Query psy3777
Match_columns 99
No_of_seqs 112 out of 1009
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 17:02:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_P 50S ribosomal protein L 100.0 1.8E-45 6.1E-50 254.0 11.7 94 2-98 2-96 (114)
2 2zjr_M 50S ribosomal protein L 100.0 4.9E-45 1.7E-49 264.9 7.4 98 1-98 5-104 (166)
3 3v2d_T 50S ribosomal protein L 100.0 3.4E-44 1.2E-48 256.1 11.3 94 2-98 5-99 (146)
4 2ftc_K 39S ribosomal protein L 100.0 1.7E-40 5.7E-45 224.1 11.0 79 19-98 1-80 (98)
5 3bbo_R Ribosomal protein L19; 100.0 5.4E-39 1.9E-43 242.5 -7.6 90 5-98 129-219 (233)
6 2vc8_A Enhancer of mRNA-decapp 90.0 1.2 4.2E-05 28.7 6.3 56 23-91 7-69 (84)
7 3p8d_A Medulloblastoma antigen 87.2 3.1 0.00011 25.5 6.6 47 19-78 4-50 (67)
8 4a53_A EDC3; RNA binding prote 76.6 3.4 0.00012 28.4 4.2 53 24-92 11-65 (125)
9 1jb7_A Telomere-binding protei 74.6 2.2 7.6E-05 34.8 3.3 40 17-63 108-148 (495)
10 3qii_A PHD finger protein 20; 72.9 16 0.00053 23.4 6.5 48 18-78 18-65 (85)
11 2eif_A IF-5A, protein (eukaryo 70.1 5.5 0.00019 27.0 4.0 50 18-79 12-67 (136)
12 4fm4_B NitrIle hydratase beta 70.0 2.1 7.2E-05 31.3 1.9 34 20-54 117-154 (206)
13 4he6_A Peptidase family U32; u 65.6 6.8 0.00023 24.1 3.5 36 40-75 3-39 (89)
14 3m4w_A Sigma-E factor regulato 65.0 20 0.00069 27.0 6.6 50 40-93 15-65 (295)
15 2rm4_A CG6311-PB, DM EDC3; enh 62.0 17 0.00057 24.1 4.9 58 23-92 10-73 (103)
16 1qzg_A Protection of telomeres 60.7 6.7 0.00023 28.3 3.1 38 17-63 95-133 (187)
17 4b3f_X DNA-binding protein smu 60.5 17 0.00058 29.5 5.8 38 18-63 75-114 (646)
18 1nz9_A Transcription antitermi 58.9 21 0.00072 20.1 4.6 27 21-54 4-30 (58)
19 3d6x_A (3R)-hydroxymyristoyl-[ 55.6 12 0.00042 24.2 3.5 29 21-50 100-128 (146)
20 1bkb_A Translation initiation 55.2 16 0.00056 24.5 4.2 60 19-86 11-76 (136)
21 1iz6_A Initiation factor 5A; S 54.5 8.8 0.0003 26.0 2.7 53 19-79 9-63 (138)
22 4h4g_A (3R)-hydroxymyristoyl-[ 54.0 13 0.00044 25.4 3.5 28 21-49 110-137 (160)
23 2e6z_A Transcription elongatio 53.7 6.4 0.00022 22.9 1.7 29 19-54 5-33 (59)
24 2kbn_A Conserved protein; nucl 53.2 14 0.00047 23.7 3.4 20 17-36 56-76 (109)
25 2gll_A FABZ, (3R)-hydroxymyris 52.5 16 0.00053 25.0 3.8 29 21-50 124-152 (171)
26 2k52_A Uncharacterized protein 51.5 15 0.0005 21.9 3.1 21 21-41 45-65 (80)
27 2zzd_A Thiocyanate hydrolase s 50.3 7.8 0.00027 26.5 1.9 36 18-54 33-72 (126)
28 3cnr_A Type IV fimbriae assemb 48.9 39 0.0013 22.2 5.2 47 20-73 40-86 (117)
29 2d6f_A Glutamyl-tRNA(Gln) amid 46.0 24 0.00082 28.3 4.4 44 21-73 15-60 (435)
30 2zou_A Spondin-1; beta-sandwic 44.5 24 0.00081 23.9 3.6 30 21-55 34-63 (149)
31 3i4o_A Translation initiation 44.4 12 0.00043 23.3 2.0 19 16-34 48-66 (79)
32 3p8b_B Transcription antitermi 44.4 28 0.00097 23.2 4.0 47 19-74 89-137 (152)
33 1wi5_A RRP5 protein homolog; S 44.3 20 0.00068 23.0 3.1 34 21-60 67-100 (119)
34 1yby_A Translation elongation 44.1 62 0.0021 23.6 6.0 62 18-87 33-99 (215)
35 1vq8_K 50S ribosomal protein L 43.5 37 0.0013 23.2 4.5 36 17-53 42-77 (132)
36 2vb2_X Copper protein, cation 41.8 41 0.0014 20.9 4.2 19 18-36 58-76 (88)
37 3dm3_A Replication factor A; p 41.7 33 0.0011 21.8 3.8 27 21-47 66-92 (105)
38 1u1z_A (3R)-hydroxymyristoyl-[ 41.2 27 0.00091 23.5 3.5 16 21-36 120-135 (168)
39 3cdd_A Prophage MUSO2, 43 kDa 40.8 44 0.0015 24.9 5.0 36 21-63 56-91 (361)
40 3h8z_A FragIle X mental retard 40.7 31 0.0011 23.3 3.7 33 20-54 59-91 (128)
41 3a8g_B NitrIle hydratase subun 40.6 13 0.00043 27.3 1.8 35 19-54 120-159 (212)
42 3cpf_A Eukaryotic translation 40.6 61 0.0021 21.7 5.2 51 20-78 10-62 (138)
43 3e0e_A Replication protein A; 40.4 36 0.0012 21.1 3.8 16 21-36 63-78 (97)
44 4i83_A 3-hydroxyacyl-[acyl-car 40.0 29 0.001 22.9 3.5 28 21-49 106-133 (152)
45 1xjv_A Protection of telomeres 39.5 18 0.00062 26.8 2.6 15 17-31 62-77 (294)
46 3k67_A Putative dehydratase AF 39.1 19 0.00066 24.5 2.5 17 20-36 114-130 (159)
47 1y96_A Gemin6, SIP2, GEM-assoc 38.6 73 0.0025 20.1 7.9 60 24-93 16-75 (86)
48 1ugp_B NitrIle hydratase beta 38.5 14 0.00049 27.2 1.9 35 19-54 136-174 (226)
49 3qyh_B CO-type nitrIle hydrata 38.1 15 0.0005 27.1 1.8 35 19-54 128-166 (219)
50 1d1n_A Initiation factor 2; be 37.6 20 0.00067 23.4 2.2 16 17-32 77-92 (99)
51 2bm3_A Type 2 cohesin, scaffol 37.3 69 0.0024 22.8 5.2 31 18-53 14-44 (166)
52 2khi_A 30S ribosomal protein S 37.2 29 0.001 22.1 3.0 16 21-36 75-90 (115)
53 2qcp_X Cation efflux system pr 37.2 27 0.00093 21.3 2.8 20 17-36 49-68 (80)
54 3hht_B NitrIle hydratase beta 36.8 16 0.00054 27.1 1.9 35 19-54 139-177 (229)
55 2xsk_A CSGC; chaperone; 1.70A 36.2 37 0.0013 22.6 3.4 20 21-40 70-89 (110)
56 3d37_A Tail protein, 43 kDa; s 36.2 51 0.0017 25.1 4.7 37 21-64 52-90 (381)
57 2khj_A 30S ribosomal protein S 35.9 32 0.0011 21.6 3.0 16 21-36 75-90 (109)
58 2xzm_Q Ribosomal protein S17 c 35.7 43 0.0015 23.5 3.9 22 40-64 65-86 (157)
59 1yn8_A NBP2, NAP1-binding prot 35.6 37 0.0013 18.4 2.9 14 21-34 19-32 (59)
60 1zq1_A Glutamyl-tRNA(Gln) amid 35.4 66 0.0023 25.7 5.4 62 21-93 11-74 (438)
61 1z6b_A Pffabz, fatty acid synt 35.2 33 0.0011 22.4 3.1 17 20-36 105-121 (154)
62 3j21_J 50S ribosomal protein L 35.1 76 0.0026 21.8 5.0 37 17-54 51-87 (141)
63 2fpe_A C-JUN-amino-terminal ki 35.1 26 0.00088 19.4 2.2 13 21-33 21-33 (62)
64 3er0_A Eukaryotic translation 35.0 64 0.0022 22.6 4.7 52 19-78 33-86 (167)
65 3v2d_O 50S ribosomal protein L 34.9 43 0.0015 22.5 3.6 35 20-54 31-67 (122)
66 3oyy_A EF-P, elongation factor 34.8 44 0.0015 23.8 3.9 53 18-78 6-59 (191)
67 1y43_B Aspergillopepsin II hea 34.7 96 0.0033 21.8 5.6 15 21-35 56-70 (173)
68 1tg0_A BBC1 protein, myosin ta 34.1 61 0.0021 18.2 3.9 14 21-34 25-38 (68)
69 2ldm_A Uncharacterized protein 40.3 8.5 0.00029 24.3 0.0 56 21-89 6-63 (81)
70 1x6o_A Eukaryotic initiation f 34.0 44 0.0015 23.6 3.8 52 20-79 34-87 (174)
71 2gnc_A SLIT-ROBO RHO GTPase-ac 33.9 40 0.0014 18.5 2.9 15 21-35 24-38 (60)
72 1zuy_A Myosin-5 isoform; SH3 d 33.4 29 0.00099 18.7 2.2 14 21-34 19-32 (58)
73 3u5c_L RP41, S18, YS12, 40S ri 33.0 65 0.0022 22.6 4.4 22 40-64 66-87 (156)
74 2f41_A Transcription factor FA 33.0 59 0.002 20.2 4.0 15 21-35 72-86 (121)
75 1wru_A 43 kDa tail protein; ba 32.9 59 0.002 24.6 4.6 36 21-63 47-84 (379)
76 2eqj_A Metal-response element- 32.5 85 0.0029 19.0 6.0 39 17-64 9-47 (66)
77 1zx6_A YPR154WP; SH3 domain, p 32.3 33 0.0011 18.7 2.4 14 21-34 20-33 (58)
78 2jvv_A Transcription antitermi 32.2 61 0.0021 22.0 4.2 28 21-55 127-154 (181)
79 1k4u_S Phagocyte NADPH oxidase 32.2 30 0.001 19.1 2.2 14 21-34 23-36 (62)
80 2lkn_A AH receptor-interacting 32.2 26 0.00089 24.3 2.3 18 17-34 22-39 (165)
81 2lj0_A Sorbin and SH3 domain-c 32.1 30 0.001 20.1 2.2 14 21-34 24-37 (65)
82 3r8s_K 50S ribosomal protein L 32.0 48 0.0017 22.3 3.5 35 20-54 31-67 (122)
83 1w70_A Neutrophil cytosol fact 31.9 33 0.0011 18.8 2.4 14 21-34 22-35 (60)
84 2p26_A Integrin beta-2; hybrid 31.9 71 0.0024 23.9 4.8 39 21-77 84-122 (280)
85 1iq6_A (R)-hydratase, (R)-spec 31.5 60 0.0021 19.9 3.8 16 21-36 87-102 (134)
86 2eyx_A V-CRK sarcoma virus CT1 30.8 25 0.00086 19.9 1.7 14 21-34 26-39 (67)
87 2g6f_X RHO guanine nucleotide 30.7 34 0.0012 18.7 2.2 13 21-33 22-34 (59)
88 3hks_A EIF-5A-2, eukaryotic tr 30.7 1.4E+02 0.0047 20.9 6.0 51 20-78 32-84 (167)
89 3tre_A EF-P, elongation factor 29.7 49 0.0017 23.5 3.4 54 18-79 8-62 (191)
90 2do3_A Transcription elongatio 29.6 25 0.00084 21.6 1.6 27 21-54 17-43 (69)
91 2bzy_A CRK-like protein, CRKL 29.4 38 0.0013 19.1 2.4 14 21-34 21-34 (67)
92 2fpf_A C-JUN-amino-terminal ki 29.1 36 0.0012 19.3 2.2 13 21-33 24-36 (71)
93 3coo_A Spondin-1; reelin-N dom 29.1 31 0.0011 24.4 2.3 31 21-56 49-79 (180)
94 2a28_A BZZ1 protein; SH3 domai 28.9 32 0.0011 18.4 1.9 14 21-34 18-31 (54)
95 3kd4_A Putative protease; stru 28.8 44 0.0015 26.6 3.4 21 16-36 100-120 (506)
96 3u23_A CD2-associated protein; 28.6 55 0.0019 17.8 2.9 15 20-34 24-38 (65)
97 2equ_A PHD finger protein 20-l 28.6 1E+02 0.0034 18.6 4.6 43 19-73 7-49 (74)
98 2z1c_A Hydrogenase expression/ 28.5 35 0.0012 21.0 2.2 14 19-32 33-46 (75)
99 2lcs_A NAP1-binding protein 2; 28.3 44 0.0015 19.4 2.6 14 21-34 23-36 (73)
100 1jo8_A ABP1P, actin binding pr 28.2 31 0.0011 18.8 1.8 13 21-33 18-30 (58)
101 2j05_A RAS GTPase-activating p 28.2 39 0.0013 18.9 2.2 13 21-33 24-36 (65)
102 2k4k_A GSP13, general stress p 27.9 50 0.0017 21.5 3.0 16 21-36 51-66 (130)
103 1cka_A C-CRK N-terminal SH3 do 27.9 34 0.0012 18.5 1.9 13 21-33 19-31 (57)
104 1q6w_A Monoamine oxidase regul 27.8 79 0.0027 20.4 4.0 16 21-36 106-121 (161)
105 1gcq_C VAV proto-oncogene; SH3 27.7 34 0.0011 19.3 1.9 13 21-33 28-40 (70)
106 2wnv_A C1Q chain A, complement 27.7 81 0.0028 20.4 4.0 30 21-51 97-131 (134)
107 3rnj_A Brain-specific angiogen 27.7 30 0.001 19.4 1.7 12 20-31 25-36 (67)
108 2eqk_A Tudor domain-containing 27.7 1.2E+02 0.004 19.2 6.1 48 21-79 21-68 (85)
109 2xmf_A Myosin 1E SH3; motor pr 27.7 41 0.0014 18.4 2.2 14 21-34 23-36 (60)
110 2wnv_C C1Q chain C, complement 27.7 75 0.0026 20.5 3.9 31 21-51 96-129 (131)
111 2zkq_q 40S ribosomal protein S 27.6 65 0.0022 22.6 3.7 23 39-64 67-89 (158)
112 2o9s_A Ponsin; SH3 domain, sig 27.5 43 0.0015 18.7 2.4 13 21-33 24-36 (67)
113 2cuc_A SH3 domain containing r 27.5 58 0.002 18.2 2.9 14 21-34 25-38 (70)
114 2l55_A SILB,silver efflux prot 27.5 1.1E+02 0.0037 18.7 4.6 20 17-36 43-62 (82)
115 2fhd_A RAD9 homolog, DNA repai 27.3 28 0.00094 24.6 1.7 12 20-31 62-73 (153)
116 2bz8_A SH3-domain kinase bindi 27.3 31 0.0011 18.8 1.6 13 21-33 19-31 (58)
117 2wnv_B C1Q chain B, complement 27.3 77 0.0026 20.7 3.9 31 21-51 98-131 (136)
118 1sem_A SEM-5; SRC-homology 3 ( 27.2 36 0.0012 18.4 1.9 13 21-33 20-32 (58)
119 1uti_A GRB2-related adaptor pr 26.9 34 0.0012 18.5 1.8 13 21-33 19-31 (58)
120 4e6r_A Cytoplasmic protein NCK 26.9 44 0.0015 17.9 2.2 15 20-34 18-32 (58)
121 1g2b_A Spectrin alpha chain; c 26.8 34 0.0012 19.0 1.8 14 21-34 39-52 (62)
122 2f3x_A Transcription factor FA 26.7 84 0.0029 20.9 4.1 15 21-35 108-122 (157)
123 3udc_A Small-conductance mecha 26.6 60 0.0021 23.7 3.6 10 21-30 128-137 (285)
124 2b3n_A Hypothetical protein AF 26.6 72 0.0025 21.2 3.7 35 1-35 9-49 (159)
125 2c2i_A RV0130; hotdog, hydrata 26.4 48 0.0017 21.1 2.7 16 21-36 99-114 (151)
126 3kcp_B Cellulosome anchoring p 26.4 1.3E+02 0.0045 21.7 5.2 32 17-53 25-56 (187)
127 1ueb_A EF-P, TT0860, elongatio 26.3 1.1E+02 0.0037 21.5 4.7 51 20-78 5-56 (184)
128 4hcz_A PHD finger protein 1; p 26.3 1.1E+02 0.0036 18.2 4.6 36 20-64 2-37 (58)
129 2lkt_A Retinoic acid receptor 26.2 32 0.0011 22.1 1.8 15 17-31 3-17 (125)
130 2dl8_A SLIT-ROBO RHO GTPase-ac 26.2 62 0.0021 18.4 2.9 15 21-35 27-41 (72)
131 3mjj_A Predicted acetamidase/f 26.1 85 0.0029 24.0 4.4 30 22-57 71-100 (301)
132 3exz_A MAOC-like dehydratase; 26.0 51 0.0017 21.6 2.8 16 21-36 91-106 (154)
133 2v1q_A SLA1, cytoskeleton asse 26.0 39 0.0013 18.3 1.9 12 21-32 20-31 (60)
134 2x3w_D Syndapin I, protein kin 25.9 34 0.0012 18.6 1.7 12 21-32 21-32 (60)
135 1zlm_A Osteoclast stimulating 25.8 39 0.0013 18.3 1.9 13 21-33 21-33 (58)
136 1y0m_A 1-phosphatidylinositol- 25.7 37 0.0013 18.7 1.8 13 21-33 21-33 (61)
137 4ayb_H DNA-directed RNA polyme 25.7 37 0.0013 21.3 1.9 13 21-33 56-68 (84)
138 3db3_A E3 ubiquitin-protein li 25.4 1.6E+02 0.0053 20.8 5.3 38 18-56 89-126 (161)
139 2nn6_I 3'-5' exoribonuclease C 25.3 53 0.0018 23.4 3.0 15 22-36 136-150 (209)
140 3esi_A Uncharacterized protein 25.2 67 0.0023 21.3 3.3 18 19-36 75-92 (129)
141 2kxc_A Brain-specific angiogen 25.1 36 0.0012 19.1 1.7 12 21-32 25-36 (67)
142 1uj0_A Signal transducing adap 25.0 41 0.0014 18.6 1.9 13 21-33 23-35 (62)
143 2drm_A Acanthamoeba myosin IB; 24.9 42 0.0014 18.1 1.9 13 21-33 21-33 (58)
144 2rde_A Uncharacterized protein 24.9 1.7E+02 0.006 20.4 5.7 37 19-55 175-211 (251)
145 1oot_A Hypothetical 40.4 kDa p 24.8 37 0.0013 18.5 1.7 13 21-33 21-33 (60)
146 2ew3_A SH3-containing GRB2-lik 24.8 48 0.0016 18.9 2.2 14 21-34 21-34 (68)
147 2jte_A CD2-associated protein; 24.8 41 0.0014 18.6 1.9 13 21-33 24-36 (64)
148 2ak5_A RHO guanine nucleotide 24.5 42 0.0014 18.5 1.9 13 21-33 24-36 (64)
149 3c0c_A Endophilin-A2; endocyto 24.5 52 0.0018 18.8 2.4 14 21-34 31-44 (73)
150 1k1z_A VAV; SH3, proto-oncogen 24.5 41 0.0014 19.5 1.9 13 21-33 36-48 (78)
151 1i07_A Epidermal growth factor 24.2 38 0.0013 18.5 1.7 12 21-32 19-30 (60)
152 2j6f_A CD2-associated protein; 24.2 51 0.0017 18.2 2.2 13 21-33 19-31 (62)
153 1ue9_A Intersectin 2; beta bar 24.1 53 0.0018 19.0 2.4 14 21-34 25-38 (80)
154 4f14_A Nebulette; SH3 domain, 24.0 56 0.0019 17.8 2.4 14 20-33 23-36 (64)
155 3bnv_A CJ0977; virulence facto 23.9 1E+02 0.0034 20.3 4.0 27 21-47 99-125 (152)
156 2ebp_A SAM and SH3 domain-cont 23.9 40 0.0014 19.5 1.8 14 21-34 29-42 (73)
