Query psy3775
Match_columns 440
No_of_seqs 284 out of 1151
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 16:59:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15389 fumarate hydratase; P 100.0 6E-156 1E-160 1220.8 48.4 428 1-440 76-523 (536)
2 PRK15392 putative fumarate hyd 100.0 5E-155 1E-159 1209.0 48.3 430 1-440 76-523 (550)
3 PTZ00226 fumarate hydratase; P 100.0 1E-154 2E-159 1214.0 47.7 428 1-440 106-554 (570)
4 PLN00133 class I-fumerate hydr 100.0 4E-154 8E-159 1205.5 47.9 428 1-440 113-560 (576)
5 PRK15390 fumarate hydratase Fu 100.0 6E-154 1E-158 1203.6 46.7 427 1-440 77-524 (548)
6 PRK15391 fumarate hydratase Fu 100.0 2E-152 3E-157 1193.2 46.9 432 1-440 77-524 (548)
7 PRK08230 tartrate dehydratase 100.0 4.8E-96 1E-100 723.8 27.9 247 1-259 39-292 (299)
8 PRK06246 fumarate hydratase; P 100.0 1.1E-95 2E-100 718.4 26.8 240 1-250 38-280 (280)
9 TIGR00722 ttdA_fumA_fumB hydro 100.0 5.6E-95 1.2E-99 711.3 27.0 238 1-250 30-273 (273)
10 PF05681 Fumerase: Fumarate hy 100.0 3.3E-94 7.1E-99 706.4 26.5 239 1-250 30-271 (271)
11 COG1951 TtdA Tartrate dehydrat 100.0 3.5E-93 7.7E-98 699.3 27.2 256 1-266 39-297 (297)
12 PF05683 Fumerase_C: Fumarase 100.0 4.6E-70 9.9E-75 514.7 12.8 187 253-440 2-189 (205)
13 PRK06842 fumarate hydratase; P 100.0 3.7E-67 7.9E-72 488.3 19.4 160 279-440 3-162 (185)
14 COG1838 FumA Tartrate dehydrat 100.0 3E-65 6.4E-70 471.2 17.0 160 281-440 3-162 (184)
15 PRK06043 fumarate hydratase; P 100.0 2.7E-64 5.9E-69 471.0 18.7 159 279-440 3-165 (192)
16 PRK08228 L(+)-tartrate dehydra 100.0 7.9E-64 1.7E-68 471.3 18.9 158 279-440 4-167 (204)
17 TIGR00723 ttdB_fumA_fumB hydro 100.0 1.6E-63 3.5E-68 458.0 17.8 152 289-440 1-155 (168)
18 PRK08395 fumarate hydratase; P 100.0 1E-59 2.2E-64 430.8 17.4 148 280-440 2-150 (162)
19 PF05165 GGDN: GGDN family; I 76.3 2.5 5.4E-05 42.2 3.3 26 150-175 207-234 (246)
20 PRK02240 GTP cyclohydrolase II 60.8 6.3 0.00014 39.6 2.5 24 152-175 217-242 (254)
21 PF01052 SpoA: Surface present 42.4 10 0.00022 30.3 0.5 38 285-339 20-57 (77)
22 COG2429 Archaeal GTP cyclohydr 40.9 45 0.00099 33.3 4.8 26 150-175 211-238 (250)
23 PF02540 NAD_synthase: NAD syn 39.8 65 0.0014 31.7 5.8 38 130-172 3-42 (242)
24 PRK06033 hypothetical protein; 36.8 30 0.00066 28.9 2.5 41 285-342 19-59 (83)
25 COG5204 SPT4 Transcription elo 34.9 36 0.00078 29.7 2.7 46 350-401 56-106 (112)
26 PRK07106 5-aminoimidazole-4-ca 34.9 41 0.00089 35.9 3.6 41 362-403 337-384 (390)
27 PRK05698 fliN flagellar motor 33.5 54 0.0012 30.8 3.8 43 284-343 90-132 (155)
28 PF06995 Phage_P2_GpU: Phage P 32.0 63 0.0014 28.2 3.9 35 298-332 43-80 (121)
29 PF14306 PUA_2: PUA-like domai 28.9 18 0.0004 33.7 -0.0 24 281-305 81-104 (160)
30 PRK08433 flagellar motor switc 28.9 76 0.0017 28.1 3.8 43 284-343 43-85 (111)
31 PF12857 TOBE_3: TOBE-like dom 27.6 84 0.0018 24.0 3.5 25 277-303 32-56 (58)
32 PF02839 CBM_5_12: Carbohydrat 27.3 32 0.0007 24.3 1.0 18 293-310 9-26 (41)
33 COG1577 ERG12 Mevalonate kinas 27.1 2.9E+02 0.0063 28.5 8.2 110 96-225 32-150 (307)
34 PF06191 DUF995: Protein of un 26.8 36 0.00078 31.5 1.5 14 288-301 132-145 (145)
35 TIGR02480 fliN flagellar motor 26.6 47 0.001 26.9 2.0 41 285-342 20-60 (77)
36 PRK06666 fliM flagellar motor 26.5 63 0.0014 33.0 3.3 42 285-343 270-311 (337)
37 cd04496 SSB_OBF SSB_OBF: A sub 26.3 65 0.0014 26.1 2.8 21 287-307 55-75 (100)
38 PF00498 FHA: FHA domain; Int 26.0 23 0.0005 27.0 0.1 50 241-302 18-67 (68)
39 PRK07963 fliN flagellar motor 25.5 92 0.002 28.6 3.9 42 285-343 72-113 (137)
40 PRK14175 bifunctional 5,10-met 25.1 2.1E+02 0.0046 29.2 6.8 73 130-206 13-87 (286)
41 PRK11507 ribosome-associated p 25.0 58 0.0013 26.7 2.2 20 289-308 48-67 (70)
42 PRK14193 bifunctional 5,10-met 25.0 2.2E+02 0.0048 29.2 6.8 76 130-209 13-90 (284)
43 PRK02240 GTP cyclohydrolase II 24.9 66 0.0014 32.5 3.0 40 133-177 69-109 (254)
44 TIGR00253 RNA_bind_YhbY putati 24.9 71 0.0015 27.5 2.8 30 363-392 7-36 (95)
45 COG0452 Dfp Phosphopantothenoy 24.8 90 0.002 33.1 4.2 95 284-381 129-231 (392)
46 PRK14188 bifunctional 5,10-met 24.6 2E+02 0.0043 29.6 6.5 50 130-179 12-63 (296)
47 PRK14182 bifunctional 5,10-met 24.2 2.3E+02 0.005 29.0 6.8 76 130-209 11-88 (282)
48 PRK06788 flagellar motor switc 23.9 1E+02 0.0022 27.6 3.8 42 285-343 46-87 (119)
49 PF09585 Lin0512_fam: Conserve 23.9 88 0.0019 28.0 3.3 30 36-67 2-31 (113)
50 PRK14180 bifunctional 5,10-met 23.9 2.4E+02 0.0052 28.9 6.8 72 130-205 11-85 (282)
51 TIGR02058 lin0512_fam conserve 23.3 94 0.002 27.9 3.4 30 36-67 2-31 (116)
52 PRK14194 bifunctional 5,10-met 23.0 2E+02 0.0043 29.7 6.2 77 130-209 14-91 (301)
53 PRK08983 fliN flagellar motor 22.7 1.1E+02 0.0024 27.7 3.8 42 285-343 63-104 (127)
54 TIGR01397 fliM_switch flagella 22.6 84 0.0018 31.8 3.4 42 285-343 265-306 (320)
55 PF07237 DUF1428: Protein of u 22.2 1.4E+02 0.003 26.3 4.1 44 289-332 54-103 (103)
56 PRK14181 bifunctional 5,10-met 22.0 2.5E+02 0.0055 28.8 6.6 80 130-223 10-91 (287)
57 PRK00768 nadE NAD synthetase; 21.8 99 0.0021 31.3 3.6 38 130-172 23-62 (268)
58 PF01985 CRS1_YhbY: CRS1 / Yhb 21.7 73 0.0016 26.3 2.3 22 372-393 16-37 (84)
59 KOG1111|consensus 21.7 99 0.0022 33.1 3.7 155 153-324 90-272 (426)
60 PRK14178 bifunctional 5,10-met 21.3 2.6E+02 0.0056 28.6 6.5 74 130-209 10-84 (279)
61 PF03851 UvdE: UV-endonuclease 21.3 25 0.00054 35.7 -0.7 15 24-38 194-208 (275)
62 PF00970 FAD_binding_6: Oxidor 21.2 76 0.0016 25.8 2.3 18 289-306 77-94 (99)
63 PRK14166 bifunctional 5,10-met 21.1 1.1E+02 0.0024 31.2 3.9 75 130-208 11-87 (282)
64 PF11604 CusF_Ec: Copper bindi 21.0 41 0.0009 26.9 0.6 44 250-303 6-52 (70)
65 PRK10343 RNA-binding protein Y 21.0 93 0.002 26.9 2.8 30 363-392 9-38 (97)
66 cd04486 YhcR_OBF_like YhcR_OBF 20.9 86 0.0019 25.6 2.5 17 291-307 42-58 (78)
67 COG5342 Invasion protein B, in 20.8 38 0.00083 32.5 0.5 36 285-333 134-169 (181)
68 COG0473 LeuB Isocitrate/isopro 20.7 82 0.0018 33.2 2.9 24 382-405 54-77 (348)
69 PTZ00135 60S acidic ribosomal 20.6 2E+02 0.0044 29.6 5.7 32 348-382 120-151 (310)
70 cd06578 HemD Uroporphyrinogen- 20.6 3.2E+02 0.007 25.1 6.6 92 301-397 49-147 (239)
71 PRK14174 bifunctional 5,10-met 20.5 2.8E+02 0.006 28.6 6.6 75 130-208 11-88 (295)
72 PRK14167 bifunctional 5,10-met 20.5 3.1E+02 0.0068 28.3 6.9 51 130-180 12-63 (297)
73 TIGR00355 purH phosphoribosyla 20.4 1.1E+02 0.0024 33.9 3.8 30 367-396 468-499 (511)
74 PF13101 DUF3945: Protein of u 20.2 64 0.0014 25.1 1.5 21 285-305 34-54 (59)
75 PRK14170 bifunctional 5,10-met 20.1 2.5E+02 0.0054 28.8 6.1 76 130-209 12-89 (284)
No 1
>PRK15389 fumarate hydratase; Provisional
Probab=100.00 E-value=6.1e-156 Score=1220.80 Aligned_cols=428 Identities=31% Similarity=0.483 Sum_probs=408.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
+|+|++||++|++||+|++||++.++|+|||||+++||+++|++|+ .| ++|++||++|||+||+ ++|||+|+|+
T Consensus 76 ~E~s~~ak~vl~~ileN~~iA~~~~~P~CQDTG~~~vfv~iG~~v~-~g--~~l~~aI~eGV~~ay~--~~pLR~svV~- 149 (536)
T PRK15389 76 PEASDNDKFVALDLLKNANIAAGGVLPMCQDTGTAIIMGKKGQRVW-TG--GDDEEALSRGVYDTYT--ELNLRYSQNA- 149 (536)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCCC-CC--chHHHHHHHHHHHHhc--cCCcchhhcC-
Confidence 4889999999999999999999999999999999999999999999 54 4799999999999999 8999999995
Q ss_pred CC--cCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCcccccccccCCc----hhHHHHHHHHhhhcCCCCCCCceeE
Q psy3775 81 PH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPS----DSLVDWIMKTVPTMGAGWCPPGILG 154 (440)
Q Consensus 81 pl--~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~ml~P~----~~v~~fv~e~V~~aG~~~CPP~~vG 154 (440)
|+ |+|+||+||||++||+++|+||+++|+|+||||||||||+++|++|+ +||++||+|+|.++|+|||||++||
T Consensus 150 pl~~~~r~Nt~dNtpa~I~~~~v~gD~l~I~v~~KGgGSEN~s~l~ml~pa~L~p~gI~~fVle~V~~aG~~~CPP~iVG 229 (536)
T PRK15389 150 PLDMYEEKNTGTNLPAQIDIYATEGDEYKFLFMAKGGGSANKTFLYQETKALLNPDRLLAFLVEKMRTLGTAACPPYHLA 229 (536)
T ss_pred CCCcccccCCCCCcCcEEEEEEeCCCEEEEEEEecCCCccchhheeecccccCCHHHHHHHHHHHHHHcCCCCCCCceEE
Confidence 54 49999999999999999999999999999999999999999995555 5999999999999999999999999
Q ss_pred EEEcCC-HHHHHHHHHHHhcccCcccchhcc----CCCh---hHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecC
Q psy3775 155 IGIGGT-PEKAMLMAKKVLMQDINMNSIIKN----GPKN---KIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYP 226 (440)
Q Consensus 155 VGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~----~~~~---~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p 226 (440)
|||||| +|+|++|||+||+|++| ++ ||+| ++|+||+||||+||+|||||| |||+||||+|||+++|
T Consensus 230 VGIGGt~~e~aa~LAK~AllR~~~-----~~~~~~~~~p~~~~~a~lE~eLle~IN~lGIGp~-lGG~tTaL~V~Ie~~p 303 (536)
T PRK15389 230 IVIGGTSAEANLKTVKLASAKYLD-----ALPTEGNEHGHAFRDLELEQEVLKLTQKLGIGAQ-FGGKYFCHDVRVIRLP 303 (536)
T ss_pred EEeCCCHHHHHHHHHHHHhhCccC-----CccccCCCcccchHHHHHHHHHHHHHHhhCcCcc-cCCCeEEEEEEEeecC
Confidence 999999 99999999999999999 77 7778 999999999999999999999 9999999999999999
Q ss_pred cccccCcEEEeecccccceeEEEEeCCCcee--cCCCCCCCCcccccccCCCceEEEEcC-CCCH--HHHhcCCCCCEEE
Q psy3775 227 THAASKPVAIIPNCAATRHGHIILNGSGPVF--MKPPSLSNWPKIKFTTNNKKFHYVNLN-TLTK--KEVSSWRSGEILL 301 (440)
Q Consensus 227 ~H~As~PVaV~~~C~a~R~~~~~i~~~g~~~--l~~~~~~~~p~~~~~~~~~~~~~i~l~-p~~~--e~v~~L~vGD~V~ 301 (440)
||+||+|||||+||||+||++++|++||++. |+++|.++||+++++..+.+.++|+|+ |+++ +++++|++||+||
T Consensus 304 ~H~AslPVAVni~C~a~R~~~~~i~~dg~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~L~tPl~~~~~~i~~L~vGD~V~ 383 (536)
T PRK15389 304 RHGASCPVGIGVSCSADRNIKAKITRDGIFLEQLETNPARYLPEVLREKLEGEVVKIDLNRPMAEILAELSKYPVKTRLS 383 (536)
T ss_pred CcccCCceEEEcCchhhcCceEEECCCcceeeccCCCChHhChhhhhhccCCceEEEEecCCCchhHHHHhhCCCCCEEE
Confidence 9999999999999999999999999999997 999999999999987653335555552 8987 7999999999999
Q ss_pred EeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeeccccccccchhhHHHHHHHhCceEEEecc
Q psy3775 302 LNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKA 381 (440)
Q Consensus 302 LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS~RMd~y~~~~l~~~Gv~~~IGKG 381 (440)
|||+|||+||+||+||++++++|++||+||+|++||||||+++++|+.++|+|||||+|||+|+|.|++++|+++|||||
T Consensus 384 LsG~i~taRDaaHkrl~e~~~~G~~lP~dl~g~~Iyh~GP~~~~~g~~igs~GPTTS~RMd~~~~~ll~~~G~~~~IGKG 463 (536)
T PRK15389 384 LTGTIIVARDIAHAKLKERLDAGEGLPQYLKDHPVYYAGPAKTPEGYASGSFGPTTAGRMDSYVDLFQAAGGSMVMLAKG 463 (536)
T ss_pred EEEEEEEEehHHHHHHHHHHhcCCCCCcCcCCCEEEEecCCCCCCCceeeeeCCchHHHhhhhHHHHHHhcCcEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred cCCHHHHHHHHhcCeEEEEccchHHHHHH-hhceeeeeecccCCCceeEEEEEEeccCCC
Q psy3775 382 ERSDKIIKLIKKQKIAYLVAVGGAAYLIS-KAIKSAKIICFEDLGMEAIYEFNVENMPVT 440 (440)
Q Consensus 382 ~~~~~~~~a~~~~gavYl~~~GGaaal~a-~~Ik~v~~v~~~dLG~EAi~~leVe~fP~~ 440 (440)
+||+++++||++||+|||+++|||||+++ ++||++++|+|+||||||+|+|+|+|||+|
T Consensus 464 ~~~~~~~ea~k~~gavYl~~~GG~aA~l~a~~Ik~v~~V~~~dLG~EAi~~leV~dfP~i 523 (536)
T PRK15389 464 NRSQQVTDACKKHGGFYLGSIGGPAARLAQDCIKKVEVLEYPELGMEAVWKIEVEDFPAF 523 (536)
T ss_pred CCCHHHHHHHHHcCEEEEEcCcHHHHHHHHhhccEEEEeeccccCccEEEEEEEecCCeE
Confidence 99999999999999999999999999776 999999999999999999999999999985
No 2
>PRK15392 putative fumarate hydratase; Provisional
Probab=100.00 E-value=4.9e-155 Score=1209.02 Aligned_cols=430 Identities=29% Similarity=0.491 Sum_probs=413.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
.|.|+++|++|.+||+|++||++.++|+|||||+++||+++|++| +.| +++++||++||++||+ ++|||+|+|+
T Consensus 76 ~E~s~~~k~vl~~iL~Na~iA~~~~lP~CQDTG~aivfvk~G~~V-~~g--~~~~eai~eGV~~ay~--~~~LR~S~V~- 149 (550)
T PRK15392 76 PQASSNDKYVALQLLRNAEVSAKGVLPNCQDTGTATIVASKGQQI-WTG--GNDAEALSKGIYSTFQ--ENNLRFSQNA- 149 (550)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEECCce-ecC--ccHHHHHHHHHHHHhc--cCCCchhhcc-
Confidence 489999999999999999999999999999999999999999999 564 4799999999999999 8999999995
Q ss_pred CC--cCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCcccccccc-----cCCchhHHHHHHHHhhhcCCCCCCCcee
Q psy3775 81 PH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAM-----LNPSDSLVDWIMKTVPTMGAGWCPPGIL 153 (440)
