Query psy3775
Match_columns 440
No_of_seqs 284 out of 1151
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:00:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2isb_A Fumarase, FUM-1; NP_069 100.0 9.6E-67 3.3E-71 484.9 14.6 161 278-440 16-179 (192)
2 2qv6_A MJ0145, GTP cyclohydrol 65.7 3.7 0.00013 40.0 3.3 23 150-172 211-233 (268)
3 3fiu_A NH(3)-dependent NAD(+) 34.9 69 0.0023 30.1 6.5 47 122-173 3-54 (249)
4 1o6a_A Putative flagellar moto 28.1 21 0.00071 29.1 1.4 42 285-343 31-72 (96)
5 1ed7_A Chitinase A1, (CHBD-CHI 26.7 12 0.00041 26.6 -0.3 20 293-312 7-26 (45)
6 2pie_A E3 ubiquitin-protein li 24.8 35 0.0012 29.1 2.3 52 241-304 51-102 (138)
7 3c8l_A FTSZ-like protein of un 24.6 93 0.0032 26.9 4.9 31 35-67 5-35 (122)
8 2csw_A Ubiquitin ligase protei 24.4 41 0.0014 29.0 2.7 52 241-304 59-110 (145)
9 3gqs_A Adenylate cyclase-like 23.6 34 0.0012 27.7 1.9 66 232-311 36-101 (106)
10 1lgp_A Cell cycle checkpoint p 20.8 42 0.0014 27.5 1.9 52 240-304 43-95 (116)
11 1o9y_A HRCQ2; secretory protei 20.5 33 0.0011 27.3 1.1 41 285-342 27-67 (84)
12 1xng_A NH(3)-dependent NAD(+) 20.5 2.8E+02 0.0095 25.8 7.8 38 130-172 10-49 (268)
13 1g6g_A Protein kinase RAD53; b 20.4 41 0.0014 28.2 1.8 51 241-304 56-106 (127)
No 1
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=100.00 E-value=9.6e-67 Score=484.93 Aligned_cols=161 Identities=34% Similarity=0.605 Sum_probs=155.7
Q ss_pred eEEEEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCC-cceeecccc
Q psy3775 278 FHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRN-EVIGPAGPT 356 (440)
Q Consensus 278 ~~~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g-~~igs~GPT 356 (440)
.+++++ |+++|++++|++||+|||||+||||||+||+||+|+|++|++||+||+|++||||||++++++ +++||+|||
T Consensus 16 ~~~l~~-Plt~e~v~~L~vGD~V~LsG~i~taRDaAHkRl~e~l~~Ge~lP~dl~g~~Iyy~GP~~~k~~~~~igs~GPT 94 (192)
T 2isb_A 16 EYELRT-PLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHCGPLVKKNDEWRVVSAGPT 94 (192)
T ss_dssp EEEEES-SCCHHHHHHCCTTCEEEEEEEEEECCHHHHHHHHHHHHHTCCCSSCCTTCEEECBCCEEEESSSEEEEECCBC
T ss_pred EEEeCC-CCCHHHHhhCCCCCEEEEEEEEEEEhHHHHHHHHHHHHcCCCCCcCCCCCEEEEecCCCCCCCCcEeeEECCC
Confidence 456787 999999999999999999999999999999999999999999999999999999999976665 999999999
Q ss_pred ccccchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCc-eeEEEEEEe
Q psy3775 357 TASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVE 435 (440)
Q Consensus 357 TS~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~-EAi~~leVe 435 (440)
||+|||+|+|.|++++|+++|||||+||+++++||++| +|||+++||||||+|++||++++|+|+|||| ||+|+||||
T Consensus 95 TS~RMd~y~~~ll~~~G~~~mIGKG~r~~~v~~a~k~~-avYl~avGGaaalla~~Ik~v~~v~~~dLGMpEAi~~leVe 173 (192)
T 2isb_A 95 TSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRGK-AAYFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVE 173 (192)
T ss_dssp BGGGGTTTHHHHHHHCSCEEEEEBSCCCHHHHHHHTTT-EEEEEECSCSSTTGGGGEEEEEEEECGGGCTTTSEEEEEEE
T ss_pred chhhhhhhHHHHHHhCCcEEEEECCCCCHHHHHHHHhC-eEEEEcCcHHHHHHHhheeEEEEEeeccCCCccEEEEEEEE
Confidence 99999999999999889999999999999999999999 9999999999999999999999999999997 999999999
Q ss_pred cc-CCC
Q psy3775 436 NM-PVT 440 (440)
Q Consensus 436 ~f-P~~ 440 (440)