157 2l0a_A STAM-1, signal transduc 23.9 72 0.0025 18.6 2.9 14 21-34 35-48 (72)
158 1ruw_A Myosin-3 isoform, MYO3; 23.9 52 0.0018 18.5 2.2 14 21-34 21-34 (69)
159 1w1f_A Tyrosine-protein kinase 23.8 44 0.0015 18.4 1.9 14 21-34 25-38 (65)
160 2vwf_A Growth factor receptor- 23.8 43 0.0015 18.1 1.8 13 21-33 20-32 (58)
161 2iim_A Proto-oncogene tyrosine 23.5 46 0.0016 18.3 1.9 13 21-33 24-36 (62)
162 2ifr_A Scytalidopepsin B; enzy 23.4 1.9E+02 0.0064 20.8 5.6 15 21-35 82-96 (206)
163 2ege_A Uncharacterized protein 23.2 45 0.0015 19.3 1.9 12 21-32 32-43 (75)
164 1zuu_A BZZ1 protein; SH3 domai 23.2 33 0.0011 18.5 1.2 14 21-34 19-32 (58)
165 1spk_A RSGI RUH-010, riken cDN 23.0 41 0.0014 19.1 1.7 12 21-32 26-37 (72)
166 2nwm_A Vinexin; cell adhesion; 23.0 41 0.0014 19.1 1.7 13 21-33 19-31 (65)
167 2ydl_A SH3 domain-containing k 22.9 41 0.0014 19.3 1.7 13 21-33 20-32 (69)
168 3d0f_A Penicillin-binding 1 tr 22.8 33 0.0011 21.5 1.3 10 22-31 84-93 (106)
169 2hd9_A UPF0310 protein PH1033; 22.7 1.1E+02 0.0036 20.5 4.0 36 18-53 31-68 (145)
170 1b07_A Protein (proto-oncogene 22.7 42 0.0014 19.0 1.7 13 21-33 21-33 (65)
171 3bbo_M Ribosomal protein L14; 22.7 1.1E+02 0.0037 20.5 3.9 32 22-53 33-66 (121)
172 2ecz_A Sorbin and SH3 domain-c 22.7 51 0.0018 18.5 2.1 15 21-35 25-39 (70)
173 2crv_A IF-2MT, translation ini 22.6 39 0.0014 22.7 1.7 16 17-32 84-100 (120)
174 4glm_A Dynamin-binding protein 22.6 60 0.002 18.2 2.3 15 20-34 30-44 (72)
175 1f56_A Plantacyanin; cupredoxi 22.5 39 0.0013 21.1 1.6 13 21-33 18-30 (91)
176 2k9g_A SH3 domain-containing k 22.3 49 0.0017 18.8 1.9 13 21-33 27-39 (73)
177 1gl5_A Tyrosine-protein kinase 22.2 44 0.0015 18.8 1.7 13 21-33 20-32 (67)
178 1tuc_A Alpha-spectrin; capping 22.2 47 0.0016 18.5 1.8 14 21-34 7-20 (63)
179 4esr_A Jouberin; AHI-1, AHI1, 22.2 62 0.0021 18.1 2.4 14 21-34 24-37 (69)
180 1kl9_A Eukaryotic translation 22.2 67 0.0023 22.5 2.9 21 21-41 61-81 (182)
181 1wyx_A CRK-associated substrat 22.0 50 0.0017 18.5 1.9 13 21-33 21-33 (69)
182 2dbk_A CRK-like protein; struc 21.9 57 0.0019 19.4 2.2 14 21-34 36-49 (88)
183 2lx7_A GAS-7, growth arrest-sp 21.9 35 0.0012 19.5 1.2 13 20-32 21-33 (60)
184 2a19_A EIF-2- alpha, eukaryoti 21.8 71 0.0024 22.1 3.0 21 21-41 61-81 (175)
185 2oaw_A Spectrin alpha chain, b 21.7 1.1E+02 0.0037 16.6 3.9 13 21-33 19-31 (65)
186 2vv5_A MSCS, small-conductance 21.7 51 0.0017 24.2 2.3 11 20-30 128-138 (286)
187 3j21_U 50S ribosomal protein L 21.6 1E+02 0.0035 20.5 3.6 55 21-84 45-101 (121)
188 1x2p_A Protein arginine N-meth 21.5 47 0.0016 18.6 1.7 13 21-33 25-37 (68)
189 3eg3_A Proto-oncogene tyrosine 21.5 47 0.0016 18.1 1.7 14 20-33 22-35 (63)
190 2dl7_A KIAA0769 protein; SH3 d 21.5 51 0.0018 18.8 1.9 13 21-33 26-38 (73)
191 2jt4_A Cytoskeleton assembly c 21.5 46 0.0016 18.7 1.7 12 21-32 24-35 (71)
192 2ke9_A Caskin-2; SH3 domain, A 21.4 45 0.0015 20.0 1.7 12 21-32 37-48 (83)
193 2csi_A RIM-BP2, RIM binding pr 21.3 52 0.0018 19.0 1.9 13 21-33 32-44 (76)
194 2ed1_A 130 kDa phosphatidylino 21.1 47 0.0016 19.2 1.7 12 21-32 28-39 (76)
195 1qp2_A Protein (PSAE protein); 21.1 1.2E+02 0.0042 18.6 3.6 38 22-64 2-39 (70)
196 2kgt_A Tyrosine-protein kinase 21.1 58 0.002 18.4 2.1 13 21-34 28-40 (72)
197 2epd_A RHO GTPase-activating p 21.1 75 0.0026 18.3 2.6 15 21-35 28-42 (76)
198 2cbp_A Cucumber basic protein; 21.0 43 0.0015 21.0 1.6 13 21-33 23-35 (96)
199 2djq_A SH3 domain containing r 21.0 53 0.0018 18.4 1.9 12 21-32 25-36 (68)
200 2f4l_A Acetamidase, putative; 21.0 1.4E+02 0.0049 22.6 4.8 31 21-57 72-102 (297)
201 2b86_A Cytoplasmic protein NCK 20.9 48 0.0016 19.1 1.7 13 21-33 22-34 (67)
202 2vkn_A Protein SSU81; membrane 20.9 54 0.0019 18.5 1.9 11 21-31 25-35 (70)
203 2ed0_A ABL interactor 2; coile 20.9 67 0.0023 18.6 2.4 14 21-34 35-48 (78)
204 1x2k_A OSTF1, osteoclast stimu 20.9 55 0.0019 18.4 1.9 13 21-33 25-37 (68)
205 2dl3_A Sorbin and SH3 domain-c 20.8 51 0.0017 18.4 1.8 13 21-33 25-37 (68)
206 1x69_A Cortactin isoform A; SH 20.8 68 0.0023 18.6 2.4 14 21-34 35-48 (79)
207 2dl4_A Protein STAC; SH3 domai 20.7 55 0.0019 18.4 1.9 13 21-33 25-37 (68)
208 2dnu_A RUH-061, SH3 multiple d 20.5 50 0.0017 18.6 1.7 12 21-32 26-37 (71)
209 2ct3_A Vinexin; SH3 domian, st 20.5 55 0.0019 18.3 1.8 13 21-33 25-37 (70)
210 2eqs_A ATP-dependent RNA helic 20.4 63 0.0022 20.1 2.3 14 22-35 61-74 (103)
211 3m7n_A Putative uncharacterize 20.4 53 0.0018 22.7 2.1 15 20-34 110-124 (179)
212 2dmo_A Neutrophil cytosol fact 20.3 54 0.0018 18.5 1.8 14 21-34 25-38 (68)
213 3i5r_A Phosphatidylinositol 3- 20.2 56 0.0019 19.2 1.9 11 21-31 23-33 (83)
214 2fei_A CD2-associated protein; 20.1 38 0.0013 19.2 1.1 12 21-32 19-30 (65)
215 2egc_A SH3 and PX domain-conta 20.1 50 0.0017 19.1 1.7 14 21-34 27-40 (75)
No 1
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=100.00 E-value=1.8e-45 Score=254.05 Aligned_cols=94 Identities=54% Similarity=0.918 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCC
Q psy3777 2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP 81 (99)
Q Consensus 2 ~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP 81 (99)
|+++.+|++|| +.++|+|+|||||+|++.+.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||
T Consensus 2 ~~i~~~e~~~~---~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP 78 (114)
T 3r8s_P 2 NIIKQLEQEQM---KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSP 78 (114)
T ss_dssp CHHHHHHGGGC---CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCT
T ss_pred hHHHHHHHHHh---ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCC
Confidence 68999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEeee-eeeee
Q psy3777 82 IISSIIVKRRGD-RNAYI 98 (99)
Q Consensus 82 ~I~~I~V~~~~k-rra~l 98 (99)
.|++|||+++|| |||+|
T Consensus 79 ~I~~IeV~r~gkvRRAKL 96 (114)
T 3r8s_P 79 VVDSISVKRRGAVRKAKL 96 (114)
T ss_dssp TEEEEEEEECEECCSSCC
T ss_pred ccceEEEEEccccchhhe
Confidence 999999999999 99998
No 2
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=100.00 E-value=4.9e-45 Score=264.94 Aligned_cols=98 Identities=38% Similarity=0.655 Sum_probs=94.2
Q ss_pred CchHHHHHHHHHHhh-cCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeec
Q psy3777 1 MNLIQKIEQEEIIRL-KKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLY 79 (99)
Q Consensus 1 m~li~~~e~~~~~~~-~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~ 79 (99)
||+|+.+|++|+.++ ++++|+|+|||||+|++++.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|
T Consensus 5 M~li~~le~eqlk~l~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fplh 84 (166)
T 2zjr_M 5 IKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA 84 (166)
T ss_dssp CCCCHHHHHHHTTGGGCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHHHHHhhccccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecC
Confidence 789999999999433 3799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEEEEEeee-eeeee
Q psy3777 80 SPIISSIIVKRRGD-RNAYI 98 (99)
Q Consensus 80 SP~I~~I~V~~~~k-rra~l 98 (99)
||.|++|+|+++|| |||||
T Consensus 85 SP~I~kIEVvrrGKVRRAKL 104 (166)
T 2zjr_M 85 SPLVNQVTIVERGKVRRAKL 104 (166)
T ss_dssp CTTEEEEEEEECCCCSSSCC
T ss_pred CCccceEEEEeccccchhhe
Confidence 99999999999999 99998
No 3
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=100.00 E-value=3.4e-44 Score=256.06 Aligned_cols=94 Identities=46% Similarity=0.795 Sum_probs=91.9
Q ss_pred chHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCC
Q psy3777 2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP 81 (99)
Q Consensus 2 ~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP 81 (99)
+||+.+|++|+ ++++|+|+|||||+|++.+.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||
T Consensus 5 ~li~~ie~~~~---~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl~SP 81 (146)
T 3v2d_T 5 ALIKLVESRYV---RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSP 81 (146)
T ss_dssp HHHHHHHHTTC---CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCT
T ss_pred HHHHHHHHHHh---hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCC
Confidence 47999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEeee-eeeee
Q psy3777 82 IISSIIVKRRGD-RNAYI 98 (99)
Q Consensus 82 ~I~~I~V~~~~k-rra~l 98 (99)
.|++|+|+++|| |||+|
T Consensus 82 ~I~~IeVvrrgkVRRAKL 99 (146)
T 3v2d_T 82 LIQKIDIVQRGRARRAKL 99 (146)
T ss_dssp TEEEEEEEECEECSSSCC
T ss_pred ccceEEEEecCccchhhe
Confidence 999999999999 99998
No 4
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.7e-40 Score=224.15 Aligned_cols=79 Identities=29% Similarity=0.538 Sum_probs=77.6
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCCccceEEEEEeee-eeee
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGD-RNAY 97 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP~I~~I~V~~~~k-rra~ 97 (99)
+|+|+|||+|+|++.+. |+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||.|++|||+++|| ||||
T Consensus 1 iP~f~~GDtv~V~~~i~-g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaK 79 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADP-YASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDS 79 (98)
T ss_pred CCccCCCCEEEEEEEEC-CCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCccccee
Confidence 69999999999999999 789999999999999999999999999999999999999999999999999999999 9999
Q ss_pred e
Q psy3777 98 I 98 (99)
Q Consensus 98 l 98 (99)
|
T Consensus 80 L 80 (98)
T 2ftc_K 80 L 80 (98)
T ss_pred E
Confidence 8
No 5
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=5.4e-39 Score=242.55 Aligned_cols=90 Identities=36% Similarity=0.622 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCCccc
Q psy3777 5 QKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIIS 84 (99)
Q Consensus 5 ~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP~I~ 84 (99)
+.+|++|+ ++++|+|+|||||+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||.|+
T Consensus 129 e~ie~~q~---kkdiPeFr~GDtV~V~vkI~E-~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLhSP~I~ 204 (233)
T 3bbo_R 129 KAVHAAEE---LRPVPGIRTGDIVQIRLEVPE-NKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIK 204 (233)
T ss_dssp THHHHTTC---CSCCSSSCCCSCCCCCCCBCC-CSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCBSSSSS
T ss_pred HHHHHHhh---ccCCCccCCCCEEEEEEEecc-CcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecCCCccc
Confidence 45555555 789999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeee-eeeee
Q psy3777 85 SIIVKRRGD-RNAYI 98 (99)
Q Consensus 85 ~I~V~~~~k-rra~l 98 (99)
+|+|+++|| |||||
T Consensus 205 kIEVvRrgKVRRAKL 219 (233)
T 3bbo_R 205 EIKVVSHRKVRKARL 219 (233)
T ss_dssp CCCCCCCSCCCCSCS
T ss_pred eEEEEeccccchhhh
Confidence 999999999 99998
No 6
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=90.00 E-value=1.2 Score=28.66 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=39.7
Q ss_pred CCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCC-------ccceEEEEEe
Q psy3777 23 VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP-------IISSIIVKRR 91 (99)
Q Consensus 23 ~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP-------~I~~I~V~~~ 91 (99)
..|+.|.++-. .-+-.|+|.+..+.. .++|+||+|.+ ..|+ |.+|| -|+++++++-
T Consensus 7 ~iGs~VSi~c~------d~lGvYQG~i~~vd~--~~~tItL~~~f-~NG~----~~~s~eVtls~~DI~~L~ii~~ 69 (84)
T 2vc8_A 7 WLGSIVSINCG------DSLGVYQGRVSAVDQ--VSQTISLTRPF-HNGV----KCLVPEVTFRAGDITELKILEI 69 (84)
T ss_dssp TTTCEEEEECC------TTTCEEEEEEEEEET--TTTEEEEEEEE-ETTE----ECSSSEEEEEGGGCSEEEEEEC
T ss_pred ccCCEEEEEEC------CCceEEEEEEEEecc--CCCeEEEehhh-hCCC----CCCCcEEEEEecChhheEEEec
Confidence 46888888753 334589999999874 46889999996 3454 44444 5778888764
No 7
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=87.17 E-value=3.1 Score=25.47 Aligned_cols=47 Identities=15% Similarity=0.324 Sum_probs=35.3
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEee
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL 78 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl 78 (99)
.|.|++||.|.-.+ ..+ +.|.+.|.++.+. .+++| .+.+ |.+.+...
T Consensus 4 ~~~~~vGd~vmArW--~D~-----~yYpA~I~si~~~---~~Y~V--~F~d-G~~etvk~ 50 (67)
T 3p8d_A 4 SSEFQINEQVLACW--SDC-----RFYPAKVTAVNKD---GTYTV--KFYD-GVVQTVKH 50 (67)
T ss_dssp -CCCCTTCEEEEEC--TTS-----CEEEEEEEEECTT---SEEEE--EETT-SCEEEEEG
T ss_pred CcccccCCEEEEEc--CCC-----CEeeEEEEEECCC---CeEEE--EEeC-CceEEEeH
Confidence 57899999999997 333 6999999999986 35888 4556 76666543
No 8
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=76.60 E-value=3.4 Score=28.36 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=41.2
Q ss_pred CCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEE--EEeecCeeEEEEEeecCCccceEEEEEee
Q psy3777 24 TGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV--RKISYNEGIERTFQLYSPIISSIIVKRRG 92 (99)
Q Consensus 24 ~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftl--R~i~~gvGVEr~fpl~SP~I~~I~V~~~~ 92 (99)
.|..|.|++. .| ..++|.+...-+. ++|| +++..... .+-++.|++++|+...