Q Consensus 81 pl--~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~m-----l~P~~~v~~fv~e~V~~aG~~~CPP~~v 153 (440)
|+ |+|+|||||||++||+++++||+++|+|+||||||||+|+++| |+| ++|++||+|+|+++|++||||++|
T Consensus 150 pl~~~~r~NTgdNtpa~I~~~~v~Gd~~~i~~~~KGgGSeN~s~l~~~tk~~L~P-egi~~FVle~V~~aG~~aCPP~~v 228 (550)
T PRK15392 150 PLDMYTEVNTQTNLPAQIDISAVAGDEYHFLCVNKGGGSANKAALYQETKSLLQP-EKLTAFLIEKMKSLGTAACPPYHI 228 (550)
T ss_pred CCCccccccCCCCcccEEEEEEcCCCEEEEEEEecCCCcccHHHHHhhccccCCH-HHHHHHHHHHHHhCCCCCCCCcEE
Confidence 54 4999999999999999999999999999999999999999996 888 899999999999999999999999
Q ss_pred EEEEcC-CHHHHHHHHHHHhcccCcccchhccCCC----hhHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecCcc
Q psy3775 154 GIGIGG-TPEKAMLMAKKVLMQDINMNSIIKNGPK----NKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTH 228 (440)
Q Consensus 154 GVGIGG-t~d~a~~LaK~Al~r~~~~~~~~~~~~~----~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H 228 (440)
|||||| |+|+|++|||+||+|++| .++++|++ |++++||+|||+++|+|||||| |||+||||||||+++|||
T Consensus 229 GVGIGG~s~e~a~~laK~Al~R~~D--~l~~~~~~~g~~~r~aeLE~eLle~iN~lGIGpq-~GGk~taldV~Ie~~p~H 305 (550)
T PRK15392 229 AFVVGGLSADQTLKVAKLASTKYYD--NLPTSGNEQGQAFRDIELEKVLLEASQQFGIGAQ-FGGKYFAHDIRVIRLPRH 305 (550)
T ss_pred EEEECCCCHHHHHHHHHHHhhCCcc--cccCCCcccCCChHHHHHHHHHHHHHhhhCcCcc-cCCceEEEEEEEeEcccc
Confidence 999999 999999999999999777 77799999 9999999999999999999999 999999999999999999
Q ss_pred cccCcEEEeecccccceeEEEEeCCCce--ecCCCCCCCCcccccccCCCceEEEEcC-CCCH--HHHhcCCCCCEEEEe
Q psy3775 229 AASKPVAIIPNCAATRHGHIILNGSGPV--FMKPPSLSNWPKIKFTTNNKKFHYVNLN-TLTK--KEVSSWRSGEILLLN 303 (440)
Q Consensus 229 ~As~PVaV~~~C~a~R~~~~~i~~~g~~--~l~~~~~~~~p~~~~~~~~~~~~~i~l~-p~~~--e~v~~L~vGD~V~Ls 303 (440)
+||||||||+||||+||++++|++||.| +|+.+|.+|+|++.++..+++.++|+|+ |+++ +++++|++||+|+||
T Consensus 306 ~AslPVaV~v~C~A~R~~~~~i~~dG~~~e~l~~~p~~~~p~~~~~~~~~~~~~i~L~~Pl~~~~~~l~~l~vGd~v~Ls 385 (550)
T PRK15392 306 GGSCPIAMALSCSADRNIKAKINKHGIWLEKLEHNPGQYIPASLREENHAQHVQLDLNRPLRDVMQDLARLPVGTRVSLS 385 (550)
T ss_pred ccCCceEEEcCchhhcceeEEECCCcccchhhhhChhhcCcchhhhccCCceEEEEecCCCChhHHHHhcCCCCCEEEEE
Confidence 9999999999999999999999999998 9999999999999977655557777774 8998 999999999999999
Q ss_pred EEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeeccccccccchhhHHHHHHHhCceEEEecccC
Q psy3775 304 GKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAER 383 (440)
Q Consensus 304 G~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS~RMd~y~~~~l~~~Gv~~~IGKG~~ 383 (440)
|+||||||+||+||+|++++|++||+||+|++||||||+++++|+++||+|||||+|||+|++.|+++.|+++|||||+|
T Consensus 386 G~i~taRD~AH~rl~e~l~~Ge~lP~dlkg~~IyyaGP~~~~~g~~~gs~GPTTS~RMD~y~~~l~~~~G~~~~IGKG~r 465 (550)
T PRK15392 386 GPIVVARDIAHAKIKARLDSGEPMPEYLKHHIVYYAGPAKTPENMACGSLGPTTGGRMDGYVDTFQAAGGSLVMLSKGNR 465 (550)
T ss_pred EEEEEEhHHHHHHHHHHHhcCCCCCcCcCCCEEEEecCCCCCCCCEeEEECCCcHHhhhhhHHHHHHhCCcEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CHHHHHHHHhcCeEEEEccchHHHHHHh-hceeeeeecccCCCceeEEEEEEeccCCC
Q psy3775 384 SDKIIKLIKKQKIAYLVAVGGAAYLISK-AIKSAKIICFEDLGMEAIYEFNVENMPVT 440 (440)
Q Consensus 384 ~~~~~~a~~~~gavYl~~~GGaaal~a~-~Ik~v~~v~~~dLG~EAi~~leVe~fP~~ 440 (440)
|++|++|||+||+|||+++||||||+|+ +||++++|+|+||||||||+|||||||+|
T Consensus 466 s~~v~~A~kk~g~vYl~~iGG~AAlla~~~Ik~v~~v~~~eLGmEAiw~leVedFP~~ 523 (550)
T PRK15392 466 SQQVTDACHKHGGFNLGSIGGAAALLAQEYVKSLRCLEYPELGMEAVWMMEVENLPAF 523 (550)
T ss_pred CHHHHHHHHHcCEEEEEcCchHHHHHHHhceeEEEEEeccccCccEEEEEEEecCCEE
Confidence 9999999999999999999999999996 79999999999999999999999999985
No 3
>PTZ00226 fumarate hydratase; Provisional
Probab=100.00 E-value=9.6e-155 Score=1213.97 Aligned_cols=428 Identities=32% Similarity=0.475 Sum_probs=411.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
.|+|+++|++|.+||+|++||++.++|+|||||+++||+|+|++|++.| ++++||++||++||+ ++|||+|+|++
T Consensus 106 ~E~s~~~k~vl~~iL~Na~iA~~~~lP~CQDTG~aivfvk~G~~v~~~g---~l~eai~eGV~~ay~--~~~LR~S~v~p 180 (570)
T PTZ00226 106 PEASDNDRFVAMTLLKNACIAAGRVLPGCQDTGTAIVLGKRGELIWTGG---EDEKALSKGVYNAYT--NRNLRYSQLAP 180 (570)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCccCCc---hHHHHHHHHHHHHhc--cCCcchhhcCC
Confidence 4789999999999999999999999999999999999999999999873 699999999999999 89999999976
Q ss_pred C-CcCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCccccccc-----ccCCchhHHHHHHHHhhhcCCCCCCCceeE
Q psy3775 81 P-HFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFA-----MLNPSDSLVDWIMKTVPTMGAGWCPPGILG 154 (440)
Q Consensus 81 p-l~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~-----ml~P~~~v~~fv~e~V~~aG~~~CPP~~vG 154 (440)
| ||+|+||+||||++||+++++||+++|+|+||||||||+|+++ ||+| ++|++||+|+|+++|++||||++||
T Consensus 181 l~m~~r~NTgdNtPa~I~~~~v~Gd~~~i~~~~KGGGSeNks~l~q~tk~mL~P-~~i~~fVle~V~~~G~~aCPP~~vG 259 (570)
T PTZ00226 181 LDMFDEKNTGCNLPAQIDLYATPGNEYEFLFIAKGGGSANKTFLYQQTKSLLNP-KSLRKFLEEKIKTIGTSACPPYHLA 259 (570)
T ss_pred CccccccCCCCCcceEEEEEecCCCEEEEEEEecCCCcccHHHHHhhcccccCH-HHHHHHHHHHHHhcCCCCCCCceEE
Confidence 5 3799999999999999999999999999999999999999999 9999 7999999999999999999999999
Q ss_pred EEEcCC-HHHHHHHHHHHhcccCcccchhccC--CChh-----HHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecC
Q psy3775 155 IGIGGT-PEKAMLMAKKVLMQDINMNSIIKNG--PKNK-----IEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYP 226 (440)
Q Consensus 155 VGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~~--~~~~-----~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p 226 (440)
|||||| +|+|++|||+|++|++| +.| ++|. +++||+||||++|+|||||| |||++|||||||+++|
T Consensus 260 VGIGGts~E~a~~laK~Al~r~ld-----~~~~~~~~~~~~~r~a~LE~eLle~iN~lGIGpq-fGGk~taldV~I~~~p 333 (570)
T PTZ00226 260 VVIGGLSAEMTLKTVKLASCRYYD-----SLPTSGDEYGRAFRDLEWEEIILEKTQNIGIGAQ-FGGKYFAHDVRVIRLP 333 (570)
T ss_pred EEECCCHHHHHHHHHHHHhhCccc-----ccCCCCCccccchHHHHHHHHHHHHHhhhCcCcc-cCCCcEEEEEEEeecC
Confidence 999999 99999999999999999 555 5564 99999999999999999999 9999999999999999
Q ss_pred cccccCcEEEeecccccceeEEEEeCCCce--ecCCCCCCCCcccccccCCC-ceEEEEcC-CCCH--HHHhcCCCCCEE
Q psy3775 227 THAASKPVAIIPNCAATRHGHIILNGSGPV--FMKPPSLSNWPKIKFTTNNK-KFHYVNLN-TLTK--KEVSSWRSGEIL 300 (440)
Q Consensus 227 ~H~As~PVaV~~~C~a~R~~~~~i~~~g~~--~l~~~~~~~~p~~~~~~~~~-~~~~i~l~-p~~~--e~v~~L~vGD~V 300 (440)
||+||||||||+||||+||++++|++||.| +|+++|++|||+++.+..+. +.++++|+ |+++ +++++|+|||+|
T Consensus 334 rH~ASlPVaV~v~C~A~R~~~~~I~~dG~~~e~l~~~p~~~~p~~~~~~~~~~~~~~~~L~~Pl~~~~e~l~~l~vGd~v 413 (570)
T PTZ00226 334 RHGASCPIGIGVSCSADRQILAKINKDGVYLEQLEHDPAQYLPDITEDDLSKTPVVKIDLNQPMEEILKQLSKYPVKTRL 413 (570)
T ss_pred CcccCCceEEEcCchhhcCceEEECCCcceeeccCCCchHhChhhhhcccCCCceEEEEecCCCchhHHHHhcCCCCCEE
Confidence 999999999999999999999999999999 99999999999998766544 56777764 8987 999999999999
Q ss_pred EEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeeccccccccchhhHHHHHHHhCceEEEec
Q psy3775 301 LLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGK 380 (440)
Q Consensus 301 ~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS~RMd~y~~~~l~~~Gv~~~IGK 380 (440)
+|||+||||||+||+||+|++++|++||+||+|++||||||+++++|+++||+|||||+|||+|++.|+++.|+++||||
T Consensus 414 ~LsG~i~taRD~AH~rl~e~l~~Ge~lP~dlkg~~IyyaGP~~~~~g~~~gs~GPTTS~RMd~y~~~l~~~~G~~~~IGK 493 (570)
T PTZ00226 414 SLTGTLIVARDIAHAKIVEMLENGEPLPEYMKNHPIYYAGPAKTPDGYASGSFGPTTAGRMDSYVDLFMENGGSFITLAK 493 (570)
T ss_pred EEEEEEEEEehHHHHHHHHHHhcCCCCCcCCCCCEEEEecCCCCCCCCeeeeECCCcHHhhhhhHHHHHHhCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred ccCCHHHHHHHHhcCeEEEEccchHHHHHH-hhceeeeeecccCCCceeEEEEEEeccCCC
Q psy3775 381 AERSDKIIKLIKKQKIAYLVAVGGAAYLIS-KAIKSAKIICFEDLGMEAIYEFNVENMPVT 440 (440)
Q Consensus 381 G~~~~~~~~a~~~~gavYl~~~GGaaal~a-~~Ik~v~~v~~~dLG~EAi~~leVe~fP~~ 440 (440)
|+||++|++|||+||+|||+++||||||++ ++||++++|+|+||||||+|+|||||||+|
T Consensus 494 G~rs~~v~~a~kk~g~vYl~aiGG~aAlla~~~Ik~v~~v~~~eLGmEAi~~leVedFP~~ 554 (570)
T PTZ00226 494 GNRSKAVTNACKKYGGFYLGSIGGPAAILAKDNIKKVEVLDFPELGMEAVWKIEVENFPAF 554 (570)
T ss_pred CCCCHHHHHHHHHcCEEEEEcCChHHHHHHHhheeeEEEEeccccCccEEEEEEEecCCEE
Confidence 999999999999999999999999999996 999999999999999999999999999985
No 4
>PLN00133 class I-fumerate hydratase; Provisional
Probab=100.00 E-value=3.8e-154 Score=1205.50 Aligned_cols=428 Identities=30% Similarity=0.447 Sum_probs=412.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
.|+|+++|++|.+||+|++||++.++|+|||||+++||+++|++|++. ++++++|++||++||+ ++|||+|+|+|
T Consensus 113 ~E~s~~~k~vl~~iL~Na~iAa~~~lP~CQDTG~aivfvk~G~~V~~~---g~leeai~eGV~~ay~--~~~LR~S~V~p 187 (576)
T PLN00133 113 PEASDNDRFVALELLKNANIAAGRVLPGCQDTGTAIVMGKRGQRVLTD---GEDEEHLSRGVYDAYT--DTNLRYSQVAP 187 (576)
T ss_pred cccCHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEeCCCcCcC---chHHHHHHHHHHHHhc--cCCCcccccCC
Confidence 489999999999999999999999999999999999999999999986 4699999999999999 89999999976
Q ss_pred C-CcCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCccccccc-----ccCCchhHHHHHHHHhhhcCCCCCCCceeE
Q psy3775 81 P-HFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFA-----MLNPSDSLVDWIMKTVPTMGAGWCPPGILG 154 (440)
Q Consensus 81 p-l~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~-----ml~P~~~v~~fv~e~V~~aG~~~CPP~~vG 154 (440)
| ||+|+|||||||++||+++++||+++|+|+||||||||+|+++ ||+| ++|++||+|+|.++|++||||++||
T Consensus 188 ~~m~~r~NTgdNtPa~I~~~~v~Gd~~~i~~~~KGGGSeN~s~l~q~tk~mL~P-~gi~~FVle~V~~aG~~aCPP~~vG 266 (576)
T PLN00133 188 LDMFEEKNTGTNLPAQIDLYAAKGDEYHFQFIAKGGGSANKTFLYQQTKALLNE-GSLEAFLEEKIKTIGTSACPPYHLA 266 (576)
T ss_pred CcccceecCCCCcceEEEEEEcCCCEEEEEEEecCCCccCHHHHHhhhhhcCCH-HHHHHHHHHHHHhcCCCCCCCceEE
Confidence 5 4899999999999999999999999999999999999999999 9999 6999999999999999999999999
Q ss_pred EEEcCC-HHHHHHHHHHHhcccCcccchhccC--CChh-----HHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecC
Q psy3775 155 IGIGGT-PEKAMLMAKKVLMQDINMNSIIKNG--PKNK-----IEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYP 226 (440)
Q Consensus 155 VGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~~--~~~~-----~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p 226 (440)
|||||| +|+|++|||+|++|++| +.| ++|+ +++||+|||+++|+|||||| |||+||||||||+++|
T Consensus 267 VGIGGtsaE~a~~laK~A~~r~ld-----~~~~~~~~~~~~~r~aelE~eLle~iN~lGIGpq-fGGk~taldV~Ie~~p 340 (576)
T PLN00133 267 IVIGGLSAEQNLKTVKLASTRYYD-----TLPTSGNALGRAFRDLEWEEKILKMTRGLGIGAQ-FGGKYFCHDVRVIRLP 340 (576)
T ss_pred EEECCChHHHHHHHHHHHhhCccc-----cccCCCCccccchHHHHHHHHHHHHHhhcCcCcc-cCCceEEEEEEEeEcc
Confidence 999997 99999999999999999 555 5555 88999999999999999999 9999999999999999
Q ss_pred cccccCcEEEeecccccceeEEEEeCCCce--ecCCCCCCCCcccccccCCCceEEEEcC-CCCH--HHHhcCCCCCEEE
Q psy3775 227 THAASKPVAIIPNCAATRHGHIILNGSGPV--FMKPPSLSNWPKIKFTTNNKKFHYVNLN-TLTK--KEVSSWRSGEILL 301 (440)
Q Consensus 227 ~H~As~PVaV~~~C~a~R~~~~~i~~~g~~--~l~~~~~~~~p~~~~~~~~~~~~~i~l~-p~~~--e~v~~L~vGD~V~ 301 (440)
||+||||||||+||||+||++++|++||.| +|+++|.+|||+++++..+++.++|+|+ |+++ +++++|++||+||
T Consensus 341 rH~AslPVaV~v~C~A~R~~~~~I~~dG~~~e~l~~~p~~~~p~~~~~~~~~~~~~idl~~p~~~~~~~l~~l~vGd~V~ 420 (576)
T PLN00133 341 RHGASCPVGIGVSCSADRQALGKITKDGVFLEALETDPSKYLPDVTEDSLSDDVVKVDLNRPMSEIRETLSAHPVRTRLS 420 (576)
T ss_pred ccccCCceEEEccchhhcceeEEECCCcccccccCCCChhhChhhhhhccCCCeEEEECCCCcchHHHHHhhCCCCCEEE
Confidence 999999999999999999999999999999 9999999999999987655568899985 7886 9999999999999
Q ss_pred EeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeeccccccccchhhHHHHHHHhCceEEEecc
Q psy3775 302 LNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKA 381 (440)
Q Consensus 302 LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS~RMd~y~~~~l~~~Gv~~~IGKG 381 (440)
|||+||||||+||+||+|++++|++||+||+|++||||||+++++|+.+||+|||||+|||+|++.|+++.|+++|||||
T Consensus 421 LsG~I~taRDaAH~rl~e~l~~Ge~LP~dlkg~~IyyaGP~~~~~g~~~gs~GPTTS~RMD~y~~~ll~~~G~~~~IGKG 500 (576)
T PLN00133 421 LTGTLVVARDIAHAKLLERLEAGEGLPQYAKDHIIYYAGPAKTPEGYASGSFGPTTAGRMDSYVDRFMAAGGSFVTLAKG 500 (576)
T ss_pred EEEEEEEEeHHHHHHHHHHHhcCCCCCcCcCCCEEEEeCCCCCCCCCceeeeCCChHHHhhhhHHHHHHhcCcEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred cCCHHHHHHHHhcCeEEEEccchHHHHHH-hhceeeeeecccCCCceeEEEEEEeccCCC
