RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3777
         (99 letters)



>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia
          coli [TaxId: 562]}
          Length = 114

 Score = 91.4 bits (227), Expect = 3e-26
 Identities = 49/92 (53%), Positives = 73/92 (79%), Gaps = 3/92 (3%)

Query: 2  NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
          N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct: 2  NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 58

Query: 62 IVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
           VRKIS  EG+ER FQ +SP++ SI VKRRG 
Sbjct: 59 TVRKISNGEGVERVFQTHSPVVDSISVKRRGA 90


>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 108

 Score = 89.8 bits (223), Expect = 1e-25
 Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 4/93 (4%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
            L++ IEQ+      + +PDF  GDT+ V+  V EG R R QA+EG+VI+    G   +
Sbjct: 9  GELLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKS 64

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          F VRKIS+ EG+ER F   SP+++ + +  RG 
Sbjct: 65 FTVRKISFGEGVERVFPFASPLVNQVTIVERGK 97


>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
          thermophilus [TaxId: 274]}
          Length = 138

 Score = 83.5 bits (206), Expect = 8e-23
 Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 1/99 (1%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MN    I+  E   ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ 
Sbjct: 1  MNRGALIKLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTT 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD-RNAYI 98
          F VRK+SY  G+ER F L+SP+I  I + +RG  R A +
Sbjct: 61 FTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKL 99


>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator
          TM1602, N-terminal domain {Thermotoga maritima [TaxId:
          2336]}
          Length = 65

 Score = 25.1 bits (55), Expect = 0.68
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGT-RKRIQAYE--GIVISRRNKG 56
          M  +++   + I+R+ +   + V+G  +   L+V      + I      G  I    +G
Sbjct: 1  MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRG 59


>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460
          {Methanococcus jannaschii [TaxId: 2190]}
          Length = 152

 Score = 24.9 bits (54), Expect = 1.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 2  NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYE 46
          ++++ I  EEII+  K IP    G   +V  + ++        YE
Sbjct: 6  DILEAIRNEEIIKESKKIPMPYFGLFALVIFDKVKELGSETSLYE 50


>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581
          {Streptococcus pyogenes [TaxId: 1314]}
          Length = 112

 Score = 24.3 bits (52), Expect = 2.6
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 1  MNLIQKIEQEEIIRLKKNIP 20
          M+ I  IE  +++ L + + 
Sbjct: 1  MSYINNIEHAKVLDLTQEVM 20


>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 114

 Score = 23.2 bits (50), Expect = 4.7
 Identities = 5/38 (13%), Positives = 13/38 (34%)

Query: 27 TIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVR 64
          + +V L   +      +   G+    ++    S F+  
Sbjct: 15 SAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRI 52


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 23.5 bits (51), Expect = 6.0
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 8   EQEEIIRLKKNIPDFVTGDTIIVNLN 33
           E+E +IR   N  D     TIIV LN
Sbjct: 121 EEEVVIR-SVNFTD--NAKTIIVQLN 143


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.381 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 371,333
Number of extensions: 16388
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 16
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)