RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3775
(440 letters)
>gnl|CDD|218689 pfam05681, Fumerase, Fumarate hydratase (Fumerase). This family
consists of several bacterial fumarate hydratase
proteins FumA and FumB. Fumarase, or fumarate hydratase
(EC 4.2.1.2), is a component of the citric acid cycle.
In facultative anaerobes such as Escherichia coli,
fumarase also engages in the reductive pathway from
oxaloacetate to succinate during anaerobic growth. Three
fumarases, FumA, FumB, and FumC, have been reported in
E. coli. fumA and fumB genes are homologous and encode
products of identical sizes which form thermolabile
dimers of Mr 120,000. FumA and FumB are class I enzymes
and are members of the iron-dependent hydrolases, which
include aconitase and malate hydratase. The active FumA
contains a 4Fe-4S centre, and it can be inactivated upon
oxidation to give a 3Fe-4S centre.
Length = 271
Score = 367 bits (945), Expect = e-127
Identities = 129/252 (51%), Positives = 166/252 (65%), Gaps = 14/252 (5%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AK +AQIL N+ + A+ KRPICQDTG VF+KIG V G + + INEG
Sbjct: 31 EESPLAKFVLAQILENAEIAAEGKRPICQDTGTAVVFVKIGQEVPI---EGDLEEAINEG 87
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VRR YT LR S+V+DP RKNT DNTPAVI++E+VPG+ L+I +A+KGGGSENK+
Sbjct: 88 VRRAYTEGP--LRPSVVADP-LERKNTGDNTPAVIHIEIVPGDELEITVAAKGGGSENKS 144
Query: 122 KFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINM 178
K AMLNPSD + ++++TV G CPPG++G+GIGGT EKA L+AKK L++ ++
Sbjct: 145 KLAMLNPSDGIEGIKKFVLETVKEAGPNACPPGVVGVGIGGTSEKAALLAKKALLRPVDE 204
Query: 179 NSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIP 238
+ P + EL EL KIN LGIG QG+GG +T LDVKI P H AS PVA+
Sbjct: 205 RN-----PDPRDAELEEELLEKINKLGIGPQGLGGKTTALDVKIERAPRHIASLPVAVNV 259
Query: 239 NCAATRHGHIIL 250
NC A RH +
Sbjct: 260 NCWADRHATAKI 271
>gnl|CDD|224862 COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate
hydratase class I, N-terminal domain [Energy production
and conversion].
Length = 297
Score = 338 bits (870), Expect = e-115
Identities = 122/268 (45%), Positives = 160/268 (59%), Gaps = 13/268 (4%)
Query: 2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
E+ AK + QIL NSR+ AKE RPICQDTGI F+K+G G + + +NEG
Sbjct: 40 EESEIAKYVLLQILENSRIAAKENRPICQDTGIPIFFVKVGQRWPT---GGELEEALNEG 96
Query: 62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
VR +N LR S DP R NT DNTPA I++E+VPG+ ++I +A+KGGGSENK+
Sbjct: 97 VREAT--EDNPLRPSNAVDPLTKRVNTGDNTPAQIHVEIVPGDEVEILVAAKGGGSENKS 154
Query: 122 KFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINM 178
ML PS+ + D++++TV T+G CPP I+GIGIGGT EKA L+AKK L++ I+
Sbjct: 155 ALKMLTPSEGYEGIKDFVLETVRTLGGNACPPYIVGIGIGGTAEKAALLAKKALLRPIDD 214
Query: 179 NSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIP 238
+ P K +L EL +IN LGIG QG+GG +T LDVK+ P H AS PVA+
Sbjct: 215 RN-----PNEKNAKLEEELLEEINKLGIGPQGLGGKTTALDVKVERAPRHPASLPVAVNV 269
Query: 239 NCAATRHGHIILNGSGPVFMKPPSLSNW 266
C A R L+G G K
Sbjct: 270 QCWADRRAKAKLDGDGIWEEKLEHNPGL 297
>gnl|CDD|218690 pfam05683, Fumerase_C, Fumarase C-terminus. This family consists
of the C terminal region of several bacterial fumarate
hydratase proteins (FumA and FumB). Fumarase, or
fumarate hydratase (EC 4.2.1.2), is a component of the
citric acid cycle. In facultative anaerobes such as
Escherichia coli, fumarase also engages in the reductive
pathway from oxaloacetate to succinate during anaerobic
growth.