Q psy3775 382 ERSDKIIKLIKKQKIAYLVAVGGAAYLIS-KAIKSAKIICFEDLGMEAIYEFNVENMPVT 440 (440)
Q Consensus 382 ~~~~~~~~a~~~~gavYl~~~GGaaal~a-~~Ik~v~~v~~~dLG~EAi~~leVe~fP~~ 440 (440)
+||+++++|||+||+|||+++|||||+++ ++||++++|+|+||||||+|++||||||++
T Consensus 501 ~rs~~v~eA~kk~gavYL~aiGGaaA~La~~~Ik~v~~V~~~dLGmEAiw~leVedFP~~ 560 (576)
T PLN00133 501 NRSAQVTNACKKHGGFYLGSIGGPAAILAQNCIKKVEVLENPELGMEAVWKIEVEDFPAF 560 (576)
T ss_pred CCCHHHHHHHHHcCEEEEEcCchHHHHHHHhhccEEEEEeccccCccEEEEEEEecCCeE
Confidence 99999999999999999999999999776 999999999999999999999999999985
No 5
>PRK15390 fumarate hydratase FumA; Provisional
Probab=100.00 E-value=6.2e-154 Score=1203.63 Aligned_cols=427 Identities=31% Similarity=0.486 Sum_probs=408.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
.|+|+++|++|++||+|++||++.++|+|||||+++||+++|++|+ .| ++++++|++||++||+ +.|||+|+|+
T Consensus 77 ~E~s~~~k~vl~~lL~Na~iA~~~~~P~CQDTG~~ivfv~~G~~v~-~g--~~~~eai~eGV~~ay~--~~~LR~S~v~- 150 (548)
T PRK15390 77 PEASENDKYVALQFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVW-TG--GGDEAALARGVYNTYI--EDNLRYSQNA- 150 (548)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEEEECCCCC-CC--chHHHHHHHHHHHHhc--cCCcchhhcC-
Confidence 4899999999999999999999999999999999999999999998 54 4799999999999999 7999999995
Q ss_pred CC--cCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCccccccc-----ccCCchhHHHHHHHHhhhcCCCCCCCcee
Q psy3775 81 PH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFA-----MLNPSDSLVDWIMKTVPTMGAGWCPPGIL 153 (440)
Q Consensus 81 pl--~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~-----ml~P~~~v~~fv~e~V~~aG~~~CPP~~v 153 (440)
|+ |+|+|||||||++||+++++||+++|+|+||||||||+|+++ ||+|+ .|++||+|+|+++|+|||||++|
T Consensus 151 pl~~~~r~NTgdNtpa~I~~~~v~gd~~~i~~~~KGGGSeN~s~l~~~tk~mL~p~-~i~~FV~e~V~~~G~~aCPP~~v 229 (548)
T PRK15390 151 PLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPG-KLKNYLVEKMRTLGTAACPPYHI 229 (548)
T ss_pred CCCccccccCCCCcccEEEEEEcCCCEEEEEEEecCCCcccHHHHhhhccccCCHH-HHHHHHHHHHHhcCCCCCCCceE
Confidence 54 599999999999999999999999999999999999999997 99996 59999999999999999999999
Q ss_pred EEEEcCCHHHHH----HHHHHHhcccCcccchhcc-C---CChhHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeec
Q psy3775 154 GIGIGGTPEKAM----LMAKKVLMQDINMNSIIKN-G---PKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMY 225 (440)
Q Consensus 154 GVGIGGt~d~a~----~LaK~Al~r~~~~~~~~~~-~---~~~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~ 225 (440)
|||||||+|+|+ +|||+|++|+++ ++ | ++|++++||+|||+++|+|||||| |||++|||||||+++
T Consensus 230 GVGIGGt~~~a~~k~~kLAK~allr~l~-----t~gn~~~~~~r~a~lE~eLLe~iN~lGIGpq-fGGk~taldV~Ie~~ 303 (548)
T PRK15390 230 AFVIGGTSAETNLKTVKLASAKYYDELP-----TEGNEHGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRL 303 (548)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhccCC-----ccccccCCchHHHHHHHHHHHHHhhhCcCcc-cCCceEEEEEEEeEc
Confidence 999999999986 999999999998 55 4 899999999999999999999999 999999999999999
Q ss_pred CcccccCcEEEeecccccceeEEEEeCCCce--ecCCCCCCCCcccccccCCCceEEEEcC-CCCHH--HHhcCCCCCEE
Q psy3775 226 PTHAASKPVAIIPNCAATRHGHIILNGSGPV--FMKPPSLSNWPKIKFTTNNKKFHYVNLN-TLTKK--EVSSWRSGEIL 300 (440)
Q Consensus 226 p~H~As~PVaV~~~C~a~R~~~~~i~~~g~~--~l~~~~~~~~p~~~~~~~~~~~~~i~l~-p~~~e--~v~~L~vGD~V 300 (440)
|||+||||||||+||||+||++++|++||.| +|+++|.+|||+++.+..+.+.++|+|+ |++++ ++++|+|||+|
T Consensus 304 prH~AslPVaV~v~C~A~R~~~~~I~~dg~~~e~le~~p~~~~p~~~~~~~~~~~~~i~L~~Pl~e~~~~l~~l~vGd~V 383 (548)
T PRK15390 304 PRHGASCPVGMGVSCSADRNIKAKINRQGIWIEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRL 383 (548)
T ss_pred cccccCCceEEEcCchhhcceeEEECCCcchHHhhccCChhhchhhhhhccCCceEEEEccCCCchHHHHHhhCCCCCEE
Confidence 9999999999999999999999999999999 9999999999999877665567777774 77763 99999999999
Q ss_pred EEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeeccccccccchhhHHHHHHHhCceEEEec
Q psy3775 301 LLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGK 380 (440)
Q Consensus 301 ~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS~RMd~y~~~~l~~~Gv~~~IGK 380 (440)
+|||+||||||+||+||+|++++|++||+||+|++||||||+++++|+++||+|||||+|||+|++.|+++.|+++||||
T Consensus 384 ~LsG~I~taRD~AH~rl~e~l~~Ge~lP~dl~g~~IyyaGP~~~~~g~~~gs~GPTTS~RMd~y~~~l~~~~G~~~~IGK 463 (548)
T PRK15390 384 SLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQLQAQGGSMIMLAK 463 (548)
T ss_pred EEEEEEEEEehHHHHHHHHHHhcCCCCCcCCCCCEEEEecCCCCCCCceeeeECCCcHHHhhhhHHHHHHhCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred ccCCHHHHHHHHhcCeEEEEccchHHHHHH-hhceeeeeecccCCCceeEEEEEEeccCCC
Q psy3775 381 AERSDKIIKLIKKQKIAYLVAVGGAAYLIS-KAIKSAKIICFEDLGMEAIYEFNVENMPVT 440 (440)
Q Consensus 381 G~~~~~~~~a~~~~gavYl~~~GGaaal~a-~~Ik~v~~v~~~dLG~EAi~~leVe~fP~~ 440 (440)
|+||++|++|||+||+|||+++|||||+++ ++||++++|+|+||||||||++||||||+|
T Consensus 464 G~rs~~v~~a~k~~g~vYl~~iGG~aA~La~~~Ik~v~~v~~~dLGmEAiw~leVedFP~~ 524 (548)
T PRK15390 464 GNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPELGMEAIWKIEVEDFPAF 524 (548)
T ss_pred CCCCHHHHHHHHHcCEEEEEcCcHHHHHHHHhhccEEEEEeccccCccEEEEEEEecCCEE
Confidence 999999999999999999999999998886 999999999999999999999999999985
No 6
>PRK15391 fumarate hydratase FumB; Provisional
Probab=100.00 E-value=1.5e-152 Score=1193.15 Aligned_cols=432 Identities=30% Similarity=0.475 Sum_probs=407.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
.|+|+++|++|.+||+|++||++.++|+|||||+++||+++|++|++. ++++++|++||++||+ +.|||+|+|++
T Consensus 77 ~E~s~~~k~vl~~lL~Na~iAa~~~lP~CQDTG~aivfvk~G~~v~~~---g~~~eai~~GV~~ay~--~~~LR~S~V~p 151 (548)
T PRK15391 77 PEASENDKYVALQFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQRVWTG---GGDEEALSKGVYNTYI--EDNLRYSQNAA 151 (548)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEECCCcccC---chHHHHHHHHHHHHhc--cCCcchhhcCC
Confidence 489999999999999999999999999999999999999999999875 4699999999999999 79999999954
Q ss_pred C-CcCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCccccccc-----ccCCchhHHHHHHHHhhhcCCCCCCCceeE
Q psy3775 81 P-HFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFA-----MLNPSDSLVDWIMKTVPTMGAGWCPPGILG 154 (440)
Q Consensus 81 p-l~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~-----ml~P~~~v~~fv~e~V~~aG~~~CPP~~vG 154 (440)
. +|+|+|||||||++||+++++||+++|+|+||||||||+|+++ ||+|+ .|++||+|+|+++|+|||||++||
T Consensus 152 l~~~~r~NTgdNtpa~I~~~~v~Gd~~~i~~~~KGGGSeNks~l~~~tk~mL~p~-~i~~FV~e~V~~~G~~aCPP~~vG 230 (548)
T PRK15391 152 LDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLTPG-KLKNFLVEKMRTLGTAACPPYHIA 230 (548)
T ss_pred CCccccccCCCCcccEEEEEEcCCCEEEEEEEecCCCcccHHHHhhhccccCCHH-HHHHHHHHHHHhcCCCCCCCceEE
Confidence 2 3599999999999999999999999999999999999999997 99996 599999999999999999999999
Q ss_pred EEEcCCHHHH-HHHHHHH---hcccCcccchhccCCChhHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecCcccc
Q psy3775 155 IGIGGTPEKA-MLMAKKV---LMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAA 230 (440)
Q Consensus 155 VGIGGt~d~a-~~LaK~A---l~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H~A 230 (440)
||||||+|+| ++|||+| ++|+++. +-+..+++|++++||+|||+++|+|||||| |||+||||||||+++|||+|
T Consensus 231 VGIGGt~~~a~~~laK~A~~~llr~l~~-~~n~~g~~~r~a~LE~eLle~iN~lGIGpq-~GGk~taldV~I~~~p~H~A 308 (548)
T PRK15391 231 FVIGGTSAETNLKTVKLASAHYYDELPT-EGNEHGQAFRDVQLEQELLEEAQKLGLGAQ-FGGKYFAHDIRVIRLPRHGA 308 (548)
T ss_pred EEeCCCHHHHHHHHHHHHHHhhhcccCc-ccccCCCchHHHHHHHHHHHHHhhcCcCcc-cCCCcEEEEEEEeecCCccc
Confidence 9999999999 9999999 6668861 012244899999999999999999999999 99999999999999999999
Q ss_pred cCcEEEeecccccceeEEEEeCCCce--ecCCCCCCCCcccccccCCCceEEEEcC-CCCHH--HHhcCCCCCEEEEeEE
Q psy3775 231 SKPVAIIPNCAATRHGHIILNGSGPV--FMKPPSLSNWPKIKFTTNNKKFHYVNLN-TLTKK--EVSSWRSGEILLLNGK 305 (440)
Q Consensus 231 s~PVaV~~~C~a~R~~~~~i~~~g~~--~l~~~~~~~~p~~~~~~~~~~~~~i~l~-p~~~e--~v~~L~vGD~V~LsG~ 305 (440)
|||||||+||||+||++++|++||.| +|+++|++|||+++++..+++.++++|+ |++++ ++++|++||+|+|||+
T Consensus 309 slPVaV~v~C~A~R~~~~~i~~dG~~~e~le~~p~~~~p~~~~~~~~~~~~~i~L~~P~~e~~~~l~~l~vGd~v~LsG~ 388 (548)
T PRK15391 309 SCPVGMGVSCSADRNIKAKINREGIWIEKLEHNPGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVSTRLSLTGT 388 (548)
T ss_pred CCceEEEccchhhcceeEEECCCcceeeccCCCchHhChhhhhhccCCCeEEEEcCCCChHHHHHHhcCCCCCEEEEEEE
Confidence 99999999999999999999999999 9999999999999987665567777774 77763 8999999999999999
Q ss_pred EEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeeccccccccchhhHHHHHHHhCceEEEecccCCH
Q psy3775 306 ILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSD 385 (440)
Q Consensus 306 i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS~RMd~y~~~~l~~~Gv~~~IGKG~~~~ 385 (440)
||||||+||+||+|++++|++||+||+|++||||||+++++|+++||+|||||+|||+|++.|+++.|+++|||||+||+
T Consensus 389 I~taRD~AH~rl~e~l~~Ge~lP~dlkg~~IyyaGP~~~~~g~~~gs~GPTTS~RMD~y~~~l~~~gg~~~~IGKG~rs~ 468 (548)
T PRK15391 389 IIVGRDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDLLQSHGGSMIMLAKGNRSQ 468 (548)
T ss_pred EEEEhhHHHHHHHHHHhcCCCCCcCCCCCEEEEecCCCCCCCCeeeeECCCcHHHhhhhHHHHHHhCCcEEEEEcCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999778899999999999
Q ss_pred HHHHHHHhcCeEEEEccchHHHHHH-hhceeeeeecccCCCceeEEEEEEeccCCC
Q psy3775 386 KIIKLIKKQKIAYLVAVGGAAYLIS-KAIKSAKIICFEDLGMEAIYEFNVENMPVT 440 (440)
Q Consensus 386 ~~~~a~~~~gavYl~~~GGaaal~a-~~Ik~v~~v~~~dLG~EAi~~leVe~fP~~ 440 (440)
+|++|||+||+|||+++|||||+++ ++||++++|+|+||||||||++||||||++
T Consensus 469 ~v~~a~kk~g~vYL~aiGG~AA~La~~~Ik~v~~v~~~eLGmEAiw~~eVedFP~~ 524 (548)
T PRK15391 469 QVTDACHKHGGFYLGSIGGPAAVLAQQSIKHLECVAYPELGMEAIWKIEVEDFPAF 524 (548)
T ss_pred HHHHHHHHcCeEEEEcCcHHHHHHHHhhccEEEEEecccccccEEEEEEEecCCEE
Confidence 9999999999999999999998887 999999999999999999999999999985
No 7
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=100.00 E-value=4.8e-96 Score=723.84 Aligned_cols=247 Identities=28% Similarity=0.502 Sum_probs=240.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
+|+||+||++|++||+|++||+++++|+|||||+++||+++|++|++.| .|++||+||||+||+ ++|||+|+|+
T Consensus 39 ~E~s~~ak~~L~~ileN~~iA~~~~~PiCQDTG~~~~fv~iG~~v~~~g---~l~~aI~egVr~a~~--~~~LR~s~V~- 112 (299)
T PRK08230 39 AETSPLAKIIYDTMFENQQLAIDLNRPSCQDTGVIQFFVKVGARFPLLG---ELESILKEAVEEATV--KAPLRHNAVE- 112 (299)
T ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCcccCc---hHHHHHHHHHHHHhc--cCCCCcccCC-
Confidence 5899999999999999999999999999999999999999999999974 599999999999999 8999999995
Q ss_pred CCcCccCCCCCCce---eEEEEeeC-CCEEEEEEEecCCCCcccccccccCCc---hhHHHHHHHHhhhcCCCCCCCcee
Q psy3775 81 PHFIRKNTQDNTPA---VINMELVP-GNFLDIKIASKGGGSENKTKFAMLNPS---DSLVDWIMKTVPTMGAGWCPPGIL 153 (440)
Q Consensus 81 pl~~r~NtgdNtpa---~i~~~~v~-gd~l~i~~~~KGgGSEn~s~l~ml~P~---~~v~~fv~e~V~~aG~~~CPP~~v 153 (440)
| |+|+|||||||+ +||+++|+ ||+++|+++||||||||+|+++||+|+ |||++||+|+|+++|+|||||++|
T Consensus 113 ~-l~r~NtgdNt~~~~pvi~~~iv~~gd~l~I~~~~KGgGsEn~s~~~mL~P~~g~egi~~fVle~V~~aG~~~CPP~iv 191 (299)
T PRK08230 113 T-FDEYNTGKNTGSGVPWVFWEIVPDSDDAEIEVYMAGGGCTLPGRAKVLMPGEGYEGVVKFVFDVITSYGVNACPPLLV 191 (299)
T ss_pred C-ccCcCCCCCCCCCCCEEEEEEecCCCEEEEEEEecCCCcccHhhheeeCCccchhHHHHHHHHHHHhhCCCCCCCceE
Confidence 5 599999999986 99999999 699999999999999999999999998 689999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHhcccCcccchhccCCChhHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecCcccccCc
Q psy3775 154 GIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKP 233 (440)
Q Consensus 154 GVGIGGt~d~a~~LaK~Al~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H~As~P 233 (440)
|||||||+|+|++|||+||+|++| ++||||++|+||+||||+||+||||||||||+||||||||+++|||+||+|
T Consensus 192 GVGIGGt~d~aa~LaK~Allr~i~-----~~n~~p~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H~AslP 266 (299)
T PRK08230 192 GVGIATSVETAAVLSKKAILRPIG-----SRNPNPRAAELEKRLEEGLNRIGLGPQGLTGNSSVMGVNIESAARHPSTIG 266 (299)
T ss_pred EEEecCCHHHHHHHHHHHhccccc-----CCCCChhHHHHHHHHHHHHhhcCcCCCcCCCceEEEEEEeeecCccccCCc
Confidence 999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccceeEEEEeCCCceecC
Q psy3775 234 VAIIPNCAATRHGHIILNGSGPVFMK 259 (440)
Q Consensus 234 VaV~~~C~a~R~~~~~i~~~g~~~l~ 259 (440)
||||+||||+||++++|++||+|++.