T Consensus 11 lGy~V~v~Lk--Dg-----s~~qG~I~~vd~k----~LtL~~~~a~~s~~-----~I~asdI~DLkVl~~~ 65 (125)
T 4a53_A 11 YGSNVEVLLN--ND-----SKARGVITNFDSS----NSILQLRLANDSTK-----SIVTKDIKDLRILPKN 65 (125)
T ss_dssp TTCEEEEEET--TS-----CEEEEEEEEEETT----TTEEEEEETTTEEE-----EEEGGGEEEEEECCSC
T ss_pred cCceEEEEEC--CC-----CEeeEEEEeecCC----eeEEeccccccccc-----eeecccccceeeeecc
Confidence 4888999886 34 3899999998754 4566 99865555 8899999999998754
No 9
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=74.58 E-value=2.2 Score=34.77 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=31.9
Q ss_pred CCCCCc-CCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEE
Q psy3777 17 KNIPDF-VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV 63 (99)
Q Consensus 17 ~~~p~f-~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftl 63 (99)
..+|.+ .+||+|.++= =++|.|.|-..+.-+.+.+++|-|
T Consensus 108 e~LP~V~~~GDII~Lhr-------vkIq~~ng~~~~v~~~~~~Sswav 148 (495)
T 1jb7_A 108 EDLPIIHRAGDIIRVHR-------ATLRLYNGQRQFNANVFYSSSWAL 148 (495)
T ss_dssp GGSCCCCEETCEEEEEE-------EEEEEETTEEEEEEETTTTCEEEE
T ss_pred HHCCCCCCCCCEEEEEE-------EEEEEECCcEEEEecCCCceEEEE
Confidence 579999 7999999963 246788888888778787788876
No 10
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=72.88 E-value=16 Score=23.36 Aligned_cols=48 Identities=17% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEee
Q psy3777 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL 78 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl 78 (99)
.-+.|.+||.|.-.+ ..+ +.|.+.|.++-+.| +++| .+.+ |+..+...
T Consensus 18 ~~~~f~vGd~VlArW--~D~-----~yYPAkI~sV~~~~---~YtV--~F~D-G~~etvk~ 65 (85)
T 3qii_A 18 GSSEFQINEQVLACW--SDC-----RFYPAKVTAVNKDG---TYTV--KFYD-GVVQTVKH 65 (85)
T ss_dssp ---CCCTTCEEEEEC--TTS-----CEEEEEEEEECTTS---EEEE--EETT-SCEEEEEG
T ss_pred CCcccccCCEEEEEe--CCC-----CEeeEEEEEECCCC---eEEE--EEeC-CCeEEecH
Confidence 356899999999998 333 69999999999874 5888 4566 76666543
No 11
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=70.15 E-value=5.5 Score=26.99 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=33.0
Q ss_pred CCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEe----cC-C-CcceEEEEEeecCeeEEEEEeec
Q psy3777 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRR----NK-G-LNSNFIVRKISYNEGIERTFQLY 79 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r----~~-g-~~stftlR~i~~gvGVEr~fpl~ 79 (99)
..++|++|++|.+ +|. +|. |+... ++ | .--...+||+..|.-+|.+|+-.
T Consensus 12 ~~~~lr~G~~I~~-----~g~-----p~~--V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 67 (136)
T 2eif_A 12 NVGSLKVGQYVMI-----DGV-----PCE--IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 67 (136)
T ss_dssp EGGGCCTTSEEEE-----TTE-----EEE--EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETT
T ss_pred EHHHCcCCCEEEE-----CCE-----EEE--EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCC
Confidence 4578999999866 232 443 33322 22 3 12346799999999999999753
No 12
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=70.00 E-value=2.1 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=26.7
Q ss_pred CCcCCCCEEEEEEEEecCCceeeceE----EEEEEEEec
Q psy3777 20 PDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRN 54 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvIa~r~ 54 (99)
|.|.+||.|+|.-.... .-+|...| +|+|++.++
T Consensus 117 ~~F~vGd~Vrv~~~~~~-gHtRlP~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVP-GHTRFPAYIRGKAGVVVGISP 154 (206)
T ss_dssp TCCCTTCEEEECCCCCS-SCCSSCGGGTTCEEEEEEECC
T ss_pred CCCcCCCEEEeCCCCCC-CcccccHhhcCCeeEEEEEec
Confidence 56999999999866554 46787776 799998875
No 13
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=65.62 E-value=6.8 Score=24.12 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.1
Q ss_pred eeeceEEEEEEEEecCCCcceEEEEEee-cCeeEEEE
Q psy3777 40 KRIQAYEGIVISRRNKGLNSNFIVRKIS-YNEGIERT 75 (99)
Q Consensus 40 ~r~q~f~GvvIa~r~~g~~stftlR~i~-~gvGVEr~ 75 (99)
.|.+.|-|.|.+.....-..++.+||-+ -|-++|-.
T Consensus 3 ~~~~~fvG~V~~~~~~~g~~~ie~rN~f~~GD~iEi~ 39 (89)
T 4he6_A 3 KTTREFAGLVLGYDPETGIATVQQRNHFRPGDEVEFF 39 (89)
T ss_dssp CSGGGCSEEEEEEETTTTEEEEEESSCBCTTCEEEEE
T ss_pred ccccEEEEEEEEEeCCCCEEEEEEcCCcCCCCEEEEE
Confidence 4568899999997654224678899876 47889844
No 14
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=64.95 E-value=20 Score=26.99 Aligned_cols=50 Identities=26% Similarity=0.302 Sum_probs=38.7
Q ss_pred eeeceEEEEEEEEecCCCcceEEEEE-eecCeeEEEEEeecCCccceEEEEEeee
Q psy3777 40 KRIQAYEGIVISRRNKGLNSNFIVRK-ISYNEGIERTFQLYSPIISSIIVKRRGD 93 (99)
Q Consensus 40 ~r~q~f~GvvIa~r~~g~~stftlR~-i~~gvGVEr~fpl~SP~I~~I~V~~~~k 93 (99)
.+.++|+|..+-.++.++.+ +.++- +.+|.-.|+.-.|.-|.- ||+|+|.
T Consensus 15 ~~~lnY~g~fV~~~~~~i~s-~ri~H~~~~~~~~e~L~~LdG~~r---eviR~~~ 65 (295)
T 3m4w_A 15 SQSLNYELSFISINKQGVES-LRYRHARLDNRPLAQLLQMDGPRR---EVVQRGN 65 (295)
T ss_dssp HHHSEEEEEEEEEETTEEEE-EEEEEEECSSSEEEEEEECSSSCC---EEEEETT
T ss_pred HhhCCeEEEEEEEeCCeEEE-EEEEEEeeCCEEEEEEEEcCCCcE---EEEEECC
Confidence 45689999999999877754 55554 455566999999999874 7888875
No 15
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=62.02 E-value=17 Score=24.07 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=40.1
Q ss_pred CCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEee-cCe-----eEEEEEeecCCccceEEEEEee
Q psy3777 23 VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKIS-YNE-----GIERTFQLYSPIISSIIVKRRG 92 (99)
Q Consensus 23 ~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~-~gv-----GVEr~fpl~SP~I~~I~V~~~~ 92 (99)
-.|..|.|+-.. -+-.|||.+.++. .++++|++.+ +|+ -.|-+|.- --|++++++...
T Consensus 10 wiG~~VSI~C~d------~LGVyQG~I~~V~----~~~ItL~kaFrNGiplk~~~~EVtLsa--~DI~~L~IIe~~ 73 (103)
T 2rm4_A 10 WIGCAVSIACDE------VLGVFQGLIKQIS----AEEITIVRAFRNGVPLRKQNAEVVLKC--TDIRSIDLIEPA 73 (103)
T ss_dssp GTTCEEEEEECT------TTCEEEEEEEEEE----TTEEEEEEEEETTEECSCSSSCEEEET--TTEEEEEEEECC
T ss_pred eeceEEEEeeCC------cceEeeEEEEEcc----cceeEEhhhhhcCcCcCCCCceEEEEe--cchhheeeeccc
Confidence 368888888642 3459999999998 4679999976 344 24666533 347777777643
No 16
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=60.72 E-value=6.7 Score=28.34 Aligned_cols=38 Identities=8% Similarity=0.332 Sum_probs=27.5
Q ss_pred CCCCCc-CCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEE
Q psy3777 17 KNIPDF-VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV 63 (99)
Q Consensus 17 ~~~p~f-~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftl 63 (99)
..+|.+ .+||+|.++=. ++|.|.|-+.+.-+.+. +|.+
T Consensus 95 e~LP~V~~~GDIIlL~rv-------kiq~~~g~~~~v~~~~~--s~a~ 133 (187)
T 1qzg_A 95 NDLPVIKQVGQPLLLHQI-------TLRSYRDRTQGLSKDQF--RYAL 133 (187)
T ss_dssp SCSCCCCSTTCEEEEEEE-------EEEEETTEEEEEEEEEE--EEEE
T ss_pred hhCCCCCCCCCEEEEEEE-------EEEEECCeEEEEEcCce--eEEE
Confidence 589998 99999999742 46778777777665542 4554
No 17
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=60.50 E-value=17 Score=29.48 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=26.5
Q ss_pred CCC--CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEE
Q psy3777 18 NIP--DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV 63 (99)
Q Consensus 18 ~~p--~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftl 63 (99)
.+| .|++||.|.|.- .+....+.++|+|..+.. .+++|
T Consensus 75 ~l~~~~~~~Gd~v~~~~----~~~~~~~~~~g~v~~~~~----~~i~v 114 (646)
T 4b3f_X 75 ALPSNSFTSGDIVGLYD----AANEGSQLATGILTRVTQ----KSVTV 114 (646)
T ss_dssp CCCCCCCCTTCEEEEEE----TTTTSCCCEEEEEEEEET----TEEEE
T ss_pred CCccCCCCCCCEEEEEe----cCCCCCceEEEEEEEEeC----CEEEE
Confidence 455 599999998853 223345689999999875 34555
No 18
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=58.90 E-value=21 Score=20.14 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=21.3
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN 54 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~ 54 (99)
+|.+||.|+|. +|. ..-|+|.+.....
T Consensus 4 ~~~~Gd~V~V~----~Gp---f~g~~g~v~~v~~ 30 (58)
T 1nz9_A 4 AFREGDQVRVV----SGP---FADFTGTVTEINP 30 (58)
T ss_dssp SCCTTCEEEEC----SGG---GTTCEEEEEEEET
T ss_pred ccCCCCEEEEe----ecC---CCCcEEEEEEEcC
Confidence 68999999884 353 4689999999875
No 19
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=55.60 E-value=12 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=19.2
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVI 50 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI 50 (99)
...|||++.+++.+.+ .+.+.-.|++.+.
T Consensus 100 pV~pGd~l~~~~~v~~-~~~~~~~~~~~~~ 128 (146)
T 3d6x_A 100 PVRPGDRLDYEMSVVK-NRGNMWIFKGQAF 128 (146)
T ss_dssp CCCTTCEEEEEEEEEE-EETTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE-eeCCEEEEEEEEE
Confidence 4789999999998864 2333445555443
No 20
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=55.16 E-value=16 Score=24.47 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=36.0
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCC--CcceEEEEEeecCeeEEEEEee----cCCccceE
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG--LNSNFIVRKISYNEGIERTFQL----YSPIISSI 86 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g--~~stftlR~i~~gvGVEr~fpl----~SP~I~~I 86 (99)
..+|+.|.+|.+ +|.--++-.|+ -.+-++| .--.+.+||+..|--+|.+||- ..|.|++-
T Consensus 11 ~~~lrkG~~i~~-----~g~p~~Vve~~---~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~ 76 (136)
T 1bkb_A 11 AGELKEGSYVVI-----DGEPCRVVEIE---KSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKF 76 (136)
T ss_dssp GGGCCTTCEEEE-----TTEEEEEEEEE---EECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEE
T ss_pred HHHccCCCEEEE-----CCEEEEEEEEE---EecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEE
Confidence 458999999865 24322222222 1122332 2335679999999999999984 33555443
No 21
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=54.50 E-value=8.8 Score=26.03 Aligned_cols=53 Identities=17% Similarity=0.089 Sum_probs=32.0
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecC-CC-cceEEEEEeecCeeEEEEEeec
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK-GL-NSNFIVRKISYNEGIERTFQLY 79 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~-g~-~stftlR~i~~gvGVEr~fpl~ 79 (99)
..+|+.|.+|.+ +|.--++-.|+= .+-++ |- --.+.+||+..|.-+|.+|+-.
T Consensus 9 a~~lkkG~~i~~-----~g~p~~Vve~~~---~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 63 (138)
T 1iz6_A 9 VSKLKPGRYIII-----DDEPCRIVNITV---SSPGKHGSAKARIEAVGIFDGKVRSIVKPTS 63 (138)
T ss_dssp GGGCCTTSEEEE-----TTEEEEEEEEEE---CCCCTTSCCEEEEEEEETTTCCEEEEEEETT
T ss_pred HHHccCCCEEEE-----CCEEEEEEEEEe---ecCCCCCceEEEEEEEECCCCCEEEEEecCC
Confidence 458999999865 243222222221 11122 32 2456799999999999999743
No 22
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=53.96 E-value=13 Score=25.39 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=18.9
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIV 49 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~Gvv 49 (99)
.+.|||++.+++.+.. .+...-.|+|.+
T Consensus 110 ~V~PGd~L~i~v~~~~-~~~~~~~~~~~~ 137 (160)
T 4h4g_A 110 VVEPGDQLILNVTFER-YIRGIWKFKAVA 137 (160)
T ss_dssp CCCTTCEEEEEEEEEE-EETTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE-eeCCEEEEEEEE
Confidence 4789999999988753 234455565543
No 23
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.70 E-value=6.4 Score=22.93 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEec
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN 54 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~ 54 (99)
-..|.+||.|+|. +|. ..-|+|+|..+.+
T Consensus 5 ~~~f~~GD~V~V~----~Gp---f~g~~G~V~evd~ 33 (59)
T 2e6z_A 5 SSGFQPGDNVEVC----EGE---LINLQGKILSVDG 33 (59)
T ss_dssp CSSCCTTSEEEEC----SST---TTTCEEEECCCBT
T ss_pred cccCCCCCEEEEe----ecC---CCCCEEEEEEEeC
Confidence 3469999999985 454 4689999999885
No 24
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=53.19 E-value=14 Score=23.65 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=15.8
Q ss_pred CCCCCcCCCCEEEEE-EEEec
Q psy3777 17 KNIPDFVTGDTIIVN-LNVIE 36 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~-~~i~e 36 (99)
.+.+.|.+||+|++. .++.+
T Consensus 56 ~~~~~~~~G~~V~i~n~~v~~ 76 (109)
T 2kbn_A 56 AELPLLEQGESYLLRSVVVGE 76 (109)
T ss_dssp GCCCCCCTTCEEEEEEEEEEE
T ss_pred ccccccCCCCEEEEEEEEEEE
Confidence 467899999999998 55543
No 25
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=52.54 E-value=16 Score=24.98 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=20.3
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVI 50 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI 50 (99)
...|||++.+++.+.+ .+.+.-.|+|.+.
T Consensus 124 pV~PGD~L~i~v~v~~-~~~~~~~~~~~~~ 152 (171)
T 2gll_A 124 PVTPGDRLEYHLEVLK-HKGMIWQVGGTAQ 152 (171)
T ss_dssp CCCTTCEEEEEEEEEE-ESSSEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE-EeCCEEEEEEEEE
Confidence 5779999999998865 2344556666554
No 26
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=51.52 E-value=15 Score=21.93 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=15.3
Q ss_pred CcCCCCEEEEEEEEecCCcee
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKR 41 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r 41 (99)
.|++||.|+|.+.-.+.++.|
T Consensus 45 ~~~~Gd~V~v~V~~vd~~~~~ 65 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVRPEKRE 65 (80)
T ss_dssp GCCTTCEEEEEEEEEETTTTE
T ss_pred eeCCCCEEEEEEEEEECCCCE
Confidence 599999999998755443344
No 27
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=50.30 E-value=7.8 Score=26.49 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=26.1
Q ss_pred CCCCcCCCCEEEEEEEEecCCceeeceE----EEEEEEEec
Q psy3777 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRN 54 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvIa~r~ 54 (99)
.-|.|.+||.|+|.-... ..-.|+..| .|+|.+..+
T Consensus 33 ~~prF~vGDrVrvr~~~p-~gHtRlP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 33 GKSKFNVGDRVRIKDLPD-LFYTRTMTYTRGATGTIVRLVY 72 (126)
T ss_dssp CSCSSCTTCEEEECCCCC-SSCCSSCGGGTTCEEEEEEEEE
T ss_pred CCCccCCCCEEEEccCCC-CCceeccHHhCCCEEEEEEEec
Confidence 357899999999986544 346777766 677776653
No 28
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=48.89 E-value=39 Score=22.15 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=31.8
Q ss_pred CCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEE
Q psy3777 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIE 73 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVE 73 (99)
-.+.+||.|.+.+.+.+. .++ -..+|.|.-+.-.|-.. +--.|+||+
T Consensus 40 ~~~~~G~~V~l~l~Lp~~-~~~-i~~~GkVvWi~p~~~~~-----~~p~G~GVq 86 (117)
T 3cnr_A 40 KRYMLGDEVFLLLTLPDS-SER-LPVAGKVIWTTPAGAQG-----NRAAGIGVQ 86 (117)
T ss_dssp SCCCTTCEEEEEEECTTC-SCE-EEEEEEEEEEECC-----------CCEEEEE
T ss_pred CccCCCCEEEEEEEcCCC-Cce-EEEEEEEEEecCCCCCC-----CCCCceEEE
Confidence 358999999999999743 233 35679999998766542 336788987
No 29
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=46.02 E-value=24 Score=28.29 Aligned_cols=44 Identities=30% Similarity=0.562 Sum_probs=29.4
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecC--eeEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYN--EGIE 73 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~g--vGVE 73 (99)
.+.+||.|+|... + ..|+|++|-....+ +....+=|.-+| +|+.
T Consensus 15 ~~~~gd~~~~~~~---~-----~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~ 60 (435)
T 2d6f_A 15 SIDVGDMVLVEKP---D-----VTYEGMVLDRADDA-DDRHIVLKLENGYNIGVE 60 (435)
T ss_dssp TCCTTCEEEEECS---S-----CEEEEEECCCCTTS-CSSEEEEECTTSCEEEEE
T ss_pred CCCCCCEEEEEEC---C-----eEEEEEEecCcccC-CCCeEEEEccCceeeeec
Confidence 5789999998641 2 79999999654433 334444466655 5665
No 30
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=44.46 E-value=24 Score=23.91 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=23.6
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecC
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~ 55 (99)
.+.||+.+.|++.-.. .+.|.|..|.-+..
