RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3774
(963 letters)
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
{Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Length = 503
Score = 622 bits (1606), Expect = 0.0
Identities = 219/506 (43%), Positives = 331/506 (65%), Gaps = 15/506 (2%)
Query: 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKL 515
M+F +K + S ++ C+VVG+F+ +LS I + +DK G I+ +L+ G+L K
Sbjct: 1 MEFSVK----SGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKP 56
Query: 516 GSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFN 575
G TLLL ++ + ++RILL+ G K++++ E + ++IQ +N + G+ + L
Sbjct: 57 GQTLLLHHVPNVLSERILLIGCG-KERELDERQYKQVIQKTINTLNDTGSMEAVCFLTEL 115
Query: 576 KIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYI-DGKNAII 634
++ N + + + + LY D K+ K + ++K++F + + + G+ AI
Sbjct: 116 HVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQ 175
Query: 635 YGCAISKGIELTKNLGNLSANICTPTYLENISKKLS--FDYKMDIEIINREQMQRLKMGS 692
+G AI+ GI+ K+LGN+ NIC YL + +++L+ + + +I +QM+ L M S
Sbjct: 176 HGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHS 235
Query: 693 LLSVTHGSSEPPKLIIIKYMNGKFKEA-PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMC 751
L+V GS + +I+Y ++A PIVLVGKG+TFD+GGISIKPS MDEMKYDMC
Sbjct: 236 YLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMC 295
Query: 752 GAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEG 811
GAA++ G + ++E+ L +N+IGV+ ENM G + +PGD++ +MSG+T+EVL+TDAEG
Sbjct: 296 GAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEG 355
Query: 812 RLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGK 871
RL+LCD LTYVERF+P VID+ATLTGACV+ALGHH +GL + ++ L +L+ A +
Sbjct: 356 RLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNP----LAHELIAASE 411
Query: 872 MSGDTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGV 931
SGD AW +P+ D YQ+QL+SNFAD++NIG +ITA CFL FT+KY WAHLDIAG
Sbjct: 412 QSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGT 471
Query: 932 AWKSGDKKGATGRPVTLLTYYLMLKS 957
AW+SG KGATGRPV LL +L+ ++
Sbjct: 472 AWRSGKAKGATGRPVALLAQFLLNRA 497
Score = 576 bits (1486), Expect = 0.0
Identities = 202/475 (42%), Positives = 298/475 (62%), Gaps = 35/475 (7%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKLGSTLLLRNIQKINAK 59
++ C+VVG+F+ +LS I + +DK G I+ +L+ G+L K G TLLL ++ + ++
Sbjct: 12 KQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSE 71
Query: 60 RILLVNLG-------------------------ASNLLLMLPFNKIEKYNLSCLIIRTII 94
RILL+ G + + L ++ N + + +
Sbjct: 72 RILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVE 131
Query: 95 IISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYI-DGKNAIIYGCAISKGIELTKNLG 153
+ LY D K+ K + ++K++F + + + G+ AI +G AI+ GI+ K+LG
Sbjct: 132 TAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLG 191
Query: 154 NLSANICTPTYLENISKKLS--FDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLII 211
N+ NIC YL + +++L+ + + +I +QM+ L M S L+V GS + +
Sbjct: 192 NMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSV 251
Query: 212 IKYMNGKFKEA-PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMN 270
I+Y ++A PIVLVGKG+TFD+GGISIKPS MDEMKYDMCGAA++ G + ++E+
Sbjct: 252 IEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQ 311
Query: 271 LELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKP 330
L +N+IGV+ ENM G + +PGD++ +MSG+T+EVL+TDAEGRL+LCD LTYVERF+P
Sbjct: 312 LPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEP 371
Query: 331 SVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQ 390
VID+ATLTGACV+ALGHH +GL + ++ L +L+ A + SGD AW +P+ D YQ
Sbjct: 372 EAVIDVATLTGACVIALGHHITGLMANHNP----LAHELIAASEQSGDRAWRLPLGDEYQ 427
Query: 391 KQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKSGDKKGAT 445
+QL+SNFAD++NIG +ITA CFL FT+KY WAHLDIAG AW+SG KGAT
Sbjct: 428 EQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGAT 482
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding,
proteas; HET: BES; 1.50A {Pseudomonas putida} PDB:
3h8e_A 3h8f_A*
Length = 497
Score = 619 bits (1599), Expect = 0.0
Identities = 228/505 (45%), Positives = 327/505 (64%), Gaps = 15/505 (2%)
Query: 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKL 515
M+ +K + + S+KT LV+ + + KL ++ K +D G I+ +LK GDL K
Sbjct: 1 MELVVK----SVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKP 56
Query: 516 GSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFN 575
G TLLL+N+Q + A+R+LLV G K + + + + K++ S+ V + ++ +L L
Sbjct: 57 GQTLLLQNLQGLKAERVLLVGSG-KDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDV 115
Query: 576 KIEKYNLSCLIIRTIII-ISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAII 634
+ + R + + D Y D KS+K +KK+ D+ + + A+
Sbjct: 116 AVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVE-PRALKKVTLLADKAGQAEVERAVK 174
Query: 635 YGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYK-MDIEIINREQMQRLKMGSL 693
+ AI+ G+ T++LGNL N+C P++L +K+L +K + +E+++ ++++ L MG+
Sbjct: 175 HASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAF 234
Query: 694 LSVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGA 753
+V GS +PP+LI++ Y GK + P VLVGKG+TFDTGGIS+KP MDEMKYDMCGA
Sbjct: 235 YAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGA 294
Query: 754 ASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRL 813
AS+ GTL A+ E+ L +N++ ++ +ENM SG +T+PGDIV +MSG+T+E+L+TDAEGRL
Sbjct: 295 ASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRL 354
Query: 814 ILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMS 873
+LCD LTY ERFKP VIDIATLTGAC+VALG H +GL ND+ LV LL AGK +
Sbjct: 355 VLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDD----LVGQLLDAGKRA 410
Query: 874 GDTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAW 933
D AW +P+ D YQ+QL S FAD+ NIG A +ITA CFL F K Y WAH+DIAG AW
Sbjct: 411 DDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAW 470
Query: 934 KSGDK-KGATGRPVTLLTYYLMLKS 957
SG K KGATGRPV LLT YL+ ++
Sbjct: 471 ISGGKDKGATGRPVPLLTQYLLDRA 495
Score = 576 bits (1488), Expect = 0.0
Identities = 213/474 (44%), Positives = 297/474 (62%), Gaps = 35/474 (7%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKLGSTLLLRNIQKINAK 59
S+KT LV+ + + KL ++ K +D G I+ +LK GDL K G TLLL+N+Q + A+
Sbjct: 12 SVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAE 71
Query: 60 RILLVNLG-------------------------ASNLLLMLPFNKIEKYNLSCLIIRTII 94
R+LLV G ++ +L L + + R +
Sbjct: 72 RVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLA 131
Query: 95 I-ISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLG 153
+ D Y D KS+K +KK+ D+ + + A+ + AI+ G+ T++LG
Sbjct: 132 ETLLDGEYVFDRFKSQKVE-PRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLG 190
Query: 154 NLSANICTPTYLENISKKLSFDYK-MDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIII 212
NL N+C P++L +K+L +K + +E+++ ++++ L MG+ +V GS +PP+LI++
Sbjct: 191 NLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVL 250
Query: 213 KYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLE 272
Y GK + P VLVGKG+TFDTGGIS+KP MDEMKYDMCGAAS+ GTL A+ E+ L
Sbjct: 251 NYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLP 310
Query: 273 LNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSV 332
+N++ ++ +ENM SG +T+PGDIV +MSG+T+E+L+TDAEGRL+LCD LTY ERFKP
Sbjct: 311 VNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQA 370
Query: 333 VIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQ 392
VIDIATLTGAC+VALG H +GL ND+ LV LL AGK + D AW +P+ D YQ+Q
Sbjct: 371 VIDIATLTGACIVALGSHTTGLMGNNDD----LVGQLLDAGKRADDRAWQLPLFDEYQEQ 426
Query: 393 LKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKSGDK-KGAT 445
L S FAD+ NIG A +ITA CFL F K Y WAH+DIAG AW SG K KGAT
Sbjct: 427 LDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGAT 480
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 617 bits (1594), Expect = 0.0
Identities = 208/503 (41%), Positives = 294/503 (58%), Gaps = 19/503 (3%)
Query: 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKL 515
+ F + + S DC+VVG F LS + +D G +T +L GD+ K
Sbjct: 3 LQFTLN----QDAPASAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKT 58
Query: 516 GSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFN 575
GST LL ++ + A R+L+V LG K + ++K I LL L
Sbjct: 59 GSTTLLHDLPGVAAPRVLVVGLG-DAGKFGVAPYLKAIGDATRALKTGAVGTALLTLTEL 117
Query: 576 KIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIY 635
++ + + I + + + YR A KKK + + + A D+ A+
Sbjct: 118 TVKARDAAWNIRQAVTVSDHAAYRYTATLGKKKVDETGLTTLAIAGDDAR------ALAV 171
Query: 636 GCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDY-KMDIEIINREQMQRLKMGSLL 694
G A ++G+E + LGNL N CTP YL + + + + + EI++ QM+ L MGSLL
Sbjct: 172 GVATAEGVEFARELGNLPPNYCTPAYLADTAAAFAGKFPGAEAEILDEAQMEALGMGSLL 231
Query: 695 SVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAA 754
SV GS+ P+LI++K+ NG P VLVGKG+TFDTGG+++K ++EMKYDMCG A
Sbjct: 232 SVARGSANRPRLIVLKW-NGGGDARPYVLVGKGITFDTGGVNLKTQGGIEEMKYDMCGGA 290
Query: 755 SILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI 814
+++GT A + L +N++ V+ A EN + GN+ +P D++ SMSGKTIEV +TDAEGRLI
Sbjct: 291 TVIGTFVATVKAELPINLVVVVPAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLI 350
Query: 815 LCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 874
LCDALTY ERF P ++D+ATLTGAC+VALGH +GL S++D+ L +LL AG+
Sbjct: 351 LCDALTYAERFNPEALVDVATLTGACMVALGHQTAGLMSKHDD----LANELLAAGEHVF 406
Query: 875 DTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWK 934
D AW +P+ D YQ L S FAD+ NIG +ITA CFL FT+ WAHLDIAGVA
Sbjct: 407 DRAWRLPLWDEYQGLLDSTFADVYNIGGRWGGAITAGCFLSRFTENQRWAHLDIAGVASD 466
Query: 935 SGDKKGATGRPVTLLTYYLMLKS 957
G + ATGRPV LLT +L+ ++
Sbjct: 467 EGKRGMATGRPVGLLTQWLLDRA 489
Score = 574 bits (1482), Expect = 0.0
Identities = 196/472 (41%), Positives = 272/472 (57%), Gaps = 39/472 (8%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKLGSTLLLRNIQKINAK 59
S DC+VVG F LS + +D G +T +L GD+ K GST LL ++ + A
Sbjct: 14 SAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAP 73
Query: 60 RILLVNLG-------------------------ASNLLLMLPFNKIEKYNLSCLIIRTII 94
R+L+V LG LL L ++ + + I + +
Sbjct: 74 RVLVVGLGDAGKFGVAPYLKAIGDATRALKTGAVGTALLTLTELTVKARDAAWNIRQAVT 133
Query: 95 IISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGN 154
+ YR A KKK + + + A D+ A+ G A ++G+E + LGN
Sbjct: 134 VSDHAAYRYTATLGKKKVDETGLTTLAIAGDDAR------ALAVGVATAEGVEFARELGN 187
Query: 155 LSANICTPTYLENISKKLSFDY-KMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIK 213
L N CTP YL + + + + + EI++ QM+ L MGSLLSV GS+ P+LI++K
Sbjct: 188 LPPNYCTPAYLADTAAAFAGKFPGAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLK 247
Query: 214 YMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLEL 273
+ NG P VLVGKG+TFDTGG+++K ++EMKYDMCG A+++GT A + L +
Sbjct: 248 W-NGGGDARPYVLVGKGITFDTGGVNLKTQGGIEEMKYDMCGGATVIGTFVATVKAELPI 306
Query: 274 NIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVV 333
N++ V+ A EN + GN+ +P D++ SMSGKTIEV +TDAEGRLILCDALTY ERF P +
Sbjct: 307 NLVVVVPAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLILCDALTYAERFNPEAL 366
Query: 334 IDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQL 393
+D+ATLTGAC+VALGH +GL S++D+ L +LL AG+ D AW +P+ D YQ L
Sbjct: 367 VDVATLTGACMVALGHQTAGLMSKHDD----LANELLAAGEHVFDRAWRLPLWDEYQGLL 422
Query: 394 KSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKSGDKKGAT 445
S FAD+ NIG +ITA CFL FT+ WAHLDIAGVA G + AT
Sbjct: 423 DSTFADVYNIGGRWGGAITAGCFLSRFTENQRWAHLDIAGVASDEGKRGMAT 474
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich;
HET: MSE; 2.70A {Francisella tularensis subsp}
Length = 486
Score = 595 bits (1536), Expect = 0.0
Identities = 176/510 (34%), Positives = 277/510 (54%), Gaps = 27/510 (5%)
Query: 457 IMDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGDLNEKLG 516
+M + S+ L + ++V KL + K +L K G
Sbjct: 1 MMKIVVNNQST------LAAELMIVAQENLQKLV----EQTKCPNSKALLDRRIFKAKSG 50
Query: 517 STLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNK 576
L L + K ++L+ LG ++ S + KII + + + + +
Sbjct: 51 EVLPLLH----GDKIVILLGLG-LRQDFIASEYDKIIAKAAEQLKKLAIKEISVDIDYA- 104
Query: 577 IEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYG 636
E N+ + T+ + Y D K++K+ + +++++ D+ D +++ G
Sbjct: 105 FENDNVKQFTLDTVRALISETYVFDQLKTEKENYSLEQIELVYSGDQ----DIEDSAKIG 160