T Consensus 267 VaVn~~C~a~R~~~~~i~~d~~~~~~ 292 (299)
T PRK08230 267 VAVSTGCWAHRRGTIVFDADLNYEIL 292 (299)
T ss_pred eEEEcCchhhcCcEEEECCCccEEEe
Confidence 99999999999999999999999887
No 8
>PRK06246 fumarate hydratase; Provisional
Probab=100.00 E-value=1.1e-95 Score=718.37 Aligned_cols=240 Identities=48% Similarity=0.835 Sum_probs=234.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
+|+|+++|++|++||+|+++|++.++|+|||||+++||+++|++|++.| ++|+++|++||++||+ ++|||+|+|+|
T Consensus 38 ~E~s~~ak~~l~~ileN~~iA~~~~~P~CQDTG~~~~fv~iG~~v~~~~--~~l~~ai~egv~~a~~--~~pLR~s~V~~ 113 (280)
T PRK06246 38 KEESPIGKEILKAILENAEIAKEEQVPLCQDTGMAVVFVEIGQDVHIEG--GDLEDAINEGVRKGYE--EGYLRKSVVAD 113 (280)
T ss_pred hccChhHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCcccCC--ccHHHHHHHHHHHHhc--cCCCchhccCC
Confidence 5999999999999999999999999999999999999999999999985 4799999999999999 89999999988
Q ss_pred CCcCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCcccccccccCCch---hHHHHHHHHhhhcCCCCCCCceeEEEE
Q psy3775 81 PHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGI 157 (440)
Q Consensus 81 pl~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~ml~P~~---~v~~fv~e~V~~aG~~~CPP~~vGVGI 157 (440)
|+ +|+||+||||++||+++++||+++|+++||||||||+|+++||+|++ +|++||+|+|.++|++||||++|||||
T Consensus 114 pl-~r~NtgdNtpa~i~~~~v~gd~~~i~~~~KGgGSEn~s~l~ml~P~~g~e~i~~fvle~v~~aG~~~CPP~~vGVGI 192 (280)
T PRK06246 114 PL-TRKNTGDNTPAVIHTEIVPGDKLKITVAPKGGGSENMSALKMLKPADGLEGIKKFVLETVKEAGGNPCPPIIVGVGI 192 (280)
T ss_pred cc-cCccCCCCccceEEEEEecCCEEEEEEEecCCccccHhhhcccCcchhHHHHHHHHHHHHHHcCCCCCCCCeEEEEe
Confidence 85 99999999999999999999999999999999999999999999985 899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcccCcccchhccCCChhHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecCcccccCcEEEe
Q psy3775 158 GGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAII 237 (440)
Q Consensus 158 GGt~d~a~~LaK~Al~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H~As~PVaV~ 237 (440)
|||+|+|++|||+||+|++| ++||||++|+||+||||+||+||||||||||+||||+|||+++|||+||+|||||
T Consensus 193 GGt~d~a~~laK~Allr~i~-----~~n~~~~~a~lE~eLl~~iN~lGIGp~GlGG~tTal~V~Ie~~p~H~AslPVaV~ 267 (280)
T PRK06246 193 GGTFDKAAKLAKKALLRPIG-----ERNPDPEIAALEEELLEEINKLGIGPMGLGGKTTALDVKIETYPCHIASLPVAVN 267 (280)
T ss_pred CCCHHHHHHHHHHHhcCccc-----CCCCChHHHHHHHHHHHHHHhcCcCCCccCCceEEEEEEEeecCCcccCCceEEE
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccceeEEEE
Q psy3775 238 PNCAATRHGHIIL 250 (440)
Q Consensus 238 ~~C~a~R~~~~~i 250 (440)
+|||++||++++|
T Consensus 268 ~~C~a~R~~~v~i 280 (280)
T PRK06246 268 IQCHAARHAEVVL 280 (280)
T ss_pred cccchhhCceEeC
Confidence 9999999999875
No 9
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=100.00 E-value=5.6e-95 Score=711.32 Aligned_cols=238 Identities=42% Similarity=0.662 Sum_probs=231.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
+|+|+++|++|++||+|+++|+++++|+|||||+++||+|+|+++++.| +|+++|+||||+||+ ++|||+|+|+
T Consensus 30 ~E~s~~ak~~l~~ileN~~iA~~~~~P~CQDTG~~~~fv~iG~~~~~~~---~l~~ai~egV~~a~~--~~~LR~s~V~- 103 (273)
T TIGR00722 30 REESEIAKINLEAILDNIEIAEKLGVPVCQDTGVPIFFVKVGSRFVLIG---KLYEAIKQGVEEATE--EVPLRPNAVH- 103 (273)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEECCeecCCc---hHHHHHHHHHHHHhc--cCCCchhccC-
Confidence 5999999999999999999999999999999999999999999998873 699999999999999 8999999995
Q ss_pred CCcCccCCCCCC---ceeEEEEeeCCCEEEEEEEecCCCCcccccccccCCch---hHHHHHHHHhhhcCCCCCCCceeE
Q psy3775 81 PHFIRKNTQDNT---PAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILG 154 (440)
Q Consensus 81 pl~~r~NtgdNt---pa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~ml~P~~---~v~~fv~e~V~~aG~~~CPP~~vG 154 (440)
| |+|+||+||| ||+||+++|+||+++|+|+||||||||+|+++||+|++ ||++||+|+|+++|+|||||++||
T Consensus 104 ~-~~r~Nt~dNtg~~~p~i~~~~v~gd~~~i~v~~KGgGsEn~s~l~mL~P~~g~egi~~fVle~V~~aG~~~CPP~~vG 182 (273)
T TIGR00722 104 P-LTRENTGDNTGLGVPQIHVEIVPGDELEIVVFPKGAGSENPSALKMLKPSDGIEGVKKFVLETVKNAGGKPCPPIIVG 182 (273)
T ss_pred C-CccccCCCCCCCCCCEEEEEEecCCEEEEEEEecCCcccchhheeeecccccHHHHHHHHHHHHHHcCCCCCCCCeEE
Confidence 6 6999999999 78999999999999999999999999999999999984 699999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHhcccCcccchhccCCChhHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecCcccccCcE
Q psy3775 155 IGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPV 234 (440)
Q Consensus 155 VGIGGt~d~a~~LaK~Al~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H~As~PV 234 (440)
||||||+|+|++|||+||+|++| ++||||++|+||+||||+||+||||||||||+||||+|||+++|||+||+||
T Consensus 183 VGIGGt~d~aa~LaK~Allr~ig-----~~n~d~~~a~lE~elle~iN~lGIGp~GlGG~tTal~V~Ie~~p~H~AslPV 257 (273)
T TIGR00722 183 VGIGGSFETAAKLAKKALLRPIG-----ERHPNPKIAKLELELLEEINSLGIGPMGLGGKTTALDVKIESAHCHTASLPV 257 (273)
T ss_pred EEeCCCHHHHHHHHHHHhhhhhc-----cCCCChhHHHHHHHHHHHHHhcCcCCCccCCCeEEEEEEEeecCCcccCCce
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccceeEEEE
Q psy3775 235 AIIPNCAATRHGHIIL 250 (440)
Q Consensus 235 aV~~~C~a~R~~~~~i 250 (440)
|||+||||+||+++++
T Consensus 258 aVn~~C~a~R~a~~~~ 273 (273)
T TIGR00722 258 AVNIQCWAHRRATLVV 273 (273)
T ss_pred EEEcccchhhCeeEeC
Confidence 9999999999999863
No 10
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=100.00 E-value=3.3e-94 Score=706.42 Aligned_cols=239 Identities=48% Similarity=0.797 Sum_probs=234.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
+|+|+.+|++|++||||+++|++.++|+|||||+|+||+++|++|++.| ++++||++||++||+ ++|||+|+|.|
T Consensus 30 ~E~~~~ak~vl~~ileN~~iA~~~~~PlCQDTG~~~~fv~~G~~~~~~g---~l~~ai~~gv~~a~~--~~~LR~s~V~~ 104 (271)
T PF05681_consen 30 RETSPLAKWVLEQILENAEIAAKEKLPLCQDTGIPVFFVEIGQDVPIEG---DLEEAINEGVRKAYK--EGPLRPSVVSD 104 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhhcCcccccCCCeEEEEEEECCCCCcCh---hHHHHHHHHHHHHHh--cCCCCccccCC
Confidence 5999999999999999999999999999999999999999999999984 899999999999999 89999999988
Q ss_pred CCcCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCcccccccccCCch---hHHHHHHHHhhhcCCCCCCCceeEEEE
Q psy3775 81 PHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGI 157 (440)
Q Consensus 81 pl~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~ml~P~~---~v~~fv~e~V~~aG~~~CPP~~vGVGI 157 (440)
|+ +|+||+||+|++||+++++||+++|+++||||||||+|+++||+|++ +|++||+|+|+++|++||||++|||||
T Consensus 105 pl-~r~Ntgdn~P~ii~~~~v~gd~l~i~~~~KGgGsEn~s~l~ml~p~~g~e~v~~fV~d~v~~ag~~~CPP~~iGVGI 183 (271)
T PF05681_consen 105 PL-TRKNTGDNTPAIIHIEIVPGDKLEITVLPKGGGSENMSALKMLNPSDGIEGVKKFVLDTVKKAGGNACPPYIIGVGI 183 (271)
T ss_pred cc-ccccCCCCCCceEEEEEcCCCEEEEEEEecCCCcccHhhhhccCccccHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Confidence 96 99999999999999999999999999999999999999999999984 899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcccCcccchhccCCChhHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecCcccccCcEEEe
Q psy3775 158 GGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAII 237 (440)
Q Consensus 158 GGt~d~a~~LaK~Al~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H~As~PVaV~ 237 (440)
|||+|+|++|||+||+|++| ++||||++++||+||||++|+||||||||||+||||+|||+++|||+||+|||||
T Consensus 184 GGt~d~a~~laKkAllr~~~-----~~~~~~~~a~lE~elle~iN~lGIGp~GlGG~ttaL~V~I~~~p~H~AslpVav~ 258 (271)
T PF05681_consen 184 GGTFDEAALLAKKALLRPLG-----SRNPDPRYAELEEELLEAINKLGIGPQGLGGKTTALDVHIEVAPRHIASLPVAVN 258 (271)
T ss_pred CCCHHHHHHHHHHHhhhhhc-----CCCCCcHHHHHHHHHHHHHHhcCCCcCccCCccEEEEEEEEEcCCcccCceeEEE
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccceeEEEE
Q psy3775 238 PNCAATRHGHIIL 250 (440)
Q Consensus 238 ~~C~a~R~~~~~i 250 (440)
+||||+||++++|
T Consensus 259 ~~C~a~Rr~~~~I 271 (271)
T PF05681_consen 259 VQCWAHRRATAVI 271 (271)
T ss_pred ccchhhhCceeEC
Confidence 9999999999986
No 11
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=100.00 E-value=3.5e-93 Score=699.32 Aligned_cols=256 Identities=48% Similarity=0.724 Sum_probs=246.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775 1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD 80 (440)
Q Consensus 1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d 80 (440)
+|+|++||++|.+||+|++||++.++|+|||||+|+||+++|+++.+. ++++++|+||||+||. ++|||+|.+.|
T Consensus 39 ~Ees~~ak~~l~~il~N~~ia~~~~~P~CQDTG~~~~fvkvG~~~~~~---~~l~~~i~egVr~a~~--~~~lR~sn~~~ 113 (297)
T COG1951 39 REESEIAKYVLLQILENSRIAAKENRPICQDTGIPIFFVKVGQRWPTG---GELEEALNEGVREATE--DNPLRPSNAVD 113 (297)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHhcCCCcccCCCceEEEEEcCCcccCC---CcHHHHHHHHHHHhcc--cCCcchhcccC
Confidence 589999999999999999999999999999999999999999976644 5899999999999997 89999977779
Q ss_pred CCcCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCcccccccccCCch---hHHHHHHHHhhhcCCCCCCCceeEEEE
Q psy3775 81 PHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGI 157 (440)
Q Consensus 81 pl~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~ml~P~~---~v~~fv~e~V~~aG~~~CPP~~vGVGI 157 (440)
|++.|+||||||||+||+++|+||+++|+++||||||||+|+++||+|++ +|++||+|+|.++|++||||++|||||
T Consensus 114 p~~~r~NtgdNtpa~i~~~~v~gd~v~i~~~~KGGGsEn~s~l~~l~Ps~~~e~i~~fVletv~~~G~~~CPP~~vgiGI 193 (297)
T COG1951 114 PLTKRVNTGDNTPAQIHVEIVPGDEVEILVAAKGGGSENKSALKMLTPSEGYEGIKDFVLETVRTLGGNACPPYIVGIGI 193 (297)
T ss_pred chhccccCCCCCCCeEEEEEcCCCcEEEEEEecCCCccchhhhheeCchhhhhHHHHHHHHHHHhcCCCCCCCeeEEEEe
Confidence 98779999999999999999999999999999999999999999999996 899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcccCcccchhccCCChhHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecCcccccCcEEEe
Q psy3775 158 GGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAII 237 (440)
Q Consensus 158 GGt~d~a~~LaK~Al~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p~H~As~PVaV~ 237 (440)
|||+|+|++|||+||+|++| ++||++++++||+||||++|+||||||||||+||||||||+++|||+||+||||+
T Consensus 194 Ggt~e~A~~LaKkal~r~i~-----~~~~~~~~~~~eeelLe~iN~LGIG~~GlGG~tTaldV~V~~~p~H~AslpVav~ 268 (297)
T COG1951 194 GGTAEKAALLAKKALLRPID-----DRNPNEKNAKLEEELLEEINKLGIGPQGLGGKTTALDVKVERAPRHPASLPVAVN 268 (297)
T ss_pred CCcHHHHHHHHHHHhhCccc-----ccCCCccchhHHHHHHHHHHhhCcCcccCCCceEEEEEEEEeccCCccCCceEEE
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccceeEEEEeCCCceecCCCCCCCC
Q psy3775 238 PNCAATRHGHIILNGSGPVFMKPPSLSNW 266 (440)
Q Consensus 238 ~~C~a~R~~~~~i~~~g~~~l~~~~~~~~ 266 (440)
+||||+||++++|++||.|++..+....|
T Consensus 269 ~~C~A~Rra~~~l~~~g~~~~~~~~~~~~ 297 (297)
T COG1951 269 VQCWADRRAKAKLDGDGIWEEKLEHNPGL 297 (297)
T ss_pred eeeccccceeEEECCCccEEecCcccCCC
Confidence 99999999999999999999888766554
No 12
>PF05683 Fumerase_C: Fumarase C-terminus; InterPro: IPR004647 This entry represents various Fe-S type hydro-lyases, including the beta subunit from both L-tartrate dehydratase (TtdB; EC:4.2.1.32) and class 2 fumarate hydratase (FumC; (4.2.1.2 from EC) []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of the archaeal proteins in this group is unknown.; GO: 0016836 hydro-lyase activity; PDB: 2ISB_A.