|| |+|
T Consensus 174 dfGP~i 179 (192)
T 2isb_A 174 RFGPCI 179 (192)
T ss_dssp EEEEEE
T ss_pred eeeeEE
Confidence 99 985
No 2
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=65.66 E-value=3.7 Score=40.03 Aligned_cols=23 Identities=43% Similarity=0.404 Sum_probs=21.0
Q ss_pred CceeEEEEcCCHHHHHHHHHHHh
Q psy3775 150 PGILGIGIGGTPEKAMLMAKKVL 172 (440)
Q Consensus 150 P~~vGVGIGGt~d~a~~LaK~Al 172 (440)
.+-+|||+|.|+.+|...|++||
T Consensus 211 ~lkvGIGiG~TA~~Ae~~A~~AL 233 (268)
T 2qv6_A 211 ELKAGIGIGRTAEDASNLADIGL 233 (268)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEeeccCCCHHHHHHHHHHHH
Confidence 35689999999999999999998
No 3
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=34.94 E-value=69 Score=30.09 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=32.1
Q ss_pred cccccCCc---hhHHHHHHHHhhhcCCCCCCCceeEEEEcCCHHHHH--HHHHHHhc
Q psy3775 122 KFAMLNPS---DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAM--LMAKKVLM 173 (440)
Q Consensus 122 ~l~ml~P~---~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt~d~a~--~LaK~Al~ 173 (440)
.+.|+.|. +.+.+|+.+.|.+.|. . -+.||+.|..|.+. .|+++++.
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~~v~~~~~---~--~vvv~lSGGiDSsv~a~l~~~~~~ 54 (249)
T 3fiu_A 3 IVKDFSPKEYSQKLVNWLSDSCMNYPA---E--GFVIGLSGGIDSAVAASLAVKTGL 54 (249)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTTTC---S--EEEEECCSSHHHHHHHHHHHHTTS
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhCC---C--CEEEEecCcHHHHHHHHHHHHhCC
Confidence 34466665 4689999999999883 3 46688999988765 45556553
No 4
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=28.10 E-value=21 Score=29.14 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=33.5
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPIN 343 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~ 343 (440)
.++-.|+.+|++||++-|+- .-++++.+...|+.+|++=+..
T Consensus 31 ~ltl~ell~L~~GdVI~Ld~-----------------~~~~~v~v~v~g~~i~~G~~g~ 72 (96)
T 1o6a_A 31 RMTLKRVLEMIHGSIIELDK-----------------LTGEPVDILVNGKLIARGEVVV 72 (96)
T ss_dssp EEEHHHHHHCCTTCEEEEEE-----------------ETTCCEEEEETTEEEEEEEEEE
T ss_pred EeEHHHHhCCCCCCEEEeCC-----------------CCCCcEEEEECCEEEEEEEEEE
Confidence 45669999999999999982 1247788899999999995543
No 5
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=26.73 E-value=12 Score=26.60 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=17.2
Q ss_pred cCCCCCEEEEeEEEEeeehH
Q psy3775 293 SWRSGEILLLNGKILTGRDA 312 (440)
Q Consensus 293 ~L~vGD~V~LsG~i~taRDa 312 (440)
.+++||+|.-.|..|.++++
T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~ 26 (45)
T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQP 26 (45)
T ss_dssp EECTTCCEEETTEEECBCSC
T ss_pred eEcCCCEEEECCeEEEEEec
Confidence 56899999999999987754
No 6
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=24.82 E-value=35 Score=29.10 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=34.2
Q ss_pred cccceeEEEEeCCCceecCCCCCCCCcccccccCCCceEEEEcCCCCHHHHhcCCCCCEEEEeE
Q psy3775 241 AATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNG 304 (440)
Q Consensus 241 ~a~R~~~~~i~~~g~~~l~~~~~~~~p~~~~~~~~~~~~~i~l~p~~~e~v~~L~vGD~V~LsG 304 (440)
-+.+|+.++.+.+|.|.|... .+.|+..+|=.++...+-..|+.||+|.|-.
