RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3775
         (440 letters)



>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 178

 Score =  173 bits (440), Expect = 5e-53
 Identities = 58/164 (35%), Positives = 97/164 (59%), Gaps = 5/164 (3%)

Query: 281 VNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339
             L T L K ++   + G+++ + G+I T RD AH R    + +G+++P +F+  V+Y+ 
Sbjct: 4   YELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHC 63

Query: 340 GPINPVRNEV-IGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAY 398
           GP+    +E  +  AGPTT++RM+ FT  ILEK+  + +IGK   S+++++ ++  K AY
Sbjct: 64  GPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRG-KAAY 122

Query: 399 LVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVT 440
               GGA  L + +IK  K + +EDLGM EA++   VE   P  
Sbjct: 123 FAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCI 166


>d1w2za2 d.17.2.1 (A:6-98) Copper amine oxidase, domains 1 and 2
           {Pea seedling (Pisum sativum) [TaxId: 3888]}
          Length = 93

 Score = 27.1 bits (60), Expect = 1.4
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 270 KFTTNNKKFHYVNLNTLTKKEVSSWRSGE 298
             + N   FHY+ L+   K  V  + +  
Sbjct: 25  PISNNRLAFHYIGLDDPEKDHVLRYETHP 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,671,098
Number of extensions: 82265
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 6
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)