Probab=100.00 E-value=4.6e-70 Score=514.68 Aligned_cols=187 Identities=39% Similarity=0.667 Sum_probs=130.1
Q ss_pred CCceecCCCCCCCCcccccccC-CCceEEEEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCccc
Q psy3775 253 SGPVFMKPPSLSNWPKIKFTTN-NKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNF 331 (440)
Q Consensus 253 ~g~~~l~~~~~~~~p~~~~~~~-~~~~~~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl 331 (440)
.+..+|++||+||||++..+.. +...++|++ |++++++++|++||+|||||+||||||+||+||+++|++|++||+||
T Consensus 2 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~L~t-Plt~e~i~~L~vGD~V~LsG~i~taRDaaH~ri~e~l~~g~~lP~dl 80 (205)
T PF05683_consen 2 VGPEKLEHDPAQYLPDIELDETAEAREIELTT-PLTEEDIRKLKVGDTVYLSGTIYTARDAAHKRIVELLERGEPLPFDL 80 (205)
T ss_dssp --------------------------EEEEES-S--HHHHHH--TT-EEEEEEEEEE--HHHHHHHHHHHHHT---SS--
T ss_pred cccccccccccccccccccccccceEEEEcCC-CCCHHHHhhCCCCCEEEEeeEEEEEhHHHHHHHHHHHHcCCCCCccc
Confidence 4567999999999999986554 445667887 99999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCCcceeeccccccccchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHh
Q psy3775 332 NNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISK 411 (440)
Q Consensus 332 ~g~~iyh~GP~~~~~g~~igs~GPTTS~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~ 411 (440)
+|++||||||+++++|+.++|+|||||+|||+|++.||+++|+|+|||||+||+++++||++||+|||+++||||||+++
T Consensus 81 ~g~~Iyh~GP~~~~~g~~igs~GPTTS~RMd~~~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~~~ 160 (205)
T PF05683_consen 81 KGQVIYHAGPAPAPPGYVIGSIGPTTSGRMDPYTPELLEKLGVRAIIGKGGRSPEVVEACKKYGAVYLAAPGGAAALLAQ 160 (205)
T ss_dssp TT-EEE-B--EEESSSEEEEE--B-BGGGGTTTHHHHHHH-S-EEEEEBS---HHHHHHHTT-TEEEEEE-S-SSTTGGG
T ss_pred CCCEEEEecCCCCCCCcEEEEECCccchhhhHhHHHHHHhcCeEEEEecCCCCHHHHHHHHhccEEEEEeccHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hceeeeeecccCCCceeEEEEEEeccCCC
Q psy3775 412 AIKSAKIICFEDLGMEAIYEFNVENMPVT 440 (440)
Q Consensus 412 ~Ik~v~~v~~~dLG~EAi~~leVe~fP~~ 440 (440)
+||++++|+|+||||||+|+|||||||+|
T Consensus 161 ~Ik~v~~v~~~eLG~EAi~~leVedfP~i 189 (205)
T PF05683_consen 161 CIKSVEVVAWEELGMEAIWELEVEDFPLI 189 (205)
T ss_dssp GEEEEEEEE-GGG-TTSEEEEEEEEEEEE
T ss_pred ceeEEEEEeccccCceEEEEEEEecCCEE
Confidence 99999999999999999999999999985
No 13
>PRK06842 fumarate hydratase; Provisional
Probab=100.00 E-value=3.7e-67 Score=488.26 Aligned_cols=160 Identities=46% Similarity=0.809 Sum_probs=157.4
Q ss_pred EEEEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeecccccc
Q psy3775 279 HYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTA 358 (440)
Q Consensus 279 ~~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS 358 (440)
++|++ |+++|++++|++||+|||||+||||||+||+||+|++++|++||+||+|++||||||+++++|+.+||+|||||
T Consensus 3 ~~l~t-Pl~~e~i~~L~vGD~V~LsG~i~taRDaAHkrl~e~l~~G~~lP~dl~g~~Iy~~GP~~~~~g~~igs~GPTTS 81 (185)
T PRK06842 3 KKITT-PLTEEKVKDLKAGDSVLISGYIYTARDAAHKRLIELLDKGEELPIDIKDQIIYYVGPSPAKPGKVIGSAGPTTS 81 (185)
T ss_pred cEeeC-CCCHHHHhhCCCCCEEEEeEEEEEEeHHHHHHHHHHHhcCCCCCcCcCCCEEEEecCCCCCCCCeeEeeCCchH
Confidence 56888 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCceeEEEEEEeccC
Q psy3775 359 SRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMP 438 (440)
Q Consensus 359 ~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~EAi~~leVe~fP 438 (440)
+|||+|+|.|++ .|+++|||||+||++++++|++||+|||+++||||||++++||++++|+|+||||||+|+|+|+|||
T Consensus 82 ~RMd~y~~~l~~-~Gv~~~IGKG~r~~~~~~a~k~~gaVYl~~~GGaaAlla~~Ik~v~~v~~~dLG~EAi~~l~V~dfP 160 (185)
T PRK06842 82 YRMDAYAPRLLD-IGLKGMIGKGARSDEVIESIKKNKAVYFGAIGGAAALIAKSIKKSEVIAYEDLGAEAIRKLEVKDFP 160 (185)
T ss_pred HHhhhhHHHHHH-CCCeEEEECCCCCHHHHHHHHHcCEEEEEcCChHHHHHHhheeeEeEEeccccCccEEEEEEEecCC
Confidence 999999999999 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy3775 439 VT 440 (440)
Q Consensus 439 ~~ 440 (440)
+|
T Consensus 161 ~i 162 (185)
T PRK06842 161 VV 162 (185)
T ss_pred EE
Confidence 85
No 14
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=100.00 E-value=3e-65 Score=471.17 Aligned_cols=160 Identities=49% Similarity=0.863 Sum_probs=155.2
Q ss_pred EEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeecccccccc
Q psy3775 281 VNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASR 360 (440)
Q Consensus 281 i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS~R 360 (440)
++|++++.|++++||+||+|||||+|||+||+||+||+|++++||++|+||+|++||||||+++++++.++|+|||||+|
T Consensus 3 ~~L~~p~~e~i~~LkvGd~v~lsG~I~t~RD~AH~ri~e~~~~ge~lP~dl~g~~Iy~aGP~~~~~~~~v~s~GPTTs~R 82 (184)
T COG1838 3 VDLNTPLKEEIAKLKVGDVVYLSGKIVTGRDAAHKRLLEMLDRGEELPVDLKGHIIYYAGPVKTKDGWVVGSAGPTTSGR 82 (184)
T ss_pred eeccCcCHHHHHhccCCCEEEEeeEEEEehhHHHHHHHHHHhcCCCCCccCCCCEEEEeccccCCCCceeeccCCcchhh
Confidence 55555555999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCceeEEEEEEeccCCC
Q psy3775 361 MDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVT 440 (440)
Q Consensus 361 Md~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~EAi~~leVe~fP~~ 440 (440)
||+|+++|+++.|+++|||||+|++++.++|++||+|||+++||||+|++++||+++.|+|+||||||||+|||||||+|
T Consensus 83 Md~~~~~~l~~~G~~~~iGKG~~~~~~~ea~~~~kavyl~~~gGaA~L~a~~IK~~~~v~~~dLGmEAiw~leVe~fPli 162 (184)
T COG1838 83 MDKFTDELLEQTGVLAMIGKGGRGPETVEACKKHKAVYLVAPGGAAALAAKSIKSVRCVAYEDLGMEAIWELEVEDFPLI 162 (184)
T ss_pred hhhhHHHHHHhcCeEEEEecCCcCHHHHHHHHHcCeEEEEccchHHHHHHHhhhheeeEeecccChhheeEEEeccccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
No 15
>PRK06043 fumarate hydratase; Provisional
Probab=100.00 E-value=2.7e-64 Score=471.04 Aligned_cols=159 Identities=36% Similarity=0.608 Sum_probs=153.8
Q ss_pred EEEEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCC--Ccceeecccc
Q psy3775 279 HYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVR--NEVIGPAGPT 356 (440)
Q Consensus 279 ~~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~--g~~igs~GPT 356 (440)
++|++ |+++|++++|++||+|||||+||||||+||+||+|++++|++||+||+|++||||||+++++ |+.+||+|||
T Consensus 3 ~~L~~-Pl~~e~i~~L~vGD~V~LsG~IytaRDaaH~rl~e~~~~G~~lP~dl~g~~Iyh~GP~~~k~~~g~~~gs~GPT 81 (192)
T PRK06043 3 YHLKT-PLKKEDIEKLNVGDIVYISGEILTARDEAHARILEMKEKGKELPFSLEGAVIYHCGPLMKKTDEGWKVVSAGPT 81 (192)
T ss_pred eeccC-CCCHHHHhhCCCCCEEEEEEEEEEEeHHHHHHHHHHHhcCCCCCcCcCCCEEEEecCCCccCCCCCeeeeeCCC
Confidence 56888 99999999999999999999999999999999999999999999999999999999998874 4699999999
Q ss_pred ccccchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCc-eeEEEEEEe
Q psy3775 357 TASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVE 435 (440)
Q Consensus 357 TS~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~-EAi~~leVe 435 (440)
||+|||+|+|.|+++.|+++|||||+| +++++||+ ||+|||+++||||||++++||++++|+|+|||| ||+|+||||
T Consensus 82 TS~RMd~y~~~l~~~~G~~~~IGKG~r-~~v~~a~k-~g~vYl~~~GGaaALl~~~Ik~~~~v~~~dLGmpEAi~~leV~ 159 (192)
T PRK06043 82 TSARMSKMTPKLLEKVEVRAIIGKGGM-KNVADALK-GKCVYLAYTGGCAALAAESIKRVKAVHWLDLGMPEAVWVLEVE 159 (192)
T ss_pred hHHHhhhhHHHHHHhCCcEEEEEcCCC-HHHHHHHh-CCeEEEEeCChHHHHHHhcccEEEEEeeccCCCccEEEEEEEe
Confidence 999999999999998899999999999 99999998 999999999999999999999999999999997 999999999
Q ss_pred cc-CCC
Q psy3775 436 NM-PVT 440 (440)
Q Consensus 436 ~f-P~~ 440 (440)
|| |+|
T Consensus 160 dfGP~i 165 (192)
T PRK06043 160 EFGPLI 165 (192)
T ss_pred eccceE
Confidence 99 985
No 16
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated
Probab=100.00 E-value=7.9e-64 Score=471.27 Aligned_cols=158 Identities=25% Similarity=0.464 Sum_probs=153.1
Q ss_pred EEEEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCC---CC-cceeecc
Q psy3775 279 HYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPV---RN-EVIGPAG 354 (440)
Q Consensus 279 ~~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~---~g-~~igs~G 354 (440)
++|++ |+++|++++|++||+|||||+||||||+||+||+ ++|++|||||+|++||||||++++ +| +.++|+|
T Consensus 4 ~~l~t-Pl~~e~i~~L~vGD~V~LsG~IytaRDaAHkrl~---e~g~~lP~dl~g~~Iyh~GP~~~~~~~~g~~~~gs~G 79 (204)
T PRK08228 4 KILTT-PIKDEDLQDIKVGDVIYLTGTLVTCRDVAHRRLI---ELGRELPVDLNGGAIFHAGPIVRPKKNDDKFEMVSVG 79 (204)
T ss_pred eEecC-CCCHHHHhhCCCCCEEEEEEEEEEEeHHHHHHHH---HcCCCCCcCCCCCEEEEeCCCCCccCCCCCcEEEEeC
Confidence 67888 9999999999999999999999999999999997 589999999999999999999986 66 8999999
Q ss_pred ccccccchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCc-eeEEEEE
Q psy3775 355 PTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFN 433 (440)
Q Consensus 355 PTTS~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~-EAi~~le 433 (440)
||||+|||+|++.||++.|+++|||||+||++|++||++||+|||+++||||||++++||++++|+|+|||| ||+|+|+
T Consensus 80 PTTS~RMd~y~~~~l~~~G~~~~IGKG~~~~~~~~a~k~~gavYl~~~GGaaaL~a~~Ik~v~~V~~~dLGmpEAv~~l~ 159 (204)
T PRK08228 80 PTTSMRMEKFEKEFIEQTGVKLIVGKGGMGPGTEEGCQEFKALHCVFPAGCAVLAATQVEEIEDAQWRDLGMPETLWVCR 159 (204)
T ss_pred CCcHHHhhhhHHHHHHhCCcEEEEECCCCCHHHHHHHHHcCEEEEEcCcHHHHHHHhhccEEEEeeeccCCCccEEEEEE
Confidence 999999999999999988999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred Eecc-CCC
Q psy3775 434 VENM-PVT 440 (440)
Q Consensus 434 Ve~f-P~~ 440 (440)
|||| |+|
T Consensus 160 VedfGP~i 167 (204)
T PRK08228 160 VKEFGPLI 167 (204)
T ss_pred EeeccceE
Confidence 9999 986
No 17
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=100.00 E-value=1.6e-63 Score=458.04 Aligned_cols=152 Identities=37% Similarity=0.697 Sum_probs=148.7
Q ss_pred HHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCC-cceeeccccccccchhhHHH
Q psy3775 289 KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRN-EVIGPAGPTTASRMDHFTNL 367 (440)
Q Consensus 289 e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g-~~igs~GPTTS~RMd~y~~~ 367 (440)
|++++|++||+|||||+|||+||+||+||+|++++|++||+||+|++||||||+++++| +.++|+|||||+|||+|+|.
T Consensus 1 e~i~~L~vGD~V~LsG~i~taRD~ah~rl~e~~~~g~~lP~dl~g~~Iy~~GP~~~~~g~~~~gs~GPTTS~RMd~y~~~ 80 (168)
T TIGR00723 1 EQILKLKVGDVVYLTGTIFTARDEAHARLLELIDEGKELPFDLNGSVIYHAGPIVTKNGEWEVVSVGPTTSARMNPFEPE 80 (168)
T ss_pred ChhHhCCCCCEEEEEEEEEEEEHHHHHHHHHHHHcCCCCCcCCCCCEEEEeCCCCCCCCCceeEEeCCChHHHHHHhHHH
Confidence 57999999999999999999999999999999999999999999999999999998888 69999999999999999999
Q ss_pred HHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCc-eeEEEEEEecc-CCC
Q psy3775 368 ILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVT 440 (440)
Q Consensus 368 ~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~-EAi~~leVe~f-P~~ 440 (440)
|++++|+++|||||+||+++++|||+||+|||+++||||||++++||++++|+|+|||| ||+|+|||||| |+|
T Consensus 81 ll~~~Gv~~~IGKG~~~~~~~~a~k~~gaVYl~~~GGaaAlla~~Ik~~~~v~~~dLGmpEAi~~leVedfGPli 155 (168)
T TIGR00723 81 LLEKLGVMAIIGKGGMSKEVVEACRKYKAVYLAFPGGCAALLAQSVKKVEGVAWEDLGMPEAIWELEVEDFGPLI 155 (168)
T ss_pred HHHhCCcEEEEECCCCCHHHHHHHHHCCEEEEEcCcHHHHHHHhcccEEEEEeecCCCCccEEEEEEEecceeEE
Confidence 99988999999999999999999999999999999999999999999999999999997 99999999999 985
No 18
>PRK08395 fumarate hydratase; Provisional
Probab=100.00 E-value=1e-59 Score=430.76 Aligned_cols=148 Identities=34% Similarity=0.614 Sum_probs=140.3
Q ss_pred EEEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeeccccccc
Q psy3775 280 YVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTAS 359 (440)
Q Consensus 280 ~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS~ 359 (440)
+|++ |+++|++++|++||+|||||+|||+||+||+||+| + .+|+||+|++||||||++++ + .++|+|||||+
T Consensus 2 ~l~t-Pl~~e~i~~L~~GD~V~LsG~i~taRDaah~rl~e---~--~lP~dl~g~~iy~~GP~~~~-~-~igs~GPTTS~ 73 (162)
T PRK08395 2 KLKT-PLSWEDVLKLKAGDVVYLSGIIYTARDLAHRRFLS---E--GFPFNPEGAVIYHCGPLVKN-K-KIVSAGPTTSA 73 (162)
T ss_pred eeeC-CCCHHHHhhCCCCCEEEEEEEEEEEEHHHHHHHHh---c--CCCccccCCEEEEecCCCCC-C-CeEEECCcchH
Confidence 5788 99999999999999999999999999999999986 3 49999999999999999986 4 89999999999
Q ss_pred cchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCc-eeEEEEEEeccC
Q psy3775 360 RMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENMP 438 (440)
Q Consensus 360 RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~-EAi~~leVe~fP 438 (440)
|||+|+|.|++ +|+++|||||+||+++ + +||+|||+++||||||++++||++++|+|+|||| ||+|++||||||
T Consensus 74 RMd~~~~~l~~-~Gv~~iIGKG~~~~~~---~-~~gavYl~~~GGaaal~~~~Ik~~~~v~~~dLGm~EAi~~leVedfP 148 (162)
T PRK08395 74 RMNKYLDFLFS-LGVRGIIGKGGMNAEP---F-KGRAVYFAFPGGAGSLAAKSIKRVRDVYWEDLGMPDAVWELEVEDFP 148 (162)
T ss_pred HHHHhHHHHHH-CCCeEEEEcCCCCHHH---h-cCCEEEEecccHHHHHHHhcccEEEEEeecCCCCccEEEEEEEecCc
Confidence 99999999999 6999999999999975 3 6999999999999999999999999999999997 999999999999
Q ss_pred CC
Q psy3775 439 VT 440 (440)
Q Consensus 439 ~~ 440 (440)
+|
T Consensus 149 ~i 150 (162)
T PRK08395 149 LL 150 (162)
T ss_pred EE
Confidence 85
No 19
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=76.25 E-value=2.5 Score=42.23 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.7
Q ss_pred CceeEEEEcCCHHHHHHHHHHHh--ccc
Q psy3775 150 PGILGIGIGGTPEKAMLMAKKVL--MQD 175 (440)
Q Consensus 150 P~~vGVGIGGt~d~a~~LaK~Al--~r~ 175 (440)
.+-+|||||.|+..|+.+|++|| +|.