T Consensus 34 ~y~pG~~~~VtL~~~~-----~~~F~GFllqAr~~ 63 (149)
T 2zou_A 34 FYKPGTSYRVTLSAAP-----PSYFRGFTLIALRE 63 (149)
T ss_dssp SBCTTCEEEEEEEECT-----TCCBSEEEEEEEET
T ss_pred eEcCCCcEEEEEeccC-----CCceEEEEEEEEec
Confidence 4899999999987322 35799999988764
No 31
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=44.45 E-value=12 Score=23.29 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=14.2
Q ss_pred cCCCCCcCCCCEEEEEEEE
Q psy3777 16 KKNIPDFVTGDTIIVNLNV 34 (99)
Q Consensus 16 ~~~~p~f~~GD~v~V~~~i 34 (99)
+++.-.+.|||.|.|....
T Consensus 48 Rk~~I~Il~GD~V~ve~~~ 66 (79)
T 3i4o_A 48 RQHYIRILPEDRVVVELSP 66 (79)
T ss_dssp HHTTCCCCTTCEEEEEEET
T ss_pred ecCCccCCCCCEEEEEECc
Confidence 3444468999999998864
No 32
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=44.41 E-value=28 Score=23.21 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=31.4
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCe--eEEE
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNE--GIER 74 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gv--GVEr 74 (99)
...|.+||.|+|. +|. ..-|+|.|....... ...+|.=...|- .||.
T Consensus 89 ~~~~~~Gd~VrI~----~Gp---f~g~~g~V~~vd~~k--~~v~V~v~~~gr~tpvel 137 (152)
T 3p8b_B 89 VSGLEPGDLVEVI----AGP---FKGQKAKVVKIDESK--DEVVVQFIDAIVPIPVTI 137 (152)
T ss_dssp TTTCCTTCEEEEC----SST---TTTCEEEEEEEETTT--TEEEEEESSCSSCCEEEE
T ss_pred cccCCCCCEEEEe----eec---CCCCEEEEEEEeCCC--CEEEEEEEecceeEEEEE
Confidence 4579999999985 353 568999999998654 334444344443 4553
No 33
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=44.29 E-value=20 Score=22.96 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=20.9
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcce
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~st 60 (99)
.|++||.|+|.+.-.+.++.+ +-++.+...++++
T Consensus 67 ~~~~Gd~V~vkV~~vd~~~~~------i~Lslk~~~l~~~ 100 (119)
T 1wi5_A 67 KLKVGQYLNCIVEKVKGNGGV------VSLSVGHSEVSTA 100 (119)
T ss_dssp CCCTTCEEEEEEEECCTTSCE------EEEECCCCCSCCC
T ss_pred EeCCCCEEEEEEEEEeCCCCE------EEEEEchhhcccc
Confidence 599999999998755433333 3344555444433
No 34
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=44.06 E-value=62 Score=23.56 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=38.2
Q ss_pred CCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCC-CcceEEEEEeecCeeEEEEEe----ecCCccceEE
Q psy3777 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG-LNSNFIVRKISYNEGIERTFQ----LYSPIISSII 87 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g-~~stftlR~i~~gvGVEr~fp----l~SP~I~~I~ 87 (99)
...+|+.|.+|.+ +|+--++..|+= .+-++| .--.+.+||+..|--+|++|+ +.-|.|++-+
T Consensus 33 ~a~dlKkG~~I~i-----dG~p~~Vve~~h---vKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~ 99 (215)
T 1yby_A 33 SAGDFKNGVTFEL-----DGQIFQVIEFQH---VKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKD 99 (215)
T ss_dssp EGGGCCTTCEEEE-----TTEEEEEEEEEE---ECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEE
T ss_pred EhhhccCCCEEEE-----CCEEEEEEEEEE---EcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEE
Confidence 3568999999866 243333333321 122333 223456999999999999998 6666665544
No 35
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=43.46 E-value=37 Score=23.18 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=28.1
Q ss_pred CCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEe
Q psy3777 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRR 53 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r 53 (99)
..+|.-.+||+|.|.++-.-.+ .|-+.+.++|+.-+
T Consensus 42 ~r~p~a~iGD~IvvsVKk~~p~-~kg~v~~AVIVRtk 77 (132)
T 1vq8_K 42 NRLPKAGLGDKITVSVTKGTPE-MRRQVLEAVVVRQR 77 (132)
T ss_dssp TCCCEECTTCEEEEEEEEECTT-TTTCEEEEEEEECS
T ss_pred cccCCCccCcEEEEEEEecCCC-CCCcEEEEEEEEcC
Confidence 4578889999999998754332 27789999999865
No 36
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=41.80 E-value=41 Score=20.94 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.6
Q ss_pred CCCCcCCCCEEEEEEEEec
Q psy3777 18 NIPDFVTGDTIIVNLNVIE 36 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~e 36 (99)
.+..|++||.|++.+...+
T Consensus 58 ~l~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 58 KMSEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp EECCCCTTCEEEEEEEEET
T ss_pred hhhcCCCCCEEEEEEEEeC
Confidence 4678999999999997654
No 37
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=41.66 E-value=33 Score=21.84 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=18.6
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEG 47 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~G 47 (99)
.+.|||+|.+.=++.++.....+...|
T Consensus 66 ~l~~Gdvv~i~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 66 DVGRGDYVRVRGYIREGYYGGLECTAN 92 (105)
T ss_dssp CCCTTCEEEEEEEEEECTTSSEEEEEE
T ss_pred ccCCCCEEEEEEEEEEccCCCEEEEeC
Confidence 799999999977777664334444444
No 38
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=41.23 E-value=27 Score=23.54 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.2
Q ss_pred CcCCCCEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIE 36 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (99)
...|||++.+++.+.+
T Consensus 120 pV~pGD~L~~~v~v~~ 135 (168)
T 1u1z_A 120 PVLPGDQLQLHAKFIS 135 (168)
T ss_dssp CCCTTCEEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEE
Confidence 4679999999998864
No 39
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1, structural genomics, PSI- protein structure initiative; HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1 b.106.1.1
Probab=40.84 E-value=44 Score=24.94 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=26.1
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV 63 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftl 63 (99)
.|.+||.|.|.+ |.. ..|.|+|-.+...+-..+.+|
T Consensus 56 ~~~~G~~v~v~i----G~~---~v~~G~Vd~v~~~~~~~~~~i 91 (361)
T 3cdd_A 56 PIKQGQACTVDI----GGE---RVITGYVDDWVPSYDESTITI 91 (361)
T ss_dssp CCCTTCEEEEEE----TTE---EEEEEEEEEEEEEECSSEEEE
T ss_pred ccCCCCEEEEEE----CCe---EEEEEEEeeEEccCCCCceEE
Confidence 578999999987 432 689999999887654333444
No 40
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=40.70 E-value=31 Score=23.26 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=22.4
Q ss_pred CCcCCCCEEEEEEEEecCCceeeceEEEEEEEEec
Q psy3777 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN 54 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~ 54 (99)
+.|..||.|+|.....+ .+---=+.|.|..+++
T Consensus 59 ~~f~~gd~VEV~~~~~d--~ep~gWw~a~I~~~kg 91 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANE--QEPCGWWLARVRMMKG 91 (128)
T ss_dssp -CCCTTCEEEEEECC-----CCCEEEEEEEEEEET
T ss_pred cCCCCCCEEEEEecCCC--CCcCccEEEEEEEeeC
Confidence 57999999999775432 2222368899988885
No 41
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=40.64 E-value=13 Score=27.32 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceE----EEEE-EEEec
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIV-ISRRN 54 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f----~Gvv-Ia~r~ 54 (99)
-|.|.+||.|+|.-... ..-.|...| +|+| ....+
T Consensus 120 ~~~F~vGd~Vrv~~~~~-~gHtR~P~YvRGk~G~I~~~~~g 159 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYV-PGHIRMPAYCRGRVGTISHRTTE 159 (212)
T ss_dssp CCCCCTTCEEEECCCCC-SSCCSCCGGGTTCEEEEEEECSS
T ss_pred CcccCCCCeEEEecCCC-CCcccccHHHCCCeEEEEEEecc
Confidence 57899999999986544 346777666 6888 55553
No 42
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=40.59 E-value=61 Score=21.71 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=31.2
Q ss_pred CCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCC--CcceEEEEEeecCeeEEEEEee
Q psy3777 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG--LNSNFIVRKISYNEGIERTFQL 78 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g--~~stftlR~i~~gvGVEr~fpl 78 (99)
-+|+.|.+|.+ +|.--++-.|+=+ +-++| .--.+.+||++.|--+|.+||-
T Consensus 10 ~~lrkG~~i~~-----~g~p~~Vve~~~~---KpGKgG~A~vr~k~knl~TG~~~e~tf~s 62 (138)
T 3cpf_A 10 SALRKNGFVVL-----KGRPCKIVEMSTS---KTGKHGHAKVHLVGIDIFTGKKYEDICPS 62 (138)
T ss_dssp GGCCTTSEEEE-----TTEEEEEEEEEEE---CC----CCEEEEEEEETTTCCEEEEEEET
T ss_pred HHCcCCCEEEE-----CCEEEEEEEEEec---cCCCCccEEEEEEEEECCCCCEEEEEeCC
Confidence 47899998865 3533333333321 22332 2335679999999999999964
No 43
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=40.39 E-value=36 Score=21.08 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.0
Q ss_pred CcCCCCEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIE 36 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (99)
.|.+||+|.|.=++.+
T Consensus 63 ~i~~Gdvv~i~g~v~~ 78 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVKQ 78 (97)
T ss_dssp CCCTTCEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE
Confidence 7999999999766654
No 44
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=40.03 E-value=29 Score=22.94 Aligned_cols=28 Identities=14% Similarity=0.593 Sum_probs=18.4
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIV 49 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~Gvv 49 (99)
...|||++.+++.+.+ .+...-.|+|.+
T Consensus 106 pV~PGd~L~i~~~v~~-~~~~~~~~~~~~ 133 (152)
T 4i83_A 106 QVIPGDQLVFEVELLT-SRRGIGKFNAVA 133 (152)
T ss_dssp CCCTTCEEEEEEEEEE-EETTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE-eeCCEEEEEEEE
Confidence 3589999999998764 233344555544
No 45
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=39.46 E-value=18 Score=26.79 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=13.5
Q ss_pred CCCCCc-CCCCEEEEE
Q psy3777 17 KNIPDF-VTGDTIIVN 31 (99)
Q Consensus 17 ~~~p~f-~~GD~v~V~ 31 (99)
..+|.+ .+||+|.++
T Consensus 62 ~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 62 EALPIIYKNGDIVRFH 77 (294)
T ss_dssp GGSCCCCSTTCEEEEE
T ss_pred HHCCCCCCCCCEEEEE
Confidence 579998 999999997
No 46
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=39.10 E-value=19 Score=24.45 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=13.9
Q ss_pred CCcCCCCEEEEEEEEec
Q psy3777 20 PDFVTGDTIIVNLNVIE 36 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~e 36 (99)
-+..|||+|.++..+.+
T Consensus 114 ~PV~~GDtl~~~~~V~~ 130 (159)
T 3k67_A 114 SPVRIGDVVRVEGVVSG 130 (159)
T ss_dssp SCCCTTCEEEEEEEEEE
T ss_pred CCcCCCCEEEEEEEEEE
Confidence 35889999999988764
No 47
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=38.59 E-value=73 Score=20.09 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=43.8
Q ss_pred CCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCCccceEEEEEeee
Q psy3777 24 TGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93 (99)
Q Consensus 24 ~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP~I~~I~V~~~~k 93 (99)
.|=.|+|+. .+| +.|+|++.+..--. -|+.|-|...+...=+.+ +....|++|+|+....
T Consensus 16 i~KeV~V~l--~dg-----~~y~G~l~tvDp~s--~sIvL~n~~~~~~~~~~i-I~G~aI~eI~v~~~~~ 75 (86)
T 1y96_A 16 IYKEVRVTA--SEK-----NEYKGWVLTTDPVS--ANIVLVNFLEDGSMSVTG-IMGHAVQTVETMNEGD 75 (86)
T ss_dssp TTCEEEEEE--TTT-----EEEEEEEEEECTTT--CCEEEEEECTTSCEEEEE-ECGGGEEEEEEEECCC
T ss_pred cCCEEEEEE--cCC-----CEEEEEEEEECCCc--eEEEEeecccCCeEEEEE-EecceEEEEEEecchh
Confidence 455666665 344 48999999998544 567788876666664444 7788999999998764
No 48
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=38.51 E-value=14 Score=27.25 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=26.1
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceE----EEEEEEEec
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRN 54 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvIa~r~ 54 (99)
-|.|.+||.|+|.-... ..-+|+..| +|+|...++
T Consensus 136 ~~~F~vGd~Vrv~~~~~-~~HtR~P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASP-KGHARRARYVRGKTGTVVKHHG 174 (226)
T ss_dssp CCSCCTTCEEEECCCCC-SSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCC-CCcccccHHhCCCeEEEEEEec
Confidence 57899999999986544 346777776 688877663
No 49
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=38.11 E-value=15 Score=27.09 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=25.5
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceE----EEEEEEEec
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRN 54 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvIa~r~ 54 (99)
-|.|.+||.|+|.-... ..-+|...| .|+|.+.++
T Consensus 128 ~~~F~vGd~Vrv~~~~~-~~HtR~P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 128 RARFAVGDKVRVLNKNP-VGHTRMPRYTRGKVGTVVIDHG 166 (219)
T ss_dssp CCCCCTTCEEEECCCCC-SSCCCSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCC-CCcccccHHHCCCeeEEEEEec
Confidence 37899999999976544 346777766 677777653
No 50
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=37.58 E-value=20 Score=23.40 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=13.3
Q ss_pred CCCCCcCCCCEEEEEE
Q psy3777 17 KNIPDFVTGDTIIVNL 32 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~~ 32 (99)
.++.+|++||+++..-
T Consensus 77 ~~~~dik~GD~Ie~ye 92 (99)
T 1d1n_A 77 KNFNDIKEGDVIEAYV 92 (99)
T ss_dssp TTCSSCSSCSEEEEEC
T ss_pred cCcCCCCCCCEEEEEE
Confidence 4788999999999853
No 51
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=37.34 E-value=69 Score=22.77 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=25.5
Q ss_pred CCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEe
Q psy3777 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRR 53 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r 53 (99)
|-....+||+|..++++.+ ++.|.|+=+-++
T Consensus 14 DKT~~~VGdII~Atv~vnn-----I~nfAGYQvNIK 44 (166)
T 2bm3_A 14 DRNKGEVGDILIGTVRINN-----IKNFAGFQVNIV 44 (166)
T ss_dssp SCSCCCTTCEEEEEEEEES-----CTTEEEEEEEEE
T ss_pred cCcceeeCCEEEEEEEEcc-----cccccceEEEEE
Confidence 4456799999999999864 689999987776
No 52
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=37.22 E-value=29 Score=22.09 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=13.2
Q ss_pred CcCCCCEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIE 36 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (99)
.|++||.|+|.+.-..
T Consensus 75 ~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 75 VVNVGDVVEVMVLDID 90 (115)
T ss_dssp TCCTTCEEEEEEEEEE
T ss_pred EECCCCEEEEEEEEEE
Confidence 4999999999987544
No 53
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=37.15 E-value=27 Score=21.35 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.1
Q ss_pred CCCCCcCCCCEEEEEEEEec
Q psy3777 17 KNIPDFVTGDTIIVNLNVIE 36 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~~~i~e 36 (99)
..+..|++||.|+..+...+
T Consensus 49 ~~l~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 49 TKMSEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp CEECCCCTTCEEEEEEEEET
T ss_pred hhhhcCCCCCEEEEEEEEeC
Confidence 34678999999999997654
No 54
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=36.81 E-value=16 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=25.6
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceE----EEEEEEEec
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAY----EGIVISRRN 54 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f----~GvvIa~r~ 54 (99)
-|.|.+||.|+|.-... ..-+|...| .|+|....+
T Consensus 139 ~~~F~vGd~Vrv~~~~~-~~HtR~P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 139 SPRFKVGERIKTKNIHP-TGHTRFPRYARDKYGVIDEVYG 177 (229)
T ss_dssp CCSCCTTCEEEECCCCC-SSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCC-CCcccCcHHHCCCeeEEEEEec
Confidence 47899999999976544 346777766 688777653
No 55
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=36.25 E-value=37 Score=22.64 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=17.1
Q ss_pred CcCCCCEEEEEEEEecCCce
Q psy3777 21 DFVTGDTIIVNLNVIEGTRK 40 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~ 40 (99)
.+.|||.|++.+.+.+|..-
T Consensus 70 nI~~~D~vkIiVTVSDG~sl 89 (110)
T 2xsk_A 70 NISPDDRVKIVVTVSDGQSL 89 (110)
T ss_dssp ECCTTCEEEEEEEEECSSSC
T ss_pred EecCCCcEEEEEEEeCCCeE
Confidence 47899999999999988653
No 56
>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein struct initiative, midwest center for structural genomics, unknown; 2.10A {Neisseria meningitidis MC58} SCOP: b.106.1.1 b.106.1.1
Probab=36.16 E-value=51 Score=25.06 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=26.5
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCc--ceEEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLN--SNFIVR 64 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~--stftlR 64 (99)
.|.+|+.|.|.+ |.. ..|.|+|-.+..++-. .+++++
T Consensus 52 ~~~~G~~i~v~i----G~~---~v~~G~Vd~v~~~~~~~~~ti~v~ 90 (381)
T 3d37_A 52 PDLSGESCEVVI----DGQ---IVMTGIIGSQRHGKSKGSRELSLS 90 (381)
T ss_dssp CCCTTCEEEEEE----TTE---EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred ccCCCCEEEEEE----CCe---EEEEEEEeEEEeeecCCCcEEEEE
Confidence 568999999986 432 5899999998876443 344444
No 57
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=35.89 E-value=32 Score=21.58 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=13.0
Q ss_pred CcCCCCEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIE 36 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (99)
.|++||.|.|.+.-.+
T Consensus 75 ~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 75 VLSVGDEVEAKFTGVD 90 (109)
T ss_dssp SCCTTCEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE
Confidence 3999999999886543
No 58
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=35.71 E-value=43 Score=23.54 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=18.1
Q ss_pred eeeceEEEEEEEEecCCCcceEEEE
Q psy3777 40 KRIQAYEGIVISRRNKGLNSNFIVR 64 (99)
Q Consensus 40 ~r~q~f~GvvIa~r~~g~~stftlR 64 (99)
-|-+.++|+|++-+ .+.|++|+
T Consensus 65 vRgr~l~G~VVS~K---MdKTIvV~ 86 (157)
T 2xzm_Q 65 IRGKIIKGLVISTK---MNRTVIIR 86 (157)
T ss_dssp CCSCEEEEEEEECC---STTEEEEE
T ss_pred eeeEEEEEEEEEec---CCccEEEE
Confidence 35689999999964 68999987
No 59
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=35.63 E-value=37 Score=18.36 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=11.2
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 19 s~~~Gd~i~v~~~~ 32 (59)
T 1yn8_A 19 RLAEGDIVFISYKH 32 (59)
T ss_dssp CBCTTCEEEEEEEE
T ss_pred CCCCCCEEEEEEcC
Confidence 59999999996543
No 60
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=35.40 E-value=66 Score=25.73 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=38.6
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecC--eeEEEEEeecCCccceEEEEEeee
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYN--EGIERTFQLYSPIISSIIVKRRGD 93 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~g--vGVEr~fpl~SP~I~~I~V~~~~k 93 (99)
.+.+||.|+|...- | ++ ...|+|++|-....+ +....+=|.-+| +|+.. -.+++|+++.++.