Length = 205
Score = 292 bits (749), Expect = 4e-98
Identities = 106/189 (56%), Positives = 144/189 (76%), Gaps = 1/189 (0%)
Query: 252 GSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRD 311
GSGP +++PP L +WP+I + + V+L+ LT++E+ SW+ G+ LLL+GK+LTGRD
Sbjct: 1 GSGPEWLEPPPLEDWPEITWE-AGGEVRRVDLDALTEEELRSWKVGDTLLLSGKMLTGRD 59
Query: 312 AAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEK 371
AAH RI ML +GE +PV+ R IYYVGP++PV +EV+GPAGPTTA+RMD +T+ +LEK
Sbjct: 60 AAHKRIVEMLDRGEPLPVDLKGRFIYYVGPVDPVGDEVVGPAGPTTATRMDPYTDDMLEK 119
Query: 372 IGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYE 431
GL+ MIGK ER +I+ IKK YL A+GGAAYL+SKAIK +++ FE+LGMEAI+E
Sbjct: 120 TGLLGMIGKGERGPAVIEAIKKHGAVYLGAIGGAAYLVSKAIKKVEVVAFEELGMEAIWE 179
Query: 432 FNVENMPVT 440
F VE+ PVT
Sbjct: 180 FEVEDFPVT 188
>gnl|CDD|180486 PRK06246, PRK06246, fumarate hydratase; Provisional.
Length = 280
Score = 267 bits (684), Expect = 3e-87
Identities = 117/250 (46%), Positives = 156/250 (62%), Gaps = 17/250 (6%)
Query: 6 AAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRG 65
K+ + IL N+ + +E+ P+CQDTG+ VF++IG +V +G G + D INEGVR+G
Sbjct: 43 IGKEILKAILENAEIAKEEQVPLCQDTGMAVVFVEIGQDVHIEG--GDLEDAINEGVRKG 100
Query: 66 YTN-PNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFA 124
Y LR S+V+DP RKNT DNTPAVI+ E+VPG+ L I +A KGGGSEN +
Sbjct: 101 YEEGY---LRKSVVADP-LTRKNTGDNTPAVIHTEIVPGDKLKITVAPKGGGSENMSALK 156
Query: 125 MLNPSDSL---VDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDIN-MNS 180
ML P+D L ++++TV G CPP I+G+GIGGT +KA +AKK L++ I N
Sbjct: 157 MLKPADGLEGIKKFVLETVKEAGGNPCPPIIVGVGIGGTFDKAAKLAKKALLRPIGERN- 215
Query: 181 IIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNC 240
P +I L EL +IN LGIG G+GG +T LDVKI YP H AS PVA+ C
Sbjct: 216 -----PDPEIAALEEELLEEINKLGIGPMGLGGKTTALDVKIETYPCHIASLPVAVNIQC 270
Query: 241 AATRHGHIIL 250
A RH ++L
Sbjct: 271 HAARHAEVVL 280
>gnl|CDD|224751 COG1838, FumA, Tartrate dehydratase beta subunit/Fumarate hydratase
class I, C-terminal domain [Energy production and
conversion].
Length = 184
Score = 216 bits (553), Expect = 5e-69
Identities = 79/160 (49%), Positives = 114/160 (71%)
Query: 281 VNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVG 340
V+LNT K+E++ + G+++ L+GKI+TGRDAAH R+ ML +GE++PV+ +IYY G
Sbjct: 3 VDLNTPLKEEIAKLKVGDVVYLSGKIVTGRDAAHKRLLEMLDRGEELPVDLKGHIIYYAG 62
Query: 341 PINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLV 400
P+ V+G AGPTT+ RMD FT+ +LE+ G++AMIGK R + ++ KK K YLV
Sbjct: 63 PVKTKDGWVVGSAGPTTSGRMDKFTDELLEQTGVLAMIGKGGRGPETVEACKKHKAVYLV 122
Query: 401 AVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVT 440
A GGAA L +K+IKS + + +EDLGMEAI+E VE+ P+
Sbjct: 123 APGGAAALAAKSIKSVRCVAYEDLGMEAIWELEVEDFPLI 162
>gnl|CDD|240319 PTZ00226, PTZ00226, fumarate hydratase; Provisional.