T Consensus 207 ~lkvGIGig~ta~~A~~~At~ALe~iR~ 234 (246)
T PF05165_consen 207 DLKVGIGIGKTARDAGMLATKALETIRE 234 (246)
T ss_dssp -EEEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred eEEEeecCCCCHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999998 664
No 20
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=60.79 E-value=6.3 Score=39.58 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=21.6
Q ss_pred eeEEEEcCCHHHHHHHHHHHh--ccc
Q psy3775 152 ILGIGIGGTPEKAMLMAKKVL--MQD 175 (440)
Q Consensus 152 ~vGVGIGGt~d~a~~LaK~Al--~r~ 175 (440)
-+|||+|-|+..|..+||+|| +|.
T Consensus 217 kvGIG~g~~a~~A~~~A~~aLe~iR~ 242 (254)
T PRK02240 217 KVGIGRGKTAEDAGNLAKHALETIRE 242 (254)
T ss_pred EeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 589999999999999999997 554
No 21
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=42.37 E-value=10 Score=30.28 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=27.9
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEe
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~ 339 (440)
.++-.++.+|++||++.|.-. ..+++++...|+.+|++
T Consensus 20 ~l~l~el~~L~~Gdvi~l~~~-----------------~~~~v~l~v~g~~~~~g 57 (77)
T PF01052_consen 20 SLTLGELLNLKVGDVIPLDKP-----------------ADEPVELRVNGQPIFRG 57 (77)
T ss_dssp EEEHHHHHC--TT-EEEECCE-----------------SSTEEEEEETTEEEEEE
T ss_pred EeEHHHHhcCCCCCEEEeCCC-----------------CCCCEEEEECCEEEEEE
Confidence 356799999999999999832 23677788999999998
No 22
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=40.94 E-value=45 Score=33.32 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.4
Q ss_pred CceeEEEEcCCHHHHHHHHHHHh--ccc
Q psy3775 150 PGILGIGIGGTPEKAMLMAKKVL--MQD 175 (440)
Q Consensus 150 P~~vGVGIGGt~d~a~~LaK~Al--~r~ 175 (440)
-+-+|||||-|+..|..||+.|| +|-
T Consensus 211 ~lkvGIGig~ta~~A~~lA~~aLe~iR~ 238 (250)
T COG2429 211 DLKVGIGIGKTARDAGALATHALEKIRG 238 (250)
T ss_pred ceEeeeccCCCHHHHHHHHHHHHHHHhc
Confidence 35689999999999999999997 554
No 23
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=39.76 E-value=65 Score=31.74 Aligned_cols=38 Identities=32% Similarity=0.466 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCCHHHH--HHHHHHHh
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKA--MLMAKKVL 172 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt~d~a--~~LaK~Al 172 (440)
+.+.+|+.+.+.+.|.+- +-||+-|.-|.| +.|+++|+
T Consensus 3 ~~l~~~L~~~~~~~g~~~-----vVvglSGGiDSav~A~La~~Al 42 (242)
T PF02540_consen 3 EALVDFLRDYVKKSGAKG-----VVVGLSGGIDSAVVAALAVKAL 42 (242)
T ss_dssp HHHHHHHHHHHHHHTTSE-----EEEEETSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCe-----EEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999433 337899987754 58888887
No 24
>PRK06033 hypothetical protein; Validated
Probab=36.82 E-value=30 Score=28.85 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=33.0
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI 342 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~ 342 (440)
-++-+|+-+|++||++.|. ....+++.+...|..+|++=|.
T Consensus 19 ~i~l~dlL~L~~GDVI~L~-----------------~~~~~~v~v~V~~~~~f~g~~G 59 (83)
T PRK06033 19 SMPIHQVLRMGRGAVIPLD-----------------ATEADEVWILANNHPIARGEVL 59 (83)
T ss_pred cccHHHHhCCCCCCEEEeC-----------------CCCCCcEEEEECCEEEEEEEEE
Confidence 4677999999999999996 1234678899999999999554
No 25
>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]
Probab=34.88 E-value=36 Score=29.75 Aligned_cols=46 Identities=24% Similarity=0.439 Sum_probs=34.9
Q ss_pred eeecccccc-----ccchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEc
Q psy3775 350 IGPAGPTTA-----SRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVA 401 (440)
Q Consensus 350 igs~GPTTS-----~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~ 401 (440)
++-.-||-| .|.|.|. .|+-+|.=.|.+++++++.+.+||-.|---
T Consensus 56 vam~~Pt~SWVakWqrid~f~------~GlYA~~V~G~L~edvve~L~~~g~~Y~pR 106 (112)
T COG5204 56 VAMLQPTNSWVAKWQRIDEFR------KGLYAMVVEGALSEDVVEDLEQHGRIYYPR 106 (112)
T ss_pred HHHhcccHHHHHHHhhhcccc------cceeEEEEcccCCHHHHHHHHHhCccccCC
Confidence 434568876 2344332 489999999999999999999999999643
No 26
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=34.85 E-value=41 Score=35.88 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=31.0
Q ss_pred hhhHH-----HHHHHhCceEEEeccc--CCHHHHHHHHhcCeEEEEccc
Q psy3775 362 DHFTN-----LILEKIGLIAMIGKAE--RSDKIIKLIKKQKIAYLVAVG 403 (440)
Q Consensus 362 d~y~~-----~~l~~~Gv~~~IGKG~--~~~~~~~a~~~~gavYl~~~G 403 (440)
|.|.| +...+.||+.+|==|| |+++|++||.+||. =+.++|
T Consensus 337 DAFFPF~D~Id~Aa~~GV~aIiQPGGSiRD~evI~aane~gi-aMvfTg 384 (390)
T PRK07106 337 DAFFPFGDNIERAAKSGVKYIAQPGGSIRDDNVIETCNKYGM-TMAFTG 384 (390)
T ss_pred cccCCCCchHHHHHHcCCEEEECCCCCCCcHHHHHHHHHhCC-EEEECC
Confidence 55554 4666789999998887 68899999999983 344444
No 27
>PRK05698 fliN flagellar motor switch protein; Validated
Probab=33.53 E-value=54 Score=30.76 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=35.2
Q ss_pred CCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCC
Q psy3775 284 NTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPIN 343 (440)
Q Consensus 284 ~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~ 343 (440)
+.++-.++-+|++||+|-|+- ..++++.+.+.|..+|++=+..
T Consensus 90 t~itlrdLL~L~~GDVI~Ldk-----------------~~~epv~V~VnG~~~f~Ge~Gv 132 (155)
T PRK05698 90 TDINIRNLLQLNQGSVIELDR-----------------LAGEPLDVLVNGTLIAHGEVVV 132 (155)
T ss_pred CcccHHHHhCCCCCCEEEeCC-----------------CCCCCEEEEECCEEEEEEEEEE
Confidence 367889999999999999971 2357888999999999995543
No 28
>PF06995 Phage_P2_GpU: Phage P2 GpU; InterPro: IPR009734 This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein (O64315 from SWISSPROT) which is thought to be involved in tail assembly [].
Probab=31.98 E-value=63 Score=28.23 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=29.9
Q ss_pred CEEEEeEEEEee---ehHHHHHHHHHHHcCCCCCcccC
Q psy3775 298 EILLLNGKILTG---RDAAHNRIQYMLSKGEKIPVNFN 332 (440)
Q Consensus 298 D~V~LsG~i~ta---RDaaH~rl~e~l~~g~~lP~dl~ 332 (440)
|.+.|+|+++.. -.....+|.++.++|+++|+-+=
T Consensus 43 ~~itl~g~l~~~~~~~~~~l~~Lr~~~~~g~p~~Lv~G 80 (121)
T PF06995_consen 43 DTITLSGVLFPEFGGGRKELDKLRAMAESGEPLPLVIG 80 (121)
T ss_pred ceEEEEEEEehHHCCCHHHHHHHHHHHHcCCceEEEEC
Confidence 789999999955 47888999999999999996553
No 29
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=28.93 E-value=18 Score=33.72 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=19.5
Q ss_pred EEcCCCCHHHHhcCCCCCEEEEeEE
Q psy3775 281 VNLNTLTKKEVSSWRSGEILLLNGK 305 (440)
Q Consensus 281 i~l~p~~~e~v~~L~vGD~V~LsG~ 305 (440)
|.| ++++++.++|+.||.|.|...
T Consensus 81 I~L-~v~~e~~~~l~~G~~v~L~~~ 104 (160)
T PF14306_consen 81 IVL-DVSEEEAKSLKEGDKVALRDP 104 (160)
T ss_dssp --E-EECHHHHTTCTTTSEEEEEET
T ss_pred EEE-ECCHHHHHhccCCCEEEEECC
Confidence 556 678999999999999999865
No 30
>PRK08433 flagellar motor switch protein; Validated
Probab=28.87 E-value=76 Score=28.13 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=34.7
Q ss_pred CCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCC
Q psy3775 284 NTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPIN 343 (440)
Q Consensus 284 ~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~ 343 (440)
+.++-.|+-+|++||++.|+ -..++++.+...|..+|++=|..
T Consensus 43 t~itl~dlL~Lq~GDVI~Ld-----------------~~~~e~v~v~V~g~~~f~G~~G~ 85 (111)
T PRK08433 43 TQISLLEILKFEKGSVIDLE-----------------KPAGESVELYINGRIIGKGEVMV 85 (111)
T ss_pred ccccHHHHhCCCCCCEEEeC-----------------CCCCCCEEEEECCEEEEEEEEEE
Confidence 35788999999999999996 12346788899999999996654
No 31
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=27.61 E-value=84 Score=24.04 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCHHHHhcCCCCCEEEEe
Q psy3775 277 KFHYVNLNTLTKKEVSSWRSGEILLLN 303 (440)
Q Consensus 277 ~~~~i~l~p~~~e~v~~L~vGD~V~Ls 303 (440)
+.+++.| |-++ .-..|..||+|||.
T Consensus 32 ~~iEvel-~~~~-~~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 32 EPIEVEL-PRER-RQLGLQPGDRVYLR 56 (58)
T ss_pred CEEEEEe-CHhH-HhcCCCCCCEEEEE
Confidence 4667777 6666 55577889999985
No 32
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=27.32 E-value=32 Score=24.26 Aligned_cols=18 Identities=22% Similarity=0.615 Sum_probs=14.0
Q ss_pred cCCCCCEEEEeEEEEeee
Q psy3775 293 SWRSGEILLLNGKILTGR 310 (440)
Q Consensus 293 ~L~vGD~V~LsG~i~taR 310 (440)
....||+|.-.|.+|.|+
T Consensus 9 ~Y~~Gd~V~~~g~~y~a~ 26 (41)
T PF02839_consen 9 TYNAGDRVSYNGKLYQAK 26 (41)
T ss_dssp EE-TT-EEEETTEEEEES
T ss_pred EEcCCCEEEECCCEEEEe
Confidence 467899999999999885
No 33
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=27.06 E-value=2.9e+02 Score=28.54 Aligned_cols=110 Identities=13% Similarity=0.172 Sum_probs=63.2
Q ss_pred EEEEeeCCCEEEEEEEecCCCCcccccccccCCchhHHHHHHHHhhhcCCC-CCCCce--------eEEEEcCCHHHHHH
Q psy3775 96 INMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAG-WCPPGI--------LGIGIGGTPEKAML 166 (440)
Q Consensus 96 i~~~~v~gd~l~i~~~~KGgGSEn~s~l~ml~P~~~v~~fv~e~V~~aG~~-~CPP~~--------vGVGIGGt~d~a~~ 166 (440)
+++.+.+.|..++.+-.....+. ..+..+..+..+.++....++-.+ +=+|.. +|.|+|.|+--+..
T Consensus 32 ~~v~~~~s~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP~g~GLGSSAAVsva 107 (307)
T COG1577 32 VTVTISESDSNKIVIESSDLKSS----TLERDEDEGYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVA 107 (307)
T ss_pred EEEEEEecCCCcEEEeccCCCCc----cccccccchHHHHHHHHHHHHhcccCCCCeEEEEecCCCCCCCccHHHHHHHH
Confidence 45556666666666666665444 111212224445444444444431 122221 28899998887777
Q ss_pred HHHHHhcccCcccchhccCCChhHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeec
Q psy3775 167 MAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMY 225 (440)
Q Consensus 167 LaK~Al~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~ 225 (440)
+++ |+.+.+| ..-++...++|..+..-.+. |+.+.+|+.+.++
T Consensus 108 ~i~-al~~~~g-----~~ls~~~l~~la~~~e~~vq----------G~~Sg~D~a~~~~ 150 (307)
T COG1577 108 VIK-ALSAYFG-----VELSPEELAKLANKVELIVQ----------GKASGIDIATITY 150 (307)
T ss_pred HHH-HHHHhcC-----CCCCHHHHHHHHHHHHHHHc----------CCCCcccceEEEe
Confidence 766 7888888 44555556666555544443 7777788777653
No 34
>PF06191 DUF995: Protein of unknown function (DUF995); InterPro: IPR009337 This is a family of uncharacterised Proteobacteria proteins.
Probab=26.77 E-value=36 Score=31.52 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=11.9
Q ss_pred HHHHhcCCCCCEEE
Q psy3775 288 KKEVSSWRSGEILL 301 (440)
Q Consensus 288 ~e~v~~L~vGD~V~ 301 (440)
.++.++|+.||.|.
T Consensus 132 ~DE~~kl~~gd~vs 145 (145)
T PF06191_consen 132 GDEFRKLVRGDYVS 145 (145)
T ss_pred CchHHhhccCCccC
Confidence 67889999999874
No 35
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=26.64 E-value=47 Score=26.94 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=31.3
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI 342 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~ 342 (440)
.++-+|+.+|++||++-|.= ...+++.+...|+.+|++=+.
T Consensus 20 ~itl~ell~L~~Gdvi~L~~-----------------~~~~~v~l~v~g~~~~~g~lg 60 (77)
T TIGR02480 20 RITLGDLLKLGEGSVIELDK-----------------LAGEPLDILVNGRLIARGEVV 60 (77)
T ss_pred EeEHHHHhcCCCCCEEEcCC-----------------CCCCcEEEEECCEEEEEEEEE
Confidence 35679999999999999861 123567788899999998554
No 36
>PRK06666 fliM flagellar motor switch protein FliM; Validated
Probab=26.49 E-value=63 Score=33.02 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPIN 343 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~ 343 (440)
.++-.|+-+|++||++-|+- ..++++++...|+.+|+|=|..
T Consensus 270 ~i~l~dll~L~vGDVI~L~~-----------------~~~~~v~v~v~~~~~f~g~~G~ 311 (337)
T PRK06666 270 KLTLSEILNLKVGDVIPLEK-----------------PADDPLIVYVDGKPKFLCQYGK 311 (337)
T ss_pred eeeHHHHhCCCCCCEEEeCC-----------------CCCCcEEEEECCEEEEEEEEEE
Confidence 56789999999999999982 2347889999999999996654
No 37
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=26.26 E-value=65 Score=26.08 Aligned_cols=21 Identities=10% Similarity=0.469 Sum_probs=17.1
Q ss_pred CHHHHhcCCCCCEEEEeEEEE
Q psy3775 287 TKKEVSSWRSGEILLLNGKIL 307 (440)
Q Consensus 287 ~~e~v~~L~vGD~V~LsG~i~ 307 (440)
.+.-++.|+.||.|+++|.+-
T Consensus 55 a~~~~~~~~kG~~V~v~G~l~ 75 (100)
T cd04496 55 AENAAKYLKKGDLVYVEGRLR 75 (100)
T ss_pred HHHHHHHhCCCCEEEEEEEEE
Confidence 344566799999999999985
No 38
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=26.03 E-value=23 Score=27.03 Aligned_cols=50 Identities=20% Similarity=0.382 Sum_probs=31.7
Q ss_pred cccceeEEEEeCCCceecCCCCCCCCcccccccCCCceEEEEcCCCCHHHHhcCCCCCEEEE
Q psy3775 241 AATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLL 302 (440)
Q Consensus 241 ~a~R~~~~~i~~~g~~~l~~~~~~~~p~~~~~~~~~~~~~i~l~p~~~e~v~~L~vGD~V~L 302 (440)
-+.+|+.+..+.++.|.++... +.+...+|-.++...+-..|+.||++.|
T Consensus 18 iSr~Ha~i~~~~~~~~~i~d~~------------s~ngt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 18 ISRRHARISFDDDGQFYIEDLG------------STNGTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp SSTTSEEEEEETTEEEEEEESS------------SSS-EEETTEEESSTSEEEE-TTEEEEE
T ss_pred eeeeeeEEEEeceeeEEEEeCC------------CCCcEEECCEEcCCCCEEECCCCCEEEc
Confidence 4778999999888666654421 1234455554555666678889998875
No 39
>PRK07963 fliN flagellar motor switch protein FliN; Validated
Probab=25.49 E-value=92 Score=28.60 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=34.5
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPIN 343 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~ 343 (440)
.++-.++-+|++||+|.|+. ..++++.+...|..+|++=+..