Query: 637 CAISKGIELTKNLGNLSANICTPTYLENISKKLSFDY-KMDIEIINREQMQRLKMGSLLS 695
AI+ G K+L NL ANICT Y+ N +++L+ Y ++ ++++ M L MG L+
Sbjct: 161 SAIACGQNYAKDLQNLPANICTTDYMLNEARELTSKYATFSLDYLDQDAMAELGMGCALA 220
Query: 696 VTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAAS 755
V GS + ++Y G +APIVLVGKG+ FD GGI IK + MD MK DM G A+
Sbjct: 221 VGRGSYMSNYTVCMEYKGGNEGDAPIVLVGKGLVFDNGGICIKQAAGMDSMKMDMGGVAA 280
Query: 756 ILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLIL 815
++GT+ AI+ +NL +N++GV+ +EN + S +PGD++ SM G T+EV +TDAEGRL+L
Sbjct: 281 VMGTMKAIAMLNLPVNVVGVMGLAENAVDARSYRPGDVLKSMKGITVEVSNTDAEGRLVL 340
Query: 816 CDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGD 875
CD LTY+ ++KP VID+ATLTGA +++LG SG+F+ +D+ L L +A S D
Sbjct: 341 CDTLTYIGKYKPKAVIDLATLTGAMIISLGDAYSGMFANSDK----LANSLEQAANASND 396
Query: 876 TAWNMPIEDRYQKQLKSNFADISNIGNS-SADSITAACFLENFTKKYVWAHLDIAGVAWK 934
W +P+ Y K+++S AD+ N G SA SI AA FL FT+ Y WAHLDIAG A
Sbjct: 397 LIWRLPLHKPYLKKIESKVADMDNCGRDRSAGSIVAALFLSKFTEDYEWAHLDIAGSAMG 456
Query: 935 SGDKKGATGRPVTLLTYYLMLKS-PNINFK 963
A+GRPV LL +YL+ ++ N+ F+
Sbjct: 457 DFASCKASGRPVPLLVHYLISQAKENLYFQ 486
Score = 553 bits (1426), Expect = 0.0
Identities = 161/488 (32%), Positives = 255/488 (52%), Gaps = 51/488 (10%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRI 61
+L + ++V KL + K +L K G L L + K +
Sbjct: 11 TLAAELMIVAQENLQKLV----EQTKCPNSKALLDRRIFKAKSGEVLPLLH----GDKIV 62
Query: 62 LLVNLG-------------------------ASNLLLMLPFNKIEKYNLSCLIIRTIIII 96
+L+ LG + + + + E N+ + T+ +
Sbjct: 63 ILLGLGLRQDFIASEYDKIIAKAAEQLKKLAIKEISVDIDYA-FENDNVKQFTLDTVRAL 121
Query: 97 SDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLS 156
Y D K++K+ + +++++ D+ D +++ G AI+ G K+L NL
Sbjct: 122 ISETYVFDQLKTEKENYSLEQIELVYSGDQ----DIEDSAKIGSAIACGQNYAKDLQNLP 177
Query: 157 ANICTPTYLENISKKLSFDY-KMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM 215
ANICT Y+ N +++L+ Y ++ ++++ M L MG L+V GS + ++Y
Sbjct: 178 ANICTTDYMLNEARELTSKYATFSLDYLDQDAMAELGMGCALAVGRGSYMSNYTVCMEYK 237
Query: 216 NGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNI 275
G +APIVLVGKG+ FD GGI IK + MD MK DM G A+++GT+ AI+ +NL +N+
Sbjct: 238 GGNEGDAPIVLVGKGLVFDNGGICIKQAAGMDSMKMDMGGVAAVMGTMKAIAMLNLPVNV 297
Query: 276 IGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVID 335
+GV+ +EN + S +PGD++ SM G T+EV +TDAEGRL+LCD LTY+ ++KP VID
Sbjct: 298 VGVMGLAENAVDARSYRPGDVLKSMKGITVEVSNTDAEGRLVLCDTLTYIGKYKPKAVID 357
Query: 336 IATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKS 395
+ATLTGA +++LG SG+F+ +D+ L L +A S D W +P+ Y K+++S
Sbjct: 358 LATLTGAMIISLGDAYSGMFANSDK----LANSLEQAANASNDLIWRLPLHKPYLKKIES 413
Query: 396 NFADISNIGNS-SADSITAACFLENFTKKYVWAHLDIAGVAWKSGDKKGAT-------VE 447
AD+ N G SA SI AA FL FT+ Y WAHLDIAG A A+ V
Sbjct: 414 KVADMDNCGRDRSAGSIVAALFLSKFTEDYEWAHLDIAGSAMGDFASCKASGRPVPLLVH 473
Query: 448 LYLNKKEK 455
+++ ++
Sbjct: 474 YLISQAKE 481
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease,
structural genomics; 2.70A {Staphylococcus aureus subsp}
Length = 515
Score = 595 bits (1536), Expect = 0.0
Identities = 142/504 (28%), Positives = 243/504 (48%), Gaps = 22/504 (4%)
Query: 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKL 515
M+F + + +S + + L++GI + + + + + K+
Sbjct: 25 MNFKLN------NTLSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKV 78
Query: 516 GSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFN 575
G + R++ V LG K + +KI + + + L++
Sbjct: 79 GKIYTTAFDVQDQTYRLITVGLG-NLKTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSF 137
Query: 576 KIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIY 635
+ LS +++ I Y D KS KK +I + + I
Sbjct: 138 ISKYDQLSDVLMACGIQSERATYEFDHYKSSKKAPFKTNLNLISESLIE-----LDFIHE 192
Query: 636 GCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLS 695
G +I + I L ++ N+ N+ TP + K+ +++ + + + G L +
Sbjct: 193 GISIGQSINLARDFSNMPPNVLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQA 252
Query: 696 VTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAAS 755
V GS P+L+ I Y EAPI LVGKG+T+D+GG SIK M MK+DMCGAA+
Sbjct: 253 VGKGSKHKPRLVTITYNGKDKDEAPIALVGKGITYDSGGYSIKTKNGMATMKFDMCGAAN 312
Query: 756 ILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLIL 815
++G + A S + L +NI+GV+ +ENM++ S KP D+ ++SG+T+EV++TDAEGRL+L
Sbjct: 313 VVGIIEAASRLQLPVNIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVL 372
Query: 816 CDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGD 875
DA+ Y +++PSV++D ATLTGA +VALG + F N + ++ D+L+ +
Sbjct: 373 ADAVFYANQYQPSVIMDFATLTGAAIVALGDDKAAAFESNSK---VILNDILQISSEVDE 429
Query: 876 TAWNMPIEDRYQKQLK-SNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWK 934
+ +PI + +K S+ AD+ N N ++ AA F+ +F+ + H DIAG A
Sbjct: 430 MVFELPITATERASIKHSDIADLVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGPATT 489
Query: 935 SGDK----KGATGRPVTLLTYYLM 954
+ KG TG + + +L
Sbjct: 490 NKASYNGPKGPTGFMIPTIVQWLK 513
Score = 555 bits (1431), Expect = 0.0
Identities = 135/476 (28%), Positives = 225/476 (47%), Gaps = 40/476 (8%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKLGSTLLLRNIQKINAK 59
S + + L++GI + + + + + K+G +
Sbjct: 34 SNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKVGKIYTTAFDVQDQTY 93
Query: 60 RILLVNLG-------------------------ASNLLLMLPFNKIEKYNLSCLIIRTII 94
R++ V LG + L++ + LS +++ I
Sbjct: 94 RLITVGLGNLKTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQLSDVLMACGI 153
Query: 95 IISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGN 154
Y D KS KK +I + + I G +I + I L ++ N
Sbjct: 154 QSERATYEFDHYKSSKKAPFKTNLNLISESLIE-----LDFIHEGISIGQSINLARDFSN 208
Query: 155 LSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKY 214
+ N+ TP + K+ +++ + + + G L +V GS P+L+ I Y
Sbjct: 209 MPPNVLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGKGSKHKPRLVTITY 268
Query: 215 MNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELN 274
EAPI LVGKG+T+D+GG SIK M MK+DMCGAA+++G + A S + L +N
Sbjct: 269 NGKDKDEAPIALVGKGITYDSGGYSIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPVN 328
Query: 275 IIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVI 334