Length = 570
Score = 218 bits (558), Expect = 4e-65
Identities = 146/455 (32%), Positives = 210/455 (46%), Gaps = 49/455 (10%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
+L N+ + A P CQDTG V K G + G +++GV YTN N
Sbjct: 118 TLLKNACIAAGRVLPGCQDTGTAIVLGKRGELIWT---GGEDEKALSKGVYNAYTNRN-- 172
Query: 73 LRASIVSD-PHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S ++ F KNT N PA I++ PGN + +KGGGS NKT ++L
Sbjct: 173 LRYSQLAPLDMFDEKNTGCNLPAQIDLYATPGNEYEFLFIAKGGGSANKTFLYQQTKSLL 232
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGT-PEKAMLMAKKVLMQDINMNSIIKNG 185
NP SL ++ + + T+G CPP L + IGG E + K L +S+ +G
Sbjct: 233 NP-KSLRKFLEEKIKTIGTSACPPYHLAVVIGGLSAEMTLKTVK--LASCRYYDSLPTSG 289
Query: 186 PKN----KIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
+ + E + K ++GIGAQ GG DV+++ P H AS P+ I +C+
Sbjct: 290 DEYGRAFRDLEWEEIILEKTQNIGIGAQ-FGGKYFAHDVRVIRLPRHGASCPIGIGVSCS 348
Query: 242 ATRHGHIILNGSGPVFM--------------KPPSLSNWPKIKFTTNNKKFHYVNLNTLT 287
A R +N G V++ LS P +K ++LN
Sbjct: 349 ADRQILAKINKDG-VYLEQLEHDPAQYLPDITEDDLSKTPVVK----------IDLNQPM 397
Query: 288 K---KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINP 344
+ K++S + L L G ++ RD AH +I ML GE +P N IYY GP
Sbjct: 398 EEILKQLSKYPVKTRLSLTGTLIVARDIAHAKIVEMLENGEPLPEYMKNHPIYYAGPAKT 457
Query: 345 VRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG 404
G GPTTA RMD + +L +E G + K RS + KK YL ++GG
Sbjct: 458 PDGYASGSFGPTTAGRMDSYVDLFMENGGSFITLAKGNRSKAVTNACKKYGGFYLGSIGG 517
Query: 405 -AAYLISKAIKSAKIICFEDLGMEAIYEFNVENMP 438
AA L IK +++ F +LGMEA+++ VEN P
Sbjct: 518 PAAILAKDNIKKVEVLDFPELGMEAVWKIEVENFP 552
>gnl|CDD|233103 TIGR00722, ttdA_fumA_fumB, hydro-lyases, Fe-S type,
tartrate/fumarate subfamily, alpha region. A number of
Fe-S cluster-containing hydro-lyases share a conserved
motif, including argininosuccinate lyase,
adenylosuccinate lyase, aspartase, class I fumarate
hydratase (fumarase), and tartrate dehydratase (see
PROSITE:PDOC00147). This model represents a subset of
closely related proteins or modules, including the E.
coli tartrate dehydratase alpha chain and the N-terminal
region of the class I fumarase (where the C-terminal
region is homologous to the tartrate dehydratase beta
chain). The activity of archaeal proteins in this
subfamily has not been established.
Length = 273
Score = 193 bits (492), Expect = 8e-59
Identities = 98/251 (39%), Positives = 137/251 (54%), Gaps = 20/251 (7%)
Query: 7 AKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGY 66
AK + IL N + K P+CQDTG+ F+K+G G +++ I +GV
Sbjct: 36 AKINLEAILDNIEIAEKLGVPVCQDTGVPIFFVKVGSR---FVLIGKLYEAIKQGVEEAT 92
Query: 67 TN-PNNILRASIVSDPHFIRKNTQDNT---PAVINMELVPGNFLDIKIASKGGGSENKTK 122
P LR + V R+NT DNT I++E+VPG+ L+I + KG GSEN +
Sbjct: 93 EEVP---LRPNAVHP--LTRENTGDNTGLGVPQIHVEIVPGDELEIVVFPKGAGSENPSA 147
Query: 123 FAMLNPSDSL---VDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMN 179
ML PSD + ++++TV G CPP I+G+GIGG+ E A +AKK L++ I
Sbjct: 148 LKMLKPSDGIEGVKKFVLETVKNAGGKPCPPIIVGVGIGGSFETAAKLAKKALLRPIG-- 205
Query: 180 SIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPN 239
+ P KI +L LEL +INSLGIG G+GG +T LDVKI H AS PVA+
Sbjct: 206 ---ERHPNPKIAKLELELLEEINSLGIGPMGLGGKTTALDVKIESAHCHTASLPVAVNIQ 262
Query: 240 CAATRHGHIIL 250
C A R +++
Sbjct: 263 CWAHRRATLVV 273
>gnl|CDD|237955 PRK15389, PRK15389, fumarate hydratase; Provisional.