T Consensus 72 ~itlrdLL~L~~GDVI~Ld~-----------------~~~epv~V~Vng~~if~GevGv 113 (137)
T PRK07963 72 RMTIKELLRLTQGSVVALDG-----------------LAGEPLDILINGYLIAQGEVVV 113 (137)
T ss_pred cccHHHHhCCCCCCEEEeCC-----------------CCCCCEEEEECCEEEEEEEEEE
Confidence 57789999999999999972 2357888999999999995543
No 40
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.13 E-value=2.1e+02 Score=29.24 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=47.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCC-HHHHHHHHHHHhcccCcccchhcc-CCChhHHHHHHHHHHHHHhcCC
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGT-PEKAMLMAKKVLMQDINMNSIIKN-GPKNKIEELRLELFNKINSLGI 206 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~-~~~~~~a~lE~eLle~iN~lGI 206 (440)
+.+++.+.+.+..+..+.++|....|=+|.. ....+.-.|+...+.+|++.-.-+ .++.. |++|++.|++|+=
T Consensus 13 ~~i~~~~~~~v~~l~~~g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~----~~~l~~~I~~lN~ 87 (286)
T PRK14175 13 KDYRQGLQDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETAT----EEEVLNELNRLNN 87 (286)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHhC
Confidence 5688888888887755568898888889887 455667777777888886532111 22233 3455556665543
No 41
>PRK11507 ribosome-associated protein; Provisional
Probab=25.05 E-value=58 Score=26.71 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=16.6
Q ss_pred HHHhcCCCCCEEEEeEEEEe
Q psy3775 289 KEVSSWRSGEILLLNGKILT 308 (440)
Q Consensus 289 e~v~~L~vGD~V~LsG~i~t 308 (440)
..=++|+.||+|.+.|..|.
T Consensus 48 rRgkKl~~GD~V~~~g~~~~ 67 (70)
T PRK11507 48 RKRCKIVAGQTVSFAGHSVQ 67 (70)
T ss_pred ccCCCCCCCCEEEECCEEEE
Confidence 34479999999999998774
No 42
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.03 E-value=2.2e+02 Score=29.16 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCC-HHHHHHHHHHHhcccCcccchhcc-CCChhHHHHHHHHHHHHHhcCCc
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGT-PEKAMLMAKKVLMQDINMNSIIKN-GPKNKIEELRLELFNKINSLGIG 207 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~-~~~~~~a~lE~eLle~iN~lGIG 207 (440)
+.+++.+.+.+..+..+.+.|....|=+|-. ....+.-.|+...+.+|++.-.-. .++-. |+||++.|++|+=-
T Consensus 13 ~~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t----~~el~~~I~~lN~D 88 (284)
T PRK14193 13 DEIKADLAERVAALKEKGITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADAT----QEELNAVIDELNAD 88 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHhCC
Confidence 5688888888887766678998888889887 455667777778888986531111 12222 34566666666544
Q ss_pred cC
Q psy3775 208 AQ 209 (440)
Q Consensus 208 p~ 209 (440)
+.
T Consensus 89 ~~ 90 (284)
T PRK14193 89 PA 90 (284)
T ss_pred CC
Confidence 43
No 43
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=24.92 E-value=66 Score=32.48 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=29.5
Q ss_pred HHHHHHHhhhcCCCCCC-CceeEEEEcCCHHHHHHHHHHHhcccCc
Q psy3775 133 VDWIMKTVPTMGAGWCP-PGILGIGIGGTPEKAMLMAKKVLMQDIN 177 (440)
Q Consensus 133 ~~fv~e~V~~aG~~~CP-P~~vGVGIGGt~d~a~~LaK~Al~r~~~ 177 (440)
.+-+++.|.+. .| ++-+|||+|-|+.+|..+|.++|= .+|
T Consensus 69 ~~~i~e~I~n~----~PV~ls~GIG~g~TP~eA~~~At~~Le-~~g 109 (254)
T PRK02240 69 HARIQESIRNR----YPVTVSMGIGTAETPYEAQKLATEALQ-EAG 109 (254)
T ss_pred HHHHHHHHHhc----CCCceEEEEEecCCHHHHHHHHHHHHH-Hhc
Confidence 34455556654 33 678999999999999999998853 355
No 44
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=24.91 E-value=71 Score=27.50 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=20.6
Q ss_pred hhHHHHHHHhCceEEEecccCCHHHHHHHH
Q psy3775 363 HFTNLILEKIGLIAMIGKAERSDKIIKLIK 392 (440)
Q Consensus 363 ~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~ 392 (440)
+|+...--.+.-.++|||.|+++.+++.+.
T Consensus 7 ~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~ 36 (95)
T TIGR00253 7 RHLRGKAHHLKPVVLVGKNGLTEGVIKEIE 36 (95)
T ss_pred HHHHHHhCCCCCeEEECCCCCCHHHHHHHH
Confidence 344444444567899999999997775543
No 45
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=24.84 E-value=90 Score=33.14 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=64.8
Q ss_pred CCCCHHHHhcCCCCCEEEEeEEEE-------eeehHHHHHHHHHHHcCCCCCcccCC-CeEEEeCcCCCCCCcceeeccc
Q psy3775 284 NTLTKKEVSSWRSGEILLLNGKIL-------TGRDAAHNRIQYMLSKGEKIPVNFNN-RVIYYVGPINPVRNEVIGPAGP 355 (440)
Q Consensus 284 ~p~~~e~v~~L~vGD~V~LsG~i~-------taRDaaH~rl~e~l~~g~~lP~dl~g-~~iyh~GP~~~~~g~~igs~GP 355 (440)
+|.+.+.++.|+ .+-+++=+.+. .+|=+--..|++...+.-..+ +|+| +++.++||+....+ .+-++.=
T Consensus 129 ~~~tq~n~~~l~-~~g~~~I~p~~~~~a~~g~g~~~e~~~Iv~~~~~~~~~~-~l~gk~Vlit~G~t~E~id-pvr~itn 205 (392)
T COG0452 129 HPATQENLQRLK-SEGVLFIEPIEGELADVGDGRLAEPEEIVEAALALLKTP-DLKGKKVLITAGPTREYID-PVRFISN 205 (392)
T ss_pred CHHHHHHHHHHH-HCCcEEECcccccccccccccCCCHHHHHHHHHhhcccc-cccCcEEEecCCCCccCCc-cceeeec
Confidence 378888888888 66666666544 245445555666555544445 8888 56777899875443 3334554
Q ss_pred cccccchhhHHHHHHHhCceEEEecc
Q psy3775 356 TTASRMDHFTNLILEKIGLIAMIGKA 381 (440)
Q Consensus 356 TTS~RMd~y~~~~l~~~Gv~~~IGKG 381 (440)
-.|+||+-+........|..+.+-.|
T Consensus 206 ~ssGk~g~alA~a~~~~GA~V~lv~g 231 (392)
T COG0452 206 RSSGKMGFALAAAAKRRGASVTLVSG 231 (392)
T ss_pred cccccccHHHHHHHHHcCCceEEecC
Confidence 55999998777777778998888877
No 46
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.64 E-value=2e+02 Score=29.56 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhhhcCCC-CCCCceeEEEEcCCH-HHHHHHHHHHhcccCccc
Q psy3775 130 DSLVDWIMKTVPTMGAG-WCPPGILGIGIGGTP-EKAMLMAKKVLMQDINMN 179 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~-~CPP~~vGVGIGGt~-d~a~~LaK~Al~r~~~~~ 179 (440)
+.+++.+.+.|.++..+ .++|....|=+|-.. ...+.-.|....+.+|++
T Consensus 12 ~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~ 63 (296)
T PRK14188 12 ADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMA 63 (296)
T ss_pred HHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCE
Confidence 56888888888876443 589988899999874 455566677778889975
No 47
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.22 E-value=2.3e+02 Score=29.00 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCCH-HHHHHHHHHHhcccCcccchhccCC-ChhHHHHHHHHHHHHHhcCCc
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTP-EKAMLMAKKVLMQDINMNSIIKNGP-KNKIEELRLELFNKINSLGIG 207 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt~-d~a~~LaK~Al~r~~~~~~~~~~~~-~~~~a~lE~eLle~iN~lGIG 207 (440)
+.+++.+.+.|.++..+.++|....|=+|... ...+.-+|....+.+|++.-.-+=| +-. |++|++.|++|.--
T Consensus 11 ~~i~~~ik~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t----~~~l~~~I~~lN~d 86 (282)
T PRK14182 11 AKVKGEVATEVRALAARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTT----QAELLALIARLNAD 86 (282)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHhCC
Confidence 46788888888777555689988888898874 4555667777788898653211111 112 44566666665544
Q ss_pred cC
Q psy3775 208 AQ 209 (440)
Q Consensus 208 p~ 209 (440)
+.
T Consensus 87 ~~ 88 (282)
T PRK14182 87 PA 88 (282)
T ss_pred CC
Confidence 43
No 48
>PRK06788 flagellar motor switch protein; Validated
Probab=23.90 E-value=1e+02 Score=27.64 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=34.2
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPIN 343 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~ 343 (440)
-++-.|+-+|++||+|-|+- .-++++-+.+.|..+|++=|..
T Consensus 46 ~ltl~DlL~L~vGDVI~Ldk-----------------~~~dpv~v~Vng~~~f~G~~Gv 87 (119)
T PRK06788 46 SITLGDVKQLKVGDVLEVEK-----------------NLGHKVDVYLSNMKVGIGEAIV 87 (119)
T ss_pred eecHHHHhCCCCCCEEEeCC-----------------cCCCCEEEEECCEEEEEEEEEE
Confidence 46789999999999999972 1246778899999999996654
No 49
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=23.89 E-value=88 Score=27.96 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=26.8
Q ss_pred EEEEEeCceeeecCCCccHHHHHHHHHHHhhc
Q psy3775 36 NVFLKIGMNVRFKGFNGSIHDVINEGVRRGYT 67 (440)
Q Consensus 36 ~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~ 67 (440)
.+|+|+|....+-| .+..+|-.+||++|..
T Consensus 2 r~~iE~GmG~DlhG--qD~TkAA~RAv~DAI~ 31 (113)
T PF09585_consen 2 RLFIEMGMGNDLHG--QDYTKAAVRAVRDAIS 31 (113)
T ss_pred eEEEEecccccccC--CcHHHHHHHHHHHHHh
Confidence 48999999999987 5789999999999988
No 50
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.87 E-value=2.4e+02 Score=28.87 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhhhcCCC-CCCCceeEEEEcCC-HHHHHHHHHHHhcccCcccchhcc-CCChhHHHHHHHHHHHHHhcC
Q psy3775 130 DSLVDWIMKTVPTMGAG-WCPPGILGIGIGGT-PEKAMLMAKKVLMQDINMNSIIKN-GPKNKIEELRLELFNKINSLG 205 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~-~CPP~~vGVGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~-~~~~~~a~lE~eLle~iN~lG 205 (440)
+.+++.+.+.+.++..+ .++|....|=+|.. +...+.-+|...++.+|++.-.-+ .++-. |+||++.|++|.
T Consensus 11 ~~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN 85 (282)
T PRK14180 11 KDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTT----ESELLELIDQLN 85 (282)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHh
Confidence 46788888888877544 58998999999987 456667777777888886431111 12222 445566666654
No 51
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=23.35 E-value=94 Score=27.92 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=26.8
Q ss_pred EEEEEeCceeeecCCCccHHHHHHHHHHHhhc
Q psy3775 36 NVFLKIGMNVRFKGFNGSIHDVINEGVRRGYT 67 (440)
Q Consensus 36 ~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~ 67 (440)
.+|+|+|....+-| .+..+|-.+|||+|..
T Consensus 2 rl~iEmGmG~DlhG--qD~TkAA~RAvrDAI~ 31 (116)
T TIGR02058 2 ILFIEMGMGVDQHG--QNITKAAMRAVRNAIA 31 (116)
T ss_pred eEEEEecccccccC--ccHHHHHHHHHHHHHh
Confidence 48999999999987 5789999999999987
No 52
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.99 E-value=2e+02 Score=29.69 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=51.0
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCCHH-HHHHHHHHHhcccCcccchhccCCChhHHHHHHHHHHHHHhcCCcc
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPE-KAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGA 208 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt~d-~a~~LaK~Al~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp 208 (440)
+.+++.+.+.+.++..+.+.|....|=+|...+ ..+.-.|+...+.+|++.-..+=|.. --|++|++.|++|+=-|
T Consensus 14 ~~i~~~lk~~i~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~t~~~l~~~I~~lN~D~ 90 (301)
T PRK14194 14 ARVLAQVREDVRTLKAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPAD---TSQARLLALIAELNADP 90 (301)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHcCCC
Confidence 568888888888886666899888999998854 45566676778888865321111111 12556777777765544
Q ss_pred C
Q psy3775 209 Q 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 91 ~ 91 (301)
T PRK14194 91 S 91 (301)
T ss_pred C
Confidence 4
No 53
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=22.75 E-value=1.1e+02 Score=27.66 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=34.4
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPIN 343 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~ 343 (440)
.++-.|+-+|++||+|-|+- ...+++.+...|..+|++=|..
T Consensus 63 ~ltl~dlL~L~~GDVI~Ld~-----------------~~ddpv~v~Vng~~~f~G~~G~ 104 (127)
T PRK08983 63 FISIRNLLQLNQGSVVELDR-----------------VAGEPLDVMVNGTLIAHGEVVV 104 (127)
T ss_pred cccHHHHhCCCCCCEEEeCC-----------------CCCCCEEEEECCEEEEEEEEEE
Confidence 57889999999999999961 2246788999999999996654
No 54
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=22.61 E-value=84 Score=31.80 Aligned_cols=42 Identities=14% Similarity=0.306 Sum_probs=34.6
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPIN 343 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~ 343 (440)
.++-.|+-+|++||++-|.- ...+++++...|+.+|++=|..
T Consensus 265 ~i~l~dll~L~~GDVI~L~~-----------------~~~~~v~v~v~g~~~f~g~~G~ 306 (320)
T TIGR01397 265 EVSLRQLLNLQVGDVIPLNT-----------------DMPEEVSLRVGGRPKFRAQPGV 306 (320)
T ss_pred eeEHHHHhCCCCCCEEEeCC-----------------CCCCcEEEEECCEEEEEEEEEE
Confidence 56789999999999999961 2347788999999999996654
No 55
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=22.18 E-value=1.4e+02 Score=26.31 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=30.2
Q ss_pred HHHhcCCCCCEEEEeEEEE---eeehHHHHHHH---HHHHcCCCCCcccC
Q psy3775 289 KEVSSWRSGEILLLNGKIL---TGRDAAHNRIQ---YMLSKGEKIPVNFN 332 (440)
Q Consensus 289 e~v~~L~vGD~V~LsG~i~---taRDaaH~rl~---e~l~~g~~lP~dl~ 332 (440)
-..-+++.|+.|..|=.+| -.||++.+++. .+-..+.+.|||-|
T Consensus 54 ~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~m~DPrm~~~~~~mPFDgk 103 (103)
T PF07237_consen 54 PRAVKAKPDETVVFSWIEWPSKATRDAANAKMMADPRMQEMDNEMPFDGK 103 (103)
T ss_dssp HHHTT--TTEEEEEEEEEESSHHHHHHHHHHHHCSHHHHHTTSS-SS-TT
T ss_pred HHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhhcCcCcCCCCCCCCCCCC
Confidence 4566899999999999998 67899999987 33333347888743
No 56
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.96 E-value=2.5e+02 Score=28.78 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=51.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCCH-HHHHHHHHHHhcccCcccchhccC-CChhHHHHHHHHHHHHHhcCCc
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTP-EKAMLMAKKVLMQDINMNSIIKNG-PKNKIEELRLELFNKINSLGIG 207 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt~-d~a~~LaK~Al~r~~~~~~~~~~~-~~~~~a~lE~eLle~iN~lGIG 207 (440)
+.+++.+.+.|.++| ++|....|=+|-.. ...+.-.|....+.+|++.-.-.= ++-. |+||++.|++|+
T Consensus 10 ~~i~~~~k~~v~~l~---~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t----~~el~~~I~~lN-- 80 (287)
T PRK14181 10 EHILATIKENISASS---TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDAT----LSDILKLIHRLN-- 80 (287)
T ss_pred HHHHHHHHHHHHHhC---CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHh--
Confidence 568889999999985 78888888898874 455566777778888865422111 1222 556666666665
Q ss_pred cCCCCCceeEEEEEEe
Q psy3775 208 AQGMGGLSTVLDVKIM 223 (440)
Q Consensus 208 p~GlGG~tTaL~V~Ie 223 (440)
-+..+.++-|.
