Query psy3775
Match_columns 440
No_of_seqs 284 out of 1151
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 17:00:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3775.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3775hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2isba1 c.8.9.1 (A:2-179) Fuma 100.0 1.9E-65 1.4E-69 470.7 15.0 161 278-440 3-166 (178)
2 d2okqa1 d.58.4.18 (A:1-117) Hy 39.1 17 0.0012 29.4 4.7 44 289-332 55-104 (117)
3 d1o6aa_ b.139.1.1 (A:) Putativ 33.0 7.2 0.00053 29.2 1.4 39 286-341 23-61 (87)
4 d1ed7a_ b.72.2.1 (A:) Chitin-b 31.6 5.8 0.00042 27.0 0.5 18 293-310 7-24 (45)
5 g3bzy.1 d.367.1.1 (A:246-262,B 30.9 3.6 0.00026 32.5 -0.8 45 18-67 50-97 (100)
6 d2cnda1 b.43.4.2 (A:11-124) Ni 26.2 15 0.0011 27.9 2.2 19 288-306 88-106 (114)
7 d1jo0a_ d.68.4.1 (A:) YhbY hom 25.7 21 0.0015 27.3 3.0 47 358-404 4-54 (97)
8 d1eeja1 c.47.1.9 (A:61-216) Di 24.9 25 0.0019 28.1 3.6 45 14-65 107-153 (156)
9 d1rutx4 g.39.1.3 (X:114-146) L 24.9 19 0.0014 22.6 2.0 19 293-311 8-27 (33)
10 d2bmwa1 b.43.4.2 (A:9-141) Fer 23.0 19 0.0014 28.6 2.3 15 291-305 113-127 (133)
11 d1ep3b1 b.43.4.2 (B:2-102) Dih 22.9 24 0.0017 26.1 2.8 19 288-306 79-97 (101)
12 d1fnda1 b.43.4.2 (A:19-154) Fe 22.6 19 0.0014 28.9 2.3 15 291-305 118-132 (136)
13 d1xnga1 c.26.2.1 (A:3-257) NH3 21.9 1.1E+02 0.008 26.4 7.6 39 130-173 8-48 (255)
14 d1g8ma2 c.97.1.4 (A:201-593) A 21.7 16 0.0012 35.0 1.8 30 367-396 350-381 (393)
15 d1o60a_ c.1.10.4 (A:) 3-deoxy- 21.5 30 0.0022 28.7 3.5 24 148-171 16-40 (281)
16 d1fdra1 b.43.4.2 (A:2-100) Fer 20.8 19 0.0014 27.0 1.8 16 289-304 76-91 (99)
No 1
>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=100.00 E-value=1.9e-65 Score=470.74 Aligned_cols=161 Identities=34% Similarity=0.606 Sum_probs=153.9
Q ss_pred eEEEEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCC-Ccceeecccc
Q psy3775 278 FHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVR-NEVIGPAGPT 356 (440)
Q Consensus 278 ~~~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~-g~~igs~GPT 356 (440)
.++|++ |+++|++++|++||+|||||+||||||+|||||+|+|++|++||+||+|++||||||+++++ +..++|+|||
T Consensus 3 ~~~L~t-Plt~e~i~~L~vGD~V~LsG~i~taRD~AHkrl~e~l~~g~~lP~dl~g~~iyy~GP~~~~~~~~~~gs~GPT 81 (178)
T d2isba1 3 EYELRT-PLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHCGPLVKKNDEWRVVSAGPT 81 (178)
T ss_dssp EEEEES-SCCHHHHHHCCTTCEEEEEEEEEECCHHHHHHHHHHHHHTCCCSSCCTTCEEECBCCEEEESSSEEEEECCBC
T ss_pred eEEcCC-CCCHHHHhhCCCCCEEEEeeEEEEEhHHHHHHHHHHHHcCCCCCcchhcCeEEEecCCCCCCCCeeeeecCCc
Confidence 367888 99999999999999999999999999999999999999999999999999999999987665 4569999999
Q ss_pred ccccchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCc-eeEEEEEEe
Q psy3775 357 TASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVE 435 (440)
Q Consensus 357 TS~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~-EAi~~leVe 435 (440)
||+|||+|+|.||+++|+++|||||+||++++++|| +++|||+++||||||++++||++++|+|+|||| ||+|+||||
T Consensus 82 TS~RMd~y~~~~l~~~G~~~~IGKG~rs~~v~~a~k-~~~vYl~~~GGaaaLl~~~Ik~v~~v~~~dLGmpEAi~~leVe 160 (178)
T d2isba1 82 TSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMR-GKAAYFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVE 160 (178)
T ss_dssp BGGGGTTTHHHHHHHCSCEEEEEBSCCCHHHHHHHT-TTEEEEEECSCSSTTGGGGEEEEEEEECGGGCTTTSEEEEEEE
T ss_pred hHHHHHHHHHHHHHhhCeEEEEeeccCChhHHHHHh-cCcEEEEeCcHHHHHHHhhccEEEEEecccCCCcceEEEEEEe