Length = 536
Score = 194 bits (495), Expect = 2e-56
Identities = 144/468 (30%), Positives = 212/468 (45%), Gaps = 76/468 (16%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
+L N+ + A P+CQDTG + K G V + G + ++ GV YT N
Sbjct: 88 DLLKNANIAAGGVLPMCQDTGTAIIMGKKGQRV-WTGGDDEEA--LSRGVYDTYTELN-- 142
Query: 73 LRASIVSDPH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AM 125
LR S + P + KNT N PA I++ G+ +KGGGS NKT A+
Sbjct: 143 LRYSQNA-PLDMYEEKNTGTNLPAQIDIYATEGDEYKFLFMAKGGGSANKTFLYQETKAL 201
Query: 126 LNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGT-PEKAMLMAKKVLMQDINMNSI--I 182
LNP D L+ ++++ + T+G CPP L I IGGT E + K + S +
Sbjct: 202 LNP-DRLLAFLVEKMRTLGTAACPPYHLAIVIGGTSAEANLKTVK--------LASAKYL 252
Query: 183 KNGPKNKIE--------ELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPV 234
P E EL E+ LGIGAQ GG DV+++ P H AS PV
Sbjct: 253 DALPTEGNEHGHAFRDLELEQEVLKLTQKLGIGAQ-FGGKYFCHDVRVIRLPRHGASCPV 311
Query: 235 AIIPNCAATRH--GHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKF-------------H 279
I +C+A R+ I +G +F++ + TN ++
Sbjct: 312 GIGVSCSADRNIKAKITRDG---IFLE----------QLETNPARYLPEVLREKLEGEVV 358
Query: 280 YVNLN--------TLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNF 331
++LN L+K V + R L L G I+ RD AH +++ L GE +P
Sbjct: 359 KIDLNRPMAEILAELSKYPVKT-R----LSLTGTIIVARDIAHAKLKERLDAGEGLPQYL 413
Query: 332 NNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLI 391
+ +YY GP G GPTTA RMD + +L G + M+ K RS ++
Sbjct: 414 KDHPVYYAGPAKTPEGYASGSFGPTTAGRMDSYVDLFQAAGGSMVMLAKGNRSQQVTDAC 473
Query: 392 KKQKIAYLVAVGG-AAYLISKAIKSAKIICFEDLGMEAIYEFNVENMP 438
KK YL ++GG AA L IK +++ + +LGMEA+++ VE+ P
Sbjct: 474 KKHGGFYLGSIGGPAARLAQDCIKKVEVLEYPELGMEAVWKIEVEDFP 521
>gnl|CDD|215068 PLN00133, PLN00133, class I-fumerate hydratase; Provisional.
Length = 576
Score = 185 bits (470), Expect = 1e-52
Identities = 142/453 (31%), Positives = 206/453 (45%), Gaps = 46/453 (10%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
++L N+ + A P CQDTG V K G V +G + ++ GV YT+ N
Sbjct: 125 ELLKNANIAAGRVLPGCQDTGTAIVMGKRGQRVLT---DGEDEEHLSRGVYDAYTDTN-- 179
Query: 73 LRASIVSD-PHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S V+ F KNT N PA I++ G+ + +KGGGS NKT A+L
Sbjct: 180 LRYSQVAPLDMFEEKNTGTNLPAQIDLYAAKGDEYHFQFIAKGGGSANKTFLYQQTKALL 239
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPE----KAMLMAKKVLMQDINMNSII 182
N SL ++ + + T+G CPP L I IGG K + +A + +
Sbjct: 240 NEG-SLEAFLEEKIKTIGTSACPPYHLAIVIGGLSAEQNLKTVKLASTRYYDTLPTSG-- 296
Query: 183 KNGPKNKIEELRLE--LFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNC 240
N +L E + LGIGAQ GG DV+++ P H AS PV I +C
Sbjct: 297 -NALGRAFRDLEWEEKILKMTRGLGIGAQ-FGGKYFCHDVRVIRLPRHGASCPVGIGVSC 354
Query: 241 AATRH--GHIILNGSGPVFMKP----PSLSNWPKIKFTTNNKKFHYVNLN--------TL 286
+A R G I +G VF++ PS P + + + V+LN TL
Sbjct: 355 SADRQALGKITKDG---VFLEALETDPS-KYLPDVTEDSLSDDVVKVDLNRPMSEIRETL 410
Query: 287 TKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVR 346
+ V + L L G ++ RD AH ++ L GE +P + +IYY GP
Sbjct: 411 SAHPVRTR-----LSLTGTLVVARDIAHAKLLERLEAGEGLPQYAKDHIIYYAGPAKTPE 465
Query: 347 NEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-A 405
G GPTTA RMD + + + G + K RS ++ KK YL ++GG A
Sbjct: 466 GYASGSFGPTTAGRMDSYVDRFMAAGGSFVTLAKGNRSAQVTNACKKHGGFYLGSIGGPA 525
Query: 406 AYLISKAIKSAKIICFEDLGMEAIYEFNVENMP 438
A L IK +++ +LGMEA+++ VE+ P
Sbjct: 526 AILAQNCIKKVEVLENPELGMEAVWKIEVEDFP 558
>gnl|CDD|180724 PRK06842, PRK06842, fumarate hydratase; Provisional.