T Consensus 11 ~~~~gd~v~~~~~~--~-~~-~~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~------~~~~~~~~~~~~~ 74 (438)
T 1zq1_A 11 NINVGDFVRITKEE--D-GE-EVTYEGYIMPPYELS-AGDTLVLKLENGYNIGIAL------EKIRRIEVLERAK 74 (438)
T ss_dssp TCCTTCEEEEEEES--S-SS-EEECCEEECCCCTTC-CCSEEEEEETTSCEEEEEG------GGEEEEEEEECCC
T ss_pred CCCCCCEEEEEECC--C-cc-eeEEEEEEecCcccC-CCCeEEEEccCCceeeech------hhcceEEEeccCC
Confidence 47789999997642 1 11 248999999654433 334444466655 56642 2356677877664
No 61
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=35.21 E-value=33 Score=22.40 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.0
Q ss_pred CCcCCCCEEEEEEEEec
Q psy3777 20 PDFVTGDTIIVNLNVIE 36 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~e 36 (99)
-...|||++.+++.+.+
T Consensus 105 ~pV~pGd~l~~~~~v~~ 121 (154)
T 1z6b_A 105 KPVLPGDTLTMQANLIS 121 (154)
T ss_dssp SCCCTTCEEEEEEEEEE
T ss_pred cccCCCCEEEEEEEEEE
Confidence 35789999999998864
No 62
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.11 E-value=76 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=28.4
Q ss_pred CCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEec
Q psy3777 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN 54 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~ 54 (99)
..+|.-.+||+|.|.+.-.-.+ .|-+.+.++|+.-+.
T Consensus 51 ~r~~~A~iGD~IvvsVKk~~p~-~kg~V~kAVIVRtkk 87 (141)
T 3j21_J 51 RRLASAGVGDMVVATVKKGRPD-MRHQVVRAVIIRQRK 87 (141)
T ss_dssp TCCCCBCSSCEEEEEEEEECTT-TTTCEEEEEEEECSS
T ss_pred cccccCCcCCEEEEEEEecCCC-CcCceEEEEEEEeCC
Confidence 3467889999999999754332 367899999998664
No 63
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=35.11 E-value=26 Score=19.41 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=10.7
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 21 ELEVDDPLLVELQ 33 (62)
T ss_dssp CBCTTCEEEEEEE
T ss_pred cCCCCCEEEEEEe
Confidence 5999999999643
No 64
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=34.98 E-value=64 Score=22.60 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=32.4
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecC-CC-cceEEEEEeecCeeEEEEEee
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK-GL-NSNFIVRKISYNEGIERTFQL 78 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~-g~-~stftlR~i~~gvGVEr~fpl 78 (99)
.-+|+.|..|.+ +|.--++-.|+= .+-++ |- --.+.+||++.|--+|.+||-
T Consensus 33 a~dlrkG~~I~i-----dG~p~~Vve~~~---~KpGKHG~A~vr~k~knl~TG~k~E~tf~s 86 (167)
T 3er0_A 33 CSALRKNGFVVI-----KSRPCKIVDMST---SKTGKHGHAKVHLVAIDIFTGKKLEDLSPS 86 (167)
T ss_dssp TTTCCTTCEEEE-----TTEEEEEEEEEE---ECCSSSSCCEEEEEEEESSSCCCEEEEEES
T ss_pred HHHccCCCEEEE-----CCEEEEEEEEEE---eCCCCcCceEEEEEEEEcCCCCEEEEEEcC
Confidence 347999998876 343333333321 12233 32 235679999999999999964
No 65
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=34.88 E-value=43 Score=22.52 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=26.2
Q ss_pred CCcCCCCEEEEEEEE--ecCCceeeceEEEEEEEEec
Q psy3777 20 PDFVTGDTIIVNLNV--IEGTRKRIQAYEGIVISRRN 54 (99)
Q Consensus 20 p~f~~GD~v~V~~~i--~eg~k~r~q~f~GvvIa~r~ 54 (99)
..-.+||+|.|.+.- +++..++-|.+.++|+.-+.
T Consensus 31 r~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk 67 (122)
T 3v2d_O 31 KYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKK 67 (122)
T ss_dssp CCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSS
T ss_pred cccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC
Confidence 347899999999874 33444566899999998664
No 66
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=34.79 E-value=44 Score=23.83 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=32.9
Q ss_pred CCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCC-cceEEEEEeecCeeEEEEEee
Q psy3777 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGL-NSNFIVRKISYNEGIERTFQL 78 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~-~stftlR~i~~gvGVEr~fpl 78 (99)
...+|+.|.+|.+ +|.--++..|+ -.+-++|- --.+.+||+..|--+|.+|+-
T Consensus 6 ~a~dlk~G~~I~~-----dg~p~~Vve~~---~~KpGKG~A~vr~klknl~tG~~~e~tf~s 59 (191)
T 3oyy_A 6 TAQEFRAGQVANI-----NGAPWVIQKAE---FNKSGRNAAVVKMKLKNLLTGAGTETVFKA 59 (191)
T ss_dssp EGGGCCTTCEEEE-----TTEEEEEEEEE---EECCTTSCCEEEEEEEETTTCCEEEEEEET
T ss_pred cHHhCCCCCEEEE-----CCEEEEEEEEE---eeeCCCCcEEEEEEEEECCCCCEEEEEeCC
Confidence 3468999999876 24322222222 11224442 233569999999999999964
No 67
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=34.67 E-value=96 Score=21.79 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.5
Q ss_pred CcCCCCEEEEEEEEe
Q psy3777 21 DFVTGDTIIVNLNVI 35 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (99)
.+.|||.|.|++.-.
T Consensus 56 ~v~~GD~i~~tV~~~ 70 (173)
T 1y43_B 56 TISEGDSIKVTVEAT 70 (173)
T ss_dssp CCCTTCEEEEEEEEE
T ss_pred eeCCCCEEEEEEEEc
Confidence 488999999998754
No 68
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=34.10 E-value=61 Score=18.16 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 25 sf~~Gd~i~v~~~~ 38 (68)
T 1tg0_A 25 NFEKDQEIIVTSVE 38 (68)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997543
No 69
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=40.32 E-value=8.5 Score=24.29 Aligned_cols=56 Identities=14% Similarity=0.339 Sum_probs=37.0
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecC--CccceEEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS--PIISSIIVK 89 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~S--P~I~~I~V~ 89 (99)
.|++||.+.-.+. .| +-|.+.|.++...+ +++| .+.+ |-+.+.+... |+-++=++.
T Consensus 6 ~~kvGd~clAkws--Dg-----~wY~A~I~~v~~~~---~y~V--~F~D-Gn~E~V~~s~LrPl~~~~~~~ 63 (81)
T 2ldm_A 6 EFQINEQVLASWS--DS-----RFYPAKVTAVNKDG---TYTV--KFYD-GVVQTVKHIHVKAFSKDQNIV 63 (81)
Confidence 5999999999876 33 69999999987543 5666 3334 7666666553 444333333
No 70
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=34.04 E-value=44 Score=23.60 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=31.0
Q ss_pred CCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCC--CcceEEEEEeecCeeEEEEEeec
Q psy3777 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG--LNSNFIVRKISYNEGIERTFQLY 79 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g--~~stftlR~i~~gvGVEr~fpl~ 79 (99)
-+|+.|..|.+ +|.--++-.|+= .+-++| .--.+.+||++.|--+|.+||-.
T Consensus 34 ~dlrkG~~I~i-----dG~p~~Vve~~~---~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~ 87 (174)
T 1x6o_A 34 GALKKGGYVCI-----NGRPCKVIDLSV---SKTGKHGHAKVSIVATDIFTGNRLEDQAPST 87 (174)
T ss_dssp GGCCTTCEEEE-----TTEEEEEEEEEE---CCC----CCEEEEEEEETTTCCEEEEEEETT
T ss_pred HHccCCCEEEE-----CCEEEEEEEEEe---cCCCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence 47999988765 243333333321 122332 12357799999999999999643
No 71
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=33.90 E-value=40 Score=18.48 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=12.2
Q ss_pred CcCCCCEEEEEEEEe
Q psy3777 21 DFVTGDTIIVNLNVI 35 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (99)
.|+.||+|.|.-...
T Consensus 24 s~~~Gd~i~v~~~~~ 38 (60)
T 2gnc_A 24 SFKKGASLLLYHRAS 38 (60)
T ss_dssp CBCTTCEEEEEEEEE
T ss_pred CCCCCCEEEEEEecC
Confidence 699999999977643
No 72
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=33.40 E-value=29 Score=18.74 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 19 s~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 19 PLKKGDVIYITREE 32 (58)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997653
No 73
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=33.04 E-value=65 Score=22.63 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=17.5
Q ss_pred eeeceEEEEEEEEecCCCcceEEEE
Q psy3777 40 KRIQAYEGIVISRRNKGLNSNFIVR 64 (99)
Q Consensus 40 ~r~q~f~GvvIa~r~~g~~stftlR 64 (99)
=|-+.++|+|++-+ .+.|++|+
T Consensus 66 vRgr~l~G~VVS~K---MdKTIvV~ 87 (156)
T 3u5c_L 66 IRGKILTGTVVSTK---MHRTIVIR 87 (156)
T ss_dssp EEEEEEEEEEEECC---STTEEEEE
T ss_pred EeeEEEEEEEEeec---CCCeEEEE
Confidence 35578999999864 68899886
No 74
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=33.02 E-value=59 Score=20.23 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=12.8
Q ss_pred CcCCCCEEEEEEEEe
Q psy3777 21 DFVTGDTIIVNLNVI 35 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (99)
+.+|||+|.++..+.
T Consensus 72 Pv~~Gd~l~~~a~v~ 86 (121)
T 2f41_A 72 QVKQGERVVAKAKVT 86 (121)
T ss_dssp CCBTTCEEEEEEEEE
T ss_pred CcCCCCEEEEEEEEE
Confidence 568999999998886
No 75
>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44, structural Pro; 2.10A {Enterobacteria phage MU} SCOP: b.106.1.1 b.106.1.1
Probab=32.87 E-value=59 Score=24.57 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=26.1
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCC--cceEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGL--NSNFIV 63 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~--~stftl 63 (99)
.|.+|+.|.|.+ |.. ..|.|+|-.+...+- ..++++
T Consensus 47 ~~~~G~~l~v~i----G~~---~v~~G~Vd~v~~~~~~~~~~i~i 84 (379)
T 1wru_A 47 GLAPGKKFTLEI----GGQ---IVCTGYIDSRRRQMTADSMKITV 84 (379)
T ss_dssp GGCTTCEEEEEE----TTE---EEEEEEEEEEEEEECSSCEEEEE
T ss_pred ccCCCCEEEEEE----CCe---eEEEEEEEEEEeeEcCCceEEEE
Confidence 578999999987 432 589999999886543 335556
No 76
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=32.46 E-value=85 Score=19.03 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=28.8
Q ss_pred CCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEE
Q psy3777 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVR 64 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR 64 (99)
.....|.+||-|..++ ..| ..|.|.|.++... ..+.+|+
T Consensus 9 ~~~~~f~vGddVLA~w--tDG-----l~Y~gtI~~V~~~--~gtC~V~ 47 (66)
T 2eqj_A 9 KPACKFEEGQDVLARW--SDG-----LFYLGTIKKINIL--KQSCFII 47 (66)
T ss_dssp CCCCCSCTTCEEEEEC--TTS-----CEEEEEEEEEETT--TTEEEEE
T ss_pred cccccccCCCEEEEEE--ccC-----cEEEeEEEEEccC--CcEEEEE
Confidence 3445799999999988 346 4899999999863 2345553
No 77
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=32.26 E-value=33 Score=18.67 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 20 s~~~Gd~i~v~~~~ 33 (58)
T 1zx6_A 20 GLKPGDKVQLLEKL 33 (58)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEec
Confidence 59999999997543
No 78
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=32.20 E-value=61 Score=22.04 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=22.3
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecC
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~ 55 (99)
.|.+||.|+|. +|. ..-|+|++..+...
T Consensus 127 ~~~~Gd~V~V~----~GP---f~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 127 LFEPGEMVRVN----DGP---FADFNGVVEEVDYE 154 (181)
T ss_dssp CCCTTEEEEEC----SST---TTTEEEEEEEEETT
T ss_pred cCCCCCEEEEe----ccC---CCCcEEEEEEEeCC
Confidence 68999999885 453 56899999998753
No 79
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=32.20 E-value=30 Score=19.09 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 23 s~~~Gd~i~v~~~~ 36 (62)
T 1k4u_S 23 EFQEGDIILVLSKV 36 (62)
T ss_dssp CBCSSCEEEEEEES
T ss_pred cCCCCCEEEEEEeC
Confidence 59999999998653
No 80
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=32.18 E-value=26 Score=24.33 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=15.2
Q ss_pred CCCCCcCCCCEEEEEEEE
Q psy3777 17 KNIPDFVTGDTIIVNLNV 34 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~~~i 34 (99)
-+.|.+..||+|.|+|.-
T Consensus 22 G~~p~~~~G~~V~vhY~g 39 (165)
T 2lkn_A 22 GELPDFQDGTKATFHYRT 39 (165)
T ss_dssp SCCCCCCTTCEEEEECEE
T ss_pred CCCCCCCCCCEEEEEEEE
Confidence 456889999999999973
No 81
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=32.09 E-value=30 Score=20.06 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 24 s~~~Gd~i~v~~~~ 37 (65)
T 2lj0_A 24 ELRDGDIVDVMEKC 37 (65)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEeEeC
Confidence 69999999997543
No 82
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=32.01 E-value=48 Score=22.26 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCcCCCCEEEEEEEEe--cCCceeeceEEEEEEEEec
Q psy3777 20 PDFVTGDTIIVNLNVI--EGTRKRIQAYEGIVISRRN 54 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~--eg~k~r~q~f~GvvIa~r~ 54 (99)
+.-.+||+|.|.+.-. ++..++-+.+.++|+.-+.
T Consensus 31 ~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk 67 (122)
T 3r8s_K 31 RYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKK 67 (122)
T ss_dssp CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSS
T ss_pred CcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC
Confidence 3478999999998743 3333445899999998664
No 83
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=31.95 E-value=33 Score=18.84 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 22 s~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 22 NFKAGDVIFLLSRI 35 (60)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEeC
Confidence 59999999997654
No 84
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=31.92 E-value=71 Score=23.92 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=23.7
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEe
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQ 77 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fp 77 (99)
.++|||.+.+.+.+. -..+.++|+|+....-.+|+..|.
T Consensus 84 ~LRpGd~vsF~V~vr------------------y~~~~s~v~i~~~~~pe~l~v~~~ 122 (280)
T 2p26_A 84 YLRPGQAAAFNVTFR------------------RAKLSSRVFLDHNALPDTLKVTYD 122 (280)
T ss_dssp EECTTCCEEEEEEEC------------------CSSCCSSEEEEECCCCTTEEEEEE
T ss_pred EecCCCeEEEEEEEE------------------ecccccEEEEeecCCCCcEEEEEE
Confidence 478888888887774 233555666665443445554443
No 85
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=31.49 E-value=60 Score=19.92 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=13.0
Q ss_pred CcCCCCEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIE 36 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (99)
...|||+|.++..+.+
T Consensus 87 Pv~~Gd~l~~~~~v~~ 102 (134)
T 1iq6_A 87 PVFVGDEVTAEVEVTA 102 (134)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEE
Confidence 4689999999988754
No 86
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=30.80 E-value=25 Score=19.94 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 26 s~~~Gd~i~v~~~~ 39 (67)
T 2eyx_A 26 ALEVGELVKVTKIN 39 (67)
T ss_dssp CBCSSEEEEEEEEC
T ss_pred ccCCCCEEEEEEec
Confidence 59999999997653
No 87
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=30.74 E-value=34 Score=18.68 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.1
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 22 s~~~Gd~i~v~~~ 34 (59)
T 2g6f_X 22 SFSKGDVIHVTRV 34 (59)
T ss_dssp CBCTTCEEEEEEE
T ss_pred CCCCCCEEEEEEe
Confidence 5999999998754
No 88
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=30.69 E-value=1.4e+02 Score=20.87 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecC-C-CcceEEEEEeecCeeEEEEEee
Q psy3777 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK-G-LNSNFIVRKISYNEGIERTFQL 78 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~-g-~~stftlR~i~~gvGVEr~fpl 78 (99)
-+|+.|..|.+ +|.--++-.|+ -.+-++ | .--.+.+||++.|--+|.+||-
T Consensus 32 ~dlrkG~~I~i-----dG~P~~Vve~~---~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s 84 (167)
T 3hks_A 32 GNIRKGGHIVI-----KNRPCKVVEVS---TSKTGKHGHAKCHFVAIDIFTAKKLEDIVPS 84 (167)
T ss_dssp GGCCTTSEEEE-----TTEEEEEEEEE---EECSSTTCCCEEEEEEEETTTCCEEEEEEET
T ss_pred HHccCCCEEEE-----CCEEEEEEEEE---EeCCCCCCceEEEEEEEEcCCCCEEEEEEcC
Confidence 36999998876 34333333332 123345 3 1235679999999999999974
No 89
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=29.71 E-value=49 Score=23.55 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=33.9
Q ss_pred CCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCC-CcceEEEEEeecCeeEEEEEeec
Q psy3777 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG-LNSNFIVRKISYNEGIERTFQLY 79 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g-~~stftlR~i~~gvGVEr~fpl~ 79 (99)
...+|+.|.+|.+ +|.--++..|+- .+-++| .--.+.+||+..|--+|.+|+--
T Consensus 8 ~a~dlkkG~~I~~-----dG~p~~Vve~~~---~KpGKG~A~vr~klknl~tG~~~e~tf~s~ 62 (191)
T 3tre_A 8 STNEFRGGLKVMV-----DGDPCSIIDNEF---VKPGKGQAFNRVKFRNLKTGRVLERTFKSG 62 (191)
T ss_dssp EGGGCCTTCEEEE-----TTEEEEEEEEEE---ECCSSSCCEEEEEEEETTTCCEEEEEEETT
T ss_pred EHHHCCCCCEEEE-----CCEEEEEEEEEE---eeCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence 4568999999875 243233333322 122333 22345699999999999999754
No 90
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=29.64 E-value=25 Score=21.59 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=20.7
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN 54 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~ 54 (99)
.|++||-|+|-- | |-+--.|+|+++.+
T Consensus 17 ~F~~GDHVkVi~----G---~~~getGlVV~v~~ 43 (69)
T 2do3_A 17 YFKMGDHVKVIA----G---RFEGDTGLIVRVEE 43 (69)
T ss_dssp SCCTTCEEEESS----S---TTTTCEEEEEEECS
T ss_pred eccCCCeEEEec----c---EEcCceEEEEEEeC
Confidence 599999999842 4 34566799999984
No 91
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=29.41 E-value=38 Score=19.08 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 21 sf~~Gd~i~v~~~~ 34 (67)
T 2bzy_A 21 ALEVGDIVKVTRMN 34 (67)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred ccCCCCEEEEEEec
Confidence 69999999997653
No 92
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=29.06 E-value=36 Score=19.35 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=10.7
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (71)
T 2fpf_A 24 ELEVDDPLLVELQ 36 (71)
T ss_dssp CBCTTCEEEEEEE
T ss_pred cCcCCcEEEEeEe
Confidence 5999999999643
No 93
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=29.06 E-value=31 Score=24.38 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=23.8
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCC
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG 56 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g 56 (99)
.+.||+.+.|++.-.. .+.|.|..|.-+..+
T Consensus 49 ~y~pG~~~~VtL~g~~-----~~~F~GFlLqAr~~~ 79 (180)
T 3coo_A 49 FYKPGTSYRVTLSAAP-----PSYFRGFTLIALREN 79 (180)
T ss_dssp EECTTCEEEEEEEECT-----TCCBSCCEEEEEETT
T ss_pred eecCCCcEEEEEeccC-----CCceeEEEEEEEcCC
Confidence 4889999999987322 267999999887643
No 94
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=28.93 E-value=32 Score=18.41 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=11.4
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 18 s~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 18 SIDPGDIITVIRGD 31 (54)
T ss_dssp CBCTTCEEEEEECC
T ss_pred cCCCCCEEEEEEec
Confidence 69999999997543
No 95
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=28.76 E-value=44 Score=26.62 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.3
Q ss_pred cCCCCCcCCCCEEEEEEEEec
Q psy3777 16 KKNIPDFVTGDTIIVNLNVIE 36 (99)
Q Consensus 16 ~~~~p~f~~GD~v~V~~~i~e 36 (99)
.-.+|.+++||+|...|.+..