T Consensus 51 VSr~Ha~i~~~~~g~~~l~Dl------------~S~NGT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 51 ISRNHCVLKQNPEGQWTIMDN------------KSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SCSSCEEEEECTTSCEEEEEC------------SCSSCEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CChhHeEEEEcCCCcEEEEEC------------CCCCCeEECCEEcCCCCcEECCCCCEEEECC
Confidence 467888888877777765432 1234555554455555556799999999865
No 7
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=24.61 E-value=93 Score=26.94 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=28.1
Q ss_pred eEEEEEeCceeeecCCCccHHHHHHHHHHHhhc
Q psy3775 35 VNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYT 67 (440)
Q Consensus 35 ~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~ 67 (440)
-.+|+|+|....+-| .+..+|-.+|||+|..
T Consensus 5 kr~~iEmGmG~DlhG--qD~TkAA~RAvrDAI~ 35 (122)
T 3c8l_A 5 KRLIIEMGMGIDQHG--QEPTIAASRAVRNAIA 35 (122)
T ss_dssp EEEEEEEEEEEESSS--SCHHHHHHHHHHHHHT
T ss_pred EEEEEEecccccccC--ccHHHHHHHHHHHHHh
Confidence 479999999999987 5799999999999998
No 8
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=24.38 E-value=41 Score=28.99 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=35.0
Q ss_pred cccceeEEEEeCCCceecCCCCCCCCcccccccCCCceEEEEcCCCCHHHHhcCCCCCEEEEeE
Q psy3775 241 AATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNG 304 (440)
Q Consensus 241 ~a~R~~~~~i~~~g~~~l~~~~~~~~p~~~~~~~~~~~~~i~l~p~~~e~v~~L~vGD~V~LsG 304 (440)
-+-+|+.++.+.+|.|.|... .+.|+..||=.++...+-..|+.||+|.|-.
T Consensus 59 VSr~Ha~i~~~~~g~~~l~Dl------------~S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 59 ISRNHCVLKQNPEGQWTIMDN------------KSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp SCTTCEEEEECTTSCEEEEBS------------SCSSCEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred CChhHeEEEEcCCCeEEEEEC------------CCCCCeEECCEECCCCccEECCCCCEEEECC
Confidence 367788888877777765542 1234555665566655556799999998864
No 9
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=23.56 E-value=34 Score=27.71 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=40.0
Q ss_pred CcEEEeecccccceeEEEEeCCCceecCCCCCCCCcccccccCCCceEEEEcCCCCHHHHhcCCCCCEEEEeEEEEeeeh
Q psy3775 232 KPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRD 311 (440)
Q Consensus 232 ~PVaV~~~C~a~R~~~~~i~~~g~~~l~~~~~~~~p~~~~~~~~~~~~~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRD 311 (440)
+-+.+.=..-+.+|+.++.+++|.|.+.... +.++..+|=.++.. -..|+.||+|.|-.+.+.-.|
T Consensus 36 ~di~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~------------S~nGt~vng~~i~~--~~~L~~Gd~i~~G~~~~~~~~ 101 (106)
T 3gqs_A 36 ADIVLSDMSISRQHAKIIIGNDNSVLIEDLG------------SKNGVIVEGRKIEH--QSTLSANQVVALGTTLFLLVD 101 (106)
T ss_dssp CSEECCCTTSCSSCEEEEECTTSCEEEEECS------------CSSCCEETTEECSS--EEECCTTCCEEETTEEEEEEE
T ss_pred CCEEeCCCCcchhhcEEEECCCCcEEEEECc------------CCCCeEECCEECCC--CeECCCCCEEEECCEEEEEEc
Confidence 3344433345778999988877877654331 12333344323333 137999999999888876544
No 10
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=20.80 E-value=42 Score=27.47 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=33.4
Q ss_pred ccccceeEEEEeC-CCceecCCCCCCCCcccccccCCCceEEEEcCCCCHHHHhcCCCCCEEEEeE
Q psy3775 240 CAATRHGHIILNG-SGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNG 304 (440)
Q Consensus 240 C~a~R~~~~~i~~-~g~~~l~~~~~~~~p~~~~~~~~~~~~~i~l~p~~~e~v~~L~vGD~V~LsG 304 (440)
--+.+|+.++.+. +|.|.|... +.++..+|=.++...+-..|+.||+|.|-.