Length = 185
Score = 172 bits (438), Expect = 7e-52
Identities = 74/155 (47%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 286 LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPV 345
LT+++V ++G+ +L++G I T RDAAH R+ +L KGE++P++ +++IYYVGP
Sbjct: 9 LTEEKVKDLKAGDSVLISGYIYTARDAAHKRLIELLDKGEELPIDIKDQIIYYVGPSPAK 68
Query: 346 RNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGA 405
+VIG AGPTT+ RMD + +L+ IGL MIGK RSD++I+ IKK K Y A+GGA
Sbjct: 69 PGKVIGSAGPTTSYRMDAYAPRLLD-IGLKGMIGKGARSDEVIESIKKNKAVYFGAIGGA 127
Query: 406 AYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVT 440
A LI+K+IK +++I +EDLG EAI + V++ PV
Sbjct: 128 AALIAKSIKKSEVIAYEDLGAEAIRKLEVKDFPVV 162
>gnl|CDD|185289 PRK15391, PRK15391, fumarate hydratase FumB; Provisional.
Length = 548
Score = 178 bits (452), Expect = 3e-50
Identities = 137/448 (30%), Positives = 212/448 (47%), Gaps = 36/448 (8%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V + G G + +++GV Y N
Sbjct: 89 QFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQRV-WTG--GGDEEALSKGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAALDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQ---DINMNSIIK 183
P L +++++ + T+G CPP + IGGT + L K+ D +
Sbjct: 204 TPG-KLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + +L EL + LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVQLEQELLEEAQKLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RHGHIILNGSG---------PVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKK---EV 291
R+ +N G P P L + + V+LN K+ ++
Sbjct: 322 RNIKAKINREGIWIEKLEHNPGQYIPQELRQAGEGEAVK-------VDLNRPMKEILAQL 374
Query: 292 SSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIG 351
S + L L G I+ GRD AH +++ ++ G+++P + IYY GP G
Sbjct: 375 SQYPVSTRLSLTGTIIVGRDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSG 434
Query: 352 PAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-AAYLIS 410
GPTTA RMD + +L+ G + M+ K RS ++ K YL ++GG AA L
Sbjct: 435 SLGPTTAGRMDSYVDLLQSHGGSMIMLAKGNRSQQVTDACHKHGGFYLGSIGGPAAVLAQ 494
Query: 411 KAIKSAKIICFEDLGMEAIYEFNVENMP 438
++IK + + + +LGMEAI++ VE+ P
Sbjct: 495 QSIKHLECVAYPELGMEAIWKIEVEDFP 522
>gnl|CDD|185288 PRK15390, PRK15390, fumarate hydratase FumA; Provisional.
Length = 548
Score = 173 bits (440), Expect = 2e-48
Identities = 139/441 (31%), Positives = 209/441 (47%), Gaps = 22/441 (4%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q L NS + AK P CQDTG + K G V G + + + GV Y N
Sbjct: 89 QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEA---ALARGVYNTYIEDN-- 143
Query: 73 LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
LR S + ++ NT N PA I++ V G+ +KGGGS NKT A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203
Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQ---DINMNSIIK 183
P L +++++ + T+G CPP + IGGT + L K+ D +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262
Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
+G + EL EL + +LG+GAQ GG D++++ P H AS PV + +C+A
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321
Query: 244 RHGHIILNGSGPVFMKPPSLSN--WPKIKFTTNNKKFHYVNLNTLTKK---EVSSWRSGE 298
R+ +N G K P+ + V+LN K+ ++S +
Sbjct: 322 RNIKAKINRQGIWIEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVST 381
Query: 299 ILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTA 358
L LNG I+ GRD AH +++ + GE +P + IYY GP G GPTTA
Sbjct: 382 RLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTA 441
Query: 359 SRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-AAYLISKAIKSAK 417
RMD + + + + G + M+ K RS ++ KK YL ++GG AA L +IKS +
Sbjct: 442 GRMDSYVDQLQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLE 501
Query: 418 IICFEDLGMEAIYEFNVENMP 438
+ + +LGMEAI++ VE+ P
Sbjct: 502 CVEYPELGMEAIWKIEVEDFP 522
>gnl|CDD|185290 PRK15392, PRK15392, putative fumarate hydratase; Provisional.