T Consensus 100 ~~~~p~v~~G~iIey~Y~i~~ 120 (506)
T 3kd4_A 100 VVVHTGLELGATIYLDYSIIT 120 (506)
T ss_dssp EEECCSCCTTCEEEEEEEEEE
T ss_pred EEEcCCCCCCcEEEEEEEEEe
Confidence 357899999999999999863
No 96
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=28.58 E-value=55 Score=17.84 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=12.0
Q ss_pred CCcCCCCEEEEEEEE
Q psy3777 20 PDFVTGDTIIVNLNV 34 (99)
Q Consensus 20 p~f~~GD~v~V~~~i 34 (99)
-.|+.||+|.|.-..
T Consensus 24 Ls~~~Gd~i~v~~~~ 38 (65)
T 3u23_A 24 LELKVGDIIDINEEV 38 (65)
T ss_dssp CCBCTTCEEEEEEEE
T ss_pred cCCCCCCEEEEEEec
Confidence 369999999987654
No 97
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.57 E-value=1e+02 Score=18.63 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEE
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIE 73 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVE 73 (99)
...+++||.+.-.+. .| +-|.+.|.++... .+++|+= ..+ -.|
T Consensus 7 ~~~~kvGd~clA~ws--Dg-----~~Y~A~I~~v~~~---~~~~V~f-~Dy-n~e 49 (74)
T 2equ_A 7 GFDFKAGEEVLARWT--DC-----RYYPAKIEAINKE---GTFTVQF-YDG-VIR 49 (74)
T ss_dssp CCCCCTTCEEEEECS--SS-----SEEEEEEEEESTT---SSEEEEE-TTS-CEE
T ss_pred CCCCCCCCEEEEECC--CC-----CEEEEEEEEECCC---CEEEEEE-ecC-CeE
Confidence 346999999999875 34 6999999999764 3577743 344 444
No 98
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=28.53 E-value=35 Score=20.98 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=12.1
Q ss_pred CCCcCCCCEEEEEE
Q psy3777 19 IPDFVTGDTIIVNL 32 (99)
Q Consensus 19 ~p~f~~GD~v~V~~ 32 (99)
+|+..+||.|-||.
T Consensus 33 v~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 33 MPDTKPGDWVIVHT 46 (75)
T ss_dssp STTCCTTCEEEEET
T ss_pred eCCCCCCCEEEEec
Confidence 57889999999985
No 99
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=28.29 E-value=44 Score=19.37 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=11.4
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 23 s~~~Gd~i~v~~~~ 36 (73)
T 2lcs_A 23 RLAEGDIVFISYKH 36 (73)
T ss_dssp CBCTTCEEEEEEEE
T ss_pred CCcCCCEEEEEEEc
Confidence 59999999996543
No 100
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=28.20 E-value=31 Score=18.76 Aligned_cols=13 Identities=38% Similarity=0.325 Sum_probs=10.9
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 18 s~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 18 TFVENDKIINIEF 30 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred ccCCCCEEEEEEe
Confidence 6999999999654
No 101
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=28.18 E-value=39 Score=18.85 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (65)
T 2j05_A 24 SFLKGDMFIVHNE 36 (65)
T ss_dssp CBCTTCEEEEEEE
T ss_pred cCCCCCEEEEeEe
Confidence 5999999999754
No 102
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=27.92 E-value=50 Score=21.53 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=13.1
Q ss_pred CcCCCCEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIE 36 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (99)
.|++||.|.|.+.-..
T Consensus 51 ~~~vGd~V~vkV~~vd 66 (130)
T 2k4k_A 51 HLSVGDEVQVKVLAVD 66 (130)
T ss_dssp TCCTTCEEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEe
Confidence 4999999999987543
No 103
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=27.87 E-value=34 Score=18.46 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (57)
T 1cka_A 19 PFKKGDILRIRDK 31 (57)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 5999999999653
No 104
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=27.76 E-value=79 Score=20.43 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.4
Q ss_pred CcCCCCEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIE 36 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (99)
...|||+|.++..+.+
T Consensus 106 PV~~Gd~l~~~~~v~~ 121 (161)
T 1q6w_A 106 PVFIGDTIAASAEVVE 121 (161)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEE
Confidence 4789999999998864
No 105
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=27.74 E-value=34 Score=19.34 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 28 sf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 28 RLNPGDIVELTKA 40 (70)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CcCCCCEEEEEeC
Confidence 5999999999754
No 106
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=27.73 E-value=81 Score=20.42 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=18.3
Q ss_pred CcCCCCEEEEEEEEec-----CCceeeceEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNVIE-----GTRKRIQAYEGIVIS 51 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e-----g~k~r~q~f~GvvIa 51 (99)
.++.||.|-|.+...+ ++. .-..|.|..|.
T Consensus 97 ~L~~GD~V~l~~~~~~~~~~~~~~-~~stFsGfLl~ 131 (134)
T 2wnv_A 97 QLQQGDQVWVEKDPKKGHIYQGSE-ADSVFSGFLIF 131 (134)
T ss_dssp EECTTCEEEEEEEEEEECCCCSSS-SCCEEEEEEEE
T ss_pred EECCCCEEEEEEeCCCceEEcCCC-CCEEEEEEEee
Confidence 5788999988875321 111 44566666653
No 107
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=27.69 E-value=30 Score=19.44 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=10.2
Q ss_pred CCcCCCCEEEEE
Q psy3777 20 PDFVTGDTIIVN 31 (99)
Q Consensus 20 p~f~~GD~v~V~ 31 (99)
-.|+.||+|.|.
T Consensus 25 Lsf~~Gd~i~v~ 36 (67)
T 3rnj_A 25 LSFKEGDLITLL 36 (67)
T ss_dssp CCBCTTCEEEEC
T ss_pred ccCCCCCEEEEe
Confidence 369999999985
No 108
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.69 E-value=1.2e+02 Score=19.15 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=38.1
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeec
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLY 79 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~ 79 (99)
..++||.+.+.+. +++ |-|.|-|+++...+. +.| .+...|.+-++|..
T Consensus 21 ~~k~g~~vaak~~--d~n----~WyRakV~~v~~~~~---veV--l~~DyGn~~~V~~~ 68 (85)
T 2eqk_A 21 KWENDMHCAVKIQ--DKN----QWRRGQIIRMVTDTL---VEV--LLYDVGVELVVNVD 68 (85)
T ss_dssp CCCSSCEEEEECS--SSC----CEEEEEEEEECSSSE---EEE--ECTTTCCEEEEETT
T ss_pred CccCCCEEEEEeC--CCC----eEEEEEEEEecCCCe---EEE--EEEccCCEEEEEcc
Confidence 6899999999875 343 899999999987553 666 67889999888844
No 109
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=27.66 E-value=41 Score=18.38 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 23 s~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 23 SFNANDIIDIIKED 36 (60)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997653
No 110
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=27.65 E-value=75 Score=20.53 Aligned_cols=31 Identities=10% Similarity=0.243 Sum_probs=18.9
Q ss_pred CcCCCCEEEEEEEEecC---CceeeceEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNVIEG---TRKRIQAYEGIVIS 51 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg---~k~r~q~f~GvvIa 51 (99)
.++.||.|-|.+.-..+ +...-..|.|..|.
T Consensus 96 ~L~~GD~V~v~~~~~~~~~~~~~~~stFsGfLl~ 129 (131)
T 2wnv_C 96 RLQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLF 129 (131)
T ss_dssp EECTTCEEEEEEEEEECCCCCTTCCCEEEEEEEE
T ss_pred EECCCCEEEEEEeCCceEecCCCCCEEEEEEEEe
Confidence 57889999998753221 12244567776653
No 111
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=27.57 E-value=65 Score=22.64 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=16.4
Q ss_pred ceeeceEEEEEEEEecCCCcceEEEE
Q psy3777 39 RKRIQAYEGIVISRRNKGLNSNFIVR 64 (99)
Q Consensus 39 k~r~q~f~GvvIa~r~~g~~stftlR 64 (99)
.-|-+.++|+|++-+ .+.|++|+
T Consensus 67 svRGr~l~G~VVS~K---MdKTIvV~ 89 (158)
T 2zkq_q 67 SIRGRILSGVVTKMK---MQRTIVIR 89 (158)
T ss_dssp ----CEEEEEEEECS---SSCEEEEE
T ss_pred ceeeEEEEEEEEEcc---CCccEEEE
Confidence 345689999999954 68999987
No 112
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=27.55 E-value=43 Score=18.73 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=11.1
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (67)
T 2o9s_A 24 SFRKGERITLLRQ 36 (67)
T ss_dssp CBCTTCEEEEEEE
T ss_pred CCCCCCEEEEEEe
Confidence 5999999999764
No 113
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=27.52 E-value=58 Score=18.21 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 25 s~~~Gd~i~v~~~~ 38 (70)
T 2cuc_A 25 DLQKGEGIRVLGKY 38 (70)
T ss_dssp CBCTTCEEEEEEEE
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997654
No 114
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=27.45 E-value=1.1e+02 Score=18.67 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=16.1
Q ss_pred CCCCCcCCCCEEEEEEEEec
Q psy3777 17 KNIPDFVTGDTIIVNLNVIE 36 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~~~i~e 36 (99)
..+..+++||.|+..+...+
T Consensus 43 ~~l~~lk~Gd~V~F~~~~~~ 62 (82)
T 2l55_A 43 GLPQGLKAGDRVAFSFRLDP 62 (82)
T ss_dssp CCCSSCSTTCEEEEEEEEET
T ss_pred hHhhcCCCCCEEEEEEEECC
Confidence 35678999999999987654
No 115
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=27.32 E-value=28 Score=24.55 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=10.6
Q ss_pred CCcCCCCEEEEE
Q psy3777 20 PDFVTGDTIIVN 31 (99)
Q Consensus 20 p~f~~GD~v~V~ 31 (99)
-+++.||+|+|.
T Consensus 62 LeLRiGD~VKVd 73 (153)
T 2fhd_A 62 FFLKKGDVVQST 73 (153)
T ss_dssp SCCCTTCEEEET
T ss_pred eeeecCCEEEEC
Confidence 379999999997
No 116
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=27.30 E-value=31 Score=18.79 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (58)
T 2bz8_A 19 TISVGEIITNIRK 31 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred eECCCCEEEEEEe
Confidence 6999999999754
No 117
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=27.29 E-value=77 Score=20.66 Aligned_cols=31 Identities=10% Similarity=0.305 Sum_probs=19.1
Q ss_pred CcCCCCEEEEEEEEec---CCceeeceEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNVIE---GTRKRIQAYEGIVIS 51 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e---g~k~r~q~f~GvvIa 51 (99)
.++.||.|-|.+.-.. ++...-..|.|..|.
T Consensus 98 ~L~~GD~V~v~~~~~~~~~~~~~~~stFsGfLl~ 131 (136)
T 2wnv_B 98 KLEQGENVFLQATDKNSLLGMEGANSIFSGFLLF 131 (136)
T ss_dssp EECTTCEEEEEEEEEECCBCBTTBCCEEEEEEEE
T ss_pred EECCCCEEEEEEeCCceEEcCCCCCEEEEEEEec
Confidence 5788999999875321 112245567776654
No 118
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=27.22 E-value=36 Score=18.39 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 20 s~~~Gd~i~v~~~ 32 (58)
T 1sem_A 20 AFKRGDVITLINK 32 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 6999999999754
No 119
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=26.94 E-value=34 Score=18.54 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (58)
T 1uti_A 19 GFRSGEVVEVLDS 31 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEE
Confidence 6999999999754
No 120
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=26.87 E-value=44 Score=17.90 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=11.9
Q ss_pred CCcCCCCEEEEEEEE
Q psy3777 20 PDFVTGDTIIVNLNV 34 (99)
Q Consensus 20 p~f~~GD~v~V~~~i 34 (99)
-.|+.||+|.|.-..
T Consensus 18 Ls~~~Gd~i~v~~~~ 32 (58)
T 4e6r_A 18 LSLVXGSRVTVMEXC 32 (58)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred eeEeCCCEEEEeEcC
Confidence 369999999997543
No 121
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=26.77 E-value=34 Score=18.98 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.4
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 39 sf~~Gd~i~v~~~~ 52 (62)
T 1g2b_A 39 TMKKGDILTLLNST 52 (62)
T ss_dssp CBCTTCEEEEEECC
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997643
No 122
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=26.71 E-value=84 Score=20.95 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=12.8
Q ss_pred CcCCCCEEEEEEEEe
Q psy3777 21 DFVTGDTIIVNLNVI 35 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (99)
+.+|||+|.++..+.
T Consensus 108 PV~~GD~L~a~a~v~ 122 (157)
T 2f3x_A 108 QVKQGERVVAKAKVT 122 (157)
T ss_dssp CCBTTCEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEE
Confidence 568999999998886
No 123
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=26.61 E-value=60 Score=23.73 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=9.3
Q ss_pred CcCCCCEEEE
Q psy3777 21 DFVTGDTIIV 30 (99)
Q Consensus 21 ~f~~GD~v~V 30 (99)
+|++||.|++
T Consensus 128 pf~vGD~I~i 137 (285)
T 3udc_A 128 QFSVGDYVTI 137 (285)
T ss_dssp SCCTTCEEEE
T ss_pred CccCCCEEEE
Confidence 6999999998
No 124
>2b3n_A Hypothetical protein AF1124; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A 3k67_A
Probab=26.58 E-value=72 Score=21.25 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHhh------cCCCCCcCCCCEEEEEEEEe
Q psy3777 1 MNLIQKIEQEEIIRL------KKNIPDFVTGDTIIVNLNVI 35 (99)
Q Consensus 1 m~li~~~e~~~~~~~------~~~~p~f~~GD~v~V~~~i~ 35 (99)
|.++++++.-.-++- ..-+.+|.+||.......+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~edl~vG~~~~~~~~vt 49 (159)
T 2b3n_A 9 MSLLEEMKGIYSKKGGKVKPFEKFEGELKEGYRFEYEKKLC 49 (159)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCCCCSCCCTTCEEEEEEECC
T ss_pred HHHHHHhhhccccCCCCCCcCccccccCCCCCEEEeeeeeC
Confidence 456666665443332 23467899999998766654
No 125
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe, spine, structural genomics; 1.8A {Mycobacterium tuberculosis} SCOP: d.38.1.4
Probab=26.44 E-value=48 Score=21.14 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=13.7
Q ss_pred CcCCCCEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIE 36 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (99)
+..|||+|.++..+.+
T Consensus 99 PV~~Gd~l~~~~~v~~ 114 (151)
T 2c2i_A 99 PVPVGSRVRATSSLVG 114 (151)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred CcCCCCEEEEEEEEEE
Confidence 5789999999998864
No 126
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=26.41 E-value=1.3e+02 Score=21.67 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEe
Q psy3777 17 KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRR 53 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r 53 (99)
-|-....+||++.-++++++ ++.|.|+=+-++
T Consensus 25 lDKt~a~VGdII~ATIkinn-----I~nfAGYQvNIK 56 (187)
T 3kcp_B 25 FDRNKGEVGDILIGTVRINN-----IKNFAGFQVNIV 56 (187)
T ss_dssp ESCSCCCTTCEEEEEEEEES-----CTTEEEEEEEEE
T ss_pred EcccceeeccEEEEEEEEcc-----cccccceEEeee
Confidence 45556899999999999964 679999988776
No 127
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=26.34 E-value=1.1e+02 Score=21.53 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=32.4
Q ss_pred CCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCC-cceEEEEEeecCeeEEEEEee
Q psy3777 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGL-NSNFIVRKISYNEGIERTFQL 78 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~-~stftlR~i~~gvGVEr~fpl 78 (99)
-+|+.|..|.+ +|.--++-.|+ -.+-++|- --.+.+||+..|--+|.+|+-
T Consensus 5 ~dlkkG~~i~~-----dg~p~~Vve~~---~~KpGKG~A~vr~klknl~TG~~~e~tf~s 56 (184)
T 1ueb_A 5 TDLRPGTKVKM-----DGGLWECVEYQ---HQKLGRGGAKVVAKFKNLETGATVERTFNS 56 (184)
T ss_dssp GGCCTTCEEEE-----TTEEEEEEEEE---EEEETTSCCEEEEEEEESSSSCEEEEEEET
T ss_pred hhcCCCCEEEE-----CCEEEEEEEEE---EeeCCCCceEEEEEEEECCCCCEEEEEECC
Confidence 36899988765 24333333333 22334442 234569999999999999974
No 128
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=26.32 E-value=1.1e+02 Score=18.18 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=27.7
Q ss_pred CCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEE
Q psy3777 20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVR 64 (99)
Q Consensus 20 p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR 64 (99)
|.|.+|+-|-++.. .| ..|=|.|+++...+ .+.+||
T Consensus 2 ~~f~~GedVLarws--DG-----~fYlGtI~~V~~~~--~~clV~ 37 (58)
T 4hcz_A 2 PRLWEGQDVLARWT--DG-----LLYLGTIKKVDSAR--EVCLVQ 37 (58)
T ss_dssp CSCCTTCEEEEECT--TS-----CEEEEEEEEEETTT--TEEEEE
T ss_pred CccccCCEEEEEec--CC-----CEEeEEEEEEecCC--CEEEEE
Confidence 78999999998864 35 58999999987654 456664
No 129
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=26.20 E-value=32 Score=22.09 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=11.9
Q ss_pred CCCCCcCCCCEEEEE
Q psy3777 17 KNIPDFVTGDTIIVN 31 (99)
Q Consensus 17 ~~~p~f~~GD~v~V~ 31 (99)
..-|+.+|||.|.+.