I+GV+ +ENM++ S KP D+ ++SG+T+EV++TDAEGRL+L DA+ Y +++PSV++
Sbjct: 329 IVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVFYANQYQPSVIM 388
Query: 335 DIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLK 394
D ATLTGA +VALG + F N + ++ D+L+ + + +PI + +K
Sbjct: 389 DFATLTGAAIVALGDDKAAAFESNSK---VILNDILQISSEVDEMVFELPITATERASIK 445
Query: 395 -SNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWKSGDK----KGAT 445
S+ AD+ N N ++ AA F+ +F+ + H DIAG A + KG T
Sbjct: 446 HSDIADLVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGPATTNKASYNGPKGPT 501
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
{Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
3t8w_A*
Length = 528
Score = 581 bits (1500), Expect = 0.0
Identities = 152/513 (29%), Positives = 256/513 (49%), Gaps = 23/513 (4%)
Query: 457 IMDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDKY--GEITNILKSGDLNE- 513
I D ++ + +++ + + K + VK K +++ LK ++ +
Sbjct: 24 IHDIKVQ-VYDIKGGCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKF 82
Query: 514 --KLGSTLLLRNI-QKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLL 570
KLG++ N+ + V G + E++ +++ S++ + + S L +
Sbjct: 83 NVKLGTSKHFYMFNDNKNSVAVGYVGCG-SVADLSEADMKRVVLSLVTMLHDNKLSKLTV 141
Query: 571 MLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGK 630
+ N + L + + + KS K + + K + + N K
Sbjct: 142 VFEINVDKN-----LFRFFLETLFYEYMTDERFKSTDKNVNMEYIKHLG-VYINNADTYK 195
Query: 631 NAIIYGCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKM 690
+ G L +N C P L N + +L+ ++ +I+ ++++ LKM
Sbjct: 196 EEVEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKM 255
Query: 691 GSLLSVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIK--PSYSMDEMKY 748
G+ LSV GS P K I + Y + + I LVGKG+TFD+GG ++K P +D MK+
Sbjct: 256 GAYLSVGKGSMYPNKFIHLTYKSKGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKF 315
Query: 749 DMCGAASILGTLYAISEMNLE-LNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDT 807
DM G A++LG Y + + E + I + ENM+S NS +PGDI+ + +GKTIEV +T
Sbjct: 316 DMSGCAAVLGCAYCVGTLKPENVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNT 375
Query: 808 DAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLL 867
DAEGRL L DAL Y E+ ++DIATLTGA + +LG +G+F N+E L+ +L
Sbjct: 376 DAEGRLTLADALVYAEKLGVDYIVDIATLTGAMLYSLGTSYAGVFGNNEE----LINKIL 431
Query: 868 RAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGNS-SADSITAACFLENFTKKYVWAHL 926
++ K S + W +PI + Y+ L S +ADI+ I +S A SI A+ FL+ F + WAH+
Sbjct: 432 QSSKTSNEPVWWLPIINEYRATLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHI 491
Query: 927 DIAGVAWKSGDKKGATGRPVTLLTYYLMLKSPN 959
DIAGV+W + G V LLT +++ + +
Sbjct: 492 DIAGVSWNFK-ARKPKGFGVRLLTEFVLNDALH 523
Score = 540 bits (1394), Expect = 0.0
Identities = 145/474 (30%), Positives = 231/474 (48%), Gaps = 36/474 (7%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDKY--GEITNILKSGDLNE---KLGSTLLLRNI-QK 55
+++ + + K + VK K +++ LK ++ + KLG++
Sbjct: 39 NVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKFNVKLGTSKHFYMFNDN 98
Query: 56 INAKRILLVNLGASNLLLMLPFNKI--------EKYNLSCLIIRTIIIISDN-------- 99
N+ + V G+ L ++ LS L + I + N
Sbjct: 99 KNSVAVGYVGCGSVADLSEADMKRVVLSLVTMLHDNKLSKLTVVFEINVDKNLFRFFLET 158
Query: 100 ----LYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNL 155
+ KS K + + K + + N K + G L
Sbjct: 159 LFYEYMTDERFKSTDKNVNMEYIKHLG-VYINNADTYKEEVEKARVYYFGTYYASQLIAA 217
Query: 156 SANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYM 215
+N C P L N + +L+ ++ +I+ ++++ LKMG+ LSV GS P K I + Y
Sbjct: 218 PSNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHLTYK 277
Query: 216 NGKFKEAPIVLVGKGVTFDTGGISIK--PSYSMDEMKYDMCGAASILGTLYAISEMNLE- 272
+ + I LVGKG+TFD+GG ++K P +D MK+DM G A++LG Y + + E
Sbjct: 278 SKGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPEN 337
Query: 273 LNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSV 332
+ I + ENM+S NS +PGDI+ + +GKTIEV +TDAEGRL L DAL Y E+
Sbjct: 338 VEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVDY 397
Query: 333 VIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQ 392
++DIATLTGA + +LG +G+F N+E L+ +L++ K S + W +PI + Y+
Sbjct: 398 IVDIATLTGAMLYSLGTSYAGVFGNNEE----LINKILQSSKTSNEPVWWLPIINEYRAT 453
Query: 393 LKSNFADISNIGNS-SADSITAACFLENFTKKYVWAHLDIAGVAWKSGDKKGAT 445
L S +ADI+ I +S A SI A+ FL+ F + WAH+DIAGV+W +
Sbjct: 454 LNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHIDIAGVSWNFK-ARKPK 506
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3
c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A
1bll_E* 2j9a_A* 2ewb_A*
Length = 484
Score = 552 bits (1424), Expect = 0.0
Identities = 166/497 (33%), Positives = 246/497 (49%), Gaps = 35/497 (7%)
Query: 476 TDCLVVGIFKKNK------LSSIVKDIDKY--GEITNILKSGDLNEKLGSTLLLRNIQKI 527
T LV+GI+ K K +S ++ +K G++ IL K G T + +
Sbjct: 1 TKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGLHE- 59
Query: 528 NAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNL-LLMLPFNKIEKYNLSCLI 586
+ +++V LG K I E + + G + L +P +++ +
Sbjct: 60 DFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAVAAGCRQIQDLEIPSVEVDPCGDAQAA 119
Query: 587 IRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELT 646
+ LY D K K+K + + + + + A G + G L
Sbjct: 120 AEGAV---LGLYEYDDLKQKRKVV---------VSAKLHGSEDQEAWQRGVLFASGQNLA 167
Query: 647 KNLGNLSANICTPTYLENISKKLSFDYKMDIEIINRE--QMQRLKMGSLLSVTHGSSEPP 704
+ L AN TPT I ++ + ++ R ++ +MGS LSV GS EPP
Sbjct: 168 RRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPP 227
Query: 705 KLIIIKYMNG-KFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAI 763
+ I Y E P+V VGKG+TFD+GGISIK + +MD M+ DM GAA+I + +
Sbjct: 228 VFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSA 287
Query: 764 SEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVE 823
++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +TDAEGRLIL DAL Y
Sbjct: 288 AKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAH 347
Query: 824 RFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIE 883
F P V+I+ ATLTGA +ALG +G+F+ + L L A +GD W MP+
Sbjct: 348 TFNPKVIINAATLTGAMDIALGSGATGVFTNSSW----LWNKLFEASIETGDRVWRMPLF 403