T Consensus 43 ~vSr~Ha~i~~~~~~~~~~l~D~-------------S~NGt~vng~~l~~~~~~~L~~GD~i~~G~ 95 (116)
T 1lgp_A 43 LVSGDHCRIVVDEKSGQVTLEDT-------------STSGTVINKLKVVKKQTCPLQTGDVIYLVY 95 (116)
T ss_dssp TSCTTCEEEEECTTTCCEEEEEC-------------SSSCCCCCCCCCCCSSCCCCCTTCEEEEEC
T ss_pred CCChhHeEEEEECCCCeEEEEEC-------------CcCCcEECCEEcCCCCcEECCCCCEEEEec
Confidence 3478889888874 677765541 123333444455555556899999999864
No 11
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=20.49 E-value=33 Score=27.25 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=32.2
Q ss_pred CCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcC
Q psy3775 285 TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI 342 (440)
Q Consensus 285 p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~ 342 (440)
.++-.|+.+|++||++-|+- ..++++.+...|+.+|++=+.
T Consensus 27 ~itl~ell~L~~GdVi~Ld~-----------------~~~e~v~i~vng~~~~~ge~g 67 (84)
T 1o9y_A 27 RLTLAELRRLDAGTILEVTG-----------------ISPGHATLCHGEQVVAEGELV 67 (84)
T ss_dssp EEEHHHHHTCCTTCEEEECS-----------------SCTTEEEEEETTEEEEEEEEE
T ss_pred eeEHHHHhcCCCCCEEEeCC-----------------CCCCCEEEEECCEEEEEEEEE
Confidence 45669999999999999971 124677788999999999554
No 12
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=20.49 E-value=2.8e+02 Score=25.78 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCCHHHHH--HHHHHHh
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAM--LMAKKVL 172 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt~d~a~--~LaK~Al 172 (440)
+.+.+|+.+.+.+.|.. -+.||+.|..|.++ .++++++
T Consensus 10 ~~l~~~l~~~v~~~~~~-----~vvv~lSGGiDSsv~~~l~~~~~ 49 (268)
T 1xng_A 10 VYLCDFLEKEVQKRGFK-----KVVYGLSGGLDSAVVGVLCQKVF 49 (268)
T ss_dssp HHHHHHHHHHHHHTTCC-----CEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-----CEEEEccCcHHHHHHHHHHHHhC
Confidence 35888888888887633 37788999988765 5566665
No 13
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=20.39 E-value=41 Score=28.22 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=33.0
Q ss_pred cccceeEEEEeCCCceecCCCCCCCCcccccccCCCceEEEEcCCCCHHHHhcCCCCCEEEEeE
Q psy3775 241 AATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNG 304 (440)
Q Consensus 241 ~a~R~~~~~i~~~g~~~l~~~~~~~~p~~~~~~~~~~~~~i~l~p~~~e~v~~L~vGD~V~LsG 304 (440)
-+.+|+.+..+.+|.|.++.- +.++..+|=.++...+-..|+.||+|.|-.
T Consensus 56 vSr~Ha~i~~~~~g~~~l~Dl-------------S~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~ 106 (127)
T 1g6g_A 56 LSNKHFQILLGEDGNLLLNDI-------------STNGTWLNGQKVEKNSNQLLSQGDEITVGV 106 (127)
T ss_dssp SCSSCEEEEECTTSCEEEEEC-------------CSSCCEETTEECCTTCCEECCTTCEEEECT
T ss_pred CChhHeEEEECCCCcEEEEEC-------------CcCCeEECCEEcCCCCeEEcCCCCEEEECC
Confidence 467888888877777765432 123334444345554556799999999865
Done!