Confidence 999999999999999999999999999999999996 578999999999999999999999999999997 999999999
Q ss_pred cc-CCC
Q psy3775 436 NM-PVT 440 (440)
Q Consensus 436 ~f-P~~ 440 (440)
|| |+|
T Consensus 161 dFgP~i 166 (178)
T d2isba1 161 RFGPCI 166 (178)
T ss_dssp EEEEEE
T ss_pred eccceE
Confidence 99 985
No 2
>d2okqa1 d.58.4.18 (A:1-117) Hypothetical protein YbaA {Shigella flexneri [TaxId: 623]}
Probab=39.06 E-value=17 Score=29.37 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=33.6
Q ss_pred HHHhcCCCCCEEEEeEEEE---eeehHHHHHHHH---HHHcCCCCCcccC
Q psy3775 289 KEVSSWRSGEILLLNGKIL---TGRDAAHNRIQY---MLSKGEKIPVNFN 332 (440)
Q Consensus 289 e~v~~L~vGD~V~LsG~i~---taRDaaH~rl~e---~l~~g~~lP~dl~ 332 (440)
-..-+.+.|+.|..|=.+| ..||++++++.+ +-+.+++.|||-+
T Consensus 55 ~~av~ak~~EtVvFSwi~wpska~RD~~~~kvm~Dprm~~~~~~mPFDgk 104 (117)
T d2okqa1 55 RMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGK 104 (117)
T ss_dssp HHHTTCCTTEEEEEEEEEESCHHHHHHHHHHHHTCHHHHHTTSSCSSCTT
T ss_pred HHHhcCCCCCEEEEEEEEeCCHHHHHHHHHHHhhCccccccCCCCCCccc
Confidence 4556899999999999999 789999998872 2234556787654
No 3
>d1o6aa_ b.139.1.1 (A:) Putative flagelar motor switch protein FliN {Thermotoga maritima [TaxId: 2336]}
Probab=32.98 E-value=7.2 Score=29.20 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCc
Q psy3775 286 LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGP 341 (440)
Q Consensus 286 ~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP 341 (440)
++-.++.+|++||++.|.-. ..+++.+...|+.+|++=+
T Consensus 23 l~l~el~~L~~Gdvi~L~~~-----------------~~~~v~l~v~g~~~~~g~l 61 (87)
T d1o6aa_ 23 MTLKRVLEMIHGSIIELDKL-----------------TGEPVDILVNGKLIARGEV 61 (87)
T ss_dssp EEHHHHHHCCTTCEEEEEEE-----------------TTCCEEEEETTEEEEEEEE
T ss_pred eeHHHHhCCCCCCEEEeCCC-----------------CCCCEEEEECCEEEEEEEE
Confidence 45699999999999999832 2356778899999999933
No 4
>d1ed7a_ b.72.2.1 (A:) Chitin-binding domain of chitinase A1 {Bacillus circulans [TaxId: 1397]}
Probab=31.56 E-value=5.8 Score=27.00 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=16.0
Q ss_pred cCCCCCEEEEeEEEEeee
Q psy3775 293 SWRSGEILLLNGKILTGR 310 (440)
Q Consensus 293 ~L~vGD~V~LsG~i~taR 310 (440)
.+++||+|...|..|.++
T Consensus 7 ~Y~~Gd~Vty~G~~Y~ci 24 (45)
T d1ed7a_ 7 AYTAGQLVTYNGKTYKCL 24 (45)
T ss_dssp EECTTCCEEETTEEECBC
T ss_pred eEcCCCEEEECCeEEEEE
Confidence 578999999999999775
No 5
>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]}
Probab=30.86 E-value=3.6 Score=32.47 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHhhcCCCcccccCCce-EEE--EEeCceeeecCCCccHHHHHHHHHHHhhc
Q psy3775 18 SRMCAKEKRPICQDTGIV-NVF--LKIGMNVRFKGFNGSIHDVINEGVRRGYT 67 (440)
Q Consensus 18 ~~iA~~~~~PlCQDTG~~-~~f--v~~G~~v~~~g~~~~l~~ai~egv~~a~~ 67 (440)
.++|++.++|+-+|--++ ..| +++|++++- +|++++.+-++-.|+
T Consensus 50 ~~~A~e~gIPi~~d~~LAr~Ly~~~~ig~~IP~-----ely~aVAeIL~~v~~ 97 (100)
T g3bzy.1 50 IKLAELYDIPVIEDIPLARSLDKNIHKGQYITE-----DFFEPVAQLIRIAID 97 (100)
T ss_dssp HHHHHHTTCCEEECHHHHHHHHHHCCTTCBCCG-----GGHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCEEECHHHHHHHHHcCCCCCccCH-----HHHHHHHHHHHHHHh
Confidence 568999999999999988 554 788997753 689999999998886
No 6
>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}
Probab=26.23 E-value=15 Score=27.93 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=16.1
Q ss_pred HHHHhcCCCCCEEEEeEEE
Q psy3775 288 KKEVSSWRSGEILLLNGKI 306 (440)
Q Consensus 288 ~e~v~~L~vGD~V~LsG~i 306 (440)
..-+.+|++||.|.++|..
