RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3774
(963 letters)
>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal
domain {Escherichia coli, PepA [TaxId: 562]}
Length = 325
Score = 310 bits (794), Expect = 2e-98
Identities = 170/320 (53%), Positives = 231/320 (72%), Gaps = 7/320 (2%)
Query: 638 AISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDI--EIINREQMQRLKMGSLLS 695
AI+ GI+ K+LGN+ NIC YL + +++L+ Y ++ +I +QM+ L M S L+
Sbjct: 1 AIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLA 60
Query: 696 VTHGSSEPPKLIIIKYMNGKFKEA-PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAA 754
V GS + +I+Y ++A PIVLVGKG+TFD+GGISIKPS MDEMKYDMCGAA
Sbjct: 61 VGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAA 120
Query: 755 SILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI 814
++ G + ++E+ L +N+IGV+ ENM G + +PGD++ +MSG+T+EVL+TDAEGRL+
Sbjct: 121 AVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLV 180
Query: 815 LCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 874
LCD LTYVERF+P VID+ATLTGACV+ALGHH +GL + ++ +L+ A + SG
Sbjct: 181 LCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELI----AASEQSG 236
Query: 875 DTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWK 934
D AW +P+ D YQ+QL+SNFAD++NIG +ITA CFL FT+KY WAHLDIAG AW+
Sbjct: 237 DRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWR 296
Query: 935 SGDKKGATGRPVTLLTYYLM 954
SG KGATGRPV LL +L+
Sbjct: 297 SGKAKGATGRPVALLAQFLL 316
Score = 293 bits (752), Expect = 3e-92
Identities = 165/322 (51%), Positives = 226/322 (70%), Gaps = 14/322 (4%)
Query: 141 AISKGIELTKNLGNLSANICTPTYLENISKKLSFDYKMDI--EIINREQMQRLKMGSLLS 198
AI+ GI+ K+LGN+ NIC YL + +++L+ Y ++ +I +QM+ L M S L+
Sbjct: 1 AIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLA 60
Query: 199 VTHGSSEPPKLIIIKYMNGKFKEA-PIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAA 257
V GS + +I+Y ++A PIVLVGKG+TFD+GGISIKPS MDEMKYDMCGAA
Sbjct: 61 VGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAA 120
Query: 258 SILGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLI 317
++ G + ++E+ L +N+IGV+ ENM G + +PGD++ +MSG+T+EVL+TDAEGRL+
Sbjct: 121 AVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLV 180
Query: 318 LCDALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSG 377
LCD LTYVERF+P VID+ATLTGACV+ALGHH +GL + ++ +L+ A + SG
Sbjct: 181 LCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELI----AASEQSG 236
Query: 378 DTAWNMPIEDRYQKQLKSNFADISNIGNSSADSITAACFLENFTKKYVWAHLDIAGVAWK 437
D AW +P+ D YQ+QL+SNFAD++NIG +ITA CFL FT+KY WAHLDIAG AW+
Sbjct: 237 DRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWR 296
Query: 438 SGDKKGAT-------VELYLNK 452
SG KGAT + LN+
Sbjct: 297 SGKAKGATGRPVALLAQFLLNR 318
>d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 325
Score = 261 bits (667), Expect = 4e-80
Identities = 136/324 (41%), Positives = 185/324 (57%), Gaps = 13/324 (4%)
Query: 640 SKGIELTKNLGNLSANICTPTYLENISKKL--SFDYKMDIEIINREQMQRLKMGSLLSVT 697
+ G L + L AN TPT I ++ S K D+ I + ++ +MGS LSV
Sbjct: 2 ASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVA 61
Query: 698 HGSSEPPKLIIIKYMNG-KFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASI 756
GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M+ DM GAA+I
Sbjct: 62 KGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATI 121
Query: 757 LGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILC 816
+ + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +TDAEGRLIL
Sbjct: 122 CSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILA 181
Query: 817 DALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDT 876
DAL Y F P V+I+ ATLTGA +ALG +G+F+ + KL A +GD
Sbjct: 182 DALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLF----EASIETGDR 237
Query: 877 AWNMP-IEDRYQKQLKSNFADISNIGNS-SADSITAACFLENFTKKYVWAHLDIAGVAWK 934
W MP E ++ + AD++NIG SA + TAA FL+ F WAHLDIAGV
Sbjct: 238 VWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTN 297
Query: 935 SGDK----KGATGRPVTLLTYYLM 954
+ KG GRP L +L
Sbjct: 298 KDEVPYLRKGMAGRPTRTLIEFLF 321
Score = 246 bits (628), Expect = 1e-74
Identities = 131/312 (41%), Positives = 179/312 (57%), Gaps = 13/312 (4%)
Query: 143 SKGIELTKNLGNLSANICTPTYLENISKKL--SFDYKMDIEIINREQMQRLKMGSLLSVT 200
+ G L + L AN TPT I ++ S K D+ I + ++ +MGS LSV