T Consensus 3 ~~~~ep~pGDlI~~~ 17 (125)
T 2lkt_A 3 SPHQEPKPGDLIEIF 17 (125)
T ss_dssp SSSCCCCTTCEEEEE
T ss_pred CCCCCCCCCCEEEEe
Confidence 456789999999873
No 130
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.15 E-value=62 Score=18.38 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=12.2
Q ss_pred CcCCCCEEEEEEEEe
Q psy3777 21 DFVTGDTIIVNLNVI 35 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (99)
.|+.||+|.|.-...
T Consensus 27 s~~~Gd~i~v~~~~~ 41 (72)
T 2dl8_A 27 SFKKGASLLLYQRAS 41 (72)
T ss_dssp CBCTTCEEEEEEEEE
T ss_pred ccCCCCEEEEEeecC
Confidence 699999999976643
No 131
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=26.09 E-value=85 Score=23.99 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=22.2
Q ss_pred cCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCC
Q psy3777 22 FVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGL 57 (99)
Q Consensus 22 f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~ 57 (99)
-.|||+++|++..-+- ..+ |+.-...+.|.
T Consensus 71 AePGD~L~V~I~~i~~-----~~~-G~~~~~pg~G~ 100 (301)
T 3mjj_A 71 AKEGDVLKVKIKKIEV-----AEK-GVLATGKGLGV 100 (301)
T ss_dssp CCTTCEEEEEEEEEEE-----CSE-EEEEEETTCST
T ss_pred CCCCCEEEEEEEEEEe-----cCc-EEEEeCCCccc
Confidence 4699999999987643 233 88877777765
No 132
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=26.04 E-value=51 Score=21.57 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.4
Q ss_pred CcCCCCEEEEEEEEec
Q psy3777 21 DFVTGDTIIVNLNVIE 36 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~e 36 (99)
.+.|||+|.++..+.+
T Consensus 91 PV~~GD~L~~~~~v~~ 106 (154)
T 3exz_A 91 PTRPGDELHVETTVLA 106 (154)
T ss_dssp CCCTTCEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEE
Confidence 4789999999998863
No 133
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=26.02 E-value=39 Score=18.33 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=10.4
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 20 s~~~Gd~i~v~~ 31 (60)
T 2v1q_A 20 TIKSGDKVYILD 31 (60)
T ss_dssp CBCTTCEEEEEE
T ss_pred cCCCCCEEEEEe
Confidence 599999999965
No 134
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=25.86 E-value=34 Score=18.61 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=10.1
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 21 s~~~Gd~i~v~~ 32 (60)
T 2x3w_D 21 SFKAGDELTKLG 32 (60)
T ss_dssp CBCTTCEEEECS
T ss_pred cCCCCCEEEEEE
Confidence 599999999853
No 135
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=25.84 E-value=39 Score=18.33 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 21 YFEEGDIIYITDM 33 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred cCCCCCEEEEEEe
Confidence 5999999999754
No 136
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=25.73 E-value=37 Score=18.66 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=11.1
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (61)
T 1y0m_A 21 TFTKSAIIQNVEK 33 (61)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCcCCCEEEEEEe
Confidence 6999999999764
No 137
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=25.69 E-value=37 Score=21.33 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=10.4
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.+++||+|+++-.
T Consensus 56 g~k~GdVvkI~R~ 68 (84)
T 4ayb_H 56 NAKPGDIIRIIRK 68 (84)
T ss_dssp TCCTTCEEEEEEE
T ss_pred CCCCCCEEEEEEc
Confidence 3689999999764
No 138
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=25.41 E-value=1.6e+02 Score=20.81 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=30.7
Q ss_pred CCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCC
Q psy3777 18 NIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKG 56 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g 56 (99)
...++.+|+.|.|.|.+.+ .|+|-==|..-+..++..-
T Consensus 89 ~w~~L~vGqvVMvNYN~d~-PkerGfWYDaeI~~~~~~r 126 (161)
T 3db3_A 89 KWQDLEVGQVVMLNYNPDN-PKERGFWYDAEISRKRETR 126 (161)
T ss_dssp CGGGCCTTCEEEEEECSSS-TTSCCEEEEEEEEEEEECS
T ss_pred cHHHCCcCcEEEEecCCCC-ccccceeEEEEEeeehhhh
Confidence 3457999999999998865 4899889999888876533
No 139
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=25.33 E-value=53 Score=23.38 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=12.7
Q ss_pred cCCCCEEEEEEEEec
Q psy3777 22 FVTGDTIIVNLNVIE 36 (99)
Q Consensus 22 f~~GD~v~V~~~i~e 36 (99)
|++||+|++.+...+
T Consensus 136 l~~GD~V~akVisi~ 150 (209)
T 2nn6_I 136 FRPGDIVLAKVISLG 150 (209)
T ss_dssp CCSSSEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEe
Confidence 999999999886553
No 140
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=25.16 E-value=67 Score=21.35 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.8
Q ss_pred CCCcCCCCEEEEEEEEec
Q psy3777 19 IPDFVTGDTIIVNLNVIE 36 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~e 36 (99)
.-.+.|||++.+++.+.+
T Consensus 75 ~~~V~PGD~l~l~v~~~~ 92 (129)
T 3esi_A 75 QQPILPGKTLRLVLIWHA 92 (129)
T ss_dssp CSCCCTTCEEEEEEEEET
T ss_pred CcccCCCCEEEEEEEEEe
Confidence 345799999999998864
No 141
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=25.09 E-value=36 Score=19.10 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.1
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 25 s~~~Gd~i~v~~ 36 (67)
T 2kxc_A 25 SFAQGDVITLLI 36 (67)
T ss_dssp CBCTTCEEEESS
T ss_pred cCCCCCEEEEeE
Confidence 599999999953
No 142
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=25.03 E-value=41 Score=18.57 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.9
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 23 s~~~Gd~i~v~~~ 35 (62)
T 1uj0_A 23 TFKHGELITVLDD 35 (62)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 5999999999753
No 143
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=24.94 E-value=42 Score=18.10 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (58)
T 2drm_A 21 TFKEGDTIIVHQK 33 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 6999999998654
No 144
>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI protein structure initiative, northeast structural genomics consortium, NESG; HET: C2E; 1.92A {Vibrio cholerae} SCOP: b.45.2.1 b.45.2.2 PDB: 1yln_A* 3kyg_A*
Probab=24.89 E-value=1.7e+02 Score=20.38 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=25.4
Q ss_pred CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecC
Q psy3777 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNK 55 (99)
Q Consensus 19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~ 55 (99)
-+.+.+||.+.+.+....+.......+.|.|...+..
T Consensus 175 ~~~~~~g~~v~l~~~l~~~~~~~~~~~~~~V~~~~~~ 211 (251)
T 2rde_A 175 GKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRS 211 (251)
T ss_dssp SCCCCTTCEEEEEEBSSTTSSCBCSCEEEEEEEEEEC
T ss_pred CCCcCCCCEEEEEEEcCCCCcccceeEEEEEEEeEec
Confidence 3579999999998876422112234799999887643
No 145
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=24.81 E-value=37 Score=18.53 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (60)
T 1oot_A 21 PFRKGDVITILKK 33 (60)
T ss_dssp CBCTTCEEEEEEC
T ss_pred eEcCCCEEEEEEe
Confidence 5999999999754
No 146
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=24.80 E-value=48 Score=18.94 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 21 sf~~Gd~i~v~~~~ 34 (68)
T 2ew3_A 21 GFKEGDIITLTNQI 34 (68)
T ss_dssp CBCTTCEEEEEEES
T ss_pred CCCCCCEEEEEEec
Confidence 69999999997654
No 147
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=24.79 E-value=41 Score=18.56 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.9
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (64)
T 2jte_A 24 TFREGEIIHLISK 36 (64)
T ss_dssp CBCTTCEEEEEES
T ss_pred CCCCCCEEEEEEC
Confidence 6999999999653
No 148
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=24.53 E-value=42 Score=18.53 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (64)
T 2ak5_A 24 SFSKGDVIHVTRV 36 (64)
T ss_dssp CBCTTCEEEEEEC
T ss_pred cCCCCCEEEEeEe
Confidence 5999999998753
No 149
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=24.48 E-value=52 Score=18.80 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 31 s~~~Gd~i~v~~~~ 44 (73)
T 3c0c_A 31 GFREGDLITLTNQI 44 (73)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCcCCCEEEEEEec
Confidence 59999999997654
No 150
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=24.47 E-value=41 Score=19.48 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=11.1
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 36 sf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 36 RLNPGDIVELTKA 48 (78)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 5999999999764
No 151
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=24.22 E-value=38 Score=18.51 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=10.1
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 19 s~~~Gd~i~v~~ 30 (60)
T 1i07_A 19 SVMKDDVLEILD 30 (60)
T ss_dssp CBCTTCEEEECG
T ss_pred cCCCCCEEEEEE
Confidence 599999999853
No 152
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=24.20 E-value=51 Score=18.16 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=11.2
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 19 TIRVGEIIRNVKK 31 (62)
T ss_dssp CBCTTCEEEEEEE
T ss_pred CCcCCCEEEEEEe
Confidence 6999999999765
No 153
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=24.10 E-value=53 Score=19.01 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 25 s~~~Gd~i~v~~~~ 38 (80)
T 1ue9_A 25 SLAPGQLILILKKN 38 (80)
T ss_dssp CCCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997653
No 154
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=24.01 E-value=56 Score=17.77 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=11.1
Q ss_pred CCcCCCCEEEEEEE
Q psy3777 20 PDFVTGDTIIVNLN 33 (99)
Q Consensus 20 p~f~~GD~v~V~~~ 33 (99)
-.|+.||+|.|.-.
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (64)
T 4f14_A 23 VSFRDGDYIVNVQP 36 (64)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CCCCCCCEEEEEEe
Confidence 36999999988654
No 155
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagel unknown function; HET: MSE; 2.60A {Campylobacter jejuni}
Probab=23.92 E-value=1e+02 Score=20.29 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=17.4
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEE
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEG 47 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~G 47 (99)
+.+|||+|.++..+......+...+++
T Consensus 99 PV~~GD~L~a~a~v~~~~~~~~~~v~~ 125 (152)
T 3bnv_A 99 PLKLGDVLELEAHALFDETSKKRDVKV 125 (152)
T ss_dssp CCBTTCEEEEEEEECCCSSCSEEEEEE
T ss_pred CCCCCCEEEEEEEEEEEcCCcEEEEEE
Confidence 568999999999886432033444444
No 156
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=23.92 E-value=40 Score=19.52 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 29 s~~~Gd~i~v~~~~ 42 (73)
T 2ebp_A 29 KLKKGDIIDIISKP 42 (73)
T ss_dssp CBCSSCEEEEEECC
T ss_pred CCCCCCEEEEEEeC
Confidence 59999999997653
No 157
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=23.92 E-value=72 Score=18.59 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 35 sf~~Gd~i~Vl~~~ 48 (72)
T 2l0a_A 35 TFKAGEIITVLDDS 48 (72)
T ss_dssp CBCTTCEEEEEEEE
T ss_pred CCCCCCEEEEEEec
Confidence 59999999997654
No 158
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=23.91 E-value=52 Score=18.49 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=11.4
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 21 s~~~Gd~i~v~~~~ 34 (69)
T 1ruw_A 21 PLKKGDIVFISRDE 34 (69)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEec
Confidence 59999999997543
No 159
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=23.80 E-value=44 Score=18.44 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.4
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 25 s~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 25 SFKKGEKMKVLEEH 38 (65)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEcC
Confidence 59999999997543
No 160
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=23.75 E-value=43 Score=18.07 Aligned_cols=13 Identities=46% Similarity=0.432 Sum_probs=10.9
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 20 s~~~Gd~i~v~~~ 32 (58)
T 2vwf_A 20 GFRRGDFIHVMDN 32 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 5999999999754
No 161
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=23.46 E-value=46 Score=18.30 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (62)
T 2iim_A 24 GFEKGEQLRILEQ 36 (62)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 5999999999653
No 162
>2ifr_A Scytalidopepsin B; enzyme-transition state analog complex, hydrolase-hydrolase complex; HET: TA2; 1.95A {Scytalidium lignicola} SCOP: b.29.1.20 PDB: 1s2b_A* 1s2k_A* 2ifw_A*
Probab=23.38 E-value=1.9e+02 Score=20.83 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=12.4
Q ss_pred CcCCCCEEEEEEEEe
Q psy3777 21 DFVTGDTIIVNLNVI 35 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (99)
.+.|||.|.|++.-.
T Consensus 82 ~vs~GD~i~~tV~~~ 96 (206)
T 2ifr_A 82 TISEGDSIQMSVTAT 96 (206)
T ss_dssp CCCTTCEEEEEEEEE
T ss_pred eeCCCCEEEEEEEEc
Confidence 488999999998754
No 163
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.20 E-value=45 Score=19.29 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.2
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 32 sf~~Gd~i~v~~ 43 (75)
T 2ege_A 32 ALRAGDVVMVYG 43 (75)
T ss_dssp CBCTTCEEEEES
T ss_pred eECCCCEEEEeE
Confidence 599999999963
No 164
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=23.17 E-value=33 Score=18.53 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=11.3
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 19 s~~~Gd~i~v~~~~ 32 (58)
T 1zuu_A 19 TITPGDKISLVARD 32 (58)
T ss_dssp CBCTTCCEEEEECC
T ss_pred cCCCCCEEEEeEcC
Confidence 59999999997543
No 165
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=23.02 E-value=41 Score=19.12 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=10.1
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 26 s~~~Gd~i~v~~ 37 (72)
T 1spk_A 26 SFAQGDVLTLLI 37 (72)
T ss_dssp CBCTTCEEEECC
T ss_pred cCCCCCEEEEeE
Confidence 599999999953
No 166
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=23.02 E-value=41 Score=19.06 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=10.7
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (65)
T 2nwm_A 19 TLQKGDIVYIHKE 31 (65)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCcCCCEEEEEEe
Confidence 6999999999643
No 167
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=22.86 E-value=41 Score=19.34 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=10.9
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 20 s~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 20 TIKEGDIVTLINK 32 (69)
T ss_dssp CBCTTCEEEEEES
T ss_pred ccCCCCEEEEEEc
Confidence 6999999999753
No 168
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=22.79 E-value=33 Score=21.51 Aligned_cols=10 Identities=30% Similarity=0.331 Sum_probs=9.5
Q ss_pred cCCCCEEEEE
Q psy3777 22 FVTGDTIIVN 31 (99)
Q Consensus 22 f~~GD~v~V~ 31 (99)
+++||+|.|.
T Consensus 84 l~~GdvI~V~ 93 (106)
T 3d0f_A 84 IRPGALIRVK 93 (106)
T ss_dssp CCTTEEEEEE
T ss_pred CCCCCEEEEE
Confidence 8999999997
No 169
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=22.75 E-value=1.1e+02 Score=20.51 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=26.5
Q ss_pred CCCCcCCCCEEEEEEEEe--cCCceeeceEEEEEEEEe
Q psy3777 18 NIPDFVTGDTIIVNLNVI--EGTRKRIQAYEGIVISRR 53 (99)
Q Consensus 18 ~~p~f~~GD~v~V~~~i~--eg~k~r~q~f~GvvIa~r 53 (99)
.+-..++||-+-.-..-. -|.+...+.|.|++--.+
T Consensus 31 ~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~ 68 (145)
T 2hd9_A 31 TLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTS 68 (145)
T ss_dssp HHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECS
T ss_pred HHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcC
Confidence 345899999998765432 355667899999887765
No 170
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=22.72 E-value=42 Score=18.97 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 21 sf~~Gd~i~v~~~ 33 (65)
T 1b07_A 21 PFKKGDILRIRDK 33 (65)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCcCCCEEEEEEe
Confidence 5999999999653
No 171
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.69 E-value=1.1e+02 Score=20.49 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=24.2
Q ss_pred cCCCCEEEEEEEEe--cCCceeeceEEEEEEEEe
Q psy3777 22 FVTGDTIIVNLNVI--EGTRKRIQAYEGIVISRR 53 (99)
Q Consensus 22 f~~GD~v~V~~~i~--eg~k~r~q~f~GvvIa~r 53 (99)
-.+||+|.|.++-. ++.=+|-|.+.++|+.-+
T Consensus 33 a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtk 66 (121)
T 3bbo_M 33 ARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTC 66 (121)
T ss_dssp CCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECS
T ss_pred cccCcEEEEEEEEccCCCccccCcEEEEEEEEec
Confidence 67999999998753 222246789999999865
No 172
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=22.69 E-value=51 Score=18.51 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=12.1
Q ss_pred CcCCCCEEEEEEEEe
Q psy3777 21 DFVTGDTIIVNLNVI 35 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (99)
.|+.||+|.|.-...