Query: 884 DRYQKQ-LKSNFADISNIGNS-SADSITAACFLENFTKKYVWAHLDIAGVAWKSGDK--- 938
+ Y +Q + AD++NIG SA + TAA FL+ F WAHLDIAGV +
Sbjct: 404 EHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYL 463
Query: 939 -KGATGRPVTLLTYYLM 954
KG GRP L +L
Sbjct: 464 RKGMAGRPTRTLIEFLF 480
Score = 524 bits (1353), Expect = e-178
Identities = 159/482 (32%), Positives = 234/482 (48%), Gaps = 55/482 (11%)
Query: 5 TDCLVVGIFKKNK------LSSIVKDIDKY--GEITNILKSGDLNEKLGSTLLLRNIQKI 56
T LV+GI+ K K +S ++ +K G++ IL K G T + +
Sbjct: 1 TKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGLHE- 59
Query: 57 NAKRILLVNLGASNLLLMLPFNKIEKY------------NLSCLIIRTIII--------- 95
+ +++V LG + N E + L I ++ +
Sbjct: 60 DFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAVAAGCRQIQDLEIPSVEVDPCGDAQAA 119
Query: 96 ---ISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNL 152
LY D K K+K + + + + + A G + G L + L
Sbjct: 120 AEGAVLGLYEYDDLKQKRKVV---------VSAKLHGSEDQEAWQRGVLFASGQNLARRL 170
Query: 153 GNLSANICTPTYLENISKKLSFDYKMDIEIINRE--QMQRLKMGSLLSVTHGSSEPPKLI 210
AN TPT I ++ + ++ R ++ +MGS LSV GS EPP +
Sbjct: 171 METPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFL 230
Query: 211 IIKYMNG-KFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEM 269
I Y E P+V VGKG+TFD+GGISIK + +MD M+ DM GAA+I + + +++
Sbjct: 231 EIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKL 290
Query: 270 NLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFK 329
+L +NI+G+ ENM SG + KPGD+V + +GKTI+V +TDAEGRLIL DAL Y F
Sbjct: 291 DLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHTFN 350
Query: 330 PSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRY 389
P V+I+ ATLTGA +ALG +G+F+ + L L A +GD W MP+ + Y
Sbjct: 351 PKVIINAATLTGAMDIALGSGATGVFTNSSW----LWNKLFEASIETGDRVWRMPLFEHY 406
Query: 390 QKQ-LKSNFADISNIGNS-SADSITAACFLENFTKKYVWAHLDIAGVAWKSGDK----KG 443
+Q + AD++NIG SA + TAA FL+ F WAHLDIAGV + KG
Sbjct: 407 TRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKG 466
Query: 444 AT 445
Sbjct: 467 MA 468
>4efd_A Aminopeptidase; structural genomics, structural genomics
consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei
brucei}
Length = 522
Score = 525 bits (1353), Expect = e-177
Identities = 112/507 (22%), Positives = 207/507 (40%), Gaps = 30/507 (5%)
Query: 461 DIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDKY--GEITNILKSGDLNEKLGST 518
D+ S + + L V + +L + + ++ G
Sbjct: 31 DVAAYESNQK--GVLSSGLAVLVGTHKQLRDPAVQRLPFYNPAVAEAIERVKEGGTYGVL 88
Query: 519 L-LLRNIQKINAKRILLVNLGDKKKK-IKESNFIKIIQSIMNVFCNIGASNLLLMLPFNK 576
+ L N R+++ + K + + + + + N + +
Sbjct: 89 VEGLANAAGSKFVRVVVGEVPTKASRNNCPARPDVVTALVTAALDEVKEPNTTVDVFVLS 148
Query: 577 IEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYG 636
++ + R + A+ + K +
Sbjct: 149 NAVLPIAAAVARCG------KHNFSAKDGAAAAAYNSGKVSRLQVVFPE--PPAIPPKDL 200
Query: 637 CAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSV 696
A++ +L + L + N+ T I++ + D+++I + + G + SV
Sbjct: 201 EAVATSTQLCQRLVDAPPNLLTTATFTEIAQGYAKALGFDVDVICGDDLCERGYGGIYSV 260
Query: 697 THGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASI 756
+ E P+L+ + Y + LVGKG+ +D GG+++KP+ M MK+DM GAA++
Sbjct: 261 GKAAFEAPRLVTLLYTPKGTPVKKVSLVGKGIVYDCGGLALKPADYMKLMKHDMGGAAAV 320
Query: 757 LGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILC 816
+ + + + +EN + S + DI+V SGKT+EV++TDAEGR++L
Sbjct: 321 FCGFLTAVRLQQPVQLSCTLCLAENAIGPKSYRNDDIIVMKSGKTVEVINTDAEGRIVLG 380
Query: 817 DALTYVER---FKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMS 873
D + + F P VVID+ATLTGA +A G H++GL+ + +LRAG+ S
Sbjct: 381 DGVFHATNELSFTPDVVIDMATLTGAQGIATGRHHAGLYVNEEG----AEAAMLRAGRES 436
Query: 874 GDTAWNMPI-EDRYQKQLKSNFADISNIGN--SSADSITAACFLENFTKK---YVWAHLD 927
G+T + + + ++ + KSN AD++N+ +A A F+ H+D
Sbjct: 437 GETCFPVLYCPEYHEPEFKSNHADMTNLMERRDNAGVSCAGYFITTHLSPKFTGAHIHVD 496
Query: 928 IAGVAWKSGDKKGATGRPVTLLTYYLM 954
+A + S GATG LLT Y
Sbjct: 497 LAYPVFNS---NGATGFGPALLTEYFR 520
Score = 497 bits (1282), Expect = e-167
Identities = 105/477 (22%), Positives = 192/477 (40%), Gaps = 42/477 (8%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDKY--GEITNILKSGDLNEKLGSTL-LLRNIQKINA 58
+ + L V + +L + + ++ G + L N
Sbjct: 41 GVLSSGLAVLVGTHKQLRDPAVQRLPFYNPAVAEAIERVKEGGTYGVLVEGLANAAGSKF 100
Query: 59 KRILLVNLGASNLLLMLPFN-----KIEKYNLSCLIIRTIIIISDNL------------- 100
R+++ + P + L + + L
Sbjct: 101 VRVVVGEVPTKASRNNCPARPDVVTALVTAALDEVKEPNTTVDVFVLSNAVLPIAAAVAR 160
Query: 101 ---YRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLSA 157
+ A+ + K + A++ +L + L +
Sbjct: 161 CGKHNFSAKDGAAAAAYNSGKVSRLQVVFPE--PPAIPPKDLEAVATSTQLCQRLVDAPP 218
Query: 158 NICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNG 217
N+ T I++ + D+++I + + G + SV + E P+L+ + Y
Sbjct: 219 NLLTTATFTEIAQGYAKALGFDVDVICGDDLCERGYGGIYSVGKAAFEAPRLVTLLYTPK 278
Query: 218 KFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIG 277
+ LVGKG+ +D GG+++KP+ M MK+DM GAA++ + + +
Sbjct: 279 GTPVKKVSLVGKGIVYDCGGLALKPADYMKLMKHDMGGAAAVFCGFLTAVRLQQPVQLSC 338
Query: 278 VIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVER---FKPSVVI 334
+ +EN + S + DI+V SGKT+EV++TDAEGR++L D + + F P VVI
Sbjct: 339 TLCLAENAIGPKSYRNDDIIVMKSGKTVEVINTDAEGRIVLGDGVFHATNELSFTPDVVI 398
Query: 335 DIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPI-EDRYQKQL 393
D+ATLTGA +A G H++GL+ + +LRAG+ SG+T + + + ++ +
Sbjct: 399 DMATLTGAQGIATGRHHAGLYVNEEG----AEAAMLRAGRESGETCFPVLYCPEYHEPEF 454
Query: 394 KSNFADISNIGN--SSADSITAACFLENFTKK---YVWAHLDIAGVAWKSGDKKGAT 445
KSN AD++N+ +A A F+ H+D+A + S GAT
Sbjct: 455 KSNHADMTNLMERRDNAGVSCAGYFITTHLSPKFTGAHIHVDLAYPVFNS---NGAT 508
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics; 1.85A {Caenorhabditis elegans} PDB:
2hb6_A
Length = 491
Score = 486 bits (1254), Expect = e-163
Identities = 117/507 (23%), Positives = 199/507 (39%), Gaps = 41/507 (8%)
Query: 461 DIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGDLNEKLGSTLL 520
+ + + ++ T ++VG +K++ G+ + + + ++++
Sbjct: 3 QVLVRNGIQAVGDGLTSLIIVGKKSV------LKNVTFEGKFKEVAQKFVTDGDSWNSMI 56
Query: 521 LRNIQKINAKRIL----LVNLGDKK-KKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFN 575