Length = 550
Score = 169 bits (430), Expect = 4e-47
Identities = 122/447 (27%), Positives = 209/447 (46%), Gaps = 34/447 (7%)
Query: 13 QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
Q+L N+ + AK P CQDTG + G + + G N + + +++G+ + NN+
Sbjct: 88 QLLRNAEVSAKGVLPNCQDTGTATIVASKGQQI-WTGGNDA--EALSKGIYSTFQE-NNL 143
Query: 73 LRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AMLN 127
+ + NTQ N PA I++ V G+ +KGGGS NK ++L
Sbjct: 144 RFSQNAPLDMYTEVNTQTNLPAQIDISAVAGDEYHFLCVNKGGGSANKAALYQETKSLLQ 203
Query: 128 PSDSLVDWIMKTVPTMGAGWCPPGILGIGIGG-TPEKAMLMAKKVLMQDINMNSIIKNGP 186
P + L ++++ + ++G CPP + +GG + ++ + +AK + + N
Sbjct: 204 P-EKLTAFLIEKMKSLGTAACPPYHIAFVVGGLSADQTLKVAKLASTKYYDNLPTSGNEQ 262
Query: 187 KNKIEELRLE--LFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATR 244
++ LE L GIGAQ GG D++++ P H S P+A+ +C+A R
Sbjct: 263 GQAFRDIELEKVLLEASQQFGIGAQ-FGGKYFAHDIRVIRLPRHGGSCPIAMALSCSADR 321
Query: 245 HGHIILNGSG---------PVFMKPPSLSNWPKIKFTTNNKKFHYVNLNT---LTKKEVS 292
+ +N G P P SL N+ + ++LN ++++
Sbjct: 322 NIKAKINKHGIWLEKLEHNPGQYIPASLR-------EENHAQHVQLDLNRPLRDVMQDLA 374
Query: 293 SWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGP 352
G + L+G I+ RD AH +I+ L GE +P + ++YY GP N G
Sbjct: 375 RLPVGTRVSLSGPIVVARDIAHAKIKARLDSGEPMPEYLKHHIVYYAGPAKTPENMACGS 434
Query: 353 AGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKA 412
GPTT RMD + + G + M+ K RS ++ K L ++GGAA L+++
Sbjct: 435 LGPTTGGRMDGYVDTFQAAGGSLVMLSKGNRSQQVTDACHKHGGFNLGSIGGAAALLAQE 494
Query: 413 -IKSAKIICFEDLGMEAIYEFNVENMP 438
+KS + + + +LGMEA++ VEN+P
Sbjct: 495 YVKSLRCLEYPELGMEAVWMMEVENLP 521
>gnl|CDD|129806 TIGR00723, ttdB_fumA_fumB, hydro-lyases, Fe-S type,
tartrate/fumarate subfamily, beta region. A number of
Fe-S cluster-containing hydro-lyases share a conserved
motif, including argininosuccinate lyase,
adenylosuccinate lyase, aspartase, class I fumarate
hydratase (fumarase), and tartrate dehydratase (see
PROSITE:PDOC00147). This model represents a subset of
closely related proteins or modules, including the E.
coli tartrate dehydratase beta chain and the C-terminal
region of the class I fumarase (where the N-terminal
region is homologous to the tartrate dehydratase alpha
chain). The activity of archaeal proteins in this
subfamily has not been established.
Length = 168
Score = 144 bits (366), Expect = 1e-41
Identities = 55/150 (36%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Query: 289 KEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI-NPVRN 347
+++ + G+++ L G I T RD AH R+ ++ +G+++P + N VIY+ GPI
Sbjct: 1 EQILKLKVGDVVYLTGTIFTARDEAHARLLELIDEGKELPFDLNGSVIYHAGPIVTKNGE 60
Query: 348 EVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAY 407
+ GPTT++RM+ F +LEK+G++A+IGK S ++++ +K K YL GG A
Sbjct: 61 WEVVSVGPTTSARMNPFEPELLEKLGVMAIIGKGGMSKEVVEACRKYKAVYLAFPGGCAA 120
Query: 408 LISKAIKSAKIICFEDLGM-EAIYEFNVEN 436
L+++++K + + +EDLGM EAI+E VE+
Sbjct: 121 LLAQSVKKVEGVAWEDLGMPEAIWELEVED 150
>gnl|CDD|180366 PRK06043, PRK06043, fumarate hydratase; Provisional.
Length = 192
Score = 119 bits (299), Expect = 1e-31
Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 8/159 (5%)
Query: 283 LNTLTKKE-VSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGP 341
L T KKE + G+I+ ++G+ILT RD AH RI M KG+++P + VIY+ GP
Sbjct: 5 LKTPLKKEDIEKLNVGDIVYISGEILTARDEAHARILEMKEKGKELPFSLEGAVIYHCGP 64
Query: 342 INPVRN---EVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAY 398
+ + +V+ AGPTT++RM T +LEK+ + A+IGK + L K K Y
Sbjct: 65 LMKKTDEGWKVVS-AGPTTSARMSKMTPKLLEKVEVRAIIGKGGMKNVADAL--KGKCVY 121
Query: 399 LVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVEN 436
L GG A L +++IK K + + DLGM EA++ VE
Sbjct: 122 LAYTGGCAALAAESIKRVKAVHWLDLGMPEAVWVLEVEE 160
>gnl|CDD|169425 PRK08395, PRK08395, fumarate hydratase; Provisional.