T Consensus 81 -----~d~~V~GIlvq 91 (287)
T PRK14181 81 -----NDPNIHGILVQ 91 (287)
T ss_pred -----CCCCCCeEEEc
Confidence 34445555554
No 57
>PRK00768 nadE NAD synthetase; Reviewed
Probab=21.82 E-value=99 Score=31.32 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCCHHHHH--HHHHHHh
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAM--LMAKKVL 172 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt~d~a~--~LaK~Al 172 (440)
+-+.+|+.+.+.++| +. -+-|||.|.-|.|. .|+++|+
T Consensus 23 ~~i~~~L~~~l~~~g---~~--g~VlGlSGGIDSav~a~L~~~A~ 62 (268)
T PRK00768 23 RRRVDFLKDYLKKSG---LK--SLVLGISGGQDSTLAGRLAQLAV 62 (268)
T ss_pred HHHHHHHHHHHHHcC---CC--eEEEECCCCHHHHHHHHHHHHHH
Confidence 468899999999998 43 23388889888766 5567775
No 58
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=21.67 E-value=73 Score=26.34 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=13.9
Q ss_pred hCceEEEecccCCHHHHHHHHh
Q psy3775 372 IGLIAMIGKAERSDKIIKLIKK 393 (440)
Q Consensus 372 ~Gv~~~IGKG~~~~~~~~a~~~ 393 (440)
+.-.+.|||.|+++.+++++.+
T Consensus 16 l~p~v~IGk~Glt~~vi~~i~~ 37 (84)
T PF01985_consen 16 LKPVVQIGKNGLTDGVIEEIDD 37 (84)
T ss_dssp C--SEEE-TTSS-HHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 3456899999999987766543
No 59
>KOG1111|consensus
Probab=21.67 E-value=99 Score=33.15 Aligned_cols=155 Identities=15% Similarity=0.307 Sum_probs=95.6
Q ss_pred eEEEEcCCHHHHHHHHHHHh--cccCcccchhccCCChhHHHHHHHHHHHHHhcCCccCCCCCceeEEE----------E
Q psy3775 153 LGIGIGGTPEKAMLMAKKVL--MQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLD----------V 220 (440)
Q Consensus 153 vGVGIGGt~d~a~~LaK~Al--~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~----------V 220 (440)
|-|--|-+.. +.||-++| .|.+|.+..-+.|.-.-.+.++..+..++=.+-+. -..-+.. +
T Consensus 90 I~ivhghs~f--S~lahe~l~hartMGlktVfTdHSlfGfad~~si~~n~ll~~sL~-----~id~~IcVshtskentvl 162 (426)
T KOG1111|consen 90 IEIVHGHSPF--SYLAHEALMHARTMGLKTVFTDHSLFGFADIGSILTNKLLPLSLA-----NIDRIICVSHTSKENTVL 162 (426)
T ss_pred eEEEecCChH--HHHHHHHHHHHHhcCceEEEeccccccccchhhhhhcceeeeeec-----CCCcEEEEeecCCCceEE
Confidence 4466666543 34567777 57788555556777777888888888754433221 1111222 2
Q ss_pred EEeecCcccccCcEEEeecccccc----eeE--EEE-------eCCCc---eecCCCCCCCCcccccccCCCceEEEEcC
Q psy3775 221 KIMMYPTHAASKPVAIIPNCAATR----HGH--IIL-------NGSGP---VFMKPPSLSNWPKIKFTTNNKKFHYVNLN 284 (440)
Q Consensus 221 ~Ie~~p~H~As~PVaV~~~C~a~R----~~~--~~i-------~~~g~---~~l~~~~~~~~p~~~~~~~~~~~~~i~l~ 284 (440)
+=...|-..++.|-||...=+-++ +-. +.| +..|. .++.|.--+..|++.+....+..+++.+
T Consensus 163 r~~L~p~kvsvIPnAv~~~~f~P~~~~~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~l- 241 (426)
T KOG1111|consen 163 RGALAPAKVSVIPNAVVTHTFTPDAADKPSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDL- 241 (426)
T ss_pred EeccCHhHeeeccceeeccccccCccccCCCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchH-
Confidence 233445667778988888766442 222 222 11222 2445555566777776553323677888
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKG 324 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g 324 (440)
+|++.++.-+|+|-+.|.+ -|.|+.+.+-+|
T Consensus 242 ---ee~lEk~~l~~rV~~lG~v------~h~~Vr~vl~~G 272 (426)
T KOG1111|consen 242 ---EEMLEKLFLQDRVVMLGTV------PHDRVRDVLVRG 272 (426)
T ss_pred ---HHHHHHhhccCceEEeccc------chHHHHHHHhcC
Confidence 9999999999999999986 477777755444
No 60
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.33 E-value=2.6e+02 Score=28.61 Aligned_cols=74 Identities=11% Similarity=0.209 Sum_probs=49.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCC-HHHHHHHHHHHhcccCcccchhccCCChhHHHHHHHHHHHHHhcCCcc
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGT-PEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGA 208 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~~~~~~~a~lE~eLle~iN~lGIGp 208 (440)
+.+++.+.+.|.++| ++|....|=+|-. ....+.-.|+...+.+|++.-.-+=|.. -=|+||++.|++|+=-+
T Consensus 10 ~~i~~~~~~~v~~lg---~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~ 83 (279)
T PRK14178 10 EKRLELLKEEIIESG---LYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGD---ATTRTVLERIRRLNEDP 83 (279)
T ss_pred HHHHHHHHHHHHHhC---CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCC
Confidence 568888889998885 8898888888877 4556677777788889965422111111 12557777777776554
Q ss_pred C
Q psy3775 209 Q 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 84 ~ 84 (279)
T PRK14178 84 D 84 (279)
T ss_pred C
Confidence 4
No 61
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=21.26 E-value=25 Score=35.74 Aligned_cols=15 Identities=47% Similarity=0.884 Sum_probs=11.4
Q ss_pred CCCcccccCCceEEE
Q psy3775 24 EKRPICQDTGIVNVF 38 (440)
Q Consensus 24 ~~~PlCQDTG~~~~f 38 (440)
+-+|+||.||+|+||
T Consensus 194 d~L~ic~~~giP~Vf 208 (275)
T PF03851_consen 194 DVLPICEKLGIPMVF 208 (275)
T ss_dssp HHHHHHHHHT--EEE
T ss_pred HHHHHHHHhCCCEEE
Confidence 347999999999999
No 62
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=21.16 E-value=76 Score=25.83 Aligned_cols=18 Identities=11% Similarity=0.338 Sum_probs=15.6
Q ss_pred HHHhcCCCCCEEEEeEEE
Q psy3775 289 KEVSSWRSGEILLLNGKI 306 (440)
Q Consensus 289 e~v~~L~vGD~V~LsG~i 306 (440)
.-+.+|++||.|.++|..
T Consensus 77 ~~L~~l~~Gd~v~i~gP~ 94 (99)
T PF00970_consen 77 RYLHQLKPGDEVEIRGPY 94 (99)
T ss_dssp HHHHTSCTTSEEEEEEEE
T ss_pred HHHHhCCCCCEEEEEEcc
Confidence 467999999999999963
No 63
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.14 E-value=1.1e+02 Score=31.24 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=48.7
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCC-HHHHHHHHHHHhcccCcccchhccC-CChhHHHHHHHHHHHHHhcCCc
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGT-PEKAMLMAKKVLMQDINMNSIIKNG-PKNKIEELRLELFNKINSLGIG 207 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~~-~~~~~a~lE~eLle~iN~lGIG 207 (440)
+.+++.+.+.|.++..+.+.|....|=+|-. +...+.-+|+...+.+|++.-.-+= ++-. |++|++.|++|.=-
T Consensus 11 ~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t----~~~l~~~I~~lN~D 86 (282)
T PRK14166 11 AKIKEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTT----QNELLALINTLNHD 86 (282)
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHhCC
Confidence 5677888888877755568998888888887 5566677788888889964211111 1122 34566666666543
Q ss_pred c
Q psy3775 208 A 208 (440)
Q Consensus 208 p 208 (440)
+
T Consensus 87 ~ 87 (282)
T PRK14166 87 D 87 (282)
T ss_pred C
Confidence 3
No 64
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=21.03 E-value=41 Score=26.94 Aligned_cols=44 Identities=9% Similarity=0.436 Sum_probs=24.2
Q ss_pred EeC-CCceecCCCCCCC--CcccccccCCCceEEEEcCCCCHHHHhcCCCCCEEEEe
Q psy3775 250 LNG-SGPVFMKPPSLSN--WPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLN 303 (440)
Q Consensus 250 i~~-~g~~~l~~~~~~~--~p~~~~~~~~~~~~~i~l~p~~~e~v~~L~vGD~V~Ls 303 (440)
|+. .+...|.|.|+.. ||.-+.+ +.+ ....+++.|++||.|.++
T Consensus 6 vd~~~~~iti~H~pIp~l~wpaMTM~--------F~v--~~~~~l~~l~~Gd~V~F~ 52 (70)
T PF11604_consen 6 VDPEAGTITISHEPIPELGWPAMTMD--------FPV--ADPVDLAGLKPGDKVRFT 52 (70)
T ss_dssp EETTTTEEEEEE--BCCCTB-SEEEE--------EE----TTSEESS-STT-EEEEE
T ss_pred EecCCCEEEEecCccccCCCCCeEEE--------EEc--CChhhhhcCCCCCEEEEE
Confidence 444 4557888888766 7776532 111 123477999999999876
No 65
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=21.02 E-value=93 Score=26.95 Aligned_cols=30 Identities=7% Similarity=0.226 Sum_probs=21.1
Q ss_pred hhHHHHHHHhCceEEEecccCCHHHHHHHH
Q psy3775 363 HFTNLILEKIGLIAMIGKAERSDKIIKLIK 392 (440)
Q Consensus 363 ~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~ 392 (440)
+|+..+--.+.-.++|||.|+++.+++.+.
T Consensus 9 ~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~ 38 (97)
T PRK10343 9 QHLKGLAHPLKPVVLLGSNGLTEGVLAEIE 38 (97)
T ss_pred HHHHHhcCCCCCeEEECCCCCCHHHHHHHH
Confidence 445444444567799999999998776554
No 66
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=20.88 E-value=86 Score=25.65 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=15.2
Q ss_pred HhcCCCCCEEEEeEEEE
Q psy3775 291 VSSWRSGEILLLNGKIL 307 (440)
Q Consensus 291 v~~L~vGD~V~LsG~i~ 307 (440)
...+++||+|.++|++-
T Consensus 42 ~~~~~~Gd~V~vtG~v~ 58 (78)
T cd04486 42 GADVAVGDLVRVTGTVT 58 (78)
T ss_pred CCCCCCCCEEEEEEEEE
Confidence 57899999999999874
No 67
>COG5342 Invasion protein B, involved in pathogenesis [General function prediction only]
Probab=20.82 E-value=38 Score=32.54 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=26.9
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNN 333 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g 333 (440)
|+++|.+..||.|+.+.++=+= .=++.-+.|++|+|
T Consensus 134 ~l~~~ll~~Lk~Gt~l~~~~~~-------------~~~~~v~i~v~LkG 169 (181)
T COG5342 134 PLDDELLAALKSGTTLTFTSTA-------------DQEQPVPIPVSLKG 169 (181)
T ss_pred eCCHHHHHHHhCCCeEEEEEec-------------cCCCCceeEEeccc
Confidence 8899999999999999887221 12333467788887
No 68
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=20.68 E-value=82 Score=33.19 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHhcCeEEEEccchH
Q psy3775 382 ERSDKIIKLIKKQKIAYLVAVGGA 405 (440)
Q Consensus 382 ~~~~~~~~a~~~~gavYl~~~GGa 405 (440)
.+.+++++.|+++.+++|+++||.
T Consensus 54 ~lpeetl~~~~~~DaiL~Gavg~P 77 (348)
T COG0473 54 PLPEETLESLKKADAILFGAVGGP 77 (348)
T ss_pred CCCHHHHHHHHhCCEEEEcccCCC
Confidence 479999999999999999999977
No 69
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=20.64 E-value=2e+02 Score=29.64 Aligned_cols=32 Identities=34% Similarity=0.572 Sum_probs=27.3
Q ss_pred cceeeccccccccchhhHHHHHHHhCceEEEeccc
Q psy3775 348 EVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAE 382 (440)
Q Consensus 348 ~~igs~GPTTS~RMd~y~~~~l~~~Gv~~~IGKG~ 382 (440)
+++..+||| .|++....+++++|+.--|=||-
T Consensus 120 dv~ip~G~t---~~~P~~~~~fq~LgipTkI~kG~ 151 (310)
T PTZ00135 120 DVVIPAGPT---GMDPSQTSFFQALGIATKIVKGQ 151 (310)
T ss_pred eEEEcCCCC---CCCcchhhHHHHcCCceEecCCe
Confidence 578899998 78988777888899999998884
No 70
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=20.57 E-value=3.2e+02 Score=25.09 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=55.3
Q ss_pred EEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCC----CCCcceeeccccccccchhhHHHHHHH--hCc
Q psy3775 301 LLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINP----VRNEVIGPAGPTTASRMDHFTNLILEK--IGL 374 (440)
Q Consensus 301 ~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~----~~g~~igs~GPTTS~RMd~y~~~~l~~--~Gv 374 (440)
..+..++|...++..- .+.+.+.. +..+.+..+|-.||..+ ..|...... | -+.-++.....+.++ .+.
T Consensus 49 ~~~~iiftS~~av~~~-~~~~~~~~--~~~~~~~~~~avG~~Ta~~l~~~g~~~~~~-~-~~~~~~~L~~~i~~~~~~~~ 123 (239)
T cd06578 49 EYDWLIFTSPNAVEAF-FEALEELG--LRALAGLKIAAVGPKTAEALREAGLTADFV-P-EEGDSEGLLELLELQDGKGK 123 (239)
T ss_pred CCCEEEEECHHHHHHH-HHHHHhhC--CccccCCEEEEECHHHHHHHHHcCCCceeC-C-CccCHHHHHHHHHhcCCCCC
Confidence 4566678888777543 34343322 45677888999999653 234322111 1 222345555555553 689
Q ss_pred eEEEecccCC-HHHHHHHHhcCeE
Q psy3775 375 IAMIGKAERS-DKIIKLIKKQKIA 397 (440)
Q Consensus 375 ~~~IGKG~~~-~~~~~a~~~~gav 397 (440)
++++..|+.. +...+.+++.|+-
T Consensus 124 ~il~~~g~~~~~~l~~~L~~~g~~ 147 (239)
T cd06578 124 RILRPRGGRAREDLAEALRERGAE 147 (239)
T ss_pred EEEEEcCcchhHHHHHHHHHCCCE
Confidence 9999999875 5677888776643
No 71
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.50 E-value=2.8e+02 Score=28.56 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhhhcCCC-CCCCceeEEEEcCC-HHHHHHHHHHHhcccCcccchhcc-CCChhHHHHHHHHHHHHHhcCC
Q psy3775 130 DSLVDWIMKTVPTMGAG-WCPPGILGIGIGGT-PEKAMLMAKKVLMQDINMNSIIKN-GPKNKIEELRLELFNKINSLGI 206 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~-~CPP~~vGVGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~-~~~~~~a~lE~eLle~iN~lGI 206 (440)
+.+++.+.+.|.++..+ .++|....|=+|-. ....+.-.|....+.+|++.-.-. .++-. |++|++.|++|.-
T Consensus 11 ~~i~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN~ 86 (295)
T PRK14174 11 LDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTT----EEHLLKKIEDLNN 86 (295)
T ss_pred HHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHhC
Confidence 46788888888776433 48999999999987 455566777777888886532111 12223 3455555555544
Q ss_pred cc
Q psy3775 207 GA 208 (440)
Q Consensus 207 Gp 208 (440)
-+
T Consensus 87 D~ 88 (295)
T PRK14174 87 DP 88 (295)
T ss_pred CC
Confidence 34
No 72
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.48 E-value=3.1e+02 Score=28.25 Aligned_cols=51 Identities=12% Similarity=0.280 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCCH-HHHHHHHHHHhcccCcccc
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTP-EKAMLMAKKVLMQDINMNS 180 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt~-d~a~~LaK~Al~r~~~~~~ 180 (440)
+.+++.+.+.|.++....+.|....|=+|-.. ...+.-+|+..++.+|++.
T Consensus 12 ~~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~ 63 (297)
T PRK14167 12 AQIRDDLTDAIETLEDAGVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEA 63 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 46777777777766555588988888888874 4555667777788888653
No 73
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=20.39 E-value=1.1e+02 Score=33.92 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.6
Q ss_pred HHHHHhCceEEEeccc--CCHHHHHHHHhcCe
Q psy3775 367 LILEKIGLIAMIGKAE--RSDKIIKLIKKQKI 396 (440)
Q Consensus 367 ~~l~~~Gv~~~IGKG~--~~~~~~~a~~~~ga 396 (440)
+...+.|++++|==|| |++|++++|.+||-
T Consensus 468 e~aa~aGi~aIiQPGGSiRD~evI~aa~e~gi 499 (511)
T TIGR00355 468 EEAAAAGITCIIQPGGSMRDEDSIWAADEHGI 499 (511)
T ss_pred HHHHHcCCEEEEcCCCCCCcHHHHHHHHHhCC
Confidence 4566689999998887 68899999999984
No 74
>PF13101 DUF3945: Protein of unknown function (DUF3945)
Probab=20.25 E-value=64 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=19.3
Q ss_pred CCCHHHHhcCCCCCEEEEeEE
Q psy3775 285 TLTKKEVSSWRSGEILLLNGK 305 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~ 305 (440)
.||+++...|+.|..|+|.|-
T Consensus 34 ~Ls~~q~~~L~~G~~v~le~m 54 (59)
T PF13101_consen 34 ELSPEQKEDLREGKPVYLEGM 54 (59)
T ss_pred cCCHHHHHHHHCCCeEEEeee
Confidence 678999999999999999984
No 75
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.07 E-value=2.5e+02 Score=28.80 Aligned_cols=76 Identities=12% Similarity=0.207 Sum_probs=49.4
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCC-HHHHHHHHHHHhcccCcccchhcc-CCChhHHHHHHHHHHHHHhcCCc
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGT-PEKAMLMAKKVLMQDINMNSIIKN-GPKNKIEELRLELFNKINSLGIG 207 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~-~~~~~~a~lE~eLle~iN~lGIG 207 (440)
+.+++.+.+.+.++..+.++|....|=+|-. ....+.-+|....+.+|++.-..+ .++- -|+||++.|++|.=-
T Consensus 12 ~~i~~~ik~~i~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D 87 (284)
T PRK14170 12 KEIQEKVTREVAELVKEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENV----TEEKLLSVVEELNED 87 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCC
Confidence 5688888888887655568898888888887 445556677777888886532111 1122 255666777776544
Q ss_pred cC
Q psy3775 208 AQ 209 (440)
Q Consensus 208 p~ 209 (440)
+.
T Consensus 88 ~~ 89 (284)
T PRK14170 88 KT 89 (284)
T ss_pred CC
Confidence 43
Done!