R L+ + D + +N I + + + N+ +L
Sbjct: 57 SRIPASGRHPLHYELAHLITVPDASSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFAE 116
Query: 576 KIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIY 635
+ + I K I+ I D+ ++
Sbjct: 117 YPDVLSHVAAI----------ARTFCKFSMKTSGIRELNVNIDVVCDKLT----NEDAVF 162
Query: 636 GCAISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLS 695
+S+ + T L + ANI T L + + K+ I +I E++ + G +
Sbjct: 163 LTDLSESVRETARLIDTPANILTTDALVDEAVKVGNATGSKITVIRGEELLKAGFGGIYH 222
Query: 696 VTHGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAAS 755
V PP +++ + I LVGKGV +DTGG+ IK M MK DM GAA
Sbjct: 223 VGKAGPTPPAFVVLSH-EVPGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAG 281
Query: 756 ILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLIL 815
+L A+ + + + EN +S + KP DI+ +SGKT+E+ +TDAEGRLIL
Sbjct: 282 MLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLIL 341
Query: 816 CDALTY-VERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 874
D + Y E K + + D+ATLTGA G + + +++ L ++++AGK SG
Sbjct: 342 ADGVFYAKETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQ----LENEIIKAGKASG 397
Query: 875 DTAWNMPI-EDRYQKQLKSNFADISNIGNSS---ADSITAACFLENF---TKKYVWAHLD 927
D M D + LKS+ AD+ N S A + + W HLD
Sbjct: 398 DLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWLHLD 457
Query: 928 IAGVAWKSGDKKGATGRPVTLLTYYLM 954
IA A TG L + L
Sbjct: 458 IAAPAEVG---DRGTGYGPALFSTLLG 481
Score = 465 bits (1198), Expect = e-155
Identities = 101/353 (28%), Positives = 153/353 (43%), Gaps = 20/353 (5%)
Query: 101 YRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLSANIC 160
K I+ I D+ ++ +S+ + T L + ANI
Sbjct: 129 RTFCKFSMKTSGIRELNVNIDVVCDKLT----NEDAVFLTDLSESVRETARLIDTPANIL 184
Query: 161 TPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFK 220
T L + + K+ I +I E++ + G + V PP +++ +
Sbjct: 185 TTDALVDEAVKVGNATGSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSH-EVPGS 243
Query: 221 EAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIV 280
I LVGKGV +DTGG+ IK M MK DM GAA +L A+ + + +
Sbjct: 244 TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLC 303
Query: 281 ASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTY-VERFKPSVVIDIATL 339
EN +S + KP DI+ +SGKT+E+ +TDAEGRLIL D + Y E K + + D+ATL
Sbjct: 304 IVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIFDMATL 363
Query: 340 TGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPI-EDRYQKQLKSNFA 398
TGA G + + +++ L ++++AGK SGD M D + LKS+ A
Sbjct: 364 TGAQAWLSGRLHGAAMTNDEQ----LENEIIKAGKASGDLVAPMLFAPDLFFGDLKSSIA 419
Query: 399 DISNIGNSS---ADSITAACFLENF---TKKYVWAHLDIAGVAWKSGDKKGAT 445
D+ N S A + + W HLDIA A T
Sbjct: 420 DMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWLHLDIAAPAEVG---DRGT 469
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962
aminopeptidase, hydrolase, manganese, metal-binding,
protea structural genomics; HET: PGE PG4; 1.80A
{Coxiella burnetii}
Length = 482
Score = 476 bits (1227), Expect = e-159
Identities = 128/501 (25%), Positives = 216/501 (43%), Gaps = 44/501 (8%)
Query: 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGDLNEKLGS 517
+ F ++ + K + + + ++L + D +K+ G+
Sbjct: 18 LYFQSNAMADCY-LTEKKKNFIPIQPMMPDELPDWLDTQD--ARTQQWVKASGFVGLAGT 74
Query: 518 TLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKI 577
+ A + +L+ + D + K++ + L F
Sbjct: 75 ICSIPESTG--ALQRVLLGVSDYEYSWDFGGLSKVLPP---------GAFQLNRDDFEDD 123
Query: 578 EKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGC 637
E Y + L Y+ +A + + + K+ + +
Sbjct: 124 EYYERALLAFG------LGSYQFNAYRKRSPYLA----KLFLPQAHRKRVT--------- 164
Query: 638 AISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKMGSLLSVT 697
I L ++L N A P+ L K ++ +++ ++II + ++ + ++ +V
Sbjct: 165 DWLTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFEAKVKIIESKDLET-EFPAIYAVG 223
Query: 698 HGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASIL 757
S PP LI +K+ G K + LVGKGV FD+GG+ IK M MK DM GAA L
Sbjct: 224 RAGSRPPLLIDLKW--GDIKAPKVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHAL 281
Query: 758 GTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCD 817
G I L + + +I A EN + S +PGD+V + + KTIE+ +TDAEGR++L D
Sbjct: 282 GLARMIMLQQLPVRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAEGRVVLAD 341
Query: 818 ALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDTA 877
AL + P ++ID +TLTGA +ALG + LF+ D L L+ A + D
Sbjct: 342 ALAEAVKEDPDLIIDFSTLTGAARIALGPNLPALFANQDS----LAQALIDASLKTDDPL 397
Query: 878 WNMPIEDRYQKQLKSNFADISNIGNS-SADSITAACFLENFTKKYV-WAHLDIAGVAWKS 935
W +P+ Y+ LKS AD++N + A +ITAA FL++F + WAH DI +
Sbjct: 398 WRLPLFQPYRNYLKSEVADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDIFAWNLED 457
Query: 936 --GDKKGATGRPVTLLTYYLM 954
G G + + +YL
Sbjct: 458 LPGRPIGGEAMALRAVFHYLE 478
Score = 462 bits (1192), Expect = e-154
Identities = 122/460 (26%), Positives = 201/460 (43%), Gaps = 45/460 (9%)
Query: 4 KTDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILL 63
K + + + ++L + D +K+ G+ + A + +L
Sbjct: 34 KKNFIPIQPMMPDELPDWLDTQD--ARTQQWVKASGFVGLAGTICSIPESTG--ALQRVL 89
Query: 64 VNLG-------ASNLLLMLPFNKIEKYNLSCLIIRTIIIISD-------NLYRSDAQKSK 109
+ + L +LP + L+ Y+ +A + +
Sbjct: 90 LGVSDYEYSWDFGGLSKVLP---PGAFQLNRDDFEDDEYYERALLAFGLGSYQFNAYRKR 146
Query: 110 KKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLSANICTPTYLENIS 169
+ K+ + + I L ++L N A P+ L
Sbjct: 147 SPYLA----KLFLPQAHRKRVT---------DWLTTIYLIRDLINTPAEDMGPSELAQAV 193
Query: 170 KKLSFDYKMDIEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKFKEAPIVLVGK 229
K ++ +++ ++II + ++ + ++ +V S PP LI +K+ G K + LVGK
Sbjct: 194 KHVAKEFEAKVKIIESKDLET-EFPAIYAVGRAGSRPPLLIDLKW--GDIKAPKVTLVGK 250
Query: 230 GVTFDTGGISIKPSYSMDEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGN 289
GV FD+GG+ IK M MK DM GAA LG I L + + +I A EN +
Sbjct: 251 GVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSR 310
Query: 290 STKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPSVVIDIATLTGACVVALGH 349
S +PGD+V + + KTIE+ +TDAEGR++L DAL + P ++ID +TLTGA +ALG
Sbjct: 311 SYRPGDVVQTRARKTIEITNTDAEGRVVLADALAEAVKEDPDLIIDFSTLTGAARIALGP 370