T Consensus 88 s~~l~~l~~Gd~v~i~gP~ 106 (114)
T d2cnda1 88 TQYLDSLPVGSYIDVKGPL 106 (114)
T ss_dssp HHHHHHCCTTCEEEEEEEE
T ss_pred HHHHhhCCCCCEEEEECCc
Confidence 3457889999999999975
No 7
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]}
Probab=25.73 E-value=21 Score=27.34 Aligned_cols=47 Identities=9% Similarity=0.332 Sum_probs=31.3
Q ss_pred cccchhhHHHHHHHhCceEEEecccCCHHHH----HHHHhcCeEEEEccch
Q psy3775 358 ASRMDHFTNLILEKIGLIAMIGKAERSDKII----KLIKKQKIAYLVAVGG 404 (440)
Q Consensus 358 S~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~----~a~~~~gavYl~~~GG 404 (440)
|++.-+|+..+-.++-..+.|||.|+++.++ +++++|.-|=.-..++
T Consensus 4 t~kqr~~LR~~ah~lkp~v~IGk~Glt~~vi~ei~~al~~~ELIKvki~~~ 54 (97)
T d1jo0a_ 4 STKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGA 54 (97)
T ss_dssp CHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTC
T ss_pred CHHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHHHHhCCeEEEEEcCC
Confidence 3344455555555556679999999999765 5666777776665554
No 8
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.88 E-value=25 Score=28.08 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCC--CccHHHHHHHHHHHh
Q psy3775 14 ILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGF--NGSIHDVINEGVRRG 65 (440)
Q Consensus 14 il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~--~~~l~~ai~egv~~a 65 (440)
+.+|.++|++.++ +|||.+|+.=|+ .+.|. ...|+++|++..+.+
T Consensus 107 i~~~~~la~~lgv-----~GTPt~~~~nG~--~v~G~~~~e~l~~~i~~~~k~~ 153 (156)
T d1eeja1 107 IADHYALGVQLGV-----SGTPAVVLSNGT--LVPGYQPPKEMKEFLDEHQKMT 153 (156)
T ss_dssp HHHHHHHHHHHTC-----CSSSEEECTTSC--EEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-----cCCCEEEEeCCe--EecCCCCHHHHHHHHHHHHHHh
Confidence 5678888888877 799998864354 44552 134777777776654
No 9
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.86 E-value=19 Score=22.62 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=16.5
Q ss_pred cCCCCCEE-EEeEEEEeeeh
Q psy3775 293 SWRSGEIL-LLNGKILTGRD 311 (440)
Q Consensus 293 ~L~vGD~V-~LsG~i~taRD 311 (440)
+|-.||+. |++|++|.-+|
T Consensus 8 ~LVPGDRFHyvNG~lfCE~D 27 (33)
T d1rutx4 8 RLVPGDRFHYINGSLFCEHD 27 (33)
T ss_dssp BCCTTCEEEEETTEEEEGGG
T ss_pred cccCCceeEEecCEEEEecC
Confidence 67889987 78999999887
No 10
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=22.98 E-value=19 Score=28.56 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=13.8
Q ss_pred HhcCCCCCEEEEeEE
Q psy3775 291 VSSWRSGEILLLNGK 305 (440)
Q Consensus 291 v~~L~vGD~V~LsG~ 305 (440)
+.+|++||.|.++|-
T Consensus 113 L~~lk~GD~v~v~GP 127 (133)
T d2bmwa1 113 LTHIEPGSEVKITGP 127 (133)
T ss_dssp HHTCCTTCEEEEEEE
T ss_pred HhhCCCCCEEEEeCC
Confidence 788999999999995
No 11
>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=22.90 E-value=24 Score=26.10 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.6
Q ss_pred HHHHhcCCCCCEEEEeEEE
Q psy3775 288 KKEVSSWRSGEILLLNGKI 306 (440)
Q Consensus 288 ~e~v~~L~vGD~V~LsG~i 306 (440)
..-+..|++||.|+++|..