Length = 162
Score = 96.4 bits (240), Expect = 1e-23
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 14/161 (8%)
Query: 281 VNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339
V L T L+ ++V ++G+++ L+G I T RD AH R LS+G P N VIY+
Sbjct: 1 VKLKTPLSWEDVLKLKAGDVVYLSGIIYTARDLAHRRF---LSEG--FPFNPEGAVIYHC 55
Query: 340 GPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYL 399
GP+ V+N+ I AGPTT++RM+ + + + G+ +IGK + + K + Y
Sbjct: 56 GPL--VKNKKIVSAGPTTSARMNKYLDFLFSL-GVRGIIGKGGMNAEPF----KGRAVYF 108
Query: 400 VAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENMPV 439
GGA L +K+IK + + +EDLGM +A++E VE+ P+
Sbjct: 109 AFPGGAGSLAAKSIKRVRDVYWEDLGMPDAVWELEVEDFPL 149
>gnl|CDD|181309 PRK08230, PRK08230, tartrate dehydratase subunit alpha; Validated.
Length = 299
Score = 99.4 bits (248), Expect = 2e-23
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 23/245 (9%)
Query: 17 NSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRG-YTNPNNILRA 75
N ++ RP CQDTG++ F+K+G G + ++ E V P LR
Sbjct: 55 NQQLAIDLNRPSCQDTGVIQFFVKVGARFPLLG---ELESILKEAVEEATVKAP---LRH 108
Query: 76 SIVSDPHFIRKNTQDNT----PAVINMELVPGN-FLDIKIASKGGGSENKTKFAMLNPS- 129
+ V F NT NT P V E+VP + +I++ GGG + +L P
Sbjct: 109 NAVET--FDEYNTGKNTGSGVPWV-FWEIVPDSDDAEIEVYMAGGGCTLPGRAKVLMPGE 165
Query: 130 --DSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPK 187
+ +V ++ + + G CPP ++G+GI + E A +++KK +++ I + P
Sbjct: 166 GYEGVVKFVFDVITSYGVNACPPLLVGVGIATSVETAAVLSKKAILRPIGSRN-----PN 220
Query: 188 NKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGH 247
+ EL L +N +G+G QG+ G S+V+ V I H ++ VA+ C A R G
Sbjct: 221 PRAAELEKRLEEGLNRIGLGPQGLTGNSSVMGVNIESAARHPSTIGVAVSTGCWAHRRGT 280
Query: 248 IILNG 252
I+ +
Sbjct: 281 IVFDA 285
>gnl|CDD|236192 PRK08228, PRK08228, L(+)-tartrate dehydratase subunit beta;
Validated.
Length = 204
Score = 63.2 bits (154), Expect = 1e-11
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 10/152 (6%)
Query: 290 EVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPI-----NP 344
++ + G+++ L G ++T RD AH R+ + G ++PV+ N I++ GPI N
Sbjct: 14 DLQDIKVGDVIYLTGTLVTCRDVAHRRL---IELGRELPVDLNGGAIFHAGPIVRPKKND 70
Query: 345 VRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG 404
+ E++ GPTT+ RM+ F +E+ G+ ++GK + ++ K + V G
Sbjct: 71 DKFEMVS-VGPTTSMRMEKFEKEFIEQTGVKLIVGKGGMGPGTEEGCQEFKALHCVFPAG 129
Query: 405 AAYLISKAIKSAKIICFEDLGM-EAIYEFNVE 435
A L + ++ + + DLGM E ++ V+
Sbjct: 130 CAVLAATQVEEIEDAQWRDLGMPETLWVCRVK 161
>gnl|CDD|233048 TIGR00605, rad4, DNA repair protein rad4. All proteins in this
family for which functions are known are involved in
targeting nucleotide excision repair to specific regions
of the genome.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 713
Score = 32.5 bits (74), Expect = 0.48
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 243 TRHGHIILNGSGPVFMKPPSLSNW--PKIKFTTN--NKKFHYVNLNTL---TKKEVSSWR 295
H S +K LSN K++ + +K + +L K V +
Sbjct: 158 MVHLFTRNEWSLSAPLKSAKLSNLIPEKVRLLLHPSVRKSEELPSRSLRGLRKPLVEKLK 217
Query: 296 SGEILLLNG--KILTGRDAAHNRIQYMLSKGEKIPVNFNNR 334
G K G N +Y SK E+I + N +
Sbjct: 218 KCMETWQKGLRKTTKGLLKLLNGGRYSRSKWEEIEKSSNRK 258
>gnl|CDD|237347 PRK13318, PRK13318, pantothenate kinase; Reviewed.
Length = 258
Score = 31.7 bits (73), Expect = 0.61
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 373 GLIAMIGKAERSDKIIKLIKKQ--KIAYLVAVGGAAYLISKAIKSAKIICFEDL---GME 427
G + ++ + I+K IK++ K ++A GG A L ++ + I+ DL G+
Sbjct: 196 GYVGLV------EGIVKRIKEELGKDPKVIATGGLAPLFAEESDTIDIVD-PDLTLKGLR 248
Query: 428 AIYEFNVENM 437
IYE N E
Sbjct: 249 LIYERNKELQ 258
>gnl|CDD|224890 COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent
alcohol dehydrogenase family [Energy production and
conversion].