Query: 350 HNSGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGNS-SA 408
+ LF+ D L L+ A + D W +P+ Y+ LKS AD++N + A
Sbjct: 371 NLPALFANQDS----LAQALIDASLKTDDPLWRLPLFQPYRNYLKSEVADLTNSSQNRMA 426
Query: 409 DSITAACFLENFTKKYV-WAHLDIAGVAWKS--GDKKGAT 445
+ITAA FL++F + WAH DI + G G
Sbjct: 427 GAITAALFLQHFVSDQIPWAHFDIFAWNLEDLPGRPIGGE 466
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 1e-12
Identities = 98/630 (15%), Positives = 193/630 (30%), Gaps = 158/630 (25%)
Query: 52 NIQKINAKRILLVNLGASNLLLMLPFNKIEKYNLSCLI---IRTIIIISDNLYRS----D 104
+ K IL V + ++ S L I II+ D + +
Sbjct: 12 GEHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 105 AQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAISKGIELTKNLGNLSANICTPTY 164
SK++ + ++K + + NY + I + T Y
Sbjct: 70 TLLSKQEEM---VQKFVEEVLRINYKFLMSPIKTEQRQPSMM--------------TRMY 112
Query: 165 LENISKKLS----FDYKMDIEIINR-EQMQRLKMGSLLSVTHGSSEPPKLIIIKYMNGKF 219
+E + + F K ++ +R + +L+ LL + P K ++I + G
Sbjct: 113 IEQRDRLYNDNQVFA-KYNV---SRLQPYLKLRQA-LLEL-----RPAKNVLIDGVLGSG 162
Query: 220 KEAPIVLVGKGV-------TFDTGG--ISIKPSYSMD---EMKYDMCGAASILGTLYAIS 267
K + D +++K S + EM + T +
Sbjct: 163 KT---WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 268 EMNLELNIIGVIVASENMLSGNSTKPGDIV---VSMSGKTIEVLDTDAEGRLILCDAL-- 322
N++L I + +L + +V V + K + + C L
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFN-------LSCKILLT 271
Query: 323 TYVERFKPSVVIDIATLTGACVVALGHHNSG--------LFS-----------RNDEKHT 363
T RFK V D + ++L HH+ L R
Sbjct: 272 T---RFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 364 KLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTK- 422
L ++ G W D ++ N ++ I SS + + A + + F +
Sbjct: 327 PRRLSIIAESIRDGLATW-----DNWK---HVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 423 ----KYVWAHLDIAGVAWKSGDKKGATVELYLNK-KEKIIMDFDIKLISSTTSIMSL--K 475
+ + W D + V + +NK + +++ K ST SI S+ +
Sbjct: 379 SVFPPSAHIPTILLSLIW--FDVIKSDVMVVVNKLHKYSLVEKQPK--ESTISIPSIYLE 434
Query: 476 TDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGDLNEKLGSTL-------------LLR 522
+ + ++ +D Y NI K+ D ++ + L +
Sbjct: 435 LKVKLENEYALHR-----SIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 523 NIQKINAKRILLVNLGDKKKKIKESNFI--KIIQSIMNVFCNIGASNLLLMLPFNKIEKY 580
+ +++ R++ ++ F+ KI + N L L + Y
Sbjct: 486 HPERMTLFRMVFLDF----------RFLEQKIRHDSTAWNASGSILNTLQQL--KFYKPY 533
Query: 581 ---------NLSCLIIRTIIIISDNLYRSD 601
L I+ + I +NL S
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSK 563
Score = 69.9 bits (170), Expect = 3e-12
Identities = 92/631 (14%), Positives = 185/631 (29%), Gaps = 197/631 (31%)
Query: 428 HLDIAGVAWKSGDKKGATVELYLNKKEKIIMDFDIKLISSTTSIMSLKTDCLVVGIFKKN 487
H+D +++G+ + ++ ++ + +FD K + I K
Sbjct: 6 HMD-----FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-----------SILSKE 49
Query: 488 KLSSIVKDIDKYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGDKKKKIKES 547
EI +I+ S D ++ L L K++++ +
Sbjct: 50 -------------EIDHIIMSKD---------------AVSGTLRLFWTLLSKQEEMVQK 81
Query: 548 NFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDNLYRSDAQKSKK 607
++++ N LM P + ++ R I D LY D Q K
Sbjct: 82 FVEEVLRI------NYK----FLMSPIK--TEQRQPSMMTRMYIEQRDRLYN-DNQVFAK 128
Query: 608 KPI-----KINIKKIIFALDEKNYIDGKNAIIYG--------------------CAISKG 642
+ + +++ + L + +I G C +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNV-----LIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 643 I------------ELTKNLGNLSANICTPTYLENISKKLSFDYKMDIEIINREQMQRLKM 690
I + + L L I P + S + K+ I I + +++RL
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDH--SSNIKLRIHSI-QAELRRL-- 237
Query: 691 GSLLSVTHGSSEPPKLII---------IKYMNGKFKEAPIVLV---GKGVTFDTGGISIK 738
L S + + L++ N K +L+ K VT +
Sbjct: 238 --LKSKPYENC----LLVLLNVQNAKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTT 287
Query: 739 --------PSYSMDEMKYDMCGAASILGTLY------AISEMNLELNIIGVIVASENMLS 784
+ + DE+K + L ++ L+II +
Sbjct: 288 HISLDHHSMTLTPDEVK-SLL--LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 785 GNSTKPG-DIVVSMSGKTIEVLDTDAEGRLILCDALTYVER--FKPSVVIDIATL----- 836
N D + ++ ++ VL+ ++ + F PS I L
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------FDRLSVFPPSAHIPTILLSLIWF 397
Query: 837 --TGACV--VALGHHNSGLFSRNDEKHTKLVLDLLR--AGKMSGDTAWNMPIEDRYQKQL 890
+ V V H L + ++ T + + K+ + A + I D Y
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 891 KSNFADIS-----------------NIGNSSADSITAACFLENFTKKYVWAHLDIAGVAW 933
+ D+ NI + ++ FL +F +++ + AW
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DF--RFLEQKIRHDSTAW 514
Query: 934 KSGDKKGATGRPVTLLT----Y--YLMLKSP 958
A+G + L Y Y+ P
Sbjct: 515 ------NASGSILNTLQQLKFYKPYICDNDP 539
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 1e-05
Identities = 55/369 (14%), Positives = 102/369 (27%), Gaps = 145/369 (39%)
Query: 490 SSIVKDI----DKYGEITNILKSGDLNEKLGSTLLLRNIQKINAKRILLVNLGDKKKKIK 545
S +D+ D + + G ++L +I N + + G+K K+I+
Sbjct: 1639 SKAAQDVWNRADNH-----------FKDTYGFSIL--DIVINNPVNLTIHFGGEKGKRIR 1685
Query: 546 ESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLIIRTIIIISDN--LYR-SDA 602
E N+ +I L K + + R S+ L
Sbjct: 1686 E-NYSAMI-------FETIVDGKLKTEKIFKEINEHSTSYTFR-----SEKGLLSATQFT 1732
Query: 603 QKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAI-----SKGIELTKN------LGN 651
Q P + + A SKG+ LG
Sbjct: 1733 Q-----P-------ALTLM--------------EKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 652 LSANICTPTYLENISKKLSFDYKMD-IEIINREQMQRLKMGSLLSVTHGSSEPPKLIIIK 710
+A ++ +S + +E++ R G +
Sbjct: 1767 YAALAS-------LADVMSIE---SLVEVVF----YR---GMTMQ--------------- 1794
Query: 711 YMNGKFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAA--SILGTLYAISEMNL 768
P +G+ + G I+I P + A ++ + + +
Sbjct: 1795 ------VAVPRDELGRS---NYGMIAINPG----RVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 769 ELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILCDALTYVERFKPS 828
E IV N N V+ +G + LDT + + L +++ K
Sbjct: 1842 E------IV---NY---NV--ENQQYVA-AG-DLRALDT-------VTNVLNFIKLQK-- 1876
Query: 829 VVIDIATLT 837
IDI L
Sbjct: 1877 --IDIIELQ 1883
Score = 45.4 bits (107), Expect = 1e-04