T Consensus 79 t~~l~~l~~Gd~v~v~GP~ 97 (101)
T d1ep3b1 79 TYKLSKLESGAKVDVMGPL 97 (101)
T ss_dssp HHHHHTCCTTCEEEEEEEE
T ss_pred hHHHHhCCCCCEEEEeccc
Confidence 5678999999999999964
No 12
>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=22.55 E-value=19 Score=28.93 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=13.8
Q ss_pred HhcCCCCCEEEEeEE
Q psy3775 291 VSSWRSGEILLLNGK 305 (440)
Q Consensus 291 v~~L~vGD~V~LsG~ 305 (440)
|.+|++||.|.++|-
T Consensus 118 L~dLk~GD~V~v~GP 132 (136)
T d1fnda1 118 LCDLKPGAEVKLTGP 132 (136)
T ss_dssp HHTCCTTCEEEEEEE
T ss_pred hccCCCcCEEEEeCC
Confidence 788999999999995
No 13
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}
Probab=21.91 E-value=1.1e+02 Score=26.38 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCceeEEEEcCCHHHH--HHHHHHHhc
Q psy3775 130 DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKA--MLMAKKVLM 173 (440)
Q Consensus 130 ~~v~~fv~e~V~~aG~~~CPP~~vGVGIGGt~d~a--~~LaK~Al~ 173 (440)
+.+.+|+.+.|++.| +. -|-||+.|.-|.+ +.|+++|+-
T Consensus 8 ~~l~~~l~~~~~~~G---~k--~vvvglSGGVDSsv~A~L~~~a~~ 48 (255)
T d1xnga1 8 VYLCDFLEKEVQKRG---FK--KVVYGLSGGLDSAVVGVLCQKVFK 48 (255)
T ss_dssp HHHHHHHHHHHHHTT---CC--CEEEECCSSHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcC---CC--eEEEECCCCHHHHHHHHHHHHHhh
Confidence 468899999999998 43 3447899987754 577777753
No 14
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=21.65 E-value=16 Score=34.98 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=25.7
Q ss_pred HHHHHhCceEEEeccc--CCHHHHHHHHhcCe
Q psy3775 367 LILEKIGLIAMIGKAE--RSDKIIKLIKKQKI 396 (440)
Q Consensus 367 ~~l~~~Gv~~~IGKG~--~~~~~~~a~~~~ga 396 (440)
+...+.||+.+|==|| |+++++++|.+||.
T Consensus 350 e~aa~~Gv~aIiQPGGSirD~evI~aan~~~i 381 (393)
T d1g8ma2 350 DRAKRIGVQFIVAPSGSAADEVVIEACNELGI 381 (393)
T ss_dssp HHHHTTTEEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred HHHHHcCCeEEECCCCccchHHHHHHHHHhCC
Confidence 4666789999998888 67799999999983
No 15
>d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Haemophilus influenzae [TaxId: 727]}
Probab=21.45 E-value=30 Score=28.72 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=17.5
Q ss_pred CCCcee-EEEEcCCHHHHHHHHHHH
Q psy3775 148 CPPGIL-GIGIGGTPEKAMLMAKKV 171 (440)
Q Consensus 148 CPP~~v-GVGIGGt~d~a~~LaK~A 171 (440)
=||++| |+|+-++.|.++.+||+.
T Consensus 16 ~~~~iIAei~~~~nh~g~l~~AkkL 40 (281)
T d1o60a_ 16 KPFVLFGGMNVLESRDMAMQVCEAY 40 (281)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHH
T ss_pred CceEEEEeCCcccCHHHHHHHHHHH
Confidence 367676 555557999999888864
No 16
>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.83 E-value=19 Score=27.00 Aligned_cols=16 Identities=6% Similarity=0.273 Sum_probs=14.2
Q ss_pred HHHhcCCCCCEEEEeE
Q psy3775 289 KEVSSWRSGEILLLNG 304 (440)
Q Consensus 289 e~v~~L~vGD~V~LsG 304 (440)
..+.+|++||.|.++|
T Consensus 76 ~~l~~lk~GD~v~v~g 91 (99)
T d1fdra1 76 PRLAALKPGDEVQVVS 91 (99)
T ss_dssp HHHHTCCTTCEEEEES
T ss_pred HHHhhCCCCCEEEECc
Confidence 4578999999999997
Done!