIVVSMSGKTIE 803
++ ++ G +L ++ S+ +L NI+ ++ E + G T D+++ G+ +
Sbjct: 32 KLSFETFGNKFLLKDVFMFSDQSLGDNILSYTLLKEEGHIDGMRTAGDDVLLEKDGEVVM 91
Query: 804 VLDTDAEGRLILCD 817
+LD+ EGR+ + D
Sbjct: 92 ILDSRDEGRMWIKD 105
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 33.4 bits (77), Expect = 0.71
Identities = 50/232 (21%), Positives = 84/232 (36%), Gaps = 42/232 (18%)
Query: 452 KKEKIIMDF-DIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGD 510
+ +I DF I L+ S S + + D G+ ++ +I EI +S
Sbjct: 856 RTNGLIRDFLRINLVKSPISYIRKRNDPSSSGLLVQSNNFLDSTNIYSKAEI----QSQS 911
Query: 511 LNEKLGS--TLLLRN--------IQKINAKRI-LLVNLGDKKKKIKESNFIKIIQSIMNV 559
L++ G+ TLL RN + + RI K IKESN + I++
Sbjct: 912 LSQNQGTIRTLLNRNKESQSLLILSSSDCFRIGPFNGKKSKYHNIKESNPLIPIRNS--- 968
Query: 560 FCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKI-NIKKII 618
L + +I ++ S ++ + Q K +++ N+K+
Sbjct: 969 --------LGPLGTVLQIANFSSSYHLL------------THNQILVTKYLQLDNLKQTF 1008
Query: 619 FALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLSANICTPTYLENISKKLS 670
K Y+ +N IY I L N NL+ Y E S +S
Sbjct: 1009 QVKVLKYYLIDENGKIYNPDPCSNIIL--NPFNLNWYFLHHNYCEETSTIIS 1058
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 31.1 bits (71), Expect = 2.8
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 81 EKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGC 140
E NL SD L D ++ K K K + L EK Y+ +NAII+
Sbjct: 193 ECRNLPGFATTFDFQPSDELSYDDFRRVLYKWHKKLTKALFSCLSEKEYMSIRNAIIFLK 252
Query: 141 AISKGIELTKNLGNLSANICTPTYLENISKK 171
+S + + G I LE I K+
Sbjct: 253 KVSDVFPVVDDHGE---KIL--KQLEKILKR 278
Score = 31.1 bits (71), Expect = 2.8
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 578 EKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGC 637
E NL SD L D ++ K K K + L EK Y+ +NAII+
Sbjct: 193 ECRNLPGFATTFDFQPSDELSYDDFRRVLYKWHKKLTKALFSCLSEKEYMSIRNAIIFLK 252
Query: 638 AISKGIELTKNLGNLSANICTPTYLENISKK 668
+S + + G I LE I K+
Sbjct: 253 KVSDVFPVVDDHGE---KIL--KQLEKILKR 278
>gnl|CDD|236261 PRK08412, flgL, flagellar hook-associated protein FlgL; Validated.
Length = 827
Score = 30.6 bits (69), Expect = 5.6
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 28/163 (17%)
Query: 93 IIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNL 152
+ I ++ R + SK+ PI + + + +D K + G + E K
Sbjct: 450 VEIETNGRLRIIDKSSKESPISLAL----------SALDQKGLEVAGIPTNNASEYQK-- 497
Query: 153 GNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII 212
TY KL ++ I + + + LS G S ++ +
Sbjct: 498 ----------TYFNKEGSKLE----SNVSQIIKNGNEYATGSTKLSEVAGGSLDGQVFNM 543
Query: 213 KYM--NGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDM 253
K NG F EA I L G P Y + +
Sbjct: 544 KLNDVNGSFLEAQINLSNAGSFLSLPNGIKIPLYDPHDTPAAV 586
Score = 30.6 bits (69), Expect = 5.6
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 28/163 (17%)
Query: 590 IIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNL 649
+ I ++ R + SK+ PI + + + +D K + G + E K
Sbjct: 450 VEIETNGRLRIIDKSSKESPISLAL----------SALDQKGLEVAGIPTNNASEYQK-- 497
Query: 650 GNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII 709
TY KL ++ I + + + LS G S ++ +
Sbjct: 498 ----------TYFNKEGSKLE----SNVSQIIKNGNEYATGSTKLSEVAGGSLDGQVFNM 543
Query: 710 KYM--NGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDM 750
K NG F EA I L G P Y + +
Sbjct: 544 KLNDVNGSFLEAQINLSNAGSFLSLPNGIKIPLYDPHDTPAAV 586
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 30.1 bits (68), Expect = 7.0
Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 14/148 (9%)
Query: 486 KNKLSSIVKDIDKYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRIL-LVNLGDKKKKI 544
++K ++ +++ EI + + + L L Q+IN IL L+ + K
Sbjct: 772 QSKYLDLIDNLNDAREIKDKESKAIDLDDIDFELELIGKQEINIDYILELLQTFNDKNGA 831
Query: 545 KESNFIKIIQ-----SIMNVFCNIGASNLLLMLPFNKIEKYN---LSCLIIRTIIIISDN 596
ES ++I+ I ++ L I +Y L + I
Sbjct: 832 YESL-KELIERIIKEWIEDLRQKKKLIERL----IEAINQYRAKKLDTAEKLEELYILAK 886
Query: 597 LYRSDAQKSKKKPIKINIKKIIFALDEK 624
Q ++++ + L
Sbjct: 887 KEEEFKQFAEEEGLNEEELAFYDDLALN 914
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.381
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,395,866
Number of extensions: 4932822
Number of successful extensions: 4469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4391
Number of HSP's successfully gapped: 71
Length of query: 963
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 857
Effective length of database: 6,236,078
Effective search space: 5344318846
Effective search space used: 5344318846
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.6 bits)