T Consensus 25 s~~~Gd~i~v~~~~~ 39 (70)
T 2ecz_A 25 SFRKGERITLLRQVD 39 (70)
T ss_dssp CCCTTCBCEEEEEEE
T ss_pred CCCCCCEEEEEEecC
Confidence 699999999976543
No 173
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.60 E-value=39 Score=22.66 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.3
Q ss_pred CCCC-CcCCCCEEEEEE
Q psy3777 17 KNIP-DFVTGDTIIVNL 32 (99)
Q Consensus 17 ~~~p-~f~~GD~v~V~~ 32 (99)
.++. +|++||+|+..-
T Consensus 84 ~~fniDik~GDiIE~ye 100 (120)
T 2crv_A 84 DEEKVEFKPGDQVICYE 100 (120)
T ss_dssp SCTTSCCCTTEEEEEEC
T ss_pred ccCCCCCCCCCEEEEEE
Confidence 4678 999999999854
No 174
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=22.56 E-value=60 Score=18.15 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=11.9
Q ss_pred CCcCCCCEEEEEEEE
Q psy3777 20 PDFVTGDTIIVNLNV 34 (99)
Q Consensus 20 p~f~~GD~v~V~~~i 34 (99)
-.|+.||+|.|.-..
T Consensus 30 Ls~~~Gd~i~v~~~~ 44 (72)
T 4glm_A 30 LDFEVGDKIRILATL 44 (72)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred CCCCCCCEEEEEEcc
Confidence 369999999997543
No 175
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=22.50 E-value=39 Score=21.06 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|++||+|...|.
T Consensus 18 ~f~vGD~L~F~y~ 30 (91)
T 1f56_A 18 SFRAGDVLVFKYI 30 (91)
T ss_dssp CBCTTCEEEEECC
T ss_pred cEeCCCEEEEEcc
Confidence 6999999999885
No 176
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=22.30 E-value=49 Score=18.83 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=10.9
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 27 s~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 27 TIKEGDIVTLINK 39 (73)
T ss_dssp CBCTTCEEEEEEC
T ss_pred eECCCCEEEEEEC
Confidence 6999999999753
No 177
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=22.23 E-value=44 Score=18.75 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 20 s~~~Gd~i~v~~~ 32 (67)
T 1gl5_A 20 RLERGQEYIILEK 32 (67)
T ss_dssp CBCTTCEEEEEEC
T ss_pred cCCcCCEEEEEEc
Confidence 5999999999764
No 178
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=22.23 E-value=47 Score=18.54 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 7 s~~~Gd~i~v~~~~ 20 (63)
T 1tuc_A 7 TMKKGDILTLLNST 20 (63)
T ss_dssp CBCTTCEEEEEECC
T ss_pred CCCCCCEEEEEEec
Confidence 69999999997643
No 179
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=22.23 E-value=62 Score=18.07 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 24 s~~~Gd~i~v~~~~ 37 (69)
T 4esr_A 24 TIHRGDIIRVFFKD 37 (69)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 69999999997543
No 180
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=22.21 E-value=67 Score=22.48 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=14.2
Q ss_pred CcCCCCEEEEEEEEecCCcee
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKR 41 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r 41 (99)
-|++||.|.|.+.-....+.|
T Consensus 61 ~~~vGd~V~VkVl~vD~~~~r 81 (182)
T 1kl9_A 61 LIRIGRNECVVVIRVDKEKGY 81 (182)
T ss_dssp --CTTCEEEEEEEEEETTTTE
T ss_pred hcCCCCEEEEEEEEEECCCCE
Confidence 499999999998765444444
No 181
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=21.96 E-value=50 Score=18.54 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (69)
T 1wyx_A 21 SFRKGDIMTVLEQ 33 (69)
T ss_dssp CBCTTCEEEEEET
T ss_pred CCcCCCEEEEeEC
Confidence 6999999999654
No 182
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.91 E-value=57 Score=19.44 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 36 sf~~Gd~i~v~~~~ 49 (88)
T 2dbk_A 36 ALEVGDIVKVTRMN 49 (88)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEec
Confidence 59999999997654
No 183
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=21.85 E-value=35 Score=19.54 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=10.6
Q ss_pred CCcCCCCEEEEEE
Q psy3777 20 PDFVTGDTIIVNL 32 (99)
Q Consensus 20 p~f~~GD~v~V~~ 32 (99)
-.|+.||+|.|.-
T Consensus 21 Ls~~~Gd~i~v~~ 33 (60)
T 2lx7_A 21 LRFAAGELITLLQ 33 (60)
T ss_dssp CCCCTTCEEEBSC
T ss_pred ccCCCCCEEEEeE
Confidence 3699999999853
No 184
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=21.81 E-value=71 Score=22.12 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=15.4
Q ss_pred CcCCCCEEEEEEEEecCCcee
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKR 41 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r 41 (99)
.|++||.|.|.+.-....+.|
T Consensus 61 ~~~vGd~V~vkVl~vd~~~~~ 81 (175)
T 2a19_A 61 LIRVGKNDVAVVLRVDKEKGY 81 (175)
T ss_dssp CCCTTSEEEEEEEEEETTTTE
T ss_pred cCCCCCEEEEEEEEEECCCCe
Confidence 499999999998765444443
No 185
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=21.74 E-value=1.1e+02 Score=16.61 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (65)
T 2oaw_A 19 TMKKGDILTLLNS 31 (65)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 5999999999764
No 186
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=21.67 E-value=51 Score=24.22 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=9.5
Q ss_pred CCcCCCCEEEE
Q psy3777 20 PDFVTGDTIIV 30 (99)
Q Consensus 20 p~f~~GD~v~V 30 (99)
.+|++||.|++
T Consensus 128 ~pf~vGD~I~i 138 (286)
T 2vv5_A 128 RPFRAGEYVDL 138 (286)
T ss_dssp CSSCTTCEEES
T ss_pred CCccCCCEEEE
Confidence 46999999987
No 187
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.58 E-value=1e+02 Score=20.54 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=31.1
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEE--EeecCeeEEEEEeecCCccc
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVR--KISYNEGIERTFQLYSPIIS 84 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR--~i~~gvGVEr~fpl~SP~I~ 84 (99)
.++.||+|.|- . |. .+ --+|.|+++-...- .+.|- |+....|.|.-.|+|.-.|.
T Consensus 45 ~IkkGD~V~Vi---~-Gk-dK--Gk~GkV~~V~~k~~--~V~VEgvn~~k~~G~~~e~pIh~SNV~ 101 (121)
T 3j21_U 45 PVRVGDKVRIM---R-GD-YK--GHEGKVVEVDLKRY--RIYVEGATLRKTNGTEVFYPIHPSNVM 101 (121)
T ss_dssp ECCSSSEEEEC---S-SS-CS--SEEEEEEEEETTTT--EEEETTCEEECSSSCEEECCBCGGGEE
T ss_pred ccccCCEEEEe---e-cC-CC--CcEeEEEEEEecCC--EEEEeCeEEEecCCcEEEcccCHHHeE
Confidence 58999999874 2 42 11 12599999875321 22221 11122345666788876553
No 188
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.50 E-value=47 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 25 s~~~Gd~i~v~~~ 37 (68)
T 1x2p_A 25 SFLRGEKILILRQ 37 (68)
T ss_dssp CCCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 5999999999754
No 189
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=21.50 E-value=47 Score=18.10 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=11.4
Q ss_pred CCcCCCCEEEEEEE
Q psy3777 20 PDFVTGDTIIVNLN 33 (99)
Q Consensus 20 p~f~~GD~v~V~~~ 33 (99)
-.|+.||+|.|.-.
T Consensus 22 Ls~~~Gd~i~v~~~ 35 (63)
T 3eg3_A 22 LSITKGEKLRVLGY 35 (63)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 36999999999654
No 190
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.50 E-value=51 Score=18.77 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=11.1
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 26 sf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 26 SFPEGAIIRILNK 38 (73)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEC
Confidence 6999999999754
No 191
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=21.48 E-value=46 Score=18.72 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=10.5
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 24 s~~~Gd~i~v~~ 35 (71)
T 2jt4_A 24 TIKSGDKVYILD 35 (71)
T ss_dssp CBCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 599999999975
No 192
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=21.44 E-value=45 Score=20.00 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=10.1
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 37 sf~~GDiI~V~~ 48 (83)
T 2ke9_A 37 NVRAGDVITVLE 48 (83)
T ss_dssp CBCTTCEEEESC
T ss_pred cccCCCEEEEEE
Confidence 599999999853
No 193
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.29 E-value=52 Score=18.99 Aligned_cols=13 Identities=46% Similarity=0.524 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 32 sf~~Gd~i~v~~~ 44 (76)
T 2csi_A 32 TFCTGDIITVFGE 44 (76)
T ss_dssp CCCTTCEEEEESS
T ss_pred cCCCCCEEEEeEe
Confidence 5999999999643
No 194
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=21.13 E-value=47 Score=19.16 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=10.1
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 28 sf~~Gd~i~v~~ 39 (76)
T 2ed1_A 28 TFIEGEVIIVTG 39 (76)
T ss_dssp CCCSSCEEEESS
T ss_pred CcCCCCEEEEEE
Confidence 599999999953
No 195
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=21.12 E-value=1.2e+02 Score=18.58 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=28.1
Q ss_pred cCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEE
Q psy3777 22 FVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVR 64 (99)
Q Consensus 22 f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR 64 (99)
+.+||.|+|.= ..+=--.+.|.|-++...|+.--..||
T Consensus 2 i~rGs~VrIlr-----~eSywy~~vG~V~~Vd~~~~~ypV~Vr 39 (70)
T 1qp2_A 2 VQRGSKVRILR-----PESYWFQDVGTVASVDQSGIKYPVIVR 39 (70)
T ss_dssp CCTTCEEEECC-----TTSTTTTCEEEEEEECCSSCSCSEEEE
T ss_pred cCCCCEEEEcC-----ccceeecceeEEEEEeCCCcEeeEEEE
Confidence 57899988842 112234689999999998888888886
No 196
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=21.11 E-value=58 Score=18.38 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=10.7
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.| -..
T Consensus 28 s~~~Gd~i~v-~~~ 40 (72)
T 2kgt_A 28 SFRAGDVFHV-ARK 40 (72)
T ss_dssp BCCTTCCEEE-EEE
T ss_pred CCCCCCEEEE-eeC
Confidence 5999999999 543
No 197
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.10 E-value=75 Score=18.27 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=12.1
Q ss_pred CcCCCCEEEEEEEEe
Q psy3777 21 DFVTGDTIIVNLNVI 35 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~ 35 (99)
.|+.||+|.|.-...
T Consensus 28 s~~~Gd~i~v~~~~~ 42 (76)
T 2epd_A 28 SFRRGDVLRLHERAS 42 (76)
T ss_dssp EECTTCEEEEEEEEE
T ss_pred CCCCCCEEEEEEeCC
Confidence 599999999976643
No 198
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=21.04 E-value=43 Score=21.00 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|++||+|...+.
T Consensus 23 ~f~vGD~L~F~y~ 35 (96)
T 2cbp_A 23 RFRAGDILLFNYN 35 (96)
T ss_dssp CBCTTCEEEEECC
T ss_pred eEcCCCEEEEEec
Confidence 6999999999884
No 199
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=21.03 E-value=53 Score=18.36 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=10.2
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 25 s~~~Gd~i~v~~ 36 (68)
T 2djq_A 25 KFNKGDVILLRR 36 (68)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 699999999854
No 200
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=21.02 E-value=1.4e+02 Score=22.65 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=21.1
Q ss_pred CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCC
Q psy3777 21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGL 57 (99)
Q Consensus 21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~ 57 (99)
.-.|||+++|++..-+- +.| |+.-...+.|.
T Consensus 72 GAePGD~L~V~I~~i~~-----~~~-G~~~~~pg~G~ 102 (297)
T 2f4l_A 72 GVKPGDTLKVRIKRIEL-----PRR-GMIVTGKGFGV 102 (297)
T ss_dssp TCCTTCEEEEEEEEEEC-----CSE-EEEEEETTCST
T ss_pred CCCCCCEEEEEEEEeee-----cCc-EEEEecCCCCC
Confidence 35799999999886643 344 76555566665
No 201
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=20.93 E-value=48 Score=19.08 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 22 sf~~Gd~i~vl~~ 34 (67)
T 2b86_A 22 DIKKNERLWLLDD 34 (67)
T ss_dssp CBCTTCEEEEEEC
T ss_pred ccCCCCEEEEEec
Confidence 5999999999753
No 202
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=20.87 E-value=54 Score=18.49 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=9.5
Q ss_pred CcCCCCEEEEE
Q psy3777 21 DFVTGDTIIVN 31 (99)
Q Consensus 21 ~f~~GD~v~V~ 31 (99)
.|+.||+|.|.
T Consensus 25 sf~~Gd~i~v~ 35 (70)
T 2vkn_A 25 SFEQNEILQVS 35 (70)
T ss_dssp CBCTTCEEEEE
T ss_pred cCCCCCEEEEE
Confidence 59999999884
No 203
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.86 E-value=67 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 35 sf~~Gd~i~v~~~~ 48 (78)
T 2ed0_A 35 SFQEGAIIYVIKKN 48 (78)
T ss_dssp CBCSSCEEEEEEEC
T ss_pred cccCCCEEEEEEeC
Confidence 69999999997653
No 204
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.85 E-value=55 Score=18.36 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=10.9
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 25 s~~~Gd~i~v~~~ 37 (68)
T 1x2k_A 25 YFEEGDIIYITDM 37 (68)
T ss_dssp CCCSSCEEEEEEC
T ss_pred cCCCCCEEEEEEc
Confidence 5999999999754
No 205
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=20.85 E-value=51 Score=18.41 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 25 s~~~Gd~i~v~~~ 37 (68)
T 2dl3_A 25 PLQKGDIVYIYKQ 37 (68)
T ss_dssp CBCTTCEEEEEEC
T ss_pred cCCCCCEEEEeEe
Confidence 5999999999653
No 206
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.82 E-value=68 Score=18.58 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 35 s~~~Gd~i~v~~~~ 48 (79)
T 1x69_A 35 SFDPDDIITNIEMI 48 (79)
T ss_dssp CCCTTCEEEEEEEC
T ss_pred CcCCCCEEEEeEec
Confidence 59999999997543
No 207
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.74 E-value=55 Score=18.43 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 25 s~~~Gd~i~v~~~ 37 (68)
T 2dl4_A 25 EMRPGDIITLLED 37 (68)
T ss_dssp CCCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 5999999999754
No 208
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.50 E-value=50 Score=18.63 Aligned_cols=12 Identities=33% Similarity=0.288 Sum_probs=10.1
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 26 s~~~Gd~i~v~~ 37 (71)
T 2dnu_A 26 GFEKGVTVEVIR 37 (71)
T ss_dssp CBCTTCEEEECC
T ss_pred cCCCCCEEEEeE
Confidence 599999999953
No 209
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.47 E-value=55 Score=18.32 Aligned_cols=13 Identities=23% Similarity=0.343 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy3777 21 DFVTGDTIIVNLN 33 (99)
Q Consensus 21 ~f~~GD~v~V~~~ 33 (99)
.|+.||+|.|.-.
T Consensus 25 s~~~Gd~i~v~~~ 37 (70)
T 2ct3_A 25 ELREGDRVDVMQQ 37 (70)
T ss_dssp CBCTTEEEEEEEE
T ss_pred cCCCCCEEEEEEE
Confidence 5999999999654
No 210
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.43 E-value=63 Score=20.06 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=12.1
Q ss_pred cCCCCEEEEEEEEe
Q psy3777 22 FVTGDTIIVNLNVI 35 (99)
Q Consensus 22 f~~GD~v~V~~~i~ 35 (99)
|++||.|+|.+.-.
T Consensus 61 ~~~Gd~V~VkV~~v 74 (103)
T 2eqs_A 61 VSKGQRVKVKVLSF 74 (103)
T ss_dssp CCTTCEEEEEEEEE
T ss_pred eCCCCEEEEEEEEE
Confidence 89999999998654
No 211
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=20.37 E-value=53 Score=22.67 Aligned_cols=15 Identities=7% Similarity=-0.206 Sum_probs=12.6
Q ss_pred CCcCCCCEEEEEEEE
Q psy3777 20 PDFVTGDTIIVNLNV 34 (99)
Q Consensus 20 p~f~~GD~v~V~~~i 34 (99)
..|++||.|++.+.-
T Consensus 110 ~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 110 EAVGYLDILKARVIG 124 (179)
T ss_dssp GTCCTTCEEEEEEEE
T ss_pred hcCCCCCEEEEEEEC
Confidence 459999999999863
No 212
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.34 E-value=54 Score=18.45 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 25 s~~~Gd~i~v~~~~ 38 (68)
T 2dmo_A 25 QVMPGNIVFVLKKG 38 (68)
T ss_dssp CCCTTCEEEECEEC
T ss_pred CCCCCCEEEEEEeC
Confidence 59999999997543
No 213
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=20.19 E-value=56 Score=19.15 Aligned_cols=11 Identities=45% Similarity=0.712 Sum_probs=9.9
Q ss_pred CcCCCCEEEEE
Q psy3777 21 DFVTGDTIIVN 31 (99)
Q Consensus 21 ~f~~GD~v~V~ 31 (99)
.|+.||+|.|.
T Consensus 23 s~~~Gd~I~V~ 33 (83)
T 3i5r_A 23 DLHLGDILTVN 33 (83)
T ss_dssp CBCTTCEEEEE
T ss_pred ccCCCCEEEEe
Confidence 69999999986
No 214
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=20.12 E-value=38 Score=19.24 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=10.1
Q ss_pred CcCCCCEEEEEE
Q psy3777 21 DFVTGDTIIVNL 32 (99)
Q Consensus 21 ~f~~GD~v~V~~ 32 (99)
.|+.||+|.|.-
T Consensus 19 s~~~Gd~i~v~~ 30 (65)
T 2fei_A 19 ELKVGDIIDINE 30 (65)
T ss_dssp CCCTTCEEECCC
T ss_pred CCCCCCEEEEEE
Confidence 699999998853
No 215
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.10 E-value=50 Score=19.07 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=11.3
Q ss_pred CcCCCCEEEEEEEE
Q psy3777 21 DFVTGDTIIVNLNV 34 (99)
Q Consensus 21 ~f~~GD~v~V~~~i 34 (99)
.|+.||+|.|.-..
T Consensus 27 s~~~Gd~i~vl~~~ 40 (75)
T 2egc_A 27 GFQEGVSMEVLERN 40 (75)
T ss_dssp CBCTTCEEEECEEC
T ss_pred CCCCCCEEEEEEcC
Confidence 49999999997543
Done!