Identities = 119/726 (16%), Positives = 215/726 (29%), Gaps = 252/726 (34%)
Query: 197 LSVTHGSSE-----PPKLIIIKYMNG-----KF-KEAPIVLVGKGVTFDTGGISIKPSYS 245
L+++HGS E P + +F K P + +P+ +
Sbjct: 9 LTLSHGSLEHVLLVPTAS----FFIASQLQEQFNKILPEPT-------EGFAADDEPT-T 56
Query: 246 MDEMKYDMCGAASILG---TLYAISEMNLELNIIGVIVAS--ENMLSGNSTKPGDI---V 297
E+ LG +L S++ ++ + + L GN DI
Sbjct: 57 PAEL------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-----DIHALA 105
Query: 298 VSMSGKTIEVLDTDAEGRLILCDAL--TYVERFKPSVVIDIATLTGACVVA----LGHHN 351
L + + L+ L Y+ A ++A N
Sbjct: 106 AK--------LLQENDTTLVKTKELIKNYIT---------------ARIMAKRPFDKKSN 142
Query: 352 SGLFSRNDEKHTKLVLDLLRAGKMSGDTAWNMPIEDRYQKQLKSNFADISNIGNSSADSI 411
S LF E + +LV + G+ G+T D Y ++L+ D+ + +
Sbjct: 143 SALFRAVGEGNAQLVA--IFGGQ--GNT-------DDYFEELR----DLYQTYHVLVGDL 187
Query: 412 --TAACFLENFTK-----KYVWAH-LDIAGVAWKSGDKKGATVELYLNKKEKIIMDFDIK 463
+A L + + V+ L+I + W L D D
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNI--LEW-------------LENPSNT-PDKDY- 230
Query: 464 LISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDKYGEITNILKSGDLNEKL-GSTLLLR 522
L+S S C ++G+ + L+ V G G+L L G+T +
Sbjct: 231 LLSIPIS-------CPLIGVIQ---LAHYVVTAKLLG-----FTPGELRSYLKGATGHSQ 275
Query: 523 NIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNL 582
+ + A + + D +F ++ + V IG E Y
Sbjct: 276 GL--VTA---VAIAETDS-----WESFFVSVRKAITVLFFIGVRCY---------EAYPN 316
Query: 583 SCLIIRTIIIISDNLYRSDAQKSKKKP---IK-INIKKIIFALDEKN-YIDGKNAIIYGC 637
+ L I+ D+L ++ S P I + +++ +++ N ++ +
Sbjct: 317 TSL---PPSILEDSLENNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPAGKQV---- 366
Query: 638 AISKGIELTKNLGNLSAN--ICT--PTYLENIS---KKLSFDYKMDIEIINREQM-QRLK 689
IS L N A + + P L ++ +K +D +R +R
Sbjct: 367 EIS--------LVN-GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ---SRIPFSERKL 414
Query: 690 MGSL--LSVT---HGSSEPPKLIIIKYMNGKFKEAPIVLVGKGVTFDTGGISIKPSYS-M 743
S L V H S + LV V+F+ I I P Y
Sbjct: 415 KFSNRFLPVASPFH-SH---------LLVPASDLINKDLVKNNVSFNAKDIQI-PVYDTF 463
Query: 744 DEMKYDMCGAASILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIE 803
D D+ + ++ I+ I+ P + K
Sbjct: 464 DG--SDLRVLSG-----------SISERIVDCII----------RLPVKWETTTQFKATH 500
Query: 804 VLDTDAEGRLILCDALTYVERFKPSVVIDIATLT-------GACVVALGHHNSGLFSRND 856
+LD F P + LT G V+ G + +D
Sbjct: 501 ILD------------------FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN---PDD 539
Query: 857 E---KH 859
+ K
Sbjct: 540 DYGFKQ 545
Score = 38.9 bits (90), Expect = 0.010
Identities = 43/310 (13%), Positives = 89/310 (28%), Gaps = 131/310 (42%)
Query: 295 DIVVSMSGKTIEVLDTDAEGRLI--LCDALTYVERFKPSVVIDIATLTGACVVALGHHNS 352
DIV++ + + + +G+ I A+ + T+ +
Sbjct: 1663 DIVIN-NPVNLTIHFGGEKGKRIRENYSAMIF------------ETIVDGKLKTEK---- 1705
Query: 353 GLFSRNDEKHTKLVL----DLLRAGKMSGDT-------------AWNMPIEDRYQKQLKS 395
+F +E T LL A T A+ ++ + +
Sbjct: 1706 -IFKEINEHSTSYTFRSEKGLLSA------TQFTQPALTLMEKAAFED-LKSKGLIPADA 1757
Query: 396 NFADISNIGNS----SADSITAACFLENFTKKYVWAHLDIAGVAWKSGDKKGATVELYLN 451
FA G+S +A A +A V
Sbjct: 1758 TFA-----GHSLGEYAA----LAS---------------LADV----------------- 1776
Query: 452 KKEKIIMDFD--IKLI-----------------SSTTSIMSLKTDCLVVGIFKKNKLSSI 492
M + ++++ S ++++ V F + L +
Sbjct: 1777 ------MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG-RVAASFSQEALQYV 1829
Query: 493 VKDIDKYG----EITN-------ILKSGDLN--EKLGSTLLLRNIQKINAKRILLVNLGD 539
V+ + K EI N + +GDL + + + L +QKI+ L +L
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE-LQKSL-- 1886
Query: 540 KKKKIKESNF 549
++++ F
Sbjct: 1887 SLEEVEGHLF 1896
Score = 36.2 bits (83), Expect = 0.073
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 23/87 (26%)
Query: 9 VVGIFKKNKLSSIVKDIDKYG----EITN-------ILKSGDLN--EKLGSTLLLRNIQK 55
V F + L +V+ + K EI N + +GDL + + + L +QK
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Query: 56 INAKRILLVNLGASNLLLMLPFNKIEK 82
I+ ++ L S L ++E
Sbjct: 1877 ID-----IIELQKS-----LSLEEVEG 1893
Score = 31.6 bits (71), Expect = 1.6
Identities = 70/490 (14%), Positives = 144/490 (29%), Gaps = 165/490 (33%)
Query: 8 LVVGIFKKNKLS-----SIVKDIDKYGEIT-----NILKS--------GDLNEKLGSTLL 49
L + F+ L ++ + + + T ++K+ +K ++ L
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 50 LRNIQKINAKRILLVNL----GASNLLLMLPFNKIEK-YNLSCLIIRTIIIISD----NL 100
R + + NA+ LV + G ++ F ++ Y +++ +I S L
Sbjct: 146 FRAVGEGNAQ---LVAIFGGQGNTDD----YFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 101 YRSDAQKSKKKPIKINIKKIIFALDEKNYIDGKNAIIYGCAIS-KGIELT---------K 150
R+ K +NI + L+ + K+ ++ IS I + K
Sbjct: 199 IRTTLDAEKVFTQGLNILE---WLENPSNTPDKDYLLS-IPISCPLIGVIQLAHYVVTAK 254
Query: 151 NLG----NLSANICTPT--------------------YLENISKKLSFDYKMDIEIINRE 186
LG L + + T + ++ K ++ + + + E
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC--YE 312
Query: 187 QMQRLKMGSLL---SVTHGSSEP-PKLII-----------IKYMNGKFKEA--------- 222
+ + S+ + P P L I + N
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 223 ----------PIVLVGKGVTF---------DTGGISI---KPSYSMDEMKYDMCGA---A 257
P L G +T D I K +S ++ + +
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN---RFLPVASPFHS 429
Query: 258 SILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVV--SMSGKTIEVLDTDAEGR 315
+L A +N +L V ++++ I V + G + VL R
Sbjct: 430 HLLVP--ASDLINKDLVKNNVSFNAKDI---------QIPVYDTFDGSDLRVLSGSISER 478
Query: 316 L---ILCDAL----------TYVERFKPSVVIDIATLT-------GACVVALGHHNSGLF 355
+ I+ + T++ F P + LT G V+ G +
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN-- 536
Query: 356 SRNDE---KH 362
+D+ K
Sbjct: 537 -PDDDYGFKQ 545
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.381
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,353,392
Number of extensions: 912454
Number of successful extensions: 1968
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1837
Number of HSP's successfully gapped: 43
Length of query: 963
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 860
Effective length of database: 3,825,930
Effective search space: 3290299800
Effective search space used: 3290299800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.8 bits)