Sbjct: 2 ASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVA 61
Query: 201 HGSSEPPKLIIIKYMNG-KFKEAPIVLVGKGVTFDTGGISIKPSYSMDEMKYDMCGAASI 259
GS EPP + I Y E P+V VGKG+TFD+GGISIK + +MD M+ DM GAA+I
Sbjct: 62 KGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATI 121
Query: 260 LGTLYAISEMNLELNIIGVIVASENMLSGNSTKPGDIVVSMSGKTIEVLDTDAEGRLILC 319
+ + ++++L +NI+G+ ENM SG + KPGD+V + +GKTI+V +TDAEGRLIL
Sbjct: 122 CSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILA 181
Query: 320 DALTYVERFKPSVVIDIATLTGACVVALGHHNSGLFSRNDEKHTKLVLDLLRAGKMSGDT 379
DAL Y F P V+I+ ATLTGA +ALG +G+F+ + KL A +GD
Sbjct: 182 DALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLF----EASIETGDR 237
Query: 380 AWNMP-IEDRYQKQLKSNFADISNIGNS-SADSITAACFLENFTKKYVWAHLDIAGVAWK 437
W MP E ++ + AD++NIG SA + TAA FL+ F WAHLDIAGV
Sbjct: 238 VWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTN 297
Query: 438 SGDK----KGAT 445
+ KG
Sbjct: 298 KDEVPYLRKGMA 309
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase
A), N-terminal domain {Escherichia coli, PepA [TaxId:
562]}
Length = 178
Score = 94.5 bits (234), Expect = 8e-23
Identities = 49/182 (26%), Positives = 98/182 (53%), Gaps = 8/182 (4%)
Query: 458 MDFDIKLISSTTSIMSLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKL 515
M+F +K + S ++ C+VVG+F+ +LS I + +DK G I+ +L+ G+L K
Sbjct: 1 MEFSVK----SGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKP 56
Query: 516 GSTLLLRNIQKINAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFN 575
G TLLL ++ + ++RILL+ G K++++ E + ++IQ +N + G+ + L
Sbjct: 57 GQTLLLHHVPNVLSERILLIGCG-KERELDERQYKQVIQKTINTLNDTGSMEAVCFLTEL 115
Query: 576 KIEKYNLSCLIIRTIIIISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYI-DGKNAII 634
++ N + + + + LY D K+ K + ++K++F + + + G+ AI
Sbjct: 116 HVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQ 175
Query: 635 YG 636
+G
Sbjct: 176 HG 177
Score = 71.8 bits (175), Expect = 5e-15
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 2 SLKTDCLVVGIFKKNKLSSIVKDIDK--YGEITNILKSGDLNEKLGSTLLLRNIQKINAK 59
++ C+VVG+F+ +LS I + +DK G I+ +L+ G+L K G TLLL ++ + ++
Sbjct: 12 KQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSE 71
Query: 60 RILLVNLG-------------------------ASNLLLMLPFNKIEKYNLSCLIIRTII 94
RILL+ G + + L ++ N + + +
Sbjct: 72 RILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVE 131
Query: 95 IISDNLYRSDAQKSKKKPIKINIKKIIFALDEKNYI-DGKNAIIYG 139
+ LY D K+ K + ++K++F + + + G+ AI +G
Sbjct: 132 TAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHG 177
>d1lama2 c.50.1.1 (A:1-159) Leucine aminopeptidase (Aminopeptidase
A), N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 159
Score = 61.7 bits (149), Expect = 1e-11
Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 11/144 (7%)
Query: 476 TDCLVVGIFKKN------KLSSIVKDIDKY--GEITNILKSGDLNEKLGSTLLLRNIQKI 527
T LV+GI+ K + +S ++ +K G++ IL K G T + +
Sbjct: 1 TKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGLHE- 59
Query: 528 NAKRILLVNLGDKKKKIKESNFIKIIQSIMNVFCNIGASNLLLMLPFNKIEKYNLSCLII 587
+ +++V LG K I E + + G + + + + +
Sbjct: 60 DFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAVAAGCRQIQDLEIPSV--EVDPCGDAQ 117
Query: 588 RTIIIISDNLYRSDAQKSKKKPIK 611
LY D K K+K +
Sbjct: 118 AAAEGAVLGLYEYDDLKQKRKVVV 141
Score = 52.1 bits (124), Expect = 2e-08
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 41/146 (28%)
Query: 5 TDCLVVGIFKKN------KLSSIVKDIDKY--GEITNILKSGDLNEKLGSTLLLRNIQKI 56
T LV+GI+ K + +S ++ +K G++ IL K G T + +
Sbjct: 1 TKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGLHE- 59
Query: 57 NAKRILLVNLGASNLLLMLPFNKIEKYNLSCLIIR------------------------- 91
+ +++V LG ++ E ++ IR
Sbjct: 60 DFPSVVVVGLGKKTAG----IDEQENWHEGKENIRAAVAAGCRQIQDLEIPSVEVDPCGD 115
Query: 92 ---TIIIISDNLYRSDAQKSKKKPIK 114
LY D K K+K +
Sbjct: 116 AQAAAEGAVLGLYEYDDLKQKRKVVV 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.381
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,475,888
Number of extensions: 169856
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 25
Length of query: 963
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 869
Effective length of database: 1,116,976
Effective search space: 970652144
Effective search space used: 970652144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)