Length = 384
Score = 29.6 bits (67), Expect = 3.2
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 385 DKIIKLIKKQKIAYLVAVGGAAYL-ISKAIKSA 416
K +++ K++ I +L+AVGG + + +K I +A
Sbjct: 75 MKAVEICKEENIDFLLAVGGGSVIDGTKFIAAA 107
>gnl|CDD|163451 TIGR03739, PRTRC_D, PRTRC system protein D. A novel genetic system
characterized by six major proteins, included a ParB
homolog and a ThiF homolog, is designated PRTRC, or
ParB-Related,ThiF-Related Cassette. It is often found on
plasmids. This protein family is designated PRTRC system
protein D. The gray zone, between trusted and noise,
includes proteins found in the same genomes as other
proteins of the PRTRC systems, but not in the same
contiguous gene region.
Length = 320
Score = 29.0 bits (65), Expect = 5.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 396 IAYLVAVGGAAYLISKAIKSA 416
I +V VGG A+L KA+K+A
Sbjct: 274 IQNIVLVGGGAFLFKKAVKAA 294
>gnl|CDD|114541 pfam05819, NolX, NolX protein. This family consists of Rhizobium
NolX and Xanthomonas HrpF proteins. The interaction
between the plant pathogen Xanthomonas campestris pv.
vesicatoria and its host plants is controlled by hrp
genes (hypersensitive reaction and pathogenicity), which
encode a type III protein secretion system. Among type
III-secreted proteins are avirulence proteins, effectors
involved in the induction of plant defence reactions.
HrpF is dispensable for protein secretion but required
for AvrBs3 recognition in planta, is thought to function
as a translocator of effector proteins into the host
cell. NolX, a soybean cultivar specificity protein, is
secreted by a type III secretion system (TTSS) and shows
homology to HrpF of the plant pathogen Xanthomonas
campestris pv. vesicatoria. It is not known whether NolX
functions at the bacterium-plant interface or acts
inside the host cell. NolX is expressed in planta only
during the early stages of nodule development.
Length = 545
Score = 28.9 bits (64), Expect = 5.8
Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
Query: 49 GFNGSIHDV-----INEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPG 103
GF G H V + R Y+N + V P ++ AV +M +
Sbjct: 441 GFFGGGHTVDSGNISKKDFGRFYSNMTAANKT--VQQPKTHAAESEAQQKAVADMLMGKA 498
Query: 104 NFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIG 156
+ DIK K GG+ K L ++DW V + GI GIG
Sbjct: 499 DQPDIKSPKKNGGAFKKGLDEFLKWYSKVLDWASVAVSALS------GIPGIG 545
>gnl|CDD|235609 PRK05787, PRK05787, cobalt-precorrin-6Y C(5)-methyltransferase;
Validated.
Length = 210
Score = 28.3 bits (64), Expect = 7.1
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 369 LEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG------AAYLISKAIKSAKIICFE 422
+ + G+ +++ L+K + ++ AA L+ + +I+ E
Sbjct: 117 MNDVVFTTSHGRGPNFEELEDLLKNGRKVIMLPDPRFGPKEIAAELLERGKLERRIVVGE 176
Query: 423 DLGM--EAIYEFNVENMPVT 440
+L E I++ + +
Sbjct: 177 NLSYPDERIHKLTLSEIEPL 196
>gnl|CDD|239019 cd02068, radical_SAM_B12_BD, B12 binding domain_like associated
with radical SAM domain. This domain shows similarity
with B12 (adenosylcobamide) binding domains found in
several enzymes, such as glutamate mutase, methionine
synthase and methylmalonyl-CoA mutase, but it lacks the
signature motif Asp-X-His-X-X-Gly, which contains the
histidine that acts as a cobalt ligand. The function of
this domain remains unclear.
Length = 127
Score = 27.3 bits (61), Expect = 8.0
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 349 VIGPAGPTTASRMDHFTNLILEK---------IGLIAMIGKAERSDKIIKLIKKQKIAYL 399
V+ AG A + I+E +G+ M + ++ K+ K+ +
Sbjct: 11 VLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVI 70
Query: 400 VAVGGA 405
V VGG
Sbjct: 71 VVVGGP 76
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase.
Length = 188
Score = 27.8 bits (62), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 372 IGLIAMIGKAERSDKII 388
IGL+ MI + E+ DKII
Sbjct: 99 IGLMPMIDQGEKDDKII 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,653,996
Number of extensions: 2256975
Number of successful extensions: 2079
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2018
Number of HSP's successfully gapped: 41
Length of query: 440
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 340
Effective length of database: 6,502,202
Effective search space: 2210748680
Effective search space used: 2210748680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)